Citrus Sinensis ID: 023425
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 282 | 2.2.26 [Sep-21-2011] | |||||||
| Q5UP97 | 533 | Putative sel1-like repeat | N/A | no | 0.375 | 0.198 | 0.318 | 4e-05 | |
| Q9UBV2 | 794 | Protein sel-1 homolog 1 O | yes | no | 0.336 | 0.119 | 0.343 | 0.0002 | |
| Q9Z2G6 | 790 | Protein sel-1 homolog 1 O | no | no | 0.336 | 0.120 | 0.343 | 0.0002 | |
| Q80Z70 | 794 | Protein sel-1 homolog 1 O | yes | no | 0.336 | 0.119 | 0.343 | 0.0002 | |
| Q9ESM7 | 794 | Protein sel-1 homolog 1 O | N/A | no | 0.336 | 0.119 | 0.333 | 0.0003 |
| >sp|Q5UP97|YL021_MIMIV Putative sel1-like repeat-containing protein L21 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L21 PE=4 SV=1 | Back alignment and function desciption |
|---|
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 88 ARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSD-QQAF 146
+ + L++ +LK +P +A+ LL AAN G +QY LG + E YV +D QA+
Sbjct: 175 SNFMLAETYLKLSIPNFNEAIKNYLL--AANQGCNISQYRLG-MIYFEGKYVNTDMNQAY 231
Query: 147 YYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGA 196
+ + + Q + + Y LG VY + D K + A+ CF +++ GH A
Sbjct: 232 KWFKLSAKQGNYFSQYGLGRVYYSMDSTKYNCQKAINCFIKSANCGHIYA 281
|
Acanthamoeba polyphaga (taxid: 5757) |
| >sp|Q9UBV2|SE1L1_HUMAN Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 116 AANMGDPDAQYELGCRLRVENDYV-QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCV 174
AAN G+ A LG +D V QS++ A +Y +KA D +P LG YL G V
Sbjct: 404 AANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGV 463
Query: 175 KKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQV 210
+ + AL F +A+E+G + GS+ G+ V
Sbjct: 464 QVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 499
|
May play a role in Notch signaling (By similarity). May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Homo sapiens (taxid: 9606) |
| >sp|Q9Z2G6|SE1L1_MOUSE Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l PE=2 SV=2 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 116 AANMGDPDAQYELGCRLRVENDYV-QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCV 174
AAN G+ A LG +D V QS++ A +Y +KA D +P LG YL G V
Sbjct: 400 AANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGV 459
Query: 175 KKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQV 210
+ + AL F +A+E+G + GS+ G+ V
Sbjct: 460 QVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 495
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May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Mus musculus (taxid: 10090) |
| >sp|Q80Z70|SE1L1_RAT Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Sel1l PE=2 SV=2 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 116 AANMGDPDAQYELGCRLRVENDYV-QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCV 174
AAN G+ A LG +D V QS++ A +Y +KA D +P LG YL G V
Sbjct: 404 AANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGV 463
Query: 175 KKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQV 210
+ + AL F +A+E+G + GS+ G+ V
Sbjct: 464 QVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 499
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May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Rattus norvegicus (taxid: 10116) |
| >sp|Q9ESM7|SE1L1_MESAU Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 116 AANMGDPDAQYELGCRLRVENDYV-QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCV 174
AAN G+ A LG +D V QS++ A +Y +KA D +P LG YL G +
Sbjct: 404 AANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGI 463
Query: 175 KKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQV 210
+ + AL F +A+E+G + GS+ G+ V
Sbjct: 464 QVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 499
|
May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Mesocricetus auratus (taxid: 10036) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 282 | ||||||
| 255575074 | 253 | conserved hypothetical protein [Ricinus | 0.886 | 0.988 | 0.844 | 1e-122 | |
| 297825607 | 287 | binding protein [Arabidopsis lyrata subs | 0.890 | 0.874 | 0.816 | 1e-119 | |
| 116831119 | 289 | unknown [Arabidopsis thaliana] | 0.890 | 0.868 | 0.816 | 1e-119 | |
| 18400868 | 288 | binding protein [Arabidopsis thaliana] g | 0.890 | 0.871 | 0.816 | 1e-119 | |
| 449443093 | 276 | PREDICTED: uncharacterized protein LOC10 | 0.971 | 0.992 | 0.753 | 1e-119 | |
| 224054484 | 261 | predicted protein [Populus trichocarpa] | 0.904 | 0.977 | 0.804 | 1e-118 | |
| 21554301 | 288 | unknown [Arabidopsis thaliana] | 0.890 | 0.871 | 0.808 | 1e-117 | |
| 212275053 | 284 | uncharacterized protein LOC100191579 [Ze | 0.872 | 0.866 | 0.75 | 1e-112 | |
| 195642910 | 284 | hypothetical protein [Zea mays] | 0.872 | 0.866 | 0.745 | 1e-110 | |
| 242064434 | 284 | hypothetical protein SORBIDRAFT_04g00703 | 0.890 | 0.883 | 0.727 | 1e-110 |
| >gi|255575074|ref|XP_002528442.1| conserved hypothetical protein [Ricinus communis] gi|223532118|gb|EEF33925.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/251 (84%), Positives = 231/251 (92%), Gaps = 1/251 (0%)
Query: 25 QKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNS 84
+KR +HSRNKKAME IAKGWSALKEVDRVIDYCELND RLIPLL+TAKENFELALEADNS
Sbjct: 2 EKREMHSRNKKAMEFIAKGWSALKEVDRVIDYCELNDSRLIPLLRTAKENFELALEADNS 61
Query: 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQ 144
NTHAR+WLSKLHLKYHVPGACKA+GAALLV+AA+MGDP+AQYELGCRLRVENDYVQSDQQ
Sbjct: 62 NTHARFWLSKLHLKYHVPGACKAIGAALLVEAADMGDPEAQYELGCRLRVENDYVQSDQQ 121
Query: 145 AFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLL 204
AFYY+EKAVDQLHPGALYLLG VYLTGDCVK+D ASALWCFHRASEKGHAGAA+AYGSLL
Sbjct: 122 AFYYLEKAVDQLHPGALYLLGAVYLTGDCVKQDFASALWCFHRASEKGHAGAAVAYGSLL 181
Query: 205 LRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLRWLQR 264
LRG QVPE L K KR S+AKKA+ + E MNPVE AKEQF++AA+AGC+LGL+WLQR
Sbjct: 182 LRGAQVPESLMKFKLKRSSSAKKAK-DAEIAEMNPVELAKEQFQIAAKAGCDLGLKWLQR 240
Query: 265 IEEEEKRLLTE 275
IEEEE RLL E
Sbjct: 241 IEEEETRLLNE 251
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297825607|ref|XP_002880686.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297326525|gb|EFH56945.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/251 (81%), Positives = 232/251 (92%)
Query: 25 QKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNS 84
Q+R LHSRNKKAME +AKGWSA+KEVDRVIDYCELNDRRLIPLL+ AKENFELALEADN
Sbjct: 29 QRRGLHSRNKKAMEYVAKGWSAIKEVDRVIDYCELNDRRLIPLLRGAKENFELALEADNL 88
Query: 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQ 144
NTHARYWLSKLHLKYHVPGACKA+GAALLV+AA+MG+ DAQYELGCRLRVE D+VQSDQQ
Sbjct: 89 NTHARYWLSKLHLKYHVPGACKAVGAALLVEAADMGNADAQYELGCRLRVEYDHVQSDQQ 148
Query: 145 AFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLL 204
AF+YIE AVDQLHPGALYLLG VYLTGDCVK+D+ SA+WCFHRASEKGHAGAAIAYGSLL
Sbjct: 149 AFHYIENAVDQLHPGALYLLGIVYLTGDCVKQDVDSAIWCFHRASEKGHAGAAIAYGSLL 208
Query: 205 LRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLRWLQR 264
LRGVQVPE LTKLNA VS K+++ NLE+ MNP+E AKEQF++AA+AGC+LGL+WLQR
Sbjct: 209 LRGVQVPESLTKLNAVGVSPPKRSKKNLENPGMNPLEMAKEQFQIAARAGCDLGLQWLQR 268
Query: 265 IEEEEKRLLTE 275
+E+EEK L++E
Sbjct: 269 VEQEEKLLMSE 279
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116831119|gb|ABK28514.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/251 (81%), Positives = 231/251 (92%)
Query: 25 QKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNS 84
Q+R LHSRN+KAME +AKGWSA+KEV+RVIDYCELNDRRLIPLL+ AKENFELALEADN
Sbjct: 30 QRRGLHSRNEKAMEYVAKGWSAIKEVERVIDYCELNDRRLIPLLRGAKENFELALEADNL 89
Query: 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQ 144
NTHARYWLSKLHLKYHVPGACKA+GAALLV+AA+MG+ DAQYELGCRLRVEND+VQSDQQ
Sbjct: 90 NTHARYWLSKLHLKYHVPGACKAVGAALLVEAADMGNADAQYELGCRLRVENDHVQSDQQ 149
Query: 145 AFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLL 204
AF+YIE AVDQLHPGALYLLG VYLTGDCVK+D+ SA+WCFHRASEKGHAGAAIAYGSLL
Sbjct: 150 AFHYIENAVDQLHPGALYLLGIVYLTGDCVKQDVDSAIWCFHRASEKGHAGAAIAYGSLL 209
Query: 205 LRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLRWLQR 264
LRGVQVPE LTKLN VS K+AR NLE+ MNP+E AKEQF++AA+AGC+LGL+WLQR
Sbjct: 210 LRGVQVPESLTKLNVVGVSPPKRARKNLENPEMNPLEMAKEQFQIAARAGCDLGLKWLQR 269
Query: 265 IEEEEKRLLTE 275
+E+EEK L+ E
Sbjct: 270 VEQEEKLLMRE 280
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18400868|ref|NP_565600.1| binding protein [Arabidopsis thaliana] gi|186502978|ref|NP_001118384.1| binding protein [Arabidopsis thaliana] gi|4874298|gb|AAD31360.1| expressed protein [Arabidopsis thaliana] gi|20197749|gb|AAM15230.1| expressed protein [Arabidopsis thaliana] gi|51971683|dbj|BAD44506.1| unknown protein [Arabidopsis thaliana] gi|91806270|gb|ABE65863.1| unknown [Arabidopsis thaliana] gi|94442439|gb|ABF19007.1| At2g25570 [Arabidopsis thaliana] gi|330252623|gb|AEC07717.1| binding protein [Arabidopsis thaliana] gi|330252625|gb|AEC07719.1| binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/251 (81%), Positives = 231/251 (92%)
Query: 25 QKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNS 84
Q+R LHSRN+KAME +AKGWSA+KEV+RVIDYCELNDRRLIPLL+ AKENFELALEADN
Sbjct: 30 QRRGLHSRNEKAMEYVAKGWSAIKEVERVIDYCELNDRRLIPLLRGAKENFELALEADNL 89
Query: 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQ 144
NTHARYWLSKLHLKYHVPGACKA+GAALLV+AA+MG+ DAQYELGCRLRVEND+VQSDQQ
Sbjct: 90 NTHARYWLSKLHLKYHVPGACKAVGAALLVEAADMGNADAQYELGCRLRVENDHVQSDQQ 149
Query: 145 AFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLL 204
AF+YIE AVDQLHPGALYLLG VYLTGDCVK+D+ SA+WCFHRASEKGHAGAAIAYGSLL
Sbjct: 150 AFHYIENAVDQLHPGALYLLGIVYLTGDCVKQDVDSAIWCFHRASEKGHAGAAIAYGSLL 209
Query: 205 LRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLRWLQR 264
LRGVQVPE LTKLN VS K+AR NLE+ MNP+E AKEQF++AA+AGC+LGL+WLQR
Sbjct: 210 LRGVQVPESLTKLNVVGVSPPKRARKNLENPEMNPLEMAKEQFQIAARAGCDLGLKWLQR 269
Query: 265 IEEEEKRLLTE 275
+E+EEK L+ E
Sbjct: 270 VEQEEKLLMRE 280
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443093|ref|XP_004139315.1| PREDICTED: uncharacterized protein LOC101222228 [Cucumis sativus] gi|449493614|ref|XP_004159376.1| PREDICTED: uncharacterized LOC101222228 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/276 (75%), Positives = 239/276 (86%), Gaps = 2/276 (0%)
Query: 1 MQRQISKASTLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELN 60
++R +K + +A LL+ +QH R LHSRN+KAME IAKGW+ALKEVDRVIDYCELN
Sbjct: 2 LRRTFTKRFSNPTALNFLLRFSQH--RELHSRNRKAMEFIAKGWNALKEVDRVIDYCELN 59
Query: 61 DRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG 120
DRRLIP L+TAKENFELALE DNSNTHARYWLS+LHLKYHVPGACKA+GAALLV+AA MG
Sbjct: 60 DRRLIPHLRTAKENFELALEVDNSNTHARYWLSRLHLKYHVPGACKAVGAALLVEAAEMG 119
Query: 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIAS 180
D DAQYELGCRLRVEN YVQSDQQAFY++EKAVDQLHPGAL+LLG VYLTGDCVKKDIAS
Sbjct: 120 DADAQYELGCRLRVENKYVQSDQQAFYFLEKAVDQLHPGALFLLGAVYLTGDCVKKDIAS 179
Query: 181 ALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPV 240
ALWCFHRASEKGHAGAAIAYGSLLL+GV+VPE LTK + K S +KAR N ++++M+ +
Sbjct: 180 ALWCFHRASEKGHAGAAIAYGSLLLKGVEVPESLTKFSLKNGSPTRKARKNPDASMMSSI 239
Query: 241 EKAKEQFEVAAQAGCNLGLRWLQRIEEEEKRLLTES 276
E A+EQF AA +GC+LGL+WL R+EEEEK L TES
Sbjct: 240 EMAREQFNAAAISGCDLGLKWLNRLEEEEKSLSTES 275
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054484|ref|XP_002298283.1| predicted protein [Populus trichocarpa] gi|222845541|gb|EEE83088.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/256 (80%), Positives = 228/256 (89%), Gaps = 1/256 (0%)
Query: 26 KRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN 85
+R +H RNKKAME IAKGWSALKEVDRVIDYCE ND+RLIPLL+TAKENF+LALE DNSN
Sbjct: 3 QREIHGRNKKAMEFIAKGWSALKEVDRVIDYCERNDKRLIPLLRTAKENFQLALEVDNSN 62
Query: 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145
THARYWLSKLHLKYHVPG A+G ALLV+AANMGDP+AQYELGCRLRVENDYVQSDQQA
Sbjct: 63 THARYWLSKLHLKYHVPGQNHAIGVALLVEAANMGDPEAQYELGCRLRVENDYVQSDQQA 122
Query: 146 FYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLL 205
FYYIEKAV++LHPGALYLLG VYLTGDCVKKDIASALWCFHRASEKGH GAAIAYGSLLL
Sbjct: 123 FYYIEKAVEKLHPGALYLLGAVYLTGDCVKKDIASALWCFHRASEKGHVGAAIAYGSLLL 182
Query: 206 RGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLRWLQRI 265
RG QVPE LTK + KR S+AKK + E+ MNPVE+AKEQF++AA+AG +LGL+WLQR+
Sbjct: 183 RGAQVPEHLTKFSLKRGSSAKKMNS-AENTEMNPVERAKEQFQIAAKAGSDLGLKWLQRL 241
Query: 266 EEEEKRLLTESSRIET 281
EEEE RLL ES E+
Sbjct: 242 EEEENRLLAESHSKES 257
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21554301|gb|AAM63376.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/251 (80%), Positives = 228/251 (90%)
Query: 25 QKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNS 84
Q+R LHSRNKKAME +AKGWSA+KEVDRVI YCELNDRRLIPLL+ AKENFELALEADN
Sbjct: 30 QRRGLHSRNKKAMEYVAKGWSAIKEVDRVIYYCELNDRRLIPLLRGAKENFELALEADNL 89
Query: 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQ 144
NTHARYWLSK HLKY VPGACKA+GAALLV+AA+MG+ DAQYELGCRLRVEND+VQSDQQ
Sbjct: 90 NTHARYWLSKFHLKYLVPGACKAVGAALLVEAADMGNADAQYELGCRLRVENDHVQSDQQ 149
Query: 145 AFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLL 204
AF+YIE AVDQLHPGALYLLG VYLTGDCVK+D+ SA+WCFHRASEKGHAGAAIAYGSLL
Sbjct: 150 AFHYIENAVDQLHPGALYLLGIVYLTGDCVKQDVDSAIWCFHRASEKGHAGAAIAYGSLL 209
Query: 205 LRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLRWLQR 264
LRGVQVPE LTKLN VS K+AR NLE+ MNP+E A+EQF++AA+AGC+LGL+WLQR
Sbjct: 210 LRGVQVPESLTKLNVVGVSPPKRARKNLENPEMNPLEMAEEQFQIAARAGCDLGLKWLQR 269
Query: 265 IEEEEKRLLTE 275
+E+EEK L+ E
Sbjct: 270 VEQEEKLLMRE 280
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|212275053|ref|NP_001130481.1| uncharacterized protein LOC100191579 [Zea mays] gi|194689250|gb|ACF78709.1| unknown [Zea mays] gi|194701718|gb|ACF84943.1| unknown [Zea mays] gi|223948935|gb|ACN28551.1| unknown [Zea mays] gi|238015262|gb|ACR38666.1| unknown [Zea mays] gi|413926183|gb|AFW66115.1| hypothetical protein ZEAMMB73_304309 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 186/248 (75%), Positives = 220/248 (88%), Gaps = 2/248 (0%)
Query: 24 HQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADN 83
+Q+RW+H RNKKAMEL+AKGWSAL+EVDRVIDY +LND+RLIPLL+ AKENFELALE DN
Sbjct: 30 NQQRWMHDRNKKAMELVAKGWSALQEVDRVIDYADLNDKRLIPLLRGAKENFELALEIDN 89
Query: 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQ 143
NTHARYWL K+H KYHVPGACKA+GAALLV+AANMGDPDAQYELGCRLR+ENDYVQSDQ
Sbjct: 90 GNTHARYWLGKMHFKYHVPGACKAVGAALLVEAANMGDPDAQYELGCRLRIENDYVQSDQ 149
Query: 144 QAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSL 203
QAF+YIE+AVDQLHPGALYLLG VYLTGDCVK+D+ASALWCFHRASEKGHAGAAIAYGSL
Sbjct: 150 QAFHYIEQAVDQLHPGALYLLGAVYLTGDCVKRDMASALWCFHRASEKGHAGAAIAYGSL 209
Query: 204 LLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLRWLQ 263
LL+G ++PE +T+ N+ + + K R + +PV+ AKEQF++AA+AGC+LGLRWL+
Sbjct: 210 LLKGAEIPEVITRFNSGKSPSTGKMRKRTQQQ--DPVKLAKEQFQIAAEAGCDLGLRWLK 267
Query: 264 RIEEEEKR 271
R+E E +
Sbjct: 268 RLEAYENQ 275
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|195642910|gb|ACG40923.1| hypothetical protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/248 (74%), Positives = 218/248 (87%), Gaps = 2/248 (0%)
Query: 24 HQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADN 83
+Q+RW+H RNKKAMEL+AKGWSAL+EVDRVIDY + ND+RLIPLL+ AKENFELALE DN
Sbjct: 30 NQQRWMHDRNKKAMELVAKGWSALQEVDRVIDYADRNDKRLIPLLRGAKENFELALEIDN 89
Query: 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQ 143
NTHARYWL K+H KYHVPGACKA+GAALLV+AANMGDPDAQYELGCRLR+ENDYVQSDQ
Sbjct: 90 GNTHARYWLGKMHFKYHVPGACKAVGAALLVEAANMGDPDAQYELGCRLRIENDYVQSDQ 149
Query: 144 QAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSL 203
QAF+YIE+AVDQLHPGALYLLG VYLTGDCVK+D+ASALWCFHRASEKGHAGAAIAYGSL
Sbjct: 150 QAFHYIEQAVDQLHPGALYLLGAVYLTGDCVKRDMASALWCFHRASEKGHAGAAIAYGSL 209
Query: 204 LLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLRWLQ 263
LL+G ++PE +T+ N+ + + K R +PV+ AKEQF++AA+AGC+LGLRWL+
Sbjct: 210 LLKGAEIPEVITRFNSGKSPSTGKMRKRTLQQ--DPVKLAKEQFQIAAEAGCDLGLRWLK 267
Query: 264 RIEEEEKR 271
R+E E +
Sbjct: 268 RLEAYENQ 275
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242064434|ref|XP_002453506.1| hypothetical protein SORBIDRAFT_04g007030 [Sorghum bicolor] gi|241933337|gb|EES06482.1| hypothetical protein SORBIDRAFT_04g007030 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 184/253 (72%), Positives = 222/253 (87%), Gaps = 2/253 (0%)
Query: 19 LQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELA 78
L + ++ +RW+H RNKKAMEL+AKGWSAL+EVDRVIDY + ND+RLIPLL+ AKENFELA
Sbjct: 25 LAAARNPQRWMHDRNKKAMELVAKGWSALQEVDRVIDYADRNDKRLIPLLRGAKENFELA 84
Query: 79 LEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDY 138
LE DN NTHARYWL K+H KYHVPGACKA+GAALLV+AANMGDPDAQYELGCRLR+ENDY
Sbjct: 85 LEIDNDNTHARYWLGKMHFKYHVPGACKAVGAALLVEAANMGDPDAQYELGCRLRIENDY 144
Query: 139 VQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAI 198
VQSDQQAF+YIE+AVDQLHPGALYLLG VYLTGDCVK+DIASALWCFHRASEKGHAGAA+
Sbjct: 145 VQSDQQAFHYIEQAVDQLHPGALYLLGAVYLTGDCVKRDIASALWCFHRASEKGHAGAAV 204
Query: 199 AYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLG 258
AYGSLLL+G ++PE +T+ N+ + + K R + +P++ AKEQF++AA+AGC+LG
Sbjct: 205 AYGSLLLKGAEIPEVITRFNSGKSPSTGKMRK--RTLQQDPIKLAKEQFQIAAEAGCDLG 262
Query: 259 LRWLQRIEEEEKR 271
LRWL+R+E+ E +
Sbjct: 263 LRWLKRLEDYENQ 275
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 282 | ||||||
| TAIR|locus:2040130 | 288 | AT2G25570 [Arabidopsis thalian | 0.890 | 0.871 | 0.796 | 1e-107 | |
| UNIPROTKB|Q74B15 | 252 | GSU2447 "TPR-related repeat pr | 0.386 | 0.432 | 0.348 | 5.9e-06 | |
| TIGR_CMR|GSU_2447 | 252 | GSU_2447 "conserved hypothetic | 0.386 | 0.432 | 0.348 | 5.9e-06 | |
| UNIPROTKB|Q748V7 | 245 | GSU2894 "SEL1 repeat-containin | 0.343 | 0.395 | 0.309 | 2.8e-05 | |
| TIGR_CMR|GSU_2894 | 245 | GSU_2894 "conserved hypothetic | 0.343 | 0.395 | 0.309 | 2.8e-05 | |
| MGI|MGI:1329016 | 790 | Sel1l "sel-1 suppressor of lin | 0.670 | 0.239 | 0.287 | 0.00037 | |
| UNIPROTKB|G3V9D3 | 793 | Sel1l "Sel1 (Suppressor of lin | 0.670 | 0.238 | 0.287 | 0.00037 | |
| UNIPROTKB|F1PVX5 | 794 | SEL1L "Uncharacterized protein | 0.670 | 0.238 | 0.287 | 0.00037 | |
| UNIPROTKB|Q9UBV2 | 794 | SEL1L "Protein sel-1 homolog 1 | 0.670 | 0.238 | 0.287 | 0.00037 | |
| RGD|620147 | 794 | Sel1l "sel-1 suppressor of lin | 0.670 | 0.238 | 0.287 | 0.00037 |
| TAIR|locus:2040130 AT2G25570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
Identities = 200/251 (79%), Positives = 225/251 (89%)
Query: 25 QKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNS 84
Q+R LHSRN+KAME +AKGWSA+KEV+RVIDYCELNDRRLIPLL+ AKENFELALEADN
Sbjct: 30 QRRGLHSRNEKAMEYVAKGWSAIKEVERVIDYCELNDRRLIPLLRGAKENFELALEADNL 89
Query: 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQ 144
NTHARYWLSKLHLKYHVPGACKA+GAALLV+AA+MG+ DAQYELGCRLRVEND+VQSDQQ
Sbjct: 90 NTHARYWLSKLHLKYHVPGACKAVGAALLVEAADMGNADAQYELGCRLRVENDHVQSDQQ 149
Query: 145 AFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLL 204
AF+YIE AVDQLHPGALYLLG VYLTGDCVK+D+ SA+WCFHRASEKGHAGAAIAYGSLL
Sbjct: 150 AFHYIENAVDQLHPGALYLLGIVYLTGDCVKQDVDSAIWCFHRASEKGHAGAAIAYGSLL 209
Query: 205 LRGVQVPECLTKLNXXXXXXXXXXXXNLESNLMNPVEKAKEQFEVAAQAGCNLGLRWLQR 264
LRGVQVPE LTKLN NLE+ MNP+E AKEQF++AA+AGC+LGL+WLQR
Sbjct: 210 LRGVQVPESLTKLNVVGVSPPKRARKNLENPEMNPLEMAKEQFQIAARAGCDLGLKWLQR 269
Query: 265 IEEEEKRLLTE 275
+E+EEK L+ E
Sbjct: 270 VEQEEKLLMRE 280
|
|
| UNIPROTKB|Q74B15 GSU2447 "TPR-related repeat protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 38/109 (34%), Positives = 52/109 (47%)
Query: 103 GACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALY 162
GA A G A AA GD A + L + + +A Y++ A ++ H A Y
Sbjct: 28 GAKAANGYAATQAAARRGDAKAAFRLALMHLDGSGAPRKPTEAARYMKMAAERGHVRAQY 87
Query: 163 LLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVP 211
LGT Y G VK+D ++A +A+ G A A AYG +LL G VP
Sbjct: 88 YLGTFYHEGTGVKRDTSAAARWIGKAAAGGDAEAQYAYGMVLLSGDGVP 136
|
|
| TIGR_CMR|GSU_2447 GSU_2447 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 38/109 (34%), Positives = 52/109 (47%)
Query: 103 GACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALY 162
GA A G A AA GD A + L + + +A Y++ A ++ H A Y
Sbjct: 28 GAKAANGYAATQAAARRGDAKAAFRLALMHLDGSGAPRKPTEAARYMKMAAERGHVRAQY 87
Query: 163 LLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVP 211
LGT Y G VK+D ++A +A+ G A A AYG +LL G VP
Sbjct: 88 YLGTFYHEGTGVKRDTSAAARWIGKAAAGGDAEAQYAYGMVLLSGDGVP 136
|
|
| UNIPROTKB|Q748V7 GSU2894 "SEL1 repeat-containing protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 121 (47.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 107 AMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGT 166
A+G L AA MG+ AQYE+ + + +A + +A +Q H A Y +
Sbjct: 147 ALGVKWLQQAAKMGNIRAQYEIATMYETGRELKKDISEAAKWYLRAAEQGHSRAQYTIAL 206
Query: 167 VYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSL 203
++L G+ V++D A A+ +A+E GH A + SL
Sbjct: 207 LFLKGEGVRQDRAEAVKWLRKAAEGGHTKAQMDLASL 243
|
|
| TIGR_CMR|GSU_2894 GSU_2894 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 121 (47.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 107 AMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGT 166
A+G L AA MG+ AQYE+ + + +A + +A +Q H A Y +
Sbjct: 147 ALGVKWLQQAAKMGNIRAQYEIATMYETGRELKKDISEAAKWYLRAAEQGHSRAQYTIAL 206
Query: 167 VYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSL 203
++L G+ V++D A A+ +A+E GH A + SL
Sbjct: 207 LFLKGEGVRQDRAEAVKWLRKAAEGGHTKAQMDLASL 243
|
|
| MGI|MGI:1329016 Sel1l "sel-1 suppressor of lin-12-like (C. elegans)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 0.00037, P = 0.00037
Identities = 59/205 (28%), Positives = 90/205 (43%)
Query: 14 AALGLLQSNQHQKRWLHSR---NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKT 70
A +G+LQS + H R N A ++ G S ++ + R+ D E N +L+
Sbjct: 299 AGIGVLQSCE--SALTHYRLVANHVASDISLTGGSVVQRI-RLPDEVE-NPGMNSGMLEE 354
Query: 71 AKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVD----AANMGDPDAQY 126
+ L A+ + A+ L +LHL H G D AAN G+ A
Sbjct: 355 DLIQYYQFL-AEKGDVQAQVGLGQLHL--H-GGRGVEQNHQRAFDYFNLAANAGNSHAMA 410
Query: 127 ELGCRLRVENDYV-QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCF 185
LG +D V QS++ A +Y +KA D +P LG YL G V+ + AL F
Sbjct: 411 FLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYF 470
Query: 186 HRASEKGHAGAAIAYGSLLLRGVQV 210
+A+E+G + GS+ G+ V
Sbjct: 471 QKAAEQGWVDGQLQLGSMYYNGIGV 495
|
|
| UNIPROTKB|G3V9D3 Sel1l "Sel1 (Suppressor of lin-12) 1 homolog (C. elegans), isoform CRA_a" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 0.00037, P = 0.00037
Identities = 59/205 (28%), Positives = 90/205 (43%)
Query: 14 AALGLLQSNQHQKRWLHSR---NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKT 70
A +G+LQS + H R N A ++ G S ++ + R+ D E N +L+
Sbjct: 302 AGIGVLQSCE--SALTHYRLVANHVASDISLTGGSVVQRI-RLPDEVE-NPGMNSGMLEE 357
Query: 71 AKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVD----AANMGDPDAQY 126
+ L A+ + A+ L +LHL H G D AAN G+ A
Sbjct: 358 DLIQYYQFL-AEKGDVQAQVGLGQLHL--H-GGRGVEQNHQRAFDYFNLAANAGNSHAMA 413
Query: 127 ELGCRLRVENDYV-QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCF 185
LG +D V QS++ A +Y +KA D +P LG YL G V+ + AL F
Sbjct: 414 FLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYF 473
Query: 186 HRASEKGHAGAAIAYGSLLLRGVQV 210
+A+E+G + GS+ G+ V
Sbjct: 474 QKAAEQGWVDGQLQLGSMYYNGIGV 498
|
|
| UNIPROTKB|F1PVX5 SEL1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 0.00037, P = 0.00037
Identities = 59/205 (28%), Positives = 90/205 (43%)
Query: 14 AALGLLQSNQHQKRWLHSR---NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKT 70
A +G+LQS + H R N A ++ G S ++ + R+ D E N +L+
Sbjct: 303 AGIGVLQSCE--SALTHYRLVANHVASDISLTGGSVVQRI-RLPDEVE-NPGMNSGMLEE 358
Query: 71 AKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVD----AANMGDPDAQY 126
+ L A+ + A+ L +LHL H G D AAN G+ A
Sbjct: 359 DLIQYYQFL-AEKGDVQAQVGLGQLHL--H-GGRGVEQNHQRAFDYFNLAANAGNSHAMA 414
Query: 127 ELGCRLRVENDYV-QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCF 185
LG +D V QS++ A +Y +KA D +P LG YL G V+ + AL F
Sbjct: 415 FLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYF 474
Query: 186 HRASEKGHAGAAIAYGSLLLRGVQV 210
+A+E+G + GS+ G+ V
Sbjct: 475 QKAAEQGWVDGQLQLGSMYYNGIGV 499
|
|
| UNIPROTKB|Q9UBV2 SEL1L "Protein sel-1 homolog 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 0.00037, P = 0.00037
Identities = 59/205 (28%), Positives = 90/205 (43%)
Query: 14 AALGLLQSNQHQKRWLHSR---NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKT 70
A +G+LQS + H R N A ++ G S ++ + R+ D E N +L+
Sbjct: 303 AGIGVLQSCE--SALTHYRLVANHVASDISLTGGSVVQRI-RLPDEVE-NPGMNSGMLEE 358
Query: 71 AKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVD----AANMGDPDAQY 126
+ L A+ + A+ L +LHL H G D AAN G+ A
Sbjct: 359 DLIQYYQFL-AEKGDVQAQVGLGQLHL--H-GGRGVEQNHQRAFDYFNLAANAGNSHAMA 414
Query: 127 ELGCRLRVENDYV-QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCF 185
LG +D V QS++ A +Y +KA D +P LG YL G V+ + AL F
Sbjct: 415 FLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYF 474
Query: 186 HRASEKGHAGAAIAYGSLLLRGVQV 210
+A+E+G + GS+ G+ V
Sbjct: 475 QKAAEQGWVDGQLQLGSMYYNGIGV 499
|
|
| RGD|620147 Sel1l "sel-1 suppressor of lin-12-like (C. elegans)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 0.00037, P = 0.00037
Identities = 59/205 (28%), Positives = 90/205 (43%)
Query: 14 AALGLLQSNQHQKRWLHSR---NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKT 70
A +G+LQS + H R N A ++ G S ++ + R+ D E N +L+
Sbjct: 303 AGIGVLQSCE--SALTHYRLVANHVASDISLTGGSVVQRI-RLPDEVE-NPGMNSGMLEE 358
Query: 71 AKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVD----AANMGDPDAQY 126
+ L A+ + A+ L +LHL H G D AAN G+ A
Sbjct: 359 DLIQYYQFL-AEKGDVQAQVGLGQLHL--H-GGRGVEQNHQRAFDYFNLAANAGNSHAMA 414
Query: 127 ELGCRLRVENDYV-QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCF 185
LG +D V QS++ A +Y +KA D +P LG YL G V+ + AL F
Sbjct: 415 FLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYF 474
Query: 186 HRASEKGHAGAAIAYGSLLLRGVQV 210
+A+E+G + GS+ G+ V
Sbjct: 475 QKAAEQGWVDGQLQLGSMYYNGIGV 499
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 282 | |||
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 1e-07 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 9e-07 | |
| smart00671 | 36 | smart00671, SEL1, Sel1-like repeats | 1e-04 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 0.003 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 1e-07
Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 3/129 (2%)
Query: 72 KENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCR 131
K E + L+ Y A AA +GD A LG
Sbjct: 26 KLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAK---ALKSYEKAAELGDAAALALLGQM 82
Query: 132 LRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191
+ +A + A AL+ LG +Y G V D+ AL + +A++
Sbjct: 83 YGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL 142
Query: 192 GHAGAAIAY 200
G+ AA+A
Sbjct: 143 GNVEAALAM 151
|
Length = 292 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 9e-07
Identities = 41/194 (21%), Positives = 68/194 (35%), Gaps = 18/194 (9%)
Query: 69 KTAKENFELALE-----ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPD 123
K + A + A + A + L ++ AA +G+ +
Sbjct: 87 KGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE 146
Query: 124 AQYELGCRLRVENDYV---------QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCV 174
A R+ Y+ D++A Y KA + +P A LLG +Y G V
Sbjct: 147 AAL---AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGV 203
Query: 175 KKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLES 234
+D+ A + +A+E+G A G + L G V + AK K+A L+
Sbjct: 204 PRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEED-KKQALEWLQK 262
Query: 235 NLMNPVEKAKEQFE 248
+ A E
Sbjct: 263 ACELGFDNACEALR 276
|
Length = 292 |
| >gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193
A Y LG +Y G V KD+ AL + +A+E G+
Sbjct: 1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.1 bits (88), Expect = 0.003
Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 3/120 (2%)
Query: 91 WLSKLHLKYHVPGACK---AMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFY 147
+ L K A + + LL + + + + Y +A
Sbjct: 3 FALLLSGKSLFAAAEENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAKALK 62
Query: 148 YIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRG 207
EKA + AL LLG +Y G V +D A + A+ G A A G + G
Sbjct: 63 SYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANG 122
|
Length = 292 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 282 | |||
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 99.94 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 99.93 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 99.91 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.7 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 99.69 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.58 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.56 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.53 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.53 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.52 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.52 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.52 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.5 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.49 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.44 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.44 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.4 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.39 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.36 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.35 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.34 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.34 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.33 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.32 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.32 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.32 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.23 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.21 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.19 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.18 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.18 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.16 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.15 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.1 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.09 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.08 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.08 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.08 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.07 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.04 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.0 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.99 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.97 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.94 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.93 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.93 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.91 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.88 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.87 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.84 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.84 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.83 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.82 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.8 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.8 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.74 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.7 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.7 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.68 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.66 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.64 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.58 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.56 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.53 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.52 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.5 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.5 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.47 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.46 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.45 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.45 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.44 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.4 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.39 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.37 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.37 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.36 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.36 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.36 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.35 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.35 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.34 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.34 | |
| smart00671 | 36 | SEL1 Sel1-like repeats. These represent a subfamil | 98.3 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.24 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.24 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.23 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.22 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.22 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.22 | |
| PF08238 | 39 | Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r | 98.21 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.2 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.2 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.19 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.13 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.13 | |
| smart00671 | 36 | SEL1 Sel1-like repeats. These represent a subfamil | 98.13 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.13 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.13 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.13 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.1 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.1 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.09 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.07 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.04 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.04 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.03 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.01 | |
| PF08238 | 39 | Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r | 98.01 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.0 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.99 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.98 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.97 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.96 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.94 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.94 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.93 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.92 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.92 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.91 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.89 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.88 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.87 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 97.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.85 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.78 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.75 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 97.75 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.74 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.72 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.68 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.63 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 97.62 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.57 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.55 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.47 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 97.44 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.43 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.41 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.4 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.34 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.31 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.26 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.21 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.2 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.15 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.14 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.14 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.09 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.08 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.05 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.04 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.03 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.02 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.0 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.99 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.96 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.93 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.87 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 96.86 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.81 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.79 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.76 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.72 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.71 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 96.71 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.69 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 96.64 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.55 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.34 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.32 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.32 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.05 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.02 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.98 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 95.96 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 95.96 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 95.94 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.92 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 95.73 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 95.45 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.38 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 95.37 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.36 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.33 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 95.19 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.18 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 95.12 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.12 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 95.05 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 94.92 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 94.7 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 94.37 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.28 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.25 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.15 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.12 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 93.95 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 93.91 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.82 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.63 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.46 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 93.38 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 93.31 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.26 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 93.19 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.17 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 93.0 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 92.88 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.83 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.32 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 92.19 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.14 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 92.09 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.64 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 91.57 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 91.53 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 90.88 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.51 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.51 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 89.24 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.76 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 87.0 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 86.09 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 85.93 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 85.13 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.01 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.82 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 84.74 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.56 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 84.56 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 84.06 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 83.86 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 83.23 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.72 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 82.03 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 81.89 | |
| cd02679 | 79 | MIT_spastin MIT: domain contained within Microtubu | 80.9 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.07 |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-25 Score=192.54 Aligned_cols=215 Identities=24% Similarity=0.207 Sum_probs=188.6
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 023425 55 DYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRV 134 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~ 134 (282)
.+..........++..+..+|+++.. .+++.+++.++.+|..+.+++++..+|+.||+++++.|++.++++||.+|..
T Consensus 44 ~~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~ 121 (292)
T COG0790 44 ALLNGAGSAYPPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYAN 121 (292)
T ss_pred cccccccccccccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhc
Confidence 34444556677889999999999964 5788999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhcC---CCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQLHPGA---LYLLGTVYLTG---DCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGV 208 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~g~~~A---~~~Lg~~y~~g---~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~ 208 (282)
|.++++|..+|..||.+|++.|++++ ++.||.+|..| .++..+.++|+.||.+|++.+++.++++||.+|..|.
T Consensus 122 G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 122 GRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGL 201 (292)
T ss_pred CCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCC
Confidence 98899999999999999999999999 99999999999 7888888899999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHH----Hchhch------hccC----------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 023425 209 QVPECLTKLNAKRVSAAKK----ARANLE------SNLM----------NPVEKAKEQFEVAAQAGCNLGLRWLQRIEEE 268 (282)
Q Consensus 209 g~~~~~~~A~~~~~~a~~~----a~~~lg------~~~~----------~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~~ 268 (282)
|+++|..+|+.||.+|++. +++.++ .+++ .+...|..|+.+++..|.+.++..+..+...
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKIG 281 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 9999999999999999983 445554 2233 3999999999999999999999999966655
Q ss_pred Hhh
Q 023425 269 EKR 271 (282)
Q Consensus 269 ~~~ 271 (282)
...
T Consensus 282 ~~~ 284 (292)
T COG0790 282 LSA 284 (292)
T ss_pred hhC
Confidence 543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-24 Score=185.39 Aligned_cols=201 Identities=19% Similarity=0.166 Sum_probs=180.8
Q ss_pred hhcccchHHHHHHHHHHhhhh-hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcC
Q 023425 27 RWLHSRNKKAMELIAKGWSAL-KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGAC 105 (282)
Q Consensus 27 ~~~~~~~~~A~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~ 105 (282)
......+..+.+++.++.... ..........+..+.++..|..+|++||+++ ++.|++.+++.||.+|..|.++++|
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccC
Confidence 345677899999998876522 2344556777778999999999999999988 5679999999999999999889999
Q ss_pred HHHHHHHHHHHHhCCCHHH---HHHHHHHHhcC---CCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHH
Q 023425 106 KAMGAALLVDAANMGDPDA---QYELGCRLRVE---NDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIA 179 (282)
Q Consensus 106 ~~~A~~~~~~Aa~~g~~~A---~~~Lg~~y~~g---~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~ 179 (282)
..+|..||.+|++.|++++ ++.||.+|..| .++..+...|+.||.+|++.+++.+++.||.+|..|.|+++|++
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHH
Confidence 9999999999999999999 99999999999 66777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcc----------cHHHHHHHHHHHHHHHc
Q 023425 180 SALWCFHRASEKGHAGAAIAYGSLLLRGVQVPE----------CLTKLNAKRVSAAKKAR 229 (282)
Q Consensus 180 ~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~----------~~~~A~~~~~~a~~~a~ 229 (282)
+|+.||++|+++|+..++++++.+|..|.+++. +...|..|+.+++..+.
T Consensus 209 ~A~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 209 KAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999988776 99999999999987443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=188.91 Aligned_cols=245 Identities=24% Similarity=0.227 Sum_probs=201.8
Q ss_pred hhhhhcccchHHHHHHHHHHhhhhh-HHHHHHHHHhhcC-CCchhhHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHH
Q 023425 24 HQKRWLHSRNKKAMELIAKGWSALK-EVDRVIDYCELND-RRLIPLLKTAKENFELALE-----ADNSNTHARYWLSKLH 96 (282)
Q Consensus 24 ~~~~~~~~~~~~A~e~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~-----~~~g~~~a~~~Lg~~~ 96 (282)
+..+.-.+....|..|+..+..... ........+...+ .++..|+++|+.||+.+++ +..+++.|++.||.+|
T Consensus 219 ~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 219 GNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLY 298 (552)
T ss_pred CcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHH
Confidence 3333333356789999988766333 2333445566666 8999999999999999965 2357899999999999
Q ss_pred hcCCCCCc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCc
Q 023425 97 LKYHVPGA-CKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVK 175 (282)
Q Consensus 97 ~~~~~~~~-~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~ 175 (282)
..+.++.. |...|+.+|.+|++.|+++|++.||.+|..|. ..+|..+|.+||..|+..|++.|+++|+.||..|.|++
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVE 377 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcC
Confidence 99987777 99999999999999999999999999999988 55889999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-----------------------------
Q 023425 176 KDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----------------------------- 226 (282)
Q Consensus 176 ~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----------------------------- 226 (282)
.|.++|+.||++|++.|++.|++.++.++..|. +..+...+..|+.++..
T Consensus 378 r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred CCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchh
Confidence 999999999999999999999999999999987 55565555555555532
Q ss_pred ---------------HHchhch------hccCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Q 023425 227 ---------------KARANLE------SNLMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEEEEKR 271 (282)
Q Consensus 227 ---------------~a~~~lg------~~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~~~~~ 271 (282)
.+...|| .++..|+..|..+|.+|++++ ..++++|+.+.|..-.
T Consensus 457 ~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g 521 (552)
T KOG1550|consen 457 RAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEG 521 (552)
T ss_pred HHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcC
Confidence 0111233 346778999999999999999 9999999999986533
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=188.11 Aligned_cols=198 Identities=23% Similarity=0.176 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC-CCCCcCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHhcCCCCc
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKY-HVPGACKAMGAALLVDAAN-------MGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~-~~~~~~~~~A~~~~~~Aa~-------~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
...|+++|+.++ +.|+..+++.+|.+|..| .++.+|.+.|+.||+.|++ .|++.|++.||.+|..|..++
T Consensus 228 ~~~a~~~~~~~a--~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAA--KLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHH--hhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 688999999995 669999999999999999 8999999999999999998 899999999999999999888
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHH
Q 023425 140 Q-SDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLN 218 (282)
Q Consensus 140 ~-d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~ 218 (282)
+ |...|+.+|.+|++.|+++|++.||.+|..|. ..+|..+|++||..|+..|++.|+++++.||..|.|++.+.++|+
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 8 99999999999999999999999999999998 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----chhch----hccCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 023425 219 AKRVSAAKKA----RANLE----SNLMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEEEE 269 (282)
Q Consensus 219 ~~~~~a~~~a----~~~lg----~~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~~~ 269 (282)
.||+++++.+ .+.++ .++ +.+..+.-++...++.|++.++...+.+....
T Consensus 385 ~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~ 442 (552)
T KOG1550|consen 385 AYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQS 442 (552)
T ss_pred HHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhc
Confidence 9999999954 55555 234 77888888999999999999998888887765
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-22 Score=181.03 Aligned_cols=233 Identities=18% Similarity=0.059 Sum_probs=173.9
Q ss_pred hhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc
Q 023425 19 LQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLK 98 (282)
Q Consensus 19 ~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~ 98 (282)
+++|.+--....|+.-.|+..|.+++. +.+.....+++.|+.+.....++.|+..|.+|+...|+++.++-+||.+|.+
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvk-ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye 298 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVK-LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE 298 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhc-CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEec
Confidence 334444444444444455555544444 2222234444444444444555555555555555555555555555555543
Q ss_pred CCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCC
Q 023425 99 YHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCV 174 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~ 174 (282)
. .+.+.|+..|++|++ +.+++|+.|||..+.+.+.+ .+|..+|.+|... .+++++++||.+|.+
T Consensus 299 q----G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V----~ea~~cYnkaL~l~p~hadam~NLgni~~E---- 366 (966)
T KOG4626|consen 299 Q----GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSV----TEAVDCYNKALRLCPNHADAMNNLGNIYRE---- 366 (966)
T ss_pred c----ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccch----HHHHHHHHHHHHhCCccHHHHHHHHHHHHH----
Confidence 3 345899999999974 67999999999999987777 9999999999987 799999999999999
Q ss_pred ccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc--cCCCHHHHH
Q 023425 175 KKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN--LMNPVEKAK 244 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~--~~~~~~~A~ 244 (282)
.+.++.|..+|++|.+- +.+.|+.|||.+|.+ ++++++|+..|+.|+. +++.|+|.. +.++...|+
T Consensus 367 ~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq----qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ----QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh----cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 89999999999999774 678899999999998 8999999999999987 688999954 788999999
Q ss_pred HHHHHHHHhc--cHHHHHHHHHHHHH
Q 023425 245 EQFEVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 245 ~~~~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
..|.+|+... ..+|..+|+.+.+.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKD 468 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhc
Confidence 9999999988 56678889988874
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-21 Score=172.38 Aligned_cols=251 Identities=16% Similarity=0.052 Sum_probs=200.5
Q ss_pred hhhhhhhhHHhhhhhhh------cchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 023425 4 QISKASTLKSAALGLLQ------SNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFEL 77 (282)
Q Consensus 4 ~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 77 (282)
.++.|-+.++.++.+-. +..+.--.-.|+..+|-+.|.+++.....+ .+.--+.|..+...+++-.|+.+|++
T Consensus 165 ~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f-AiawsnLg~~f~~~Gei~~aiq~y~e 243 (966)
T KOG4626|consen 165 DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF-AIAWSNLGCVFNAQGEIWLAIQHYEE 243 (966)
T ss_pred CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce-eeeehhcchHHhhcchHHHHHHHHHH
Confidence 34445555555554332 222222222678889999999988755422 22222333344456789999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 78 ALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 78 a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
|+.++|..++|+++||.+|... ..++.|+..|.+|+. +.++.++.|||.+|.+.+.. +.|+..|++|++.
T Consensus 244 AvkldP~f~dAYiNLGnV~ke~----~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~l----dlAI~~Ykral~~ 315 (966)
T KOG4626|consen 244 AVKLDPNFLDAYINLGNVYKEA----RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLL----DLAIDTYKRALEL 315 (966)
T ss_pred hhcCCCcchHHHhhHHHHHHHH----hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccH----HHHHHHHHHHHhc
Confidence 9999999999999999999976 455999999999984 57999999999999996666 9999999999998
Q ss_pred --CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-----
Q 023425 156 --LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----- 226 (282)
Q Consensus 156 --g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----- 226 (282)
+.++|+.+||..+.+ .++..+|..+|.+|+.. .++++++|||.+|.+ ...++.|...|++|.+
T Consensus 316 ~P~F~~Ay~NlanALkd----~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~ 387 (966)
T KOG4626|consen 316 QPNFPDAYNNLANALKD----KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEF 387 (966)
T ss_pred CCCchHHHhHHHHHHHh----ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhh
Confidence 799999999999999 89999999999999886 689999999999998 8889999999999987
Q ss_pred -HHchhchhc--cCCCHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHhh
Q 023425 227 -KARANLESN--LMNPVEKAKEQFEVAAQAGC--NLGLRWLQRIEEEEKR 271 (282)
Q Consensus 227 -~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g~--~~a~~~l~~l~~~~~~ 271 (282)
.++.||+.+ .++++++|+.+|+.|++... ..|..+++...++..+
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 689999966 67799999999999999874 4556666666665543
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=137.32 Aligned_cols=163 Identities=20% Similarity=0.161 Sum_probs=147.6
Q ss_pred CchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC-CCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCC---C
Q 023425 63 RLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKY-HVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVEND---Y 138 (282)
Q Consensus 63 ~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~-~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~---~ 138 (282)
++.+||++|.+.|++-++ +.++|.++|.+|..+..| ++...+...|++.|+.|++.+.+.|+.++|.+...|.. .
T Consensus 46 gi~knF~~A~kv~K~nCd-en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 46 GIQKNFQAAVKVFKKNCD-ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHHHhccc-ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccC
Confidence 446789999999999996 679999999999998877 56778999999999999999999999999999988753 3
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC----------C----------CccCHHHHHHHHHHHHHcCCHHHHH
Q 023425 139 VQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGD----------C----------VKKDIASALWCFHRASEKGHAGAAI 198 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~----------g----------~~~d~~~A~~~~~~A~~~g~~~a~~ 198 (282)
..|..+|..|+.+|++.++..|++.|+.+|..|. | +.+|.++|+++-.+|++.+++.|+-
T Consensus 125 dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCA 204 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACA 204 (248)
T ss_pred CCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHh
Confidence 4568999999999999999999999999999882 2 3489999999999999999999999
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 199 AYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 199 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
|++.||..|.||++|.++|..|-.+|.+
T Consensus 205 N~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 205 NVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred hHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 9999999999999999999998888865
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.5e-15 Score=141.54 Aligned_cols=222 Identities=17% Similarity=0.089 Sum_probs=175.7
Q ss_pred cchHHHHHHHHHHhhhh--hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 31 SRNKKAMELIAKGWSAL--KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
+++++|++.|.+++... ........+..+..+...+++++|+.+|+++++.+|+++.+++.+|.++... .++++
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~----g~~~e 383 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLEL----GDPDK 383 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC----CCHHH
Confidence 57889999998887632 2333344455555555668899999999999999999999999999999865 57799
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+..|+++++ +.++++++.+|.++.. ..++++|+.+|+++.+. .++.++..||.++.. .+++++|+..
T Consensus 384 A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~ 455 (615)
T TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHFI----KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMAT 455 (615)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 9999999975 5689999999999988 44559999999999987 678899999999998 8999999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH------chhc------h-hc--cCCCHHHHHHHH
Q 023425 185 FHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA------RANL------E-SN--LMNPVEKAKEQF 247 (282)
Q Consensus 185 ~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a------~~~l------g-~~--~~~~~~~A~~~~ 247 (282)
|++++.. .++.+++.+|.++.. .+++++|+..|++|.... +.++ + .. ..+++++|+.+|
T Consensus 456 ~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 456 FRRCKKNFPEAPDVYNYYGELLLD----QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999875 568899999999998 788999999999998721 1111 1 11 257888999999
Q ss_pred HHHHHhc--cHHHHHHHHHHHHH
Q 023425 248 EVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 248 ~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
++|++.. +..+...++.+...
T Consensus 532 ~kAl~l~p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 532 EKALIIDPECDIAVATMAQLLLQ 554 (615)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHH
Confidence 9988776 34455556665554
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=119.30 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=110.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhcCC-CCcCCHHHHHHHHHHHHHcCCHH
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN-MGDPDAQYELGCRLRVEN-DYVQSDQQAFYYIEKAVDQLHPG 159 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~~g~-~~~~d~~~A~~~~~kAa~~g~~~ 159 (282)
....|++++.||..+. ++.+++++|.+.|++-++ .+++.++|.+|+.++.|. +...+++.|+++|+.|++.+.+.
T Consensus 30 ~EK~Pe~C~lLgdYlE---gi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~ 106 (248)
T KOG4014|consen 30 EEKRPESCQLLGDYLE---GIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQ 106 (248)
T ss_pred ccCCchHHHHHHHHHH---HHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHH
Confidence 4468999999999876 356899999999999995 589999999999998886 45678999999999999999999
Q ss_pred HHHHHHHHHhcCC---CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Q 023425 160 ALYLLGTVYLTGD---CVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRG 207 (282)
Q Consensus 160 A~~~Lg~~y~~g~---g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g 207 (282)
|+..+|.+..+|. ...-|.++|+.|+.+|++.++.+|+++|+-+|+.|
T Consensus 107 aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g 157 (248)
T KOG4014|consen 107 ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGG 157 (248)
T ss_pred HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhcc
Confidence 9999999999985 34555999999999999999999999999999987
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-14 Score=138.59 Aligned_cols=211 Identities=17% Similarity=0.103 Sum_probs=169.0
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++.+.+++...+.. ...++..+......+++++|+..|+++++.+|.++.+++.+|.++... .++++
T Consensus 343 ~~g~~~eA~~~~~kal~l~P~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~ 417 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELDPRV-TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK----GEFAQ 417 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHH
Confidence 3788999999999998744432 233333444444457899999999999999999999999999999865 67899
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+.+|+++++ +++..++++||.++...+ ++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+..
T Consensus 418 A~~~~~kal~l~P~~~~~~~~la~~~~~~g----~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~ 489 (615)
T TIGR00990 418 AGKDYQKSIDLDPDFIFSHIQLGVTQYKEG----SIASSMATFRRCKKNFPEAPDVYNYYGELLLD----QNKFDEAIEK 489 (615)
T ss_pred HHHHHHHHHHcCccCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHH
Confidence 9999999985 568999999999999844 459999999999886 689999999999999 8999999999
Q ss_pred HHHHHHcCC--HH------HHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHH
Q 023425 185 FHRASEKGH--AG------AAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFE 248 (282)
Q Consensus 185 ~~~A~~~g~--~~------a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~ 248 (282)
|++|++... .. ...+.+..++. ..+++++|..++++++. .++..+|. ...+++++|+.+|+
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~---~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQ---WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999988632 11 22232333322 15799999999999986 35667774 47889999999999
Q ss_pred HHHHhcc
Q 023425 249 VAAQAGC 255 (282)
Q Consensus 249 ~Aa~~g~ 255 (282)
+|++...
T Consensus 567 ~A~~l~~ 573 (615)
T TIGR00990 567 RAAELAR 573 (615)
T ss_pred HHHHHhc
Confidence 9998764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-14 Score=127.37 Aligned_cols=193 Identities=19% Similarity=0.192 Sum_probs=161.2
Q ss_pred hcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC
Q 023425 59 LNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVEN 136 (282)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~ 136 (282)
++.+...++.++|+.+|++|+.++|+...+|..+|.=|..- ++...|+..|++|++. -|-.|+|.||..|.-
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEm----KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-- 410 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEM----KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-- 410 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHh----cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH--
Confidence 34455568899999999999999999999999999998866 5669999999999965 578899999999988
Q ss_pred CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHcCCCCcc
Q 023425 137 DYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHA--GAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~--~a~~~Lg~~y~~g~g~~~ 212 (282)
.+-+--|+.||++|... +++.-+..||.||.. ..+.++|+++|.+|+.-|+. .+++.||.+|.+ .+
T Consensus 411 --m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~dte~~~l~~LakLye~----l~ 480 (559)
T KOG1155|consen 411 --MKMHFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE----LK 480 (559)
T ss_pred --hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHHHHHHHHHhccccchHHHHHHHHHHHH----HH
Confidence 44448999999999987 899999999999998 99999999999999999987 899999999999 89
Q ss_pred cHHHHHHHHHHHHHHH-------------chhch--hccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAAKKA-------------RANLE--SNLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEE 267 (282)
Q Consensus 213 ~~~~A~~~~~~a~~~a-------------~~~lg--~~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~ 267 (282)
+.++|..+|++-++.. ..-|. ....+|+++|..|..++...+ -++|...+..|..
T Consensus 481 d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRK 552 (559)
T ss_pred hHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 9999999999998732 22233 236678999998888887764 2334444444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-13 Score=118.06 Aligned_cols=223 Identities=12% Similarity=-0.010 Sum_probs=157.7
Q ss_pred cchHHHHHHHHHHhhhh---hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 31 SRNKKAMELIAKGWSAL---KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
...+.++.-+.+.+... .......++..|..+...++.++|+..|+++++.+|+++.+++.+|.++... .+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~----g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQA----GNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCHH
Confidence 34577888888877522 2333455666666666678899999999999999999999999999999966 6789
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCccCHHHHHHH
Q 023425 108 MGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGT-VYLTGDCVKKDIASALWC 184 (282)
Q Consensus 108 ~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~-~y~~g~g~~~d~~~A~~~ 184 (282)
+|+..|.++++ ++++.+++++|.++...++. ++|+..|+++.+.........+.. +... .+++++|+..
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~----~eA~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~A~~~ 187 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY----ELAQDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQAKEN 187 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHHHHHH
Confidence 99999999975 67899999999999985555 999999999999843222222222 2233 5789999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHH----HHHH------HHchhchh--ccCCCHHHHHHHHHHHHH
Q 023425 185 FHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRV----SAAK------KARANLES--NLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 185 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~----~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~ 252 (282)
|.+++...++..+. .+..+..-... +...++..+. .+.+ .+++++|. ...+++++|+.+|++|.+
T Consensus 188 l~~~~~~~~~~~~~-~~~~~~~lg~~--~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 188 LKQRYEKLDKEQWG-WNIVEFYLGKI--SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHhhCCccccH-HHHHHHHccCC--CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98888765554433 23333221111 1122332222 2222 58999994 488899999999999999
Q ss_pred hcc-HHHHHHHHHHHHH
Q 023425 253 AGC-NLGLRWLQRIEEE 268 (282)
Q Consensus 253 ~g~-~~a~~~l~~l~~~ 268 (282)
... ....+.++.++..
T Consensus 265 ~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 265 NNVYNFVEHRYALLELA 281 (296)
T ss_pred hCCchHHHHHHHHHHHH
Confidence 884 4455555544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=122.15 Aligned_cols=197 Identities=15% Similarity=0.068 Sum_probs=159.9
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+..++|+.+|..++...+.. ...--..|..+-..+|...|+..|++|++.+|-|-.|||.||.+|.-- .-..=|
T Consensus 343 r~eHEKAv~YFkRALkLNp~~-~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim----~Mh~Ya 417 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNPKY-LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM----KMHFYA 417 (559)
T ss_pred HHhHHHHHHHHHHHHhcCcch-hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh----cchHHH
Confidence 567899999999999844433 333334455556678999999999999999999999999999999965 445889
Q ss_pred HHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHP--GALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~--~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+.+|++|. ++.|+.-+..||.+|..-+.. ++|+++|++|+..|++ .+++.||.+|.+ .+|.++|..+|
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~----~eAiKCykrai~~~dte~~~l~~LakLye~----l~d~~eAa~~y 489 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEKLNRL----EEAIKCYKRAILLGDTEGSALVRLAKLYEE----LKDLNEAAQYY 489 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhccH----HHHHHHHHHHHhccccchHHHHHHHHHHHH----HHhHHHHHHHH
Confidence 99999997 678999999999999985555 9999999999999887 999999999999 99999999999
Q ss_pred HHHHHc-------C--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHH
Q 023425 186 HRASEK-------G--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 186 ~~A~~~-------g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~ 252 (282)
.+-++- + ...|..-|+..+.. .+|+++|-.|..++..- ....++|...++.-..
T Consensus 490 ek~v~~~~~eg~~~~~t~ka~~fLA~~f~k----~~~~~~As~Ya~~~~~~---------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 490 EKYVEVSELEGEIDDETIKARLFLAEYFKK----MKDFDEASYYATLVLKG---------ETECEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHh----hcchHHHHHHHHHHhcC---------CchHHHHHHHHHHHHH
Confidence 998772 2 25678889999988 88999888877665321 2234566666655443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-12 Score=123.15 Aligned_cols=178 Identities=11% Similarity=-0.003 Sum_probs=140.7
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCC-----CCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCC
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYH-----VPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVEN 136 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~-----~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~ 136 (282)
...++++|+..|++|++.+|+++.++..||.+|.... ....+.++|+..+++|++ ++++.++..+|.++...
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~- 351 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH- 351 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-
Confidence 3467899999999999999999999999998765221 133557899999999984 67899999999998874
Q ss_pred CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcc
Q 023425 137 DYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~ 212 (282)
.++++|+.+|++|.+. +++.+++.+|.++.. .+++++|+.++++|++.. ++.+.+.++.++.. .+
T Consensus 352 ---g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g 420 (553)
T PRK12370 352 ---SEYIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLEEALQTINECLKLDPTRAAAGITKLWITYY----HT 420 (553)
T ss_pred ---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----cc
Confidence 4459999999999887 688999999999998 899999999999998864 45555555554444 46
Q ss_pred cHHHHHHHHHHHHHH-------Hchhchh--ccCCCHHHHHHHHHHHHHh
Q 023425 213 CLTKLNAKRVSAAKK-------ARANLES--NLMNPVEKAKEQFEVAAQA 253 (282)
Q Consensus 213 ~~~~A~~~~~~a~~~-------a~~~lg~--~~~~~~~~A~~~~~~Aa~~ 253 (282)
++++|+.+++++... ++.++|. ...+++++|..++.+....
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 788999999988652 4556773 3688999999999886543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-12 Score=122.02 Aligned_cols=181 Identities=13% Similarity=-0.007 Sum_probs=144.0
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHH------HHHHhhc--CCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRV------IDYCELN--DRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV 101 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~ 101 (282)
.+..++|++.+.+++...+..... .+...+. .....+++++|+..+++|++.+|+++.++..+|.++...
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~-- 351 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH-- 351 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--
Confidence 455789999999988755433211 1111111 122456789999999999999999999999999998855
Q ss_pred CCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC
Q 023425 102 PGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKD 177 (282)
Q Consensus 102 ~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d 177 (282)
.++++|+..|++|+ .++++.+++.+|.++...+.. ++|+.+|+++.+. .++.+.+.++.+++. .++
T Consensus 352 --g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~----~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~ 421 (553)
T PRK12370 352 --SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQL----EEALQTINECLKLDPTRAAAGITKLWITYY----HTG 421 (553)
T ss_pred --cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHhcCCCChhhHHHHHHHHHh----ccC
Confidence 57799999999997 467899999999999985554 9999999999998 456666666666665 678
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 178 IASALWCFHRASEK---GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 178 ~~~A~~~~~~A~~~---g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+++|+.++++++.. +++.++.++|.+|.. .+++++|..++++...
T Consensus 422 ~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~----~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 422 IDDAIRLGDELRSQHLQDNPILLSMQVMFLSL----KGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHHHHHHHHhccccCHHHHHHHHHHHHh----CCCHHHHHHHHHHhhh
Confidence 99999999999864 568889999999987 8999999999988765
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-12 Score=130.42 Aligned_cols=227 Identities=13% Similarity=0.027 Sum_probs=162.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHH-------------HHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDR-------------VIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLH 96 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~ 96 (282)
.+++++|++.|.+++...+.... ......+......+++++|+..|+++++.+|+++.+++.||.++
T Consensus 316 ~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~ 395 (1157)
T PRK11447 316 QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVA 395 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 67889999999888764442211 01112222333457799999999999999999999999999999
Q ss_pred hcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCC-------------------------------------
Q 023425 97 LKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVEND------------------------------------- 137 (282)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~------------------------------------- 137 (282)
... .++++|+.+|+++++ ++++.++..|+.+|..+..
T Consensus 396 ~~~----g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 396 MAR----KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 866 577999999999985 6788888888877643210
Q ss_pred -CcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcc
Q 023425 138 -YVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 138 -~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~ 212 (282)
...++++|+.+|+++++. +++.+++.||.+|.. .+++++|+..|+++++. +++.+.+.++.++.. .+
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~----~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~ 543 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ----AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG----SD 543 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CC
Confidence 135668899999999887 678899999999998 89999999999998764 578888888877665 45
Q ss_pred cHHHHHHHHHHHHH----------------------------------------------HHchhchh--ccCCCHHHHH
Q 023425 213 CLTKLNAKRVSAAK----------------------------------------------KARANLES--NLMNPVEKAK 244 (282)
Q Consensus 213 ~~~~A~~~~~~a~~----------------------------------------------~a~~~lg~--~~~~~~~~A~ 244 (282)
+.++|+.++++... ..+..+|. ...+++++|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 55556555543210 12233442 3567888888
Q ss_pred HHHHHHHHhc--cHHHHHHHHHHHHH
Q 023425 245 EQFEVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 245 ~~~~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
..|+++.+.. ++.+...++.+...
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888755 55666666666543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-11 Score=120.03 Aligned_cols=157 Identities=13% Similarity=-0.006 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHH
Q 023425 105 CKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIAS 180 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~ 180 (282)
++++|+..|+++++ ++++.++++||.+|...+.......+|+.+|+++++. +++.++..+|.++.. .+++++
T Consensus 227 ~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~e 302 (656)
T PRK15174 227 KYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEK 302 (656)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHH
Confidence 44556666666653 4567777777777776555422223578888888776 677788888888877 778888
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------Hchhch--hccCCCHHHHHHHHHHH
Q 023425 181 ALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARANLE--SNLMNPVEKAKEQFEVA 250 (282)
Q Consensus 181 A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~lg--~~~~~~~~~A~~~~~~A 250 (282)
|+.+++++++. .++.+..++|.+|.. .++++.|+..|+++... ....+| ....+++++|+.+|+++
T Consensus 303 A~~~l~~al~l~P~~~~a~~~La~~l~~----~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 303 AIPLLQQSLATHPDLPYVRAMYARALRQ----VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888887664 457778888888877 67788888888877752 222234 34677888888888888
Q ss_pred HHhc-------cHHHHHHHHHHHHHH
Q 023425 251 AQAG-------CNLGLRWLQRIEEEE 269 (282)
Q Consensus 251 a~~g-------~~~a~~~l~~l~~~~ 269 (282)
++.. ...+...+....+..
T Consensus 379 l~~~P~~~~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 379 IQARASHLPQSFEEGLLALDGQISAV 404 (656)
T ss_pred HHhChhhchhhHHHHHHHHHHHHHhc
Confidence 7764 333444454444433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-11 Score=120.46 Aligned_cols=211 Identities=14% Similarity=-0.026 Sum_probs=111.4
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.+.+.+...+.. ....+..+......+++++|+..|+++++.+|+++.++..+|.++... .+.++|
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~-~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~----g~~~eA 163 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQ-PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLM----DKELQA 163 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----CChHHH
Confidence 566777777777766533322 223333334444456677777777777777777777777777776654 344666
Q ss_pred HHHHHHHH--hCCCHHHHHHHHHHHhcCCCC-------------------------------cCCHHHHHHHHHHHHHc-
Q 023425 110 AALLVDAA--NMGDPDAQYELGCRLRVENDY-------------------------------VQSDQQAFYYIEKAVDQ- 155 (282)
Q Consensus 110 ~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~-------------------------------~~d~~~A~~~~~kAa~~- 155 (282)
+..+++++ .++++.++..++. +...+.. ..++++|+..|.++++.
T Consensus 164 ~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 164 ISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66666554 2345555544433 2221111 12234445555554443
Q ss_pred -CCHHHHHHHHHHHhcCCCCccCHHH----HHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--
Q 023425 156 -LHPGALYLLGTVYLTGDCVKKDIAS----ALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK-- 226 (282)
Q Consensus 156 -g~~~A~~~Lg~~y~~g~g~~~d~~~----A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-- 226 (282)
+++.+++.||.+|.. .+++++ |+.+|+++++. +++.+...+|.++.. .+++++|+.+++++..
T Consensus 243 p~~~~~~~~Lg~~l~~----~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~l~~al~l~ 314 (656)
T PRK15174 243 LDGAALRRSLGLAYYQ----SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAIPLLQQSLATH 314 (656)
T ss_pred CCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 345555555555554 344442 45555555443 345555555555555 4555555555555554
Q ss_pred ----HHchhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 227 ----KARANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 227 ----~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
.++.++|. ...+++++|+..|+++.+..
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23334442 24455556666665555544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.6e-12 Score=123.18 Aligned_cols=194 Identities=18% Similarity=0.070 Sum_probs=137.9
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhc
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRV 134 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 134 (282)
..+......+++++|+.+|+++++.+|+++.+++.++.++... .+.++|+.+|+++++ +.+..++..++.++..
T Consensus 470 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE----GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3334444456788888888888888888888888888887754 456888888888764 4577788888888776
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQV 210 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~ 210 (282)
.+ +.++|+.+|.++... ++....+.++.+|.. .+++++|+.+++++.+. .++.+++.+|.+|..
T Consensus 546 ~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 613 (899)
T TIGR02917 546 TG----NEEEAVAWLEKAAELNPQEIEPALALAQYYLG----KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA---- 613 (899)
T ss_pred cC----CHHHHHHHHHHHHHhCccchhHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----
Confidence 33 447888888887665 456777777777777 77888888888887654 457778888888877
Q ss_pred cccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHH
Q 023425 211 PECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIE 266 (282)
Q Consensus 211 ~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~ 266 (282)
.+++++|+.+|+++.+ .++..+|. ...+++++|+.+|+++.+.. +..+...+..+.
T Consensus 614 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 6778888888888776 24555553 35678888888888887765 334444444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-11 Score=120.96 Aligned_cols=173 Identities=18% Similarity=0.138 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|.++.+++.+|.++... +++++|+.+|+++.+ +.++.++..++.++...+. ++
T Consensus 615 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~ 686 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVM----KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR----TE 686 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----HH
Confidence 4455555555555555555555555555555433 334555555555442 2344444444444443222 24
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-HAGAAIAYGSLLLRGVQVPECLTKLNAK 220 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 220 (282)
+|+.++++..+. .++..+..+|.+|.. .+++++|+.+|+++.... +....+.++.++.. .+++++|...
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 758 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLR----QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA----SGNTAEAVKT 758 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH----CCCHHHHHHH
Confidence 444444443332 234444445555554 555556666665555432 22444455555544 4445555555
Q ss_pred HHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 221 RVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 221 ~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
+++... ..++.+|. ...+++++|..+|+++.+..
T Consensus 759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 555443 23334442 24556666666666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.7e-12 Score=128.13 Aligned_cols=148 Identities=19% Similarity=0.072 Sum_probs=107.5
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC-------
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV------- 101 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~------- 101 (282)
..+++++|++.|.+++...+. .....+..+......+++++|+.+|+++++.+|+++.++..|+.+|.....
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 467899999999998875443 233444555555566889999999999999999999999888887643210
Q ss_pred -------------------------------CCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHH
Q 023425 102 -------------------------------PGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYY 148 (282)
Q Consensus 102 -------------------------------~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~ 148 (282)
...++++|+.+|+++++ ++++.+++.||.+|...+ ++++|+..
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G----~~~~A~~~ 517 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG----QRSQADAL 517 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHH
Confidence 13567899999999874 678999999999998844 45999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 149 IEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 149 ~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
|+++++. +++.+.+.++.++.. .++.++|+.++
T Consensus 518 l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l 552 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHL 552 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHH
Confidence 9998775 567777666655543 34444444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=120.58 Aligned_cols=220 Identities=17% Similarity=0.042 Sum_probs=160.9
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH--------------------------------
Q 023425 33 NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALE-------------------------------- 80 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-------------------------------- 80 (282)
-.+|+..|.+-.+...+. +.+.-..|..+....++++|.++|+.+-.
T Consensus 335 ~~~A~~~~~klp~h~~nt-~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNT-GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 455666666522222222 24444555555556668888887777652
Q ss_pred --cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-
Q 023425 81 --ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ- 155 (282)
Q Consensus 81 --~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~- 155 (282)
.+|..|++|--+|++|... +|.+.|+++|++|+ ++++.-|+.-+|.=+.. ..++++|..+|++|+..
T Consensus 414 i~~~~~sPesWca~GNcfSLQ----kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~----~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQ----KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA----TEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhh----hHHHHHHHHHHHhhccCCccchhhhhcCChhhh----hHHHHhHHHHHHhhhcCC
Confidence 7888899999999998854 78899999999997 45678888888866555 34458999999999887
Q ss_pred -CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------
Q 023425 156 -LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH--AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------ 226 (282)
Q Consensus 156 -g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------ 226 (282)
.|-.|||.||.+|.. .+.++.|..+|++|++-.. .--...+|.++.. .+..++|+..|++|+.
T Consensus 486 ~rhYnAwYGlG~vy~K----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLK----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred chhhHHHHhhhhheec----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCc
Confidence 588999999999998 8889999999999988653 4446678888887 7888999999999987
Q ss_pred HHchhchhc--cCCCHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHH
Q 023425 227 KARANLESN--LMNPVEKAKEQFEVAAQAGC--NLGLRWLQRIEEEE 269 (282)
Q Consensus 227 ~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g~--~~a~~~l~~l~~~~ 269 (282)
...+..+.+ ...++++|+.-+++-.+.-. ....+.++++.+..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 345555533 56678888888887777653 44566677777765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-11 Score=110.81 Aligned_cols=210 Identities=14% Similarity=-0.016 Sum_probs=149.5
Q ss_pred ccchHHHHHHHHHHhhhhhH---HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCH
Q 023425 30 HSRNKKAMELIAKGWSALKE---VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~ 106 (282)
.+++++|++.+.+.+..... .........+..+...+++++|+.+|+++++.+|.+..++..|+.++... +++
T Consensus 82 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----g~~ 157 (389)
T PRK11788 82 RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE----KDW 157 (389)
T ss_pred cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh----chH
Confidence 66788888877776653211 11122333333344456788888888888877777888888888888754 567
Q ss_pred HHHHHHHHHHHhCCC-------HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC
Q 023425 107 AMGAALLVDAANMGD-------PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKD 177 (282)
Q Consensus 107 ~~A~~~~~~Aa~~g~-------~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d 177 (282)
++|+..|+++++.+. ...+..+|.++.. ..++++|+.+|+++.+. .++.+.+.+|.+|.. .++
T Consensus 158 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 229 (389)
T PRK11788 158 QKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAARALLKKALAADPQCVRASILLGDLALA----QGD 229 (389)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----CCC
Confidence 888888888876431 2245567777777 44458899999888775 467788888888888 788
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH-----Hchhch--hccCCCHHHHHHHH
Q 023425 178 IASALWCFHRASEKGH---AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-----ARANLE--SNLMNPVEKAKEQF 247 (282)
Q Consensus 178 ~~~A~~~~~~A~~~g~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----a~~~lg--~~~~~~~~~A~~~~ 247 (282)
+++|+.+|+++.+.+. +.++..++.+|.. .+++++|..+++++... ....++ ....+++++|+.+|
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQA----LGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999998887542 3456788888877 67888888888888762 223444 33677889999999
Q ss_pred HHHHHhcc
Q 023425 248 EVAAQAGC 255 (282)
Q Consensus 248 ~~Aa~~g~ 255 (282)
+++.+...
T Consensus 306 ~~~l~~~P 313 (389)
T PRK11788 306 REQLRRHP 313 (389)
T ss_pred HHHHHhCc
Confidence 98888753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-11 Score=102.15 Aligned_cols=146 Identities=19% Similarity=0.095 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|.++.++..+|.++... .++++|+.+|+++.+ +.++.+++++|.++.. ..+++
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~g~~~ 116 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQL----GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ----QGKYE 116 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cccHH
Confidence 4599999999999999999999999999999866 577999999999985 4678999999999988 44559
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 144 QAFYYIEKAVDQ----LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 144 ~A~~~~~kAa~~----g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
+|+.+|.++... ..+..+..+|.+|.. .+++++|..+|.+++.. +++.++..+|.++.. .+++++|
T Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A 188 (234)
T TIGR02521 117 QAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDPQRPESLLELAELYYL----RGQYKDA 188 (234)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH----cCCHHHH
Confidence 999999999875 356788999999998 89999999999999875 468889999999998 8899999
Q ss_pred HHHHHHHHHH
Q 023425 218 NAKRVSAAKK 227 (282)
Q Consensus 218 ~~~~~~a~~~ 227 (282)
..+++++...
T Consensus 189 ~~~~~~~~~~ 198 (234)
T TIGR02521 189 RAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHh
Confidence 9999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-11 Score=101.40 Aligned_cols=177 Identities=12% Similarity=0.024 Sum_probs=143.2
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.+.+++...+. ........+......+++++|+.+|+++++..|.++.+++++|.++... .++++|
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----g~~~~A 118 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ----GKYEQA 118 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----ccHHHH
Confidence 67899999999998764432 2334444445555567899999999999999999999999999999865 578999
Q ss_pred HHHHHHHHhC----CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 110 AALLVDAANM----GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 110 ~~~~~~Aa~~----g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
+.+|.++++. ..+..++++|.++... .++++|..+|.++... +++.++..+|.++.. .+++++|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~ 190 (234)
T TIGR02521 119 MQQFEQAIEDPLYPQPARSLENAGLCALKA----GDFDKAEKYLTRALQIDPQRPESLLELAELYYL----RGQYKDARA 190 (234)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH----cCCHHHHHH
Confidence 9999999863 4567899999999884 4559999999999986 578899999999999 899999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 023425 184 CFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVS 223 (282)
Q Consensus 184 ~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 223 (282)
+++++.+. .++..+..++.++.. .++.+.|..+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~ 228 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARA----LGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHH
Confidence 99999775 456777777887776 6667666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-11 Score=110.50 Aligned_cols=222 Identities=16% Similarity=-0.003 Sum_probs=144.6
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHhcCCCCCc
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN----THARYWLSKLHLKYHVPGA 104 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~----~~a~~~Lg~~~~~~~~~~~ 104 (282)
..+++++|++.+.+.+...+. .....+..+......+++++|+..+++++...+.. ..+++.||.+|... .
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~----g 121 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA----G 121 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC----C
Confidence 456777788888777764332 23334444445555677888888888776532222 24567777777754 4
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHhcCCCCc
Q 023425 105 CKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH-------PGALYLLGTVYLTGDCVK 175 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~-------~~A~~~Lg~~y~~g~g~~ 175 (282)
++++|+.+|+++.+. .+..++..|+.++.. ..++++|+..|+++.+.+. ...+..+|.++.. .
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~ 193 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ----EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----R 193 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----C
Confidence 668888888887753 456777778877777 4445888888888776531 1234567777777 7
Q ss_pred cCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH-------Hchhch--hccCCCHHHHH
Q 023425 176 KDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-------ARANLE--SNLMNPVEKAK 244 (282)
Q Consensus 176 ~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------a~~~lg--~~~~~~~~~A~ 244 (282)
+++++|+.+|+++++. .+..+.+.+|.+|.. .+++++|..+++++... .+..++ ....+++++|+
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALA----QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887654 356777788888877 67788888888887752 223344 33667788888
Q ss_pred HHHHHHHHhccH-HHHHHHHHHHH
Q 023425 245 EQFEVAAQAGCN-LGLRWLQRIEE 267 (282)
Q Consensus 245 ~~~~~Aa~~g~~-~a~~~l~~l~~ 267 (282)
.+++++.+.... .....++.+..
T Consensus 270 ~~l~~~~~~~p~~~~~~~la~~~~ 293 (389)
T PRK11788 270 EFLRRALEEYPGADLLLALAQLLE 293 (389)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHH
Confidence 888887776522 22244444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-11 Score=120.55 Aligned_cols=209 Identities=11% Similarity=0.019 Sum_probs=158.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.++..+|++.+.+.+...+.... .+..+......+++++|+.+|++++.. |.++.+++.+|.++... .+.++|
T Consensus 489 ~~~~~eAi~a~~~Al~~~Pd~~~--~L~lA~al~~~Gr~eeAi~~~rka~~~-~p~~~a~~~la~all~~----Gd~~eA 561 (987)
T PRK09782 489 DTLPGVALYAWLQAEQRQPDAWQ--HRAVAYQAYQVEDYATALAAWQKISLH-DMSNEDLLAAANTAQAA----GNGAAR 561 (987)
T ss_pred hCCcHHHHHHHHHHHHhCCchHH--HHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHC----CCHHHH
Confidence 46778899988877765554221 222222223457799999999998755 44456678888888765 577899
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 110 AALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 110 ~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
+.+|+++++. .+......++..... ..++++|+.+|+++++. -++.+++++|.++.. .+++++|+.+|+
T Consensus 562 ~~~l~qAL~l~P~~~~l~~~La~~l~~----~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~----lG~~deA~~~l~ 633 (987)
T PRK09782 562 DRWLQQAEQRGLGDNALYWWLHAQRYI----PGQPELALNDLTRSLNIAPSANAYVARATIYRQ----RHNVPAAVSDLR 633 (987)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHH
Confidence 9999999865 355555555554444 34559999999999986 248899999999998 899999999999
Q ss_pred HHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhccH
Q 023425 187 RASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 187 ~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g~~ 256 (282)
+++.. +++.++.++|.++.. .+++++|+..|+++++ .+++++|. ...+++++|+.+|++|++....
T Consensus 634 ~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 634 AALELEPNNSNYQAALGYALWD----SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99775 578899999999988 7889999999999987 47788884 4788999999999999887743
Q ss_pred H
Q 023425 257 L 257 (282)
Q Consensus 257 ~ 257 (282)
.
T Consensus 710 ~ 710 (987)
T PRK09782 710 Q 710 (987)
T ss_pred C
Confidence 3
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-12 Score=115.60 Aligned_cols=185 Identities=17% Similarity=0.031 Sum_probs=158.3
Q ss_pred hcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCC
Q 023425 59 LNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVEN 136 (282)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~ 136 (282)
|+-+...++.+.|++.|++|+.+||+.+-|+..+|.=+... .++++|..+|++|+. +.+-.|||-||.+|...+
T Consensus 428 GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~----ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 428 GNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIAT----EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred cchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhh----HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc
Confidence 33444568999999999999999999999999999877644 677999999999984 568999999999999966
Q ss_pred CCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcc
Q 023425 137 DYVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~ 212 (282)
.. +.|.-+|++|++.+ +..-+..+|.++.. .++.++|+.+|++|+.. .++-+.|.-|.++.. ..
T Consensus 504 k~----e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~----~~ 571 (638)
T KOG1126|consen 504 KL----EFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS----LG 571 (638)
T ss_pred hh----hHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh----hc
Confidence 66 99999999999984 66677889999999 99999999999999776 578899999999998 78
Q ss_pred cHHHHHHHHHHHHH------HHchhchhc--cCCCHHHHHHHHHHHHHhccHHHH
Q 023425 213 CLTKLNAKRVSAAK------KARANLESN--LMNPVEKAKEQFEVAAQAGCNLGL 259 (282)
Q Consensus 213 ~~~~A~~~~~~a~~------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g~~~a~ 259 (282)
++++|+.-++..-+ ..++-+|.+ ..++.+.|+..|.-|.++...-+.
T Consensus 572 ~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 572 RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 89999888887655 477788855 667889999999999998876665
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-11 Score=119.01 Aligned_cols=207 Identities=10% Similarity=-0.024 Sum_probs=159.5
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.+.+....-... ...+..+......+++++|+.+|+++++.+|.++.....++...... .++++|
T Consensus 522 ~Gr~eeAi~~~rka~~~~p~~--~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~----Gr~~eA 595 (987)
T PRK09782 522 VEDYATALAAWQKISLHDMSN--EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP----GQPELA 595 (987)
T ss_pred CCCHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC----CCHHHH
Confidence 678999999998865532221 11233333344457899999999999999888888777776655433 578999
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 110 AALLVDAANMG-DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 110 ~~~~~~Aa~~g-~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
+.+|+++++.. ++++++++|.++...+.. ++|+.+|++++.. +++.++.+||.++.. .+++++|+..|+
T Consensus 596 l~~~~~AL~l~P~~~a~~~LA~~l~~lG~~----deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~ 667 (987)
T PRK09782 596 LNDLTRSLNIAPSANAYVARATIYRQRHNV----PAAVSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSREMLE 667 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHH
Confidence 99999998532 489999999999995554 9999999999988 789999999999999 899999999999
Q ss_pred HHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------Hchhchhc--cCCCHHHHHHHHHHHHHhc
Q 023425 187 RASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARANLESN--LMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 187 ~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~lg~~--~~~~~~~A~~~~~~Aa~~g 254 (282)
+|++. +++.+++++|.++.. .++++.|..+|+++++. .....|.+ ...++..|.+-|.++....
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~----lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQR----LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99875 689999999999998 89999999999999873 22233322 2234555555555555444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-11 Score=110.11 Aligned_cols=178 Identities=17% Similarity=0.075 Sum_probs=148.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCC----
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDY---- 138 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~---- 138 (282)
.+++.+|.-.|+.|+.-+|+|.+||-.||...... .+...|+.-++++.+ +++.+|+..||..|...+.-
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN----E~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN----ENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc----cchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 47799999999999999999999999999998865 455889999999975 67999999999887431100
Q ss_pred ---------------------c---------C---CHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHH
Q 023425 139 ---------------------V---------Q---SDQQAFYYIEKAVDQ----LHPGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 139 ---------------------~---------~---d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
+ . ....-.++|..|+.+ -+++-+.-||.+|.. .+++++|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l----s~efdra 449 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL----SGEFDRA 449 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc----chHHHHH
Confidence 0 0 123455667777765 368999999999998 8999999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhch--hccCCCHHHHHHHHHHHH
Q 023425 182 LWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLE--SNLMNPVEKAKEQFEVAA 251 (282)
Q Consensus 182 ~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg--~~~~~~~~~A~~~~~~Aa 251 (282)
+.||+.|+.- .+..-+.+||..+.. ....++|+..|.+|.+ +++|||| .+-.+.|++|+.+|..|+
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN----~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLAN----GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcC----CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999875 578889999999999 4677899999999998 6999999 457889999999999999
Q ss_pred Hhc
Q 023425 252 QAG 254 (282)
Q Consensus 252 ~~g 254 (282)
.+-
T Consensus 526 ~mq 528 (579)
T KOG1125|consen 526 SMQ 528 (579)
T ss_pred Hhh
Confidence 865
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-10 Score=95.64 Aligned_cols=145 Identities=19% Similarity=0.102 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+|+..|.+-+++|++.||.++.+|..++.+|... .+.+.|.+.|++|+. +++.+-++|.|-.+...+.. +
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~----Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~----~ 120 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKL----GENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP----E 120 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc----CChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh----H
Confidence 4599999999999999999999999999999976 455999999999984 67999999999999886655 9
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 144 QAFYYIEKAVDQ----LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 144 ~A~~~~~kAa~~----g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
+|..+|.+|++. ..+..+-|+|.|-+. .+++++|.++|+++++. ..+.+...++..++. .+++..|
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~----~~~y~~A 192 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELDPQFPPALLELARLHYK----AGDYAPA 192 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh----cccchHH
Confidence 999999999997 457889999999999 89999999999999886 568889999999998 8888888
Q ss_pred HHHHHHHHH
Q 023425 218 NAKRVSAAK 226 (282)
Q Consensus 218 ~~~~~~a~~ 226 (282)
..++++-..
T Consensus 193 r~~~~~~~~ 201 (250)
T COG3063 193 RLYLERYQQ 201 (250)
T ss_pred HHHHHHHHh
Confidence 888877644
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-10 Score=106.02 Aligned_cols=187 Identities=18% Similarity=0.084 Sum_probs=158.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+.+++|.++|.||..+||..+.||..+|..+... .+.+.|+..|..|++. |.-.-...+|.-|.. ..+.+
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e----~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~----t~n~k 397 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE----GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR----TNNLK 397 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc----chHHHHHHHHHHHHHhccCCcchHHHHHHHHHH----hccHH
Confidence 3489999999999999999999999999999844 5679999999999974 877778889998887 55569
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----C-----CHHHHHHHHHHHHcCCCCcc
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----G-----HAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g-----~~~a~~~Lg~~y~~g~g~~~ 212 (282)
.|-++|..|... .+|--...+|.+.+. .+.+.+|..||+++... + ......|||..|.+ .+
T Consensus 398 LAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk----l~ 469 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK----LN 469 (611)
T ss_pred HHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH----Hh
Confidence 999999999876 789999999999988 78999999999999742 1 34558999999998 88
Q ss_pred cHHHHHHHHHHHHH------HHchhchhc--cCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAAK------KARANLESN--LMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 213 ~~~~A~~~~~~a~~------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
.++.|+.+|+++.. ..+..+|.+ ..++++.|+.+|.+|.-.. +..+...|....+.
T Consensus 470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 89999999999987 577788855 8999999999999998876 44566666665554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-11 Score=108.06 Aligned_cols=216 Identities=16% Similarity=0.128 Sum_probs=174.4
Q ss_pred hhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCC
Q 023425 23 QHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVP 102 (282)
Q Consensus 23 ~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~ 102 (282)
.+....+.++.-.|.+.+.++|+...... ..++..+..+--..+.++-.+.|.+|..++|.+|+.+|+-|.|+...
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL--- 407 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL--- 407 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH---
Confidence 34556678888899998888887444322 22333333444456789999999999999999999999999999855
Q ss_pred CcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCH
Q 023425 103 GACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDI 178 (282)
Q Consensus 103 ~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~ 178 (282)
++++.|+.=|.+|+.. .++-++..|+...++...+ ++++..|+.+.+. ..++.+...|.++.+ .+++
T Consensus 408 -~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~----~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqF 478 (606)
T KOG0547|consen 408 -QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKI----AESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQF 478 (606)
T ss_pred -HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhH
Confidence 6789999999999854 5778888899887775555 9999999999987 889999999999999 9999
Q ss_pred HHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc--cCCCHHH
Q 023425 179 ASALWCFHRASEKGH--------AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN--LMNPVEK 242 (282)
Q Consensus 179 ~~A~~~~~~A~~~g~--------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~--~~~~~~~ 242 (282)
++|++.|.+|++.-. +..+.+-|.+..+ ..+|+..|...+++|++ .+.-.||.+ ..++.++
T Consensus 479 d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred HHHHHHHHHHHhhccccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHH
Confidence 999999999988643 4445555666655 36999999999999987 677788854 6678999
Q ss_pred HHHHHHHHHHhc
Q 023425 243 AKEQFEVAAQAG 254 (282)
Q Consensus 243 A~~~~~~Aa~~g 254 (282)
|+++|++|+.+-
T Consensus 556 AielFEksa~lA 567 (606)
T KOG0547|consen 556 AIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHH
Confidence 999999999866
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-11 Score=105.59 Aligned_cols=230 Identities=19% Similarity=0.055 Sum_probs=93.7
Q ss_pred hcccchHHHHHHHHHHhhhh-hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCH
Q 023425 28 WLHSRNKKAMELIAKGWSAL-KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~ 106 (282)
...+++++|++.+.+++... ......+....+.-....+++++|+..|++.+..++.++..+..|+.++.. .++
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~-----~~~ 93 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQD-----GDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccc
Confidence 34678999999998877655 333333444444445566899999999999999999999999888888433 467
Q ss_pred HHHHHHHHHHHh-CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHH
Q 023425 107 AMGAALLVDAAN-MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHPGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 107 ~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
++|+..++++.+ .+++.....+..++.. ..+++++...+.++... .++..+..+|.++.. .++.++|
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A 165 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYR----LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LGDPDKA 165 (280)
T ss_dssp ------------------------H-HHH----TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CCHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHH----HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCHHHH
Confidence 889998888875 3567777677777777 45569999999987654 467888999999999 8999999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhch--hccCCCHHHHHHHHHHHH
Q 023425 182 LWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLE--SNLMNPVEKAKEQFEVAA 251 (282)
Q Consensus 182 ~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg--~~~~~~~~~A~~~~~~Aa 251 (282)
+.+|++|++. +++.+...++.++.. .++.+++...++.... ..+..+| ....+++++|+.||+++.
T Consensus 166 ~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 166 LRDYRKALELDPDDPDARNALAWLLID----MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 9999999885 568889999999987 6677765555544433 2334455 447789999999999999
Q ss_pred Hhc--cHHHHHHHHHHHHHHhhcCC
Q 023425 252 QAG--CNLGLRWLQRIEEEEKRLLT 274 (282)
Q Consensus 252 ~~g--~~~a~~~l~~l~~~~~~~~~ 274 (282)
+.. ++.....++.+.....+...
T Consensus 242 ~~~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 242 KLNPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HHSTT-HHHHHHHHHHHT-------
T ss_pred ccccccccccccccccccccccccc
Confidence 954 77788888887776544433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-11 Score=103.79 Aligned_cols=180 Identities=12% Similarity=-0.085 Sum_probs=130.0
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.++.++|+..|.+++...+ .....++..+......+++++|+..|+++++.+|+++.+++++|.++... +++++|
T Consensus 77 ~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~----g~~~eA 151 (296)
T PRK11189 77 LGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG----GRYELA 151 (296)
T ss_pred CCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 5788999999999887443 34556666767777778999999999999999999999999999999866 577999
Q ss_pred HHHHHHHHhCCCHHHHHHHHH-HHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCCccCHHHHHHHHHH
Q 023425 110 AALLVDAANMGDPDAQYELGC-RLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLT-GDCVKKDIASALWCFHR 187 (282)
Q Consensus 110 ~~~~~~Aa~~g~~~A~~~Lg~-~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~-g~g~~~d~~~A~~~~~~ 187 (282)
+..|+++++....+....+.. +... ..+.++|+..|.+++...+++.+. ++.++.. | ..+..+++..+.+
T Consensus 152 ~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg---~~~~~~~~~~~~~ 223 (296)
T PRK11189 152 QDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLG---KISEETLMERLKA 223 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHHHHHHHHHHHhhCCccccH-HHHHHHHcc---CCCHHHHHHHHHh
Confidence 999999986542222222222 2222 345699999998888765554443 3433332 1 1222344444443
Q ss_pred HH----H--cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 188 AS----E--KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 188 A~----~--~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+. + ...++++++||.+|.. .+++++|+.+|++|++
T Consensus 224 ~~~~~~~l~~~~~ea~~~Lg~~~~~----~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 224 GATDNTELAERLCETYFYLAKYYLS----LGDLDEAAALFKLALA 264 (296)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 32 2 2356899999999998 8999999999999976
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-10 Score=107.47 Aligned_cols=232 Identities=16% Similarity=0.052 Sum_probs=156.6
Q ss_pred ccchHHHHHHHHHHhhhh--hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHhcCCCCCcCH
Q 023425 30 HSRNKKAMELIAKGWSAL--KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN-THARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~-~~a~~~Lg~~~~~~~~~~~~~ 106 (282)
++++..++++...++..- .......+|..+..++..+|+++|..+|.+++..++++ .-+++.||.+|... .+.
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~----~dl 358 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR----GDL 358 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh----chH
Confidence 677888887776665422 12334458888999999999999999999999988888 78889999999866 577
Q ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC---------
Q 023425 107 AMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDC--------- 173 (282)
Q Consensus 107 ~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g--------- 173 (282)
+.|+.+|++..+ +++.+.+..||.+|......+...++|..+..++.+. .+.+|+..|+.+|..+..
T Consensus 359 e~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~ 438 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGN 438 (1018)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 999999999874 6888999999998876533333346677777777665 456666666666664210
Q ss_pred -------------------------CccCHHHHHHHHHHHHHc----CC--------HHHHHHHHHHHHcCCCCcccHHH
Q 023425 174 -------------------------VKKDIASALWCFHRASEK----GH--------AGAAIAYGSLLLRGVQVPECLTK 216 (282)
Q Consensus 174 -------------------------~~~d~~~A~~~~~~A~~~----g~--------~~a~~~Lg~~y~~g~g~~~~~~~ 216 (282)
..+++.+|...|..|... -+ ..-.|||+.+++. ..+.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~----l~~~~~ 514 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE----LHDTEV 514 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh----hhhhhH
Confidence 145555555555555332 01 1125556666555 455555
Q ss_pred HHHHHHHHHH------HHchhchhc--cCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 217 LNAKRVSAAK------KARANLESN--LMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 217 A~~~~~~a~~------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
|.+.|+.... .++..+|.+ ...+..+|..|+..+.+.. +|.+...++.++...
T Consensus 515 A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 515 AEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhh
Confidence 5555555554 234445533 3457788999999888755 788888888655433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-10 Score=109.98 Aligned_cols=222 Identities=16% Similarity=0.171 Sum_probs=172.0
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHH----HHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcC
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVI----DYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGAC 105 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~ 105 (282)
.++|..|+.+|.+++...+...... ++|... .++.+.|+..|++|++++|.+..++..||.+-..-... ..
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k----l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~-~s 251 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIGIGHCFWK----LGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDS-DS 251 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh----ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccch-HH
Confidence 7889999999999877555433322 333322 35688999999999999999999999999997755433 67
Q ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCH
Q 023425 106 KAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-----HPGALYLLGTVYLTGDCVKKDI 178 (282)
Q Consensus 106 ~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~g~g~~~d~ 178 (282)
+..++..+.+|- .+.+|.+...|+..|+. .+|++.+..+..-++..- -.+++|++|.+|.. .+|+
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha----~Gd~ 323 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA----QGDF 323 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh----hccH
Confidence 899999999996 45699999999999888 666699998888887752 35678999999999 9999
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------HchhchhccC------CCHHHH
Q 023425 179 ASALWCFHRASEK---GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARANLESNLM------NPVEKA 243 (282)
Q Consensus 179 ~~A~~~~~~A~~~---g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~lg~~~~------~~~~~A 243 (282)
++|..||.+|... ++..+.+.||.+|.. ..+++.|...|++.... ...-||.+.. -..++|
T Consensus 324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~----~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIK----RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred HHHHHHHHHHHccCCCCccccccchhHHHHH----hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 9999999999664 347789999999998 89999999999998872 3334553311 135788
Q ss_pred HHHHHHHHHhc--cHHHHHHHHHHHHH
Q 023425 244 KEQFEVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 244 ~~~~~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
..+..++.+.- +..|+..++.+.+.
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 88888888766 55566666666653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-09 Score=94.55 Aligned_cols=150 Identities=16% Similarity=0.087 Sum_probs=76.3
Q ss_pred cCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH--HHhCCCHHHHHHHHHHHhcCCC
Q 023425 60 NDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVD--AANMGDPDAQYELGCRLRVEND 137 (282)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~--Aa~~g~~~A~~~Lg~~y~~g~~ 137 (282)
+.....+|+++|.+.|+.|+.-+....+|.|++|.-+... .+.++|+.+|.+ ++-.++.+-.+.++.+|..
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~----~~ldeald~f~klh~il~nn~evl~qianiye~--- 570 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEAL----GNLDEALDCFLKLHAILLNNAEVLVQIANIYEL--- 570 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHh----cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 3333345555555555555554445555555555555533 233555555554 2344555555555555554
Q ss_pred CcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCccc
Q 023425 138 YVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPEC 213 (282)
Q Consensus 138 ~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~ 213 (282)
.+|..+|++||.++... ++|..+..||.+|-. .+|..+|+.|+-.+-.. -+.+..-.||..|.. .+-
T Consensus 571 -led~aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~~ydsyryfp~nie~iewl~ayyid----tqf 641 (840)
T KOG2003|consen 571 -LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID----TQF 641 (840)
T ss_pred -hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhcccccCcchHHHHHHHHHHHh----hHH
Confidence 44445555555555444 455555555555555 55555555554444332 234444445555554 444
Q ss_pred HHHHHHHHHHHH
Q 023425 214 LTKLNAKRVSAA 225 (282)
Q Consensus 214 ~~~A~~~~~~a~ 225 (282)
.++|+.||++|+
T Consensus 642 ~ekai~y~ekaa 653 (840)
T KOG2003|consen 642 SEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHHHHH
Confidence 455555555553
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7e-10 Score=91.79 Aligned_cols=120 Identities=15% Similarity=0.059 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHH-hcCCCCcCC
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRL-RVENDYVQS 141 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y-~~g~~~~~d 141 (282)
..+.++++..++++++.+|+++++|+.||.+|... .++++|+..|++|.+ +++++.+..+|.++ ...++. +
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~----g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~--~ 125 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWR----NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH--M 125 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC--C
Confidence 56689999999999999999999999999999866 677999999999985 67999999999864 453321 2
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCH
Q 023425 142 DQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHA 194 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~ 194 (282)
.++|...+.++.+. +++.+++.||..++. .+++++|+.+|+++++...+
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence 38999999999988 789999999999999 99999999999999887543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.9e-09 Score=102.60 Aligned_cols=249 Identities=12% Similarity=-0.007 Sum_probs=132.2
Q ss_pred hhhhhhhHHhhhhhhhcchhhhhhc------ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHH
Q 023425 5 ISKASTLKSAALGLLQSNQHQKRWL------HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELA 78 (282)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 78 (282)
...|.+++..++.+-..+......+ .+++++|++.+.+.+...+.... .+..+......+++++|+..|+++
T Consensus 65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~~g~~~~Al~~l~~a 142 (765)
T PRK10049 65 WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN--LLALAYVYKRAGRHWDELRAMTQA 142 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555444433333222222 56677777777776654333222 333444444556677777777777
Q ss_pred HHcCCCCHHHHHHHHHHHhcCCCCCc---------------------------------------CH---HHHHHHHHHH
Q 023425 79 LEADNSNTHARYWLSKLHLKYHVPGA---------------------------------------CK---AMGAALLVDA 116 (282)
Q Consensus 79 ~~~~~g~~~a~~~Lg~~~~~~~~~~~---------------------------------------~~---~~A~~~~~~A 116 (282)
++..|+++.+++.++.++...+.... .+ ++|+..|++.
T Consensus 143 l~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 143 LPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 77777777777777776654322110 00 2334444444
Q ss_pred HhC--CCHH-------HHHH-HHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 117 ANM--GDPD-------AQYE-LGCRLRVENDYVQSDQQAFYYIEKAVDQL---HPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 117 a~~--g~~~-------A~~~-Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
++. .+|+ +... +|.++.. .+.++|+..|+++.+.+ ...+...+|.+|.. .+++++|+.
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~-----g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~----~g~~e~A~~ 293 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLAR-----DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK----LHQPEKAQS 293 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh----cCCcHHHHH
Confidence 321 1221 1111 3333322 23467777777766654 22345556777776 677777777
Q ss_pred HHHHHHHcCC------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH---------------------Hchhch--h
Q 023425 184 CFHRASEKGH------AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK---------------------ARANLE--S 234 (282)
Q Consensus 184 ~~~~A~~~g~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------------a~~~lg--~ 234 (282)
+|+++++... ......|+..+.. .+++++|..+++++... ++..++ .
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~----~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLE----SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHh----cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 7777665431 2345556666655 66677777777666552 112222 2
Q ss_pred ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Q 023425 235 NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 235 ~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
...+++++|+..+++++... ++.....++.+...
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 25566677777777666643 45555555555543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-09 Score=93.39 Aligned_cols=186 Identities=13% Similarity=0.092 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
-+.+|.+.++.+++. ..+++.+..|+.+|..- .....|+..|....+ +++..-....+.++.. ..+.++
T Consensus 238 m~r~AekqlqssL~q-~~~~dTfllLskvY~ri----dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea----m~~~~~ 308 (478)
T KOG1129|consen 238 MPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRI----DQPERALLVIGEGLDSFPFDVTYLLGQARIHEA----MEQQED 308 (478)
T ss_pred ChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHh----ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH----HHhHHH
Confidence 388999999999964 57899999999999866 455889999999886 4677777777888887 555599
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 023425 145 AFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAK 220 (282)
Q Consensus 145 A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 220 (282)
|+++|+.+++. .+++|.--+|.-|+. .++++-|+.||++.++.| +++-+.|+|.|.+. -+.++.+...
T Consensus 309 a~~lYk~vlk~~~~nvEaiAcia~~yfY----~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y----aqQ~D~~L~s 380 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPINVEAIACIAVGYFY----DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY----AQQIDLVLPS 380 (478)
T ss_pred HHHHHHHHHhcCCccceeeeeeeecccc----CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh----hcchhhhHHH
Confidence 99999999987 578888888888887 688999999999999987 68889999999988 5677778888
Q ss_pred HHHHHH---------HHchhchhc--cCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 221 RVSAAK---------KARANLESN--LMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 221 ~~~a~~---------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
|.+|.. ..|||||.+ .-+|+..|...|+.|.... +..|..+|+.+.-..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 888865 579999954 6789999999999998766 666778888877654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-10 Score=96.97 Aligned_cols=221 Identities=14% Similarity=0.037 Sum_probs=161.7
Q ss_pred hhhhhcchhhhhhc-ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 023425 16 LGLLQSNQHQKRWL-HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSK 94 (282)
Q Consensus 16 ~~~~~~~~~~~~~~-~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~ 94 (282)
+.--+.+|-.++.+ .+-+.+|...++..++...-.+ .+......+...+.++.|+..|...++.-|++..-....+.
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~d--TfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPD--TFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQAR 298 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchh--HHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHH
Confidence 34444555445544 5567777777777766443322 22222334455567888999999998888888777777777
Q ss_pred HHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhc
Q 023425 95 LHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLT 170 (282)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~ 170 (282)
++..- .+.++|.++|+.+++. .+.+|...+|.-|+.++.. +-|+.||++...+| +|+-..|||.|.+.
T Consensus 299 i~eam----~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P----E~AlryYRRiLqmG~~speLf~NigLCC~y 370 (478)
T KOG1129|consen 299 IHEAM----EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP----EMALRYYRRILQMGAQSPELFCNIGLCCLY 370 (478)
T ss_pred HHHHH----HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh----HHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence 77754 4568899999998864 5778888888777775444 88999999998885 78888899988888
Q ss_pred CCCCccCHHHHHHHHHHHHHc---C--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc--cC
Q 023425 171 GDCVKKDIASALWCFHRASEK---G--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN--LM 237 (282)
Q Consensus 171 g~g~~~d~~~A~~~~~~A~~~---g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~--~~ 237 (282)
.+.++.++..|++|... . -++.+||||.+... .+|...|...|+.+.. .+..||+.. ..
T Consensus 371 ----aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~----iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 371 ----AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT----IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred ----hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe----ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 67788889999988653 1 25678899888776 7888888888888875 577788854 77
Q ss_pred CCHHHHHHHHHHHHHhc
Q 023425 238 NPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 238 ~~~~~A~~~~~~Aa~~g 254 (282)
+++++|+.++.-|...-
T Consensus 443 G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 443 GDILGARSLLNAAKSVM 459 (478)
T ss_pred CchHHHHHHHHHhhhhC
Confidence 88999998888776544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-09 Score=96.51 Aligned_cols=221 Identities=15% Similarity=0.037 Sum_probs=160.4
Q ss_pred hhhhhcccchHHHHHHHHHHhhhhhHH--HHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC
Q 023425 24 HQKRWLHSRNKKAMELIAKGWSALKEV--DRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV 101 (282)
Q Consensus 24 ~~~~~~~~~~~~A~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~ 101 (282)
...-...++++.|+|.+.---+..+.. ....-++.......-+++..|-.|-..|+..+.-++.|+.+-|.+-+-.
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~n-- 503 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFAN-- 503 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeec--
Confidence 334445778888888764322211111 1111112222222236799999999999999999999999998875533
Q ss_pred CCcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHhcCCCCccC
Q 023425 102 PGACKAMGAALLVDAANMG--DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAV--DQLHPGALYLLGTVYLTGDCVKKD 177 (282)
Q Consensus 102 ~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa--~~g~~~A~~~Lg~~y~~g~g~~~d 177 (282)
.|+++|.++|+.|...+ ..+|.|++|..+...++. ++|+.+|.+.- -.++++.++.++.+|.. ..|
T Consensus 504 --gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~l----deald~f~klh~il~nn~evl~qianiye~----led 573 (840)
T KOG2003|consen 504 --GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNL----DEALDCFLKLHAILLNNAEVLVQIANIYEL----LED 573 (840)
T ss_pred --CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhC
Confidence 58899999999999764 679999999999985555 99999999864 45999999999999999 999
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------Hchhch--hccCCCHHHHHHHH
Q 023425 178 IASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARANLE--SNLMNPVEKAKEQF 247 (282)
Q Consensus 178 ~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~lg--~~~~~~~~~A~~~~ 247 (282)
..+|++|+-++.. ..+|...-.||.+|-+ .+|-..|+.++-..-.- .--.|| ++...-.++|+.||
T Consensus 574 ~aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999866 4789999999999988 67777777665444321 111233 33555678899999
Q ss_pred HHHHHhccHHHHH
Q 023425 248 EVAAQAGCNLGLR 260 (282)
Q Consensus 248 ~~Aa~~g~~~a~~ 260 (282)
++|+-.....+..
T Consensus 650 ekaaliqp~~~kw 662 (840)
T KOG2003|consen 650 EKAALIQPNQSKW 662 (840)
T ss_pred HHHHhcCccHHHH
Confidence 9998776554443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-09 Score=84.53 Aligned_cols=119 Identities=13% Similarity=0.012 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHH
Q 023425 72 KENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYI 149 (282)
Q Consensus 72 ~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~ 149 (282)
..+|+++++.+|+ .++.+|..+... +++++|+..|++++. +.++++++++|.++...+. +++|+.+|
T Consensus 13 ~~~~~~al~~~p~---~~~~~g~~~~~~----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~----~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPE---TVYASGYASWQE----GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE----YTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHH---HHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh----HHHHHHHH
Confidence 3578888887544 466778887755 567888888888874 5688888889988888444 48899999
Q ss_pred HHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 023425 150 EKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLL 205 (282)
Q Consensus 150 ~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~ 205 (282)
.+++.. +++.+++++|.++.. .+++++|+..|++|+.. +++..+.+.|....
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKM----MGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 998886 788889999998888 88899999999988774 56777777776543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.6e-09 Score=88.47 Aligned_cols=147 Identities=16% Similarity=0.033 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHH---HHHHHHHHHhcCCC
Q 023425 66 PLLKTAKENFELALEADNSNT---HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPD---AQYELGCRLRVEND 137 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~---~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~---A~~~Lg~~y~~g~~ 137 (282)
+++++|+..|++++...|+++ .+++.+|.++... +++++|+..|+++++ ++++. +++.+|.++.....
T Consensus 47 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~ 122 (235)
T TIGR03302 47 GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS----GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID 122 (235)
T ss_pred CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc
Confidence 449999999999999988887 6889999999976 678999999999985 34444 79999999876311
Q ss_pred ----CcCCHHHHHHHHHHHHHc--CCHHH-----------------HHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--
Q 023425 138 ----YVQSDQQAFYYIEKAVDQ--LHPGA-----------------LYLLGTVYLTGDCVKKDIASALWCFHRASEKG-- 192 (282)
Q Consensus 138 ----~~~d~~~A~~~~~kAa~~--g~~~A-----------------~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-- 192 (282)
...+.++|+..|+++++. +++.+ ...+|.+|.. .+++.+|+.+|+++++..
T Consensus 123 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~ 198 (235)
T TIGR03302 123 RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK----RGAYVAAINRFETVVENYPD 198 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCCC
Confidence 124578999999999876 33322 2367778887 899999999999998752
Q ss_pred ---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 193 ---HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 193 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
.+.+++.+|..|.. .+++++|..+++..
T Consensus 199 ~~~~~~a~~~l~~~~~~----lg~~~~A~~~~~~l 229 (235)
T TIGR03302 199 TPATEEALARLVEAYLK----LGLKDLAQDAAAVL 229 (235)
T ss_pred CcchHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence 36789999999988 77777777666544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-08 Score=99.56 Aligned_cols=131 Identities=5% Similarity=-0.090 Sum_probs=98.2
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.++.++|++.+.+... ..+.........+......+++++|+..|+++++.+|+++.+...++.++... .+.++|
T Consensus 28 ~g~~~~A~~~~~~~~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~----g~~~eA 102 (765)
T PRK10049 28 AGQDAEVITVYNRYRV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA----GQYDEA 102 (765)
T ss_pred cCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 6678888887777654 22222222233333334456689999999999999999999999999888765 566899
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
+..++++++ ++++. ++.+|.++.. ..+.++|+..|+++++. +++.++..++.++..
T Consensus 103 ~~~l~~~l~~~P~~~~-~~~la~~l~~----~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 103 LVKAKQLVSGAPDKAN-LLALAYVYKR----AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999874 56788 8889998887 44459999999999887 788888888888876
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-08 Score=86.48 Aligned_cols=214 Identities=10% Similarity=-0.084 Sum_probs=162.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
..++.+|++++...+... +..++|+..+.++++.+|.+..+++..|.++... ..+++++
T Consensus 33 ~~~~~~a~~~~ra~l~~~------------------e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L---~~~l~ee 91 (320)
T PLN02789 33 TPEFREAMDYFRAVYASD------------------ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEAL---DADLEEE 91 (320)
T ss_pred CHHHHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHc---chhHHHH
Confidence 556888888777654311 2368999999999999999999999999998854 2357899
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+.++.++++ +.+..+++..+.++..-+. ...++++.++.++++. .+..|+...|.++.. .++++++++++
T Consensus 92 L~~~~~~i~~npknyqaW~~R~~~l~~l~~--~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL~~~ 165 (320)
T PLN02789 92 LDFAEDVAEDNPKNYQIWHHRRWLAEKLGP--DAANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHCCcchHHhHHHHHHHHHcCc--hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHHHHH
Confidence 999999984 5688899988877765321 1236789999999887 688999999999988 78899999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcC---CCCcccHHHHHHHHHHHHH------HHchhchhccC------CCHHHHHHHHH
Q 023425 186 HRASEK--GHAGAAIAYGSLLLRG---VQVPECLTKLNAKRVSAAK------KARANLESNLM------NPVEKAKEQFE 248 (282)
Q Consensus 186 ~~A~~~--g~~~a~~~Lg~~y~~g---~g~~~~~~~A~~~~~~a~~------~a~~~lg~~~~------~~~~~A~~~~~ 248 (282)
.++++. .+..|++..+.++... .+.....+..+.+..+++. .+|..++.+.. ....+|...+.
T Consensus 166 ~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 166 HQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred HHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 999885 5788999999887753 2233345677888888887 47777664321 23456888888
Q ss_pred HHHHhc--cHHHHHHHHHHHHHHh
Q 023425 249 VAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 249 ~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
.+.+.+ ++.|...|+.+..+..
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEGL 269 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhhh
Confidence 887755 6778888888887654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6e-09 Score=93.79 Aligned_cols=182 Identities=19% Similarity=0.097 Sum_probs=148.7
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAA 111 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~ 111 (282)
+.++-...|.++.+ +.+....++|+.+....+..++++|+.-|++|+.++|.+.-++..|+.+.+..+ ..+++..
T Consensus 375 ~~~~~~~~F~~A~~-ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~----k~~~~m~ 449 (606)
T KOG0547|consen 375 QSEKMWKDFNKAED-LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH----KIAESMK 449 (606)
T ss_pred ccHHHHHHHHHHHh-cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH----HHHHHHH
Confidence 34556666766665 555556788888888888899999999999999999999999999999988663 5699999
Q ss_pred HHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHhcCCCCccCHHHH
Q 023425 112 LLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH--------PGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 112 ~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~--------~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
.|+.+.+ +..++.+.-.|.++.+ .++.++|++.|.+|+++.. +--+++-|.+... -.+|+.+|
T Consensus 450 ~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a 522 (606)
T KOG0547|consen 450 TFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---WKEDINQA 522 (606)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc---hhhhHHHH
Confidence 9999997 5788999999999998 4555999999999999843 2333444444433 36999999
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHc
Q 023425 182 LWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKAR 229 (282)
Q Consensus 182 ~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~ 229 (282)
+.++++|++.+ ...|+-.||.+-.+ .+++++|+++|++++..+.
T Consensus 523 ~~Ll~KA~e~Dpkce~A~~tlaq~~lQ----~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 523 ENLLRKAIELDPKCEQAYETLAQFELQ----RGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHH
Confidence 99999998876 47799999999998 8999999999999987544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-08 Score=93.72 Aligned_cols=215 Identities=18% Similarity=0.055 Sum_probs=155.1
Q ss_pred chhhhhhcccchHHHHHHHHHHhhhhh-------HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH--------cCCCCH
Q 023425 22 NQHQKRWLHSRNKKAMELIAKGWSALK-------EVDRVIDYCELNDRRLIPLLKTAKENFELALE--------ADNSNT 86 (282)
Q Consensus 22 ~~~~~~~~~~~~~~A~e~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--------~~~g~~ 86 (282)
+........+++++|+.++..++..+. ..........+..+...+.+.+|+..|++|+. .+|-.+
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 355566668999999999999988742 12222222344455556779999999999986 344455
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-----C--CC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-
Q 023425 87 HARYWLSKLHLKYHVPGACKAMGAALLVDAAN-----M--GD---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ- 155 (282)
Q Consensus 87 ~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-----~--g~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~- 155 (282)
..+.+|+.+|... .++++|..++++|.+ . .+ +..+.+++.++...+.+ ++|..+|+++.+.
T Consensus 284 ~~l~nLa~ly~~~----GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~----Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQ----GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY----EEAKKLLQKALKIY 355 (508)
T ss_pred HHHHHHHHHHhcc----CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch----hHHHHHHHHHHHHH
Confidence 6888999999866 566999999999864 1 22 34677788888875555 8999999988764
Q ss_pred ------CC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCcccHHH
Q 023425 156 ------LH---PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----------GHAGAAIAYGSLLLRGVQVPECLTK 216 (282)
Q Consensus 156 ------g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~~~~~ 216 (282)
.+ +.-..+||.+|+. .+++++|.++|++|+.. +......+||..|.+ .+.+..
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~----~k~~~~ 427 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE----LKKYEE 427 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH----hcccch
Confidence 22 4456789999999 99999999999999874 235578899999988 455555
Q ss_pred HHHHHHHHHH-------------HHchhch--hccCCCHHHHHHHHHHHHH
Q 023425 217 LNAKRVSAAK-------------KARANLE--SNLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 217 A~~~~~~a~~-------------~a~~~lg--~~~~~~~~~A~~~~~~Aa~ 252 (282)
|...|..+.. ..+.||+ +-..++++.|+++-.++..
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5555555544 2344666 3478899999999888773
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-09 Score=83.94 Aligned_cols=120 Identities=13% Similarity=0.031 Sum_probs=95.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Q 023425 38 ELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA 117 (282)
Q Consensus 38 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa 117 (282)
+++.++++..+.. .+..+......+++++|+.+|++++..+|.++.+++.+|.++... .++++|+.+|.+|+
T Consensus 14 ~~~~~al~~~p~~----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~----g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLSVDPET----VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML----KEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHcCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH----hhHHHHHHHHHHHH
Confidence 3455555533332 222333344457799999999999999999999999999999866 57799999999998
Q ss_pred h--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 023425 118 N--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYL 169 (282)
Q Consensus 118 ~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~ 169 (282)
+ ++++++++++|.++...+.. ++|+..|.+|++. +++..+.++|.+..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~----~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEP----GLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 5 68999999999999995555 9999999999987 78888888887643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=94.24 Aligned_cols=204 Identities=14% Similarity=-0.066 Sum_probs=81.6
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.|.+.+...... ....... ......+++++|+..++++.+. ++++..+..+..++... .+++++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~~-~~~~~~l-~~l~~~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~----~~~~~~ 129 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKAN-PQDYERL-IQLLQDGDPEEALKLAEKAYER-DGDPRYLLSALQLYYRL----GDYDEA 129 (280)
T ss_dssp ----------------------------------------------------------------H-HHHT----T-HHHH
T ss_pred ccccccccccccccccccccc-ccccccc-cccccccccccccccccccccc-ccccchhhHHHHHHHHH----hHHHHH
Confidence 566778888777766533221 1111111 1224557788888888877753 35666666666666654 466777
Q ss_pred HHHHHHHHh----CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 110 AALLVDAAN----MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 110 ~~~~~~Aa~----~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
...++++.. ..++..+..+|.++...+.. ++|+.+|++|++. +++.+...++.++.. .++.+++..
T Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~----~~A~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~~ 201 (280)
T PF13429_consen 130 EELLEKLEELPAAPDSARFWLALAEIYEQLGDP----DKALRDYRKALELDPDDPDARNALAWLLID----MGDYDEARE 201 (280)
T ss_dssp HHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH----HHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHHH
Confidence 777777543 24667777788888774444 8888888888876 567777778877776 677777555
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------Hchhch--hccCCCHHHHHHHHHHHHH
Q 023425 184 CFHRASE--KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARANLE--SNLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 184 ~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~lg--~~~~~~~~~A~~~~~~Aa~ 252 (282)
.+..... ..++..+..+|.+|.. .+++++|..||+++... ....++ ....|+.++|...++++.+
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~----lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQ----LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHH----HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhcc----cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5555433 3455666777888877 77788888888887762 333444 3366777788887777654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-08 Score=81.41 Aligned_cols=160 Identities=16% Similarity=0.002 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGAL 161 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~ 161 (282)
..+...||.-|... .|...|..-+++|+ ++.+..++..++.+|..-+.. +.|.+.|++|+.. ++.+-.
T Consensus 35 a~arlqLal~YL~~----gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~----~~A~e~YrkAlsl~p~~GdVL 106 (250)
T COG3063 35 AKARLQLALGYLQQ----GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN----DLADESYRKALSLAPNNGDVL 106 (250)
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh----hhHHHHHHHHHhcCCCccchh
Confidence 45777888888876 57799999999998 467999999999999996655 9999999999987 788999
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------Hchh
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEKG----HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARAN 231 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~ 231 (282)
.|-|..+-. .+.+++|..+|++|+..- .+.++-|+|.|-++ .+..+.|.++|+++.+. ....
T Consensus 107 NNYG~FLC~----qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 107 NNYGAFLCA----QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred hhhhHHHHh----CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 999988877 789999999999999863 47789999999998 88899999999999983 2223
Q ss_pred ch--hccCCCHHHHHHHHHHHHHhccHHHHHH
Q 023425 232 LE--SNLMNPVEKAKEQFEVAAQAGCNLGLRW 261 (282)
Q Consensus 232 lg--~~~~~~~~~A~~~~~~Aa~~g~~~a~~~ 261 (282)
+. ....+++..|..++++-...|...|...
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL 210 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGGAQAESL 210 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhcccccHHHH
Confidence 33 3467788888888887777665555444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=92.32 Aligned_cols=205 Identities=16% Similarity=0.075 Sum_probs=165.3
Q ss_pred hhhhhHHhhhhhhhcchhh-hhh--------cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 023425 7 KASTLKSAALGLLQSNQHQ-KRW--------LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFEL 77 (282)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~-~~~--------~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 77 (282)
..+.|+..+..++..-++. -+| ..+++++|.-+|.|+-. +.+..+..-.-+|..+..++..++|+..|..
T Consensus 293 ~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~-lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 293 KSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT-LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred ccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh-cCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 4556666666666653322 122 26889999999999765 4333344444556677778889999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 78 ALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 78 a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
|...=||.......+|.-|... .+.+-|.++|.+|. -+.+|--...+|.+.+. .+.+.+|..||+++...
T Consensus 372 Aarl~~G~hlP~LYlgmey~~t----~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 372 AARLMPGCHLPSLYLGMEYMRT----NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEV 443 (611)
T ss_pred HHHhccCCcchHHHHHHHHHHh----ccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHH
Confidence 9999999999999999999865 56799999999996 57899999999999887 55669999999999842
Q ss_pred ----C-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 156 ----L-----HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 156 ----g-----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
+ ..+-+.+||.+|.. .+.+++|+.+|++|+.. .++..+..+|.+|.. .+++++|+.+|.+|
T Consensus 444 ik~~~~e~~~w~p~~~NLGH~~Rk----l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l----lgnld~Aid~fhKa 515 (611)
T KOG1173|consen 444 IKSVLNEKIFWEPTLNNLGHAYRK----LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL----LGNLDKAIDHFHKA 515 (611)
T ss_pred hhhccccccchhHHHHhHHHHHHH----HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH----hcChHHHHHHHHHH
Confidence 1 34568999999999 89999999999999875 678899999999998 99999999999999
Q ss_pred HHHH
Q 023425 225 AKKA 228 (282)
Q Consensus 225 ~~~a 228 (282)
....
T Consensus 516 L~l~ 519 (611)
T KOG1173|consen 516 LALK 519 (611)
T ss_pred HhcC
Confidence 7643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-08 Score=90.81 Aligned_cols=151 Identities=19% Similarity=0.100 Sum_probs=124.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCC-------------------------CcC------------HH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVP-------------------------GAC------------KA 107 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~-------------------------~~~------------~~ 107 (282)
..+-..|+..+++|++++|++-+|+-.|+..|.+.+.- +.+ ..
T Consensus 332 NE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~ 411 (579)
T KOG1125|consen 332 NENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLA 411 (579)
T ss_pred ccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHH
Confidence 35567799999999999999999999999987654210 000 23
Q ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHH
Q 023425 108 MGAALLVDAAN-M---GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 108 ~A~~~~~~Aa~-~---g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
.-.++|..|+. . -+++-+..||.+|.- .+++++|+.+|+.|+.. .+..-+.+||..+-+ -.+.++|
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN----~~~s~EA 483 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNL----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN----GNRSEEA 483 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhc----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC----CcccHHH
Confidence 34456666663 2 378999999999988 44559999999999987 788899999999999 5679999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Q 023425 182 LWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK 227 (282)
Q Consensus 182 ~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 227 (282)
+.-|++|++. |++.+.||||+.++. .+.+++|.++|-.|+..
T Consensus 484 IsAY~rALqLqP~yVR~RyNlgIS~mN----lG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 484 ISAYNRALQLQPGYVRVRYNLGISCMN----LGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCCeeeeehhhhhhhhh----hhhHHHHHHHHHHHHHh
Confidence 9999999875 789999999999999 89999999999999873
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=78.12 Aligned_cols=109 Identities=15% Similarity=0.022 Sum_probs=94.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 023425 73 ENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIE 150 (282)
Q Consensus 73 ~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~ 150 (282)
..|+++++.+|+++.+.+.+|..+... .++++|..+|+++++ +.++++++++|.++.. .+++++|+.+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ----GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 468889999999999999999999865 577999999999875 5688999999999988 445599999999
Q ss_pred HHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 151 KAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 151 kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
++.+. .++..++.+|.+|.. .+++++|+.+|+++++...
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLA----LGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcc
Confidence 99877 578999999999998 8999999999999988653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.7e-09 Score=91.49 Aligned_cols=213 Identities=13% Similarity=0.049 Sum_probs=124.3
Q ss_pred hhhhcccchHHHHHHHHHHhhhhhH---HHHHHHHHhhcCCCchhhHHHHHHHH------HHHHHcCCCCHHHHHHHHHH
Q 023425 25 QKRWLHSRNKKAMELIAKGWSALKE---VDRVIDYCELNDRRLIPLLKTAKENF------ELALEADNSNTHARYWLSKL 95 (282)
Q Consensus 25 ~~~~~~~~~~~A~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~------~~a~~~~~g~~~a~~~Lg~~ 95 (282)
+.-...++....+.+|..++....+ .-..++-..|+.+-..+|+++|+++- .+.+--.-|-+.+.-+||..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3344567778888888887764442 22344556677777778888888873 33333445667777788887
Q ss_pred HhcCCCCCcCHHHHHHHHHHH----HhCC----CHHHHHHHHHHHhcCCCC-----c-----------CCHHHHHHHHHH
Q 023425 96 HLKYHVPGACKAMGAALLVDA----ANMG----DPDAQYELGCRLRVENDY-----V-----------QSDQQAFYYIEK 151 (282)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~A----a~~g----~~~A~~~Lg~~y~~g~~~-----~-----------~d~~~A~~~~~k 151 (282)
+--. ..+++|+.+..+- -+.| ...|+||||.+|...+.. + .+.+.|.++|..
T Consensus 105 lKv~----G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 105 LKVK----GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred hhhh----cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 7633 4557776655543 3444 467888888888753321 1 123456666655
Q ss_pred HHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHH----HHHcCC----HHHHHHHHHHHHcCCCCcccHH
Q 023425 152 AVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHR----ASEKGH----AGAAIAYGSLLLRGVQVPECLT 215 (282)
Q Consensus 152 Aa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~----A~~~g~----~~a~~~Lg~~y~~g~g~~~~~~ 215 (282)
-.+. |+ ..|+-+||..|+- .+|+++|+++-+. |-+-|+ -.|.-|||.+|.- ..+++
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif----lg~fe 252 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF----LGNFE 252 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----hcccH
Confidence 4432 32 3445566666665 6667666665433 223344 2355666666665 56666
Q ss_pred HHHHHHHHHHH------------HHchhchh--ccCCCHHHHHHHHHH
Q 023425 216 KLNAKRVSAAK------------KARANLES--NLMNPVEKAKEQFEV 249 (282)
Q Consensus 216 ~A~~~~~~a~~------------~a~~~lg~--~~~~~~~~A~~~~~~ 249 (282)
.|+++|+++.. +.+|.||. ....++++|+.|+.+
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 66666665543 34555552 244456666666554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-07 Score=83.65 Aligned_cols=223 Identities=9% Similarity=-0.026 Sum_probs=124.3
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARY-WLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~-~Lg~~~~~~~~~~~~~~~ 108 (282)
.|++++|...+.++.... +.....+......-...++++.|..+|+++.+.+|++..+.. ..+.++... ++++.
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~----g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR----NENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC----CCHHH
Confidence 466666665555543321 111222222222223345566666666666655555433322 224555433 35566
Q ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHH--------------------------------------
Q 023425 109 GAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYY-------------------------------------- 148 (282)
Q Consensus 109 A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~-------------------------------------- 148 (282)
|...+++.. .++++.+...++.+|.. ..|+++|+..
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 666666654 24556666666655554 2222333311
Q ss_pred ----HHHHHH--cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 023425 149 ----IEKAVD--QLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-HAGAAIAYGSLLLRGVQVPECLTKLNAKR 221 (282)
Q Consensus 149 ----~~kAa~--~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 221 (282)
++...+ ..++.+...++..+.. .++.++|...++++.+.. ++......+.+. .++.+++....
T Consensus 248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~------~~~~~~al~~~ 317 (398)
T PRK10747 248 LKRWWKNQSRKTRHQVALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPRLK------TNNPEQLEKVL 317 (398)
T ss_pred HHHHHHhCCHHHhCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhcc------CCChHHHHHHH
Confidence 111111 1578888888888888 888999999998888754 343333333331 25556666555
Q ss_pred HHHHH------HHchhch--hccCCCHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHhh
Q 023425 222 VSAAK------KARANLE--SNLMNPVEKAKEQFEVAAQAGCNLG-LRWLQRIEEEEKR 271 (282)
Q Consensus 222 ~~a~~------~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g~~~a-~~~l~~l~~~~~~ 271 (282)
++..+ ..+..+| ....+++.+|..+|+++.+..+... +..|+.+.+...+
T Consensus 318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 55544 2455566 3477788899999999988875444 4788888776543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=89.69 Aligned_cols=220 Identities=14% Similarity=0.035 Sum_probs=148.1
Q ss_pred chhhhhhcccchHHHHHHHHHHhhh---hh--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH----c--CCCCHHHHH
Q 023425 22 NQHQKRWLHSRNKKAMELIAKGWSA---LK--EVDRVIDYCELNDRRLIPLLKTAKENFELALE----A--DNSNTHARY 90 (282)
Q Consensus 22 ~~~~~~~~~~~~~~A~e~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~--~~g~~~a~~ 90 (282)
..+..-...++|++|+++-.--+.. +. ....-..-+.|+...++++|++|+.+-.+-+. + .-+-+.|+|
T Consensus 60 QLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlY 139 (639)
T KOG1130|consen 60 QLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALY 139 (639)
T ss_pred HhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHh
Confidence 3344444567899998863332221 11 11112233566778888999999887666553 1 123567999
Q ss_pred HHHHHHhcCCC-----CC-----------cCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhcCCCCcCCHHHHH
Q 023425 91 WLSKLHLKYHV-----PG-----------ACKAMGAALLVDAAN----MGD----PDAQYELGCRLRVENDYVQSDQQAF 146 (282)
Q Consensus 91 ~Lg~~~~~~~~-----~~-----------~~~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~ 146 (282)
+||.+|...+. .+ .+.+.|+++|..-.+ .|+ ..|+-+||+.|+-- .|++.|+
T Consensus 140 NlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL----Gdf~~ai 215 (639)
T KOG1130|consen 140 NLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL----GDFDQAI 215 (639)
T ss_pred hhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee----ccHHHHH
Confidence 99999984421 11 113566677666543 343 35677888887764 4448888
Q ss_pred HHHHHHHH----cCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHH----HHcCC----HHHHHHHHHHHHcCCCC
Q 023425 147 YYIEKAVD----QLH----PGALYLLGTVYLTGDCVKKDIASALWCFHRA----SEKGH----AGAAIAYGSLLLRGVQV 210 (282)
Q Consensus 147 ~~~~kAa~----~g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A----~~~g~----~~a~~~Lg~~y~~g~g~ 210 (282)
.+-+.=.+ .|+ -.|..+||.+|.- .++++.|+++|+++ ++.|+ +..||.||..|.-
T Consensus 216 ~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif----lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl---- 287 (639)
T KOG1130|consen 216 HFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF----LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL---- 287 (639)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH----
Confidence 87655433 244 4677899999988 99999999999986 45565 5679999999987
Q ss_pred cccHHHHHHHHHHHHH------------HHchhchhc--cCCCHHHHHHHHHHHHHh
Q 023425 211 PECLTKLNAKRVSAAK------------KARANLESN--LMNPVEKAKEQFEVAAQA 253 (282)
Q Consensus 211 ~~~~~~A~~~~~~a~~------------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~ 253 (282)
-+++++|+.|+.+-.. .+++.||.. ..++..+|+++.++..+.
T Consensus 288 l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 288 LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7889999999988755 467778843 566778888887776654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-07 Score=80.27 Aligned_cols=160 Identities=14% Similarity=0.067 Sum_probs=119.1
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCH---HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 81 ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDP---DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 81 ~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~---~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.++..+..++.+|..+... ++++.|+..|+++++. +++ .+++.+|.+|.. ..++++|+..|+++.+.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDS----GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRL 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Confidence 4567888999999998865 5779999999999853 444 688999999998 45569999999999986
Q ss_pred --CCH---HHHHHHHHHHhcCC----CCccCHHHHHHHHHHHHHcC--CHHH-----------------HHHHHHHHHcC
Q 023425 156 --LHP---GALYLLGTVYLTGD----CVKKDIASALWCFHRASEKG--HAGA-----------------AIAYGSLLLRG 207 (282)
Q Consensus 156 --g~~---~A~~~Lg~~y~~g~----g~~~d~~~A~~~~~~A~~~g--~~~a-----------------~~~Lg~~y~~g 207 (282)
+++ .+++.+|.++..-. ...+++++|++.|++++... ++.+ .+.+|.+|..
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~- 178 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK- 178 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 334 47999999998621 12378999999999998753 2222 2356677766
Q ss_pred CCCcccHHHHHHHHHHHHH---------HHchhchh--ccCCCHHHHHHHHHHHHH
Q 023425 208 VQVPECLTKLNAKRVSAAK---------KARANLES--NLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 208 ~g~~~~~~~A~~~~~~a~~---------~a~~~lg~--~~~~~~~~A~~~~~~Aa~ 252 (282)
.+++.+|+.+|+++.. .+++.+|. ...+++++|..+++....
T Consensus 179 ---~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 179 ---RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred ---cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778888888888765 35566663 367777888877766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.9e-07 Score=87.21 Aligned_cols=140 Identities=11% Similarity=0.030 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
+..++..+-+.= |.+++++.+||.+....+ .+++|..+++.++ .+++..|..+++.++...+++ ++
T Consensus 71 ~~~~~~~~~~~~----~~~~~~~~~La~i~~~~g----~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~----ee 138 (694)
T PRK15179 71 ALPELLDYVRRY----PHTELFQVLVARALEAAH----RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI----EA 138 (694)
T ss_pred hHHHHHHHHHhc----cccHHHHHHHHHHHHHcC----CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH----HH
Confidence 355555555443 567999999999998774 4599999999998 478999999999999995555 99
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 023425 145 AFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAK 220 (282)
Q Consensus 145 A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 220 (282)
|+.+++++... .++.+++.+|.++.. .+++++|+.+|++++.+ +++.++.++|.+++. .++.+.|...
T Consensus 139 A~~~~~~~l~~~p~~~~~~~~~a~~l~~----~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~ 210 (694)
T PRK15179 139 GRAEIELYFSGGSSSAREILLEAKSWDE----IGQSEQADACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDV 210 (694)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHH----hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 99999999887 799999999999999 99999999999999965 468999999999998 7888888888
Q ss_pred HHHHHH
Q 023425 221 RVSAAK 226 (282)
Q Consensus 221 ~~~a~~ 226 (282)
|++|++
T Consensus 211 ~~~a~~ 216 (694)
T PRK15179 211 LQAGLD 216 (694)
T ss_pred HHHHHH
Confidence 888876
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-06 Score=75.69 Aligned_cols=188 Identities=17% Similarity=0.047 Sum_probs=130.4
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-CCC-----HHHHHHHHHHHhcCCC
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN-MGD-----PDAQYELGCRLRVEND 137 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-~g~-----~~A~~~Lg~~y~~g~~ 137 (282)
...+.++|++.|...++.+|...+++..||.++...+.+ +.|+..-.--.+ ++. .-|.+.||.-|...+-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEv----DRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEV----DRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchH----HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 335578999999999988888899999999999876444 888876555543 232 3467777777776555
Q ss_pred CcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHcCC
Q 023425 138 YVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAG-------AAIAYGSLLLRGV 208 (282)
Q Consensus 138 ~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~-------a~~~Lg~~y~~g~ 208 (282)
+ +.|...|..-.+.+ -..|.-.|-.+|.. .+++++|+..-++-+..+... -+..|+.-+..
T Consensus 123 ~----DRAE~~f~~L~de~efa~~AlqqLl~IYQ~----treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-- 192 (389)
T COG2956 123 L----DRAEDIFNQLVDEGEFAEGALQQLLNIYQA----TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-- 192 (389)
T ss_pred h----hHHHHHHHHHhcchhhhHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh--
Confidence 5 78888888877754 36677778888877 788888888877766655422 23444554444
Q ss_pred CCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 023425 209 QVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEE 267 (282)
Q Consensus 209 g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~ 267 (282)
..+.++|..++++|.+ .+..-+|. ..++++.+|++-++...++....--..+..+.+
T Consensus 193 --~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 193 --SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred --hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 6777778888888876 34455663 367788888888888887776655544444444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-07 Score=86.89 Aligned_cols=159 Identities=14% Similarity=0.046 Sum_probs=124.8
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-----CC
Q 023425 54 IDYCELNDRRLIPLLKTAKENFELALEA--------DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN-----MG 120 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-----~g 120 (282)
+....+..+-..+++++|+.+++.|++. .|.-.....++|.+|... ..+.+|+..|++|.. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~----~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL----GKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHhcC
Confidence 3333555666678899999999999986 444445556699999976 566999999999974 12
Q ss_pred --C---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 121 --D---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-------LH---PGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 121 --~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-------g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+ +..+.+||.+|...+.+ .+|..++++|.+. .+ +..+.+++.++.. .+++++|+.++
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf----~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~ 348 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKF----AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLL 348 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHH
Confidence 3 46899999999987777 8888888888773 12 4556778888888 89999999999
Q ss_pred HHHHHc-------CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH
Q 023425 186 HRASEK-------GH---AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA 228 (282)
Q Consensus 186 ~~A~~~-------g~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a 228 (282)
+++.+. .+ +.-..+||.+|.. .+.+++|.+.|++|+...
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHH
Confidence 999663 22 4458899999999 899999999999999843
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-06 Score=79.24 Aligned_cols=207 Identities=10% Similarity=0.022 Sum_probs=151.2
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|.+++.++.+..++................+++++|...+++..+.+|+++.+...++.+|... +++++
T Consensus 130 ~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~----gdw~~ 205 (398)
T PRK10747 130 QRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT----GAWSS 205 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HhHHH
Confidence 37889999999999876444432222222233344468899999999999999999999999999999866 68899
Q ss_pred HHHHHHHHHhCC--------------------------------------------CHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 109 GAALLVDAANMG--------------------------------------------DPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 109 A~~~~~~Aa~~g--------------------------------------------~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
|+..+.+..+.+ ++++...++..+.. ..+.++
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~----~g~~~~ 281 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE----CDDHDT 281 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH----CCCHHH
Confidence 998888886432 22233334444444 244588
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 023425 145 AFYYIEKAVDQL-HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKR 221 (282)
Q Consensus 145 A~~~~~kAa~~g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 221 (282)
|...++++.+.. ++......+.+ . .++++++++..++..++ +++...+.+|.++.. .+++++|..+|
T Consensus 282 A~~~L~~~l~~~~~~~l~~l~~~l--~----~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~----~~~~~~A~~~l 351 (398)
T PRK10747 282 AQQIILDGLKRQYDERLVLLIPRL--K----TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK----HGEWQEASLAF 351 (398)
T ss_pred HHHHHHHHHhcCCCHHHHHHHhhc--c----CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHH
Confidence 888888888753 44333333332 2 47899999999888775 678889999999999 89999999999
Q ss_pred HHHHHH-----Hchhchh--ccCCCHHHHHHHHHHHHHh
Q 023425 222 VSAAKK-----ARANLES--NLMNPVEKAKEQFEVAAQA 253 (282)
Q Consensus 222 ~~a~~~-----a~~~lg~--~~~~~~~~A~~~~~~Aa~~ 253 (282)
+++.+. .+..++. ...++.++|..+|+++..+
T Consensus 352 e~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 352 RAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999873 4445663 3778899999999988764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.4e-07 Score=81.32 Aligned_cols=86 Identities=7% Similarity=0.013 Sum_probs=49.2
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|.+++.++....+.................+++++|...+++..+..|+++.+...++.++... +|++.|
T Consensus 131 ~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~----~d~~~a 206 (409)
T TIGR00540 131 RGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS----GAWQAL 206 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hhHHHH
Confidence 3566777777766544322211111111111122235577888888888887788888888888777755 455666
Q ss_pred HHHHHHHHhC
Q 023425 110 AALLVDAANM 119 (282)
Q Consensus 110 ~~~~~~Aa~~ 119 (282)
...+.+..+.
T Consensus 207 ~~~l~~l~k~ 216 (409)
T TIGR00540 207 DDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHc
Confidence 6655555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=82.99 Aligned_cols=189 Identities=14% Similarity=0.029 Sum_probs=125.2
Q ss_pred hhhhhHHhhhhhhhcchhhhhhc---ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcC-
Q 023425 7 KASTLKSAALGLLQSNQHQKRWL---HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEAD- 82 (282)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 82 (282)
.|..|+..+--.+.+..+..... ..++++|.+.|.++...... .+++++|...|.+|++..
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~---------------~~~~~~A~~ay~kAa~~~~ 66 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKL---------------AKDWEKAAEAYEKAADCYE 66 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHH---------------TT-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHH---------------HhccchhHHHHHHHHHHHH
Confidence 45666666655555443322222 23799999999987652221 244788888888887621
Q ss_pred -CCC----HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----CCCH----HHHHHHHHHHhcCCCCcCCHHHHHHHH
Q 023425 83 -NSN----THARYWLSKLHLKYHVPGACKAMGAALLVDAAN----MGDP----DAQYELGCRLRVENDYVQSDQQAFYYI 149 (282)
Q Consensus 83 -~g~----~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~g~~----~A~~~Lg~~y~~g~~~~~d~~~A~~~~ 149 (282)
.++ +.++...+.+|... ++++|+.+|++|++ .|.+ ..+..+|.+|... ..|+++|+++|
T Consensus 67 ~~~~~~~Aa~~~~~Aa~~~k~~-----~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~---~~d~e~Ai~~Y 138 (282)
T PF14938_consen 67 KLGDKFEAAKAYEEAANCYKKG-----DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ---LGDYEKAIEYY 138 (282)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT---T--HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH
Confidence 122 23455667777654 77999999999974 5654 5788899999873 15669999999
Q ss_pred HHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC------C---HHHHHHHHHHHHcCCCCcc
Q 023425 150 EKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG------H---AGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 150 ~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g------~---~~a~~~Lg~~y~~g~g~~~ 212 (282)
++|++. +. ..+...+|.++.. .+++++|++.|++.+..- . ...++..+.|++. .+
T Consensus 139 ~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~----~~ 210 (282)
T PF14938_consen 139 QKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA----MG 210 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH----cC
Confidence 999985 32 4566788999988 889999999999987641 1 2345677888887 67
Q ss_pred cHHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAAK 226 (282)
Q Consensus 213 ~~~~A~~~~~~a~~ 226 (282)
|+..|...+++...
T Consensus 211 D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 211 DYVAARKALERYCS 224 (282)
T ss_dssp -HHHHHHHHHHHGT
T ss_pred CHHHHHHHHHHHHh
Confidence 88877777777653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.6e-07 Score=78.62 Aligned_cols=190 Identities=11% Similarity=-0.066 Sum_probs=139.4
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCc-hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRL-IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.++.++|++.+.+++...+.......+.. ..... ..++++++.++.++++.+|.+..++++.+.++...+. ...++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~-~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~--~~~~~ 126 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRR-LCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP--DAANK 126 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHH-HHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc--hhhHH
Confidence 45689999999999885554433332221 11112 2368999999999999999999999999988875421 12367
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC---CCCccCHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTG---DCVKKDIASA 181 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g---~g~~~d~~~A 181 (282)
++.++.++++ +.+..|+...|.++..- .+++++++++.++++. .+..|++..|.++... .+.....+.+
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l----~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTL----GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 7899999985 56899999999998874 4469999999999986 6899999999887653 1223345678
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 182 LWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 182 ~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.+..+++.. .+..+++.++.++.....-.....++...+..+..
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 9999999865 67899999999998732111334457777766654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-07 Score=77.11 Aligned_cols=112 Identities=13% Similarity=-0.009 Sum_probs=91.7
Q ss_pred CcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH-hcCCCCccC
Q 023425 103 GACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVY-LTGDCVKKD 177 (282)
Q Consensus 103 ~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y-~~g~g~~~d 177 (282)
..+.++++..+++++ +++++++++.||.+|...+ ++++|+..|.+|... +++..+..+|.++ .. .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g----~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~----~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN----DYDNALLAYRQALQLRGENAELYAALATVLYYQ----AGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCC
Confidence 356789999999997 4689999999999999844 459999999999997 6899999999974 44 333
Q ss_pred --HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 178 --IASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 178 --~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.++|...+++++.. .++.++++||..++. .+++++|+.+++++.+
T Consensus 124 ~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 124 HMTPQTREMIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLD 172 (198)
T ss_pred CCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 69999999999886 579999999999998 7777665555555543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.8e-08 Score=76.60 Aligned_cols=91 Identities=12% Similarity=-0.031 Sum_probs=57.7
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhc
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRV 134 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~ 134 (282)
..+......+++++|++.|+..+..+|.++..+++||.++... +++++|+..|.+|+ ++++|.+++++|.+++.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~----g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ----KHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3333333445577777777777777777777777777776644 45677777777765 44567777777777666
Q ss_pred CCCCcCCHHHHHHHHHHHHHc
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.+.. +.|...|+.|+..
T Consensus 116 lG~~----~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNV----CYAIKALKAVVRI 132 (157)
T ss_pred cCCH----HHHHHHHHHHHHH
Confidence 4444 6666666666654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-07 Score=74.12 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 023425 83 NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHP 158 (282)
Q Consensus 83 ~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~ 158 (282)
+..-+..|.+|..+... .++++|...|+..+ ++-+++.+++||.++.. .+++++|+..|.+|+.. ++|
T Consensus 32 ~~~l~~lY~~A~~ly~~----G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEV----KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCc
Confidence 45666778888877765 46788888888887 45678888888888887 55668899999888876 788
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.+.+++|.||+. .++.+.|++.|+.|+..
T Consensus 104 ~~~~~ag~c~L~----lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 104 QAPWAAAECYLA----CDNVCYAIKALKAVVRI 132 (157)
T ss_pred hHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 888899988888 88888888888888764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-06 Score=85.01 Aligned_cols=146 Identities=6% Similarity=-0.135 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHH--HHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYE--LGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~--Lg~~y~~g~~~~~d~~ 143 (282)
++++.|+..|+++++.+|.++.+.+.+..++... .+.++|+.++++++.+.+....-. +|.+|.. .++++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~----G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~----~gdyd 119 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA----GRDQEVIDVYERYQSSMNISSRGLASAARAYRN----EKRWD 119 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc----CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCHH
Confidence 3478999999999999999865555666666644 456899999999997655444444 4778888 55669
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKR 221 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 221 (282)
+|++.|+++++. +++.++..|+..|.. .++.++|++.++++.........+ ++..|.... ..+..+|+..|
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~----~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~--~~~~~~AL~~~ 192 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQAD----AGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA--TDRNYDALQAS 192 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh--cchHHHHHHHH
Confidence 999999999987 678888888888888 799999999999987764433332 555555421 44554588888
Q ss_pred HHHHH
Q 023425 222 VSAAK 226 (282)
Q Consensus 222 ~~a~~ 226 (282)
+++++
T Consensus 193 ekll~ 197 (822)
T PRK14574 193 SEAVR 197 (822)
T ss_pred HHHHH
Confidence 88866
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-07 Score=69.95 Aligned_cols=103 Identities=14% Similarity=0.011 Sum_probs=83.4
Q ss_pred HHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 111 ALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 111 ~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
..|++++. ++++.+.+.+|..+... .++++|..+|++++.. .++.+++.+|.+|.. .+++++|+.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ----GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45677764 45788999999999984 4559999999999886 688999999999998 899999999999
Q ss_pred HHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 187 RASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 187 ~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
+++..+ ++..++++|.+|.. .+++++|..+++++.
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 112 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLA----LGEPESALKALDLAI 112 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 997754 58889999999997 666765555554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-07 Score=89.42 Aligned_cols=127 Identities=6% Similarity=-0.137 Sum_probs=112.0
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHH
Q 023425 53 VIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGC 130 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~ 130 (282)
..++..+......+.+++|..+++.+++..|++..|..+++.++... +..++|..+++++. ++.++.+++.+|.
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~----~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ----QGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh----ccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 34444445555567799999999999999999999999999999977 45699999999997 5789999999999
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
++..-+.+ ++|+..|++++.. +++.++..+|.++.. .++.++|...|++|++.
T Consensus 163 ~l~~~g~~----~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQS----EQADACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcch----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 99996666 9999999999975 578999999999999 89999999999999886
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-06 Score=77.96 Aligned_cols=150 Identities=12% Similarity=-0.093 Sum_probs=110.6
Q ss_pred CchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcC
Q 023425 63 RLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQ 140 (282)
Q Consensus 63 ~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~ 140 (282)
...+++++|...++++++.+|+++.++.. +..+...+........+.+.+.... .++.+.+...+|.++...+..
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~-- 130 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY-- 130 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH--
Confidence 33467999999999999999999988775 4444322222233344444444421 234556777888888884444
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCcc
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH------AGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~------~~a~~~Lg~~y~~g~g~~~ 212 (282)
++|...++++++. .++.++..+|.+|.. .+++++|+.+++++..... ...+..++.++.. .+
T Consensus 131 --~~A~~~~~~al~~~p~~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~----~G 200 (355)
T cd05804 131 --DRAEEAARRALELNPDDAWAVHAVAHVLEM----QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE----RG 200 (355)
T ss_pred --HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH----CC
Confidence 9999999999987 578888999999998 8999999999999987531 2245678999988 88
Q ss_pred cHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAA 225 (282)
Q Consensus 213 ~~~~A~~~~~~a~ 225 (282)
++++|+.+|+++.
T Consensus 201 ~~~~A~~~~~~~~ 213 (355)
T cd05804 201 DYEAALAIYDTHI 213 (355)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998875
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-05 Score=74.01 Aligned_cols=225 Identities=14% Similarity=-0.035 Sum_probs=147.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNT-HARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~-~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.|+++.|...+.++.... +.....+...+......+++++|..+|+++.+..|++. .....++.++... ++++.
T Consensus 97 ~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~----~~~~~ 171 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ----NELHA 171 (409)
T ss_pred CCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC----CCHHH
Confidence 677888888887776532 33334444444555556889999999999998777765 3444468887765 57799
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------------------------------
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ------------------------------- 155 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~------------------------------- 155 (282)
|...+++..+ +.++.+...++.++... +|++.|...+.+..+.
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~----~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRS----GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999874 67999999999998873 3334444444433322
Q ss_pred -------------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHH----HHHHHHHHcCCCCcccHHHHH
Q 023425 156 -------------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAA----IAYGSLLLRGVQVPECLTKLN 218 (282)
Q Consensus 156 -------------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~----~~Lg~~y~~g~g~~~~~~~A~ 218 (282)
.++.....++..+.. .+++++|.+.++++.+....... .-....... +.+.+.+.
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~----~~~~~~~~ 319 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK----PEDNEKLE 319 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC----CCChHHHH
Confidence 245566666666666 78889999999998885332221 112222222 45667777
Q ss_pred HHHHHHHH----HH--ch--hch--hccCCCHHHHHHHHHH--HHHhc-cHHHHHHHHHHHHHHhh
Q 023425 219 AKRVSAAK----KA--RA--NLE--SNLMNPVEKAKEQFEV--AAQAG-CNLGLRWLQRIEEEEKR 271 (282)
Q Consensus 219 ~~~~~a~~----~a--~~--~lg--~~~~~~~~~A~~~~~~--Aa~~g-~~~a~~~l~~l~~~~~~ 271 (282)
..++++.+ .. .. .+| ....+++++|.++|++ +.+.. ++.....|+.+.....+
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~ 385 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGD 385 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCC
Confidence 77777765 22 22 456 3478899999999994 54433 44455677877775543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-05 Score=69.21 Aligned_cols=204 Identities=14% Similarity=0.008 Sum_probs=110.0
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHhcCCCCCcCH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTH-----ARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~-----a~~~Lg~~~~~~~~~~~~~ 106 (282)
+.++|++.|...+... +..-...+..|+-+...+..+.|+..=+-.++ .|+.+. |.+.||.=|...+..
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~---- 123 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLL---- 123 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhh----
Confidence 3677877776655422 22223344444444455556777766665553 344433 444555555544333
Q ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHhcCCCCccC
Q 023425 107 AMGAALLVDAANMG--DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHP-------GALYLLGTVYLTGDCVKKD 177 (282)
Q Consensus 107 ~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~-------~A~~~Lg~~y~~g~g~~~d 177 (282)
+.|...|..-++.| -..|.-.|-.+|.. .+++++|++.-++-...+.- .-+..|+..+.. ..|
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~----treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~ 195 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQA----TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSD 195 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhh
Confidence 66666666666543 24566666666665 55666666666665555322 222334444444 566
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhch---------hccCCCHHHHHHH
Q 023425 178 IASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLE---------SNLMNPVEKAKEQ 246 (282)
Q Consensus 178 ~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg---------~~~~~~~~~A~~~ 246 (282)
+++|+.++.+|++- ..+.|-..||.++.. .+++++|++.++...++-.-.++ +-..++.++...|
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66666666666543 345566666666666 66666666666666653222222 2244455555666
Q ss_pred HHHHHHh
Q 023425 247 FEVAAQA 253 (282)
Q Consensus 247 ~~~Aa~~ 253 (282)
+.++.+.
T Consensus 272 L~~~~~~ 278 (389)
T COG2956 272 LRRAMET 278 (389)
T ss_pred HHHHHHc
Confidence 6555553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.1e-07 Score=80.53 Aligned_cols=96 Identities=15% Similarity=-0.012 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|++|++.+|+++.+++++|.+|... .++++|+..+.+|++ +.++.+++.+|.+|.. ..+++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~----g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~----lg~~~ 87 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKL----GNFTEAVADANKAIELDPSLAKAYLRKGTACMK----LEEYQ 87 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----hCCHH
Confidence 4599999999999999999999999999999976 577999999999975 5789999999999998 45559
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYL 169 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~ 169 (282)
+|+.+|+++++. +++.+...++.|..
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999987 68889888888844
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=3e-06 Score=74.05 Aligned_cols=185 Identities=21% Similarity=0.160 Sum_probs=124.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Q 023425 35 KAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLV 114 (282)
Q Consensus 35 ~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~ 114 (282)
+|.+++.++-..+....+.+.+ . ....+++++|...|++|.. +|... +++++|...|.
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~-f---~~~~~~~e~Aa~~y~~Aa~--------------~fk~~----~~~~~A~~ay~ 59 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSF-F---GSKKPDYEEAADLYEKAAN--------------CFKLA----KDWEKAAEAYE 59 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCH-H-----SCHHHHHHHHHHHHHHH--------------HHHHT----T-CHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccchhhh-c---CCCCCCHHHHHHHHHHHHH--------------HHHHH----hccchhHHHHH
Confidence 5666666665544433111100 0 0123589999999999942 33333 46689999999
Q ss_pred HHHh----CCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCc-cC
Q 023425 115 DAAN----MGD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVK-KD 177 (282)
Q Consensus 115 ~Aa~----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~-~d 177 (282)
+|++ .++ ..++...+.+|... ++++|+.+|++|++. |. +.++.++|.+|.. . +|
T Consensus 60 kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-----~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d 130 (282)
T PF14938_consen 60 KAADCYEKLGDKFEAAKAYEEAANCYKKG-----DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGD 130 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCC
Confidence 9974 344 34566677787764 679999999999885 55 5677899999998 6 89
Q ss_pred HHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH------c-------hhch--h
Q 023425 178 IASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA------R-------ANLE--S 234 (282)
Q Consensus 178 ~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a------~-------~~lg--~ 234 (282)
+++|+++|++|++. +. .....+++.++.. .+++++|+..|++.+... . +..+ .
T Consensus 131 ~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~ 206 (282)
T PF14938_consen 131 YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCH 206 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 99999999999874 33 4457789999998 789999999999988621 1 1122 2
Q ss_pred ccCCCHHHHHHHHHHHHHhc
Q 023425 235 NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 235 ~~~~~~~~A~~~~~~Aa~~g 254 (282)
+..+|...|...|++.....
T Consensus 207 L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 207 LAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHTT-HHHHHHHHHHHGTTS
T ss_pred HHcCCHHHHHHHHHHHHhhC
Confidence 36788999999998887653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.3e-06 Score=80.50 Aligned_cols=148 Identities=16% Similarity=0.065 Sum_probs=119.7
Q ss_pred CchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcC
Q 023425 63 RLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQ 140 (282)
Q Consensus 63 ~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~ 140 (282)
.+.+++++|+..+...|..+|.++.|++.||.+|.+. +|.+++...+..|+ ++++++-|..++.+..+.+.+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqr----Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i-- 223 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQR----GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI-- 223 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHc----ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH--
Confidence 3446799999999999999999999999999999977 47799999999998 578999999999999885444
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCCCc
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH-------AGAAIAYGSLLLRGVQVP 211 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~-------~~a~~~Lg~~y~~g~g~~ 211 (282)
++|..+|.+|+.. .+.+-.+.-+.+|.. .|+..+|...|++...... ....+.....|.. .
T Consensus 224 --~qA~~cy~rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~----~ 293 (895)
T KOG2076|consen 224 --NQARYCYSRAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT----H 293 (895)
T ss_pred --HHHHHHHHHHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH----h
Confidence 9999999999998 466777888999998 8999999999999988755 1123333444443 4
Q ss_pred ccHHHHHHHHHHHHH
Q 023425 212 ECLTKLNAKRVSAAK 226 (282)
Q Consensus 212 ~~~~~A~~~~~~a~~ 226 (282)
.+.+.|++.++.+..
T Consensus 294 ~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 294 NERERAAKALEGALS 308 (895)
T ss_pred hHHHHHHHHHHHHHh
Confidence 444677777666654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3e-05 Score=69.21 Aligned_cols=193 Identities=13% Similarity=0.024 Sum_probs=154.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.++++.|+.+-+|+|+.+|.+..++..-|.++.+.. ..+.|+-.|+.|... -..+.+-.|-..|+..+..
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~----R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~---- 384 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALE----RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF---- 384 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhcc----chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH----
Confidence 488999999999999999999999999999999774 448999999999865 4677777788888885555
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHH-HHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLG-TVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg-~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
.+|...-..+.+. .++.+...+| .+.+. .+.--++|.+++++++.+ ++..|-..++.++.. ++....+
T Consensus 385 kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~---dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~----Eg~~~D~ 457 (564)
T KOG1174|consen 385 KEANALANWTIRLFQNSARSLTLFGTLVLFP---DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV----EGPTKDI 457 (564)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhcceeecc---CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh----hCccchH
Confidence 8998888888775 6888888887 44433 166688999999999775 678888899998876 6777788
Q ss_pred HHHHHHHHH-----HHchhchhc--cCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhhc
Q 023425 218 NAKRVSAAK-----KARANLESN--LMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEKRL 272 (282)
Q Consensus 218 ~~~~~~a~~-----~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~~~ 272 (282)
+..++++.. .-|..||.. ..+.+++|..+|.+|..+. +..+..-|.+++++.+++
T Consensus 458 i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCC
Confidence 888888876 345567733 5667999999999999987 666888888888877643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-05 Score=75.32 Aligned_cols=101 Identities=11% Similarity=-0.017 Sum_probs=77.7
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..|+.++|++.+...++..+. ....++..+..+...||.+++...+-.|+-++|++++-|..++.+.... .+++.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~----~~i~q 225 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL----GNINQ 225 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc----ccHHH
Confidence 458899999999888774443 3455566666666667899999999999999999999999999998866 45699
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 023425 109 GAALLVDAANM--GDPDAQYELGCRLRV 134 (282)
Q Consensus 109 A~~~~~~Aa~~--g~~~A~~~Lg~~y~~ 134 (282)
|..+|.+|++. .+.+-.+.-..+|.+
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQK 253 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 99999999864 455666666666655
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-05 Score=77.36 Aligned_cols=144 Identities=9% Similarity=-0.089 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCC
Q 023425 65 IPLLKTAKENFELALEAD---NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG---DPDAQYELGCRLRVENDY 138 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~---~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~g~~~ 138 (282)
.+++++|.+.|.+..+.. ..+...+..|-..|... .+.++|.+.|+...+.| ++..+..|...|...+.
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~----G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~- 629 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA----GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD- 629 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-
Confidence 345555666655554310 12333444444444433 23455555555555543 33444455555544222
Q ss_pred cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcc
Q 023425 139 VQSDQQAFYYIEKAVDQL---HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG---HAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~ 212 (282)
.++|+..|.+..+.| +...+..|...|.. .+++++|++.|....+.| +...+..|..+|.. .+
T Consensus 630 ---~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k----~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k----~G 698 (1060)
T PLN03218 630 ---WDFALSIYDDMKKKGVKPDEVFFSALVDVAGH----AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN----AK 698 (1060)
T ss_pred ---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CC
Confidence 255555555554443 23333444444444 455555555555555443 23444444444444 44
Q ss_pred cHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSA 224 (282)
Q Consensus 213 ~~~~A~~~~~~a 224 (282)
++++|...|+..
T Consensus 699 ~~eeA~~lf~eM 710 (1060)
T PLN03218 699 NWKKALELYEDI 710 (1060)
T ss_pred CHHHHHHHHHHH
Confidence 455555544443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.2e-05 Score=77.19 Aligned_cols=210 Identities=13% Similarity=0.021 Sum_probs=157.9
Q ss_pred ccchHHHHHHHHHHhhhhh--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhcCCCCCcCH
Q 023425 30 HSRNKKAMELIAKGWSALK--EVDRVIDYCELNDRRLIPLLKTAKENFELALEAD-NSNTHARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~g~~~a~~~Lg~~~~~~~~~~~~~ 106 (282)
.++.++|++++........ .-+...+......+...+++++|.+.|++..+.+ +.++..+..|-..|... .+.
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~----G~~ 630 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK----GDW 630 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc----CCH
Confidence 4667777777766543110 0111222222233444578999999999998765 45678888888888865 567
Q ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHH
Q 023425 107 AMGAALLVDAANMG---DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL---HPGALYLLGTVYLTGDCVKKDIAS 180 (282)
Q Consensus 107 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~ 180 (282)
++|+..|.+..+.| +...+..|...|...+ +.++|++.|....+.| +...+..|...|.. .+++++
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G----~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k----~G~~ee 702 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG----DLDKAFEILQDARKQGIKLGTVSYSSLMGACSN----AKNWKK 702 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHH
Confidence 99999999998876 5567778888888744 4599999999999886 57788889999988 899999
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH-------chhc--hhccCCCHHHHHHHHH
Q 023425 181 ALWCFHRASEKG---HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA-------RANL--ESNLMNPVEKAKEQFE 248 (282)
Q Consensus 181 A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a-------~~~l--g~~~~~~~~~A~~~~~ 248 (282)
|+++|++..+.| +...+..|-..|.. .+++++|...|++....+ +..+ +....++.++|...|.
T Consensus 703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k----~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTVSTMNALITALCE----GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999987654 57778888888877 789999999999876532 2222 3557889999999999
Q ss_pred HHHHhcc
Q 023425 249 VAAQAGC 255 (282)
Q Consensus 249 ~Aa~~g~ 255 (282)
...+.|.
T Consensus 779 ~M~k~Gi 785 (1060)
T PLN03218 779 QAKEDGI 785 (1060)
T ss_pred HHHHcCC
Confidence 9999883
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-05 Score=73.29 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=110.3
Q ss_pred CchhhHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHhcC----C-CCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 023425 63 RLIPLLKTAKENFELAL---EADNSNTHARYWLSKLHLKY----H-VPGACKAMGAALLVDAANM--GDPDAQYELGCRL 132 (282)
Q Consensus 63 ~~~~~~~~A~~~~~~a~---~~~~g~~~a~~~Lg~~~~~~----~-~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y 132 (282)
+.+.+.+.|..+|.+|+ +.+|+++.|+-.++.++... . ..+.+..+|...-++|++. +|+.|++.+|.++
T Consensus 269 ~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~ 348 (458)
T PRK11906 269 FTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLIT 348 (458)
T ss_pred cCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34567899999999999 99999999999999997744 1 2456778999999999864 6999999999987
Q ss_pred hcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHH---HHHHHHH-HHH
Q 023425 133 RVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAG---AAIAYGS-LLL 205 (282)
Q Consensus 133 ~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~---a~~~Lg~-~y~ 205 (282)
...++. +.|+.+|++|... +.+.+++..|.+... .++.++|++++++|+....-. ....+-. +|.
T Consensus 349 ~~~~~~----~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 349 GLSGQA----KVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred Hhhcch----hhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 664444 9999999999988 789999999998888 899999999999999986533 3444444 444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-05 Score=64.40 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L---HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHA 194 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~ 194 (282)
..+++++|.++... .++++|+.+|++++.. + .+.++++||.+|.. .+++++|+.+|++|+.. ...
T Consensus 35 a~~~~~~g~~~~~~----g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 35 AFTYYRDGMSAQSE----GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS----NGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcH
Confidence 45566677776663 3347777777777654 2 23477788888877 78888888888887654 446
Q ss_pred HHHHHHHHHHHcCCC---CcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhcc---HHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQ---VPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGC---NLGLRWLQR 264 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g---~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g~---~~a~~~l~~ 264 (282)
.+..++|.+|..-.. ..++++.|..++ ++|+.+|+++....+ +....++..
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~-------------------~~a~~~~~~a~~~~p~~~~~~~~~~~~ 163 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWF-------------------DQAAEYWKQAIALAPGNYIEAQNWLKI 163 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHH-------------------HHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 667777777762100 155666666665 566677777776665 444444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-05 Score=79.25 Aligned_cols=167 Identities=10% Similarity=-0.068 Sum_probs=117.5
Q ss_pred hcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 28 WLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
...|+++.|++.|.+.++..+.....+. ......+..++.++|+.++++++.-.|....+...+|.++... ++++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~----gdyd 119 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE----KRWD 119 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc----CCHH
Confidence 3488999999999999876555421111 1111222337799999999999844455555555558899865 5789
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 108 MGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 108 ~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+|+..|+++++ +++++++..|+.+|... ...++|+..++++....-. ....++..|... + .++..+|++.|
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~----~q~~eAl~~l~~l~~~dp~-~~~~l~layL~~-~-~~~~~~AL~~~ 192 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADA----GRGGVVLKQATELAERDPT-VQNYMTLSYLNR-A-TDRNYDALQAS 192 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhc----CCHHHHHHHHHHhcccCcc-hHHHHHHHHHHH-h-cchHHHHHHHH
Confidence 99999999984 67899999998888884 4459999999999887222 222255454442 1 55665699999
Q ss_pred HHHHHc--CCHHHHHHHHHHHHc
Q 023425 186 HRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 186 ~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
+++++. ++++....+......
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQR 215 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Confidence 999886 457777666666654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.6e-06 Score=76.83 Aligned_cols=140 Identities=21% Similarity=0.074 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCC----cCHHH
Q 023425 33 NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPG----ACKAM 108 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~----~~~~~ 108 (282)
.-.|.+.|.+|...+. .....++.+|+.+|++|++.+|+++.++-.|+.+|....... .+...
T Consensus 336 ~~~Ay~~~lrg~~~~~-------------~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~ 402 (517)
T PRK10153 336 QGAALTLFYQAHHYLN-------------SGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAA 402 (517)
T ss_pred CHHHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 4567777776654321 223556899999999999999999999999988876432221 12355
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 109 GAALLVDAAN----MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-HPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 109 A~~~~~~Aa~----~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
+.....++.. ..++.++..+|.+... ..++++|...+++|++.+ +..++..+|.++.. .|++++|+.
T Consensus 403 a~~~~~~a~al~~~~~~~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~ 474 (517)
T PRK10153 403 LSTELDNIVALPELNVLPRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAAD 474 (517)
T ss_pred HHHHHHHhhhcccCcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHH
Confidence 5666666543 3467888889988776 345699999999999883 67888999999999 999999999
Q ss_pred HHHHHHHcCC
Q 023425 184 CFHRASEKGH 193 (282)
Q Consensus 184 ~~~~A~~~g~ 193 (282)
+|++|.....
T Consensus 475 ~~~~A~~L~P 484 (517)
T PRK10153 475 AYSTAFNLRP 484 (517)
T ss_pred HHHHHHhcCC
Confidence 9999988754
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=65.09 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--C
Q 023425 120 GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-----HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--G 192 (282)
Q Consensus 120 g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g 192 (282)
+.+.+++++|..+.. ..++++|+.+|+++++.. .+.+++++|.+|.. .+++++|+.+|++++.. .
T Consensus 33 ~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 33 KEAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKALEYYHQALELNPK 104 (172)
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcc
Confidence 345566666666665 333366666666666431 24567777777777 67777777777777664 4
Q ss_pred CHHHHHHHHHHHHc
Q 023425 193 HAGAAIAYGSLLLR 206 (282)
Q Consensus 193 ~~~a~~~Lg~~y~~ 206 (282)
++.++..+|.+|..
T Consensus 105 ~~~~~~~lg~~~~~ 118 (172)
T PRK02603 105 QPSALNNIAVIYHK 118 (172)
T ss_pred cHHHHHHHHHHHHH
Confidence 56677777777765
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.9e-06 Score=63.46 Aligned_cols=111 Identities=23% Similarity=0.158 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-C----HHHHHHHHHHHhcCCCC
Q 023425 67 LLKTAKENFELALEADNSN---THARYWLSKLHLKYHVPGACKAMGAALLVDAANMG-D----PDAQYELGCRLRVENDY 138 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~---~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~----~~A~~~Lg~~y~~g~~~ 138 (282)
+..++...+++.++..|+. +.+.+.++.++... .++++|+..|+.+++.. + +.+.+.|+.++..
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~----g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~---- 97 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQ----GDYDEAKAALEKALANAPDPELKPLARLRLARILLQ---- 97 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----
Confidence 3677777788887777777 56677788887755 57789999999988654 2 3477888888887
Q ss_pred cCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 139 VQSDQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
..++++|+..+...... -.+.+...+|.+|.. .+++++|+..|++|+
T Consensus 98 ~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~----~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 QGQYDEALATLQQIPDEAFKALAAELLGDIYLA----QGDYDEARAAYQKAL 145 (145)
T ss_pred cCCHHHHHHHHHhccCcchHHHHHHHHHHHHHH----CCCHHHHHHHHHHhC
Confidence 44558888888664333 346677778888888 888999988888873
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.8e-05 Score=64.60 Aligned_cols=129 Identities=15% Similarity=0.026 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.++-+.+..+..+++...|.+++....+|...... .++..|+..+.+++. +.+++++.-+|.+|.+-++.
T Consensus 79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~----g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~---- 150 (257)
T COG5010 79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN----GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF---- 150 (257)
T ss_pred cccccchHHHHhhhhccCcccHHHHHHHHHHHHHh----cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh----
Confidence 34444555555554445555555554455554433 344666666666653 34566666666666654444
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLL 205 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~ 205 (282)
+.|..-|.+|.+. +.+....|||..|.- .+|++.|..++..+...+ +....-||+...-
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~ 213 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAETLLLPAYLSPAADSRVRQNLALVVG 213 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 6666666666554 556666666655555 566666666666655543 3444445554443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.39 E-value=4e-05 Score=68.78 Aligned_cols=175 Identities=14% Similarity=-0.136 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCC
Q 023425 67 LLKTAKENFELALEADNSN---THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~---~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d 141 (282)
+.+.+.+.+.++....+.+ .+..+..+.++... .+.++|...++++.+ +.++.++.. +..+..-+.....
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~----g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~ 95 (355)
T cd05804 21 ERPAAAAKAAAAAQALAARATERERAHVEALSAWIA----GDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGM 95 (355)
T ss_pred CcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccC
Confidence 4666677777777665544 45566667777654 577999999999985 566666654 4343332222222
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 142 DQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
...+...+...... +...+...+|.++.. .+++++|+..++++++. .++.++..+|.+|.. .+++++|
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~----~g~~~eA 167 (355)
T cd05804 96 RDHVARVLPLWAPENPDYWYLLGMLAFGLEE----AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM----QGRFKEG 167 (355)
T ss_pred chhHHHHHhccCcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHH
Confidence 34444444442222 445677788889998 89999999999999886 467789999999998 8999999
Q ss_pred HHHHHHHHHH----------Hchhch--hccCCCHHHHHHHHHHHHHhc
Q 023425 218 NAKRVSAAKK----------ARANLE--SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 218 ~~~~~~a~~~----------a~~~lg--~~~~~~~~~A~~~~~~Aa~~g 254 (282)
..+++++... .+..++ ....+++++|+.+|+++....
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 9999998862 222455 348899999999999987544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=72.73 Aligned_cols=95 Identities=12% Similarity=0.011 Sum_probs=83.8
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIA 179 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~ 179 (282)
+++++|+..|++|++ ++++.+++++|.+|... .++++|+..+.+|++. .++.+++++|.+|.. .++++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~----g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~----lg~~~ 87 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKL----GNFTEAVADANKAIELDPSLAKAYLRKGTACMK----LEEYQ 87 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----hCCHH
Confidence 688999999999985 57899999999999984 4559999999999987 689999999999999 99999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 180 SALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 180 ~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
+|+.+|++++.. +++.+...++.|...
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999876 578888888887543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=67.84 Aligned_cols=118 Identities=13% Similarity=-0.065 Sum_probs=100.6
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcC
Q 023425 58 ELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVE 135 (282)
Q Consensus 58 ~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g 135 (282)
++......+|+..|+..++++....|.+++++..||.+|.+. .+.+.|-.-|.+|.+ .+.+....|||+.|.-
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~----Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L- 180 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL----GRFDEARRAYRQALELAPNEPSIANNLGMSLLL- 180 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc----cChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-
Confidence 444555567899999999999999999999999999999987 456999999999986 5799999999999987
Q ss_pred CCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 136 NDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
..|.+.|..++..+... .+.....+|+.+.-. .+|+..|...-.+
T Consensus 181 ---~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~----~g~~~~A~~i~~~ 227 (257)
T COG5010 181 ---RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL----QGDFREAEDIAVQ 227 (257)
T ss_pred ---cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh----cCChHHHHhhccc
Confidence 44559999999999987 477888889988776 8999988766544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.8e-05 Score=72.10 Aligned_cols=164 Identities=19% Similarity=0.123 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCCcCCHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG---DPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+..+|....++-++ +|++|..|-.||.+..+. .+|++|.+.+ +..|+..+|..... .+|+.
T Consensus 439 ~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~-----------s~yEkawElsn~~sarA~r~~~~~~~~----~~~fs 502 (777)
T KOG1128|consen 439 QHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP-----------SLYEKAWELSNYISARAQRSLALLILS----NKDFS 502 (777)
T ss_pred ccchHHHHHHHHhc-CCCcchhHHHhhhhccCh-----------HHHHHHHHHhhhhhHHHHHhhcccccc----chhHH
Confidence 46889999999987 789999999999988754 5677776554 45677888877666 46669
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
++..+++.+.+. +....+|.+|.+... .+++..|.++|...+. .++.+++.||+..|.. .+.-.+|+.
T Consensus 503 ~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~ 574 (777)
T KOG1128|consen 503 EADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFR 574 (777)
T ss_pred HHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH----HhhhHHHHH
Confidence 999999999987 689999999999999 9999999999999866 5889999999999998 788888999
Q ss_pred HHHHHHHH------Hchhch--hccCCCHHHHHHHHHHHHHhc
Q 023425 220 KRVSAAKK------ARANLE--SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 220 ~~~~a~~~------a~~~lg--~~~~~~~~~A~~~~~~Aa~~g 254 (282)
.++.|..- .|-|-- ...-++++.|+..|.+-.+..
T Consensus 575 ~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 575 KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999872 222322 335668899999888877755
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.9e-05 Score=63.36 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHhcCCCC
Q 023425 66 PLLKTAKENFELALEADNSN--THARYWLSKLHLKYHVPGACKAMGAALLVDAANM--G---DPDAQYELGCRLRVENDY 138 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~--~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~~g~~~ 138 (282)
+++..+..++..-+...+.+ ..+++.+|.++... .++++|+.+|++|+.. + .+.+++++|.+|...+.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~----g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~- 87 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSE----GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE- 87 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-
Confidence 33444445554433333333 45567778777754 4678888888888744 3 23578888888888444
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC---CCccCHHHHHHHHHHH
Q 023425 139 VQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGD---CVKKDIASALWCFHRA 188 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~---g~~~d~~~A~~~~~~A 188 (282)
+++|+.+|++|... .++.++.++|.+|..-. ...++++.|+.++.+|
T Consensus 88 ---~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 88 ---HTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred ---HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 48888888888775 56777788887777200 0156666555555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-05 Score=78.17 Aligned_cols=172 Identities=13% Similarity=0.006 Sum_probs=138.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.++.+.|+..|-+++..++..+.++-.||.+|... .|...|.++|.+|-+ .++.++.-.++..|.+ ..++
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~----~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae----~~~w 542 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDS----DDMKRAKKCFDKAFELDATDAEAAAASADTYAE----ESTW 542 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc----cccH
Confidence 46789999999999999999999999999999965 378999999999975 4678888889999988 7778
Q ss_pred HHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHH
Q 023425 143 QQAFYYIEKAVDQLH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTK 216 (282)
Q Consensus 143 ~~A~~~~~kAa~~g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~ 216 (282)
+.|......+++... ...+..+|..|.+ .+++..|+.+|+-|..- .+..++..||..|.. .+.+..
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~----sGry~~ 614 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLE----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE----SGRYSH 614 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccC----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh----cCceeh
Confidence 999998877777633 4455668999998 99999999999999765 578899999999998 788889
Q ss_pred HHHHHHHHHH------HHchhchhc--cCCCHHHHHHHHHHHHH
Q 023425 217 LNAKRVSAAK------KARANLESN--LMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 217 A~~~~~~a~~------~a~~~lg~~--~~~~~~~A~~~~~~Aa~ 252 (282)
|.+.|.+|.. -+.|....+ ..+.+.+|+.-+.+-+.
T Consensus 615 AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 615 ALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999976 233333322 45556666665555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=58.38 Aligned_cols=61 Identities=30% Similarity=0.380 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCcc-CHHHHHHHHHHHHH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKK-DIASALWCFHRASE 190 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~ 190 (282)
+..++.+|.++.. ..++++|+.+|+++++. .++.+++++|.+|.. .+ ++++|+++|++|++
T Consensus 3 a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHHHHHHHHHH
Confidence 4445555555555 33335555555555544 345555555555555 44 45555555555543
|
... |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.3e-05 Score=70.10 Aligned_cols=194 Identities=19% Similarity=0.126 Sum_probs=135.7
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-CHHHHHH--------
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG-DPDAQYE-------- 127 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~A~~~-------- 127 (282)
..|+.....++++.|+++|.++++++ ++..-+.+.+-.|... ..+...+.....|++.| ...+.++
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~----~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLER----GKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhc----cHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555566788999999999999998 7777777788887755 34566666666677665 3333333
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCH---------------------------HHHHHHHHHHhcCCCCccCHH
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ-LHP---------------------------GALYLLGTVYLTGDCVKKDIA 179 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~~---------------------------~A~~~Lg~~y~~g~g~~~d~~ 179 (282)
+|..|.. ..+++.|+.||+++... -.+ .....=|..++. .+|+.
T Consensus 304 ~g~a~~k----~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy~ 375 (539)
T KOG0548|consen 304 LGNAYTK----REDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDYP 375 (539)
T ss_pred hhhhhhh----HHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCHH
Confidence 3444444 46779999999998662 111 111223666666 89999
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHH
Q 023425 180 SALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEV 249 (282)
Q Consensus 180 ~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~ 249 (282)
.|+..|.+|+... ++..+.|.+.||.. -.++..|+.-.+.+++ .++..-|. ...+++++|...|.+
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~k----L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLK----LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999874 68889999999998 7778888777777776 35555553 366788899999999
Q ss_pred HHHhccH--HHHHHHHHHHH
Q 023425 250 AAQAGCN--LGLRWLQRIEE 267 (282)
Q Consensus 250 Aa~~g~~--~a~~~l~~l~~ 267 (282)
+.+..+. .+...+.+...
T Consensus 452 ale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHhcCchhHHHHHHHHHHHH
Confidence 8887733 33334444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-05 Score=63.95 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG-----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L 156 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g 156 (282)
..+.+++.+|..+... .++++|+.+|+++++.. .+.+++++|.++...+ ++++|+.+|.+++.. .
T Consensus 33 ~~a~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 33 KEAFVYYRDGMSAQAD----GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG----EHDKALEYYHQALELNPK 104 (172)
T ss_pred hhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCcc
Confidence 4566778888887755 56788888888887432 2467888888888744 448888888888876 5
Q ss_pred CHHHHHHHHHHHhc
Q 023425 157 HPGALYLLGTVYLT 170 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~ 170 (282)
++.++..+|.+|..
T Consensus 105 ~~~~~~~lg~~~~~ 118 (172)
T PRK02603 105 QPSALNNIAVIYHK 118 (172)
T ss_pred cHHHHHHHHHHHHH
Confidence 67788888888766
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.6e-05 Score=77.06 Aligned_cols=159 Identities=12% Similarity=-0.086 Sum_probs=103.5
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
..+++++|+...+.+++..|+.+..+|.+|.++...+. ...+. ...++.+... ..++
T Consensus 43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~----~~~~~--------------lv~~l~~~~~----~~~~- 99 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP----LNDSN--------------LLNLIDSFSQ----NLKW- 99 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc----hhhhh--------------hhhhhhhccc----ccch-
Confidence 44556666666666666666666666666665543311 11110 0022222111 2233
Q ss_pred HHHHHHHHHHH-c-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 144 QAFYYIEKAVD-Q-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 144 ~A~~~~~kAa~-~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
.+++++....- . .+..|++.||.||.. .++.++|...|+++++. .++.+..++|..|.. . |.++|..
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk----~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA~~ 170 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAK----LNENKKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKAIT 170 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHHHH
Confidence 55666555443 3 466799999999999 99999999999999886 579999999999998 5 9999999
Q ss_pred HHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhccHHHHH
Q 023425 220 KRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLR 260 (282)
Q Consensus 220 ~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g~~~a~~ 260 (282)
++.+|+.. .+..+.+..+.+++.+-++.....-..
T Consensus 171 m~~KAV~~------~i~~kq~~~~~e~W~k~~~~~~~d~d~ 205 (906)
T PRK14720 171 YLKKAIYR------FIKKKQYVGIEEIWSKLVHYNSDDFDF 205 (906)
T ss_pred HHHHHHHH------HHhhhcchHHHHHHHHHHhcCcccchH
Confidence 99999885 333445566666666666666554433
|
|
| >smart00671 SEL1 Sel1-like repeats | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.3e-06 Score=51.06 Aligned_cols=34 Identities=44% Similarity=0.586 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
.|++.||.+|..|.++++|.++|+.||++|+++|
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 4566666666666666666666666666666554
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.1e-05 Score=65.85 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
...+.-+.-.+.-+..+|+|++.|..||.+|... .+...|..-|.+|.+ ..+++...-+|.++....+ .++..
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~----~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~~ta 210 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMAL----GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQMTA 210 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CcccH
Confidence 4477778888888889999999999999999977 466999999999985 5699999999988876554 56679
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
++...|++++.. .++.+.+.||.-++. .+|+.+|+..+++-++...
T Consensus 211 ~a~~ll~~al~~D~~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 211 KARALLRQALALDPANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCC
Confidence 999999999987 689999999999999 9999999999999877654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.24 E-value=3e-05 Score=57.75 Aligned_cols=93 Identities=22% Similarity=0.119 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---
Q 023425 87 HARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GD---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L--- 156 (282)
Q Consensus 87 ~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g--- 156 (282)
+.++.+|..+... +++++|+..|.++++. ++ +.+++.+|.++.. ..++++|+.+|+++... +
T Consensus 3 ~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 3 EAYYDAALLVLKA----GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHCCCCCc
Confidence 3445555555543 3445555555555432 21 3455555555555 22235555555555543 1
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.+.+++.+|.+|.. .+++++|+.++.++++.
T Consensus 75 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 APDALLKLGMSLQE----LGDKEKAKATLQQVIKR 105 (119)
T ss_pred ccHHHHHHHHHHHH----hCChHHHHHHHHHHHHH
Confidence 13445555555554 45555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.5e-06 Score=58.14 Aligned_cols=79 Identities=24% Similarity=0.230 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH-HhCCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 66 PLLKTAKENFELALEADNS--NTHARYWLSKLHLKYHVPGACKAMGAALLVDA-ANMGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g--~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~A-a~~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
+++++|+.+|++.++.+|. ++..++.||.+|... +++++|+.++++. ....+++..+.+|.++.. ..++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~----~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~----l~~y 74 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ----GKYEEAIELLQKLKLDPSNPDIHYLLARCLLK----LGKY 74 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT----THHHHHHHHHHCHTHHHCHHHHHHHHHHHHHH----TT-H
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC----CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCH
Confidence 4577777777777776664 344555567777755 4567777777662 133455666666776666 3333
Q ss_pred HHHHHHHHHH
Q 023425 143 QQAFYYIEKA 152 (282)
Q Consensus 143 ~~A~~~~~kA 152 (282)
++|+..|++|
T Consensus 75 ~eAi~~l~~~ 84 (84)
T PF12895_consen 75 EEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 6776666654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00022 Score=70.65 Aligned_cols=61 Identities=20% Similarity=0.099 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 121 ~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
+..|++.||.+|...+.. ++|...|+++++. .++.++.++|..|.. . |+++|++++.+|+.
T Consensus 115 ~k~Al~~LA~~Ydk~g~~----~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 115 NKLALRTLAEAYAKLNEN----KKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIY 177 (906)
T ss_pred hhHHHHHHHHHHHHcCCh----HHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHH
Confidence 344666666666653333 6666666666655 456666666666665 4 66666666666654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.6e-05 Score=57.33 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CC---CHHHHHHHHHHHhcCC
Q 023425 65 IPLLKTAKENFELALEADNSN---THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MG---DPDAQYELGCRLRVEN 136 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~---~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g---~~~A~~~Lg~~y~~g~ 136 (282)
.+++++|+..|+++++..|++ +.+++.+|.++... .+++.|+.+|+++.. ++ .+.+++.+|.++..
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-- 88 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ----GKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-- 88 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH--
Confidence 344444444444444444433 33444444444433 233444444444442 12 13444444444444
Q ss_pred CCcCCHHHHHHHHHHHHHc
Q 023425 137 DYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~ 155 (282)
..++++|+.+|.++.+.
T Consensus 89 --~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 89 --LGDKEKAKATLQQVIKR 105 (119)
T ss_pred --hCChHHHHHHHHHHHHH
Confidence 22234444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.4e-06 Score=55.34 Aligned_cols=62 Identities=24% Similarity=0.269 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcc-cHHHHHHHHHHHHH
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPE-CLTKLNAKRVSAAK 226 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~ 226 (282)
++..++.+|.++.. .+++++|+.+|++|++. .++.+++++|.+|.. .+ ++++|+.+++++++
T Consensus 2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHHHHHHHHHH
Confidence 57889999999999 99999999999999886 568899999999998 55 67776666666643
|
... |
| >PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway [] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-06 Score=51.13 Aligned_cols=36 Identities=39% Similarity=0.632 Sum_probs=21.7
Q ss_pred HHHHHHHH--HHHhcCC-CCccCHHHHHHHHHHHHHcCC
Q 023425 158 PGALYLLG--TVYLTGD-CVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 158 ~~A~~~Lg--~~y~~g~-g~~~d~~~A~~~~~~A~~~g~ 193 (282)
|+|++.|| .+|..|. ++++|.++|++||++|++.|+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 35666666 5556665 566666666666666666553
|
Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00029 Score=67.27 Aligned_cols=105 Identities=23% Similarity=0.171 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
+|..++.+|... -.+..++..|.++.. .+...+|.+.|.-|.. .+++.++..||.++..+. .+.......
T Consensus 668 ~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~----~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G--~~~la~~~~ 741 (799)
T KOG4162|consen 668 EARSCLLEASKIDPLSASVYYLRGLLLEV----KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG--SPRLAEKRS 741 (799)
T ss_pred HHHHHHHHHHhcchhhHHHHHHhhHHHHH----HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CcchHHHHH
Confidence 344444444433 234445666777766 8999999999998854 578999999999999854 333333444
Q ss_pred HHHHHHH------HHchhchhc--cCCCHHHHHHHHHHHHHhc
Q 023425 220 KRVSAAK------KARANLESN--LMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 220 ~~~~a~~------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g 254 (282)
....+++ .+|+.+|.+ ..||.++|.++|.-|+++-
T Consensus 742 ~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 742 LLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 7777876 699999955 7789999999999998765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-05 Score=54.60 Aligned_cols=89 Identities=22% Similarity=0.220 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 023425 89 RYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLL 164 (282)
Q Consensus 89 ~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~L 164 (282)
++.+|.++... .++++|+.+++++++. .++.+++.+|.++.. ..++++|+.+|+++... .++.+++.+
T Consensus 3 ~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKL----GDYDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEALEDYEKALELDPDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHH----hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 44445544443 3345555555555432 233444455555444 22235555555554443 233444445
Q ss_pred HHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 165 GTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 165 g~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
|.++.. .+++++|..++.++.
T Consensus 75 ~~~~~~----~~~~~~a~~~~~~~~ 95 (100)
T cd00189 75 GLAYYK----LGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHH----HHhHHHHHHHHHHHH
Confidence 555444 444555555544443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.7e-05 Score=54.12 Aligned_cols=81 Identities=26% Similarity=0.229 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++..|.++.+++.+|.++... .++++|+.+|+++++. .++.+++.+|.++.. ..++
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 84 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL----GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK----LGKY 84 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH----HHhH
Confidence 34455555555555544444444555555554433 2334555555554432 233444445544444 2223
Q ss_pred HHHHHHHHHHH
Q 023425 143 QQAFYYIEKAV 153 (282)
Q Consensus 143 ~~A~~~~~kAa 153 (282)
++|..++.++.
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 44555444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00063 Score=60.99 Aligned_cols=196 Identities=15% Similarity=0.013 Sum_probs=146.2
Q ss_pred CCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcC
Q 023425 61 DRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQ 140 (282)
Q Consensus 61 ~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~ 140 (282)
-....++..+|+..|+++.-++|...+++-.+|.++...++.++ ..++-.+..++..-...-++.-|.++.+ .+
T Consensus 241 ~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~--~~~L~~~Lf~~~~~ta~~wfV~~~~l~~----~K 314 (564)
T KOG1174|consen 241 CLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ--DSALMDYLFAKVKYTASHWFVHAQLLYD----EK 314 (564)
T ss_pred hhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh--HHHHHHHHHhhhhcchhhhhhhhhhhhh----hh
Confidence 34445789999999999999999999999999999887665533 4455556666665566667777777776 67
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHH
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTK 216 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~ 216 (282)
++..|+.+-+|+++. .+.+|+..-|..+.. .+++++|+..|+.|.... .-+.+-.|-.+|.- .+.+.+
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA----~~~~kE 386 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA----QKRFKE 386 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh----hchHHH
Confidence 779999999999987 689999999999999 999999999999997765 46677778888887 455555
Q ss_pred HHHHHHHHHH------HHchhchhc----cCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHh
Q 023425 217 LNAKRVSAAK------KARANLESN----LMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 217 A~~~~~~a~~------~a~~~lg~~----~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
|...-+.+.. ++..-+|.. .+.--++|..+++++..+. +..|...++++..-+.
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 5444443333 233345521 3344688999999998754 6778778887776543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0003 Score=64.64 Aligned_cols=127 Identities=14% Similarity=0.027 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
+.+++.+..+....++|.-+...-.=|.-++.. +|+.+|+..|.+|++ +.++..+.|.+.+|..-+.+ ..
T Consensus 339 ~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~----gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~----~~ 410 (539)
T KOG0548|consen 339 EAEKALKEAERKAYINPEKAEEEREKGNEAFKK----GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY----PE 410 (539)
T ss_pred HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH----HH
Confidence 345555555554445444444444445554433 456666666666663 45666666666666663333 66
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Q 023425 145 AFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH--AGAAIAYGSLLL 205 (282)
Q Consensus 145 A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~--~~a~~~Lg~~y~ 205 (282)
|+.-.+++++. .+..++++=|.++.. .+++++|++.|+++.+.+. .++.-.+..|+.
T Consensus 411 aL~Da~~~ieL~p~~~kgy~RKg~al~~----mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 411 ALKDAKKCIELDPNFIKAYLRKGAALRA----MKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 66666666665 455666666666666 6666666666666665542 333334444444
|
|
| >smart00671 SEL1 Sel1-like repeats | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.2e-06 Score=48.45 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC
Q 023425 123 DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL 156 (282)
Q Consensus 123 ~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g 156 (282)
+|++.||.+|..|.++++|..+|+.||++|++.|
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 4555555555555555555555555555555554
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.9e-05 Score=72.69 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=109.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Q 023425 37 MELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDA 116 (282)
Q Consensus 37 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~A 116 (282)
..++.++|...+.......+..+......++++++.++++.+++++|..+..||.+|.+..+. .+...|...|.+.
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql----ek~q~av~aF~rc 545 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL----EKEQAAVKAFHRC 545 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH----hhhHHHHHHHHHH
Confidence 345555555444444444555555555568999999999999999999999999999999876 5679999999998
Q ss_pred H--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 117 A--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 117 a--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
. ++++.+++.||+..|.. .++.++|...+++|.+- ++..-+-|--.+-.+ .+.+++|++.|++-++
T Consensus 546 vtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd----vge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD----VGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh----cccHHHHHHHHHHHHH
Confidence 7 78999999999999998 44448999999999876 455555454444445 6788899988888755
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00015 Score=71.35 Aligned_cols=167 Identities=12% Similarity=-0.096 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCCcCCH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG---DPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
+++++|.+.|+.. .+.+..+|..|...|... .+.++|+..|++..+.| +...+..+...+...+..
T Consensus 273 g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~----g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~---- 341 (697)
T PLN03081 273 GDIEDARCVFDGM---PEKTTVAWNSMLAGYALH----GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL---- 341 (697)
T ss_pred CCHHHHHHHHHhC---CCCChhHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch----
Confidence 4556666666544 233555555555555544 33466666666655443 344555555555553333
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 143 QQAFYYIEKAVDQL---HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 143 ~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
++|.+.+....+.| +...+..|..+|.. .+++++|...|++..+ .+..++..|...|.. .++.++|+.
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k----~G~~~~A~~vf~~m~~-~d~~t~n~lI~~y~~----~G~~~~A~~ 412 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSK----WGRMEDARNVFDRMPR-KNLISWNALIAGYGN----HGRGTKAVE 412 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHH----CCCHHHHHHHHHhCCC-CCeeeHHHHHHHHHH----cCCHHHHHH
Confidence 56666666665554 33445555566655 5666666666665443 344455555555555 556666666
Q ss_pred HHHHHHHHHc-------hhc--hhccCCCHHHHHHHHHHHHH
Q 023425 220 KRVSAAKKAR-------ANL--ESNLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 220 ~~~~a~~~a~-------~~l--g~~~~~~~~~A~~~~~~Aa~ 252 (282)
.|++....+. ..+ +....++.++|.++|+...+
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 6666554211 111 13356666667776666654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=7e-05 Score=70.33 Aligned_cols=180 Identities=14% Similarity=0.044 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
++.++|+++++.+++.-|..+.-+..+|.+++.- .+.+.|...|....+ ++.+.-+..|+.+-...+.. -
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~----~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~----~ 736 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQM----ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL----V 736 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHH----HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch----h
Confidence 3355555555555555555555555555555533 233444444444443 24444444454444332222 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVS 223 (282)
Q Consensus 144 ~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 223 (282)
+|...+.++--.+-..+.+.|..+-.+- ..++.++|.....+|++.=...+...-..+.+.+. ++.-.+++..+++
T Consensus 737 rAR~ildrarlkNPk~~~lwle~Ir~El--R~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~--~~rkTks~DALkk 812 (913)
T KOG0495|consen 737 RARSILDRARLKNPKNALLWLESIRMEL--RAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR--PQRKTKSIDALKK 812 (913)
T ss_pred hHHHHHHHHHhcCCCcchhHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC--cccchHHHHHHHh
Confidence 5555555544443333333333322210 13445555555555554433333333333333322 1222333333333
Q ss_pred HHHHHchhc--h--hccCCCHHHHHHHHHHHHHhccHH
Q 023425 224 AAKKARANL--E--SNLMNPVEKAKEQFEVAAQAGCNL 257 (282)
Q Consensus 224 a~~~a~~~l--g--~~~~~~~~~A~~~~~~Aa~~g~~~ 257 (282)
.-...|..+ + ......+++|+.||.+|++.++..
T Consensus 813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 332222222 2 226678899999999999877444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00018 Score=70.47 Aligned_cols=178 Identities=13% Similarity=-0.008 Sum_probs=130.7
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAA 111 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~ 111 (282)
+.+.|+..+-++++........+. ..|..+.-.-|...|.+.|++|-++|+++.++.-.+...|... .+.+.|..
T Consensus 473 ~~~~al~ali~alrld~~~apaf~-~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~----~~we~a~~ 547 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFA-FLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEE----STWEEAFE 547 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc----ccHHHHHH
Confidence 355566666666554333222211 1122222223788899999999999999999999999999865 67899999
Q ss_pred HHHHHHhCCCH----HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 112 LLVDAANMGDP----DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 112 ~~~~Aa~~g~~----~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
....+.+.... +.+...|..|.+ +++...|+.+|+-|.+. .+..++..||..|.. .+.+.-|++.|
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLe----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~----sGry~~AlKvF 619 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLE----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE----SGRYSHALKVF 619 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccC----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh----cCceehHHHhh
Confidence 88888765433 445557888887 66679999999999887 789999999999999 89999999999
Q ss_pred HHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 186 HRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 186 ~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.||.... +..+.|..+.+.-. .+.+..|+.-+..-+.
T Consensus 620 ~kAs~LrP~s~y~~fk~A~~ecd----~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 620 TKASLLRPLSKYGRFKEAVMECD----NGKYKEALDALGLIIY 658 (1238)
T ss_pred hhhHhcCcHhHHHHHHHHHHHHH----hhhHHHHHHHHHHHHH
Confidence 9997765 46677777777665 5556666665555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.2e-05 Score=67.34 Aligned_cols=103 Identities=17% Similarity=-0.023 Sum_probs=84.6
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhc
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRV 134 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 134 (282)
+.|+.....++|.+|+..|.+||+++|.++.-+-+-+-.|... ..++.|++-.+.|+. +.+..|+..||..|..
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L----g~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL----GEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh----cchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 4445555567799999999999999999999999999999877 355999999999985 4578999999999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTV 167 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~ 167 (282)
.+.+ .+|++.|+||++. .+.....+|...
T Consensus 162 ~gk~----~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 162 LGKY----EEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred cCcH----HHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 7777 9999999999998 456555555554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00013 Score=71.73 Aligned_cols=112 Identities=11% Similarity=-0.056 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCCcCC
Q 023425 66 PLLKTAKENFELALEAD-NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG---DPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~-~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~g~~~~~d 141 (282)
+++++|+..|++..+.. ..+...+..+...+... .+.++|.+.+....+.| +...+..|..+|...+.+
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~----g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~--- 376 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL----ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM--- 376 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH---
Confidence 44555655555554321 12334444444444433 23345555555554443 233444444444442222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 142 DQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 142 ~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
++|...|.+..+ .+..++..|...|.. .++.++|++.|++..+
T Consensus 377 -~~A~~vf~~m~~-~d~~t~n~lI~~y~~----~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 377 -EDARNVFDRMPR-KNLISWNALIAGYGN----HGRGTKAVEMFERMIA 419 (697)
T ss_pred -HHHHHHHHhCCC-CCeeeHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 444444444322 233344444444443 3444444444444433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00026 Score=64.64 Aligned_cols=164 Identities=9% Similarity=0.011 Sum_probs=124.9
Q ss_pred CCCCH---HHH----HHHHHHHhcCCCCCcCHHHHHHHHHHHH-----hCCCHHHHHHHHHHHhcC----C-CCcCCHHH
Q 023425 82 DNSNT---HAR----YWLSKLHLKYHVPGACKAMGAALLVDAA-----NMGDPDAQYELGCRLRVE----N-DYVQSDQQ 144 (282)
Q Consensus 82 ~~g~~---~a~----~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa-----~~g~~~A~~~Lg~~y~~g----~-~~~~d~~~ 144 (282)
.|++. ++| |..|...... +.+.+.+.|..+|.+|+ +++++.|+..++.++... . ..+.+..+
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~-~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~ 322 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYD-FTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQK 322 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhc-cCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 35555 555 5556555433 34567899999999998 457899999999887643 2 34556789
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 023425 145 AFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAK 220 (282)
Q Consensus 145 A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 220 (282)
|...-++|.+. +++.|.+.+|.+... .++++.|..+|++|... +.+.+++..|..... .++.+.|..+
T Consensus 323 a~~~A~rAveld~~Da~a~~~~g~~~~~----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~ 394 (458)
T PRK11906 323 ALELLDYVSDITTVDGKILAIMGLITGL----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 99999999998 689999999998877 78899999999999776 568899999998887 7889999999
Q ss_pred HHHHHHHHchh---------chhccCCCHHHHHHHHHHHHHhc
Q 023425 221 RVSAAKKARAN---------LESNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 221 ~~~a~~~a~~~---------lg~~~~~~~~~A~~~~~~Aa~~g 254 (282)
.++|.+..=.. +...++...+.|+.+|-|--+.-
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESE 437 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccccc
Confidence 99998732222 22346677778888776655443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.3e-05 Score=55.32 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCH
Q 023425 105 CKAMGAALLVDAANMG----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDI 178 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~ 178 (282)
+++.|+.+|++.++.. +...++.||.+|+. ..++++|+.++++ ... .++...+.+|.++.. .+++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~----l~~y 74 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK----LGKY 74 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH----TT-H
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH----hCCH
Confidence 4555666666655321 23344445655555 2333556665555 221 344555555555555 5556
Q ss_pred HHHHHHHHHH
Q 023425 179 ASALWCFHRA 188 (282)
Q Consensus 179 ~~A~~~~~~A 188 (282)
++|+..|++|
T Consensus 75 ~eAi~~l~~~ 84 (84)
T PF12895_consen 75 EEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 6665555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.6e-05 Score=66.87 Aligned_cols=130 Identities=15% Similarity=0.006 Sum_probs=92.3
Q ss_pred chhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC
Q 023425 22 NQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV 101 (282)
Q Consensus 22 ~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~ 101 (282)
+++..-...++|.+|++.|.++|. +.+...+++=+....+...+.++.|++-.+.|+..||.+..+|-.||..|...
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~-l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~-- 162 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIE-LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL-- 162 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc--
Confidence 344444557789999999999997 44444444444444555567799999999999999999999999999999977
Q ss_pred CCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC
Q 023425 102 PGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH 157 (282)
Q Consensus 102 ~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~ 157 (282)
.++++|++.|++|++ +.+.....+|...-..-.. +++...+..-+.-+...|.
T Consensus 163 --gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e-~~~~~~~~~~~d~~~~ig~ 217 (304)
T KOG0553|consen 163 --GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE-PKSSAQASGSFDMAGLIGA 217 (304)
T ss_pred --CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC-CCcccccccchhhhhhccC
Confidence 466999999999985 5677777777655332211 2223444455555555555
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00015 Score=54.76 Aligned_cols=92 Identities=21% Similarity=0.152 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---
Q 023425 87 HARYWLSKLHLKYHVPGACKAMGAALLVDAANMGD-----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L--- 156 (282)
Q Consensus 87 ~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g--- 156 (282)
.+.|+++.++... .+.++|+.+|++|+..|- ..+...||..+..-++. ++|+.+++++... +
T Consensus 2 ~~~~~~A~a~d~~----G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~----deA~~~L~~~~~~~p~~~~ 73 (120)
T PF12688_consen 2 RALYELAWAHDSL----GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRY----DEALALLEEALEEFPDDEL 73 (120)
T ss_pred chHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHCCCccc
Confidence 4566667666644 345777777777776542 34666677777765555 7777777777654 2
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
+......++.++.. .+++++|+.++..++.
T Consensus 74 ~~~l~~f~Al~L~~----~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYN----LGRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 44555556666666 6777777777776654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00055 Score=57.61 Aligned_cols=145 Identities=12% Similarity=0.005 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC--CHHHHH-HHHHHHhcCCCCcCCHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG--DPDAQY-ELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~-~Lg~~y~~g~~~~~d~~~ 144 (282)
.+-|..++++.-.--||++...-.-|..+.-. ..+++|+++|..-++.+ |.-.+- .++.+--.|.. -+
T Consensus 68 ~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~----~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~-----l~ 138 (289)
T KOG3060|consen 68 DDLAQKCINQLRDRFPGSKRVGKLKAMLLEAT----GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN-----LE 138 (289)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh----hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc-----HH
Confidence 56677777776555577777777777777643 46688888888877543 222222 24554444444 36
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 023425 145 AFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAK 220 (282)
Q Consensus 145 A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 220 (282)
|++-+..-.+. ++++|+..|+.+|.. .+++++|..|++.-+=. -++.-+-.||.+++.-.| ..|++.|.+|
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-~eN~~~arky 213 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-AENLELARKY 213 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 77766666665 788888888888888 88888888888886443 346666677777765333 6778888888
Q ss_pred HHHHHH
Q 023425 221 RVSAAK 226 (282)
Q Consensus 221 ~~~a~~ 226 (282)
|.+|++
T Consensus 214 y~~alk 219 (289)
T KOG3060|consen 214 YERALK 219 (289)
T ss_pred HHHHHH
Confidence 888877
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.01 E-value=1e-05 Score=53.99 Aligned_cols=50 Identities=24% Similarity=0.227 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM 119 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~ 119 (282)
+++++|+..|+++++.+|+++.+++.||.++... +++++|+.+|+++++.
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~----g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ----GRYDEALAYYERALEL 60 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Confidence 5599999999999999999999999999999966 5779999999999753
|
|
| >PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway [] | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.6e-06 Score=48.26 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=16.4
Q ss_pred HHHHHHH--HHHhcCC-CCcCCHHHHHHHHHHHHHcC
Q 023425 123 DAQYELG--CRLRVEN-DYVQSDQQAFYYIEKAVDQL 156 (282)
Q Consensus 123 ~A~~~Lg--~~y~~g~-~~~~d~~~A~~~~~kAa~~g 156 (282)
+|++.|| .+|..|. ++++|.++|+.||++|++.|
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 4445555 4444444 34445555555555555444
|
Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.5e-05 Score=59.04 Aligned_cols=82 Identities=15% Similarity=-0.015 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|...|+-.+-.++.+++-+..||-++... +++++|+..|-.|+ ..++|...+..|.+|+. ..+..
T Consensus 51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~----k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~----l~~~~ 122 (165)
T PRK15331 51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK----KQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL----MRKAA 122 (165)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcccCCCCccchHHHHHHH----hCCHH
Confidence 4466666666666666666666666666666533 45566666666664 34566666666666665 33336
Q ss_pred HHHHHHHHHHHc
Q 023425 144 QAFYYIEKAVDQ 155 (282)
Q Consensus 144 ~A~~~~~kAa~~ 155 (282)
.|..+|..+++.
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 666666666553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00028 Score=53.34 Aligned_cols=93 Identities=18% Similarity=0.074 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--C--
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH-----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--G-- 192 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~-----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g-- 192 (282)
|.+.|.+|.++..-+.. ++|+.+|++|...|- ..+.+.+|..|.. .|++++|+.++++++.. +
T Consensus 1 ~~~~~~~A~a~d~~G~~----~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~----LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 1 PRALYELAWAHDSLGRE----EEAIPLYRRALAAGLSGADRRRALIQLASTLRN----LGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred CchHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcc
Confidence 35788899988885555 999999999999752 5678889999999 99999999999999875 2
Q ss_pred -CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 193 -HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 193 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+......++.++.. .++.++|+.++..+..
T Consensus 73 ~~~~l~~f~Al~L~~----~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYN----LGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 44556667777776 6778878777776654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.8e-05 Score=64.33 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=79.3
Q ss_pred CCCCHHHHHHHHHHH-hcCCCCCcCHHHHHHHHHHHHh--CCC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 82 DNSNTHARYWLSKLH-LKYHVPGACKAMGAALLVDAAN--MGD---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~-~~~~~~~~~~~~A~~~~~~Aa~--~g~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.+++....|..+.-+ ... +++++|+..|+..++ +++ +.+++.||.+|+. ..++++|+.+|++.++.
T Consensus 138 ~~~~e~~~Y~~A~~l~~~~----~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 138 QSGDANTDYNAAIALVQDK----SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKN 209 (263)
T ss_pred CCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 345677777777755 322 578999999999985 444 6899999999998 55569999999999975
Q ss_pred -----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 156 -----LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 156 -----g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
..+++++.+|.+|.. .+++++|+..|++.++.-
T Consensus 210 yP~s~~~~dAl~klg~~~~~----~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 210 YPKSPKAADAMFKVGVIMQD----KGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CCCCcchhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHC
Confidence 368999999999988 899999999999988763
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.6e-05 Score=54.02 Aligned_cols=59 Identities=29% Similarity=0.310 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 123 DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----L-----HPGALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 123 ~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g-----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
.++.++|.+|.. ..++++|+.+|++|.+. | .+.++++||.+|.. .+++++|+.+|++|+
T Consensus 6 ~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 345555555555 23335555555555532 1 13445555666555 555666666666554
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=61.51 Aligned_cols=160 Identities=19% Similarity=0.103 Sum_probs=111.2
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHhcCCCCCcCHHHH
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYW-LSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~-Lg~~~~~~~~~~~~~~~A 109 (282)
++.+-|...+.+--..+++..+ +....+.-....+++++|+++|...++-||.|...+-. ++.+...|. + -+|
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~R-V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK----~-l~a 139 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKR-VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK----N-LEA 139 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC----c-HHH
Confidence 4456666655553333433332 33333334455677999999999999888888777664 566666552 2 377
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
++-+..-.+ ++|++|+..|+.+|+. ..++.+|..+|+...-. -++-.+-.+|.+++.-.| ..+..-|.+||
T Consensus 140 Ik~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-~eN~~~arkyy 214 (289)
T KOG3060|consen 140 IKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-AENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence 777766665 5899999999999998 55569999999998766 466677789988776434 77889999999
Q ss_pred HHHHHcCC--HHHHHHHH
Q 023425 186 HRASEKGH--AGAAIAYG 201 (282)
Q Consensus 186 ~~A~~~g~--~~a~~~Lg 201 (282)
.+|++... ..+++.+-
T Consensus 215 ~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 215 ERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHhChHhHHHHHHHH
Confidence 99998754 44444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00018 Score=64.31 Aligned_cols=230 Identities=14% Similarity=0.029 Sum_probs=142.8
Q ss_pred hhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCC
Q 023425 24 HQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPG 103 (282)
Q Consensus 24 ~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~ 103 (282)
+.+.....+|.+|+..+..+++..+.. ...+......+...++++.|...+++.++.+|+.+.++...+.++...
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~---- 130 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL---- 130 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh----
Confidence 444555778999999999988877654 222222222233346699999999999999999999999998887644
Q ss_pred cCHHHHHHHHHHH---------------H---------------------------------------hCCCHHHHHHHH
Q 023425 104 ACKAMGAALLVDA---------------A---------------------------------------NMGDPDAQYELG 129 (282)
Q Consensus 104 ~~~~~A~~~~~~A---------------a---------------------------------------~~g~~~A~~~Lg 129 (282)
.+..+|...|+-. + +..+.+|.+.-|
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg 210 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRG 210 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcc
Confidence 2223333332211 1 112233333334
Q ss_pred HHHhcCCCCcCCHHHHHHHHHHHHHcCC--H------------HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---
Q 023425 130 CRLRVENDYVQSDQQAFYYIEKAVDQLH--P------------GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--- 192 (282)
Q Consensus 130 ~~y~~g~~~~~d~~~A~~~~~kAa~~g~--~------------~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--- 192 (282)
.++.. ..+.++|+..|+++.+.+- . ..+-.-|...+. .+++.+|.++|..|+..+
T Consensus 211 ~~~yy----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 211 LCLYY----NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred ccccc----ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHHHHHHHhhcCCccc
Confidence 44333 4556889999999888731 1 111222333333 788889999999987754
Q ss_pred ---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhch--hccCCCHHHHHHHHHHHHHhc-cHHHHH
Q 023425 193 ---HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLE--SNLMNPVEKAKEQFEVAAQAG-CNLGLR 260 (282)
Q Consensus 193 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g-~~~a~~ 260 (282)
++..+.+.+.+... .++..+|+.-++.|+. .++..-| .+...+.+.|++.|++|.+.. +..-..
T Consensus 283 ~~~naklY~nra~v~~r----Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~ 358 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIR----LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRR 358 (486)
T ss_pred cchhHHHHHHhHhhhcc----cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHH
Confidence 24456666666666 6777778877777776 2333333 346678899999999999876 333444
Q ss_pred HHHHHHHHHh
Q 023425 261 WLQRIEEEEK 270 (282)
Q Consensus 261 ~l~~l~~~~~ 270 (282)
.|.+....++
T Consensus 359 ~l~~A~~aLk 368 (486)
T KOG0550|consen 359 TLREAQLALK 368 (486)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.8e-05 Score=53.18 Aligned_cols=61 Identities=20% Similarity=0.110 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----C-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----G-----HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.++.+||.+|.. .+++++|+.+|++|++. | .+.++++||.+|.. .+++++|..+++++.+
T Consensus 5 a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 4578899999999 99999999999999763 3 25579999999998 7888888887777654
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00017 Score=57.09 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPG 159 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~ 159 (282)
+.-+..|..|.-++.. +++++|...|+-.+ +..+++-+..||.++.. .+++++|+..|..|+.. ++|.
T Consensus 35 ~~le~iY~~Ay~~y~~----Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~----~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQ----GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL----KKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred HHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcccCCCC
Confidence 3445566666655544 46799999999887 55678888888899888 66679999999999876 7899
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 160 ALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 160 A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
..+.+|.||+. .++...|+.+|+.++++-.
T Consensus 107 p~f~agqC~l~----l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 107 PVFFTGQCQLL----MRKAAKARQCFELVNERTE 136 (165)
T ss_pred ccchHHHHHHH----hCCHHHHHHHHHHHHhCcc
Confidence 99999999999 9999999999999998644
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00045 Score=65.31 Aligned_cols=137 Identities=12% Similarity=-0.053 Sum_probs=99.7
Q ss_pred cCCCCHHHHHH--HHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCc----CCHHHHHHHHHHH
Q 023425 81 ADNSNTHARYW--LSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYV----QSDQQAFYYIEKA 152 (282)
Q Consensus 81 ~~~g~~~a~~~--Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~----~d~~~A~~~~~kA 152 (282)
..|.+++|+-. -|.-|... ....+...|+.+|++|+ +++++.|+-.|+.+|....... .+...+.....++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~-~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNS-GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34566666543 34444433 23466889999999998 4789999998888775432221 1245667777775
Q ss_pred HHc----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 153 VDQ----LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 153 a~~----g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
... ..+.++..+|.+... .+++++|...|++|++.. +..++..+|.++.. .++.++|+.+|++|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFN 481 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 553 456888889988887 799999999999998865 57789999999998 7888887777777765
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00024 Score=55.53 Aligned_cols=134 Identities=21% Similarity=0.070 Sum_probs=90.9
Q ss_pred hhhhhhhhhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhHH--HHHHHHHhhcCCCchhhHHHHHHHHHHHHH
Q 023425 3 RQISKASTLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKEV--DRVIDYCELNDRRLIPLLKTAKENFELALE 80 (282)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 80 (282)
.+...|+.++...+..+..+. ...+.+.+.+-+...+.. .....+.........+++++|...|+.+++
T Consensus 6 ~~~~~a~~~y~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 6 QQAEQASALYEQALQALQAGD---------PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 456677777777776664333 344444444433333322 223344444445556889999999999997
Q ss_pred cCCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH
Q 023425 81 ADNSN---THARYWLSKLHLKYHVPGACKAMGAALLVDAANM-GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAV 153 (282)
Q Consensus 81 ~~~g~---~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa 153 (282)
..|+. +.+.+.|+.++... .++++|+..+...... -.+.+...+|.+|...+. .++|+..|++|+
T Consensus 77 ~~~d~~l~~~a~l~LA~~~~~~----~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~----~~~A~~~y~~Al 145 (145)
T PF09976_consen 77 NAPDPELKPLARLRLARILLQQ----GQYDEALATLQQIPDEAFKALAAELLGDIYLAQGD----YDEARAAYQKAL 145 (145)
T ss_pred hCCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCC----HHHHHHHHHHhC
Confidence 65444 45888899999866 5779999999774432 356778889999999444 499999999873
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00015 Score=69.08 Aligned_cols=117 Identities=17% Similarity=0.066 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
++.++|.-+..+|-.+.|-.+..++..|.++... +...+|...|.-|. +++++.++..||.++.+++. +...
T Consensus 664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~----~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~--~~la 737 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVK----GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS--PRLA 737 (799)
T ss_pred CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHH----HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC--cchH
Confidence 4467788888888888888889999999998854 56689999999885 78899999999999988763 2234
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
.+...+..|++. .+++||+.||.++.. .||.++|..+|+-|++..
T Consensus 738 ~~~~~L~dalr~dp~n~eaW~~LG~v~k~----~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 738 EKRSLLSDALRLDPLNHEAWYYLGEVFKK----LGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccchHHHHHHHHHHHhhc
Confidence 444488888887 489999999999998 899999999999988753
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00042 Score=59.78 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHH-hcCCCCcCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-
Q 023425 119 MGDPDAQYELGCRL-RVENDYVQSDQQAFYYIEKAVDQ--LH---PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK- 191 (282)
Q Consensus 119 ~g~~~A~~~Lg~~y-~~g~~~~~d~~~A~~~~~kAa~~--g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~- 191 (282)
.++..+.|..+.-+ .. .+++++|+..|++.++. ++ +.+++.||.+|+. .+++++|+.+|++.++.
T Consensus 139 ~~~e~~~Y~~A~~l~~~----~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 139 SGDANTDYNAAIALVQD----KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKNY 210 (263)
T ss_pred CCCHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHC
Confidence 34667777777654 44 34569999999999986 33 6899999999999 99999999999999864
Q ss_pred ----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 192 ----GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 192 ----g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
..+++++.+|.+|.. .++.++|...|++.+.
T Consensus 211 P~s~~~~dAl~klg~~~~~----~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQD----KGDTAKAKAVYQQVIK 245 (263)
T ss_pred CCCcchhHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 258899999999987 7899999999998876
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0015 Score=55.76 Aligned_cols=133 Identities=12% Similarity=-0.030 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHhcCCCCCcCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhcCC-
Q 023425 66 PLLKTAKENFELALEADNSNTHAR---YWLSKLHLKYHVPGACKAMGAALLVDAANM-----GDPDAQYELGCRLRVEN- 136 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~---~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~-----g~~~A~~~Lg~~y~~g~- 136 (282)
+++++|+..|++.++..|+.+.+. ++||.+|... .+++.|+.+|++.++. ..+.+++.+|.++...+
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~----~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN----ADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD 121 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence 459999999999999999998876 8999999976 6889999999999863 35789999998753221
Q ss_pred ----------CCcCC---HHHHHHHHHHHHHc--CC---HHHH--------------HHHHHHHhcCCCCccCHHHHHHH
Q 023425 137 ----------DYVQS---DQQAFYYIEKAVDQ--LH---PGAL--------------YLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 137 ----------~~~~d---~~~A~~~~~kAa~~--g~---~~A~--------------~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
....| ..+|+.-|++.++. +. ++|. +.+|..|.. .+++.-|+.-
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~----~~~y~AA~~r 197 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK----RGAYVAVVNR 197 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCchHHHHHH
Confidence 11223 34677888888775 21 2332 334555666 6666667776
Q ss_pred HHHHHHc-----CCHHHHHHHHHHHHc
Q 023425 185 FHRASEK-----GHAGAAIAYGSLLLR 206 (282)
Q Consensus 185 ~~~A~~~-----g~~~a~~~Lg~~y~~ 206 (282)
|+..++. -.++|.+.|...|..
T Consensus 198 ~~~v~~~Yp~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 198 VEQMLRDYPDTQATRDALPLMENAYRQ 224 (243)
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 7666664 236677777777765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0039 Score=58.88 Aligned_cols=187 Identities=13% Similarity=0.003 Sum_probs=120.4
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC-CCcCH--
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV-PGACK-- 106 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~-~~~~~-- 106 (282)
.|++++|++.+......+.+...+. -..+..+...++.++|...|+..++.+|++..-+..|..+.-.... ...+.
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk~~~~-E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~ 95 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDKLAVL-EKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEK 95 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHH
Confidence 4789999999887655444321111 1111222233559999999999999999998877777776621111 11111
Q ss_pred --------------------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 107 --------------------------------AMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 107 --------------------------------~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
..+..+....+..|-|....+|-.+|...... .-...-+.-|....+
T Consensus 96 ~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~-~~i~~l~~~~~~~l~ 174 (517)
T PF12569_consen 96 LLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKA-AIIESLVEEYVNSLE 174 (517)
T ss_pred HHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHH-HHHHHHHHHHHHhhc
Confidence 34444555556677777777777776642111 001111112222221
Q ss_pred c------------CCH----HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHH
Q 023425 155 Q------------LHP----GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTK 216 (282)
Q Consensus 155 ~------------g~~----~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~ 216 (282)
. ..| -+++.|+.+|.. .+++++|+++..+|++.. .++-++.-|.+|.+ .+++.+
T Consensus 175 ~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~----~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh----~G~~~~ 246 (517)
T PF12569_consen 175 SNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY----LGDYEKALEYIDKAIEHTPTLVELYMTKARILKH----AGDLKE 246 (517)
T ss_pred ccCCCCCccccccCCchHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----CCCHHH
Confidence 1 112 245778888888 899999999999999975 48889999999999 899999
Q ss_pred HHHHHHHHHH
Q 023425 217 LNAKRVSAAK 226 (282)
Q Consensus 217 A~~~~~~a~~ 226 (282)
|..+++.|-.
T Consensus 247 Aa~~~~~Ar~ 256 (517)
T PF12569_consen 247 AAEAMDEARE 256 (517)
T ss_pred HHHHHHHHHh
Confidence 9999998865
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.5e-05 Score=50.41 Aligned_cols=57 Identities=30% Similarity=0.336 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 127 ELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 127 ~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.+|..+.. ..++++|+..|+++++. +++.+++.+|.++.. .+++++|+.+|+++++.
T Consensus 2 ~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 34555555 33336666666666655 456666666666665 56666666666666543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.3e-05 Score=50.17 Aligned_cols=62 Identities=26% Similarity=0.184 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGC 130 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~ 130 (282)
.+++++|+..|+++++.+|+++++.+.|+.+|... +++++|..++++.... .++..+.-++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ----GQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT----T-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 36799999999999999999999999999999977 5779999999999854 44565555544
|
... |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0078 Score=57.09 Aligned_cols=76 Identities=12% Similarity=0.028 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 143 QQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 143 ~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
+.|..+|.+|-.. |...-+..-..+-.. .++.++|+.+++.+++. ..+.-+..+|.++.+ .++++.|..
T Consensus 635 eraR~llakar~~sgTeRv~mKs~~~er~----ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~----~~~ie~aR~ 706 (913)
T KOG0495|consen 635 ERARDLLAKARSISGTERVWMKSANLERY----LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ----MENIEMARE 706 (913)
T ss_pred HHHHHHHHHHhccCCcchhhHHHhHHHHH----hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH----HHHHHHHHH
Confidence 4455555444332 333333333333222 34445555555544443 234444445555544 444444444
Q ss_pred HHHHHHH
Q 023425 220 KRVSAAK 226 (282)
Q Consensus 220 ~~~~a~~ 226 (282)
.|.....
T Consensus 707 aY~~G~k 713 (913)
T KOG0495|consen 707 AYLQGTK 713 (913)
T ss_pred HHHhccc
Confidence 4444433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0017 Score=62.85 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH----------------------cCCHHHHHHHHHHHhcCCCCccCHHHH
Q 023425 124 AQYELGCRLRVENDYVQSDQQAFYYIEKAVD----------------------QLHPGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 124 A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~----------------------~g~~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
.+++.+..+.. ..|++.|++||+|+-. ..++.-+-++|..+.. .++.+-|
T Consensus 860 Tyy~yA~~Lea----r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES----~GemdaA 931 (1416)
T KOG3617|consen 860 TYYNYAKYLEA----RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES----VGEMDAA 931 (1416)
T ss_pred hHHHHHHHHHh----hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc----ccchHHH
Confidence 45555555555 4556888888888632 1345555666776666 7888999
Q ss_pred HHHHHHHHH-----------------------cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 182 LWCFHRASE-----------------------KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 182 ~~~~~~A~~-----------------------~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.+|..|-+ .|+..|+|.||.+|+. .++..+|+++|.+|-.
T Consensus 932 l~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 932 LSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN----DGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh----hHHHHHHHHHHHHHHH
Confidence 988887632 4788899999999999 8999999999999854
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00015 Score=58.05 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCC------CcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCc
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVP------GACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~------~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
|+.|.+.++.....+|.++++.++.|..+...-.. ..-+++|+.-|+.|+ ++...+|+++||+.|..-....
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 78899999999999999999999999987744111 122466777777775 6788999999999987644434
Q ss_pred CCHHHHHHHH
Q 023425 140 QSDQQAFYYI 149 (282)
Q Consensus 140 ~d~~~A~~~~ 149 (282)
+|..+|-.+|
T Consensus 87 ~d~~~A~~~F 96 (186)
T PF06552_consen 87 PDTAEAEEYF 96 (186)
T ss_dssp --HHHHHHHH
T ss_pred CChHHHHHHH
Confidence 4443443333
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00011 Score=66.90 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=56.9
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHH---HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 81 ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDA---QYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 81 ~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A---~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.+|++++++++||..|... .++++|+.+|++|++ ++++++ ++|+|.+|...+.. ++|+.++++|++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~l----GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~----dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK----GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG----KKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHh
Confidence 7899999999999998866 577999999999875 566654 89999999885555 9999999999987
Q ss_pred CCH
Q 023425 156 LHP 158 (282)
Q Consensus 156 g~~ 158 (282)
+++
T Consensus 142 sn~ 144 (453)
T PLN03098 142 YNL 144 (453)
T ss_pred cch
Confidence 433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00014 Score=66.25 Aligned_cols=68 Identities=19% Similarity=-0.067 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCC
Q 023425 50 VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHA---RYWLSKLHLKYHVPGACKAMGAALLVDAANMGD 121 (282)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a---~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~ 121 (282)
......++.+..+...+++++|+..|++|++++|+++++ +|++|.+|... .+.++|+.+|++|++.++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L----Gr~dEAla~LrrALelsn 143 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR----EEGKKAADCLRTALRDYN 143 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcc
Confidence 345566677777777788888888888888888888855 88888888865 456888888888887643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0017 Score=65.38 Aligned_cols=169 Identities=10% Similarity=-0.025 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 67 LLKTAKENFELALEAD-NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~-~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++.|.+.+....+.. +.+...+..|-.+|... .+.++|.+.|.+..++ +...+..+...|...+.. ++|
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~----g~~~~A~~vf~~m~~~-d~~s~n~li~~~~~~g~~----~~A 373 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL----GSWGEAEKVFSRMETK-DAVSWTAMISGYEKNGLP----DKA 373 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc----CCHHHHHHHHhhCCCC-CeeeHHHHHHHHHhCCCH----HHH
Confidence 3444444444443211 12344444455555433 3446666666554332 344555555555553333 666
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 146 FYYIEKAVDQLH---PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG---HAGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 146 ~~~~~kAa~~g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
+..|++..+.|. ...+..+=..+.. .+++++|.+.+..+.+.| +...+..|-.+|.+ .+++++|..
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k----~g~~~~A~~ 445 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACAC----LGDLDVGVKLHELAERKGLISYVVVANALIEMYSK----CKCIDKALE 445 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhc----cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH----cCCHHHHHH
Confidence 666666555431 2222222222333 566777777777776665 34456666677766 677778877
Q ss_pred HHHHHHH---HHchhc--hhccCCCHHHHHHHHHHHHH
Q 023425 220 KRVSAAK---KARANL--ESNLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 220 ~~~~a~~---~a~~~l--g~~~~~~~~~A~~~~~~Aa~ 252 (282)
.|++-.+ ..|..+ |+...++.++|+..|++...
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7776543 123332 34567778888888888764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0016 Score=63.08 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 155 QLHPGALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 155 ~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
.|+.-|+|.||.+|.+ .+++-+|+++|.+|-
T Consensus 964 sgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 964 SGDKAACYHLARMYEN----DGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cccHHHHHHHHHHhhh----hHHHHHHHHHHHHHH
Confidence 4899999999999999 999999999999983
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0038 Score=57.09 Aligned_cols=147 Identities=15% Similarity=-0.013 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 023425 83 NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHP 158 (282)
Q Consensus 83 ~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~ 158 (282)
|+.+.++|..+..+... ..++.|...+..-+ .++|+..+-..+.++..-+.. ++|.+.++++... +.+
T Consensus 303 ~~~~aa~YG~A~~~~~~----~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~----~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 303 RGGLAAQYGRALQTYLA----GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKA----KEAIERLKKALALDPNSP 374 (484)
T ss_pred ccchHHHHHHHHHHHHh----cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhcCCCcc
Confidence 56677777777766644 34466666666644 467777777777777775555 7777777777776 456
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhcc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNL 236 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~ 236 (282)
--..++|.+|.. .+++.+|+..+...... .++..+..|+..|.. .++..++...+... ...
T Consensus 375 ~l~~~~a~all~----~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~----~g~~~~a~~A~AE~---------~~~ 437 (484)
T COG4783 375 LLQLNLAQALLK----GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE----LGNRAEALLARAEG---------YAL 437 (484)
T ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH----hCchHHHHHHHHHH---------HHh
Confidence 666777777777 56677777777776554 467777777777776 45544443333221 234
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 023425 237 MNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 237 ~~~~~~A~~~~~~Aa~~g 254 (282)
.++.++|+..+.+|.+..
T Consensus 438 ~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 438 AGRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 567778888888887765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0073 Score=55.31 Aligned_cols=147 Identities=14% Similarity=0.061 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CH
Q 023425 119 MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HA 194 (282)
Q Consensus 119 ~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~ 194 (282)
.+.+.++|-.+..++. ..+++.|+..+..-+.. +++..+...+.++.. .++.++|.+.+++++... .+
T Consensus 303 ~~~~aa~YG~A~~~~~----~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~----~nk~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 303 RGGLAAQYGRALQTYL----AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE----ANKAKEAIERLKKALALDPNSP 374 (484)
T ss_pred ccchHHHHHHHHHHHH----hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcc
Confidence 4455555555555544 22225555555554433 555555555555555 555555555555555542 23
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhch--hccCCCHHHHHHHHHHHHH-hc-cHHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLE--SNLMNPVEKAKEQFEVAAQ-AG-CNLGLRWLQR 264 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg--~~~~~~~~~A~~~~~~Aa~-~g-~~~a~~~l~~ 264 (282)
--..++|.+|+. .+++.+|+..++.... .+|..|+ +...+|..+|..-+..... .| ...|...+..
T Consensus 375 ~l~~~~a~all~----~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 375 LLQLNLAQALLK----GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445555555555 2333455555555543 2444444 3344444444444333322 22 3334444444
Q ss_pred HHHHHhhcCCccc
Q 023425 265 IEEEEKRLLTESS 277 (282)
Q Consensus 265 l~~~~~~~~~~~~ 277 (282)
..+..+.-..+|.
T Consensus 451 A~~~~~~~~~~~a 463 (484)
T COG4783 451 ASQQVKLGFPDWA 463 (484)
T ss_pred HHHhccCCcHHHH
Confidence 4443333333333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.2e-05 Score=43.19 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=27.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Q 023425 74 NFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGA 110 (282)
Q Consensus 74 ~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~ 110 (282)
.|++|++.+|+++.++++||.+|... ++.++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~----g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQ----GDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHC----cCHHhhc
Confidence 38899999999999999999999966 3556664
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0035 Score=63.22 Aligned_cols=199 Identities=12% Similarity=-0.082 Sum_probs=103.3
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.++.++|.+++....+.........+-.....+...+++++|.+.|++.. ..+..+|..+-..|... .+.++|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~vs~~~mi~~~~~~----g~~~eA 474 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP---EKDVISWTSIIAGLRLN----NRCFEA 474 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeHHHHHHHHHHC----CCHHHH
Confidence 56677777776665543222222222222222333355777777776652 23455566555555543 344666
Q ss_pred HHHHHHHHhCCCHH---------HH----------------------------HHHHHHHhcCCCCcCCHHHHHHHHHHH
Q 023425 110 AALLVDAANMGDPD---------AQ----------------------------YELGCRLRVENDYVQSDQQAFYYIEKA 152 (282)
Q Consensus 110 ~~~~~~Aa~~g~~~---------A~----------------------------~~Lg~~y~~g~~~~~d~~~A~~~~~kA 152 (282)
+..|++..+.-.|+ |+ ..|-.+|...+ +.++|...|...
T Consensus 475 ~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G----~~~~A~~~f~~~ 550 (857)
T PLN03077 475 LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG----RMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC----CHHHHHHHHHhc
Confidence 66666654311111 11 11223333322 336777777665
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH--
Q 023425 153 VDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG---HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-- 227 (282)
Q Consensus 153 a~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 227 (282)
..+..++..|...|.. .++.++|+..|++..+.| +...+..+-..+.+ .+.+++|..+|+.....
T Consensus 551 --~~d~~s~n~lI~~~~~----~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 551 --EKDVVSWNILLTGYVA----HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR----SGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred --CCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh----cChHHHHHHHHHHHHHHhC
Confidence 4566667777666666 677777777777766654 23333333333443 45667777777666531
Q ss_pred ------Hchhch--hccCCCHHHHHHHHHH
Q 023425 228 ------ARANLE--SNLMNPVEKAKEQFEV 249 (282)
Q Consensus 228 ------a~~~lg--~~~~~~~~~A~~~~~~ 249 (282)
.+..+. .+..++.++|..++++
T Consensus 621 i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 111222 3455666666666665
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0015 Score=56.43 Aligned_cols=77 Identities=9% Similarity=0.015 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 023425 144 QAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKR 221 (282)
Q Consensus 144 ~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 221 (282)
-+....++-...|.++...+.|.+.+. .++++.|++-|+.|.+-+ .+...|+++.+++. .+++..|.++.
T Consensus 130 g~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~----~~qyasALk~i 201 (459)
T KOG4340|consen 130 GSRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS----SRQYASALKHI 201 (459)
T ss_pred chHHHHHhccCCCccchhccchheeec----cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh----hhhHHHHHHHH
Confidence 333444444445778888899988888 899999999999999864 47789999999999 89999999999
Q ss_pred HHHHHHH
Q 023425 222 VSAAKKA 228 (282)
Q Consensus 222 ~~a~~~a 228 (282)
..-++++
T Consensus 202 SEIieRG 208 (459)
T KOG4340|consen 202 SEIIERG 208 (459)
T ss_pred HHHHHhh
Confidence 9988854
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.039 Score=49.40 Aligned_cols=239 Identities=11% Similarity=-0.032 Sum_probs=128.9
Q ss_pred hhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHH--HHhcCC
Q 023425 23 QHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSK--LHLKYH 100 (282)
Q Consensus 23 ~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~--~~~~~~ 100 (282)
.......+|++.+|...+.+..+ -.+.....+......-+..+|.+.|-.|..++.+. ++++.-...|.. +....
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae-~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~- 166 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAE-HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNR- 166 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhh-cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhC-
Confidence 34444557777777777766433 22333334444444555567788888888888764 244444444433 33333
Q ss_pred CCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCC--------------cCCHHHHHHHHHHHHH----------
Q 023425 101 VPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDY--------------VQSDQQAFYYIEKAVD---------- 154 (282)
Q Consensus 101 ~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~--------------~~d~~~A~~~~~kAa~---------- 154 (282)
.|++.|..-..++.+. .++...--.-.+|...+.. --+.+++..+=.+|.+
T Consensus 167 ---~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 167 ---RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred ---CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 3456666666665543 2444443333444331110 0001122221111111
Q ss_pred ----------------cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 155 ----------------QLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-HAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 155 ----------------~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
..+|.-...++.-+.. .++.+.|.++.+.+.+.+ ++. ...+--+..- .+-.+-...+
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~-~d~~~l~k~~ 317 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRP-GDPEPLIKAA 317 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChh-HHHHHhhcCC-CCchHHHHHH
Confidence 1334444445555555 889999999999998875 455 2222222211 1111222234
Q ss_pred HHHHHHHHH--HHchhchhc--cCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcC
Q 023425 218 NAKRVSAAK--KARANLESN--LMNPVEKAKEQFEVAAQAG-CNLGLRWLQRIEEEEKRLL 273 (282)
Q Consensus 218 ~~~~~~a~~--~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g-~~~a~~~l~~l~~~~~~~~ 273 (282)
.+|.++..+ ..++.||.. ..+...+|..+|+.|+..+ +.....+++.......++.
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChH
Confidence 455555544 356678843 6778999999999999988 5567777888777654443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.019 Score=47.58 Aligned_cols=191 Identities=14% Similarity=0.034 Sum_probs=120.0
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHH
Q 023425 53 VIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGC 130 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~ 130 (282)
...+..|..+-..+-..-|..-|.+++.+.|.-|++.+.||..+... .+++.|.+.|....+ +++--|..|-|.
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a----~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA----GNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhc----ccchHHHHHhhhHhccCCcchHHHhccce
Confidence 34455555555556677888889999999999999999999998865 677999999999875 567788889998
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcCCC
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH-AGAAIAYGSLLLRGVQ 209 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~-~~a~~~Lg~~y~~g~g 209 (282)
.+..|++. +.|.+=+.+--..+-.+-...|- +|.. ..+-|+.+|..-+.+=++.-+ ..--.+|-.+|.....
T Consensus 142 ~~YY~gR~----~LAq~d~~~fYQ~D~~DPfR~LW-LYl~--E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS 214 (297)
T COG4785 142 ALYYGGRY----KLAQDDLLAFYQDDPNDPFRSLW-LYLN--EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKIS 214 (297)
T ss_pred eeeecCch----HhhHHHHHHHHhcCCCChHHHHH-HHHH--HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhcc
Confidence 88888887 66666665554442222222222 2222 114667777766555444433 2222333334433111
Q ss_pred CcccHHHHHH------HHHHHHHHHchhch--hccCCCHHHHHHHHHHHHHhc
Q 023425 210 VPECLTKLNA------KRVSAAKKARANLE--SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 210 ~~~~~~~A~~------~~~~a~~~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g 254 (282)
++.-.+.+.. -+-.-....++.|| ....++.++|...|+.|+.+.
T Consensus 215 ~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 215 EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1111111111 11111225777888 457889999999999999876
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.017 Score=48.25 Aligned_cols=149 Identities=14% Similarity=0.091 Sum_probs=94.1
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHhcCCCCCc
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALE------ADNSNTHARYWLSKLHLKYHVPGA 104 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------~~~g~~~a~~~Lg~~~~~~~~~~~ 104 (282)
+.+++|.+++.++.+.. ...+++..|-..|-+|++ ...+-+..+...+.+|...
T Consensus 28 ~k~eeAadl~~~Aan~y---------------klaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~----- 87 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMY---------------KLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV----- 87 (288)
T ss_pred cchHHHHHHHHHHHHHH---------------HHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-----
Confidence 46899999998875421 112335555555555554 2223345566677777654
Q ss_pred CHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC------HHHHHHHHHHH
Q 023425 105 CKAMGAALLVDAAN----MGD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH------PGALYLLGTVY 168 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~------~~A~~~Lg~~y 168 (282)
+..+|+.++.+|++ .|. +.-+..+|.+|... .+|+++|+.+|++|++- |. -.++...+..-
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd---l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD---LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 67999999999985 443 22355678888763 47789999999999984 21 22333334333
Q ss_pred hcCCCCccCHHHHHHHHHHHHHc--CCHH-------HHHHHHHHHHc
Q 023425 169 LTGDCVKKDIASALWCFHRASEK--GHAG-------AAIAYGSLLLR 206 (282)
Q Consensus 169 ~~g~g~~~d~~~A~~~~~~A~~~--g~~~-------a~~~Lg~~y~~ 206 (282)
-. .+.+.+|+..|++.+.. +++. =.+.-|.|++.
T Consensus 165 a~----leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 165 AQ----LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HH----HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 33 67799999999987553 3322 24455677765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.058 Score=51.20 Aligned_cols=156 Identities=12% Similarity=-0.034 Sum_probs=103.3
Q ss_pred hhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHH
Q 023425 10 TLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHAR 89 (282)
Q Consensus 10 ~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~ 89 (282)
+++--++-+.+..| |++.+.+..+-++.. ..++...-..|-.....++-++|..+-+.++..++.++..|
T Consensus 9 ~lF~~~lk~yE~kQ---------YkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCw 78 (700)
T KOG1156|consen 9 ALFRRALKCYETKQ---------YKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCW 78 (700)
T ss_pred HHHHHHHHHHHHHH---------HHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhH
Confidence 44444455444444 777777777666633 33344444555556667889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 023425 90 YWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLG 165 (282)
Q Consensus 90 ~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg 165 (282)
.-+|.++... +++++|++||+.|. ++++...+..|+.+-.+ ..|++-...--.+-.+. ++-..+..++
T Consensus 79 Hv~gl~~R~d----K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q----mRd~~~~~~tr~~LLql~~~~ra~w~~~A 150 (700)
T KOG1156|consen 79 HVLGLLQRSD----KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ----MRDYEGYLETRNQLLQLRPSQRASWIGFA 150 (700)
T ss_pred HHHHHHHhhh----hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999865 78899999999997 56788999999887666 33334333333333332 3333444444
Q ss_pred HHHhcCCCCccCHHHHHHHHHH
Q 023425 166 TVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 166 ~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
..+.- .+++..|....+.
T Consensus 151 vs~~L----~g~y~~A~~il~e 168 (700)
T KOG1156|consen 151 VAQHL----LGEYKMALEILEE 168 (700)
T ss_pred HHHHH----HHHHHHHHHHHHH
Confidence 44444 5667777655443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.012 Score=59.63 Aligned_cols=213 Identities=9% Similarity=-0.093 Sum_probs=134.2
Q ss_pred cccchHHHHHHHHHHhhhhhHHH----HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCC--CC----HHHHHHHHHHHhc
Q 023425 29 LHSRNKKAMELIAKGWSALKEVD----RVIDYCELNDRRLIPLLKTAKENFELALEADN--SN----THARYWLSKLHLK 98 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--g~----~~a~~~Lg~~~~~ 98 (282)
..+++++|..++..++....... .......+......+++++|..+++++++... ++ ..+...+|.++..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 46788999998888765322111 11222233334445779999999999875311 11 2355667777765
Q ss_pred CCCCCcCHHHHHHHHHHHHhC----CC------HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C---CHHHH
Q 023425 99 YHVPGACKAMGAALLVDAANM----GD------PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----L---HPGAL 161 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~~----g~------~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g---~~~A~ 161 (282)
. .+.+.|..++.++.+. +. ......+|.++...++. ++|..++.++... + .+.++
T Consensus 544 ~----G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~----~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 544 Q----GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL----DEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred C----CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH----HHHHHHHHHhHHhhhccCchHHHHHH
Confidence 4 5679999998888642 21 22345677777764444 8999888888663 1 24555
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC-HHH----------------------------------------
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEK----GH-AGA---------------------------------------- 196 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~-~~a---------------------------------------- 196 (282)
..+|.++.. .++++.|..++.++... +. ...
T Consensus 616 ~~la~~~~~----~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 616 AMLAKISLA----RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 667778777 78888888888877432 11 000
Q ss_pred --HHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------------Hchhch--hccCCCHHHHHHHHHHHHHhccHH
Q 023425 197 --AIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------------ARANLE--SNLMNPVEKAKEQFEVAAQAGCNL 257 (282)
Q Consensus 197 --~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------a~~~lg--~~~~~~~~~A~~~~~~Aa~~g~~~ 257 (282)
...++.++.. .+++++|...+.++... ++..+| ....++.++|..++.+|.+...+.
T Consensus 692 ~~~~~~a~~~~~----~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 692 GQWRNIARAQIL----LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 1233334433 46678888888888762 222333 337789999999999999877443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0061 Score=52.68 Aligned_cols=107 Identities=16% Similarity=0.008 Sum_probs=85.0
Q ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 107 AMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 107 ~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
+.-+.-++.-+ +++|++.+..||.+|...++. ..|..-|.+|.+. .+++.+..+|.++....| ..+..++.
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~----~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~~ta~a~ 213 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRA----SDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcch----hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CcccHHHH
Confidence 44444444443 679999999999999996665 9999999999998 689999999988776554 77888999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 023425 183 WCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRV 222 (282)
Q Consensus 183 ~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 222 (282)
..|++++.. .++.+.+.||.-++. ++++.+|....+
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe----~g~~~~A~~~Wq 251 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFE----QGDYAEAAAAWQ 251 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHH
Confidence 999999876 478899999999998 777765444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0039 Score=56.01 Aligned_cols=154 Identities=11% Similarity=-0.059 Sum_probs=103.3
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH--H----hcCC--C
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKL--H----LKYH--V 101 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~--~----~~~~--~ 101 (282)
.+++++|+..-..-+. +........+..|.-+.-..+.++|+.+|++++.++|.+.++.-.--.. + ..|+ .
T Consensus 182 ~~~~~~a~~ea~~ilk-ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f 260 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILK-LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF 260 (486)
T ss_pred cccchhHHHHHHHHHh-cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh
Confidence 4556666543322222 3333344444555556666789999999999999988887754321111 1 1111 1
Q ss_pred CCcCHHHHHHHHHHHHhCC------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCC
Q 023425 102 PGACKAMGAALLVDAANMG------DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLTGDC 173 (282)
Q Consensus 102 ~~~~~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g 173 (282)
....+.+|.+.|..|+..+ ++.-+.+.+.+...-++. .+|+.--..|+..+ ...|+..-|.|++.
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl----~eaisdc~~Al~iD~syikall~ra~c~l~--- 333 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL----REAISDCNEALKIDSSYIKALLRRANCHLA--- 333 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc----hhhhhhhhhhhhcCHHHHHHHHHHHHHHHH---
Confidence 2356789999999998532 344566777777775555 88888888888874 67888889999988
Q ss_pred CccCHHHHHHHHHHHHHcC
Q 023425 174 VKKDIASALWCFHRASEKG 192 (282)
Q Consensus 174 ~~~d~~~A~~~~~~A~~~g 192 (282)
.++++.|++.|++|.+..
T Consensus 334 -le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 334 -LEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred -HHHHHHHHHHHHHHHhhc
Confidence 889999999999998764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0049 Score=56.19 Aligned_cols=108 Identities=20% Similarity=0.158 Sum_probs=84.7
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCC
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d 141 (282)
..+.++.|+..|++..+. +|++...|+.++... .+..+|++.+.++++ +.+.+.+...+..+... ++
T Consensus 181 ~t~~~~~ai~lle~L~~~---~pev~~~LA~v~l~~----~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k----~~ 249 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRER---DPEVAVLLARVYLLM----NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK----KK 249 (395)
T ss_pred hcccHHHHHHHHHHHHhc---CCcHHHHHHHHHHhc----CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CC
Confidence 346688999999998654 466788888888754 355888999999985 34677777788888874 44
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 142 DQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
++.|+...++|.+. .+..+++.|+.+|.. .+|++.|+..+.
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~----~~d~e~ALlaLN 292 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQ----LGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----cCCHHHHHHHHh
Confidence 49999999999887 678889999999998 889998886555
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0014 Score=44.48 Aligned_cols=60 Identities=22% Similarity=0.123 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYEL 128 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~L 128 (282)
.+++++|+++++++++.+|.++..++.+|.++... +++.+|+..|.++++. +++.+....
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQL----GRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh----ccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35699999999999999999999999999999976 5779999999999854 455554443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0057 Score=52.18 Aligned_cols=91 Identities=20% Similarity=0.133 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----CCH
Q 023425 89 RYWLSKLHLKYHVPGACKAMGAALLVDAANMG-----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-----LHP 158 (282)
Q Consensus 89 ~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-----g~~ 158 (282)
.|+.+.-+... .++..|..-|..-++.. -++|+|+||.+++. ..|++.|...|..+++. .-|
T Consensus 144 ~Y~~A~~~~ks----gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLYKS----GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCCh
Confidence 34444444432 34566666666665532 35666666666666 33336666666666664 245
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
++++.||.+... .++.++|+..|++.++.
T Consensus 216 dallKlg~~~~~----l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 216 DALLKLGVSLGR----LGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Confidence 666666666666 66666666666666554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.098 Score=46.34 Aligned_cols=161 Identities=15% Similarity=-0.004 Sum_probs=93.7
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHH
Q 023425 54 IDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCR 131 (282)
Q Consensus 54 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~ 131 (282)
..+..|......+.+..|+..|..|++.+|++-.|.|.-+..|.--+.. .-|+.=+.+.++ +++..|-..-|.+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks----k~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS----KAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC----ccchhhHHHHHhcCccHHHHHHHhchh
Confidence 3444445555556688999999999999999989999888888754322 445555666553 4566666666777
Q ss_pred HhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcC--------CCCccCHHHHHHHHHHHHHcC--CHHH
Q 023425 132 LRVENDYVQSDQQAFYYIEKAVDQL-----HPGALYLLGTVYLTG--------DCVKKDIASALWCFHRASEKG--HAGA 196 (282)
Q Consensus 132 y~~g~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~g--------~g~~~d~~~A~~~~~~A~~~g--~~~a 196 (282)
++..+.. ++|..=|.+.++.. ..+++..|+.+-..- ....+|+..|+++..+.++-. +++-
T Consensus 116 llK~Gel----e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 116 LLKQGEL----EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hhhcccH----HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 7665554 66666666666542 233433333221100 012456666666666655543 2333
Q ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 197 AIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 197 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+-.-+.||.. ...+.+|++=.+.+..
T Consensus 192 ~~~Rakc~i~----~~e~k~AI~Dlk~ask 217 (504)
T KOG0624|consen 192 RQARAKCYIA----EGEPKKAIHDLKQASK 217 (504)
T ss_pred HHHHHHHHHh----cCcHHHHHHHHHHHHh
Confidence 3344555555 4555556655555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.029 Score=56.81 Aligned_cols=182 Identities=15% Similarity=-0.009 Sum_probs=120.9
Q ss_pred cccchHHHHHHHHHHhhhhhH--------HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCC-CH----HHHHHHHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKE--------VDRVIDYCELNDRRLIPLLKTAKENFELALEADNS-NT----HARYWLSKL 95 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g-~~----~a~~~Lg~~ 95 (282)
..+++++|..++..+...... .........+......+++++|..+++++++..+. +. .+...+|.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 356788888888776443221 01111111222223356799999999999873332 22 355667777
Q ss_pred HhcCCCCCcCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC------
Q 023425 96 HLKYHVPGACKAMGAALLVDAAN----MGD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH------ 157 (282)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~------ 157 (282)
+... .+.+.|..+++++.. .|+ ..+..++|.++...++. +.|..++.++.+. +.
T Consensus 501 ~~~~----G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~----~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 501 HHCK----GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL----QAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHc----CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHhccccccHH
Confidence 7644 577999999999874 233 34667888888875555 9999999988764 21
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----G---HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
......+|.++.. .+++++|..+++++... + .+.++..+|.++.. .++++.|..++.++..
T Consensus 573 ~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 573 EFLLRIRAQLLWE----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 1234567888877 79999999999998663 1 24456667888876 6788888887777744
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0063 Score=54.57 Aligned_cols=77 Identities=17% Similarity=0.105 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAA 197 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~ 197 (282)
..++.||+.++.. .+++..|+.+-.++.+. +|+.|+|+-|.++.. .++++.|+..|++|++. .+..+.
T Consensus 257 ~~~~lNlA~c~lK----l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~~df~ka~k~~P~Nka~~ 328 (397)
T KOG0543|consen 257 LACHLNLAACYLK----LKEYKEAIESCNKVLELDPNNVKALYRRGQALLA----LGEYDLARDDFQKALKLEPSNKAAR 328 (397)
T ss_pred HHHhhHHHHHHHh----hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCcHHHH
Confidence 3578899999999 55559999999999987 799999999999999 89999999999999774 678888
Q ss_pred HHHHHHHHc
Q 023425 198 IAYGSLLLR 206 (282)
Q Consensus 198 ~~Lg~~y~~ 206 (282)
..|..|-.+
T Consensus 329 ~el~~l~~k 337 (397)
T KOG0543|consen 329 AELIKLKQK 337 (397)
T ss_pred HHHHHHHHH
Confidence 888887765
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.015 Score=44.38 Aligned_cols=90 Identities=19% Similarity=0.054 Sum_probs=58.1
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CC-----HHHHHHHHHHHhcCCCCc
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-LH-----PGALYLLGTVYLTGDCVK 175 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~-----~~A~~~Lg~~y~~g~g~~ 175 (282)
.+.+.|++.|.+|+. +..+.++.|-+..+.-.++. ++|+.-+.+|.+. |. -.+++.-|.+|.. .
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~----e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl----~ 128 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDD----EEALDDLNKALELAGDQTRTACQAFVQRGLLYRL----L 128 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh----HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH----h
Confidence 345666666666654 34666666666666553333 6666666666665 21 2455667777777 7
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023425 176 KDIASALWCFHRASEKGHAGAAIAYG 201 (282)
Q Consensus 176 ~d~~~A~~~~~~A~~~g~~~a~~~Lg 201 (282)
++.+.|..=|+.|++.|++.|...|-
T Consensus 129 g~dd~AR~DFe~AA~LGS~FAr~QLV 154 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFAREQLV 154 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHHHHHHH
Confidence 78888888888888888877765553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.1 Score=44.47 Aligned_cols=100 Identities=16% Similarity=0.061 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCH---HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDP---DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--- 155 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~---~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--- 155 (282)
..+...|..|.-+... +++++|+..|++... ++.+ .+.+.||.+|+. .+++++|+.+|++.++.
T Consensus 30 ~~~~~~Y~~A~~~~~~----g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 30 NPPSEIYATAQQKLQD----GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCcC
Confidence 4677788888877754 588999999999975 4444 456999999999 56669999999999997
Q ss_pred --CCHHHHHHHHHHHhcC-----------CCCccCH---HHHHHHHHHHHHc
Q 023425 156 --LHPGALYLLGTVYLTG-----------DCVKKDI---ASALWCFHRASEK 191 (282)
Q Consensus 156 --g~~~A~~~Lg~~y~~g-----------~g~~~d~---~~A~~~~~~A~~~ 191 (282)
.-+.+++.+|.++..- .....|. .+|+.-|++-++.
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 3578899999874221 1123333 4677888887775
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.064 Score=44.37 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--G---DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L 156 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g 156 (282)
..+.+.|..|..+... +++.+|+..|++..+. + -++|.+.+|..+.. .+|+..|+..|++-++. +
T Consensus 3 ~~~~~lY~~a~~~~~~----g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 3 DTAEALYQKALEALQQ----GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp --HHHHHHHHHHHHHC----T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH-TT
T ss_pred CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCC
Confidence 3567777788877766 6678888888887752 2 35778888888777 44558888888887775 2
Q ss_pred ---CHHHHHHHHHHHhcCC-CC------ccCHHHHHHHHHHHHHc
Q 023425 157 ---HPGALYLLGTVYLTGD-CV------KKDIASALWCFHRASEK 191 (282)
Q Consensus 157 ---~~~A~~~Lg~~y~~g~-g~------~~d~~~A~~~~~~A~~~ 191 (282)
-+.|++.+|.++..-. ++ .....+|+..|+.-++.
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH
Confidence 3567777777765421 11 23344566666665553
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.02 Score=47.38 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHhcCC-
Q 023425 66 PLLKTAKENFELALEADNS---NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--G---DPDAQYELGCRLRVEN- 136 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g---~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~~g~- 136 (282)
+++.+|+..|++.+..-|+ -+.|.+.+|..+... ++++.|+..|++-++. + -+.|++.+|..+....
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~----~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~ 94 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ----GDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP 94 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence 4599999999999876554 456889999999876 6789999999998752 3 3578999998865431
Q ss_pred ------CCcCCHHHHHHHHHHHHHc--CC-----------------HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 137 ------DYVQSDQQAFYYIEKAVDQ--LH-----------------PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 137 ------~~~~d~~~A~~~~~kAa~~--g~-----------------~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.-.....+|+..|+..++. ++ ..--+.+|..|+. .+.+.-|+..|+..++.
T Consensus 95 ~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~----~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 95 GILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK----RGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC----TT-HHHHHHHHHHHHHH
T ss_pred cchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHH
Confidence 1122346788888887764 11 1222445777777 77888888888887775
Q ss_pred --C---CHHHHHHHHHHHHc
Q 023425 192 --G---HAGAAIAYGSLLLR 206 (282)
Q Consensus 192 --g---~~~a~~~Lg~~y~~ 206 (282)
+ ..+|+..|...|..
T Consensus 171 yp~t~~~~~al~~l~~~y~~ 190 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYK 190 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHH
Confidence 2 25567777777765
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.053 Score=45.45 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhcCCCC
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN----MGD----PDAQYELGCRLRVENDY 138 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~g~~~ 138 (282)
.+++|.+.|.+|.. +|.|+ +++..|-..|.+|++ .|+ ...+...+.+|..
T Consensus 29 k~eeAadl~~~Aan--------~ykla----------K~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk---- 86 (288)
T KOG1586|consen 29 KYEEAAELYERAAN--------MYKLA----------KNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK---- 86 (288)
T ss_pred chHHHHHHHHHHHH--------HHHHH----------HhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc----
Confidence 68999999999942 23332 344666666777764 232 2344445566654
Q ss_pred cCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CC---HHH---HHHHHH
Q 023425 139 VQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GH---AGA---AIAYGS 202 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~---~~a---~~~Lg~ 202 (282)
.|+++|+.++++|++. |. +.-...||.+|... ..|+++|+.+|++|++- |. ..| +...+.
T Consensus 87 -~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd---l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 87 -VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD---LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred -cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 3669999999999885 32 22235688899872 48999999999999883 22 111 222222
Q ss_pred HHHcCCCCcccHHHHHHHHHHHHH
Q 023425 203 LLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 203 ~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+=. ..+.+.+|+..|++.+.
T Consensus 163 yaa----~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 163 YAA----QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHH----HHHHHHHHHHHHHHHHH
Confidence 222 26788899999988876
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=52.93 Aligned_cols=109 Identities=16% Similarity=0.085 Sum_probs=92.2
Q ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHH
Q 023425 104 ACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
+.++.|+.+|++-.+.. |+....|+.++...+. ..+|++.+.+++.. .+.+.+..-+..+.. .++++.|
T Consensus 183 ~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~~~----E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k~~~~lA 253 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERD-PEVAVLLARVYLLMNE----EVEAIRLLNEALKENPQDSELLNLQAEFLLS----KKKYELA 253 (395)
T ss_pred ccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCc----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHH
Confidence 56799999999977654 7888899999987443 48999999999986 467777788888988 8999999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 182 LWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 182 ~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
+...++|++. .+..+++.|+.+|.. .++++.|+...+-..
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~----~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQ----LGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHh----cCCHHHHHHHHhcCc
Confidence 9999999886 568899999999999 899999987776554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.011 Score=45.04 Aligned_cols=92 Identities=18% Similarity=-0.069 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCC------HHHHHHHHHHHhcCCCCc
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGD------PDAQYELGCRLRVENDYV 139 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~------~~A~~~Lg~~y~~g~~~~ 139 (282)
++.+.|++.|.+++..-|..+.++++-+..+... .+.++|+.-+.+|.+... -.|+..-|.+|...++-
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq----~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d- 131 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQ----GDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND- 131 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHc----CChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch-
Confidence 5699999999999999999999999999999865 466999999999997632 24677778888874444
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023425 140 QSDQQAFYYIEKAVDQLHPGALYLLG 165 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~g~~~A~~~Lg 165 (282)
+.|..-|+.|++.|.+-|.-.|-
T Consensus 132 ---d~AR~DFe~AA~LGS~FAr~QLV 154 (175)
T KOG4555|consen 132 ---DAARADFEAAAQLGSKFAREQLV 154 (175)
T ss_pred ---HHHHHhHHHHHHhCCHHHHHHHH
Confidence 99999999999999987765553
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0052 Score=49.33 Aligned_cols=100 Identities=23% Similarity=0.113 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC------CccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcc
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDC------VKKDIASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g------~~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~ 212 (282)
+.|.+.++..... .+++++++.|..+++-.. ...-+++|+.=|+.|+. .....|+++||..|..--....
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 4555555554443 467777777766665211 11224455566666644 4678999999999987433455
Q ss_pred cHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhccHHHHHH
Q 023425 213 CLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLRW 261 (282)
Q Consensus 213 ~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g~~~a~~~ 261 (282)
+..+|..+| ++|..+|++|.+..+....|+
T Consensus 88 d~~~A~~~F-------------------~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 88 DTAEAEEYF-------------------EKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp -HHHHHHHH-------------------HHHHHHHHHHHHH-TT-HHHH
T ss_pred ChHHHHHHH-------------------HHHHHHHHHHHhcCCCcHHHH
Confidence 666777777 567777777777765555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.064 Score=47.76 Aligned_cols=139 Identities=19% Similarity=0.189 Sum_probs=83.5
Q ss_pred HHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh------CCCHH
Q 023425 56 YCELNDRRLIPLLKTAKENFELALEADNSNTH------ARYWLSKLHLKYHVPGACKAMGAALLVDAAN------MGDPD 123 (282)
Q Consensus 56 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~------a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~------~g~~~ 123 (282)
...++.+--..-+++++..|++|........+ .+..||.++-.. +|+++|.-+..+|++ .++..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l----~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL----KDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH----HhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 33444455556688888888888764333332 455677776654 677888888777765 24544
Q ss_pred H------HHHHHHHHhcCCCCcCCHHHHHHHHHHHHH----cCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 124 A------QYELGCRLRVENDYVQSDQQAFYYIEKAVD----QLH----PGALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 124 A------~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~----~g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
+ .+.++..+...+.. -.|.++-+.|.+ .|+ +.++.-+|.+|.. .+|.+.|+.-|++|.
T Consensus 202 ~kyr~~~lyhmaValR~~G~L----gdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~----~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRL----GDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS----RGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh----cccHhHHHHHHHHHH
Confidence 4 34444444443333 445555544433 353 5566778888888 788888888888773
Q ss_pred H----c----CCHHHHHHHHHHHHc
Q 023425 190 E----K----GHAGAAIAYGSLLLR 206 (282)
Q Consensus 190 ~----~----g~~~a~~~Lg~~y~~ 206 (282)
. . |..+++-..+.+...
T Consensus 274 ~~m~~~gdrmgqv~al~g~Akc~~~ 298 (518)
T KOG1941|consen 274 GTMASLGDRMGQVEALDGAAKCLET 298 (518)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 2 2 335556666666654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.022 Score=52.62 Aligned_cols=123 Identities=16% Similarity=0.105 Sum_probs=76.9
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAA 111 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~ 111 (282)
..+.|.+.+.++|+ .+|..+-++.-++|++.+|+++.|+..|+.=.. ....++..
T Consensus 167 ~~r~Aq~IMq~AWR-------------------ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA------~Ti~Eae~ 221 (539)
T PF04184_consen 167 ALRPAQEIMQKAWR-------------------ERNPQARIKAAKEALEINPDCADAYILLAEEEA------STIVEAEE 221 (539)
T ss_pred ccCHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc------cCHHHHHH
Confidence 34577778888876 345788888899999999999999988776322 34588999
Q ss_pred HHHHHHhCCC---------------------------HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCHHH
Q 023425 112 LLVDAANMGD---------------------------PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHPGA 160 (282)
Q Consensus 112 ~~~~Aa~~g~---------------------------~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~~A 160 (282)
+|++|.+.|. +-+-..||++..+-++. ++|++.|+.-.+. .+...
T Consensus 222 l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~----~EAIk~~rdLlke~p~~~~l~I 297 (539)
T PF04184_consen 222 LLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRL----REAIKMFRDLLKEFPNLDNLNI 297 (539)
T ss_pred HHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCCh----HHHHHHHHHHHhhCCccchhhH
Confidence 9999876331 11233445554444444 5555555555542 23334
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 161 LYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
..+|-.+++. .+.+.++...+.+
T Consensus 298 renLie~LLe----lq~Yad~q~lL~k 320 (539)
T PF04184_consen 298 RENLIEALLE----LQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHHHh----cCCHHHHHHHHHH
Confidence 4555555555 5555555555544
|
The molecular function of this protein is uncertain. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0026 Score=42.46 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
++++|+.+|+++... +++++.+.|+.+|.. .+++++|..+++++...
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLK----QGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH----TT-HHHHHHHHHCCHGG
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 446666666666554 566666666666666 56666666666665554
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.016 Score=49.52 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-----CCH
Q 023425 125 QYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-----LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-----GHA 194 (282)
Q Consensus 125 ~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-----g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----g~~ 194 (282)
.|+.+.-++. ..|+..|..-|..-++. --+.|+|+||.+++. .+|++.|...|...+.. .-|
T Consensus 144 ~Y~~A~~~~k----sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLYK----SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCCh
Confidence 6777766666 44558999999988887 248999999999999 99999999999998874 348
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
++++.||.+... .++.++|...++..+
T Consensus 216 dallKlg~~~~~----l~~~d~A~atl~qv~ 242 (262)
T COG1729 216 DALLKLGVSLGR----LGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHH
Confidence 899999999887 666655544444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0043 Score=41.98 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 139 VQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
.+++++|+.++++++.. .++..++..|.+|.. .+++.+|+..|+++++..
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQ----LGRYEEALEDLERALELS 59 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH----hccHHHHHHHHHHHHHHC
Confidence 44557777777777665 466666777777777 677777777777776653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.02 Score=51.25 Aligned_cols=114 Identities=13% Similarity=-0.107 Sum_probs=85.2
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCc
Q 023425 62 RRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
....++.++|.++.+.++. ...++.-+-.++. ..+.|...=++..++.+. +.+|..+..||.+++. .
T Consensus 273 li~l~~~~~A~~~i~~~Lk-~~~D~~L~~~~~~------l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k----~ 341 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALK-RQWDPRLCRLIPR------LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK----N 341 (400)
T ss_pred HHHcCChHHHHHHHHHHHH-hccChhHHHHHhh------cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH----h
Confidence 3345678999999999985 3466662222222 233555666666666663 4678999999999998 6
Q ss_pred CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 140 QSDQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
+.+.+|-.+|+.|+.. -+...+..+|..|.. .+++.+|-..++.+.-
T Consensus 342 ~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~----~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 342 KLWGKASEALEAALKLRPSASDYAELADALDQ----LGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHH
Confidence 6779999999999887 477888889999999 8999999999988863
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0062 Score=53.39 Aligned_cols=127 Identities=16% Similarity=0.061 Sum_probs=81.0
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc---CCCCcC
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRV---ENDYVQ 140 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~---g~~~~~ 140 (282)
..+++++|++.+.+. ++.++....-.+|... .+.+.|.+.++..-+.++-.....|+..+.. |+ .
T Consensus 114 ~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~----~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~---e 181 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-----GSLELLALAVQILLKM----NRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG---E 181 (290)
T ss_dssp CCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHT----T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT---T
T ss_pred HcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc---h
Confidence 346677777666554 4666666666666655 3447777777777666655555555543322 22 2
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
.+++|+..|+..++. ..+..+..++.++.. .+++++|...+++|.+. +++.+..|+..+...
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH 247 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 237788888887766 355666677777777 78888888888887654 467777777776554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0012 Score=40.27 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSK 94 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~ 94 (282)
.+++++|+++|+++++.+|+++.++..||.
T Consensus 14 ~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 14 LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345788888888888888888888777765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.023 Score=51.02 Aligned_cols=113 Identities=16% Similarity=0.035 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHcCC---------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHH
Q 023425 66 PLLKTAKENFELALEADN---------------SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYEL 128 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~---------------g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~L 128 (282)
+++..|..-|++|+..=. ---.++.||+.++... .++.+|+.+..+++ +++|+.|+|.-
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl----~~~~~Ai~~c~kvLe~~~~N~KALyRr 297 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKL----KEYKEAIESCNKVLELDPNNVKALYRR 297 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhh----hhHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 347777777777764110 1233678899999877 67799999999997 56899999999
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC-HHHHHHHHHHHHH
Q 023425 129 GCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKD-IASALWCFHRASE 190 (282)
Q Consensus 129 g~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d-~~~A~~~~~~A~~ 190 (282)
|..+...+.+ +.|+..|+++++. .+..+...|..|-.. .++ .++..+.|.....
T Consensus 298 G~A~l~~~e~----~~A~~df~ka~k~~P~Nka~~~el~~l~~k----~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 298 GQALLALGEY----DLARDDFQKALKLEPSNKAARAELIKLKQK----IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHhhccH----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 9999995555 9999999999987 678888888877554 222 2333556655543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.22 Score=39.60 Aligned_cols=175 Identities=23% Similarity=0.094 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHH-HHhcCCCCcC
Q 023425 66 PLLKTAKENFELALE--ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGC-RLRVENDYVQ 140 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~--~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~-~y~~g~~~~~ 140 (282)
+++..+...+..+.. ..+.....++.+|..+... .++..++..+.++... .........+. ++.. ..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 144 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEAL----GKYEEALELLEKALALDPDPDLAEALLALGALYE----LG 144 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH----hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH----cC
Confidence 345666666666654 4555666666666665543 2346666666666642 22233333333 4555 33
Q ss_pred CHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCcc
Q 023425 141 SDQQAFYYIEKAVDQL-----HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG---HAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 141 d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~ 212 (282)
+.+.|..+|.++.... .......++..+.. .++++.|+..+.++.... .......++..+.. ..
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 216 (291)
T COG0457 145 DYEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK----LG 216 (291)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH----cc
Confidence 3366666666665531 23444444444444 556666666666665542 24556666666665 34
Q ss_pred cHHHHHHHHHHHHHHH------chhch--hccCCCHHHHHHHHHHHHHhccH
Q 023425 213 CLTKLNAKRVSAAKKA------RANLE--SNLMNPVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 213 ~~~~A~~~~~~a~~~a------~~~lg--~~~~~~~~~A~~~~~~Aa~~g~~ 256 (282)
++..|...+..+.... ...++ ....++...+...+.++......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 5666666666665521 12222 11334566777777777665543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.36 Score=43.68 Aligned_cols=107 Identities=12% Similarity=-0.015 Sum_probs=60.3
Q ss_pred CCCchhhHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHHh
Q 023425 61 DRRLIPLLKTAKENFELALEA----DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN---MGDPDAQYELGCRLR 133 (282)
Q Consensus 61 ~~~~~~~~~~A~~~~~~a~~~----~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~ 133 (282)
.+.-..|++..++..+..-.. -+..+...+.++..+...+. ++|.++|..++..+.. ..+++.+..+|.+|.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~-~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNK-PGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhccc-CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 344456677777666665433 22345556666666665332 4677777777777543 236777777777764
Q ss_pred c----C-CCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 023425 134 V----E-NDYVQSDQQAFYYIEKAVDQL-HPGALYLLGTVY 168 (282)
Q Consensus 134 ~----g-~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y 168 (282)
+ . ..-....++|+.||.++.+.. +...=.|++.++
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL 269 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLL 269 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHH
Confidence 3 1 111233577777777777663 333334444443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.25 Score=43.90 Aligned_cols=168 Identities=13% Similarity=0.008 Sum_probs=118.6
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+.+..|+.-|..++...+.. ....|..+..+...+.-.-|+.-+.+.+++.|+...|-..-|.++... ..++.|
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~-Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~----Gele~A 125 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNN-YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ----GELEQA 125 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc----ccHHHH
Confidence 667888888888887744433 333333334444445566778888889999999999999999998866 456999
Q ss_pred HHHHHHHHhCC-----CHHHHHHHHHHHhcC--------CCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCC
Q 023425 110 AALLVDAANMG-----DPDAQYELGCRLRVE--------NDYVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLTGDCV 174 (282)
Q Consensus 110 ~~~~~~Aa~~g-----~~~A~~~Lg~~y~~g--------~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g~ 174 (282)
+.=|.+.++.. ..+++..|+.+-... .....|+..|+.+....++.. +++-...-+.||..
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~---- 201 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA---- 201 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh----
Confidence 99999988542 345666665442110 011345588888888888874 34444556788888
Q ss_pred ccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc
Q 023425 175 KKDIASALWCFHRASE--KGHAGAAIAYGSLLLR 206 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~ 206 (282)
.+++.+|++=++.+.. +++.+++|.++.++++
T Consensus 202 ~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 8899999999999866 4678889999888876
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0041 Score=37.94 Aligned_cols=40 Identities=20% Similarity=0.063 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGS 202 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~ 202 (282)
.+++.||..|.. .+++++|+.+|+++++. +++.++..||.
T Consensus 2 ~~~~~la~~~~~----~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRR----LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666666666 66777777777776554 45666666654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.081 Score=50.24 Aligned_cols=110 Identities=12% Similarity=-0.058 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+.+.+.++..+..+.-.|.|++..-..|..+... .+.++|..+-+.++. .++.-.|..+|.++.. .++++
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~l----g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~----dK~Y~ 92 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCL----GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS----DKKYD 92 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcc----cchHHHHHHHHHHhccCcccchhHHHHHHHHhh----hhhHH
Confidence 3477888888888888889999988888877644 456889888888874 4577788889999888 66679
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
+|++||+.|... ++.+-+..|+.+-.. .+|++-.+.--.+
T Consensus 93 eaiKcy~nAl~~~~dN~qilrDlslLQ~Q----mRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDNLQILRDLSLLQIQ----MRDYEGYLETRNQ 134 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHH----HHhhhhHHHHHHH
Confidence 999999999887 678888888877666 6666655443333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.11 Score=46.43 Aligned_cols=150 Identities=13% Similarity=0.156 Sum_probs=101.5
Q ss_pred CCCchhhHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----CCCH----HHHHH
Q 023425 61 DRRLIPLLKTAKENFELALEADNSNT-----HARYWLSKLHLKYHVPGACKAMGAALLVDAAN----MGDP----DAQYE 127 (282)
Q Consensus 61 ~~~~~~~~~~A~~~~~~a~~~~~g~~-----~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~g~~----~A~~~ 127 (282)
......++.+++.+-+-.++...-++ .+...+|..+... .-.+++++.|++|.+ .+|+ .-+..
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgl----s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGL----SVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhH----HHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 33344556677666666654322222 2444455555533 345899999999864 2333 46778
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc------CC------HHHHHHHHHHHhcCCCCccCHHHHHHHHHHH----HHc
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ------LH------PGALYLLGTVYLTGDCVKKDIASALWCFHRA----SEK 191 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~------g~------~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A----~~~ 191 (282)
||.+|-. .+|+++|+-+..+|++. ++ .-+++.|+..+.. .+..-.|.++.+.| ++.
T Consensus 168 Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~----~G~LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 168 LGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL----LGRLGDAMECCEEAMKLALQH 239 (518)
T ss_pred HHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH----hcccccHHHHHHHHHHHHHHh
Confidence 8888877 77889999999999885 33 3455666766666 55555566655554 556
Q ss_pred CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 192 GH----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 192 g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
|+ +..+.-+|.+|.. ..|.+.|+.-|+.|..
T Consensus 240 Gdra~~arc~~~~aDIyR~----~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRS----RGDLERAFRRYEQAMG 274 (518)
T ss_pred CChHHHHHHHHHHHHHHHh----cccHhHHHHHHHHHHH
Confidence 75 5678889999998 8899999999999875
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0084 Score=33.89 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+.+++.+|.+|.. .+++++|+++|++|+..
T Consensus 1 a~~~~~lg~~~~~----~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ----LGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 4567777888777 77888888888877654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0087 Score=33.99 Aligned_cols=29 Identities=38% Similarity=0.493 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.+++++|.+|.. .+++++|+.+|++|++.
T Consensus 2 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQ----LGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCchHHHHHHHHHHHH
Confidence 466667777776 67777777777776654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0036 Score=35.97 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHHhc
Q 023425 120 GDPDAQYELGCRLRV 134 (282)
Q Consensus 120 g~~~A~~~Lg~~y~~ 134 (282)
++++++++||.+|..
T Consensus 11 ~n~~a~~nla~~~~~ 25 (34)
T PF13431_consen 11 NNAEAYNNLANLYLN 25 (34)
T ss_pred CCHHHHHHHHHHHHH
Confidence 344444444444444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.78 Score=38.93 Aligned_cols=188 Identities=15% Similarity=0.054 Sum_probs=105.9
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC---CCcCH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV---PGACK 106 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~---~~~~~ 106 (282)
+-+++.|-+.|.++.... ...++|++|...+.+|++.. .+-.++|.-+..|+...- .-..+
T Consensus 24 kad~dgaas~yekAAvaf---------------RnAk~feKakdcLlkA~~~y-EnnrslfhAAKayEqaamLake~~kl 87 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAF---------------RNAKKFEKAKDCLLKASKGY-ENNRSLFHAAKAYEQAAMLAKELSKL 87 (308)
T ss_pred CCCchhhHHHHHHHHHHH---------------HhhccHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 334566666666654322 22345899999999998533 233345544444432211 11456
Q ss_pred HHHHHHHHHHH----hCCCHHHH-HHH---HHHHhcCCCCcCCHHHHHHHHHHHHHc---CC-----HHHHHHHHHHHhc
Q 023425 107 AMGAALLVDAA----NMGDPDAQ-YEL---GCRLRVENDYVQSDQQAFYYIEKAVDQ---LH-----PGALYLLGTVYLT 170 (282)
Q Consensus 107 ~~A~~~~~~Aa----~~g~~~A~-~~L---g~~y~~g~~~~~d~~~A~~~~~kAa~~---g~-----~~A~~~Lg~~y~~ 170 (282)
.+++.+|++|+ +.|.|+.. -.| |.++. ..++++|+++|++++.. ++ .+-.-..+.+|..
T Consensus 88 sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le-----nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 88 SEVVDLYEKASELYVECGSPDTAAMALEKAAKALE-----NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-----cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 89999999996 45766532 223 33333 45679999999999874 21 1222334455555
Q ss_pred CCCCccCHHHHHHHHHHHH-------HcCCH-HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH----------ch-h
Q 023425 171 GDCVKKDIASALWCFHRAS-------EKGHA-GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA----------RA-N 231 (282)
Q Consensus 171 g~g~~~d~~~A~~~~~~A~-------~~g~~-~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a----------~~-~ 231 (282)
.+.+.+|-..+.+-. ..+++ .+....-.+|.. ..|+..|...|+...+.. .. -
T Consensus 163 ----l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~----~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 163 ----LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY----AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred ----hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh----HHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 566777766666531 11221 233333344444 678888988888866521 11 2
Q ss_pred chhccCCCHHHHHHH
Q 023425 232 LESNLMNPVEKAKEQ 246 (282)
Q Consensus 232 lg~~~~~~~~~A~~~ 246 (282)
|+....+|.++....
T Consensus 235 L~ayd~gD~E~~~kv 249 (308)
T KOG1585|consen 235 LTAYDEGDIEEIKKV 249 (308)
T ss_pred HHHhccCCHHHHHHH
Confidence 334466666665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.013 Score=34.05 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 160 ALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 160 A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
|+.+||.+|.. .+++++|+++|++++
T Consensus 1 al~~Lg~~~~~----~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQ----QGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHH----CT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 45677777777 777777777777754
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.5 Score=44.39 Aligned_cols=150 Identities=12% Similarity=0.031 Sum_probs=94.3
Q ss_pred cccchHHHHHHHHHHhhhhh---HHHH---HHHHHhh-cCCC---chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc
Q 023425 29 LHSRNKKAMELIAKGWSALK---EVDR---VIDYCEL-NDRR---LIPLLKTAKENFELALEADNSNTHARYWLSKLHLK 98 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~---~~~~---~~~~~~~-~~~~---~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~ 98 (282)
.+++-+.++..+..+.+... .... ..++... ...+ ...+.+.|.+.+....+.-|+.+--.+.-|.++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 37888888888887765222 1111 1111110 0111 45677888888888877777777777777888775
Q ss_pred CCCCCcCHHHHHHHHHHHHhCC------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHH--HHHHHHHh
Q 023425 99 YHVPGACKAMGAALLVDAANMG------DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-LHPGAL--YLLGTVYL 169 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~--~~Lg~~y~ 169 (282)
. .+.++|+.+|.++++.. +.-..+.+|-++.. ..|+++|..+|.+..+. ....|. |..|.|+.
T Consensus 280 ~----g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 280 K----GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred h----cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4 56688888888887432 12345566666665 56668888888888776 333443 44666666
Q ss_pred cCCCCccCH-------HHHHHHHHHHHH
Q 023425 170 TGDCVKKDI-------ASALWCFHRASE 190 (282)
Q Consensus 170 ~g~g~~~d~-------~~A~~~~~~A~~ 190 (282)
. .++. ++|.++|+++-.
T Consensus 352 ~----l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 M----LGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred h----hccchhhhhhHHHHHHHHHHHHH
Confidence 5 4444 777777777644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.054 Score=49.96 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH---hCCC--------HHHHHHHHHHHhc
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA---NMGD--------PDAQYELGCRLRV 134 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa---~~g~--------~~A~~~Lg~~y~~ 134 (282)
.+...+..--+-++....+.+.+.+.-...++-. +++.+|.+.+..+- ++|. --++.|||.+++.
T Consensus 220 ~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~----gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~ 295 (696)
T KOG2471|consen 220 RNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAH----GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ 295 (696)
T ss_pred HHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHh----cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee
Confidence 3444444444555555567777777767766533 57799998888762 4451 1245789988888
Q ss_pred CCCCcCCHHHHHHHHHHHHH-------c-------------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--C
Q 023425 135 ENDYVQSDQQAFYYIEKAVD-------Q-------------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--G 192 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~-------~-------------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g 192 (282)
-+.+ +.+..+|.+|.+ . ...+-.|+.|..|+. .+++-.|++||.+|+.. .
T Consensus 296 ~~~y----~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh----~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 296 LGCY----QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH----SGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred hhhH----HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh----cCCcHHHHHHHHHHHHHHhc
Confidence 5555 889999999985 1 235778999999999 89999999999999885 6
Q ss_pred CHHHHHHHHHHHH
Q 023425 193 HAGAAIAYGSLLL 205 (282)
Q Consensus 193 ~~~a~~~Lg~~y~ 205 (282)
+|.-|.+|+.|..
T Consensus 368 nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 368 NPRLWLRLAECCI 380 (696)
T ss_pred CcHHHHHHHHHHH
Confidence 7999999998876
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.063 Score=47.09 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=91.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|+..+.++ ..+.-..-.+.... ..++++.|.+.++..-+.+++..-.....+.+....++ ..+.+|
T Consensus 115 ~~~~~~AL~~l~~~-~~lE~~al~Vqi~L-----~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~--e~~~~A 186 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-GSLELLALAVQILL-----KMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG--EKYQDA 186 (290)
T ss_dssp CCHHHHHHCCCTTT-TCHHHHHHHHHHHH-----HTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT--TCCCHH
T ss_pred cCCHHHHHHHHHcc-CcccHHHHHHHHHH-----HcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc--hhHHHH
Confidence 56788888877765 21221111111111 13458999999999987766554444444444332222 456999
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCH-HHHHHH
Q 023425 110 AALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDI-ASALWC 184 (282)
Q Consensus 110 ~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~-~~A~~~ 184 (282)
+..|+.-.+. ..+.....++.++...++ +++|...+++|.+. +++++..++..+... .++. +.+.++
T Consensus 187 ~y~f~El~~~~~~t~~~lng~A~~~l~~~~----~~eAe~~L~~al~~~~~~~d~LaNliv~~~~----~gk~~~~~~~~ 258 (290)
T PF04733_consen 187 FYIFEELSDKFGSTPKLLNGLAVCHLQLGH----YEEAEELLEEALEKDPNDPDTLANLIVCSLH----LGKPTEAAERY 258 (290)
T ss_dssp HHHHHHHHCCS--SHHHHHHHHHHHHHCT-----HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH----TT-TCHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH----hCCChhHHHHH
Confidence 9999998865 356777788889988444 49999999999876 789999999988766 4444 344445
Q ss_pred HHH
Q 023425 185 FHR 187 (282)
Q Consensus 185 ~~~ 187 (282)
+.+
T Consensus 259 l~q 261 (290)
T PF04733_consen 259 LSQ 261 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.27 Score=46.67 Aligned_cols=124 Identities=14% Similarity=0.021 Sum_probs=91.2
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHH--HHHHHHHHH
Q 023425 55 DYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPD--AQYELGCRL 132 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y 132 (282)
.+.....+...+++++|+.+..+||+..|..++.++.-|.++... ++..+|..++..|-+++-.+ .-...+..+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~----G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA----GDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 333334444567899999999999999999999999999999977 57799999999998776444 334456666
Q ss_pred hcCCCCcCCHHHHHHHHHHHHHcC-C-------HHHH---HHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 133 RVENDYVQSDQQAFYYIEKAVDQL-H-------PGAL---YLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 133 ~~g~~~~~d~~~A~~~~~kAa~~g-~-------~~A~---~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
++-+.+ ++|......-.+.+ + .+++ ..-|..|.. .+++..|++.|.....
T Consensus 273 LRa~~~----e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r----~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRI----EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR----QGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCH----HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence 664444 77877776665543 1 2233 335777887 7888899888887644
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.84 Score=38.13 Aligned_cols=157 Identities=13% Similarity=-0.037 Sum_probs=90.7
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHH
Q 023425 53 VIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGC 130 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~ 130 (282)
.+....|...-..+|++.|.+.|....|+||++.-|..+-|..+..++. ++-|.+-+.+-- ++.+|---..|-.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR----~~LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR----YKLAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCc----hHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 3334444455556889999999999999999999999999988777644 466666555554 3444433323221
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHhcCCCCccCHHHHHHHHHHHHHc------CCHHHHHHHHHH
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQLHPGAL-YLLGTVYLTGDCVKKDIASALWCFHRASEK------GHAGAAIAYGSL 203 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~-~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------g~~~a~~~Lg~~ 203 (282)
.+. .-|+++|..-+.+=++.-+.+-+ ++|-..|+... ..+...+-...-+.. --.+++|.||..
T Consensus 176 --~E~---k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgki----S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 176 --NEQ---KLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKI----SEETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred --HHh---hCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhc----cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 111 33556666655555544332222 22223333211 111111111111111 125678888888
Q ss_pred HHcCCCCcccHHHHHHHHHHHHH
Q 023425 204 LLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 204 y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
|.. .++...|...|+-|+.
T Consensus 247 ~l~----~G~~~~A~~LfKLaia 265 (297)
T COG4785 247 YLS----LGDLDEATALFKLAVA 265 (297)
T ss_pred Hhc----cccHHHHHHHHHHHHH
Confidence 887 7888888888888876
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.86 Score=37.17 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAAN---MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHP 158 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~ 158 (282)
..-.+.||..+... .++.+|...|.+|+. .+++.-+..|+...+. .++...|...+++.-+- ..|
T Consensus 89 vqnr~rLa~al~el----Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa----~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 89 VQNRYRLANALAEL----GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA----IQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHHHHHHHHHHHh----hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh----hccHHHHHHHHHHHhhcCCccCCC
Confidence 34466788887765 467999999999985 4778888888888777 45558999999888775 468
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-HHchhchhcc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK-GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK-KARANLESNL 236 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~a~~~lg~~~ 236 (282)
+.+..+|..|.. .+.+.+|..-|+.+++. ..+.+-...+.++..-.....+...+....+.+.. ..++.
T Consensus 161 d~~Ll~aR~laa----~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r----- 231 (251)
T COG4700 161 DGHLLFARTLAA----QGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR----- 231 (251)
T ss_pred CchHHHHHHHHh----cCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH-----
Confidence 889999999998 78899999999999875 56788888888888732233333333334433332 22322
Q ss_pred CCCHHHHHHHHHHHHHh
Q 023425 237 MNPVEKAKEQFEVAAQA 253 (282)
Q Consensus 237 ~~~~~~A~~~~~~Aa~~ 253 (282)
+.+.+|.+.|.+.
T Consensus 232 ----kh~reW~~~A~~~ 244 (251)
T COG4700 232 ----KHHREWIKTANER 244 (251)
T ss_pred ----HHHHHHHHHHHHH
Confidence 5677787777543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.73 E-value=3.2 Score=43.43 Aligned_cols=188 Identities=10% Similarity=-0.023 Sum_probs=122.7
Q ss_pred CCCchhhHHHHHHHHHHHHHcC-C-------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCH-HHHHHHHHH
Q 023425 61 DRRLIPLLKTAKENFELALEAD-N-------SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDP-DAQYELGCR 131 (282)
Q Consensus 61 ~~~~~~~~~~A~~~~~~a~~~~-~-------g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~-~A~~~Lg~~ 131 (282)
.+....++++|.+.+++|+..- + +--.|+.||=++|- ..+.-.+.|++|++-.++ .-+..|..+
T Consensus 1467 f~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-------~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1467 FHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-------TEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-------cHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4445677999999999998521 1 11224444444442 447777899999987654 567778889
Q ss_pred HhcCCCCcCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 023425 132 LRVENDYVQSDQQAFYYIEKAVDQ-L-HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GHAGAAIAYGSLLL 205 (282)
Q Consensus 132 y~~g~~~~~d~~~A~~~~~kAa~~-g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~~~a~~~Lg~~y~ 205 (282)
|...... ++|.++|+.-++. + ....|..+|..++. ..+-+.|...+.+|+.- .+.+-.-.-+.+-+
T Consensus 1540 y~k~ek~----~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1540 YEKSEKN----DEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHhhcc----hhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 9886666 8999999998876 5 67778888888887 55557788888888763 35555555555555
Q ss_pred cCCCCcccHHHHHHHHHHHHH------HHchhch--hccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Q 023425 206 RGVQVPECLTKLNAKRVSAAK------KARANLE--SNLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEE 267 (282)
Q Consensus 206 ~g~g~~~~~~~A~~~~~~a~~------~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~ 267 (282)
+ -+|.+.+...|+--.. .-|.-.- .+..++.+-.+..|++++..+ ...+.+.+.+..+
T Consensus 1612 k----~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1612 K----YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred h----cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 5 4566665555554443 2232222 235567788888899998887 3334444444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1 Score=41.82 Aligned_cols=180 Identities=15% Similarity=0.068 Sum_probs=115.5
Q ss_pred hhhhhhhHHhhhhhhhcchh----------hhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHH
Q 023425 5 ISKASTLKSAALGLLQSNQH----------QKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKEN 74 (282)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 74 (282)
...+.+++.++|.|..-..= ..-..+.+...|...+..++...+.......|... .-..++++.-.++
T Consensus 382 ~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel--ElqL~efDRcRkL 459 (677)
T KOG1915|consen 382 VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL--ELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH--HHHHhhHHHHHHH
Confidence 34556667666665443321 11112456677888888777655543333233221 1124679999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 75 FELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 75 ~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
|++-++-.|.+..++...|.+-... .|.+.|...|+.|+++...+.=-.|=..|.+-.-.....++|..+|++-.+
T Consensus 460 YEkfle~~Pe~c~~W~kyaElE~~L----gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 460 YEKFLEFSPENCYAWSKYAELETSL----GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHhcChHhhHHHHHHHHHHHHh----hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 9999999999999999888887655 566899999999997654444334444444333234456999999999998
Q ss_pred c-CCHHHHHHHHHHHhcC-CC-----------CccCHHHHHHHHHHHHH
Q 023425 155 Q-LHPGALYLLGTVYLTG-DC-----------VKKDIASALWCFHRASE 190 (282)
Q Consensus 155 ~-g~~~A~~~Lg~~y~~g-~g-----------~~~d~~~A~~~~~~A~~ 190 (282)
. .|...+...+..=..- .+ ++.+...|...|+.|..
T Consensus 536 rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 536 RTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 7 6777666665543311 11 23367788888888854
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.1 Score=42.03 Aligned_cols=118 Identities=16% Similarity=0.045 Sum_probs=63.9
Q ss_pred CcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHhcCCCC
Q 023425 103 GACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL------HPGALYLLGTVYLTGDCV 174 (282)
Q Consensus 103 ~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g------~~~A~~~Lg~~y~~g~g~ 174 (282)
+.+.+.|...+....+ ++.+--.+.-|.++.. ..|.++|+.+|+++.... +.-+.+.+|.++.-
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~----~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~---- 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL----KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF---- 317 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----
Confidence 4455666666666655 4555555556666665 333477777777666421 23445666666666
Q ss_pred ccCHHHHHHHHHHHHHcC-CHHH--HHHHHHHHHcCCC---CcccHHHHHHHHHHHHHHH
Q 023425 175 KKDIASALWCFHRASEKG-HAGA--AIAYGSLLLRGVQ---VPECLTKLNAKRVSAAKKA 228 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~~g-~~~a--~~~Lg~~y~~g~g---~~~~~~~A~~~~~~a~~~a 228 (282)
..|+++|.++|.+-.+.. ...+ .|..|.|+..-.. .+...++|..+++++....
T Consensus 318 ~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 667777777777666543 2222 3444455444111 1222356666666665533
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.48 Score=45.36 Aligned_cols=135 Identities=8% Similarity=0.004 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcC---CCCcCCHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVE---NDYVQSDQQ 144 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g---~~~~~d~~~ 144 (282)
++.-...|.+.+++.--.|..-.|.+..+... .-.+++++.|++.+..=.++-.+.+=..|+.. .-.....+.
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh----~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEH----KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 44444555555555555555555666655543 23366666666665442222222222222210 000112366
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023425 145 AFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLR 206 (282)
Q Consensus 145 A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~ 206 (282)
|..+|++|.+.=.|...-.+-.+|..-...-|--..|+..|++|...-.....+.+-.+|..
T Consensus 569 aRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 569 ARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66777777664223333223222222111123445566666666666555555555555543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.038 Score=31.16 Aligned_cols=28 Identities=39% Similarity=0.499 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
.+++.+|.+|.. .+++++|+++|+++++
T Consensus 2 ~~~~~lg~~y~~----~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQ----LGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHH----TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 456677777777 7777777777777765
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.1 Score=35.42 Aligned_cols=149 Identities=23% Similarity=0.159 Sum_probs=70.3
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHhcCCCCCcCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcC
Q 023425 62 RRLIPLLKTAKENFELALEADNSNTHARYWLSK-LHLKYHVPGACKAMGAALLVDAANMG-----DPDAQYELGCRLRVE 135 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~-~~~~~~~~~~~~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~g 135 (282)
....+++.+++..+.+++...+.+.......+. ++... .+.+.|...|.++.... .......++..+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 179 (291)
T COG0457 105 LEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL----GDYEEALELYEKALELDPELNELAEALLALGALLEA- 179 (291)
T ss_pred HHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-
Confidence 333444555555666655544444333333333 33322 34456666666654421 12233333333222
Q ss_pred CCCcCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCC
Q 023425 136 NDYVQSDQQAFYYIEKAVDQ--L-HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH--AGAAIAYGSLLLRGVQV 210 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~--g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~--~~a~~~Lg~~y~~g~g~ 210 (282)
..+.+.|+..+.++... . .......++..+.. .+++.+|+..+.++..... ......++..+..
T Consensus 180 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 248 (291)
T COG0457 180 ---LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK----LGKYEEALEYYEKALELDPDNAEALYNLALLLLE---- 248 (291)
T ss_pred ---hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH----cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH----
Confidence 22335666666665554 2 24555555555555 4455666666666555433 3445555555542
Q ss_pred cccHHHHHHHHHHHHH
Q 023425 211 PECLTKLNAKRVSAAK 226 (282)
Q Consensus 211 ~~~~~~A~~~~~~a~~ 226 (282)
....+.+...+.++..
T Consensus 249 ~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 249 LGRYEEALEALEKALE 264 (291)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 2245555555554443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.68 Score=40.46 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=92.7
Q ss_pred ccchHHHHHHHHHHhhhhhH---HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCC---
Q 023425 30 HSRNKKAMELIAKGWSALKE---VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPG--- 103 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~--- 103 (282)
..++..||+.+..-.+..+. .-...++|+.. ..++..|..+|++.....|....--+..+..+++.....
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~----~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYR----LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 45688888877654443331 11223333322 356899999999998776555433333333333221110
Q ss_pred ------cC---H-------HHHH-----------HHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-
Q 023425 104 ------AC---K-------AMGA-----------ALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ- 155 (282)
Q Consensus 104 ------~~---~-------~~A~-----------~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~- 155 (282)
.| . +.|+ .+.++-...|+++...+.|-+.+. ..+++.|++-|+.|.+.
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec----cccHHHHHHHHHHHHhhc
Confidence 00 0 1111 111111123566777778877776 34459999999999987
Q ss_pred C-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 156 L-HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 156 g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
| .|--.++++.+++. .+++..|+++....++.|
T Consensus 175 GyqpllAYniALaHy~----~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYS----SRQYASALKHISEIIERG 208 (459)
T ss_pred CCCchhHHHHHHHHHh----hhhHHHHHHHHHHHHHhh
Confidence 4 57777999999999 899999999998888764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.61 Score=42.23 Aligned_cols=132 Identities=8% Similarity=-0.070 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHhcC-----CCCCcCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCC
Q 023425 65 IPLLKTAKENFEL-ALEADNSNTHARYWLSKLHLKY-----HVPGACKAMGAALLVDAANMG-DPDAQYELGCRLRVEND 137 (282)
Q Consensus 65 ~~~~~~A~~~~~~-a~~~~~g~~~a~~~Lg~~~~~~-----~~~~~~~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~g~~ 137 (282)
++|.++|+.++.. .....+.+|+.+-.+|.+|-.. .......++|+.||+++.+.. +.-+-.|++.++.--+.
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGH 274 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCC
Confidence 7899999999999 4446677899999999997633 122345799999999998653 44556677766654332
Q ss_pred CcCCHHHHHHHH----HHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHH
Q 023425 138 YVQSDQQAFYYI----EKAVDQL---HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAI 198 (282)
Q Consensus 138 ~~~d~~~A~~~~----~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~ 198 (282)
...+-.+..+.- ....+.| ...-++..|..+.-. ...+|+++|.++++++.... +.+++
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~-vL~~d~~ka~~a~e~~~~l~-~~~W~ 340 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEAS-VLAGDYEKAIQAAEKAFKLK-PPAWE 340 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH-HHcCCHHHHHHHHHHHhhcC-Ccchh
Confidence 222222322222 1122222 233344444333222 22688999999999998774 44443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.051 Score=30.50 Aligned_cols=29 Identities=14% Similarity=-0.088 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 194 AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 194 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.+++.+|.+|+. .+++++|+.+|++++.
T Consensus 1 a~~~~~lg~~~~~----~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ----LGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Confidence 4678889999988 7777766666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.7 Score=41.27 Aligned_cols=204 Identities=9% Similarity=-0.062 Sum_probs=112.0
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
-.+++++|..-..+-+... +.+....+|......-...|++|.+.-++-.....++ .-.|.=+.|.+..+ ..++
T Consensus 24 ~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrln----k~De 97 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLN----KLDE 97 (652)
T ss_pred cchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcc----cHHH
Confidence 3556777776666655433 3344455555455555566777764433322111111 11134455555543 3477
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 109 GAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPG--ALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 109 A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~--A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
|+..++ .++..+.....--|.+++..+ ++++|+..|+.-++.+..+ ........-.- ......+.+
T Consensus 98 alk~~~-~~~~~~~~ll~L~AQvlYrl~----~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~~~~q 165 (652)
T KOG2376|consen 98 ALKTLK-GLDRLDDKLLELRAQVLYRLE----RYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQVQLLQ 165 (652)
T ss_pred HHHHHh-cccccchHHHHHHHHHHHHHh----hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhHHHHH
Confidence 777777 555555556666666666633 3488888888877764332 22222211100 001111222
Q ss_pred HH--HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHch---------------------hchh--ccCCCHH
Q 023425 187 RA--SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARA---------------------NLES--NLMNPVE 241 (282)
Q Consensus 187 ~A--~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~---------------------~lg~--~~~~~~~ 241 (282)
.. ...++-+.+||.+..+.. .+++.+|++.+++|...+.- .|.+ -..|+.+
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~----~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIE----NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 21 113567789999999998 88999999999999442111 1222 2677788
Q ss_pred HHHHHHHHHHHhc
Q 023425 242 KAKEQFEVAAQAG 254 (282)
Q Consensus 242 ~A~~~~~~Aa~~g 254 (282)
+|...|..-+...
T Consensus 242 ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 242 EASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhc
Confidence 8888777766655
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.052 Score=30.64 Aligned_cols=29 Identities=14% Similarity=-0.020 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 194 AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 194 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.+++++|.+|.. .+++++|+.+|++|++
T Consensus 1 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 1 AEAYYNLGNAYFQ----LGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----hCCchHHHHHHHHHHH
Confidence 4678888998888 7777766666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.05 E-value=2.5 Score=40.71 Aligned_cols=202 Identities=12% Similarity=-0.012 Sum_probs=121.3
Q ss_pred hhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhH-H--HHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH-H--
Q 023425 15 ALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKE-V--DRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTH-A-- 88 (282)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~-a-- 88 (282)
+.|.++..-..--+..++.+.|...+.++...-.. + -..+....+.......+++.|++..++|.-. |..+. .
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~y 463 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYY 463 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhh
Confidence 34444444455555678889999999988653221 1 1222233334444557899999999999843 44444 1
Q ss_pred ----------------HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 023425 89 ----------------RYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIE 150 (282)
Q Consensus 89 ----------------~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~ 150 (282)
|-.+..+...-+ -.+.....|.+.+++ -.|.--.|.|+.+.+-..+ +++++.|+
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~g----tfestk~vYdriidLriaTPqii~NyAmfLEeh~yf----eesFk~YE 535 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLG----TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF----EESFKAYE 535 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH----HHHHHHHH
Confidence 111122211111 124445557777655 4788888999988874444 99999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC----CCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 151 KAVDQLHPGALYLLGTVYLTG----DCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 151 kAa~~g~~~A~~~Lg~~y~~g----~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.+..=..+-.+.|-..|+.. .| ...++.|..+|++|++.=.|..+-.+=..|..-..--+=...|+..|++|..
T Consensus 536 rgI~LFk~p~v~diW~tYLtkfi~ryg-g~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 536 RGISLFKWPNVYDIWNTYLTKFIKRYG-GTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999885455556666665532 11 4668999999999999645544333333333210001334567888888865
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.92 E-value=2.7 Score=40.01 Aligned_cols=171 Identities=12% Similarity=0.077 Sum_probs=99.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHH--HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVD--RVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
.+.|++|+.++.+--....... ....||. ...+..++|++.++ . .++.++.....-+.+++.. .+++
T Consensus 59 ~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~----Yrlnk~Dealk~~~-~--~~~~~~~ll~L~AQvlYrl----~~yd 127 (652)
T KOG2376|consen 59 LDKYEDALKLIKKNGALLVINSFFFEKAYCE----YRLNKLDEALKTLK-G--LDRLDDKLLELRAQVLYRL----ERYD 127 (652)
T ss_pred hhHHHHHHHHHHhcchhhhcchhhHHHHHHH----HHcccHHHHHHHHh-c--ccccchHHHHHHHHHHHHH----hhHH
Confidence 6779999977665332111111 1222332 12345899999998 3 4666666666666665544 4779
Q ss_pred HHHHHHHHHHhCCCHH--HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 108 MGAALLVDAANMGDPD--AQYELGCRLRVENDYVQSDQQAFYYIEKAVD--QLHPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 108 ~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~--~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
+|+..|+.-++.+..+ .......+-.. . ....+|.+...+ .+.-+-+||.+.++.. .+++.+|++
T Consensus 128 ealdiY~~L~kn~~dd~d~~~r~nl~a~~-a------~l~~~~~q~v~~v~e~syel~yN~Ac~~i~----~gky~qA~e 196 (652)
T KOG2376|consen 128 EALDIYQHLAKNNSDDQDEERRANLLAVA-A------ALQVQLLQSVPEVPEDSYELLYNTACILIE----NGKYNQAIE 196 (652)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHH-H------hhhHHHHHhccCCCcchHHHHHHHHHHHHh----cccHHHHHH
Confidence 9999999998765433 32222221110 0 111112332222 2566778888888888 788899998
Q ss_pred HHHHHHH-------cCC----------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 184 CFHRASE-------KGH----------AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 184 ~~~~A~~-------~g~----------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+++|.. .++ ......|+.++.. .+.-.+|...|...+.
T Consensus 197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~----~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL----QGQTAEASSIYVDIIK 252 (652)
T ss_pred HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH----hcchHHHHHHHHHHHH
Confidence 8888822 111 1234556666665 6677777777776655
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.18 Score=42.50 Aligned_cols=90 Identities=17% Similarity=0.051 Sum_probs=59.4
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRV 134 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~ 134 (282)
..|+.+.+++.+..|+..|.+|+-.+|..+.-+-+-+.+|... ++++....--++|.+. +...++|.||..+..
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~----~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL----KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh----hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 3445555666677777777777777777666666666666653 4556666666666643 456777777777777
Q ss_pred CCCCcCCHHHHHHHHHHHHH
Q 023425 135 ENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~ 154 (282)
..++ +.|+..+.+|-.
T Consensus 91 s~~~----~eaI~~Lqra~s 106 (284)
T KOG4642|consen 91 SKGY----DEAIKVLQRAYS 106 (284)
T ss_pred hccc----cHHHHHHHHHHH
Confidence 4444 777777777744
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.088 Score=44.27 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=68.3
Q ss_pred chhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC
Q 023425 22 NQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV 101 (282)
Q Consensus 22 ~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~ 101 (282)
.++..+.+..+++.|+.-|.+++...+ .....+-+...-+...++++....--++|++++|+...++|.||.......
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP-~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~- 92 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINP-TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK- 92 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCC-CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc-
Confidence 345667778999999999999987433 222222111111222567899999999999999999999999999998774
Q ss_pred CCcCHHHHHHHHHHHHh
Q 023425 102 PGACKAMGAALLVDAAN 118 (282)
Q Consensus 102 ~~~~~~~A~~~~~~Aa~ 118 (282)
.+++|+..+.+|-+
T Consensus 93 ---~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 93 ---GYDEAIKVLQRAYS 106 (284)
T ss_pred ---cccHHHHHHHHHHH
Confidence 45999999999954
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.9 Score=33.50 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---C--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---
Q 023425 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---L--HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--- 192 (282)
Q Consensus 121 ~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---g--~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--- 192 (282)
.+..++.-|.-.+. ..++.+|++.|+..-.. | -..|+..|+..|+. .+++++|+.-+++=+...
T Consensus 9 ~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC
Confidence 44556666665665 44557777777776654 2 36777888888887 788888888887776652
Q ss_pred --CHHHHHHHHHHHHc
Q 023425 193 --HAGAAIAYGSLLLR 206 (282)
Q Consensus 193 --~~~a~~~Lg~~y~~ 206 (282)
-+.|+|..|.+++.
T Consensus 81 p~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYE 96 (142)
T ss_pred CCccHHHHHHHHHHHH
Confidence 35677777777765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.25 E-value=4.2 Score=37.01 Aligned_cols=155 Identities=10% Similarity=-0.120 Sum_probs=93.3
Q ss_pred hhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHhcCCCCCcC
Q 023425 27 RWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYW-LSKLHLKYHVPGAC 105 (282)
Q Consensus 27 ~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~-Lg~~~~~~~~~~~~ 105 (282)
-.+.|+++.|..-|.-.+. ..+.-.....+....-...++.+.|..|-+.|.+.-|.-+.|.-. |...+.. .|
T Consensus 130 al~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~-----gd 203 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA-----GD 203 (531)
T ss_pred HHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc-----CC
Confidence 3458888988888876554 333222222222222334577899999999998888888777665 4444544 48
Q ss_pred HHHHHHHHHHHHhC---CCHHHHHHHHHHHhc--CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCH
Q 023425 106 KAMGAALLVDAANM---GDPDAQYELGCRLRV--ENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDI 178 (282)
Q Consensus 106 ~~~A~~~~~~Aa~~---g~~~A~~~Lg~~y~~--g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~ 178 (282)
++.|+++....-.. +-..+--.-+.++-- +..+.-|...|...-..+.++ +.+.+-..-+..++. .++.
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~----d~~~ 279 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR----DGNL 279 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh----ccch
Confidence 88888887665321 111111111111110 112244567788777777776 677777777777777 6777
Q ss_pred HHHHHHHHHHHHc
Q 023425 179 ASALWCFHRASEK 191 (282)
Q Consensus 179 ~~A~~~~~~A~~~ 191 (282)
.++-..++.+=+.
T Consensus 280 rKg~~ilE~aWK~ 292 (531)
T COG3898 280 RKGSKILETAWKA 292 (531)
T ss_pred hhhhhHHHHHHhc
Confidence 7777777766443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.1 Score=30.12 Aligned_cols=26 Identities=15% Similarity=-0.035 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 196 AAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 196 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
|+.+||.+|.. .+++++|+.+|+++.
T Consensus 1 al~~Lg~~~~~----~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQ----QGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHH----CT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 56789999988 788888777777754
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.079 Score=29.41 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+|++++|.+|.. .+++++|+..|++.++.
T Consensus 1 ~a~~~~a~~~~~----~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYK----LGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHH----HCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----ccCHHHHHHHHHHHHHH
Confidence 466777777777 67777777777776553
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.2 Score=43.17 Aligned_cols=60 Identities=15% Similarity=0.041 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhc
Q 023425 71 AKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRV 134 (282)
Q Consensus 71 A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~ 134 (282)
|..||++|+...|+++..++.||.++... ++.-.|+.||-+|. +..++.|..||..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~----~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ----GDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHT----T-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccc----cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999865 57789999999997 55678999999998877
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.91 E-value=2.5 Score=37.87 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHHhhhhhH----HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcC
Q 023425 30 HSRNKKAMELIAKGWSALKE----VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGAC 105 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~ 105 (282)
..++..|+.++.-......+ .+....+|... .+|+++|...|+-+.+.+..+++...+|+.++... +.
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh----LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL----g~ 106 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH----LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL----GQ 106 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh----hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH----HH
Confidence 34577787776655443322 22333444322 56799999999999876666777788888776644 23
Q ss_pred HHHHHHHHHHH
Q 023425 106 KAMGAALLVDA 116 (282)
Q Consensus 106 ~~~A~~~~~~A 116 (282)
+.+|...-.+|
T Consensus 107 Y~eA~~~~~ka 117 (557)
T KOG3785|consen 107 YIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHhhC
Confidence 45555444444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.82 E-value=3.8 Score=34.99 Aligned_cols=150 Identities=18% Similarity=0.109 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHhcCCCCCcCHHHH
Q 023425 33 NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNT---HARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~---~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
..-+.+||.+|+..+.. +|+++|++.|+......|..| .++..|+..+... .+++.|
T Consensus 31 ~~p~~~LY~~g~~~L~~----------------gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~----~~y~~A 90 (254)
T COG4105 31 NLPASELYNEGLTELQK----------------GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN----GEYDLA 90 (254)
T ss_pred CCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc----ccHHHH
Confidence 44677888888775544 349999999999987666654 5788888888866 678999
Q ss_pred HHHHHHHHh--CCC---HHHHHHHHHHHhcCCC-CcCCH---HHHHHHHHHHHHc--C---------------CHHHH--
Q 023425 110 AALLVDAAN--MGD---PDAQYELGCRLRVEND-YVQSD---QQAFYYIEKAVDQ--L---------------HPGAL-- 161 (282)
Q Consensus 110 ~~~~~~Aa~--~g~---~~A~~~Lg~~y~~g~~-~~~d~---~~A~~~~~kAa~~--g---------------~~~A~-- 161 (282)
+....+=+. +++ .-++|..|..++.+.. +..|. ..|+.-|+..+.. + +.-|.
T Consensus 91 ~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 91 LAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 999998875 344 4577778888777653 45554 3455555555543 1 11222
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHc
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEK-----GHAGAAIAYGSLLLR 206 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----g~~~a~~~Lg~~y~~ 206 (282)
..+|..|+. .+.+--|+..++..+++ -..+|+..|...|+.
T Consensus 171 m~IaryY~k----r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~ 216 (254)
T COG4105 171 MAIARYYLK----RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA 216 (254)
T ss_pred HHHHHHHHH----hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 234666766 67777777777777765 125567777777765
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.63 E-value=4.4 Score=35.16 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.9
Q ss_pred cCCCHHHHHHHHHHHH
Q 023425 236 LMNPVEKAKEQFEVAA 251 (282)
Q Consensus 236 ~~~~~~~A~~~~~~Aa 251 (282)
..++|+.|..||+-|.
T Consensus 258 ~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 258 KAKNYDEAIEWYELAL 273 (278)
T ss_pred hhcCHHHHHHHHHHHH
Confidence 6789999999999775
|
It is also involved in sporulation []. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.17 Score=29.59 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
.++.+||.+|.. .+++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~----~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRA----QGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHH----CT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----hhhcchhhHHHHHHHH
Confidence 466777777777 7777777777777754
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.38 E-value=4.1 Score=35.06 Aligned_cols=128 Identities=16% Similarity=0.041 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
.+++++|++...+.. .-++.-.=-.++... ...+-|.+..++..+-.+-.....|+..+..--......+.
T Consensus 121 ~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~----~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 121 DGDFDEALKALHLGE-----NLEAAALNVQILLKM----HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred CCChHHHHHHHhccc-----hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhh
Confidence 356999988888742 333333223333333 23377777777777766656666688776542211122699
Q ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 023425 145 AFYYIEKAVDQL--HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLL 205 (282)
Q Consensus 145 A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~ 205 (282)
|+.+|+.-++.- .+.-+..++.|... .+++++|...++.|++. ++|+...|+-.+=.
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~----~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~ 252 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQ----LGRYEEAESLLEEALDKDAKDPETLANLIVLAL 252 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHH----hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 999999999853 44455566777777 89999999999999886 57888877765443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.31 E-value=12 Score=39.37 Aligned_cols=178 Identities=12% Similarity=-0.023 Sum_probs=124.8
Q ss_pred ccchHHHHHHHHHHhhhhhH-------HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCC
Q 023425 30 HSRNKKAMELIAKGWSALKE-------VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVP 102 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~ 102 (282)
.++.++|.+....++..++- .-.+.++++-+.+| .-+.-.+.|++|++.. +--..+..|..+|...
T Consensus 1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG---~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~--- 1543 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG---TEESLKKVFERACQYC-DAYTVHLKLLGIYEKS--- 1543 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHh---
Confidence 56678888888888777741 11233444444444 3455667799998653 3345677788889876
Q ss_pred CcCHHHHHHHHHHHHhC-C-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCcc
Q 023425 103 GACKAMGAALLVDAANM-G-DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHPGALYLLGTVYLTGDCVKK 176 (282)
Q Consensus 103 ~~~~~~A~~~~~~Aa~~-g-~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~g~g~~~ 176 (282)
...++|.++|+.-++. + ....|..+|..++....- +.|...+.+|... .|.+-.-.-+.+-+. .+
T Consensus 1544 -ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~----~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk----~G 1614 (1710)
T KOG1070|consen 1544 -EKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA----EAARELLKRALKSLPKQEHVEFISKFAQLEFK----YG 1614 (1710)
T ss_pred -hcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH----HHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh----cC
Confidence 4458999999999864 4 678888899988874443 8888889998875 577777777777776 78
Q ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Q 023425 177 DIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK 227 (282)
Q Consensus 177 d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 227 (282)
|.+++...|+--+..- -.+-|.-+..+-.. ..+.......|++++..
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik----~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK----HGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHc----cCCHHHHHHHHHHHHhc
Confidence 8999988888765543 44455555555444 56777788888888773
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.26 E-value=4.1 Score=33.59 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHcCCCCccc
Q 023425 143 QQAFYYIEKAVDQ---LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK---G---HAGAAIAYGSLLLRGVQVPEC 213 (282)
Q Consensus 143 ~~A~~~~~kAa~~---g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---g---~~~a~~~Lg~~y~~g~g~~~~ 213 (282)
+.|+.-|.++-.. ..++-++.||..|.. .|.++++..+.++++. + +++....|+.+|.. .++
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-----rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~----~~~ 193 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTK-----RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK----LKN 193 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----hcc
Confidence 7788888877655 578888999988875 8899999999998774 2 57888889999988 788
Q ss_pred HHHHHHHH
Q 023425 214 LTKLNAKR 221 (282)
Q Consensus 214 ~~~A~~~~ 221 (282)
++.|..|-
T Consensus 194 ~e~AYiwa 201 (203)
T PF11207_consen 194 YEQAYIWA 201 (203)
T ss_pred hhhhhhhe
Confidence 88887663
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.19 E-value=4.1 Score=35.14 Aligned_cols=141 Identities=6% Similarity=-0.031 Sum_probs=97.8
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH----hCC----CHH
Q 023425 53 VIDYCELNDRRLIPLLKTAKENFELALEAD-NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA----NMG----DPD 123 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa----~~g----~~~ 123 (282)
.+.|++.+-+.-.+.+.-....+.+.++.+ +.+|.-.-.||.+-.+- .|.+.|..+|++.- ..+ ..-
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~----GD~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQI----GDIKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence 444555444455566888888888888876 66788888899988765 46688888887432 221 222
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC-----HHH
Q 023425 124 AQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH-----AGA 196 (282)
Q Consensus 124 A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~-----~~a 196 (282)
-.-+.+.+|.- .+|+..|...|.+..+. .++.+-.+-+.|... .++...|++-.+.+.++.. ...
T Consensus 254 V~~n~a~i~lg----~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY----lg~l~DAiK~~e~~~~~~P~~~l~es~ 325 (366)
T KOG2796|consen 254 VLMNSAFLHLG----QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY----LGKLKDALKQLEAMVQQDPRHYLHESV 325 (366)
T ss_pred HHhhhhhheec----ccchHHHHHHHhhccccCCCchhhhchHHHHHHH----HHHHHHHHHHHHHHhccCCccchhhhH
Confidence 33344555554 56668999999888877 467777788888777 8899999999999988643 334
Q ss_pred HHHHHHHHH
Q 023425 197 AIAYGSLLL 205 (282)
Q Consensus 197 ~~~Lg~~y~ 205 (282)
.+||-.+|+
T Consensus 326 ~~nL~tmyE 334 (366)
T KOG2796|consen 326 LFNLTTMYE 334 (366)
T ss_pred HHHHHHHHH
Confidence 556766665
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.22 Score=27.87 Aligned_cols=28 Identities=11% Similarity=-0.086 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+++.+|.+|.. .+++++|..+|+++.+
T Consensus 2 ~~~~~lg~~y~~----~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQ----LGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHH----TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 567888888888 7777777777766654
|
... |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.91 Score=37.94 Aligned_cols=57 Identities=19% Similarity=0.047 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCccCH-------HHHHHHHHHHHHcC--------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 160 ALYLLGTVYLTGDCVKKDI-------ASALWCFHRASEKG--------HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 160 A~~~Lg~~y~~g~g~~~d~-------~~A~~~~~~A~~~g--------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
.+..|+.+|.. .+|. .+|+.+|.+|.+.. ....+|.+|.++.. .+++++|..||.+.
T Consensus 120 l~LrlAWlyR~----~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~v 191 (214)
T PF09986_consen 120 LCLRLAWLYRD----LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHH
Confidence 34456666665 4443 34555555554432 13456777777776 55555544444444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=92.88 E-value=1.1 Score=39.10 Aligned_cols=114 Identities=15% Similarity=0.060 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc-CCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLK-YHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~-~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
.++.|...|++|.+..+-....+...+.+-+. + .|.+.|.+.|+.+++. .+++-+......+.. ..|.+
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~----~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~----~~d~~ 87 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCN----KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK----LNDIN 87 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC----S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----TT-HH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hCcHH
Confidence 38999999999986555567788888888443 3 5667799999999864 566777777777766 34569
Q ss_pred HHHHHHHHHHHc-CCHH---HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 144 QAFYYIEKAVDQ-LHPG---ALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 144 ~A~~~~~kAa~~-g~~~---A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.|...|++++.. .... ..+..-.-|+. .-||.+...+..+++.+.
T Consensus 88 ~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~---~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 88 NARALFERAISSLPKEKQSKKIWKKFIEFES---KYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH---HHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH
Confidence 999999999876 2222 12222222222 145677777777776553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.83 E-value=3.7 Score=31.91 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC---C--CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM---G--DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--- 155 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~---g--~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--- 155 (282)
..+..+|.-|.-.... +++.+|++.|+.--.. | ...|...|+..|+. ..++++|+.-+++-+++
T Consensus 8 ~~~~~ly~~a~~~l~~----~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 8 KSPQELYQEAQEALQK----GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred CCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCC
Confidence 3455666666665544 5678888887776532 1 45788888888888 45558888888888887
Q ss_pred --CCHHHHHHHHHHHhc
Q 023425 156 --LHPGALYLLGTVYLT 170 (282)
Q Consensus 156 --g~~~A~~~Lg~~y~~ 170 (282)
.-+.|++..|.++..
T Consensus 80 hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYE 96 (142)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 346777888877665
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.5 Score=36.23 Aligned_cols=85 Identities=12% Similarity=-0.050 Sum_probs=47.9
Q ss_pred CchhhHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC
Q 023425 63 RLIPLLKTAKENFELALEADNSNTH-----ARYWLSKLHLKYHVPGACKAMGAALLVDAANMG--DPDAQYELGCRLRVE 135 (282)
Q Consensus 63 ~~~~~~~~A~~~~~~a~~~~~g~~~-----a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~g 135 (282)
...+++++|..-|..|+++-|..+. .+.+-|.++... ..++.|+.-..+|++.+ +..|...-+..|...
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl----~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL----RKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh----hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 3344566777777777665554433 222333344433 34466666666776654 455666666666663
Q ss_pred CCCcCCHHHHHHHHHHHHHc
Q 023425 136 NDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~ 155 (282)
.-++.|+.=|++..+.
T Consensus 182 ----ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 ----EKYEEALEDYKKILES 197 (271)
T ss_pred ----hhHHHHHHHHHHHHHh
Confidence 3336777777776665
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.1 Score=40.13 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=55.3
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCC--HHHHHHHHHHHhcCCCC
Q 023425 62 RRLIPLLKTAKENFELALEADNSNT-HARYWLSKLHLKYHVPGACKAMGAALLVDAANMGD--PDAQYELGCRLRVENDY 138 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g~~-~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~g~~~ 138 (282)
.....|++-|+..++-....+..-. ....++|.++... +|+++|..-|+-+-+..+ .+-..+|+.+++.-+.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL----gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~- 106 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL----GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ- 106 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh----ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-
Confidence 3446788888888877754433222 4566778888876 677888888887776554 4456677777666333
Q ss_pred cCCHHHHHHHHHHHHH
Q 023425 139 VQSDQQAFYYIEKAVD 154 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~ 154 (282)
+.+|...-.+|.+
T Consensus 107 ---Y~eA~~~~~ka~k 119 (557)
T KOG3785|consen 107 ---YIEAKSIAEKAPK 119 (557)
T ss_pred ---HHHHHHHHhhCCC
Confidence 3677666666554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.14 E-value=5.4 Score=34.04 Aligned_cols=154 Identities=13% Similarity=-0.002 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh---CC-----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN---MG-----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~---~g-----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
|-+..+..-+..|.+. +++++|...+++|++ .+ -+.++-..+++..+ .+-+.++..+|+||+..
T Consensus 29 gaas~yekAAvafRnA----k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake----~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNA----KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE----LSKLSEVVDLYEKASEL 100 (308)
T ss_pred hhHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHH
Confidence 3455566667777765 677999999999984 22 12345555566555 44459999999999875
Q ss_pred ----CCHHH----HHHHHHHHhcCCCCccCHHHHHHHHHHHHH---cCC--HHH---HHHHHHHHHcCCCCcccHHHHHH
Q 023425 156 ----LHPGA----LYLLGTVYLTGDCVKKDIASALWCFHRASE---KGH--AGA---AIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 156 ----g~~~A----~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~g~--~~a---~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
|.|+. .-.-|.+..+ .++++|+.+|++++. .++ ..+ +-..+.++.. -+.+++|-.
T Consensus 101 Y~E~GspdtAAmaleKAak~len-----v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~ 171 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALEN-----VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAAT 171 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHH
Confidence 65543 3445566654 899999999999865 232 222 2333444544 344555555
Q ss_pred HHHHHHHH-----Hchhch---------hccCCCHHHHHHHHHHHHHhc
Q 023425 220 KRVSAAKK-----ARANLE---------SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 220 ~~~~a~~~-----a~~~lg---------~~~~~~~~~A~~~~~~Aa~~g 254 (282)
.+.+-... ++..-+ .....|+..|.+.|+.....+
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 55554442 111122 124458999999999998876
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.09 E-value=2.4 Score=34.68 Aligned_cols=115 Identities=16% Similarity=0.087 Sum_probs=82.7
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CCHHHHHHHHHH
Q 023425 57 CELNDRRLIPLLKTAKENFELALE-ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM----GDPDAQYELGCR 131 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~-~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~~~A~~~Lg~~ 131 (282)
..++..-..+++.+|..+|++++. .--+++..+..|+...... ++...|...+++--+. ..|+.+.-+|..
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~----~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI----QEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh----ccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 444455556779999999999985 1225666666666666644 5678899999888764 368889999999
Q ss_pred HhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 132 LRVENDYVQSDQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 132 y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
|..++.. .+|..-|+.++.- ..+.+-..-+.++.. .++..+|..
T Consensus 170 laa~g~~----a~Aesafe~a~~~ypg~~ar~~Y~e~La~----qgr~~ea~a 214 (251)
T COG4700 170 LAAQGKY----ADAESAFEVAISYYPGPQARIYYAEMLAK----QGRLREANA 214 (251)
T ss_pred HHhcCCc----hhHHHHHHHHHHhCCCHHHHHHHHHHHHH----hcchhHHHH
Confidence 9987776 7788888888876 667777777777776 454444433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.64 E-value=1.5 Score=36.04 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHh---CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHhcCCCCc
Q 023425 105 CKAMGAALLVDAAN---MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---L---HPGALYLLGTVYLTGDCVK 175 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---g---~~~A~~~Lg~~y~~g~g~~ 175 (282)
..+.|.+-|.++-. ..+++-++.||..|. ..|.++++.++.++.+. + +|+-...|+.+|.. .
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-----krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~----~ 191 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-----KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK----L 191 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----h
Confidence 44888888888763 468999999999887 67789999999999886 3 58888899999998 8
Q ss_pred cCHHHHHHH
Q 023425 176 KDIASALWC 184 (282)
Q Consensus 176 ~d~~~A~~~ 184 (282)
+++++|.-|
T Consensus 192 ~~~e~AYiw 200 (203)
T PF11207_consen 192 KNYEQAYIW 200 (203)
T ss_pred cchhhhhhh
Confidence 889888766
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.43 Score=41.76 Aligned_cols=61 Identities=18% Similarity=0.085 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGC 130 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~ 130 (282)
++.++|...|+-|+.++|.+|++...+|.+.+.. .+.-+|-++|.+|. .+|+.+|..+-..
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~----~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMH----NEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh----hhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4589999999999999999999999999998855 45688889999985 7899999877654
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.25 Score=26.11 Aligned_cols=29 Identities=41% Similarity=0.527 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.+++.+|.+|.. .+++++|+.+|++++..
T Consensus 2 ~~~~~~a~~~~~----~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLK----LGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHH----HhhHHHHHHHHHHHHcc
Confidence 456677777777 77777777777777653
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=90.88 E-value=2.5 Score=35.31 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcC--------CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 142 DQQAFYYIEKAVDQL--------HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 142 ~~~A~~~~~kAa~~g--------~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
..+|+++|.+|.+.. ....++.+|.++.. .+++++|..||.+.+..+.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcCCC
Confidence 367888888887652 24677889999888 8999999999999987653
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.51 E-value=4.4 Score=33.24 Aligned_cols=88 Identities=13% Similarity=0.088 Sum_probs=48.2
Q ss_pred ccCHHHHHHHHHHHHHcC-C----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhc-----h--hccCCCHHH
Q 023425 175 KKDIASALWCFHRASEKG-H----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANL-----E--SNLMNPVEK 242 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~~g-~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~l-----g--~~~~~~~~~ 242 (282)
.+++++|..-++.+..+. + +-+..+|+.+... .+.++.|..-+.--.+.+|..+ | .+..+|.++
T Consensus 102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 455555555555554321 1 3344555555555 4555555554444444333321 2 336677889
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Q 023425 243 AKEQFEVAAQAGCNLGLRWLQRIE 266 (282)
Q Consensus 243 A~~~~~~Aa~~g~~~a~~~l~~l~ 266 (282)
|+.-|++|.+.+...+...+-.++
T Consensus 178 Ar~ay~kAl~~~~s~~~~~~lqmK 201 (207)
T COG2976 178 ARAAYEKALESDASPAAREILQMK 201 (207)
T ss_pred HHHHHHHHHHccCChHHHHHHHhH
Confidence 999999999986555544444443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.53 Score=25.86 Aligned_cols=28 Identities=7% Similarity=-0.157 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+|++++|.+|.. .+++++|...|++.+.
T Consensus 1 ~a~~~~a~~~~~----~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 1 DALYRLARCYYK----LGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHH----HCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence 478999999998 7788877777766653
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.24 E-value=1.1 Score=39.69 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=70.9
Q ss_pred hhhhhcccchHHHHHHHHHHhhhh---hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCC
Q 023425 24 HQKRWLHSRNKKAMELIAKGWSAL---KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYH 100 (282)
Q Consensus 24 ~~~~~~~~~~~~A~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~ 100 (282)
+.....+++|+.|.+.|.+|+... .....+.+.+........+|+..|+.=-.+|+..+|.|..|++.=+.++...
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL- 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL- 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH-
Confidence 344556888999999999998743 3556666666666666678899999999999999999999999999888765
Q ss_pred CCCcCHHHHHHHHHHHHh
Q 023425 101 VPGACKAMGAALLVDAAN 118 (282)
Q Consensus 101 ~~~~~~~~A~~~~~~Aa~ 118 (282)
...+.|..|.+...+
T Consensus 167 ---e~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 167 ---ERFAEAVNWCEEGLQ 181 (390)
T ss_pred ---HHHHHHHHHHhhhhh
Confidence 344778888877754
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.76 E-value=1.5 Score=25.31 Aligned_cols=29 Identities=10% Similarity=-0.130 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 194 AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 194 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
..++.+||.+|.. .+++++|..+++++..
T Consensus 2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRA----QGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHH----CT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----hhhcchhhHHHHHHHH
Confidence 4678899999998 7888888888877765
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.00 E-value=20 Score=31.36 Aligned_cols=125 Identities=14% Similarity=-0.002 Sum_probs=79.6
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH-hCCCHHHHHHHH--HH
Q 023425 55 DYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA-NMGDPDAQYELG--CR 131 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa-~~g~~~A~~~Lg--~~ 131 (282)
.+..+......+++.+|...|..+.+..|.++++-..|+.+|...+ +.+.|...+...- +..+..++---+ .+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g----~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAG----DVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcC----ChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3344445555678999999999999999999999999999999763 4477776666532 222222222111 11
Q ss_pred HhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 132 LRVENDYVQSDQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 132 y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+..-... .+....-.+.+.. ++.++.+.|+..|.. .++.+.|++.+-.-+..
T Consensus 213 l~qaa~~----~~~~~l~~~~aadPdd~~aa~~lA~~~~~----~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 213 LEQAAAT----PEIQDLQRRLAADPDDVEAALALADQLHL----VGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHhcC----CCHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 2121111 2222333333333 788888889988888 88888888877665554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=86.09 E-value=13 Score=28.35 Aligned_cols=45 Identities=16% Similarity=0.035 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDA 116 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~A 116 (282)
+++|+.++++++..+|-+..++..|-.+|... ++...|+..|++.
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~----g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQ----GRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT----T-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC----cCHHHHHHHHHHH
Confidence 44555555555555555444444444444433 2334444444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=85.93 E-value=3.1 Score=32.05 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=53.3
Q ss_pred hhhhhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhh-hhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC
Q 023425 7 KASTLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWS-ALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN 85 (282)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~ 85 (282)
+.++.++-+.+++.|.+.. +..+-+..+..-.+ +-+.......|...-++...++++++.++....++.+|++
T Consensus 31 s~~s~f~lAwaLV~S~~~~------dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTE------DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hHHHHHHHHHHHHcccchH------HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 3456666777777775532 35566666666553 3444455556666667777888999999999999988888
Q ss_pred HHHHH
Q 023425 86 THARY 90 (282)
Q Consensus 86 ~~a~~ 90 (282)
++|.-
T Consensus 105 ~Qa~~ 109 (149)
T KOG3364|consen 105 RQALE 109 (149)
T ss_pred HHHHH
Confidence 87764
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=85.13 E-value=6.4 Score=30.35 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHH
Q 023425 155 QLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAY 200 (282)
Q Consensus 155 ~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~L 200 (282)
.-+|+-.+.||..|.. .++..++-+.+++|++.|-.+|+.++
T Consensus 117 ~~~p~~L~kia~Ay~k----lg~~r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 117 EINPEFLVKIANAYKK----LGNTREANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp -S-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----hcchhhHHHHHHHHHHhchHHHHHHh
Confidence 3578888999999999 89999999999999999999999775
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.01 E-value=1.1 Score=23.68 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
.+.+.||.++.. .+|+++|..+++
T Consensus 2 ~a~~~la~~~~~----~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLA----QGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHh
Confidence 355666666666 666777666654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.82 E-value=1.3 Score=22.98 Aligned_cols=27 Identities=15% Similarity=-0.015 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
.+++++|.+|.. .++++.|..++++++
T Consensus 2 ~~~~~~a~~~~~----~~~~~~a~~~~~~~~ 28 (34)
T smart00028 2 EALYNLGNAYLK----LGDYDEALEYYEKAL 28 (34)
T ss_pred hHHHHHHHHHHH----HhhHHHHHHHHHHHH
Confidence 456778888877 667766666665554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.74 E-value=30 Score=34.15 Aligned_cols=39 Identities=23% Similarity=0.188 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-LHPGALYLL 164 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~~~L 164 (282)
-+|..++|..+.+ ...++.|.+||.+.-.. +..++++.|
T Consensus 796 e~A~r~ig~~fa~----~~~We~A~~yY~~~~~~e~~~ecly~l 835 (1189)
T KOG2041|consen 796 EDAFRNIGETFAE----MMEWEEAAKYYSYCGDTENQIECLYRL 835 (1189)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 4566666666655 55566677777666544 444444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.56 E-value=11 Score=30.45 Aligned_cols=58 Identities=14% Similarity=-0.063 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 123 DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-----HPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 123 ~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
.++..+|..|..-+ |.+.|+++|.++-+-- ..+.++++-.+... .+|+.....+..+|
T Consensus 37 ~~~~~l~~~~~~~G----d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 37 MALEDLADHYCKIG----DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHhh----hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHH
Confidence 56666666666633 3367777776655431 12333333333333 45666666666665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=84.56 E-value=4.1 Score=28.92 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC
Q 023425 72 KENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM 119 (282)
Q Consensus 72 ~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~ 119 (282)
+.-++++++.+|+++.+.+.|+..+... .+++.|+..+...++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~----g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAA----GDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHT----T-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh
Confidence 4457788888999999999999998866 5678888888888754
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=84.06 E-value=2.5 Score=36.30 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=39.8
Q ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 109 GAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 109 A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
|..||.+|+ .+++...++.||.+... ..|.=.|+.||-++.-- ..+.|..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~----~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY----QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH----TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc----ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 567888886 46777888888888777 44557888888887643 567777777777654
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.86 E-value=1.3 Score=38.88 Aligned_cols=83 Identities=17% Similarity=0.088 Sum_probs=57.8
Q ss_pred hhhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHH
Q 023425 9 STLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHA 88 (282)
Q Consensus 9 ~~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a 88 (282)
++-+..+++.+. ........|..++|+.+|..++. +..........+|.....-+++-+|-.+|-+|+..+|++.+|
T Consensus 110 pa~~kEA~~Al~--~A~~~~~~Gk~ekA~~lfeHAla-laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 110 PAKVKEAILALK--AAGRSRKDGKLEKAMTLFEHALA-LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred chhhHHHHHHHH--HHHHHHhccchHHHHHHHHHHHh-cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 334444555443 33344568889999999999886 443334444555554444578999999999999999999999
Q ss_pred HHHHHH
Q 023425 89 RYWLSK 94 (282)
Q Consensus 89 ~~~Lg~ 94 (282)
..+-..
T Consensus 187 LvnR~R 192 (472)
T KOG3824|consen 187 LVNRAR 192 (472)
T ss_pred Hhhhhc
Confidence 886543
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.23 E-value=2.7 Score=37.16 Aligned_cols=90 Identities=18% Similarity=0.106 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH----cC----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH--
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASE----KG----HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-- 227 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~----~g----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 227 (282)
.+|+.+.+..|-. -+|.+.|++|+++..+ .| -.....+||.+|..-.-+.+.+++|...+++..+.
T Consensus 104 ~ea~~~kaeYycq----igDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 104 REAMLRKAEYYCQ----IGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 5677778888877 7888888888776644 33 35677888888888777888888888888888652
Q ss_pred -----HchhchhccCCCHHHHHHHHHHHH
Q 023425 228 -----ARANLESNLMNPVEKAKEQFEVAA 251 (282)
Q Consensus 228 -----a~~~lg~~~~~~~~~A~~~~~~Aa 251 (282)
.+.-+=.+.-.|+.+|-..|.-+.
T Consensus 180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 180 RNRLKVYQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 111111334456666665555443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.72 E-value=17 Score=30.21 Aligned_cols=94 Identities=13% Similarity=-0.054 Sum_probs=62.2
Q ss_pred cCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCC
Q 023425 104 ACKAMGAALLVDAANMG-------DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLTGDCV 174 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g~ 174 (282)
.++++|..-|..|++.- ...-+.|-|..+..... ++.|+.-..||++.+ +..|..+-+..|..
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k----~e~aI~dcsKaiel~pty~kAl~RRAeayek---- 180 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK----WESAIEDCSKAIELNPTYEKALERRAEAYEK---- 180 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh----HHHHHHHHHhhHhcCchhHHHHHHHHHHHHh----
Confidence 46788888888887642 12234455666665333 378888888888874 56777888888888
Q ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023425 175 KKDIASALWCFHRASEKGHAGAAIAYGSLLL 205 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~ 205 (282)
...++.|++=|++..+.....-..+-+.+-.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 7888888888888877654333333333333
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.03 E-value=0.88 Score=40.38 Aligned_cols=86 Identities=16% Similarity=-0.031 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG--DPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++|+.+|-.+++++|+.+.-+..-+.++... +....|++=+..|++.+ ....+-.-|....- ..++.+|
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl----~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl----lg~~e~a 201 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKL----KKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL----LGNWEEA 201 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeec----cCCchhhhhhhhhhccCcccccccchhhHHHHH----hhchHHH
Confidence 89999999999999999888888888888766 34477888888887654 22223333333333 4455888
Q ss_pred HHHHHHHHHcCCHHHH
Q 023425 146 FYYIEKAVDQLHPGAL 161 (282)
Q Consensus 146 ~~~~~kAa~~g~~~A~ 161 (282)
...+..+++.+.-++-
T Consensus 202 a~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 202 AHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHhccccHHH
Confidence 8888888888754444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=81.89 E-value=5.5 Score=34.65 Aligned_cols=111 Identities=11% Similarity=-0.057 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHH
Q 023425 106 KAMGAALLVDAANMG--DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 106 ~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
.+.|-..|++|.+.+ ..+-+...|.+-..- .+|.+.|...|+.+++. .++.-+..-...+.. .+|.+.|
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~---~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~----~~d~~~a 89 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYC---NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK----LNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT---CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----TT-HHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----hCcHHHH
Confidence 589999999998654 456677777773331 34447799999999987 556666555566666 7899999
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 182 LWCFHRASEKGHAGA----AIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 182 ~~~~~~A~~~g~~~a----~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
...|++++..-...- .+.-=.=|+.. -++.+.....+++..+
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~---~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESK---YGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Confidence 999999987632221 22222222222 3466666667766665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=80.90 E-value=2.5 Score=29.27 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=25.3
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALE 80 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 80 (282)
.+.|+.|.+.+.+|++.... ++.++|+.+|+++++
T Consensus 2 k~~~~~A~~~I~kaL~~dE~----------------g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 2 RGYYKQAFEEISKALRADEW----------------GDKEQALAHYRKGLR 36 (79)
T ss_pred chHHHHHHHHHHHHhhhhhc----------------CCHHHHHHHHHHHHH
Confidence 45688999999988763322 347888888888864
|
This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.07 E-value=6.8 Score=35.11 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 127 ELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 127 ~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.-|+-|+..+.+ ++|+.+|.+++.. .++--+.+-+..|+. .+.+..|..=...|+..
T Consensus 102 E~GN~yFKQgKy----~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 102 ERGNTYFKQGKY----EEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIAL 160 (536)
T ss_pred Hhhhhhhhccch----hHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHh
Confidence 345566665555 8888888888876 467777777777777 66666666555555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 282 | ||||
| 2xm6_A | 490 | Crystal Structure Of The Protein Corresponding To L | 4e-05 |
| >pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus C5321 From Cft073 E.Coli Strain Length = 490 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 3e-20
Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 17/215 (7%)
Query: 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAA--LLVDAANMGDPDAQ 125
A E + + A+ N+ +Y+L+ L+ K G K A +A GD AQ
Sbjct: 275 PLKALEWYRKS--AEQGNSDGQYYLAHLYDKG-AEGVAKNREQAISWYTKSAEQGDATAQ 331
Query: 126 YELGCRLRVENDYV-QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWC 184
LG + ++A + KA + A + LG L G VKKD A
Sbjct: 332 ANLGAIY--FRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIW 389
Query: 185 FHRASEKGHAGAAIAYGSLLLRGVQVP-------ECLTKLNAKRVSAAKKARANLESNLM 237
+A+E+G + A + G + G+ V + ++ N+ +
Sbjct: 390 MRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449
Query: 238 NP--VEKAKEQFEVAAQAGCNLGLRWLQRIEEEEK 270
+++A+ + + +Q+++ +
Sbjct: 450 TAKQLQQAELLSQQYIEKYAPEAWARMQKLKAQSA 484
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 3e-16
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 4/144 (2%)
Query: 69 KTAKENFELALEADNSNTHARYWLSKLHLK-YHVPGACKAMGAALLVDAANMGDPDAQYE 127
A + F A A+ T A Y L ++ VP AA G P AQ
Sbjct: 60 TQAMDWFRRA--AEQGYTPAEYVLGLRYMNGEGVPQDYAQ-AVIWYKKAALKGLPQAQQN 116
Query: 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187
LG N ++ + A +Q +G Y GD V +D A + +
Sbjct: 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176
Query: 188 ASEKGHAGAAIAYGSLLLRGVQVP 211
A+E+G+ + G + RG+ V
Sbjct: 177 AAEQGNVWSCNQLGYMYSRGLGVE 200
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 4e-16
Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 2/145 (1%)
Query: 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYE 127
+ + F LA A+ + + + + M AA G+ + +
Sbjct: 131 KAESVKWFRLA--AEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188
Query: 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187
LG ++D + + K+ L +Y G V +D + F +
Sbjct: 189 LGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248
Query: 188 ASEKGHAGAAIAYGSLLLRGVQVPE 212
++E+G++ A G +L +G+ +
Sbjct: 249 SAEQGNSIAQFRLGYILEQGLAGAK 273
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 7e-16
Identities = 30/96 (31%), Positives = 46/96 (47%)
Query: 116 AANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVK 175
A G+ AQ ELG R N+ + QA + +A +Q + A Y+LG Y+ G+ V
Sbjct: 33 KAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVP 92
Query: 176 KDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVP 211
+D A A+ + +A+ KG A G + G V
Sbjct: 93 QDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVK 128
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 8e-10
Identities = 18/72 (25%), Positives = 29/72 (40%)
Query: 140 QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIA 199
+++ + A LG Y G+ KD+ A+ F RA+E+G+ A
Sbjct: 21 ALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYV 80
Query: 200 YGSLLLRGVQVP 211
G + G VP
Sbjct: 81 LGLRYMNGEGVP 92
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-16
Identities = 21/101 (20%), Positives = 42/101 (41%)
Query: 116 AANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVK 175
A ++ + + LG ++ ++A + KA D + +LLG +Y +G V
Sbjct: 32 ACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVS 91
Query: 176 KDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTK 216
++ AL + +A + +A + G + G V K
Sbjct: 92 QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKK 132
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-16
Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)
Query: 68 LKTAKENFELALEADNSNTHARYWLSKLHLK-YHVPGACKAMGAALLVDAANMGDPDAQY 126
A + + A D L ++ V A ++ D D
Sbjct: 94 TNKALQYYSKA--CDLKYAEGCASLGGIYHDGKVVT-RDFKKAVEYFTKACDLNDGDGCT 150
Query: 127 ELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFH 186
LG + ++A +KA D + G +Y G+ K+ AL +
Sbjct: 151 ILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 210
Query: 187 RASEKGHAGAAIAYGSLLLRGVQVPECLTK 216
+A E + G G++ G V +
Sbjct: 211 KACELENGGGCFNLGAMQYNGEGVTRNEKQ 240
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-15
Identities = 17/92 (18%), Positives = 36/92 (39%)
Query: 116 AANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVK 175
A ++ D + G ++ ++A KA + + G + LG + G+ V
Sbjct: 176 ACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVT 235
Query: 176 KDIASALWCFHRASEKGHAGAAIAYGSLLLRG 207
++ A+ F + + G GA L ++
Sbjct: 236 RNEKQAIENFKKGCKLGAKGACDILKQLKIKV 267
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-15
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 120 GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIA 179
DP LG + E D+ QA Y EKA D + LG +Y G V+K++
Sbjct: 4 QDPKELVGLGAKSYKEKDF----TQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLK 59
Query: 180 SALWCFHRASEKGHAGAAIAYGSLLLRGVQVPE 212
A + +A + ++ G+L G V +
Sbjct: 60 KAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQ 92
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 7e-15
Identities = 23/96 (23%), Positives = 35/96 (36%)
Query: 116 AANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVK 175
A ++ + + LG Q+ +A Y KA D + LG +Y G V
Sbjct: 68 ACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 127
Query: 176 KDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVP 211
+D A+ F +A + GSL G P
Sbjct: 128 RDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTP 163
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-15
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 116 AANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVK 175
A GD AQY L DY Q+A Y+ +KA Q AL LL + + +
Sbjct: 12 QAEAGDRRAQYYLADTWVSSGDY----QKAEYWAQKAAAQGDGDALALLAQLKIRNP-QQ 66
Query: 176 KDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVP 211
D A +A E G I +L+
Sbjct: 67 ADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGA 102
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 1e-13
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 116 AANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVK 175
AA GD DA L L++ N QA EKAV+ +L V +
Sbjct: 44 AAAQGDGDALALLAQ-LKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGA 102
Query: 176 KDIASALWCFHRASEKGHAGAAIAY----GSLLLRGVQVPECLTK 216
D+A A+ A+ + AA+ G + GV PE K
Sbjct: 103 TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 142 DQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYG 201
+ ++ + A Y L +++ D A + +A+ +G A
Sbjct: 2 ATEPGSQYQQQAEAGDRRAQYYLADTWVSS----GDYQKAEYWAQKAAAQGDGDALALLA 57
Query: 202 SLLLRG 207
L +R
Sbjct: 58 QLKIRN 63
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 3e-15
Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 23/207 (11%)
Query: 69 KTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYEL 128
TA++N++ A+ + A+ L+ + + P K A AA P AQ L
Sbjct: 20 VTAQQNYQQL--AELGYSEAQVGLADIQVGTRDPAQIKQ--AEATYRAAADTSPRAQARL 75
Query: 129 GCRLRVENDYVQSD-QQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187
G L + +++ +A ++KA L L +YL ++ + +
Sbjct: 76 GRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQIS-Q 134
Query: 188 ASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNL----------M 237
G+ A +A LL R + + AA L
Sbjct: 135 WQAAGYPEAGLAQV-LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPE 193
Query: 238 NPVEKAKEQFEVAAQAG-----CNLGL 259
E +Q E G +
Sbjct: 194 QQAE-LLKQMEAGVSRGTVTAQRVDSV 219
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-14
Identities = 28/145 (19%), Positives = 44/145 (30%), Gaps = 5/145 (3%)
Query: 69 KTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAAL-LVDAANMGDPDAQYE 127
+ E A+ S + A L++ G P +
Sbjct: 196 AELLKQMEAG--VSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVS 253
Query: 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187
L L + + +Q Y++ P A LLG +Y G V D +A F +
Sbjct: 254 LAQLLY-DFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEK 312
Query: 188 ASEKGHAGAAIAYGSLLLRGVQVPE 212
A + A A G + RG
Sbjct: 313 AVGREVA-ADYYLGQIYRRGYLGKV 336
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 1e-12
Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 5/171 (2%)
Query: 68 LKTAKENFELALEADNSNTHARYWLSKLHLK-YHVPGACKAMGAALLVDAANMGDPDAQY 126
++ + + A L KL+ + VP A A A + A Y
Sbjct: 267 VEQMMKYLDNG--RAADQPRAELLLGKLYYEGKWVP-ADAKAAEAHFEKAVG-REVAADY 322
Query: 127 ELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFH 186
LG R Q+A ++ A A + + ++ G K D +A
Sbjct: 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382
Query: 187 RASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLM 237
A + A L + ++ AA+ A L
Sbjct: 383 LAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTLQLH 433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 16/139 (11%), Positives = 35/139 (25%), Gaps = 5/139 (3%)
Query: 71 AKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGC 130
+++ A L+ + AA EL
Sbjct: 126 VNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY-DQHLDDVERICKAALNTTDICYVELAT 184
Query: 131 RLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCV--KKDIASALWCFHRA 188
+ + + + +E V + A + + GD D +A +
Sbjct: 185 VYQ-KKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243
Query: 189 SEKGHAGAAIAYGSLLLRG 207
G+ + ++ LL
Sbjct: 244 -APGYPASWVSLAQLLYDF 261
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 6e-15
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 6/101 (5%)
Query: 116 AANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVK 175
A + + L ++ + Q+ F Y+ KA + LG Y G VK
Sbjct: 21 ACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVK 74
Query: 176 KDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTK 216
KD+ A + +A + G G V + +
Sbjct: 75 KDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ 115
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 3e-13
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 116 AANMGDPDAQYELGCRLR----VENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTG 171
A + + LG V+ D ++A Y KA +LG G
Sbjct: 51 ACELNSGNGCRFLGDFYENGKYVKKDL----RKAAQYYSKACGLNDQDGCLILGYKQYAG 106
Query: 172 DCVKKDIASALWCFHRASEKGHAGAAIAYGS 202
V K+ A+ F +A G A +
Sbjct: 107 KGVVKNEKQAVKTFEKACRLGSEDACGILNN 137
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 3e-05
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 6/77 (7%)
Query: 140 QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIA 199
+ ++A Y KA + L + + + +A E
Sbjct: 9 KDLKKAIQYYVKACELNEMFGCLSLVSN------SQINKQKLFQYLSKACELNSGNGCRF 62
Query: 200 YGSLLLRGVQVPECLTK 216
G G V + L K
Sbjct: 63 LGDFYENGKYVKKDLRK 79
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 2e-06
Identities = 44/294 (14%), Positives = 93/294 (31%), Gaps = 70/294 (23%)
Query: 12 KSA-ALGLLQSNQHQKR------WLHSRN-KKAMELIAKGWSALKEVDRVIDYCELNDRR 63
K+ AL + S + Q + WL+ +N ++ L ++D ++ +D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDH- 219
Query: 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLV--DAANMGD 121
K R SK + LLV + N
Sbjct: 220 ----SSNIKLRIHSIQAELR-----RLLKSKPYEN------------CLLVLLNVQNAKA 258
Query: 122 PDAQYELGCRL----RVEN--DYVQSDQQAFYYIEKAVDQLHPG-ALYLLGTVYLTGDCV 174
+A + L C++ R + D++ + ++ L P LL YL DC
Sbjct: 259 WNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YL--DCR 314
Query: 175 KKDIASALWCFHRASEKGH--AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA-KKARAN 231
+D+ R + + I + G+ + +N +++ + +
Sbjct: 315 PQDLP-------REVLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 232 LESNLMNPVEKAKEQFEVAA--QAGCN-----LGLRWLQRIEEEEKRLLTESSR 278
LE ++ F+ + + L L W I+ + ++ + +
Sbjct: 366 LEPAEY------RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 282 | |||
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 100.0 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 100.0 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 100.0 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 100.0 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.97 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.97 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.97 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.96 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.95 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.81 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.8 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.76 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.72 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.71 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.71 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.71 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.7 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.69 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.69 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.68 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.68 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.68 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.67 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.67 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.65 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.65 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.63 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.63 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.62 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.59 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.59 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.57 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.57 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.56 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.56 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.56 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.53 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.53 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.53 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.52 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.51 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.51 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.49 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.49 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.49 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.48 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.48 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.48 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.45 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.45 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.43 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.4 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.4 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.39 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.38 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.37 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.34 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.32 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.3 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.28 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.28 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.27 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.25 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.25 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.24 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.23 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.23 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.2 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.2 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.2 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.19 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.19 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.17 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.17 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.15 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.15 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.15 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.14 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.14 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.14 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.14 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.13 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.13 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.12 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.12 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.1 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.09 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.09 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.08 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.08 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.07 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.05 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.05 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.04 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.04 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.03 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.02 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.02 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.02 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.01 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.0 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.99 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.98 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.98 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.98 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.96 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.93 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.93 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.92 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.92 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.92 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.92 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.91 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.9 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.9 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.9 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.89 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.89 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.88 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.86 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.85 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.85 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.84 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.83 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.83 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.82 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.82 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.81 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.8 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.77 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.77 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.77 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.77 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.76 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.74 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.73 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.73 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.67 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.66 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.62 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.61 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.61 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.58 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.58 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.53 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.53 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.49 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.49 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.49 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.47 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.45 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.39 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.36 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.33 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.25 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.06 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.06 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.96 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.93 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.89 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.83 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.73 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.68 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.68 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.66 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.65 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.56 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.52 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.49 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.37 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.35 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.88 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.79 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.55 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.42 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.15 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 95.8 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.45 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.2 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 92.03 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 91.97 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.2 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.18 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 89.81 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.28 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.32 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.62 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 85.33 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.03 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 84.63 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 84.59 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 83.7 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 82.62 |
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=234.88 Aligned_cols=192 Identities=20% Similarity=0.169 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHH
Q 023425 69 KTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYY 148 (282)
Q Consensus 69 ~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~ 148 (282)
++|+.+|+++++ .|++.+++.||.+|... .++++|+.||++|++.|++.|+++||.+|.. +++++|+++|+.|
T Consensus 3 ~eA~~~~~~aa~--~g~~~a~~~lg~~~~~~----~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAE--AGDRRAQYYLADTWVSS----GDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHH--TTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHH--CCCHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 568899999965 48999999999999874 6889999999999999999999999999998 5788899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 149 IEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 149 ~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
|++|++.|++.|+++||.+|..|.++++|+++|+.||++|++.|+ +.++++||.+|..|.++++|+++|+.||++|
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred HH-----HHchhchh------c--cCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 023425 225 AK-----KARANLES------N--LMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEE 267 (282)
Q Consensus 225 ~~-----~a~~~lg~------~--~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~ 267 (282)
++ .++++||. + ++.|+++|+.||++|++.|++.|+..|..|.+
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l~~ 211 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRISK 211 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 87 36677772 2 56799999999999999999999999998864
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=250.54 Aligned_cols=233 Identities=15% Similarity=0.081 Sum_probs=200.4
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAA 111 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~ 111 (282)
+.+++..++..+................. .++.+++++|+.+|+++++.++.++.++++||.+|..+.++++|.++|+.
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~-~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQK-KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44455555554443333322222222222 66777999999999999988777777779999999999889999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 112 LLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 112 ~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
||++|+ +|++.++++||.+|+.+.. ..|+++|+.||++|++.|++.|+++||.+|..|.|+++|+++|+.||++|+ .
T Consensus 239 ~~~~aa-~g~~~a~~~Lg~~~~~~~~-~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 239 LLEKIA-PGYPASWVSLAQLLYDFPE-LGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp HHHHHG-GGSTHHHHHHHHHHHHSGG-GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-T
T ss_pred HHHHHc-CCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-C
Confidence 999999 9999999999999775544 789999999999999999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH----HHchhch------hccCCCHHHHHHHHHHHHHhccHHHHHH
Q 023425 192 GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----KARANLE------SNLMNPVEKAKEQFEVAAQAGCNLGLRW 261 (282)
Q Consensus 192 g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~a~~~lg------~~~~~~~~~A~~~~~~Aa~~g~~~a~~~ 261 (282)
|++.|+++||.+|..|.|+++|+++|+.||++|++ .++++|| .++++|+.+|+.||++|++.|++.|...
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~ 395 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDL 395 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999998 4667777 3478899999999999999999999999
Q ss_pred HHHHHHH
Q 023425 262 LQRIEEE 268 (282)
Q Consensus 262 l~~l~~~ 268 (282)
+..+...
T Consensus 396 l~~l~~~ 402 (452)
T 3e4b_A 396 ATQLEAP 402 (452)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9998653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=246.16 Aligned_cols=238 Identities=16% Similarity=0.092 Sum_probs=199.9
Q ss_pred ccchHHHHHHHHHHhhhhh-HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALK-EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.+++++|++||.+++.... ............+.++++|+++|+.||+++++ ++++.+++.||.+|..+.+++.++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL--KGLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 6788999999998876422 22222333444456778899999999999964 57999999999999988888889999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 109 GAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 109 A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
|+.||++|++.|+++++++||.+|..|.++++|+++|+.||+++++.|++.+++.||.+|..|.++.+|+++|+.||++|
T Consensus 134 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 213 (490)
T 2xm6_A 134 SVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKS 213 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999888888999999999999999999999999999999988899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH----HHchhchh------ccCCCHHHHHHHHHHHHHhccHHH
Q 023425 189 SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----KARANLES------NLMNPVEKAKEQFEVAAQAGCNLG 258 (282)
Q Consensus 189 ~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~a~~~lg~------~~~~~~~~A~~~~~~Aa~~g~~~a 258 (282)
++.|++.++++||.+|..|.++.+++++|+.||+++++ .+++++|. ++.+|+++|+.||++|++.|++.+
T Consensus 214 ~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a 293 (490)
T 2xm6_A 214 ATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDG 293 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHH
T ss_pred HHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999988888999999999999886 45666663 247788888888888888888888
Q ss_pred HHHHHHHHHHH
Q 023425 259 LRWLQRIEEEE 269 (282)
Q Consensus 259 ~~~l~~l~~~~ 269 (282)
.+.|+.+....
T Consensus 294 ~~~Lg~~y~~~ 304 (490)
T 2xm6_A 294 QYYLAHLYDKG 304 (490)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcC
Confidence 88888887764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=241.65 Aligned_cols=237 Identities=15% Similarity=0.055 Sum_probs=196.4
Q ss_pred ccchHHHHHHHHHHhhhhh-HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALK-EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.+++++|++||.++..... ............+.++.+|+++|+.+|+++++ ++++.+++.||.+|..+.++++|.++
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE--QGRDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 6788999999998876432 22223344444456778889999999999964 57899999999999988888889999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 109 GAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 109 A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
|+.||+++++.|++.++++||.+|..|.++++|+++|+.||+++++.|++.+++.||.+|..|.++.+|+++|+.||+++
T Consensus 170 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 170 AREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999998888888899999999999999999999999999998888889999999999999
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH----HHchhchhc-------cCCCHHHHHHHHHHHHHhccHH
Q 023425 189 SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----KARANLESN-------LMNPVEKAKEQFEVAAQAGCNL 257 (282)
Q Consensus 189 ~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~a~~~lg~~-------~~~~~~~A~~~~~~Aa~~g~~~ 257 (282)
++.|++.++++||.+|..|.++.+|+++|+.||+++++ .+++++|.+ +.+|+++|+.||++|++.|++.
T Consensus 250 ~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~ 329 (490)
T 2xm6_A 250 AEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDAT 329 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHH
Confidence 99899999999999999888888899999999998886 456666632 3478888888888888888888
Q ss_pred HHHHHHHHHHH
Q 023425 258 GLRWLQRIEEE 268 (282)
Q Consensus 258 a~~~l~~l~~~ 268 (282)
+.+.|+.+...
T Consensus 330 a~~~lg~~y~~ 340 (490)
T 2xm6_A 330 AQANLGAIYFR 340 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=218.11 Aligned_cols=190 Identities=16% Similarity=0.062 Sum_probs=168.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Q 023425 34 KKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALL 113 (282)
Q Consensus 34 ~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~ 113 (282)
.+|+.||.++.+.. +....+..+..+...+|+++|+.||++|++ ++++.++++||.+|.. +++++|.++|+.||
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 45778888877642 222333333333346789999999999965 5899999999999998 58889999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 114 VDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH----PGALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 114 ~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
++|+++|++.|+++||.+|..|.++++|+++|+.||++|++.|+ +.|+++||.+|..|.++++|+++|+.||++|+
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred Hc-CCHHHHHHHHHHHHcCCC--CcccHHHHHHHHHHHHHHHc
Q 023425 190 EK-GHAGAAIAYGSLLLRGVQ--VPECLTKLNAKRVSAAKKAR 229 (282)
Q Consensus 190 ~~-g~~~a~~~Lg~~y~~g~g--~~~~~~~A~~~~~~a~~~a~ 229 (282)
+. +++.++++||.+|..|.+ +++|+++|+.||++|++.+.
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 899999999999999987 99999999999999998644
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=217.43 Aligned_cols=235 Identities=15% Similarity=0.137 Sum_probs=208.1
Q ss_pred ccchHHHHHHHHHHhhhhh-HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALK-EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.+++++|+++|.+++.... ............+.++.+++++|+.+|+++++. +++.+++.||.+|..+.++..++++
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~ 96 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQNTNK 96 (273)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhCCCCcccCHHH
Confidence 4579999999999887222 111122233333445689999999999999866 6999999999999998888899999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 109 GAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 109 A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
|+.+|++|++.+++.++++||.+|..+.++..++++|+.+|++|++.+++.++++||.+|..|.++.+++++|+.+|++|
T Consensus 97 A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 176 (273)
T 1ouv_A 97 ALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKA 176 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH----HHchhchhc------cCCCHHHHHHHHHHHHHhccHHH
Q 023425 189 SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----KARANLESN------LMNPVEKAKEQFEVAAQAGCNLG 258 (282)
Q Consensus 189 ~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~a~~~lg~~------~~~~~~~A~~~~~~Aa~~g~~~a 258 (282)
++.+++.++++||.+|..|.++.+++++|+.||+++++ .+++++|.+ +.+++++|+.||++|++.|++.+
T Consensus 177 ~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 177 CDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999997 466677733 48899999999999999999999
Q ss_pred HHHHHHHH
Q 023425 259 LRWLQRIE 266 (282)
Q Consensus 259 ~~~l~~l~ 266 (282)
..+|..+.
T Consensus 257 ~~~l~~~~ 264 (273)
T 1ouv_A 257 CDILKQLK 264 (273)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHH
Confidence 99988664
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=232.31 Aligned_cols=216 Identities=17% Similarity=0.043 Sum_probs=187.9
Q ss_pred chHHHHHHHHHHhhhhhHH-H--HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 32 RNKKAMELIAKGWSALKEV-D--RVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
++++|++||.+++...... . ......+..+.++.+|+++|+.||++++ ||++.++++||.+|..+.+ ..|.++
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~-~~d~~~ 269 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE-LGDVEQ 269 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG-GCCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC-CCCHHH
Confidence 8999999999998755422 1 2344555566788899999999999995 8999999999999765544 589999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 109 GAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 109 A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
|+.||++|++.|++.|+++||.+|..|.++++|+++|+.||++|+ .|++.|+++||.+|..|.|+++|+++|+.||++|
T Consensus 270 A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 270 MMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH----Hchhchhc----cCCCHHHHHHHHHHHHH
Q 023425 189 SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK----ARANLESN----LMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 189 ~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----a~~~lg~~----~~~~~~~A~~~~~~Aa~ 252 (282)
++.|++.|+++||.+|..|.|+++|+++|..||++|++. +...++.+ .+.+..+|....++-..
T Consensus 349 a~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 349 ARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999984 44455533 44466677666665444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-28 Score=205.95 Aligned_cols=201 Identities=20% Similarity=0.171 Sum_probs=190.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++++|+.+|+++++ ++++.+++.||.+|..+.++..++++|+.+|++|++.+++.++++||.+|..|.++..++++|
T Consensus 20 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A 97 (273)
T 1ouv_A 20 KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKA 97 (273)
T ss_dssp TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHH
Confidence 469999999999976 799999999999999987788999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 146 FYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 146 ~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
+.+|++|++.+++.++++||.+|..|.++.+++++|+.+|++|++.+++.++++||.+|..|.++.+++++|+.+|++++
T Consensus 98 ~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 177 (273)
T 1ouv_A 98 LQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKAC 177 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H----HHchhchhc------cCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 023425 226 K----KARANLESN------LMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEEE 268 (282)
Q Consensus 226 ~----~a~~~lg~~------~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~~ 268 (282)
+ .+++++|.+ +.+++++|+.||++|++.+++.+.+.|+.+...
T Consensus 178 ~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 178 DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 8 466777733 388999999999999999999999999999986
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=183.51 Aligned_cols=135 Identities=19% Similarity=0.091 Sum_probs=97.1
Q ss_pred cCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCc
Q 023425 60 NDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
.+.++++|+++|+.||+++++. +++.++ ||.+|..+.++ ++|++||++|++.|++.|+++||.+|..|.+++
T Consensus 3 ~G~g~~~d~~~A~~~~~~aa~~--g~~~a~--lg~~y~~g~~~----~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 3 GGGTVKKDLKKAIQYYVKACEL--NEMFGC--LSLVSNSQINK----QKLFQYLSKACELNSGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHT--TCTTHH--HHHHTCTTSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred CCcCCccCHHHHHHHHHHHHcC--CCHhhh--HHHHHHcCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCC
Confidence 3566777777777777777644 566666 77777766433 557777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023425 140 QSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGS 202 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~ 202 (282)
+|+++|+.||++|++.|++.|+++||.+|..|.|+++|+++|++||++|++.|++.|+++|+.
T Consensus 75 ~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~ 137 (138)
T 1klx_A 75 KDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137 (138)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 777777777777777777777777777777777777777777777777777777777777664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=180.38 Aligned_cols=131 Identities=18% Similarity=0.147 Sum_probs=122.0
Q ss_pred hcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCcc
Q 023425 97 LKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKK 176 (282)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~ 176 (282)
..|.++++|+++|+.||++|++.|++.|+ ||.+|..+.++ ++|+.||++|++.|++.|+++||.+|..|.|+++
T Consensus 2 ~~G~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~----~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 2 VGGGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINK----QKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC
T ss_pred CCCcCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCc
Confidence 35677889999999999999999999999 99999998777 7799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH----Hchhch
Q 023425 177 DIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK----ARANLE 233 (282)
Q Consensus 177 d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----a~~~lg 233 (282)
|+++|++||++|++.|++.|+++||.+|..|.|+++|+++|+.||++|++. ++.+|+
T Consensus 76 d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~ 136 (138)
T 1klx_A 76 DLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILN 136 (138)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC-
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999984 555554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-18 Score=150.62 Aligned_cols=221 Identities=16% Similarity=0.041 Sum_probs=126.1
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGA 110 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~ 110 (282)
+++++|++.+.+++...+ .........+......+++++|+.+|+++++.+|+++.+++.+|.++... .++++|+
T Consensus 149 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----~~~~~A~ 223 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA----RIFDRAV 223 (388)
T ss_dssp SCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT----TCTTHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHH
Confidence 555555555555544222 11222223333333344566666666666666666666666666666544 3345666
Q ss_pred HHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 023425 111 ALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 111 ~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~ 186 (282)
..|+++++ +.++.+++++|.+|...+ ++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+
T Consensus 224 ~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 295 (388)
T 1w3b_A 224 AAYLRALSLSPNHAVVHGNLACVYYEQG----LIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYN 295 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHH
T ss_pred HHHHHHHhhCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence 66666653 445666666666666533 336666666666655 456666666666666 666666666666
Q ss_pred HHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--
Q 023425 187 RASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG-- 254 (282)
Q Consensus 187 ~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g-- 254 (282)
++++. .++.++.++|.+|.. .+++++|+.+|+++.+ .+++++|. ...+++++|+.+|+++.+..
T Consensus 296 ~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 296 TALRLCPTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHhhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 66553 356666666666665 5666666666666654 34555553 35566667777777766644
Q ss_pred cHHHHHHHHHHHHH
Q 023425 255 CNLGLRWLQRIEEE 268 (282)
Q Consensus 255 ~~~a~~~l~~l~~~ 268 (282)
++.+...++.+...
T Consensus 372 ~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 372 FADAYSNMGNTLKE 385 (388)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHhHHHHHHH
Confidence 45555555555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=144.76 Aligned_cols=175 Identities=18% Similarity=0.074 Sum_probs=133.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCc---
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYV--- 139 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~--- 139 (282)
.+++++|+..|+++++.+|+++.+++.+|.++... .++++|+.+|++++ ++++++++++||.++.......
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 93 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENPQDPEALYWLARTQLKL----GLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDR 93 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhh
Confidence 34589999999999999999999999999999866 56799999999987 4678999999999988730000
Q ss_pred ----CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCcc
Q 023425 140 ----QSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-GHAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 140 ----~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-g~~~a~~~Lg~~y~~g~g~~~ 212 (282)
.++++|+..|+++++. +++.+++++|.+|.. .+++++|+.+|++|++. .++.+++++|.+|.. .+
T Consensus 94 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~g 165 (217)
T 2pl2_A 94 ERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQALALEDTPEIRSALAELYLS----MG 165 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HT
T ss_pred cccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHHHHHHHHHH----cC
Confidence 4559999999999886 689999999999998 89999999999998665 678899999999988 88
Q ss_pred cHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAA 251 (282)
Q Consensus 213 ~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa 251 (282)
++++|+.+|+++++ .++.++|. ...+++++|+.+|+++-
T Consensus 166 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 166 RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 89999999999887 46667774 36778888988887753
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-17 Score=144.94 Aligned_cols=220 Identities=13% Similarity=0.034 Sum_probs=125.2
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIP-LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.+++++|++++.+.+...+. .....+..+......+ ++++|+.+|+++++.+|.++.+++.+|.++... .++++
T Consensus 69 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~ 143 (330)
T 3hym_B 69 LNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE----SEHDQ 143 (330)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH----TCHHH
T ss_pred hhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc----cCHHH
Confidence 44556666666555542221 1122222222222333 466666666666666666666666666666543 34566
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+..|+++.+ ++++.+++.+|.+|.. ..++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 215 (330)
T 3hym_B 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGL----TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAEKW 215 (330)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccHHHHHHH
Confidence 6666666653 3455666666666665 33336666666666655 456666666666666 6666666666
Q ss_pred HHHHHH-----------cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHH
Q 023425 185 FHRASE-----------KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKE 245 (282)
Q Consensus 185 ~~~A~~-----------~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~ 245 (282)
|+++++ ...+.+++++|.+|.. .+++++|+.+|+++.. .++.++|. ...+++++|+.
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK----LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHH
Confidence 666655 2334566666666665 5666666666666665 34445553 25566666666
Q ss_pred HHHHHHHhc--cHHHHHHHHHHH
Q 023425 246 QFEVAAQAG--CNLGLRWLQRIE 266 (282)
Q Consensus 246 ~~~~Aa~~g--~~~a~~~l~~l~ 266 (282)
+|+++.+.. ++.+...++...
T Consensus 292 ~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 292 YFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHHHHHHHHHH
Confidence 666666554 455555555544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-17 Score=147.14 Aligned_cols=222 Identities=16% Similarity=0.045 Sum_probs=155.2
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.+.+++...+. ........+......+++++|+..|+++++.+|+++.+++.+|.++... .+.++|
T Consensus 114 ~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A 188 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ----GEIWLA 188 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT----TCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHH
Confidence 34455555555554432221 1112222222233346678888888888888888888888888887755 466888
Q ss_pred HHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+.+|++++ .+.++++++++|.++...+.. ++|+..|+++... .++.++.++|.+|.. .+++++|+.+|
T Consensus 189 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~ 260 (388)
T 1w3b_A 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIF----DRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTY 260 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT----THHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 88888876 356778888888888774444 8888888888775 567888888888887 78888888888
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc-
Q 023425 186 HRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG- 254 (282)
Q Consensus 186 ~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g- 254 (282)
+++++. .++.+++++|.+|.. .+++++|+.+|+++.+ ..+.++|. ...+++++|+.+|+++.+..
T Consensus 261 ~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 261 RRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 888775 457888888888887 7888888888888876 35566663 36778888888888888754
Q ss_pred -cHHHHHHHHHHHHH
Q 023425 255 -CNLGLRWLQRIEEE 268 (282)
Q Consensus 255 -~~~a~~~l~~l~~~ 268 (282)
++.+...++.+...
T Consensus 337 ~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQ 351 (388)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHH
Confidence 45566666666543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-17 Score=132.83 Aligned_cols=157 Identities=18% Similarity=0.122 Sum_probs=133.3
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHH
Q 023425 53 VIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGC 130 (282)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~ 130 (282)
.+++..|..+...+++++|+.+|+++++.+|+++.+++.||.+|... .++++|+..+.++.. +.++.++..+|.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDI----GLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 34455555555667799999999999999999999999999999976 577999999999974 578999999999
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
++.. ..+++.|..++.++... .++.++..+|.+|.. .+++++|+.+|+++++. .++.+++++|.+|..
T Consensus 82 ~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 82 ANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 9998 45569999999999886 689999999999999 99999999999999875 579999999999998
Q ss_pred CCCCcccHHHHHHHHHHHH
Q 023425 207 GVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 207 g~g~~~~~~~A~~~~~~a~ 225 (282)
.+++++|+.+|++|+
T Consensus 154 ----~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 154 ----KGLRDEAVKYFKKAL 168 (184)
T ss_dssp ----TTCHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHH
Confidence 666665444444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=148.01 Aligned_cols=209 Identities=12% Similarity=-0.051 Sum_probs=169.3
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++.+.+++...+. .....+..+..+...+++++|+.+|+++++.+|.++.+++.||.+|... .++++
T Consensus 77 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~ 151 (365)
T 4eqf_A 77 KEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT----SHQQD 151 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred HCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc----ccHHH
Confidence 367899999999998874443 3445555555566668899999999999999999999999999999976 57799
Q ss_pred HHHHHHHHHhCC--CHHHH----------HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C--CHHHHHHHHHHHhcCC
Q 023425 109 GAALLVDAANMG--DPDAQ----------YELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L--HPGALYLLGTVYLTGD 172 (282)
Q Consensus 109 A~~~~~~Aa~~g--~~~A~----------~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g--~~~A~~~Lg~~y~~g~ 172 (282)
|+.+|+++++.. ++.++ ..+|.++.. ..++++|+.+|+++.+. . ++.+++.+|.+|..
T Consensus 152 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-- 225 (365)
T 4eqf_A 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD----SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-- 225 (365)
T ss_dssp HHHHHHHHHHHCHHHHCC-------------------C----CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH--
Confidence 999999998642 23333 345777777 44559999999999987 3 78999999999999
Q ss_pred CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHH
Q 023425 173 CVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEK 242 (282)
Q Consensus 173 g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~ 242 (282)
.+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++.. .++.++|. ...+++++
T Consensus 226 --~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 226 --SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN----GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp --HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred --CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999875 578999999999998 8999999999999987 46778884 47889999
Q ss_pred HHHHHHHHHHhc
Q 023425 243 AKEQFEVAAQAG 254 (282)
Q Consensus 243 A~~~~~~Aa~~g 254 (282)
|+.+|++|.+..
T Consensus 300 A~~~~~~al~~~ 311 (365)
T 4eqf_A 300 AVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999999976
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-17 Score=139.11 Aligned_cols=225 Identities=12% Similarity=-0.070 Sum_probs=185.7
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.+.+.+...+... ...+..+......+++++|+.+|+++++.+|.++.+++.+|.++...+ .++++|
T Consensus 35 ~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~A 110 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDPFHA-SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG---HKNEHA 110 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCT-TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC---SCHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh---hhHHHH
Confidence 6889999999999876444221 111111122233467999999999999999999999999999998662 267999
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+.+|
T Consensus 111 ~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 182 (330)
T 3hym_B 111 RRYLSKATTLEKTYGPAWIAYGHSFAV----ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL----TNNSKLAERFF 182 (330)
T ss_dssp HHHHHHHHTTCTTCTHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH----HhhHHHHHHHH
Confidence 999999985 4688999999999998 55569999999999986 568999999999999 89999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH---------------Hchhchh--ccCCCHHHHHHH
Q 023425 186 HRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK---------------ARANLES--NLMNPVEKAKEQ 246 (282)
Q Consensus 186 ~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------a~~~lg~--~~~~~~~~A~~~ 246 (282)
+++++. .++.+++.+|.+|.. .+++++|..+++++... .+.++|. ...+++++|+.+
T Consensus 183 ~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 183 SQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHH----cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999885 578999999999998 89999999999999873 4556773 478899999999
Q ss_pred HHHHHHhc--cHHHHHHHHHHHHHHh
Q 023425 247 FEVAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 247 ~~~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
|+++.+.. ++.+...++.+.....
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g 284 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMG 284 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhc
Confidence 99999876 5677788888776554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=138.87 Aligned_cols=184 Identities=16% Similarity=0.096 Sum_probs=142.4
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCC-----
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPG----- 103 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~----- 103 (282)
..+++++|+..+.+++...+. .....+..+......+++++|+..|+++++.+|+++.++++||.++.......
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 95 (217)
T 2pl2_A 17 ALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRER 95 (217)
T ss_dssp HTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcc
Confidence 356799999999999874443 33444555555555678999999999999999999999999999998530000
Q ss_pred --cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCH
Q 023425 104 --ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDI 178 (282)
Q Consensus 104 --~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~ 178 (282)
.++++|+..|+++++ ++++.+++++|.+|...+ ++++|+.+|+++++. +++.+++++|.+|.. .+++
T Consensus 96 ~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~g~~ 167 (217)
T 2pl2_A 96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG----ERDKAEASLKQALALEDTPEIRSALAELYLS----MGRL 167 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTCH
T ss_pred cccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhcccchHHHHHHHHHHHH----cCCH
Confidence 467999999999984 789999999999999944 459999999999876 789999999999999 9999
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 179 ASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 179 ~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
++|+.+|+++++. +++.+++++|.++.. .+++++|+.+|+++-
T Consensus 168 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 168 DEALAQYAKALEQAPKDLDLRVRYASALLL----KGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------------
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHh
Confidence 9999999999875 689999999999998 889999999998764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-15 Score=131.80 Aligned_cols=225 Identities=10% Similarity=-0.014 Sum_probs=150.5
Q ss_pred ccchHHHHHHHHHHhhhhh---HHHHHHHHHh------------hcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSALK---EVDRVIDYCE------------LNDRRLIPLLKTAKENFELALEADNSNTHARYWLSK 94 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~---~~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~ 94 (282)
.+++++|++.+.+++...+ .... ..... +......+++++|+.+|+++++..|+++.++..+|.
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKE-AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHH-HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 5667777777777665433 2211 11111 223333466777777777777777777777777777
Q ss_pred HHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHH--------
Q 023425 95 LHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALY-------- 162 (282)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~-------- 162 (282)
++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|+++.+. .++.++.
T Consensus 163 ~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 163 CFIKE----GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHT----TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 77755 466777777777774 4577777778877777 44457788888877765 4444433
Q ss_pred ----HHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CH----HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------
Q 023425 163 ----LLGTVYLTGDCVKKDIASALWCFHRASEKG--HA----GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------ 226 (282)
Q Consensus 163 ----~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------ 226 (282)
.+|.++.. .+++++|+.+|+++++.. ++ .++..+|.+|.. .+++++|+.+|+++.+
T Consensus 235 ~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 306 (359)
T 3ieg_A 235 NKLIESAEELIR----DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK----DEKPVEAIRICSEVLQMEPDNV 306 (359)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcccH
Confidence 34666776 677888888888877643 22 346667888877 7778888888888876
Q ss_pred HHchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhh
Q 023425 227 KARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEKR 271 (282)
Q Consensus 227 ~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~~ 271 (282)
..++.+|. ...+++++|+.+|+++.+.. ++.+...|..+....+.
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 35556663 36778888888888888765 56666777777665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=140.28 Aligned_cols=195 Identities=17% Similarity=0.046 Sum_probs=139.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCC----
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDY---- 138 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~---- 138 (282)
.+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.+|...+..
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN----EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC 152 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34466666666666666666666666666666644 345666666666653 34566666666666553222
Q ss_pred -----------------------------------------cCCHHHHHHHHHHHHHc--C--CHHHHHHHHHHHhcCCC
Q 023425 139 -----------------------------------------VQSDQQAFYYIEKAVDQ--L--HPGALYLLGTVYLTGDC 173 (282)
Q Consensus 139 -----------------------------------------~~d~~~A~~~~~kAa~~--g--~~~A~~~Lg~~y~~g~g 173 (282)
..++++|+.+|+++.+. . ++.++..+|.+|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~--- 229 (368)
T 1fch_A 153 EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL--- 229 (368)
T ss_dssp HHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH---
Confidence 12335555555555554 2 67889999999998
Q ss_pred CccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHH
Q 023425 174 VKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKA 243 (282)
Q Consensus 174 ~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A 243 (282)
.+++++|+.+|++++.. .++.+++++|.+|.. .+++++|+.+|+++.. .+++++|. ...+++++|
T Consensus 230 -~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 230 -SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 89999999999999875 568899999999998 8899999999999987 46777884 478899999
Q ss_pred HHHHHHHHHhcc-------------HHHHHHHHHHHHHHhh
Q 023425 244 KEQFEVAAQAGC-------------NLGLRWLQRIEEEEKR 271 (282)
Q Consensus 244 ~~~~~~Aa~~g~-------------~~a~~~l~~l~~~~~~ 271 (282)
+.+|+++.+... ..+...|+.+.....+
T Consensus 305 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999998763 5677778877776543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=144.58 Aligned_cols=222 Identities=11% Similarity=-0.027 Sum_probs=162.9
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPL-LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.+++++|++.+.+++...+ ......+..+..+...++ +++|+.+|+++++.+|.++.+++++|.++... .++++
T Consensus 110 ~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~----g~~~e 184 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL----RDPSQ 184 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCCTT
T ss_pred CCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----cCHHH
Confidence 4678999999999887443 334444445454445564 99999999999999999999999999998866 35588
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHH---
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASA--- 181 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A--- 181 (282)
|+..|++|++ ++++.+++++|.++...+.. ++|+.+|+++++. .++.+++++|.+|..-. +..++|
T Consensus 185 Al~~~~kal~ldP~~~~a~~~lg~~~~~~g~~----~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~---~~~~eA~~~ 257 (382)
T 2h6f_A 185 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLW----DNELQYVDQLLKEDVRNNSVWNQRYFVISNTT---GYNDRAVLE 257 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CSCSHHHHH
T ss_pred HHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CcchHHHHH
Confidence 9999999974 67899999999999885555 8899999999887 68999999999988721 122444
Q ss_pred --HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc--cC--------CC-H
Q 023425 182 --LWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN--LM--------NP-V 240 (282)
Q Consensus 182 --~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~--~~--------~~-~ 240 (282)
+.+|++|+.. +++.+++++|.++... | ..++++|+..++++ + .++..+|.+ .. ++ +
T Consensus 258 ~el~~~~~Al~l~P~~~~a~~~l~~ll~~~-g-~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 258 REVQYTLEMIKLVPHNESAWNYLKGILQDR-G-LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-C-GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHcc-C-ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 6889998775 5788999999988861 1 23677888888776 3 244455522 11 22 5
Q ss_pred HHHHHHHHHH-HHhccHHHHHHHHHHH
Q 023425 241 EKAKEQFEVA-AQAGCNLGLRWLQRIE 266 (282)
Q Consensus 241 ~~A~~~~~~A-a~~g~~~a~~~l~~l~ 266 (282)
++|+.+|+++ .+.......+|+....
T Consensus 335 ~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 335 NKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 8899999998 6776655555554433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=135.08 Aligned_cols=224 Identities=13% Similarity=0.045 Sum_probs=171.5
Q ss_pred hcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHhcCCCCC
Q 023425 28 WLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNT----HARYWLSKLHLKYHVPG 103 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~----~a~~~Lg~~~~~~~~~~ 103 (282)
...+++++|++.+.+++...+.. ....+..+..+...+++++|+.+|+++++ .++++ .+++.+|.++...
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~---- 87 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKKYNS-PYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKK---- 87 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCCC-STTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHT----
T ss_pred HHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHc----
Confidence 34667999999999988754322 22233333334445779999999999997 44444 4589999999976
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH-HHHhcCCCCccCH
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLG-TVYLTGDCVKKDI 178 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg-~~y~~g~g~~~d~ 178 (282)
.++++|+.+|+++++ +.++.++..+|.+|.. ..++++|+.+|+++++. .++.+++.+| .+|.. +++
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-----~~~ 158 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-----KEY 158 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-----TCH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-----HHH
Confidence 578999999999985 5789999999999998 45559999999999986 6899999999 88877 399
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH--------------Hchhchh--ccCCCH
Q 023425 179 ASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK--------------ARANLES--NLMNPV 240 (282)
Q Consensus 179 ~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------------a~~~lg~--~~~~~~ 240 (282)
++|+.+|+++++. .++.+++.+|.++..- +...++++|+.+|+++.+. ++..+|. ...+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHc-CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999885 4689999999999872 1122266778888887763 3445664 478999
Q ss_pred HHHHHHHHHHHHhc--cHHHHHHHHHHHH
Q 023425 241 EKAKEQFEVAAQAG--CNLGLRWLQRIEE 267 (282)
Q Consensus 241 ~~A~~~~~~Aa~~g--~~~a~~~l~~l~~ 267 (282)
++|+.+|+++.+.. ++.+...+..+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 99999999999876 6667666665544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-16 Score=124.09 Aligned_cols=164 Identities=13% Similarity=0.006 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPG 159 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~ 159 (282)
.++..+++||.+|... +++++|+.+|+++++ +.++++++.||.+|.. ..++++|+.++.++... .++.
T Consensus 3 e~~~iy~~lG~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 74 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTK----GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD----IGLPNDAIESLKKFVVLDTTSAE 74 (184)
T ss_dssp -CHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHH
T ss_pred cHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCchhHH
Confidence 4688999999999965 588999999999984 6899999999999999 44559999999999886 6899
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchh
Q 023425 160 ALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARAN 231 (282)
Q Consensus 160 A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~ 231 (282)
++..+|.++.. .++++.|..++.++... .++.+++.+|.+|.. .+++++|+.+|+++.+ .++++
T Consensus 75 ~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 75 AYYILGSANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIKPGFIRAYQS 146 (184)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhcchhhhHHHH
Confidence 99999999999 89999999999999775 579999999999999 8999999999999998 57888
Q ss_pred chh--ccCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 023425 232 LES--NLMNPVEKAKEQFEVAAQAGCNLGLRWLQ 263 (282)
Q Consensus 232 lg~--~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~ 263 (282)
+|. ...+++++|+.+|++|++..+..+.++|+
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~la 180 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA 180 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHHH
Confidence 984 48889999999999999998887776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-16 Score=140.83 Aligned_cols=194 Identities=11% Similarity=-0.076 Sum_probs=161.8
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCC
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d 141 (282)
..+++++|+..|+++++.+|+++.+++++|.++...+ .++++|+.+|+++++ +.++.+++++|.++...+..
T Consensus 109 ~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g---~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~--- 182 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ---KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP--- 182 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC---
T ss_pred HCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc---cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH---
Confidence 3456999999999999999999999999999998662 248999999999985 67999999999999985555
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCccc-HH
Q 023425 142 DQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR-GVQVPEC-LT 215 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~-g~g~~~~-~~ 215 (282)
++|+.+|++|++. +++.+++++|.++.. .+++++|+.+|+++++. .++.+++++|.+|.. +...... .+
T Consensus 183 -~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~ 257 (382)
T 2h6f_A 183 -SQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 257 (382)
T ss_dssp -TTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred -HHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHH
Confidence 9999999999987 799999999999999 89999999999999886 579999999999998 3322333 34
Q ss_pred HHHHHHHHHHH------HHchhchhc--cCC--CHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 216 KLNAKRVSAAK------KARANLESN--LMN--PVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 216 ~A~~~~~~a~~------~a~~~lg~~--~~~--~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
.++.+|++++. .+|+++|.+ ..+ ++++|+.+++++ +.. ++.+...|+.+....
T Consensus 258 ~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 258 REVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 45799999987 588888843 333 688999999887 433 667777888777664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-14 Score=131.52 Aligned_cols=224 Identities=8% Similarity=-0.034 Sum_probs=177.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHH---HHH-----------HHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVD---RVI-----------DYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKL 95 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~---~~~-----------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~ 95 (282)
.+++++|++.+.+++...+... ... .+..+......+++++|+.+|+++++..|.++.+++.+|.+
T Consensus 107 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 186 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186 (450)
T ss_dssp TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 6778888888888776433221 110 11122223345779999999999999999999999999999
Q ss_pred HhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH-------
Q 023425 96 HLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLL------- 164 (282)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~L------- 164 (282)
|... .++++|+.+|++++ .+.++.+++.+|.+|... .++++|+.+|+++... +++.+...+
T Consensus 187 ~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 187 FIKE----GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL----GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHT----TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 9976 46699999999997 467899999999999984 4559999999999876 567766555
Q ss_pred -----HHHHhcCCCCccCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------H
Q 023425 165 -----GTVYLTGDCVKKDIASALWCFHRASEKG--H----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------K 227 (282)
Q Consensus 165 -----g~~y~~g~g~~~d~~~A~~~~~~A~~~g--~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~ 227 (282)
|.++.. .+++++|+.+|+++++.. + ..++..+|.++.. .+++++|+.+++++.. .
T Consensus 259 ~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~ 330 (450)
T 2y4t_A 259 KLIESAEELIR----DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK----DEKPVEAIRVCSEVLQMEPDNVN 330 (450)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHH
Confidence 888888 899999999999998753 3 3478999999998 8899999999999986 4
Q ss_pred Hchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 228 ARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 228 a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
++..+|. ...+++++|+.+|+++.+.. ++.+...++.+....
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 6777884 47889999999999998865 677888888776554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-15 Score=127.62 Aligned_cols=223 Identities=14% Similarity=0.021 Sum_probs=127.4
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCC---CCHHHHHHH------------HH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADN---SNTHARYWL------------SK 94 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---g~~~a~~~L------------g~ 94 (282)
.+++++|++.+.+++...+. .....+..+......+++++|+.+|+++++.+| .++.++..+ |.
T Consensus 50 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 50 MGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665543221 122333333333344556666666666666666 556665555 34
Q ss_pred HHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 95 LHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
++... .++++|+.+|+++++ +.++.++..+|.++.. ..++++|+.+|+++.+. .++.+++.+|.+|..
T Consensus 129 ~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 129 DAFDG----ADYTAAITFLDKILEVCVWDAELRELRAECFIK----EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH
T ss_pred HHHHc----cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44433 355666666666653 4556666666666666 33346666666666655 456666666666666
Q ss_pred CCCCccCHHHHHHHHHHHHHc--CCHHHH------------HHHHHHHHcCCCCcccHHHHHHHHHHHHH----------
Q 023425 171 GDCVKKDIASALWCFHRASEK--GHAGAA------------IAYGSLLLRGVQVPECLTKLNAKRVSAAK---------- 226 (282)
Q Consensus 171 g~g~~~d~~~A~~~~~~A~~~--g~~~a~------------~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------- 226 (282)
.+++++|+.+|+++++. .++.+. ..+|.++.. .+++++|+.+|+++..
T Consensus 201 ----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 272 (359)
T 3ieg_A 201 ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSKYESVMKTEPSVAEYTV 272 (359)
T ss_dssp ----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred ----cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 66666666666666553 233322 233555665 5666677777766665
Q ss_pred HHchhch--hccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 227 KARANLE--SNLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 227 ~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
.++..+| ....+++++|+.+|+++.+.. ++.+...++.+....
T Consensus 273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 273 RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 1233445 235677778888888777754 456666666666543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=152.87 Aligned_cols=153 Identities=16% Similarity=0.040 Sum_probs=137.2
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcC
Q 023425 58 ELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVE 135 (282)
Q Consensus 58 ~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g 135 (282)
.|..+...+++++|+.+|++|++.+|+++.++++||.+|... .++++|+..|++|++ +++++++++||.+|...
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~----g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ----GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 90 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 333334456699999999999999999999999999999976 577999999999974 67999999999999994
Q ss_pred CCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc
Q 023425 136 NDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVP 211 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~ 211 (282)
.++++|+.+|++|++. +++.++++||.+|.. .+++++|+.+|++|++. +++.++++||.+|.. .
T Consensus 91 ----g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~----~ 158 (723)
T 4gyw_A 91 ----QDVQGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI----V 158 (723)
T ss_dssp ----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----T
T ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh----c
Confidence 4559999999999987 789999999999999 99999999999999875 689999999999998 7
Q ss_pred ccHHHHHHHHHHHHH
Q 023425 212 ECLTKLNAKRVSAAK 226 (282)
Q Consensus 212 ~~~~~A~~~~~~a~~ 226 (282)
++++.|...|+++.+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 888999999999987
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-15 Score=124.55 Aligned_cols=200 Identities=14% Similarity=0.057 Sum_probs=153.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHhcCCCC
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN-------THARYWLSKLHLKYHVP 102 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~-------~~a~~~Lg~~~~~~~~~ 102 (282)
.+++++|++.+.+++... ......+..+..+...+++++|+.+|+++++..|.+ +.+++.+|.++...
T Consensus 18 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 92 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL--- 92 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---
T ss_pred hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc---
Confidence 456788888888777644 333444444445555567888888888888776666 67888888888765
Q ss_pred CcCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH
Q 023425 103 GACKAMGAALLVDAANM-GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIA 179 (282)
Q Consensus 103 ~~~~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~ 179 (282)
.++++|+.+|+++.+. ..++.+..+|. +++|+.+++++... .++.+++.+|.+|.. .++++
T Consensus 93 -~~~~~A~~~~~~a~~~~~~~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (258)
T 3uq3_A 93 -GDLKKTIEYYQKSLTEHRTADILTKLRN-----------AEKELKKAEAEAYVNPEKAEEARLEGKEYFT----KSDWP 156 (258)
T ss_dssp -TCHHHHHHHHHHHHHHCCCHHHHHHHHH-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----TTCHH
T ss_pred -ccHHHHHHHHHHHHhcCchhHHHHHHhH-----------HHHHHHHHHHHHHcCcchHHHHHHHHHHHHH----hcCHH
Confidence 5668888888888754 34444444443 37788888887776 467889999999998 89999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHH
Q 023425 180 SALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEV 249 (282)
Q Consensus 180 ~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~ 249 (282)
+|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++.. .++..+|. ...+++++|+.+|++
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999875 568899999999998 8899999999999987 46677774 478899999999999
Q ss_pred HHHhc
Q 023425 250 AAQAG 254 (282)
Q Consensus 250 Aa~~g 254 (282)
+.+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99887
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=130.86 Aligned_cols=224 Identities=13% Similarity=-0.078 Sum_probs=177.8
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++.+.+++...+. .....+..+......+++++|+.+|+++++.+|.++.+++.+|.++... .++++
T Consensus 33 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----~~~~~ 107 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE----HNANA 107 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc----CCHHH
Confidence 367799999999998874443 2333444444555567899999999999999999999999999999866 57799
Q ss_pred HHHHHHHHHhC--CCHHHHHHH--------------HH-HHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 023425 109 GAALLVDAANM--GDPDAQYEL--------------GC-RLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYL 169 (282)
Q Consensus 109 A~~~~~~Aa~~--g~~~A~~~L--------------g~-~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~ 169 (282)
|+.+|+++.+. .+...+..+ |. ++.. ..++++|+.+|+++.+. .++.++..+|.+|.
T Consensus 108 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 108 ALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA----PNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHTSTTTTTC--------------------CCTTS----HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 99999999864 445555554 44 3444 44569999999999886 57999999999999
Q ss_pred cCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCC
Q 023425 170 TGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNP 239 (282)
Q Consensus 170 ~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~ 239 (282)
. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.. .++..+|. ...++
T Consensus 184 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 184 L----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN----GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp H----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred H----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 9 89999999999999875 568999999999998 8899999999999987 46667774 47889
Q ss_pred HHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHH
Q 023425 240 VEKAKEQFEVAAQAGC--------------NLGLRWLQRIEEEE 269 (282)
Q Consensus 240 ~~~A~~~~~~Aa~~g~--------------~~a~~~l~~l~~~~ 269 (282)
+++|+.+|+++.+... +.+...++.+....
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 9999999999998763 45666677766554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-16 Score=136.57 Aligned_cols=196 Identities=13% Similarity=0.002 Sum_probs=158.8
Q ss_pred hcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCC
Q 023425 59 LNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVEN 136 (282)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~ 136 (282)
+......+++++|+.+|+++++.+|.++.+++.+|.+|... .++++|+.+|+++++ +.++.+++.||.+|...+
T Consensus 72 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAEN----ENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 33334456799999999999999999999999999999976 578999999999985 578999999999999844
Q ss_pred CCcCCHHHHHHHHHHHHHcC--C----------HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC----CHHHHHHH
Q 023425 137 DYVQSDQQAFYYIEKAVDQL--H----------PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG----HAGAAIAY 200 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~g--~----------~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g----~~~a~~~L 200 (282)
++++|+.+|+++.+.. + +.....+|.+|.. .+++++|+.+|+++++.. ++.+++++
T Consensus 148 ----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 148 ----HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD----SSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp ----CHHHHHHHHHHHHHHCHHHHCC-------------------C----CHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 5599999999998862 2 2333455888888 899999999999998853 68999999
Q ss_pred HHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHh
Q 023425 201 GSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 201 g~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
|.+|.. .+++++|+.+|+++.+ .++.++|. ...+++++|+.+|+++.+.. ++.+...++.+.....
T Consensus 220 ~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 220 GVLFHL----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 999998 8999999999999987 46778884 47889999999999999975 5777888888776554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=9.4e-16 Score=127.22 Aligned_cols=195 Identities=20% Similarity=0.150 Sum_probs=153.3
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhc
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRV 134 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 134 (282)
..+......+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++..
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSV----NELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp --------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 3334444556799999999999999999999999999999866 577999999999985 5689999999999998
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQV 210 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~ 210 (282)
..++++|+.+|+++.+. .++.++..+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|..
T Consensus 104 ----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 171 (243)
T 2q7f_A 104 ----KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLALPYLQRAVELNENDTEARFQFGMCLAN---- 171 (243)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----
T ss_pred ----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----
Confidence 44559999999999886 578999999999998 89999999999999875 568899999999998
Q ss_pred cccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Q 023425 211 PECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEE 267 (282)
Q Consensus 211 ~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~ 267 (282)
.+++++|+.+++++.. ..+..+|. ...+++++|+.+|+++.+.. ++.+...++.+..
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 8889999999999987 35666773 47889999999999999876 5666666666554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-15 Score=139.60 Aligned_cols=173 Identities=14% Similarity=0.035 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|.++.+++.+|.+|... .++++|+.+|+++.+ +.++.+++.+|.+|.. ..+++
T Consensus 387 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 458 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE----GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ----LGNIL 458 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----HTCHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCCHH
Confidence 4455555555555544455555555555554433 234555555555443 2344455555555444 22235
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc------C-C--HHHHHHHHHHHHcCCCCcc
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK------G-H--AGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------g-~--~~a~~~Lg~~y~~g~g~~~ 212 (282)
+|+.+|+++.+. .++.++..+|.+|.. .+++++|+.+|+++.+. . + +.++..+|.+|.. .+
T Consensus 459 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g 530 (597)
T 2xpi_A 459 LANEYLQSSYALFQYDPLLLNELGVVAFN----KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK----LK 530 (597)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH----hc
Confidence 555555555443 344555555555554 45555555555555442 1 1 3445555555554 44
Q ss_pred cHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 213 CLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 213 ~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
++++|..+|+++.+ ..+..+|. ...+++++|+.+|+++.+..
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 55555555555543 23333442 24445555555555555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-15 Score=133.02 Aligned_cols=207 Identities=14% Similarity=0.017 Sum_probs=166.0
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++.+.+++...+. .....+..+..+...+++++|+.+|+++++.+|+++.+++.+|.++... .++++
T Consensus 76 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~----g~~~~ 150 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE----SLQRQ 150 (368)
T ss_dssp HTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHH
Confidence 378899999999998874432 3344455555555667899999999999999999999999999999865 34566
Q ss_pred HHHHHHHHHh---------------------------------------------------CC--CHHHHHHHHHHHhcC
Q 023425 109 GAALLVDAAN---------------------------------------------------MG--DPDAQYELGCRLRVE 135 (282)
Q Consensus 109 A~~~~~~Aa~---------------------------------------------------~g--~~~A~~~Lg~~y~~g 135 (282)
|+.+|+++++ +. ++.+++.+|.+|..
T Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~- 229 (368)
T 1fch_A 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL- 229 (368)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH-
Confidence 6666555543 23 68899999999998
Q ss_pred CCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc
Q 023425 136 NDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVP 211 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~ 211 (282)
..++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++++|.+|.. .
T Consensus 230 ---~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~ 298 (368)
T 1fch_A 230 ---SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN----L 298 (368)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----H
T ss_pred ---cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----C
Confidence 44559999999999986 679999999999999 89999999999999875 578999999999998 8
Q ss_pred ccHHHHHHHHHHHHHH-----------------Hchhchh--ccCCCHHHHHHHHHHHHH
Q 023425 212 ECLTKLNAKRVSAAKK-----------------ARANLES--NLMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 212 ~~~~~A~~~~~~a~~~-----------------a~~~lg~--~~~~~~~~A~~~~~~Aa~ 252 (282)
+++++|+.+|+++... ++..+|. ...+++++|..+++++.+
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999999999863 2334552 366777778877776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-16 Score=144.23 Aligned_cols=204 Identities=15% Similarity=0.079 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Q 023425 33 NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLL-KTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAA 111 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~ 111 (282)
.++++..+..... .........+..+..+...+++ ++|+.+|+++++.+|+++.+++.||.+|... .++++|+.
T Consensus 84 ~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK----GDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHHHHH
T ss_pred HHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHH
Confidence 4455554443322 1222344455555555556677 7777777777777777777777777777754 46677777
Q ss_pred HHHHHHhCC-CHHHHHHHHHHHhcC-CCCc----CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc--------
Q 023425 112 LLVDAANMG-DPDAQYELGCRLRVE-NDYV----QSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVK-------- 175 (282)
Q Consensus 112 ~~~~Aa~~g-~~~A~~~Lg~~y~~g-~~~~----~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~-------- 175 (282)
+|++|++.. ++.++.+||.+|... .+.. .++++|+.+|+++++. .++.++++||.+|.. .
T Consensus 159 ~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~ 234 (474)
T 4abn_A 159 CFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS----LYFNTGQNP 234 (474)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHTTCCH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHHhhcccc
Confidence 777776432 367777777777662 1111 4457777777777765 567777777777765 4
Q ss_pred cCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc--cCCCHHH
Q 023425 176 KDIASALWCFHRASEK-----GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN--LMNPVEK 242 (282)
Q Consensus 176 ~d~~~A~~~~~~A~~~-----g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~--~~~~~~~ 242 (282)
+++++|+.+|++|++. .++.+++++|.+|.. .+++++|+.+|+++.+ .++.+++.. ..+++++
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY----EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777663 457777777777776 6777777777777765 244445422 3345555
Q ss_pred HHHHHHH
Q 023425 243 AKEQFEV 249 (282)
Q Consensus 243 A~~~~~~ 249 (282)
|+..+.+
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 5554443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-14 Score=131.10 Aligned_cols=222 Identities=14% Similarity=0.022 Sum_probs=110.5
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.|.+++...+. .....+..+......+++++|+.+|+++++.+|.++.+++.+|.+|... .++++|
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A 113 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ----GKLDEA 113 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHH
Confidence 44555555555555442221 1222222333333334455555555555555555555555555555543 344555
Q ss_pred HHHHHHHHh---------------------------------------------------CCCHHHHHHHHHHHhcCCCC
Q 023425 110 AALLVDAAN---------------------------------------------------MGDPDAQYELGCRLRVENDY 138 (282)
Q Consensus 110 ~~~~~~Aa~---------------------------------------------------~g~~~A~~~Lg~~y~~g~~~ 138 (282)
+.+|+++++ +.++.+++.+|.+|...+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (450)
T 2y4t_A 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193 (450)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCH
Confidence 555555543 23444455555555442222
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHH------------HH
Q 023425 139 VQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAY------------GS 202 (282)
Q Consensus 139 ~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~L------------g~ 202 (282)
++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|++++.. .++.+...+ |.
T Consensus 194 ----~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 194 ----RKAISDLKAASKLKNDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp ----GGGHHHHHHHHHHHCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555443 445555555555555 55555555555555443 233333322 55
Q ss_pred HHHcCCCCcccHHHHHHHHHHHHHH----------Hchhch--hccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Q 023425 203 LLLRGVQVPECLTKLNAKRVSAAKK----------ARANLE--SNLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEE 268 (282)
Q Consensus 203 ~y~~g~g~~~~~~~A~~~~~~a~~~----------a~~~lg--~~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~ 268 (282)
++.. .+++++|+.+|+++... .+.++| ....+++++|+.+|+++.+.. ++.+...++.+...
T Consensus 266 ~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 341 (450)
T 2y4t_A 266 ELIR----DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341 (450)
T ss_dssp HHHH----HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 5554 45555555555555441 233344 235566677777777766543 44555555555543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-15 Score=135.52 Aligned_cols=209 Identities=13% Similarity=0.069 Sum_probs=174.8
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++.+.+++...+. ....+..+......+++++|+.+|+++++.+|.++.+++.+|.++... .++++
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 328 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL----QDYKN 328 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc----CCHHH
Confidence 367889999999998875544 455566666777788999999999999999999999999999999866 57799
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+.+|+++++ +.++.+++.+|.++... .++++|+.+|+++.+. .++.++..+|.+|.. .+++++|+.+
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 400 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQ----GKFTESEAFFNETKLKFPTLPEVPTFFAEILTD----RGDFDTAIKQ 400 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHH
Confidence 9999999985 56789999999999984 4559999999999887 678899999999998 8999999999
Q ss_pred HHHHHHcC--------CHHHHHHHHHHHHcCCCCc----------ccHHHHHHHHHHHHH------HHchhchh--ccCC
Q 023425 185 FHRASEKG--------HAGAAIAYGSLLLRGVQVP----------ECLTKLNAKRVSAAK------KARANLES--NLMN 238 (282)
Q Consensus 185 ~~~A~~~g--------~~~a~~~Lg~~y~~g~g~~----------~~~~~A~~~~~~a~~------~a~~~lg~--~~~~ 238 (282)
|+++++.. .....+.+|.+|.. . +++++|+.+|+++.. .++..+|. ...+
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILAR----QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHH----HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHH----HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 99997753 12346677788876 5 899999999999987 46777874 4788
Q ss_pred CHHHHHHHHHHHHHhcc
Q 023425 239 PVEKAKEQFEVAAQAGC 255 (282)
Q Consensus 239 ~~~~A~~~~~~Aa~~g~ 255 (282)
++++|+.+|+++.+...
T Consensus 477 ~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 477 KIDEAIELFEDSAILAR 493 (537)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHhCC
Confidence 99999999999999863
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.7e-16 Score=149.25 Aligned_cols=159 Identities=17% Similarity=0.137 Sum_probs=142.6
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C
Q 023425 81 ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L 156 (282)
Q Consensus 81 ~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g 156 (282)
..|++++++++||.+|... .++++|+.+|++|++ ++++.++++||.+|...+ ++++|+.+|++|++. +
T Consensus 4 s~P~~a~al~nLG~~~~~~----G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g----~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQ----GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG----KLQEALMHYKEAIRISPT 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTT
T ss_pred CCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCC
Confidence 4689999999999999976 577999999999985 689999999999999954 459999999999987 7
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HH
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KA 228 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a 228 (282)
++.++++||.+|.. .+++++|+++|++|++. +++.++++||.+|.. .+++++|+.+|++|++ .+
T Consensus 76 ~~~a~~nLg~~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a 147 (723)
T 4gyw_A 76 FADAYSNMGNTLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDA 147 (723)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHH
Confidence 89999999999999 99999999999999875 679999999999999 8999999999999998 58
Q ss_pred chhchh--ccCCCHHHHHHHHHHHHHhcc
Q 023425 229 RANLES--NLMNPVEKAKEQFEVAAQAGC 255 (282)
Q Consensus 229 ~~~lg~--~~~~~~~~A~~~~~~Aa~~g~ 255 (282)
+.++|. ...+++++|.++|+++.+...
T Consensus 148 ~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 148 YCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 889984 478899999999999988653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-15 Score=122.08 Aligned_cols=182 Identities=13% Similarity=0.038 Sum_probs=143.8
Q ss_pred hhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCC
Q 023425 65 IPLLKTAKENFELALEADN-SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~-g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d 141 (282)
.+++++|+.+|+++++.+| .++.+++++|.++... .++++|+.+|+++++ +.++.+++.+|.+|.. ..+
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~ 91 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI----KKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD----MKN 91 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH----TTC
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh----hcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH----ccc
Confidence 4569999999999999998 9999999999999976 678999999999985 5689999999999999 455
Q ss_pred HHHHHHHHHHHHHc--CCH-------HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCC
Q 023425 142 DQQAFYYIEKAVDQ--LHP-------GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG----HAGAAIAYGSLLLRGV 208 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g~~-------~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g----~~~a~~~Lg~~y~~g~ 208 (282)
+++|+.+|+++++. .++ .+++.+|.++.. .+++++|+.+|+++++.. ++.+++++|.+|..
T Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-- 165 (228)
T 4i17_A 92 NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN-- 165 (228)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH--
Confidence 59999999999986 566 679999999999 899999999999998865 45889999999975
Q ss_pred CCcccHHHHHHHHHHHHHHH------chhchhccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Q 023425 209 QVPECLTKLNAKRVSAAKKA------RANLESNLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEE 267 (282)
Q Consensus 209 g~~~~~~~A~~~~~~a~~~a------~~~lg~~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~ 267 (282)
.+. ..+.++.... +........+++++|+.+|++|.+.. ++.+...|+.+..
T Consensus 166 --~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 166 --NGA-----DVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp --HHH-----HHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred --HHH-----HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 222 2222222110 00111223445789999999999976 5667777777654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-14 Score=132.87 Aligned_cols=198 Identities=15% Similarity=0.005 Sum_probs=164.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCH-HHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCC
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACK-AMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~-~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d 141 (282)
...+++++..++......|.++.+++.+|.++... .++ ++|+.+|++|++ ++++++++.||.+|.. ..+
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~----g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~ 152 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVT----PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK----KGD 152 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSS----SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTC
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhc----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCC
Confidence 35588899999999988999999999999999865 678 999999999974 6789999999999998 455
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHhc-CCCCc----cCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcC----CC
Q 023425 142 DQQAFYYIEKAVDQ-LHPGALYLLGTVYLT-GDCVK----KDIASALWCFHRASEK--GHAGAAIAYGSLLLRG----VQ 209 (282)
Q Consensus 142 ~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~-g~g~~----~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g----~g 209 (282)
+++|+.+|+++++. .++.++.+||.+|.. +.+.. +++++|+.+|++|++. .++.++++||.+|..- ..
T Consensus 153 ~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 153 VTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 69999999999987 358999999999998 11111 9999999999999875 5799999999999861 00
Q ss_pred CcccHHHHHHHHHHHHHH---------Hchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHh
Q 023425 210 VPECLTKLNAKRVSAAKK---------ARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 210 ~~~~~~~A~~~~~~a~~~---------a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
..+++++|+.+|+++... +++++|. ...+++++|+.+|++|.+.. ++.+...++.+.....
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 128899999999999872 4567774 47889999999999999876 6667777777766543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-14 Score=135.10 Aligned_cols=223 Identities=9% Similarity=-0.104 Sum_probs=182.1
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++++.+.+...+. ........+......+++++|+..|+++++..|.++.+++.||.+|... .++++|
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A 392 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV----NKISEA 392 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT----TCHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh----ccHHHH
Confidence 67899999999887753321 1111112222223456799999999999999999999999999999976 577999
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+.+|+++.+ +.++.+++.+|.+|.. ..++++|+.+|+++.+. .++.++..+|.+|.. .+++++|+.+|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 464 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIGFAHSFAI----EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ----LGNILLANEYL 464 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----HTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 999999975 5789999999999998 45559999999999887 578999999999999 89999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH-------------Hchhch--hccCCCHHHHHHHHH
Q 023425 186 HRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-------------ARANLE--SNLMNPVEKAKEQFE 248 (282)
Q Consensus 186 ~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------a~~~lg--~~~~~~~~~A~~~~~ 248 (282)
+++.+. .++.++..+|.+|.. .+++++|+.+|+++.+. .+..+| ....+++++|+.+|+
T Consensus 465 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 465 QSSYALFQYDPLLLNELGVVAFN----KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999774 578999999999998 88999999999999763 345566 347899999999999
Q ss_pred HHHHhc--cHHHHHHHHHHHHHH
Q 023425 249 VAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 249 ~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
++.+.+ ++.+...++.+....
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCCChHHHHHHHHHHHHh
Confidence 999976 567777787776654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=137.19 Aligned_cols=215 Identities=14% Similarity=0.060 Sum_probs=157.2
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcC---CCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELND---RRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
+++++|++.|.+++...+... ......+.. .+..++.++|+..|++|++.+|.++.++..+|..+........+.+
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~-~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNP-EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------C
T ss_pred ccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHH
Confidence 468899999999887544321 111111111 1122445778899999999999999999999988776655556778
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC-----------
Q 023425 108 MGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGD----------- 172 (282)
Q Consensus 108 ~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~----------- 172 (282)
+|+.+|+++.+ +.++.++.++|.+|...+ ++++|+.+|++|.+. .++.++++||.+|..-.
T Consensus 231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKD----EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHcC----chHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999874 578999999999999844 449999999999886 68899999998885310
Q ss_pred ----CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH---------HHchhchh---
Q 023425 173 ----CVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK---------KARANLES--- 234 (282)
Q Consensus 173 ----g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------~a~~~lg~--- 234 (282)
.....+++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.. ..++.+|.
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL----ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH----TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH----hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 0134467888888888775 457788999999998 8899999999999986 23445553
Q ss_pred ccCCCHHHHHHHHHHHHHhc
Q 023425 235 NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 235 ~~~~~~~~A~~~~~~Aa~~g 254 (282)
...+++++|+.+|++|.+..
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSC
T ss_pred HHCCCHHHHHHHHHHHHhcC
Confidence 36789999999999998764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=121.73 Aligned_cols=175 Identities=15% Similarity=0.028 Sum_probs=153.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|+++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.+|.. ..+++
T Consensus 51 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~ 122 (252)
T 2ho1_A 51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTE----MEPKLADEEYRKALASDSRNARVLNNYGGFLYE----QKRYE 122 (252)
T ss_dssp TCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHH
T ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH----HhHHH
Confidence 4589999999999999999999999999999976 578999999999985 5689999999999998 44559
Q ss_pred HHHHHHHHHHH--c--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 144 QAFYYIEKAVD--Q--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 144 ~A~~~~~kAa~--~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
+|+.+|+++.. . .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 194 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK----EREYVPA 194 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHH
Confidence 99999999988 3 568899999999999 89999999999999875 468999999999998 8999999
Q ss_pred HHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhccH
Q 023425 218 NAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 218 ~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g~~ 256 (282)
..+++++.. ..+..++. ...+++++|..+++++.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 999999986 34445553 3788999999999999987743
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-15 Score=125.78 Aligned_cols=181 Identities=10% Similarity=-0.057 Sum_probs=152.4
Q ss_pred cccchHHHHHHHHHHhhhhh--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCH
Q 023425 29 LHSRNKKAMELIAKGWSALK--EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~ 106 (282)
..+++++|++.+.+++.... ......++..+..+...+++++|+.+|+++++.+|.++.++..+|.+|... .++
T Consensus 49 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~ 124 (272)
T 3u4t_A 49 ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK----GNF 124 (272)
T ss_dssp HTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT----TCH
T ss_pred HHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc----cCH
Confidence 37889999999999988221 222223455555555567899999999999999999999999999999976 678
Q ss_pred HHHHHHHHHHHh--CCCHHHHHHHH-HHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC---H
Q 023425 107 AMGAALLVDAAN--MGDPDAQYELG-CRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKD---I 178 (282)
Q Consensus 107 ~~A~~~~~~Aa~--~g~~~A~~~Lg-~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d---~ 178 (282)
++|+.+|+++++ +.++.+++++| .+|..+ ++++|+.+|+++++. .++.+++.+|.++.. .++ +
T Consensus 125 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~----~~~~~~~ 195 (272)
T 3u4t_A 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-----EYVKADSSFVKVLELKPNIYIGYLWRARANAA----QDPDTKQ 195 (272)
T ss_dssp HHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HSTTCSS
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cCcchhh
Confidence 999999999985 67899999999 777764 779999999999987 678999999999987 555 8
Q ss_pred HHHHHHHHHHHHcC----C------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 179 ASALWCFHRASEKG----H------AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 179 ~~A~~~~~~A~~~g----~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
++|+.+|+++++.. + ..++..||.+|.. .+++++|+.+|+++.+
T Consensus 196 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 196 GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI----NRDKVKADAAWKNILA 249 (272)
T ss_dssp CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 88999999998752 2 3689999999998 8999999999999987
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-14 Score=133.39 Aligned_cols=224 Identities=11% Similarity=-0.002 Sum_probs=182.3
Q ss_pred ccchHHHHHHHHHHhhhhhHHH------HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCC
Q 023425 30 HSRNKKAMELIAKGWSALKEVD------RVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPG 103 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~ 103 (282)
.+++++|++.+.+.+...+... ....+..+......+++++|+.+|+++++.+|. +.+++.+|.++...
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~---- 289 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADK---- 289 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCS----
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHh----
Confidence 4578899998888877444321 223444444555567899999999999999998 99999999999865
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIA 179 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~ 179 (282)
.++++|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|+++.+. .++.+++.+|.+|.. .++++
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~ 361 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI----LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFT 361 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Confidence 566999999999985 5789999999999998 45559999999999987 678999999999999 89999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------Hchhc------hh--ccC------
Q 023425 180 SALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ARANL------ES--NLM------ 237 (282)
Q Consensus 180 ~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------a~~~l------g~--~~~------ 237 (282)
+|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++... .+..+ |. ...
T Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 362 ESEAFFNETKLKFPTLPEVPTFFAEILTD----RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 999999999876 568899999999998 89999999999999873 22222 21 133
Q ss_pred ----CCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHh
Q 023425 238 ----NPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 238 ----~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
+++++|+.+|+++.+.. ++.+...++.+.....
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 89999999999999876 5677888888776543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.8e-15 Score=131.20 Aligned_cols=49 Identities=8% Similarity=-0.139 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Q 023425 65 IPLLKTAKENFELALEA------DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA 117 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~------~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa 117 (282)
.+++++|+.+|+++++. ++..+.+++.+|.+|... .++++|+.+|++++
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al 153 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM----GRFDEAAICCERHL 153 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 34455555555555443 333444455555554433 23455555555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-14 Score=121.44 Aligned_cols=209 Identities=12% Similarity=-0.011 Sum_probs=166.5
Q ss_pred ccchHHHHHHHHHHhhhh---hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCH
Q 023425 30 HSRNKKAMELIAKGWSAL---KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACK 106 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~ 106 (282)
.+++++|++.+.+++... .+......+..+..+...+++++|+.+|+++++.+|.++.+++.+|.+|... .++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----~~~ 93 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA----GNF 93 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT----TCH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----cCH
Confidence 477999999999988752 2344555666666666778899999999999999999999999999999976 578
Q ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 107 AMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 107 ~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
++|+.+|+++++ +.++.+++.+|.+|.. ..++++|+.+|+++.+. .++.....++.++. .+++++|+
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~A~ 164 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-----KLDEKQAK 164 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHCHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----hcCHHHHH
Confidence 999999999986 5789999999999998 45559999999999987 56666666665543 58999999
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH----------HHchhchh--ccCCCHHHHHHHHHH
Q 023425 183 WCFHRASEKGH-AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----------KARANLES--NLMNPVEKAKEQFEV 249 (282)
Q Consensus 183 ~~~~~A~~~g~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----------~a~~~lg~--~~~~~~~~A~~~~~~ 249 (282)
.+|++++.... ....+.++.++.. ..+.++|+..++++.. ..+..+|. ...+++++|+.+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 165 EVLKQHFEKSDKEQWGWNIVEFYLG----NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHHHHHSCCCSTHHHHHHHHTT----SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHH----hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999887532 2223446666665 5566888888888753 45667774 478899999999999
Q ss_pred HHHhcc
Q 023425 250 AAQAGC 255 (282)
Q Consensus 250 Aa~~g~ 255 (282)
+.+..+
T Consensus 241 al~~~p 246 (275)
T 1xnf_A 241 AVANNV 246 (275)
T ss_dssp HHTTCC
T ss_pred HHhCCc
Confidence 999874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-14 Score=132.10 Aligned_cols=223 Identities=13% Similarity=0.009 Sum_probs=157.9
Q ss_pred ccchHHHHHHHHHHhhhh-------------hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSAL-------------KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLH 96 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~ 96 (282)
.+++++|++.+.+++... ........+..+......+++++|+.+|+++++.+|. +.+++.+|.++
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~ 280 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIM 280 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHH
Confidence 577888888888877621 1233344445555555567788899999998888888 88888888888
Q ss_pred hcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 023425 97 LKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGD 172 (282)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~ 172 (282)
... .++++|+.+|+++++ +.++.++..+|.++...+.. ++|+.+|+++.+. .++.++..+|.+|..
T Consensus 281 ~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 350 (514)
T 2gw1_A 281 ADR----NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY----DQAGKDFDKAKELDPENIFPYIQLACLAYR-- 350 (514)
T ss_dssp HTS----SCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT----THHHHHHHHHHHTCSSCSHHHHHHHHHTTT--
T ss_pred HHC----CCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHhChhhHHHHHHHHHHHHH--
Confidence 865 344778888888875 35777888888888774444 7888888888765 467777888888777
Q ss_pred CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------------Hchhchhc--c
Q 023425 173 CVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------------ARANLESN--L 236 (282)
Q Consensus 173 g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------a~~~lg~~--~ 236 (282)
.+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++... +++.+|.. .
T Consensus 351 --~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 351 --ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD----KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp --TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred --cCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 77788888888887664 456777778877777 67777777777777651 45555532 4
Q ss_pred ---CCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 237 ---MNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 237 ---~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
.+++++|+.+|+++.+.. ++.+...++.+....
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 667777777777777654 455555666655543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.4e-15 Score=121.45 Aligned_cols=181 Identities=23% Similarity=0.185 Sum_probs=150.3
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++++.+++...+. .....+..+......+++++|+.+|+++++.+|.++.+++.+|.++... .++++
T Consensus 35 ~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~ 109 (243)
T 2q7f_A 35 EFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK----EMYKE 109 (243)
T ss_dssp -------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred HhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh----ccHHH
Confidence 467789999999988774332 2344444444455567899999999999999999999999999999966 57899
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+.+|+++.+ +.++.+++.+|.++.. ..++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 110 A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 181 (243)
T 2q7f_A 110 AKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLALPYLQRAVELNENDTEARFQFGMCLAN----EGMLDEALSQ 181 (243)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 9999999985 4689999999999998 45569999999999986 689999999999999 9999999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 185 FHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 185 ~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
|+++++. .++.+++.+|.+|.. .+++++|..+|+++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAY----KENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH----TTCTTHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHc
Confidence 9999876 568999999999998 8899999999999987
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.3e-15 Score=131.04 Aligned_cols=217 Identities=14% Similarity=0.004 Sum_probs=143.8
Q ss_pred ccchHHHHHHHHHHhhhh-----hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHhc
Q 023425 30 HSRNKKAMELIAKGWSAL-----KEVDRVIDYCELNDRRLIPLLKTAKENFELALEA------DNSNTHARYWLSKLHLK 98 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~g~~~a~~~Lg~~~~~ 98 (282)
.+++++|++++.+++... ........+..+..+...+++++|+.+|+++++. .+..+.+++.+|.+|..
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 566777777777766542 2233344555555555667777777777777775 45556677777777776
Q ss_pred CCCCCcC-----------------HHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH
Q 023425 99 YHVPGAC-----------------KAMGAALLVDAANM----G----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAV 153 (282)
Q Consensus 99 ~~~~~~~-----------------~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa 153 (282)
. .+ +++|+.+|+++.+. + ...++.++|.+|.. ..++++|+.+|+++.
T Consensus 179 ~----g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 179 K----GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYL----LGDFQAAIEHHQERL 250 (411)
T ss_dssp H----HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred c----CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHH
Confidence 5 45 67777777777542 2 24577777777777 344477777777777
Q ss_pred Hc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC----C----HHHHHHHHHHHHcCCCCcccHHHH
Q 023425 154 DQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG----H----AGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 154 ~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g----~----~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
+. ++ ..+++.+|.+|.. .+++++|+.+|+++++.. + ..++..+|.+|.. .+++++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 322 (411)
T 4a1s_A 251 RIAREFGDRAAERRANSNLGNSHIF----LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL----LHEFNTA 322 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCCHHHH
Confidence 64 22 2367777777777 777777777777776532 1 5567777777776 6777777
Q ss_pred HHHHHHHHHH------------Hchhchh--ccCCCHHHHHHHHHHHHHhccHHHHHHH
Q 023425 218 NAKRVSAAKK------------ARANLES--NLMNPVEKAKEQFEVAAQAGCNLGLRWL 262 (282)
Q Consensus 218 ~~~~~~a~~~------------a~~~lg~--~~~~~~~~A~~~~~~Aa~~g~~~a~~~l 262 (282)
..+++++... ++..+|. ...+++++|+.+|++|.+.-........
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 381 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXXXX 381 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 7777777652 4445553 3667777788877777777776654443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-14 Score=131.73 Aligned_cols=83 Identities=13% Similarity=-0.096 Sum_probs=61.4
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.|.+++...+ .....+..+..+...+++++|+.+|+++++.+|+++.+++.+|.+|... .++++|
T Consensus 19 ~g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A 92 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELKE--DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL----GKFADA 92 (514)
T ss_dssp TSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred hccHHHHHHHHHHHHhcCc--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH----hhHHHH
Confidence 4668999999998887554 2344555555555667899999999999999999999999999988765 345666
Q ss_pred HHHHHHHHh
Q 023425 110 AALLVDAAN 118 (282)
Q Consensus 110 ~~~~~~Aa~ 118 (282)
+..|+++.+
T Consensus 93 ~~~~~~~~~ 101 (514)
T 2gw1_A 93 MFDLSVLSL 101 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-14 Score=119.66 Aligned_cols=181 Identities=13% Similarity=0.013 Sum_probs=154.4
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++++.+++...+. .....+..+......+++++|+.+|+++++.+|.++.+++.+|.++... .++++
T Consensus 49 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~ 123 (252)
T 2ho1_A 49 QRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ----KRYEE 123 (252)
T ss_dssp HTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred HcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH----hHHHH
Confidence 367789999999998774332 2334444444455567899999999999999999999999999999875 57899
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 109 GAALLVDAAN----MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 109 A~~~~~~Aa~----~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
|+.+|+++++ +.++.+++.+|.++... .++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 195 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQM----KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK----EREYVPAR 195 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHH
Confidence 9999999987 45788999999999984 4559999999999986 579999999999999 89999999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 183 WCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 183 ~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+|+++++. .++.++..++.+|.. .+++++|..+++++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKV----FEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence 999999875 578899999999998 7899999999999876
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=129.36 Aligned_cols=213 Identities=14% Similarity=0.058 Sum_probs=146.0
Q ss_pred cccchHHHHHHHHHHhhhhh-----HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHH
Q 023425 29 LHSRNKKAMELIAKGWSALK-----EVDRVIDYCELNDRRLIPLLKTAKENFELALEA-------DNSNTHARYWLSKLH 96 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~g~~~a~~~Lg~~~ 96 (282)
..+++++|++++.+++.... .......+..+..+...+++++|+.+|++|++. .++.+.++++||.+|
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 35778888888888876422 223345555555555667788888888888875 233345788888888
Q ss_pred hcCCCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH--------cCCHHH
Q 023425 97 LKYHVPGACKAMGAALLVDAANM----GD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD--------QLHPGA 160 (282)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~--------~g~~~A 160 (282)
... +++++|+.+|++|++. ++ ..++++||.+|.. ..++++|+.+|++|.+ ...+.+
T Consensus 195 ~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 195 LDL----KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHh----cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 865 5678888888888742 32 2478888888887 4445888888888887 234677
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CCHH---HHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-----HH
Q 023425 161 LYLLGTVYLTGDCVKKDIASALWCFHRASEK----GHAG---AAIAYGSLLLRGVQVPECLTKLNAKRVSAAK-----KA 228 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~~~---a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-----~a 228 (282)
+++||.+|.. .+++++|+.+|++|++. +++. .+..||.+|...... ..+++|+.++++... ..
T Consensus 267 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 267 YFLITQIHYK----LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE-EAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH-HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHCcCHHHHHHH
Confidence 8888888888 78888888888888664 2322 246678877762111 226777777776532 34
Q ss_pred chhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 229 RANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 229 ~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
+..+|. ...+++++|..+|++|.+..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 556663 37778888888888887643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-13 Score=111.79 Aligned_cols=175 Identities=12% Similarity=-0.019 Sum_probs=146.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++... ..++
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~ 93 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYL----KVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR---LNRP 93 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT---TCCH
T ss_pred HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---cCcH
Confidence 35699999999999999999999999999999865 577999999999975 56899999999999884 0455
Q ss_pred HHHHHHHHHHHH--c--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHH
Q 023425 143 QQAFYYIEKAVD--Q--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTK 216 (282)
Q Consensus 143 ~~A~~~~~kAa~--~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~ 216 (282)
++|+.+|+++.+ . .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~ 165 (225)
T 2vq2_A 94 AESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML----AGQLGD 165 (225)
T ss_dssp HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHH
T ss_pred HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----cCCHHH
Confidence 999999999998 3 347899999999998 89999999999999875 568899999999998 889999
Q ss_pred HHHHHHHHHHHHc-------hhch--hccCCCHHHHHHHHHHHHHhc
Q 023425 217 LNAKRVSAAKKAR-------ANLE--SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 217 A~~~~~~a~~~a~-------~~lg--~~~~~~~~~A~~~~~~Aa~~g 254 (282)
|..+++++....- ..++ ....++.+.|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999987432 1222 236778889999888887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-14 Score=131.42 Aligned_cols=220 Identities=17% Similarity=0.060 Sum_probs=165.0
Q ss_pred ccchHHHHHHHHHHhhhhhHH-------HHHHHHHhhcCC--CchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCC
Q 023425 30 HSRNKKAMELIAKGWSALKEV-------DRVIDYCELNDR--RLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYH 100 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~ 100 (282)
.+++++|++++.+++...... ....+...+... ...+++++|+.+|++|++.+|+++++++.+|.++...+
T Consensus 107 ~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 186 (472)
T 4g1t_A 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD 186 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 688999999999987643311 111111111110 11357999999999999999999999999999865321
Q ss_pred CCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCcc
Q 023425 101 VPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKK 176 (282)
Q Consensus 101 ~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~ 176 (282)
.. .+.++|+..|++|++ +.++.++.++|..+..-.....+.++|+.+|+++... .++.++.++|.+|.. .+
T Consensus 187 ~~-~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~----~~ 261 (472)
T 4g1t_A 187 NW-PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR----KD 261 (472)
T ss_dssp HS-CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----TT
T ss_pred Cc-hHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH----cC
Confidence 11 344778999999975 6789999999988776555566779999999999886 689999999999999 99
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC---------------CCcccHHHHHHHHHHHHH------HHchhch
Q 023425 177 DIASALWCFHRASEK--GHAGAAIAYGSLLLRGV---------------QVPECLTKLNAKRVSAAK------KARANLE 233 (282)
Q Consensus 177 d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~---------------g~~~~~~~A~~~~~~a~~------~a~~~lg 233 (282)
++++|+.+|++|++. .++.++++||.+|.... .....++.|+.+|+++.. .++.++|
T Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg 341 (472)
T 4g1t_A 262 EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILA 341 (472)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHH
T ss_pred chHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHH
Confidence 999999999999875 57899999999986310 012346778888888887 3566777
Q ss_pred h--ccCCCHHHHHHHHHHHHHhc
Q 023425 234 S--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 234 ~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
. ...+++++|+.+|++|.+..
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHhccHHHHHHHHHHHHhcC
Confidence 4 47889999999999999865
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-14 Score=123.37 Aligned_cols=233 Identities=12% Similarity=0.023 Sum_probs=169.8
Q ss_pred hhhhhhHHhhhhhhhcchhhhhhc----ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc
Q 023425 6 SKASTLKSAALGLLQSNQHQKRWL----HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEA 81 (282)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 81 (282)
..|..++..+.-++.+........ .+++++|++.|.++.. .+.. .+++++|+.+|++|++.
T Consensus 2 ~~a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--------~~~~-------~g~~~~A~~~~~~al~~ 66 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAAT--------IYRL-------RKELNLAGDSFLKAADY 66 (292)
T ss_dssp CCHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHH--------HHHH-------TTCTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHH--------HHHH-------cCCHHHHHHHHHHHHHH
Confidence 345666666666655432221222 2359999999988733 2222 24599999999999986
Q ss_pred CC--C----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhcCCCCcCCHHHHHH
Q 023425 82 DN--S----NTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN----MGD----PDAQYELGCRLRVENDYVQSDQQAFY 147 (282)
Q Consensus 82 ~~--g----~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~ 147 (282)
.+ + .+.++.++|.+|... .++++|+.+|++|++ .|+ +.++.++|.+|... ..++++|+.
T Consensus 67 ~~~~~~~~~~a~~~~~lg~~~~~~----g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~---lg~~~~A~~ 139 (292)
T 1qqe_A 67 QKKAGNEDEAGNTYVEAYKCFKSG----GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND---LHDYAKAID 139 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---hcCHHHHHH
Confidence 32 2 267899999999876 578999999999985 355 46899999999983 044599999
Q ss_pred HHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHcCCCC
Q 023425 148 YIEKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--H-------AGAAIAYGSLLLRGVQV 210 (282)
Q Consensus 148 ~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~-------~~a~~~Lg~~y~~g~g~ 210 (282)
+|++|++. ++ ..++.++|.+|.. .+++++|+.+|+++++.. + ..+++++|.+|..
T Consensus 140 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~---- 211 (292)
T 1qqe_A 140 CYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA---- 211 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH----
Confidence 99999985 22 5678999999999 899999999999998853 2 2368999999998
Q ss_pred cccHHHHHHHHHHHHHH-----------Hchhchh----ccCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 023425 211 PECLTKLNAKRVSAAKK-----------ARANLES----NLMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEEEE 269 (282)
Q Consensus 211 ~~~~~~A~~~~~~a~~~-----------a~~~lg~----~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~~~ 269 (282)
.++++.|+.+|+++... ....++. ...+++.+|+..|+++....+.. ...+-++++..
T Consensus 212 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~-~~~~~~~k~~~ 284 (292)
T 1qqe_A 212 ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK-ITILNKIKESI 284 (292)
T ss_dssp TTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH-HHHHHHHHHHh
Confidence 89999999999998751 1112331 24567999999999987765443 45555555544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-13 Score=114.91 Aligned_cols=183 Identities=10% Similarity=0.017 Sum_probs=153.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CC-------HHHHHHHHHHHhcC
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GD-------PDAQYELGCRLRVE 135 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~-------~~A~~~Lg~~y~~g 135 (282)
.+++++|+.+|+++++.+ .++.+++.+|.++... .++++|+.+|+++++. .+ +.+++.+|.+|..
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 91 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEK----GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK- 91 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-
T ss_pred hccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH-
Confidence 356999999999999998 9999999999999976 5789999999999863 23 7899999999998
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCccc
Q 023425 136 NDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPEC 213 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~ 213 (282)
..++++|+.+|+++...... +.++.. .+++++|+.+++++.... ++.+++.+|.+|.. .++
T Consensus 92 ---~~~~~~A~~~~~~a~~~~~~------~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 154 (258)
T 3uq3_A 92 ---LGDLKKTIEYYQKSLTEHRT------ADILTK----LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT----KSD 154 (258)
T ss_dssp ---TTCHHHHHHHHHHHHHHCCC------HHHHHH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----TTC
T ss_pred ---cccHHHHHHHHHHHHhcCch------hHHHHH----HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH----hcC
Confidence 45559999999999987322 344555 677899999999998874 57789999999998 899
Q ss_pred HHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHh
Q 023425 214 LTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 214 ~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~ 270 (282)
+++|+.+|+++.. ..+.++|. ...+++++|+.+|+++.+.. ++.+...++.+.....
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 9999999999987 46667774 47889999999999999876 5667777777766543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.4e-14 Score=124.19 Aligned_cols=227 Identities=12% Similarity=-0.002 Sum_probs=165.1
Q ss_pred ccchHHHHHHHHHHhhhhh-----HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHhc
Q 023425 30 HSRNKKAMELIAKGWSALK-----EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN------THARYWLSKLHLK 98 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~------~~a~~~Lg~~~~~ 98 (282)
.+++++|++++.+++.... .......+..+..+...+++++|+.+|+++++..+.. +.+++.+|.+|..
T Consensus 60 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 6788889888888766432 2223344445555555677899999999988754332 4488888888875
Q ss_pred CCCCCcC--------------------HHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 023425 99 YHVPGAC--------------------KAMGAALLVDAANM----G----DPDAQYELGCRLRVENDYVQSDQQAFYYIE 150 (282)
Q Consensus 99 ~~~~~~~--------------------~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~ 150 (282)
. .+ +++|+.+|+++++. + .+.++.++|.+|.. ..++++|+.+|+
T Consensus 140 ~----g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 211 (406)
T 3sf4_A 140 K----GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHE 211 (406)
T ss_dssp H----HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHH
T ss_pred c----CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHH
Confidence 4 34 68888888888642 2 24578888988888 445599999999
Q ss_pred HHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccH
Q 023425 151 KAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECL 214 (282)
Q Consensus 151 kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~ 214 (282)
++.+. ++ +.++.++|.+|.. .+++++|+.+|+++++. ++ +.++.++|.+|.. .+++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~ 283 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL----LQDY 283 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH----hCcH
Confidence 98864 32 3488889999988 89999999999998753 22 6678899999988 7889
Q ss_pred HHHHHHHHHHHHH------------Hchhchh--ccCCCHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhc
Q 023425 215 TKLNAKRVSAAKK------------ARANLES--NLMNPVEKAKEQFEVAAQAG--------CNLGLRWLQRIEEEEKRL 272 (282)
Q Consensus 215 ~~A~~~~~~a~~~------------a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--------~~~a~~~l~~l~~~~~~~ 272 (282)
++|..+|+++... ++..+|. ...+++++|+.+|++|.+.. ...+...++.+.....+.
T Consensus 284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999999998762 4445663 36789999999999998763 244666677776655433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-13 Score=111.42 Aligned_cols=182 Identities=11% Similarity=-0.003 Sum_probs=150.9
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++++.+++...+. .....+..+..+...+++++|+.+|+++++.+|.++.+++.+|.++... ..++++
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~~ 95 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR---LNRPAE 95 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT---TCCHHH
T ss_pred HHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---cCcHHH
Confidence 357799999999998874433 2334444444445567899999999999999999999999999999854 046799
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 109 GAALLVDAAN----MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 109 A~~~~~~Aa~----~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 96 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~ 167 (225)
T 2vq2_A 96 SMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML----AGQLGDAD 167 (225)
T ss_dssp HHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHH
T ss_pred HHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----cCCHHHHH
Confidence 9999999998 3457999999999998 44559999999999986 679999999999999 99999999
Q ss_pred HHHHHHHHc---CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 183 WCFHRASEK---GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 183 ~~~~~A~~~---g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+|+++++. .++.++..++.++.. .++.+.+..+++.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKA----LGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHH
Confidence 999999774 678888888888887 6788888888887754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=119.14 Aligned_cols=188 Identities=13% Similarity=-0.002 Sum_probs=155.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|+++.+++.+|.++... .++++|+.+|+++.+ +.++.+++.+|.+|.. ..+++
T Consensus 35 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~ 106 (327)
T 3cv0_A 35 ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAEN----EKDGLAIIALNHARMLDPKDIAVHAALAVSHTN----EHNAN 106 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH----cCCHH
Confidence 4599999999999999999999999999999976 577999999999985 5689999999999998 44559
Q ss_pred HHHHHHHHHHHc--CCHHHHHHH--------------HH-HHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLL--------------GT-VYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLL 204 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~L--------------g~-~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y 204 (282)
+|+.+|+++.+. .+......+ |. ++.. .+++++|+.+|+++++. .++.+++.+|.+|
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA----PNEYRECRTLLHAALEMNPNDAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHTSTTTTTC--------------------CCTTS----HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 999999999986 344444444 54 4655 89999999999999875 4689999999999
Q ss_pred HcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Q 023425 205 LRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 205 ~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~ 269 (282)
.. .+++++|+.+++++.. .++..+|. ...+++++|+.+|+++.+.. ++.+...++.+....
T Consensus 183 ~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 183 NL----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HH----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 98 8999999999999987 45667774 47889999999999999976 567777777776654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-14 Score=117.00 Aligned_cols=164 Identities=15% Similarity=0.069 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHH----------------HHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYW----------------LSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYE 127 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~----------------Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~ 127 (282)
+++++|+.+|+++++.+|+++.+++. +|.+|... .++++|+.+|+++++ +++++++++
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~ 93 (208)
T 3urz_A 18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN----RNYDKAYLFYKELLQKAPNNVDCLEA 93 (208)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 45999999999999999999999998 66666644 455666666666653 456666666
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH-AGAAIAYGSLL 204 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~-~~a~~~Lg~~y 204 (282)
||.+|.. ..++++|+.+|+++++. +++.++++||.+|..-. ..+...+...|+++..... ..+.+++|.++
T Consensus 94 lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~ 167 (208)
T 3urz_A 94 CAEMQVC----RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA--EQEKKKLETDYKKLSSPTKMQYARYRDGLSK 167 (208)
T ss_dssp HHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 6666665 33336666666666654 45666666666654300 1223444555555443322 12445555554
Q ss_pred HcCCCCcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH
Q 023425 205 LRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAG-CNLGLRWLQRIEEEE 269 (282)
Q Consensus 205 ~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g-~~~a~~~l~~l~~~~ 269 (282)
.. .+++++|+.+|++|++.. +..+...|.++.+..
T Consensus 168 ~~------------------------------~~~~~~A~~~~~~al~l~P~~~~~~~l~~i~~~~ 203 (208)
T 3urz_A 168 LF------------------------------TTRYEKARNSLQKVILRFPSTEAQKTLDKILRIE 203 (208)
T ss_dssp HH------------------------------HHTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred HH------------------------------ccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 43 345567888888888765 344556666665443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-13 Score=121.91 Aligned_cols=196 Identities=11% Similarity=-0.047 Sum_probs=151.3
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----C-----CH
Q 023425 58 ELNDRRLIPLLKTAKENFELALEA------DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM----G-----DP 122 (282)
Q Consensus 58 ~~~~~~~~~~~~~A~~~~~~a~~~------~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g-----~~ 122 (282)
.|......+++++|+.+|++|++. .++.+.+++.+|.+|... .++++|+.+|++|.+. + .+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM----KQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 444455567899999999999875 333568999999999976 6789999999999852 2 35
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH----
Q 023425 123 DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASE---- 190 (282)
Q Consensus 123 ~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---- 190 (282)
.++.+||.+|.. ..++++|+.+|++|.+. ++ +.++++||.+|.. .+++++|+.+|++|++
T Consensus 185 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 185 QCHSLFATNFLD----LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHh
Confidence 689999999999 45559999999999875 33 3588999999999 9999999999999988
Q ss_pred ----cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH-----------chhchh--ccCCC---HHHHHHHHHHH
Q 023425 191 ----KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA-----------RANLES--NLMNP---VEKAKEQFEVA 250 (282)
Q Consensus 191 ----~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a-----------~~~lg~--~~~~~---~~~A~~~~~~A 250 (282)
...+.++++||.+|.. .+++++|..+++++.... ...+|. ...++ +.+|+.+++++
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYK----LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred hccchhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 3357789999999998 899999999999998732 234553 25555 88888888877
Q ss_pred HHhc-cHHHHHHHHHHHHHH
Q 023425 251 AQAG-CNLGLRWLQRIEEEE 269 (282)
Q Consensus 251 a~~g-~~~a~~~l~~l~~~~ 269 (282)
-... ...+...|+.+....
T Consensus 333 ~~~~~~~~~~~~la~~y~~~ 352 (383)
T 3ulq_A 333 MLYADLEDFAIDVAKYYHER 352 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHC
Confidence 2211 223445566655543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-14 Score=125.48 Aligned_cols=230 Identities=13% Similarity=-0.020 Sum_probs=176.1
Q ss_pred hcccchHHHHHHHHHHhhhhhHHH---HHHHHHhhcCCCchhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHhc
Q 023425 28 WLHSRNKKAMELIAKGWSALKEVD---RVIDYCELNDRRLIPLLKTAKENFELALEA------DNSNTHARYWLSKLHLK 98 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~g~~~a~~~Lg~~~~~ 98 (282)
...+++++|++++.+++...+... ....+..+..+...+++++|+.+|+++++. .+..+.+++.+|.++..
T Consensus 20 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 99 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 99 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 446789999999999987544321 234455555555668899999999999875 44557799999999986
Q ss_pred CCCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCC-------------C---cCCHHHHHHHHHHHHH
Q 023425 99 YHVPGACKAMGAALLVDAANM----GD----PDAQYELGCRLRVEND-------------Y---VQSDQQAFYYIEKAVD 154 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~g~~-------------~---~~d~~~A~~~~~kAa~ 154 (282)
. .++++|+.+|+++.+. ++ +.++.++|.+|...+. . .+++++|+.+|.++.+
T Consensus 100 ~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 175 (406)
T 3sf4_A 100 L----GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175 (406)
T ss_dssp T----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred c----CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6 5789999999999753 33 5689999999987333 0 0016999999999876
Q ss_pred c----C----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccHHHHH
Q 023425 155 Q----L----HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECLTKLN 218 (282)
Q Consensus 155 ~----g----~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~~~A~ 218 (282)
. + .+.++.++|.+|.. .+++++|+.+|+++++. ++ ..+++++|.+|.. .+++++|.
T Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 247 (406)
T 3sf4_A 176 LVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETAS 247 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHH
Confidence 4 2 35688999999999 99999999999999764 33 4489999999998 89999999
Q ss_pred HHHHHHHH------------HHchhchh--ccCCCHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHH
Q 023425 219 AKRVSAAK------------KARANLES--NLMNPVEKAKEQFEVAAQAGC--------NLGLRWLQRIEEEE 269 (282)
Q Consensus 219 ~~~~~a~~------------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g~--------~~a~~~l~~l~~~~ 269 (282)
.+++++.. ..+.++|. ...+++++|+.+|++|.+... ..+...++.+....
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 99999986 24456663 478899999999999988642 34556666666544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-13 Score=118.06 Aligned_cols=230 Identities=13% Similarity=-0.036 Sum_probs=169.8
Q ss_pred cccchHHHHHHHHHHhhhhhHHH---HHHHHHhhcCCCchhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHhcC
Q 023425 29 LHSRNKKAMELIAKGWSALKEVD---RVIDYCELNDRRLIPLLKTAKENFELALEA------DNSNTHARYWLSKLHLKY 99 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~g~~~a~~~Lg~~~~~~ 99 (282)
..+++++|+.++.+++...+... ....+..+..+...+++++|+.+|+++++. .+..+.+++.+|.++...
T Consensus 17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 45678999999999887543221 234445555555567899999999999875 445577889999999865
Q ss_pred CCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCC----------------cCCHHHHHHHHHHHHHc
Q 023425 100 HVPGACKAMGAALLVDAANM----GD----PDAQYELGCRLRVENDY----------------VQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 100 ~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~g~~~----------------~~d~~~A~~~~~kAa~~ 155 (282)
.++++|+.+|+++.+. ++ ..++..+|.+|...+.. .+.+++|+.+|+++...
T Consensus 97 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 97 ----GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5779999999998753 33 45888999988773330 00168899999888753
Q ss_pred ----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccHHHHHH
Q 023425 156 ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECLTKLNA 219 (282)
Q Consensus 156 ----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~ 219 (282)
++ +.++..+|.+|.. .+++++|+.+|+++++. ++ ..+++++|.+|.. .+++++|..
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 244 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASE 244 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHH
Confidence 32 5678899999998 89999999999998764 33 3488999999998 889999999
Q ss_pred HHHHHHHH------------Hchhch--hccCCCHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHh
Q 023425 220 KRVSAAKK------------ARANLE--SNLMNPVEKAKEQFEVAAQAGC--------NLGLRWLQRIEEEEK 270 (282)
Q Consensus 220 ~~~~a~~~------------a~~~lg--~~~~~~~~~A~~~~~~Aa~~g~--------~~a~~~l~~l~~~~~ 270 (282)
+++++... .+..+| ....+++++|+.+|++|.+... ..+...++.+.....
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 99998762 344566 3478899999999999987643 225556666665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.3e-14 Score=115.63 Aligned_cols=135 Identities=18% Similarity=0.104 Sum_probs=113.2
Q ss_pred hcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 28 WLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
...+++++|++.|.+++...+.......+..+......+++++|+.+|+++++.+|.++.+++.+|.+|... .+++
T Consensus 18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~ 93 (228)
T 4i17_A 18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDM----KNNQ 93 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHT----TCHH
T ss_pred HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHc----ccHH
Confidence 346779999999999988554233344555666666678899999999999999999999999999999976 6789
Q ss_pred HHHHHHHHHHh--CCCH-------HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C--CHHHHHHHHHHHhc
Q 023425 108 MGAALLVDAAN--MGDP-------DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L--HPGALYLLGTVYLT 170 (282)
Q Consensus 108 ~A~~~~~~Aa~--~g~~-------~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g--~~~A~~~Lg~~y~~ 170 (282)
+|+.+|+++++ +.++ .+++++|.++.. ..++++|+.+|+++++. . ++.++++||.+|..
T Consensus 94 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 94 EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 99999999985 5677 679999999998 45559999999999987 4 56899999999976
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=123.54 Aligned_cols=213 Identities=10% Similarity=0.020 Sum_probs=141.6
Q ss_pred cccchHHHHHHHHHHhhhhh-----HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHH
Q 023425 29 LHSRNKKAMELIAKGWSALK-----EVDRVIDYCELNDRRLIPLLKTAKENFELALEADN-------SNTHARYWLSKLH 96 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------g~~~a~~~Lg~~~ 96 (282)
..+++++|++.+.+++.... .......+..+..+...+++++|+.+|++|++..+ +.+.++++||.+|
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 46778888888888776432 22334455555555556778888888888876422 2245677888888
Q ss_pred hcCCCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH-----c--CCHHHH
Q 023425 97 LKYHVPGACKAMGAALLVDAANM----GD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD-----Q--LHPGAL 161 (282)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~-----~--g~~~A~ 161 (282)
... .++++|+.+|++|++. ++ ..++++||.+|.. ..++++|+.+|++|.+ . ..+.++
T Consensus 193 ~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 193 DDF----KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHh----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 765 5678888888888752 33 4577788888877 4445888888888877 3 236778
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-----HHc
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEK----GH---AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK-----KAR 229 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-----~a~ 229 (282)
++||.+|.. .+++++|+.+|++|++. ++ ......|+.+|.... ....+.+|+.++++... ..+
T Consensus 265 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~-~~~~~~~al~~~~~~~~~~~~~~~~ 339 (378)
T 3q15_A 265 FGLSWTLCK----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV-DERKIHDLLSYFEKKNLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhCCChhHHHHHH
Confidence 888888887 78888888888888763 12 334556666666521 11336777777766421 344
Q ss_pred hhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 230 ANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 230 ~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
..+|. ...+++++|..+|++|.+..
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45663 36778888888888887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-13 Score=116.33 Aligned_cols=205 Identities=10% Similarity=-0.041 Sum_probs=154.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEA--DNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
.+++++|+.-+... ..................++.++|++.|++.+.. +|+++.+++.+|.++... ++++
T Consensus 47 ~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~----g~~~ 118 (291)
T 3mkr_A 47 QRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD----QNPD 118 (291)
T ss_dssp TTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT----TCHH
T ss_pred CCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC----CCHH
Confidence 55677777655431 1111122222222333446789999999998865 599999999999999976 5779
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHhcCCCCccCHHHHHH
Q 023425 108 MGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLG----TVYLTGDCVKKDIASALW 183 (282)
Q Consensus 108 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg----~~y~~g~g~~~d~~~A~~ 183 (282)
+|+.+|++ +++++++..+|.+|...++. ++|+.+|+++.+.........++ .++.. .+++++|+.
T Consensus 119 ~Al~~l~~---~~~~~~~~~l~~~~~~~g~~----~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~----~~~~~eA~~ 187 (291)
T 3mkr_A 119 AALRTLHQ---GDSLECMAMTVQILLKLDRL----DLARKELKKMQDQDEDATLTQLATAWVSLAAG----GEKLQDAYY 187 (291)
T ss_dssp HHHHHHTT---CCSHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC----TTHHHHHHH
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC----chHHHHHHH
Confidence 99999999 78999999999999995555 99999999999874333334443 22333 588999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc--cCCCH-HHHHHHHHHHHH
Q 023425 184 CFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN--LMNPV-EKAKEQFEVAAQ 252 (282)
Q Consensus 184 ~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~--~~~~~-~~A~~~~~~Aa~ 252 (282)
+|+++++. .++.+++++|.+|.. .+++++|...|++++. .+++++|.. ..++. +.+..+++++.+
T Consensus 188 ~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 188 IFQEMADKCSPTLLLLNGQAACHMA----QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999885 578999999999999 8999999999999998 478888843 45554 457899999998
Q ss_pred hccHH
Q 023425 253 AGCNL 257 (282)
Q Consensus 253 ~g~~~ 257 (282)
..+..
T Consensus 264 ~~P~~ 268 (291)
T 3mkr_A 264 AHRSH 268 (291)
T ss_dssp HCTTC
T ss_pred hCCCC
Confidence 87433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=111.77 Aligned_cols=136 Identities=12% Similarity=0.084 Sum_probs=114.3
Q ss_pred hcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCC
Q 023425 59 LNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVEN 136 (282)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~ 136 (282)
|......+++++|+..|++++..+|.++.+++.||.+|... +++++|+.+|++++ ++.+++++++||.+|..
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~----~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-- 77 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEA----KEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-- 77 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence 34455678899999999999998888999999999999976 67899999999997 46799999999999998
Q ss_pred CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH-HHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 137 DYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALW-CFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~-~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
..++++|+.+|+++++. +++.++++||.+|.. .+++++|.. |+++|++. +++.++...+.++..
T Consensus 78 --~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 78 --EENTDKAVECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred --cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 44559999999999987 689999999999998 788877665 56888764 688888888888764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-13 Score=116.44 Aligned_cols=211 Identities=13% Similarity=0.026 Sum_probs=164.3
Q ss_pred cccchHHHHHHHHHHhhhhh-----HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHh
Q 023425 29 LHSRNKKAMELIAKGWSALK-----EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN------THARYWLSKLHL 97 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~------~~a~~~Lg~~~~ 97 (282)
..+++++|++++.+++.... .......+..+..+...+++++|+.+|+++++..+.. +.+++.+|.++.
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 55 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 37889999999999876432 2223344455555556678999999999998754332 348899999988
Q ss_pred cCCCCCcC--------------------HHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCCcCCHHHHHHHH
Q 023425 98 KYHVPGAC--------------------KAMGAALLVDAANM----G----DPDAQYELGCRLRVENDYVQSDQQAFYYI 149 (282)
Q Consensus 98 ~~~~~~~~--------------------~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~ 149 (282)
.. .+ +++|+.+|+++.+. + .+.++.++|.++.. ..++++|+.+|
T Consensus 135 ~~----~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 206 (338)
T 3ro2_A 135 AK----GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAH 206 (338)
T ss_dssp HH----HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHH
T ss_pred Hc----CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHH
Confidence 54 34 78999999998642 3 35689999999998 55569999999
Q ss_pred HHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCccc
Q 023425 150 EKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPEC 213 (282)
Q Consensus 150 ~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~ 213 (282)
+++.+. ++ ..++..+|.+|.. .+++++|+.+|+++++. ++ +.++..+|.+|.. .++
T Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~ 278 (338)
T 3ro2_A 207 EQRLLIAKEFGDKAAERRAYSNLGNAYIF----LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL----LQD 278 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH----hcC
Confidence 999875 33 3488999999999 99999999999999764 22 6789999999998 899
Q ss_pred HHHHHHHHHHHHHH------------Hchhchh--ccCCCHHHHHHHHHHHHHhcc
Q 023425 214 LTKLNAKRVSAAKK------------ARANLES--NLMNPVEKAKEQFEVAAQAGC 255 (282)
Q Consensus 214 ~~~A~~~~~~a~~~------------a~~~lg~--~~~~~~~~A~~~~~~Aa~~g~ 255 (282)
+++|..+++++... ++..+|. ...+++++|..+|++|.+...
T Consensus 279 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 99999999999762 4456663 478899999999999998654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.4e-13 Score=111.63 Aligned_cols=192 Identities=10% Similarity=-0.084 Sum_probs=154.6
Q ss_pred CCCchhhHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhc
Q 023425 61 DRRLIPLLKTAKENFELALEA----DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRV 134 (282)
Q Consensus 61 ~~~~~~~~~~A~~~~~~a~~~----~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 134 (282)
.....+++++|+..|+++++. +|+++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.+|..
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL----GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 344568899999999999976 356789999999999976 578999999999985 5689999999999998
Q ss_pred CCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQV 210 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~ 210 (282)
..++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.....++.++.
T Consensus 90 ----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~----- 156 (275)
T 1xnf_A 90 ----AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ----- 156 (275)
T ss_dssp ----TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred ----ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----
Confidence 45559999999999986 689999999999999 89999999999999875 45656666665544
Q ss_pred cccHHHHHHHHHHHHHH------Hchhch-hccCCCHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHH
Q 023425 211 PECLTKLNAKRVSAAKK------ARANLE-SNLMNPVEKAKEQFEVAAQAGC------NLGLRWLQRIEEEE 269 (282)
Q Consensus 211 ~~~~~~A~~~~~~a~~~------a~~~lg-~~~~~~~~~A~~~~~~Aa~~g~------~~a~~~l~~l~~~~ 269 (282)
.+++++|..+++++... .+...+ .....+.++|+..++++.+... +.+...++.+....
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 228 (275)
T 1xnf_A 157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 228 (275)
T ss_dssp HHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc
Confidence 57899999999998873 222222 2355677899999999887664 46667777776644
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-13 Score=105.84 Aligned_cols=146 Identities=15% Similarity=0.035 Sum_probs=128.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++..|.++.+++.+|.++... .++++|+.+|+++.+ +.++.++..+|.++.. ..++
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~ 92 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKT----GAVDRGTELLERSLADAPDNVKVATVLGLTYVQ----VQKY 92 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCH
T ss_pred hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCH
Confidence 35699999999999999999999999999999865 578999999999985 5689999999999998 5556
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHH
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLN 218 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~ 218 (282)
++|+.+|+++... .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|.
T Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~ 164 (186)
T 3as5_A 93 DLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ----MGRHEEAL 164 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCHHHHH
Confidence 9999999999886 689999999999998 89999999999999876 468899999999998 77888777
Q ss_pred HHHHHHHH
Q 023425 219 AKRVSAAK 226 (282)
Q Consensus 219 ~~~~~a~~ 226 (282)
.+++++..
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=117.20 Aligned_cols=213 Identities=13% Similarity=-0.004 Sum_probs=118.7
Q ss_pred ccchHHHHHHHHHHhhhh-------hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSAL-------KEVDRVIDYCELNDRRLIPLLKTAKENFELALEA--------DNSNTHARYWLSK 94 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~g~~~a~~~Lg~ 94 (282)
.+++++|++++.+++... ........+..+..+...+++++|+.+|+++++. .+..+.+++.+|.
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 456677777777766532 1222233344444444456677777777777654 3445566777777
Q ss_pred HHhcCCCCCcCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc------C--
Q 023425 95 LHLKYHVPGACKAMGAALLVDAANM----------GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ------L-- 156 (282)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~------g-- 156 (282)
+|... .++++|+.+|+++.+. ....+++++|.++.. ..++++|+.+|+++.+. +
T Consensus 120 ~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 120 LYGKR----GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN----QGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHTT----TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHc----CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77644 4567777777777642 234566777777766 33347777777777664 1
Q ss_pred --CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCC--CcccHHHHHHHH
Q 023425 157 --HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-----------HAGAAIAYGSLLLRGVQ--VPECLTKLNAKR 221 (282)
Q Consensus 157 --~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-----------~~~a~~~Lg~~y~~g~g--~~~~~~~A~~~~ 221 (282)
.+.++..+|.+|.. .+++++|+.+|+++++.. ....+..++.++..+.. ....+.++..++
T Consensus 192 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLK----QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp HHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 24456677777776 677777777777776521 11122333333332211 122233333444
Q ss_pred HHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 222 VSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 222 ~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
+++.. .++.++|. ...+++++|+.+|++|.+..
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 44432 35556773 47788999999999998764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=116.74 Aligned_cols=213 Identities=12% Similarity=-0.022 Sum_probs=124.7
Q ss_pred cccchHHHHHHHHHHhhhhh-------HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHH
Q 023425 29 LHSRNKKAMELIAKGWSALK-------EVDRVIDYCELNDRRLIPLLKTAKENFELALEA--------DNSNTHARYWLS 93 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~g~~~a~~~Lg 93 (282)
-.+++++|++++.+++.... .......+..+..+...+++++|+.+|+++++. +|..+.+++.+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35667777777777776443 223344555555555667777777777777765 345566777777
Q ss_pred HHHhcCCCCCcCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--------
Q 023425 94 KLHLKYHVPGACKAMGAALLVDAANM----------GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-------- 155 (282)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-------- 155 (282)
.+|... .++++|+.+|+++++. ..+.++.++|.+|... .++++|+.+|+++.+.
T Consensus 93 ~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 93 VLYGKR----GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ----GKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHTT----TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHh----ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCC
Confidence 777755 5667777777777643 2356677777777763 3447777777777664
Q ss_pred C--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHcCCC--CcccHHHHHHH
Q 023425 156 L--HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-----------GHAGAAIAYGSLLLRGVQ--VPECLTKLNAK 220 (282)
Q Consensus 156 g--~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----------g~~~a~~~Lg~~y~~g~g--~~~~~~~A~~~ 220 (282)
. .+.++..||.+|.. .+++++|+.+|+++++. .....+..++.++..+.. ....+..+..+
T Consensus 165 ~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLK----QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSW 240 (283)
T ss_dssp CHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC----------
T ss_pred CHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 1 24566777777777 77777777777777653 122344445554443221 11222233333
Q ss_pred HHHHH------HHHchhchh--ccCCCHHHHHHHHHHHHHh
Q 023425 221 RVSAA------KKARANLES--NLMNPVEKAKEQFEVAAQA 253 (282)
Q Consensus 221 ~~~a~------~~a~~~lg~--~~~~~~~~A~~~~~~Aa~~ 253 (282)
++... ..++..+|. ...+++++|+.+|++|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 241 YKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 32221 124455663 3677888888888888754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-13 Score=115.97 Aligned_cols=224 Identities=8% Similarity=-0.064 Sum_probs=167.9
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
-.|++..|+.+..+.....+.......+.....+...+++++|+..++.. +|.+..+...++.++... .+.++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~----~~~~~ 83 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASH----SRRDA 83 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCS----TTHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCC----CcHHH
Confidence 36789999998877544333322212222223333446689999888763 566778888889888865 57799
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN----MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~----~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+..+++.+. ++++.+++.+|.++...+ ++++|+.+|.+ .++++++..+|.+|.. .+++++|+.+
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g----~~~~Al~~l~~---~~~~~~~~~l~~~~~~----~g~~~~A~~~ 152 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQ----NPDAALRTLHQ---GDSLECMAMTVQILLK----LDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT----CHHHHHHHHTT---CCSHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC----CHHHHHHHHhC---CCCHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 9999999874 678999999999999944 45999999999 6899999999999999 9999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--
Q 023425 185 FHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG-- 254 (282)
Q Consensus 185 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g-- 254 (282)
|+++.+........+++..+..-....+++++|+..|+++++ ..++++|. ...+++++|...|++|.+..
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999988754434444443222100014789999999999998 46777884 48899999999999999976
Q ss_pred cHHHHHHHHHHHHHHh
Q 023425 255 CNLGLRWLQRIEEEEK 270 (282)
Q Consensus 255 ~~~a~~~l~~l~~~~~ 270 (282)
++.+..+++.+.....
T Consensus 233 ~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 233 HPETLINLVVLSQHLG 248 (291)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 7778888876665543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-13 Score=114.49 Aligned_cols=185 Identities=11% Similarity=-0.066 Sum_probs=134.4
Q ss_pred ccchHHHHHHHHHHhhhh-------hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSAL-------KEVDRVIDYCELNDRRLIPLLKTAKENFELALEA--------DNSNTHARYWLSK 94 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~g~~~a~~~Lg~ 94 (282)
.+++++|++++.+++... ...........+..+...+++++|+.+|+++++. +|..+.+++++|.
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 135 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 789999999999988754 1334456667777777889999999999999987 4677889999999
Q ss_pred HHhcCCCCCcCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---------
Q 023425 95 LHLKYHVPGACKAMGAALLVDAANM----------GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--------- 155 (282)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--------- 155 (282)
+|... .++++|+.+|+++++. ....++.+||.+|.. ..++++|+.+|+++.+.
T Consensus 136 ~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~ 207 (283)
T 3edt_B 136 LCQNQ----GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETLYKEILTRAHEKEFGSV 207 (283)
T ss_dssp HHHTT----TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99976 6789999999999864 135689999999999 55569999999999874
Q ss_pred --CCHHHHHHHHHHHhcCC--CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 156 --LHPGALYLLGTVYLTGD--CVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 156 --g~~~A~~~Lg~~y~~g~--g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.....+..++..+..+. .....+.++..+++..... ..+.++..||.+|.. .+++++|..+|+++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRR----QGKLEAAHTLEDCASR 280 (283)
T ss_dssp CSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 23445666666665532 2233455555555544322 246689999999998 8899999999988864
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-13 Score=114.95 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=129.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhcCC
Q 023425 65 IPLLKTAKENFELALEADNSN---THARYWLSKLHLKYHVPGACKAMGAALLVDAANM-----GDPDAQYELGCRLRVEN 136 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~---~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~-----g~~~A~~~Lg~~y~~g~ 136 (282)
.+++++|+..|+++++..|++ +.+++.+|.+|... .++++|+.+|+++++. ..+.+++.+|.++....
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~ 103 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQN----KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLS 103 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhc
Confidence 345999999999999999999 99999999999876 6789999999999864 23789999999987611
Q ss_pred C----CcCCHHHHHHHHHHHHHc--CCHHHH-----------------HHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-
Q 023425 137 D----YVQSDQQAFYYIEKAVDQ--LHPGAL-----------------YLLGTVYLTGDCVKKDIASALWCFHRASEKG- 192 (282)
Q Consensus 137 ~----~~~d~~~A~~~~~kAa~~--g~~~A~-----------------~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g- 192 (282)
. ...++++|+.+|+++++. +++.+. +.+|.+|.. .+++++|+.+|+++++..
T Consensus 104 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 104 PPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER----RELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCT
T ss_pred ccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCC
Confidence 1 123459999999999986 344344 888999998 899999999999998752
Q ss_pred ----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhc--c---HHHHHHHH
Q 023425 193 ----HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAG--C---NLGLRWLQ 263 (282)
Q Consensus 193 ----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g--~---~~a~~~l~ 263 (282)
.+.+++.+|.+|.. .++.. +.....+++++|+.+|+++++.. + ..+...+.
T Consensus 180 ~~~~~~~a~~~l~~~~~~----~g~~~----------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 180 DTPWADDALVGAMRAYIA----YAEQS----------------VRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp TSTTHHHHHHHHHHHHHH----HHHTS----------------CGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHH----hcccc----------------hhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 36789999998875 10000 00001134466777777777654 2 34555666
Q ss_pred HHHHHHhhc
Q 023425 264 RIEEEEKRL 272 (282)
Q Consensus 264 ~l~~~~~~~ 272 (282)
.+.......
T Consensus 240 ~~~~~~~~~ 248 (261)
T 3qky_A 240 RARQRLTEL 248 (261)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-13 Score=115.07 Aligned_cols=145 Identities=14% Similarity=0.012 Sum_probs=124.2
Q ss_pred hhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----------CCHHHHHH
Q 023425 66 PLLKTAKENFELALEA--------DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM----------GDPDAQYE 127 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~--------~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~ 127 (282)
+++++|+.+|+++++. .+..+.+++.+|.+|... .++++|+.+|+++++. ..+.++++
T Consensus 41 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 116 (311)
T 3nf1_A 41 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ----NKYKDAANLLNDALAIREKTLGKDHPAVAATLNN 116 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 4599999999999983 677788999999999976 5789999999999853 24678999
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc------
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ----------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK------ 191 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------ 191 (282)
+|.+|.. ..++++|+.+|+++.+. ....++..+|.+|.. .+++++|+.+|+++++.
T Consensus 117 l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 117 LAVLYGK----RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN----QGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHT----TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHH----cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhC
Confidence 9999998 44559999999999875 236778999999999 89999999999999875
Q ss_pred C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 192 G----HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 192 g----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+ .+.+++.+|.+|.. .+++++|..+|+++..
T Consensus 189 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLK----QGKFKQAETLYKEILT 223 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 2 25679999999998 8999999999999987
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-13 Score=109.22 Aligned_cols=163 Identities=10% Similarity=-0.021 Sum_probs=124.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHH----------------hhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYC----------------ELNDRRLIPLLKTAKENFELALEADNSNTHARYWLS 93 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg 93 (282)
.+++++|++.|.+++...+.. ....+. .+..+...+++++|+.+|+++++.+|+++.++++||
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 95 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALNIDR-TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA 95 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCHHH-HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCC-hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 467999999999998754433 333344 555566678899999999999999999999999999
Q ss_pred HHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhc
Q 023425 94 KLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH-PGALYLLGTVYLT 170 (282)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~-~~A~~~Lg~~y~~ 170 (282)
.++... .++++|+.+|++++ ++++++++++||.+|...+ ..+...+...|.++..... ..+++.+|.++..
T Consensus 96 ~~~~~~----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~ 169 (208)
T 3urz_A 96 EMQVCR----GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA--EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF 169 (208)
T ss_dssp HHHHHH----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 999966 57899999999997 5789999999999986421 1223667778887765432 2477889999988
Q ss_pred CCCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 023425 171 GDCVKKDIASALWCFHRASEKG-HAGAAIAYGSL 203 (282)
Q Consensus 171 g~g~~~d~~~A~~~~~~A~~~g-~~~a~~~Lg~~ 203 (282)
.+++++|+.+|++|++.. +..+...|..+
T Consensus 170 ----~~~~~~A~~~~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 170 ----TTRYEKARNSLQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp ----HHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred ----ccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 899999999999999864 34454445443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-12 Score=109.18 Aligned_cols=135 Identities=13% Similarity=0.019 Sum_probs=109.4
Q ss_pred HcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 80 EADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGD---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 80 ~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
+.+|.++.+++.+|..+... +++++|+..|+++++ +++ +++++.+|.+|.. ..++++|+.+|+++++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQ----GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ----NKEYLLAASEYERFIQ 80 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH----hCcHHHHHHHHHHHHH
Confidence 36789999999999999976 678999999999986 456 8999999999999 5556999999999998
Q ss_pred c-----CCHHHHHHHHHHHhcCC----CCccCHHHHHHHHHHHHHcC--CHHHH-----------------HHHHHHHHc
Q 023425 155 Q-----LHPGALYLLGTVYLTGD----CVKKDIASALWCFHRASEKG--HAGAA-----------------IAYGSLLLR 206 (282)
Q Consensus 155 ~-----g~~~A~~~Lg~~y~~g~----g~~~d~~~A~~~~~~A~~~g--~~~a~-----------------~~Lg~~y~~ 206 (282)
. ..+.+++.+|.+|.... ...+++++|+.+|+++++.. ++.+. +.+|.+|..
T Consensus 81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 33789999999987511 11588999999999998853 33333 788888887
Q ss_pred CCCCcccHHHHHHHHHHHHH
Q 023425 207 GVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 207 g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+++++|+.+|++++.
T Consensus 161 ----~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 161 ----RELYEAAAVTYEAVFD 176 (261)
T ss_dssp ----TTCHHHHHHHHHHHHH
T ss_pred ----ccCHHHHHHHHHHHHH
Confidence 7888888888887765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-12 Score=115.77 Aligned_cols=199 Identities=10% Similarity=-0.017 Sum_probs=150.5
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----C----
Q 023425 55 DYCELNDRRLIPLLKTAKENFELALEA------DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM----G---- 120 (282)
Q Consensus 55 ~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g---- 120 (282)
++..|......+++++|+.+|++|++. .+..+.++++||.+|... .++++|+.++++|.+. +
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~----~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM----KQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHHHHhCCCchh
Confidence 344455555568899999999999864 223567999999999976 5789999999999752 2
Q ss_pred -CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH-
Q 023425 121 -DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASE- 190 (282)
Q Consensus 121 -~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~- 190 (282)
.+.++.+||.+|.. ..++++|+.+|++|.+. ++ +.++++||.+|.. .+++++|+.+|++|++
T Consensus 180 ~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 180 RTIQSLFVIAGNYDD----FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 25688999999999 45559999999999874 33 5688999999999 9999999999999987
Q ss_pred ----c--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH-----------chhchhc--cCCC---HHHHHHHHH
Q 023425 191 ----K--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA-----------RANLESN--LMNP---VEKAKEQFE 248 (282)
Q Consensus 191 ----~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a-----------~~~lg~~--~~~~---~~~A~~~~~ 248 (282)
. ..+.++++||.+|.. .+++++|..+++++.... ...++.. ..++ +.+|+.+++
T Consensus 252 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 252 SREKVPDLLPKVLFGLSWTLCK----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHhhCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3 237889999999998 899999999999998832 1233322 4445 888888888
Q ss_pred HHHHhc-cHHHHHHHHHHHHHH
Q 023425 249 VAAQAG-CNLGLRWLQRIEEEE 269 (282)
Q Consensus 249 ~Aa~~g-~~~a~~~l~~l~~~~ 269 (282)
+..... .......++.+....
T Consensus 328 ~~~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 328 KKNLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT
T ss_pred hCCChhHHHHHHHHHHHHHHHC
Confidence 732211 223444455555543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-14 Score=134.87 Aligned_cols=180 Identities=9% Similarity=0.044 Sum_probs=140.8
Q ss_pred cccchHHHHHHHHHHh--------hhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCC
Q 023425 29 LHSRNKKAMELIAKGW--------SALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYH 100 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~ 100 (282)
..+++++|++.+.+++ ... .......+..+..+...+++++|+..|+++++.+|+++.+++++|.++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~- 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT- 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc-
Confidence 4678999999999987 322 222233344444444557799999999999999999999999999999865
Q ss_pred CCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCcc
Q 023425 101 VPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKK 176 (282)
Q Consensus 101 ~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~ 176 (282)
.++++|+..|++|+ +++++.++++||.+|...+.. ++ +.+|++|++. +++.++++||.+|.. .+
T Consensus 481 ---g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~----~~-~~~~~~al~~~P~~~~a~~~lg~~~~~----~g 548 (681)
T 2pzi_A 481 ---GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT----DE-HKFYQTVWSTNDGVISAAFGLARARSA----EG 548 (681)
T ss_dssp ---TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC----CT-TCHHHHHHHHCTTCHHHHHHHHHHHHH----TT
T ss_pred ---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh----HH-HHHHHHHHHhCCchHHHHHHHHHHHHH----cC
Confidence 57899999999997 467999999999999985555 78 9999999886 689999999999999 89
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC----CcccHHHHHHHHH
Q 023425 177 DIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQ----VPECLTKLNAKRV 222 (282)
Q Consensus 177 d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g----~~~~~~~A~~~~~ 222 (282)
++++|+.+|++|++. .++.+++++|.++..+.. ...++.+|...+.
T Consensus 549 ~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 549 DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp CHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh
Confidence 999999999999765 568899999999877532 1344555555443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-13 Score=101.60 Aligned_cols=115 Identities=8% Similarity=-0.058 Sum_probs=92.5
Q ss_pred HHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 78 ALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 78 a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.+.++|..++++.++|..|... +++++|+.+|++|++ +.++.+++++|.+|.. ..++++|+.+|+++++.
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKK----GDYPTAMRHYNEAVKRDPENAILYSNRAACLTK----LMEFQRALDDCDTCIRL 76 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh----hccHHHHHHHHHHHHHh
Confidence 3446788888888888888865 577889999988874 5788888889988888 44558899999988876
Q ss_pred --CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 156 --LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLL 204 (282)
Q Consensus 156 --g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y 204 (282)
.++.+++++|.+|.. .+++++|+.+|+++++. +++.+..+|+.|+
T Consensus 77 ~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 DSKFIKGYIRKAACLVA----MREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 678888999998888 88899999999988764 5788888888764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=131.84 Aligned_cols=156 Identities=9% Similarity=-0.090 Sum_probs=139.2
Q ss_pred CchhhHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHH
Q 023425 63 RLIPLLKTAKENFELAL--------EADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRL 132 (282)
Q Consensus 63 ~~~~~~~~A~~~~~~a~--------~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y 132 (282)
...+++++|+..|++++ +.+|+++.+++.+|.++... .++++|+..|++++ +++++.+++++|.+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDL----GDVAKATRKLDDLAERVGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhc----CCHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 34577999999999999 88999999999999999865 57899999999998 578999999999999
Q ss_pred hcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC
Q 023425 133 RVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGV 208 (282)
Q Consensus 133 ~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~ 208 (282)
.. ..++++|+..|++|++. +++.++++||.+|.. .+++++ +.+|++|++. .++.+++++|.+|..
T Consensus 478 ~~----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~-- 546 (681)
T 2pzi_A 478 LL----TGDYDSATKHFTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA-- 546 (681)
T ss_dssp HH----HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred HH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH--
Confidence 98 45559999999999987 789999999999999 899999 9999999875 679999999999998
Q ss_pred CCcccHHHHHHHHHHHHH------HHchhchhc
Q 023425 209 QVPECLTKLNAKRVSAAK------KARANLESN 235 (282)
Q Consensus 209 g~~~~~~~A~~~~~~a~~------~a~~~lg~~ 235 (282)
.+++++|+.+|+++.+ .+++++|..
T Consensus 547 --~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 547 --EGDRVGAVRTLDEVPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp --TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence 8999999999999975 577777744
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-13 Score=104.18 Aligned_cols=132 Identities=8% Similarity=-0.003 Sum_probs=108.2
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.++.++|++.+.+++...+ ......+..+..+...+++++|+.+|+++++.+|+++.+++.||.+|... .++++|
T Consensus 10 ~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----~~~~~A 84 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE----ENTDKA 84 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHH
T ss_pred cChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CchHHH
Confidence 4678999999999887444 33444555555556668899999999999999999999999999999976 578999
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHH-HHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFY-YIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~-~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
+.+|+++++ +++++++++||.+|...+.. ++|.. |+++|++. +++.++..++.++..
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVT----DGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS----SSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 999999985 67999999999999875444 55554 56899886 799999988988765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=8.9e-12 Score=108.29 Aligned_cols=207 Identities=11% Similarity=-0.057 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhcCC----------C----chhhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHhc
Q 023425 34 KKAMELIAKGWSALKEVDRVIDYCELNDR----------R----LIPLLKTAKENFELALE-ADNSNTHARYWLSKLHLK 98 (282)
Q Consensus 34 ~~A~e~~~~~~~~~~~~~~~~~~~~~~~~----------~----~~~~~~~A~~~~~~a~~-~~~g~~~a~~~Lg~~~~~ 98 (282)
++|+..|.+++...+... ...+..+... + ..+.+++|+..|++|++ .+|+++.++..+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~-~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHP-DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 788888988887554322 2222222111 1 11235899999999999 699999999999999986
Q ss_pred CCCCCcCHHHHHHHHHHHHh--CCCHH-HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC
Q 023425 99 YHVPGACKAMGAALLVDAAN--MGDPD-AQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDC 173 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~--~g~~~-A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g 173 (282)
. .+.++|...|+++++ +.+++ ++.++|.++... .++++|+..|++|++. .+...+...+.+...
T Consensus 112 ~----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~--- 180 (308)
T 2ond_A 112 R----MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA----EGIKSGRMIFKKAREDARTRHHVYVTAALMEYY--- 180 (308)
T ss_dssp T----TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH----HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH---
T ss_pred c----CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---
Confidence 5 477999999999996 45666 899999998874 4459999999999987 345555555555322
Q ss_pred CccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH----------Hchhchh--ccCCC
Q 023425 174 VKKDIASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK----------ARANLES--NLMNP 239 (282)
Q Consensus 174 ~~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------a~~~lg~--~~~~~ 239 (282)
..+++++|+.+|+++++ ..++.++..++.++.. .+++++|...|++++.. .+..++. ...++
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 15889999999999977 4679999999999987 78999999999999883 1222332 25678
Q ss_pred HHHHHHHHHHHHHhccH
Q 023425 240 VEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 240 ~~~A~~~~~~Aa~~g~~ 256 (282)
.+.|...++++.+....
T Consensus 257 ~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 257 LASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHccc
Confidence 99999999999987653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=122.46 Aligned_cols=145 Identities=19% Similarity=0.144 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|+++.+++.+|.++... .++++|+.+|+++++ +.++.++++||.+|... .+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~ 74 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGM----GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ----QRHA 74 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT----TCHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHH
Confidence 3566777777777777777777777777776644 456777777777764 35667777777777663 3347
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCc---ccHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVP---ECLTK 216 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~---~~~~~ 216 (282)
+|+.+|+++++. +++.++++||.+|.. .+++++|+.+|+++++. +++.+++++|.++.. . +++++
T Consensus 75 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~g~~~~ 146 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR----LCDWRALDV 146 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCTTHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhccccHHH
Confidence 777777777665 566677777777766 66777777777776654 456667777777765 4 66667
Q ss_pred HHHHHHHHHH
Q 023425 217 LNAKRVSAAK 226 (282)
Q Consensus 217 A~~~~~~a~~ 226 (282)
|..+|+++.+
T Consensus 147 A~~~~~~al~ 156 (568)
T 2vsy_A 147 LSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777776665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-12 Score=110.82 Aligned_cols=189 Identities=13% Similarity=0.040 Sum_probs=142.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Q 023425 35 KAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLV 114 (282)
Q Consensus 35 ~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~ 114 (282)
+|.+++.++-..++...+.+.+. . ...+.++++|+.+|+++. .+|... .++++|+.+|.
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~~~~--~-~~~~~~~~~A~~~~~~a~--------------~~~~~~----g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFMKLF--S-GSDSYKFEEAADLCVQAA--------------TIYRLR----KELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHHHHH--S-CCSHHHHHHHHHHHHHHH--------------HHHHHT----TCTHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcchhc--C-CCCCccHHHHHHHHHHHH--------------HHHHHc----CCHHHHHHHHH
Confidence 56777777766665432222111 1 001345999999999993 344433 46799999999
Q ss_pred HHHhC----CC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCc-cC
Q 023425 115 DAANM----GD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVK-KD 177 (282)
Q Consensus 115 ~Aa~~----g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~-~d 177 (282)
+|++. |+ +.++.++|.+|...+ ++++|+.+|++|++. |+ +.++.+||.+|.. . ++
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g----~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~ 133 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGG----NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHD 133 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcC
Confidence 99863 44 568999999999844 559999999999875 44 4688999999998 7 99
Q ss_pred HHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH-------------Hchhchh--
Q 023425 178 IASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-------------ARANLES-- 234 (282)
Q Consensus 178 ~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------a~~~lg~-- 234 (282)
+++|+.+|++|++. ++ ..++.++|.+|.. .+++++|+.+|+++... .+.++|.
T Consensus 134 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 209 (292)
T 1qqe_A 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence 99999999999874 22 4678999999998 89999999999999872 2456674
Q ss_pred ccCCCHHHHHHHHHHHHHhccH
Q 023425 235 NLMNPVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 235 ~~~~~~~~A~~~~~~Aa~~g~~ 256 (282)
...+++++|+.+|+++.+..+.
T Consensus 210 ~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHTTCHHHHHHHHHGGGCC---
T ss_pred HHcCCHHHHHHHHHHHHhhCCC
Confidence 3688999999999999876543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-13 Score=106.26 Aligned_cols=114 Identities=11% Similarity=0.015 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHH
Q 023425 69 KTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAF 146 (282)
Q Consensus 69 ~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~ 146 (282)
-.+-..|+++++.+|+++.+++.+|.++... .++++|+.+|++++ ++.++.++++||.+|... .++++|+
T Consensus 19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~----g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~----g~~~~Ai 90 (151)
T 3gyz_A 19 INSGATLKDINAIPDDMMDDIYSYAYDFYNK----GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK----EQFQQAA 90 (151)
T ss_dssp HHTSCCTGGGCCSCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHH
T ss_pred HHCCCCHHHHhCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----ccHHHHH
Confidence 3344567788889999999999999999866 57799999999997 568999999999999984 4459999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCH
Q 023425 147 YYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHA 194 (282)
Q Consensus 147 ~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~ 194 (282)
.+|++|+.. +++.+++++|.+|.. .+++++|+.+|++|++....
T Consensus 91 ~~~~~al~l~P~~~~~~~~lg~~~~~----lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 91 DLYAVAFALGKNDYTPVFHTGQCQLR----LKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Confidence 999999887 789999999999999 99999999999999887543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-12 Score=99.07 Aligned_cols=150 Identities=16% Similarity=0.074 Sum_probs=125.9
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|++++.+++...+. .....+..+......+++++|+.+|+++++..|.++.+++.+|.++... .++++
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~ 94 (186)
T 3as5_A 20 KAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV----QKYDL 94 (186)
T ss_dssp HHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHH
T ss_pred HhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----cCHHH
Confidence 356799999999988764332 2333444444445567899999999999999999999999999999865 57799
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
|+.+|+++.+ +.++.+++.+|.++.. ..++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~ 166 (186)
T 3as5_A 95 AVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ----MGRHEEALPH 166 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCHHHHHHH
Confidence 9999999985 5789999999999998 45559999999999987 578999999999999 8999999999
Q ss_pred HHHHHHc
Q 023425 185 FHRASEK 191 (282)
Q Consensus 185 ~~~A~~~ 191 (282)
|+++++.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9999764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-12 Score=97.12 Aligned_cols=96 Identities=11% Similarity=-0.121 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++++|.+|... .++++|+..|++|++ +.++.+++++|.+|.. ..++
T Consensus 26 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~~~ 97 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL----MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA----MREW 97 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh----ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----CCCH
Confidence 35599999999999999999999999999999976 578999999999985 6799999999999999 4555
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVY 168 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y 168 (282)
++|+.+|+++++. +++++...|+.++
T Consensus 98 ~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 98 SKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999987 7999999999875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.3e-12 Score=109.23 Aligned_cols=179 Identities=8% Similarity=-0.015 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhcCCCCCcCHHHHHH
Q 023425 33 NKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTH-ARYWLSKLHLKYHVPGACKAMGAA 111 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~-a~~~Lg~~~~~~~~~~~~~~~A~~ 111 (282)
.++|++.|.+++..+.+.........+......+++++|...|+++++.+|.++. ++..+|.++... ++.++|..
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~A~~ 155 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA----EGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH----HCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh----cCHHHHHH
Confidence 3899999999998544333344444444444557899999999999999999997 999999998765 56799999
Q ss_pred HHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 112 LLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 112 ~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
.|++|++. .+...+...+.+.... ..++++|+..|+++++. .++.++..+|.++.. .+++++|+.+|++
T Consensus 156 ~~~~a~~~~p~~~~~~~~~a~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~ 228 (308)
T 2ond_A 156 IFKKAREDARTRHHVYVTAALMEYYC---SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHTSTTCCTHHHHHHHHHHHHT---SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 99999964 4566666555553321 34569999999999886 789999999999988 8999999999999
Q ss_pred HHHc------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 188 ASEK------GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 188 A~~~------g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
|+.. .....+..++.++.. .++.+.|...++++.+
T Consensus 229 al~~~~l~p~~~~~l~~~~~~~~~~----~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFLAFESN----IGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 9995 245678888888887 7889999999999876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-11 Score=106.82 Aligned_cols=187 Identities=13% Similarity=0.009 Sum_probs=139.6
Q ss_pred hhhhhhhhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCC
Q 023425 4 QISKASTLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADN 83 (282)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 83 (282)
.+..|..++..+...+.+. ... ..+++++|++.|.++.. .+.. .+++++|+.+|+++++..+
T Consensus 6 ~~~eA~~~~~~a~k~~~~~--~~~-~~~~~~~A~~~~~~a~~--------~~~~-------~g~~~~A~~~~~~al~~~~ 67 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTS--FMK-WKPDYDSAASEYAKAAV--------AFKN-------AKQLEQAKDAYLQEAEAHA 67 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCC--SSS-CSCCHHHHHHHHHHHHH--------HHHH-------TTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccc--ccC-CCCCHHHHHHHHHHHHH--------HHHH-------cCCHHHHHHHHHHHHHHHH
Confidence 4455666666666554431 111 25789999998887632 2222 2459999999999988643
Q ss_pred C------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHH
Q 023425 84 S------NTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN----MGD----PDAQYELGCRLRVENDYVQSDQQAFYYI 149 (282)
Q Consensus 84 g------~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~ 149 (282)
. -+.++.++|.+|... .++++|+.+|++|++ .|+ ..++.++|.+|.. +. +++|+.+|
T Consensus 68 ~~~~~~~~a~~~~~lg~~~~~~----g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~----~~~A~~~~ 138 (307)
T 2ifu_A 68 NNRSLFHAAKAFEQAGMMLKDL----QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD----LSKAVHLY 138 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT----TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC----HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC----HHHHHHHH
Confidence 2 245888999999865 466999999999975 344 4678899999976 44 49999999
Q ss_pred HHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCccc
Q 023425 150 EKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPEC 213 (282)
Q Consensus 150 ~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~ 213 (282)
++|++. ++ ..++.++|.+|.. .+++++|+.+|+++++. +. ..++.++|.++.. .++
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~----~g~ 210 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH----RAD 210 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----cCC
Confidence 999875 32 5788999999998 89999999999999773 32 4478888999987 788
Q ss_pred HHHHHHHHHHHH
Q 023425 214 LTKLNAKRVSAA 225 (282)
Q Consensus 214 ~~~A~~~~~~a~ 225 (282)
+++|..+|+++.
T Consensus 211 ~~~A~~~~~~al 222 (307)
T 2ifu_A 211 YVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.7e-12 Score=108.80 Aligned_cols=183 Identities=17% Similarity=0.058 Sum_probs=143.1
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++++.++.+..... ..+..+++++|..+|.++. .+|... .++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a~--------------~~~~~~----g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKAA--------------VAFKNA----KQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHHH--------------HHHHHT----TCHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHHH--------------HHHHHc----CCHHHH
Confidence 356889999999887644421 1222478999999999883 344433 578999
Q ss_pred HHHHHHHHhC----CC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCC
Q 023425 110 AALLVDAANM----GD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDC 173 (282)
Q Consensus 110 ~~~~~~Aa~~----g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g 173 (282)
+.+|.+|++. ++ ..++.++|.+|...+.. ++|+.+|++|++. |+ ..++.+||.+|..
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--- 128 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM----PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--- 128 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG----GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc---
Confidence 9999999853 44 45889999999985544 9999999999875 44 4678899999964
Q ss_pred CccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------------Hchhch
Q 023425 174 VKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------------ARANLE 233 (282)
Q Consensus 174 ~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------a~~~lg 233 (282)
+++++|+.+|++|++. ++ ..++.++|.+|.. .+++++|+.+|++++.. .+.++|
T Consensus 129 --g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 129 --LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 7899999999999874 32 5689999999998 89999999999999872 344555
Q ss_pred hc--cCCCHHHHHHHHHHHHHhc
Q 023425 234 SN--LMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 234 ~~--~~~~~~~A~~~~~~Aa~~g 254 (282)
.. ..+++++|+.+|+++. ..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TS
T ss_pred HHHHHcCCHHHHHHHHHHHh-CC
Confidence 44 5589999999999998 54
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=104.02 Aligned_cols=146 Identities=9% Similarity=-0.082 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcC-CCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG-DPDAQYELGCRLRVE-NDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~g-~~~~~d~~ 143 (282)
+++++|+..|+++++.+|+++.+++.+|.++... .++++|+..|+++++.. ++.....++.+...+ ... .
T Consensus 20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~----g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~----~ 91 (176)
T 2r5s_A 20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLLET----KQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAE----S 91 (176)
T ss_dssp TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT----TCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTS----C
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC----CCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhccc----c
Confidence 4599999999999999999999999999999966 57799999999997533 676666666553321 111 3
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG----HAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g----~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
.|+..|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++.. ++.++.+||.++.. .++.++|
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~A 163 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQ----VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA----LGQGNAI 163 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH----HCSSCHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH----hCCCCcH
Confidence 589999999987 689999999999999 999999999999999875 26699999999997 6777778
Q ss_pred HHHHHHHHHH
Q 023425 218 NAKRVSAAKK 227 (282)
Q Consensus 218 ~~~~~~a~~~ 227 (282)
+.+|+++...
T Consensus 164 ~~~y~~al~~ 173 (176)
T 2r5s_A 164 ASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.1e-12 Score=117.98 Aligned_cols=159 Identities=13% Similarity=-0.005 Sum_probs=118.4
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.+.+++.... ......+..+..+...+++++|+.+|+++++.+|+++.++++||.+|... .++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ----QRHAEA 76 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 4678889999988876433 23344455555555567899999999999999999999999999999976 578999
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc---cCHHHHH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVK---KDIASAL 182 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~---~d~~~A~ 182 (282)
+.+|+++++ ++++.++++||.+|.. ..++++|+.+|+++.+. +++.++.++|.+|.. . +++++|+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~g~~~~A~ 148 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR----LCDWRALDVLS 148 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCTTHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhccccHHHHH
Confidence 999999985 5789999999999999 44559999999999987 689999999999998 7 9999999
Q ss_pred HHHHHHHHcC--CHHHHHHHH
Q 023425 183 WCFHRASEKG--HAGAAIAYG 201 (282)
Q Consensus 183 ~~~~~A~~~g--~~~a~~~Lg 201 (282)
.+|+++++.+ +..++..|+
T Consensus 149 ~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 149 AQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHhcCCcccChHHHhC
Confidence 9999998864 455566565
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.7e-12 Score=108.75 Aligned_cols=156 Identities=9% Similarity=-0.064 Sum_probs=124.0
Q ss_pred HHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHh
Q 023425 56 YCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLR 133 (282)
Q Consensus 56 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~ 133 (282)
+..+......+++++|+..|+++++.+|+++.+++.||.++... ++.++|+.+|+++.. +........++..+.
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~----g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIAL----NRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT----TCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHC----CCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 33333344456799999999999999999999999999999876 577999999999864 444555555666565
Q ss_pred cCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CC--HHHHHHHHHHHHcC
Q 023425 134 VENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GH--AGAAIAYGSLLLRG 207 (282)
Q Consensus 134 ~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~--~~a~~~Lg~~y~~g 207 (282)
..+.. ..|+..|++++.. +++.++++||.+|.. .+++++|+..|++++.. ++ +.+..+||.+|..
T Consensus 197 ~~~~~----~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~- 267 (287)
T 3qou_A 197 XQAAD----TPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA- 267 (287)
T ss_dssp HHHTS----CHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH-
T ss_pred hhccc----CccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH-
Confidence 54444 6789999999876 789999999999999 89999999999999885 34 7899999999987
Q ss_pred CCCcccHHHHHHHHHHHHHH
Q 023425 208 VQVPECLTKLNAKRVSAAKK 227 (282)
Q Consensus 208 ~g~~~~~~~A~~~~~~a~~~ 227 (282)
.++.+.|..+|+++...
T Consensus 268 ---~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 268 ---LGTGDALASXYRRQLYA 284 (287)
T ss_dssp ---HCTTCHHHHHHHHHHHH
T ss_pred ---cCCCCcHHHHHHHHHHH
Confidence 66777777777777553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-11 Score=100.79 Aligned_cols=149 Identities=12% Similarity=-0.046 Sum_probs=113.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCH---HHHHHHHHHHhcCC
Q 023425 65 IPLLKTAKENFELALEADNSNT---HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDP---DAQYELGCRLRVEN 136 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~---~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~---~A~~~Lg~~y~~g~ 136 (282)
.+++++|+..|+++++..|.++ .+++.+|.+|... +++++|+..|+++++ ++++ .|++.+|.++...+
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~----~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN----ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence 3569999999999998888764 7899999999976 678999999999985 4444 48999998886411
Q ss_pred --------------CCcCCHHHHHHHHHHHHHc--CCHHHH-----------------HHHHHHHhcCCCCccCHHHHHH
Q 023425 137 --------------DYVQSDQQAFYYIEKAVDQ--LHPGAL-----------------YLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 137 --------------~~~~d~~~A~~~~~kAa~~--g~~~A~-----------------~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
.-..++++|+..|+++++. +++.+. +.+|.+|.. .+++++|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~ 168 (225)
T 2yhc_A 93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE----RGAWVAVVN 168 (225)
T ss_dssp C--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCcHHHHHH
Confidence 0134578999999999886 343332 567888888 888999999
Q ss_pred HHHHHHHcC--C---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 184 CFHRASEKG--H---AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 184 ~~~~A~~~g--~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
.|+++++.. + +.+++.+|.+|.. .+++++|+.+++++.
T Consensus 169 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~----~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 169 RVEGMLRDYPDTQATRDALPLMENAYRQ----MQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCCCccHHHHHHHHHHHHH----cCCcHHHHHHHHHHH
Confidence 999988753 3 3678889999888 677776666665543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-12 Score=98.18 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHH
Q 023425 70 TAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFY 147 (282)
Q Consensus 70 ~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~ 147 (282)
.+...|+++++.+|+++.+++.+|.++... .++++|+..|++++ ++.++.+++++|.++.. ..++++|+.
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~ 76 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQS----GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA----MGQYDLAIH 76 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHc----CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH----HhhHHHHHH
Confidence 334568889989999999999999999866 57899999999997 46799999999999998 445599999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 148 YIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 148 ~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+|++++.. +++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 77 ~~~~al~l~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 77 SYSYGAVMDIXEPRFPFHAAECLLQ----XGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 99999886 689999999999999 89999999999999775
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-10 Score=100.43 Aligned_cols=145 Identities=12% Similarity=0.008 Sum_probs=103.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTH------ARYWLSKLHLKYHVPGACKAMGAALLVDAANM----GD----PDAQYELGC 130 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~------a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~ 130 (282)
.+++++|+..|+++++..+..+. .++.+|.++... .++++|+.+|++|.+. .+ ..+++++|.
T Consensus 88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 2qfc_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK----VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS----SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45688888888888876665543 355677776644 4778888888888752 11 458888888
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHc-----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--------C
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQ-----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--------H 193 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~-----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--------~ 193 (282)
+|.. ..++++|+.+|++|.+. ++ +.+++++|.+|.. .+++++|+.+|++|++.. .
T Consensus 164 ~y~~----~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 164 IYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHH----cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 8888 44558888888888732 22 2588888888888 888888888888886531 1
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHH-HHHHHHHH
Q 023425 194 AGAAIAYGSLLLRGVQVPECLTKL-NAKRVSAA 225 (282)
Q Consensus 194 ~~a~~~Lg~~y~~g~g~~~~~~~A-~~~~~~a~ 225 (282)
+.+++++|.+|.. .+++++| ..+|++|.
T Consensus 236 ~~~~~~lg~~y~~----~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRK----LEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHH----TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCcHHHHHHHHHHHH
Confidence 6678888888887 6666666 55555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-10 Score=97.98 Aligned_cols=146 Identities=12% Similarity=0.027 Sum_probs=116.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHA------RYWLSKLHLKYHVPGACKAMGAALLVDAANM----GD----PDAQYELGC 130 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a------~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~ 130 (282)
.+++++|+..|+++++..+.++.- ++.+|.++... .++++|+.+|++|.+. ++ ..++.+||.
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK----VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTS----SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcc----cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 467999999999999877667662 22477777643 5789999999999873 22 447999999
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----C----C
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQ---------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----G----H 193 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~---------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g----~ 193 (282)
+|.. ..++++|+.+|++|.+. ..+.+++++|.+|.. .+++++|+.++++|++. + .
T Consensus 164 ~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 164 IYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 9998 44559999999999852 235688999999999 99999999999999763 2 2
Q ss_pred HHHHHHHHHHHHcCCCCcc-cHHHHHHHHHHHHH
Q 023425 194 AGAAIAYGSLLLRGVQVPE-CLTKLNAKRVSAAK 226 (282)
Q Consensus 194 ~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~ 226 (282)
+.+++++|.+|.. .+ ++++|..+|++|..
T Consensus 236 ~~~~~~lg~~~~~----~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 236 GQLYYQRGECLRK----LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHH----TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCCcHHHHHHHHHHHHH
Confidence 7889999999997 55 46888888888876
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.1e-12 Score=111.16 Aligned_cols=145 Identities=13% Similarity=0.006 Sum_probs=125.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCC---------------HHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGD---------------PDAQYE 127 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~---------------~~A~~~ 127 (282)
..++++|+..|+++++.+|.++.+++.+|.++... .++++|+.+|++|++ +.+ +.++++
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~----g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKE----GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHH
Confidence 46788899999999988899999999999999965 578999999999985 445 689999
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSL 203 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~ 203 (282)
||.+|.. ..++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|++|++. .++.++.+|+.+
T Consensus 202 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 202 LAMCHLK----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999 45559999999999987 689999999999999 99999999999999875 579999999999
Q ss_pred HHcCCCCcccHHHH-HHHHHHHH
Q 023425 204 LLRGVQVPECLTKL-NAKRVSAA 225 (282)
Q Consensus 204 y~~g~g~~~~~~~A-~~~~~~a~ 225 (282)
+.. .+++++| ...|++..
T Consensus 274 ~~~----~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQR----IRRQLAREKKLYANMF 292 (336)
T ss_dssp HHH----HHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHH
Confidence 998 7777776 34555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-10 Score=94.93 Aligned_cols=124 Identities=10% Similarity=0.066 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYL 163 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~ 163 (282)
...++.+|..+... .++++|+..|++++++ ++.+++++|.+|.. ..++++|+.+|++++.. .++.++++
T Consensus 6 ~~~~~~~g~~~~~~----~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 76 (213)
T 1hh8_A 6 AISLWNEGVLAADK----KDWKGALDAFSAVQDP-HSRICFNIGCMYTI----LKNMTEAEKAFTRSINRDKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHTSSSC-CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh----CCHHHHHHHHHHHcCC-ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 34567777777754 5678888888888644 67888888888877 44458888888888775 57788888
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 164 LGTVYLTGDCVKKDIASALWCFHRASEKG------------------HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 164 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
+|.+|.. .+++++|+.+|+++++.. .+.+++++|.+|.. .+++++|..+|+++.
T Consensus 77 lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 77 RGMLYYQ----TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHHHHH----cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----ccCHHHHHHHHHHHH
Confidence 8888887 788888888888887742 23778888888887 677777777777665
Q ss_pred H
Q 023425 226 K 226 (282)
Q Consensus 226 ~ 226 (282)
.
T Consensus 149 ~ 149 (213)
T 1hh8_A 149 S 149 (213)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-10 Score=84.47 Aligned_cols=114 Identities=25% Similarity=0.252 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++.+ +.++.+++.+|.++.. ..+++
T Consensus 15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 86 (136)
T 2fo7_A 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYD 86 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHH
T ss_pred CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh----cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH----hcCHH
Confidence 4588888888888888888888888888887754 467888888888874 4567788888888877 34458
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+|+.+|.++... .++.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 87 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 87 EAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH----HccHHHHHHHHHHHHcc
Confidence 888888888775 467788888888887 78888888888887654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.4e-11 Score=93.19 Aligned_cols=120 Identities=13% Similarity=0.033 Sum_probs=101.9
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHH-HhcCCCC
Q 023425 62 RRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCR-LRVENDY 138 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~-y~~g~~~ 138 (282)
....+++++|+..|+++++.+|.++.+++.+|.+|... .++++|+.+|+++++ +.++.+++.+|.+ +..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~---- 91 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ----NDYSNSLLAYRQALQLRGENAELYAALATVLYYQ---- 91 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH----
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Confidence 34457799999999999999999999999999999966 578999999999974 6799999999999 655
Q ss_pred cCCH--HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 139 VQSD--QQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 139 ~~d~--~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
..++ ++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++...
T Consensus 92 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM----QANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCC
T ss_pred cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCC
Confidence 3333 8999999999986 689999999999999 8999999999999988643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-10 Score=93.96 Aligned_cols=158 Identities=13% Similarity=0.045 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGD---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH 157 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~ 157 (282)
.+.+++.+|..+... +++++|+..|+++++ +.+ +++++.+|.+|.. ..++++|+..|+++++. ++
T Consensus 3 ~~~~~~~~a~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 3 PPNEIYATAQQKLQD----GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp CHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCC
Confidence 578899999998865 688999999999986 333 4799999999999 55569999999999986 33
Q ss_pred H---HHHHHHHHHHhcC--------------CCCccCHHHHHHHHHHHHHcC--CHHH-----------------HHHHH
Q 023425 158 P---GALYLLGTVYLTG--------------DCVKKDIASALWCFHRASEKG--HAGA-----------------AIAYG 201 (282)
Q Consensus 158 ~---~A~~~Lg~~y~~g--------------~g~~~d~~~A~~~~~~A~~~g--~~~a-----------------~~~Lg 201 (282)
+ .|++.+|.+|... ....+++++|+..|+++++.. ++.+ .+.+|
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a 154 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA 154 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 5899999998741 012578999999999998853 3222 26788
Q ss_pred HHHHcCCCCcccHHHHHHHHHHHHH---------HHchhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 202 SLLLRGVQVPECLTKLNAKRVSAAK---------KARANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 202 ~~y~~g~g~~~~~~~A~~~~~~a~~---------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
.+|.. .++++.|+..|+++++ .+++.+|. ...+++++|+.+++++...+
T Consensus 155 ~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 155 EYYTE----RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHH----HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHH----cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 88888 8999999999999986 35667774 47889999999998877655
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-11 Score=92.39 Aligned_cols=107 Identities=12% Similarity=-0.002 Sum_probs=87.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 023425 73 ENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIE 150 (282)
Q Consensus 73 ~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~ 150 (282)
..|+++++.+|+++.+++.+|..+... .++++|+.+|++++ ++.++.+++.||.+|.. ..++++|+.+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~ 76 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQA----GKWDDAQKIFQALCMLDHYDARYFLGLGACRQS----LGLYEQALQSYS 76 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----HhhHHHHHHHHH
Confidence 467778888888889999999998865 57799999999987 45788999999999988 444599999999
Q ss_pred HHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 151 KAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 151 kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+++.. .++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 77 ~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 77 YGALMDINEPRFPFHAAECHLQ----LGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 99886 688899999999998 89999999999998764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-10 Score=88.65 Aligned_cols=93 Identities=15% Similarity=-0.040 Sum_probs=80.2
Q ss_pred HHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHh
Q 023425 56 YCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLR 133 (282)
Q Consensus 56 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~ 133 (282)
+..+......+++++|+.+|+++++.+|.++.++++||.+|... .++++|+..|++|+ +++++.+++++|.+|.
T Consensus 40 ~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~----g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 40 YSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK----EQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 33333334456699999999999999999999999999999976 67899999999997 5789999999999999
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcC
Q 023425 134 VENDYVQSDQQAFYYIEKAVDQL 156 (282)
Q Consensus 134 ~g~~~~~d~~~A~~~~~kAa~~g 156 (282)
..+. +++|+.+|+++++..
T Consensus 116 ~lg~----~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKA----PLKAKECFELVIQHS 134 (151)
T ss_dssp HTTC----HHHHHHHHHHHHHHC
T ss_pred HcCC----HHHHHHHHHHHHHhC
Confidence 9444 599999999999974
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-09 Score=80.51 Aligned_cols=124 Identities=21% Similarity=0.182 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHH
Q 023425 87 HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALY 162 (282)
Q Consensus 87 ~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~ 162 (282)
.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|+++... .++.+++
T Consensus 2 ~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 73 (136)
T 2fo7_A 2 EAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHc----CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHHCCCchHHHH
Confidence 4788899988865 577999999999975 5688999999999988 45569999999999876 5788999
Q ss_pred HHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 163 LLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 163 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+|.++.. .+++++|+.+|+++... .++.+++.+|.+|.. .+++++|..+++++..
T Consensus 74 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 74 NLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----HccHHHHHHHHHHHHc
Confidence 99999998 89999999999999875 468889999999987 6777776666666543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-11 Score=105.22 Aligned_cols=146 Identities=12% Similarity=-0.090 Sum_probs=115.0
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHH
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN---------------THARYWLSKL 95 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~---------------~~a~~~Lg~~ 95 (282)
.++++|++.+.+++. .........+..+..+...+++++|+..|++|++.+|.+ +.++++||.+
T Consensus 127 ~~~~~A~~~~~~a~~-~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSE-EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHH-HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554433 222233344445555555677999999999999999999 6999999999
Q ss_pred HhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC
Q 023425 96 HLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTG 171 (282)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g 171 (282)
|... .++++|+.+|++|++ +.++.+++++|.+|.. ..++++|+.+|+++++. +++.++..||.++..
T Consensus 206 ~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~- 276 (336)
T 1p5q_A 206 HLKL----QAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR- 276 (336)
T ss_dssp HHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-
T ss_pred HHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-
Confidence 9976 578999999999985 6799999999999999 44559999999999987 689999999999998
Q ss_pred CCCccCHHHH-HHHHHHHH
Q 023425 172 DCVKKDIASA-LWCFHRAS 189 (282)
Q Consensus 172 ~g~~~d~~~A-~~~~~~A~ 189 (282)
.+++++| ...|++..
T Consensus 277 ---~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 ---IRRQLAREKKLYANMF 292 (336)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHH
Confidence 8888888 45666554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-10 Score=92.41 Aligned_cols=114 Identities=14% Similarity=0.052 Sum_probs=99.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+..|++++ + .++.+++++|.+|... +++++|+.+|+++++ +.++.+++++|.+|.. ..++
T Consensus 19 ~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~ 87 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTIL----KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ----TEKY 87 (213)
T ss_dssp TTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred hCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----cccH
Confidence 355999999999994 4 3899999999999976 578999999999985 6789999999999999 4455
Q ss_pred HHHHHHHHHHHHc--CC----------------HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 143 QQAFYYIEKAVDQ--LH----------------PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~----------------~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
++|+.+|+++.+. ++ +.+++++|.+|.. .+++++|+.+|+++++...
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCc
Confidence 9999999999985 23 3999999999999 8999999999999988754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-10 Score=89.85 Aligned_cols=146 Identities=16% Similarity=0.066 Sum_probs=112.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----C----CCHHHHHHHHHHHhcCC
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN----M----GDPDAQYELGCRLRVEN 136 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~----g~~~A~~~Lg~~y~~g~ 136 (282)
.+++++|.+.++......+..+.+++.+|.++... .++++|+.+|+++.+ . ..+.++.++|.+|...
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~- 79 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFM----DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA- 79 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-
Confidence 35688888855555543336788999999999865 578999999999976 2 2457899999999984
Q ss_pred CCcCCHHHHHHHHHHHHHc----C-C----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHH
Q 023425 137 DYVQSDQQAFYYIEKAVDQ----L-H----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIA 199 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~----g-~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~ 199 (282)
.++++|+.+|+++.+. + + +.++.++|.+|.. .+++++|+.+++++++. ++ ..++.+
T Consensus 80 ---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 80 ---GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH----FGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4559999999999875 3 3 4578899999999 89999999999999753 43 335688
Q ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 200 YGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 200 Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+|.+|.. .+++++|..+++++.+
T Consensus 153 la~~~~~----~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 153 LGDLAQQ----EKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHH----CcCHHHHHHHHHHHHH
Confidence 9999987 6778777777766644
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-10 Score=97.33 Aligned_cols=150 Identities=10% Similarity=0.007 Sum_probs=114.7
Q ss_pred cccchHHHHHHHHHHhhhhhH-----HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHh
Q 023425 29 LHSRNKKAMELIAKGWSALKE-----VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN------THARYWLSKLHL 97 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~------~~a~~~Lg~~~~ 97 (282)
..+++++|++.+.+.+..... ......+..+......+++++|+.+|+++++..+.. ..+++++|.+|.
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 477899999999887763321 111222333333334468999999999998643333 568999999999
Q ss_pred cCCCCCcCHHHHHHHHHHHHh-----CCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--------CHHH
Q 023425 98 KYHVPGACKAMGAALLVDAAN-----MGD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL--------HPGA 160 (282)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~Aa~-----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g--------~~~A 160 (282)
.. .++++|+.+|++|.+ +++ +.+++++|.+|.. ..++++|+.+|++|.+.. .+.+
T Consensus 167 ~~----~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 167 EN----GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HT----TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred Hc----CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 76 678999999999983 232 2699999999998 555599999999998751 2788
Q ss_pred HHHHHHHHhcCCCCccCHHHH-HHHHHHHHH
Q 023425 161 LYLLGTVYLTGDCVKKDIASA-LWCFHRASE 190 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~d~~~A-~~~~~~A~~ 190 (282)
++++|.+|.. .+++++| ..+|++|..
T Consensus 239 ~~~lg~~y~~----~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRK----LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHH----TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCcHHHHHHHHHHHHH
Confidence 9999999999 8999999 888999875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.17 E-value=7.3e-10 Score=85.90 Aligned_cols=112 Identities=14% Similarity=-0.011 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++... .+++
T Consensus 27 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~----~~~~ 98 (166)
T 1a17_A 27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT----ECYGYALGDATRAIELDKKYIKGYYRRAASNMAL----GKFR 98 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh----ccHH
Confidence 4477888888888777777777777787777754 466777777777764 45677777777777763 3347
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHH--HhcCCCCccCHHHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTV--YLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~--y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
+|+.+|+++.+. .++.++..++.+ +.. .+++++|+.++.++.
T Consensus 99 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 99 AALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHcccchH
Confidence 777777777765 455666444333 555 566777777776653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-10 Score=96.85 Aligned_cols=166 Identities=8% Similarity=-0.055 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
.+....++... -|+++++++.+|..+... ++.++|+..|++++ +++++++++.||.++...++. ++|
T Consensus 102 ~~~l~~~l~~~---lp~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~----~~A 170 (287)
T 3qou_A 102 EEAIRALLDXV---LPREEELXAQQAMQLMQE----SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRS----EDA 170 (287)
T ss_dssp HHHHHHHHHHH---SCCHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH----HHH
T ss_pred HHHHHHHHHHH---cCCchhhHHHHHHHHHhC----CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCH----HHH
Confidence 34444555555 488999999999999876 57899999999997 578999999999999995554 999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 023425 146 FYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKR 221 (282)
Q Consensus 146 ~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 221 (282)
+.+|+++... ........++..+.. .++.+.|+..|+++++. +++.++++||.+|.. .+++++|+..|
T Consensus 171 ~~~l~~~~~~~p~~~~~~~~~~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l 242 (287)
T 3qou_A 171 EAVLXTIPLQDQDTRYQGLVAQIELLX----QAADTPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELL 242 (287)
T ss_dssp HHHHTTSCGGGCSHHHHHHHHHHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHhCchhhcchHHHHHHHHHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHH
Confidence 9999999776 344555556666666 67778899999999875 689999999999998 89999999999
Q ss_pred HHHHH--------HHchhchhc--cCCCHHHHHHHHHHHHH
Q 023425 222 VSAAK--------KARANLESN--LMNPVEKAKEQFEVAAQ 252 (282)
Q Consensus 222 ~~a~~--------~a~~~lg~~--~~~~~~~A~~~~~~Aa~ 252 (282)
++++. .++.++|.. ..++.++|+.+|+++..
T Consensus 243 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 243 FGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99987 255667743 56677889999988864
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5e-10 Score=96.40 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=114.2
Q ss_pred cccchHHHHHHHHHHhhhhhHH---H--HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHh
Q 023425 29 LHSRNKKAMELIAKGWSALKEV---D--RVIDYCELNDRRLIPLLKTAKENFELALEADNSN------THARYWLSKLHL 97 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~------~~a~~~Lg~~~~ 97 (282)
..+++++|++.+.+........ . ...++..+......+++++|+.+|+++++..+.. ..++.+||.+|.
T Consensus 87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 3688999999999887633211 1 1122223343444568999999999999843332 347899999998
Q ss_pred cCCCCCcCHHHHHHHHHHHHh----C-C----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C----CHHH
Q 023425 98 KYHVPGACKAMGAALLVDAAN----M-G----DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----L----HPGA 160 (282)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~Aa~----~-g----~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g----~~~A 160 (282)
.. .++++|+.+|++|++ . + .+.+++++|.+|.. ..++++|+.++++|.+. + .+.+
T Consensus 167 ~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 167 EN----GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HT----TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred Hc----CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 76 578999999999984 1 2 34688999999999 55569999999999874 1 2789
Q ss_pred HHHHHHHHhcCCCCcc-CHHHHHHHHHHHHH
Q 023425 161 LYLLGTVYLTGDCVKK-DIASALWCFHRASE 190 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~ 190 (282)
++++|.+|.. .+ ++++|+.+|++|+.
T Consensus 239 ~~~lg~~~~~----~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRK----LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHH----TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hCCcHHHHHHHHHHHHH
Confidence 9999999998 77 57999999999975
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.9e-10 Score=82.84 Aligned_cols=108 Identities=16% Similarity=0.020 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGA 160 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A 160 (282)
.+.+++.+|..+... +++++|+.+|+++++ ++++.+++++|.+|.. ..++++|+.+|+++++. .++.+
T Consensus 3 ~a~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 3 KAEEARLEGKEYFTK----SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp HHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHH
Confidence 456677777777654 466777777777764 4567777777777776 33447777777777765 56777
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--------CHHHHHHHHHHH
Q 023425 161 LYLLGTVYLTGDCVKKDIASALWCFHRASEKG--------HAGAAIAYGSLL 204 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--------~~~a~~~Lg~~y 204 (282)
++.+|.+|.. .+++++|+.+|+++++.. ++.+...|+.+.
T Consensus 75 ~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 75 YIRKATAQIA----VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 7777777777 777777777777776543 344555555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=92.97 Aligned_cols=149 Identities=11% Similarity=0.032 Sum_probs=117.3
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++++|+..+.+++...+ ......+..+......+++++|+..|+++++.+| ++.....++.+..... .+...
T Consensus 18 ~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~---~~~~~ 92 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ---AAESP 92 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH---HTSCH
T ss_pred HcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh---cccch
Confidence 35679999999999887443 3344455555555566789999999999999998 8887777776543211 11134
Q ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 109 GAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL----HPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 109 A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
|+..|++++ .+++++++++||.++...++ +++|+.+|+++++.. ++.++..||.+|.. .++.++|+
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~----~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~A~ 164 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGR----DEEALELLWNILKVNLGAQDGEVKKTFMDILSA----LGQGNAIA 164 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH----HCSSCHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccc----HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH----hCCCCcHH
Confidence 789999997 46899999999999999444 599999999999874 36699999999998 89999999
Q ss_pred HHHHHHHH
Q 023425 183 WCFHRASE 190 (282)
Q Consensus 183 ~~~~~A~~ 190 (282)
.+|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.8e-11 Score=100.52 Aligned_cols=175 Identities=12% Similarity=-0.007 Sum_probs=139.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHH-------HHHHhcCCCCCcCHHHHHHHHHHHHh--CCC--------------
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWL-------SKLHLKYHVPGACKAMGAALLVDAAN--MGD-------------- 121 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~L-------g~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~-------------- 121 (282)
++|...|...|.++++.+|+.+++|..+ +.++.... ...+++..+.++++ ++.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~----r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAW----YSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHH----HTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHH----HHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 5789999999999999999999999988 66655432 22667777888775 122
Q ss_pred -------HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 122 -------PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL--HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 122 -------~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
.+....++.++...++ +++|.+.|......+ ++ +++.+|.++.. .+++++|+.+|+++....
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~----y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGN----YADAMEALEAAPVAGSEHL-VAWMKAVVYGA----AERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTC----HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----TTCHHHHHHHHTTGGGCS
T ss_pred ccccCCHhHHHHHHHHHHHHCCC----HHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----cCCHHHHHHHHHHhhccC
Confidence 3445557788888444 499999998887653 45 89999999999 899999999999887765
Q ss_pred CH----HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH---------HHchhchhc--cCCCHHHHHHHHHHHHHhccH
Q 023425 193 HA----GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK---------KARANLESN--LMNPVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 193 ~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g~~ 256 (282)
++ .++++||.++.. .+++++|+.||+++.. .+++++|.. ..++.++|...|+++......
T Consensus 166 d~~~~~~a~~~LG~al~~----LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAAN----LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CcccHHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 43 479999999998 8899999999999952 466777743 788999999999999998765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-09 Score=95.27 Aligned_cols=208 Identities=11% Similarity=-0.089 Sum_probs=120.6
Q ss_pred ccchHHHHHHHHHHhhhhhHHH----HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCC--CCH----HHHHHHHHHHhcC
Q 023425 30 HSRNKKAMELIAKGWSALKEVD----RVIDYCELNDRRLIPLLKTAKENFELALEADN--SNT----HARYWLSKLHLKY 99 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--g~~----~a~~~Lg~~~~~~ 99 (282)
.+++++|++++.+++....... .......+......+++++|..+|+++++..+ +++ .+..++|.++...
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 4567777777777665433211 11222333333345667777777777776432 222 2356677777654
Q ss_pred CCCCcCHHHHHHHHHHHHhC----C------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-------CHHHHH
Q 023425 100 HVPGACKAMGAALLVDAANM----G------DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-------HPGALY 162 (282)
Q Consensus 100 ~~~~~~~~~A~~~~~~Aa~~----g------~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-------~~~A~~ 162 (282)
.++++|+.+|+++++. + ...++.++|.++...+ ++++|..+++++.+.. ...++.
T Consensus 107 ----G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 107 ----GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA----RLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 4667777777777642 1 2345667777777633 3477777777776641 245667
Q ss_pred HHHHHHhcCCCCccCHHHHHHHHHHHHHc----CCH-HH--HH--HHHHHHHcCCCCcccHHHHHHHHHHHHHH------
Q 023425 163 LLGTVYLTGDCVKKDIASALWCFHRASEK----GHA-GA--AI--AYGSLLLRGVQVPECLTKLNAKRVSAAKK------ 227 (282)
Q Consensus 163 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~~-~a--~~--~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------ 227 (282)
.+|.++.. .+++++|+.+++++... +.+ .. .. .++.++.. .++++.|..+++++...
T Consensus 179 ~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 179 MLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp HHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH----CCCHHHHHHHHHhCCCCCCCcch
Confidence 77777777 77777787777777543 221 11 11 22333444 56677777777666431
Q ss_pred ----Hchhch--hccCCCHHHHHHHHHHHHHh
Q 023425 228 ----ARANLE--SNLMNPVEKAKEQFEVAAQA 253 (282)
Q Consensus 228 ----a~~~lg--~~~~~~~~~A~~~~~~Aa~~ 253 (282)
.+..++ ....+++++|..+++++.+.
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 122333 23556777777777776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.14 E-value=7.6e-09 Score=91.44 Aligned_cols=211 Identities=9% Similarity=-0.097 Sum_probs=154.5
Q ss_pred cccchHHHHHHHHHHhhhhhHHH-----HHHHHHhhcCCCchhhHHHHHHHHHHHHHcC--------CCCHHHHHHHHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVD-----RVIDYCELNDRRLIPLLKTAKENFELALEAD--------NSNTHARYWLSKL 95 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~g~~~a~~~Lg~~ 95 (282)
..+++++|++++.+++....... .......+......+++++|+.+|+++++.. |..+.++.++|.+
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 65 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence 36889999999999887443211 1122333444445577999999999998753 3345678889999
Q ss_pred HhcCCCCCcCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCHHHHH--
Q 023425 96 HLKYHVPGACKAMGAALLVDAANMG-------DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHPGALY-- 162 (282)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~~A~~-- 162 (282)
+... .++++|..+++++.+.. ...++.++|.++.. ..++++|+.+++++... +.+....
T Consensus 145 ~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 145 LWAW----ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHT----TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHh----cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 8865 57899999999998532 24688899999998 44559999999999764 3321111
Q ss_pred ---HHHHHHhcCCCCccCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH------
Q 023425 163 ---LLGTVYLTGDCVKKDIASALWCFHRASEKGH------AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK------ 227 (282)
Q Consensus 163 ---~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------ 227 (282)
.++.++.. .+++++|..+++++..... ..+...+|.++.. .+++++|..+++++...
T Consensus 217 ~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~ 288 (373)
T 1hz4_A 217 ANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL----LGEFEPAEIVLEELNENARSLRL 288 (373)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCcc
Confidence 23445666 7999999999999876432 3357789999988 78999999999998762
Q ss_pred ------Hchhch--hccCCCHHHHHHHHHHHHHhcc
Q 023425 228 ------ARANLE--SNLMNPVEKAKEQFEVAAQAGC 255 (282)
Q Consensus 228 ------a~~~lg--~~~~~~~~~A~~~~~~Aa~~g~ 255 (282)
.+..+| ....+++++|..+|++|.+...
T Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 289 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 333445 2367899999999999987654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-09 Score=82.07 Aligned_cols=126 Identities=8% Similarity=-0.028 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHH
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGA 160 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A 160 (282)
.+.+++.+|.++... .++++|+.+|+++++ +.++.+++++|.++.. ..++++|+.+|+++.+. .++.+
T Consensus 12 ~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 12 RAEELKTQANDYFKA----KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHH
Confidence 466788899998865 578999999999985 5689999999999998 45559999999999987 68999
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH--HHcCCCCcccHHHHHHHHHHHHH
Q 023425 161 LYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSL--LLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~--y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
++.+|.+|.. .+++++|+.+|+++++. .++.+...++.+ +.. .+++++|+.++.++..
T Consensus 84 ~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 84 YYRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHcccchHH
Confidence 9999999999 89999999999999875 467777555544 655 6777777777766644
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-09 Score=97.55 Aligned_cols=172 Identities=10% Similarity=-0.025 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhc-------CCCCCcC-----HHHHHHHHHHHHh---CCCHHHHHHHHHHHh
Q 023425 69 KTAKENFELALEADNSNTHARYWLSKLHLK-------YHVPGAC-----KAMGAALLVDAAN---MGDPDAQYELGCRLR 133 (282)
Q Consensus 69 ~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~-------~~~~~~~-----~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~ 133 (282)
..++..|++|+...|.++.+++.+|.++.. .+.. + .++|...|++|++ +.++..++.+|.++.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~--~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM--NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCC--HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccch--hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 477889999999999999999999999874 2211 1 2389999999985 578999999999998
Q ss_pred cCCCCcCCHHHHHHHHHHHHHcC--CH-HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC--HHHHHHHHHH-HHcC
Q 023425 134 VENDYVQSDQQAFYYIEKAVDQL--HP-GALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH--AGAAIAYGSL-LLRG 207 (282)
Q Consensus 134 ~g~~~~~d~~~A~~~~~kAa~~g--~~-~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~--~~a~~~Lg~~-y~~g 207 (282)
..+ ++++|...|+++++.. ++ .++..+|.++.. .+++++|+..|++|++... ...+...+.+ +..
T Consensus 333 ~~g----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~- 403 (530)
T 2ooe_A 333 SRM----KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC- 403 (530)
T ss_dssp HTT----CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH-
T ss_pred hcC----CHHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH-
Confidence 844 4599999999999973 44 588999999887 7899999999999998643 3444444444 222
Q ss_pred CCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 208 VQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 208 ~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
.+++++|...|+++++ ..+..++. ...++.++|+.+|++|+...
T Consensus 404 ---~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 404 ---SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp ---TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred ---cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 5789999999999987 34555563 36789999999999999974
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.9e-10 Score=84.54 Aligned_cols=77 Identities=21% Similarity=0.190 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC------
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH------ 193 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~------ 193 (282)
+.++.+||..++. ..++++|+.+|++|++. .++.+++++|.+|.. .+++++|+.+|++|++...
T Consensus 8 A~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 8 AIAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE----EKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH----hhhHHHHHHHHHHHHHhCcccchhh
Confidence 4566677777777 44447777777777765 567777778877777 7778888888887766421
Q ss_pred ---HHHHHHHHHHHHc
Q 023425 194 ---AGAAIAYGSLLLR 206 (282)
Q Consensus 194 ---~~a~~~Lg~~y~~ 206 (282)
..+++++|.+|..
T Consensus 80 ~~~a~~~~~lg~~~~~ 95 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQK 95 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466777777765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-09 Score=80.92 Aligned_cols=113 Identities=11% Similarity=-0.019 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH 157 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~ 157 (282)
.|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|+++.+. .+
T Consensus 12 ~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQK----GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp SSCHHHHHHHHHHHHHHT----TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHHCTTC
T ss_pred CcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCc
Confidence 467788999999998866 466999999999985 4588999999999988 44559999999999886 67
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
+.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.++.++..
T Consensus 84 ~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 84 IKGYTRKAAALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 8999999999998 88999999999999775 457788888888864
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.8e-10 Score=84.13 Aligned_cols=49 Identities=16% Similarity=0.051 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN 118 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~ 118 (282)
+++++|+.+|++|++.+|.++.+++++|.+|... .++++|+.+|++|++
T Consensus 22 ~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~----~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE----KKFAECVQFCEKAVE 70 (127)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh----hhHHHHHHHHHHHHH
Confidence 3466677777776666666666666666666654 455666666666654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-09 Score=85.68 Aligned_cols=111 Identities=13% Similarity=-0.001 Sum_probs=79.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH 157 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~ 157 (282)
++.++.+++.+|.++... .++++|+.+|+++++ +.++.+++++|.+|.. ..++++|+.+|+++++. .+
T Consensus 7 ~~~~a~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMAR----KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA----SGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp CCHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC
Confidence 344567777788877755 567888888888864 4677888888888877 34448888888888776 57
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLL 204 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y 204 (282)
+.+++++|.+|.. .+++++|+.+|+++++. +++.++++.+...
T Consensus 79 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 79 SKAWSRLGLARFD----MADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 7888888888887 78888888888887654 4455555555443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-08 Score=101.54 Aligned_cols=188 Identities=13% Similarity=-0.009 Sum_probs=140.9
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+.+++|.+.|.++-..... ....+. ..+++++|.+++++. ..+.+|+.+|..+... .++++|
T Consensus 1062 lglyEEAf~IYkKa~~~~~A--~~VLie------~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~----G~~kEA 1124 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVNTSA--VQVLIE------HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQK----GMVKEA 1124 (1630)
T ss_pred CCCHHHHHHHHHHcCCHHHH--HHHHHH------HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhC----CCHHHH
Confidence 56789999999886421111 112221 235689998888877 4799999999999977 466999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 110 AALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-HPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 110 ~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
+..|.+| ++++++..+|.++.. ..++++|+++|..|.+.. .+.....+|.+|.. .++++. ++.|.
T Consensus 1125 IdsYiKA---dD~say~eVa~~~~~----lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK----l~rlee-le~fI-- 1190 (1630)
T 1xi4_A 1125 IDSYIKA---DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETELIFALAK----TNRLAE-LEEFI-- 1190 (1630)
T ss_pred HHHHHhc---CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcccccccHHHHHHHHh----hcCHHH-HHHHH--
Confidence 9999887 899999999999998 445599999999988763 44455568888888 566663 44443
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhch--hccCCCHHHHHHHHHHHHHhccHHH
Q 023425 189 SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLE--SNLMNPVEKAKEQFEVAAQAGCNLG 258 (282)
Q Consensus 189 ~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g~~~a 258 (282)
+..+...+.++|..++. .++++.|..+|.++. .|..++ ....+++++|++.+++| +++.+
T Consensus 1191 -~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA~--ny~rLA~tLvkLge~q~AIEaarKA---~n~~a 1252 (1630)
T 1xi4_A 1191 -NGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNVS--NFGRLASTLVHLGEYQAAVDGARKA---NSTRT 1252 (1630)
T ss_pred -hCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhh--HHHHHHHHHHHhCCHHHHHHHHHHh---CCHHH
Confidence 45566778899999998 899999999999984 555555 34567899999999998 44444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.09 E-value=8.9e-09 Score=95.89 Aligned_cols=206 Identities=12% Similarity=-0.027 Sum_probs=152.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhcCCCc-------hhhHH-------HHHHHHHHHHH-cCCCCHHHHHHHHHHHhc
Q 023425 34 KKAMELIAKGWSALKEVDRVIDYCELNDRRL-------IPLLK-------TAKENFELALE-ADNSNTHARYWLSKLHLK 98 (282)
Q Consensus 34 ~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-------~A~~~~~~a~~-~~~g~~~a~~~Lg~~~~~ 98 (282)
++++..|.+++...+.. ....+..+..... .++++ +|...|++|++ ..|.++..++.+|.++..
T Consensus 255 ~~a~~~y~~al~~~p~~-~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHH-PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46777888887754432 2222222222111 34454 89999999997 789999999999999986
Q ss_pred CCCCCcCHHHHHHHHHHHHhC--CCH-HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHH-HhcCC
Q 023425 99 YHVPGACKAMGAALLVDAANM--GDP-DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL--HPGALYLLGTV-YLTGD 172 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~~--g~~-~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~-y~~g~ 172 (282)
. .+.++|...|+++++. .++ .++..+|.++... .+.++|...|++|.+.. ....+...+.+ +..
T Consensus 334 ~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~-- 403 (530)
T 2ooe_A 334 R----MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA----EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC-- 403 (530)
T ss_dssp T----TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH--
T ss_pred c----CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh----cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH--
Confidence 6 4779999999999975 344 5899999988773 34599999999999873 34445554544 333
Q ss_pred CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH----------chhch--hccCC
Q 023425 173 CVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKA----------RANLE--SNLMN 238 (282)
Q Consensus 173 g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a----------~~~lg--~~~~~ 238 (282)
.+++++|+.+|+++++. +++..+..++.++.. .++.++|..+|++++... |.... ....|
T Consensus 404 --~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~----~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 404 --SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp --TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred --cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 68899999999999875 578999999999987 789999999999998731 11111 12457
Q ss_pred CHHHHHHHHHHHHHhccH
Q 023425 239 PVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 239 ~~~~A~~~~~~Aa~~g~~ 256 (282)
+.+.+...+.++.+.-+.
T Consensus 478 ~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHCch
Confidence 888888888888876654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-10 Score=107.55 Aligned_cols=138 Identities=14% Similarity=0.060 Sum_probs=117.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCC---------------HHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGD---------------PDAQYE 127 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~---------------~~A~~~ 127 (282)
..++++|+..|+++++.+|.++.+++.+|..+... .++++|+.+|++|++ +.+ ..++++
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~----g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKG----GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence 35677888899999888888999999999999976 678999999999985 455 689999
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSL 203 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~ 203 (282)
+|.+|.. ..++++|+.+|.+|++. .++.+++++|.+|.. .+++++|+.+|++|++. .++.++.+|+.+
T Consensus 323 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 323 LAMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999 55559999999999987 789999999999999 99999999999999886 467889999999
Q ss_pred HHcCCCCcccHHHHH
Q 023425 204 LLRGVQVPECLTKLN 218 (282)
Q Consensus 204 y~~g~g~~~~~~~A~ 218 (282)
+.. .++++++.
T Consensus 395 ~~~----~~~~~~a~ 405 (457)
T 1kt0_A 395 QKK----AKEHNERD 405 (457)
T ss_dssp HHH----HHHHHHHH
T ss_pred HHH----HHHHHHHH
Confidence 987 56665543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-09 Score=81.14 Aligned_cols=95 Identities=9% Similarity=-0.115 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|+++.+++++|.++... .++++|+.+|+++++ +.++.+++++|.++.. ..+++
T Consensus 18 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~ 89 (126)
T 3upv_A 18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL----MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA----VKEYA 89 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HhCHH
Confidence 4599999999999999999999999999999976 578999999999985 6789999999999999 44559
Q ss_pred HHHHHHHHHHHcC--------CHHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQL--------HPGALYLLGTVY 168 (282)
Q Consensus 144 ~A~~~~~kAa~~g--------~~~A~~~Lg~~y 168 (282)
+|+.+|+++.+.. ++.+...|+.+.
T Consensus 90 ~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 90 SALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999998754 455666666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-09 Score=84.46 Aligned_cols=84 Identities=11% Similarity=-0.043 Sum_probs=75.6
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCC
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d 141 (282)
..+++++|+..|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ ++++.+++++|.+|... .+
T Consensus 33 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~----g~ 104 (148)
T 2vgx_A 33 QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM----GQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX----GE 104 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT----TC
T ss_pred HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc----CC
Confidence 345699999999999999999999999999999976 578999999999984 68999999999999994 44
Q ss_pred HHHHHHHHHHHHHc
Q 023425 142 DQQAFYYIEKAVDQ 155 (282)
Q Consensus 142 ~~~A~~~~~kAa~~ 155 (282)
+++|+.+|+++++.
T Consensus 105 ~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 105 LAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999886
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=84.95 Aligned_cols=95 Identities=14% Similarity=-0.112 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|.++.+++++|.+|... .++++|+.+|+++++ +.++.+++++|.+|.. ..+++
T Consensus 25 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~ 96 (164)
T 3sz7_A 25 KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS----GQHEKAAEDAELATVVDPKYSKAWSRLGLARFD----MADYK 96 (164)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHH
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHH
Confidence 4599999999999999999999999999999976 578999999999985 6789999999999999 45559
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVY 168 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y 168 (282)
+|+.+|+++++. +++.+++..+...
T Consensus 97 ~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 97 GAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999986 6677666666553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=83.32 Aligned_cols=83 Identities=10% Similarity=-0.100 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ ++++.+++++|.+|... .++
T Consensus 31 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~ 102 (142)
T 2xcb_A 31 AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL----GLYEQALQSYSYGALMDINEPRFPFHAAECHLQL----GDL 102 (142)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT----TCH
T ss_pred HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc----CCH
Confidence 35699999999999999999999999999999976 578999999999984 67999999999999994 455
Q ss_pred HHHHHHHHHHHHc
Q 023425 143 QQAFYYIEKAVDQ 155 (282)
Q Consensus 143 ~~A~~~~~kAa~~ 155 (282)
++|+.+|+++.+.
T Consensus 103 ~~A~~~~~~al~~ 115 (142)
T 2xcb_A 103 DGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999886
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-08 Score=74.41 Aligned_cols=113 Identities=24% Similarity=0.277 Sum_probs=90.2
Q ss_pred CCCC-HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C
Q 023425 82 DNSN-THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L 156 (282)
Q Consensus 82 ~~g~-~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g 156 (282)
+|.. +.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++... .++++|+.+|+++.+. .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp ---CHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTT
T ss_pred CccccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCc
Confidence 4444 77888899888865 577999999999875 46788899999988884 4459999999998876 5
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
++.+++.+|.+|.. .+++++|+.+|+++++. .++.+...+|.++..
T Consensus 76 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 76 NAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 78888999999988 88999999999998775 568888888887753
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=4.9e-09 Score=77.32 Aligned_cols=113 Identities=11% Similarity=-0.024 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH 157 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~ 157 (282)
+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+|.++... .+
T Consensus 8 ~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKV----ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK----LGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTC
T ss_pred chhhhHHHHHHHHHHHHc----cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hhchHHHHHHHHHHHhcCccC
Confidence 344566777777777754 466777777777764 4567777777877777 34447788888877765 56
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
+.+++.+|.+|.. .+++++|+.+|+++++. .++.+.+.+|.++..
T Consensus 80 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 80 SKAYGRMGLALSS----LNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 7777888888777 77788888888887664 457777777777764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.1e-10 Score=90.51 Aligned_cols=97 Identities=12% Similarity=-0.063 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHH
Q 023425 66 PLLKTAKENFELALEADNSNT----------------HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYE 127 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~----------------~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~ 127 (282)
+++++|+.+|+++++..|.++ .+++++|.+|... .++++|+.+|+++++ +.++.+++.
T Consensus 52 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~ 127 (198)
T 2fbn_A 52 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN----KDYPKAIDHASKVLKIDKNNVKALYK 127 (198)
T ss_dssp TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 446777777777776666665 5555555555543 344555555555543 345555555
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
+|.+|.. ..++++|+.+|+++++. .++.++..++.++..
T Consensus 128 lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 128 LGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5555555 33335555555555544 455555555555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.2e-09 Score=77.70 Aligned_cols=98 Identities=16% Similarity=0.018 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++
T Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 96 (131)
T 2vyi_A 25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL----GNYAGAVQDCERAICIDPAYSKAYGRMGLALSS----LNKH 96 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----hchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH----hCCH
Confidence 35699999999999999999999999999999866 578999999999985 5789999999999998 4455
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
++|+.+|+++.+. +++.++..+|.++..
T Consensus 97 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 97 VEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 9999999999987 689999999999876
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=8e-10 Score=89.33 Aligned_cols=133 Identities=12% Similarity=0.024 Sum_probs=107.1
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCH----------------H
Q 023425 62 RRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDP----------------D 123 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~----------------~ 123 (282)
....++++++.+.+....+..+..+..+..+|..+... .++++|+.+|.++++. .++ .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKK----NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 33445677777777766655566788899999999865 6889999999999964 444 8
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHH
Q 023425 124 AQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIA 199 (282)
Q Consensus 124 A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~ 199 (282)
+++++|.+|.. ..++++|+.+|.++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+...
T Consensus 90 ~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~ 161 (198)
T 2fbn_A 90 CNLNLATCYNK----NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNS 161 (198)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 99999999998 45569999999999987 689999999999999 99999999999999775 57899999
Q ss_pred HHHHHHc
Q 023425 200 YGSLLLR 206 (282)
Q Consensus 200 Lg~~y~~ 206 (282)
++.++..
T Consensus 162 l~~~~~~ 168 (198)
T 2fbn_A 162 YELCVNK 168 (198)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.3e-09 Score=85.07 Aligned_cols=146 Identities=12% Similarity=0.024 Sum_probs=110.0
Q ss_pred ccchHHHHH---HHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHhcCC
Q 023425 30 HSRNKKAME---LIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALE------ADNSNTHARYWLSKLHLKYH 100 (282)
Q Consensus 30 ~~~~~~A~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------~~~g~~~a~~~Lg~~~~~~~ 100 (282)
.+++++|.+ .+.. ............+......+++++|+.+|+++++ ..+..+.+++++|.++...
T Consensus 5 ~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~- 79 (203)
T 3gw4_A 5 AHDYALAERQAQALLA----HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA- 79 (203)
T ss_dssp --CHHHHHHHHHHHHT----STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-
T ss_pred cccHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-
Confidence 567788887 4422 2222333444444444556779999999999998 5556678999999999966
Q ss_pred CCCcCHHHHHHHHHHHHhC----C-C----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCH----HHHHH
Q 023425 101 VPGACKAMGAALLVDAANM----G-D----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHP----GALYL 163 (282)
Q Consensus 101 ~~~~~~~~A~~~~~~Aa~~----g-~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~----~A~~~ 163 (282)
.++++|+.+|+++.+. + + ..++.++|.++.. ..++++|+.+++++.+. +++ .++..
T Consensus 80 ---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 80 ---GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH----FGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5789999999999753 3 3 4578999999998 45559999999999863 443 45689
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 164 LGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 164 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+|.+|.. .+++++|+.++++|++.
T Consensus 153 la~~~~~----~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 153 LGDLAQQ----EKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 9999999 89999999999999763
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.2e-09 Score=78.95 Aligned_cols=98 Identities=9% Similarity=-0.062 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++++|.++.. ..++
T Consensus 29 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~ 100 (133)
T 2lni_A 29 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL----LEFQLALKDCEECIQLEPTFIKGYTRKAAALEA----MKDY 100 (133)
T ss_dssp TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----HhhH
Confidence 34599999999999999999999999999999865 678999999999985 5789999999999998 4455
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
++|+.+|+++.+. .++.++..++.++..
T Consensus 101 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 101 TKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999987 578899999998865
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.8e-09 Score=77.16 Aligned_cols=99 Identities=14% Similarity=-0.024 Sum_probs=75.2
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C
Q 023425 81 ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L 156 (282)
Q Consensus 81 ~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g 156 (282)
.++.++.+++.+|..+... .++++|+.+|+++++ +.++.+++++|.++.. ..++++|+.+|++++.. +
T Consensus 4 ~~~~~~~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVG----RKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp --CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT
T ss_pred CccccHHHHHHHHHHHHHh----CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCch
Confidence 3566788888888888765 567888888888874 5677888888888887 44458888888888775 5
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
++.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 76 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 76 SVKAHFFLGQCQLE----MESYDEAIANLQRAYSL 106 (137)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence 77888888888887 78888888888888764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.4e-08 Score=72.20 Aligned_cols=107 Identities=7% Similarity=-0.119 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGAL 161 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~ 161 (282)
+.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++++|+.+++++.+. .++.++
T Consensus 4 ~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSV----GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLKPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCcccHHHH
Confidence 45666677766644 456777777777653 4566777777777766 34447777777777665 466777
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLL 204 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y 204 (282)
+.+|.+|.. .+++++|+.+|+++++. +++.+...++.+.
T Consensus 76 ~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 76 SRKAAALEF----LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 777777776 67777777777777664 3566666666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-08 Score=74.89 Aligned_cols=114 Identities=11% Similarity=-0.046 Sum_probs=94.7
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 81 ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG--D---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 81 ~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.++.++..++.+|..+... .++++|+.+|+++++.. + +.+++++|.+|.. ..++++|+.+|+++++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKC----GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK----LEDYDKAETEASKAIEK 94 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhh
Confidence 4577889999999998865 57899999999998653 3 7889999999988 45559999999999876
Q ss_pred --CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 156 --LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 156 --g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
.++.+++.+|.+|.. .+++++|+.+|+++++. .++.+...++.+...
T Consensus 95 ~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 95 DGGDVKALYRRSQALEK----LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp TSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred CccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 578999999999998 89999999999999775 467888888877654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-09 Score=75.43 Aligned_cols=99 Identities=11% Similarity=-0.033 Sum_probs=79.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C-
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L- 156 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g- 156 (282)
+|+++.+++.+|.++... +++++|+.+|+++++ +.++.+++++|.++.. ..++++|+.+|+++.+. .
T Consensus 2 ~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDA----GNYTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp CCSSTTGGGGHHHHHHSS----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSCCT
T ss_pred CCCcHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCccc
Confidence 577788888888888855 577888888888875 4678888888888887 34458888888888876 4
Q ss_pred -CHHHHHHHHHHHhcCCCCc-cCHHHHHHHHHHHHHcC
Q 023425 157 -HPGALYLLGTVYLTGDCVK-KDIASALWCFHRASEKG 192 (282)
Q Consensus 157 -~~~A~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~g 192 (282)
++.+++.+|.+|.. . +++++|+.++++++...
T Consensus 74 ~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 74 YNKDVWAAKADALRY----IEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TCHHHHHHHHHHHTT----CSSCSHHHHHHHHHHGGGC
T ss_pred chHHHHHHHHHHHHH----HhCCHHHHHHHHHHHhhcc
Confidence 78888888888888 7 88888888888887653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.98 E-value=7.6e-10 Score=101.76 Aligned_cols=139 Identities=13% Similarity=-0.100 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSN---------------THARYWLSKLH 96 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~---------------~~a~~~Lg~~~ 96 (282)
++++|++.+...+. .........+..+..+...+++++|+.+|++|++.+|.+ ..+++++|.+|
T Consensus 249 ~~~~A~~~~~~~~~-~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTK-EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444332 112223334444444445567999999999999999998 79999999999
Q ss_pred hcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 023425 97 LKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGD 172 (282)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~ 172 (282)
... .++++|+.+|.+|++ +.++.+++++|.+|.. ..++++|+.+|++|++. .++.++..|+.++..
T Consensus 328 ~~~----g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~-- 397 (457)
T 1kt0_A 328 LKL----REYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK-- 397 (457)
T ss_dssp HHT----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH--
T ss_pred HHh----cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence 976 678999999999985 6799999999999999 45569999999999988 688999999999988
Q ss_pred CCccCHHHHHH
Q 023425 173 CVKKDIASALW 183 (282)
Q Consensus 173 g~~~d~~~A~~ 183 (282)
.+++++|..
T Consensus 398 --~~~~~~a~~ 406 (457)
T 1kt0_A 398 --AKEHNERDR 406 (457)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 777777654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.7e-09 Score=82.93 Aligned_cols=111 Identities=12% Similarity=-0.008 Sum_probs=92.0
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH-HhcCCCCccCH
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTV-YLTGDCVKKDI 178 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~-y~~g~g~~~d~ 178 (282)
.++++|+.+|+++++ +.++.+++.+|.+|.. ..++++|+.+|++++.. .++.+++.+|.+ |.. .+++
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~----~~~~ 95 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ----ASQH 95 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH----TTTC
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----cCCc
Confidence 567889999999874 5799999999999998 45569999999999886 689999999999 766 6777
Q ss_pred --HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 179 --ASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 179 --~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFM----QANYAQAIELWQKVMD 143 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cccHHHHHHHHHHHHh
Confidence 9999999999875 578999999999998 6777776666666654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-08 Score=76.39 Aligned_cols=125 Identities=15% Similarity=0.010 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAANM----GDP----DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-- 155 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~~----~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-- 155 (282)
+.+++.+|.++... .++++|+.+|+++.+. +++ .++.++|.++... .++++|+.+|+++.+.
T Consensus 9 ~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 9 GRAFGNLGNTHYLL----GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL----GEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHH
Confidence 45778888888865 5779999999998753 332 4788899999884 4459999999998774
Q ss_pred --CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 023425 156 --LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIAYGSLLLRGVQVPECLTKLNAKR 221 (282)
Q Consensus 156 --g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 221 (282)
++ +.+++++|.+|.. .+++++|+.+++++++. ++ +.++..+|.+|.. .+++++|..++
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 152 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFA 152 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH----ccCHHHHHHHH
Confidence 22 5678889999988 89999999999998753 22 5578888888887 77777777777
Q ss_pred HHHHH
Q 023425 222 VSAAK 226 (282)
Q Consensus 222 ~~a~~ 226 (282)
+++.+
T Consensus 153 ~~a~~ 157 (164)
T 3ro3_A 153 EKHLE 157 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-07 Score=82.30 Aligned_cols=223 Identities=11% Similarity=-0.002 Sum_probs=152.7
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCch--hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----hcCCCCCc
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLI--PLLKTAKENFELALEADNSNTHARYWLSKLH----LKYHVPGA 104 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~----~~~~~~~~ 104 (282)
...++|++.+.+.+...+.......+.. ...... .++++++.++.+++..+|.+..+++.-+.++ ...+. ..
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~-~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRF-NILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-DF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-CC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHH-HHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-cC
Confidence 3457888888888875554433333222 222222 3789999999999999999999999998888 43311 24
Q ss_pred CHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC---
Q 023425 105 CKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKD--- 177 (282)
Q Consensus 105 ~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d--- 177 (282)
+.++++.++.++++ +.+..+++.-+.++..-+.. +..+++.++.++++. .+..|++..+.++.. .+.
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~--~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~----l~~~~~ 198 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH--NDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS----KKHLAT 198 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS----SGGGCC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----ccccch
Confidence 66888899999874 56888998888887764433 113889999999887 688899998888876 343
Q ss_pred ---HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH---------HHchhchh--ccCCCHH
Q 023425 178 ---IASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK---------KARANLES--NLMNPVE 241 (282)
Q Consensus 178 ---~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------~a~~~lg~--~~~~~~~ 241 (282)
++++++++++++.. ++..|++.++.++..... ..+....++++... .+...++. ...++.+
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR---SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC---ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 88899999998765 678899888888876432 22223334443322 22333332 2567888
Q ss_pred HHHHHHHHHHH-hccHHHHHHHHH
Q 023425 242 KAKEQFEVAAQ-AGCNLGLRWLQR 264 (282)
Q Consensus 242 ~A~~~~~~Aa~-~g~~~a~~~l~~ 264 (282)
+|++.|+++++ .......+|.-+
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHHHH
Confidence 99999999887 566666666543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-08 Score=73.09 Aligned_cols=96 Identities=11% Similarity=-0.075 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++... .++
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~ 88 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK----GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL----NRF 88 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH----hhH
Confidence 35699999999999999999999999999999865 578999999999985 56899999999999984 455
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVY 168 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y 168 (282)
++|+.+|+++.+. +++.++..++.+.
T Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 89 EEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999987 6788888888775
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-09 Score=79.05 Aligned_cols=82 Identities=13% Similarity=0.018 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+..|+++++.+|+++.+++.||.++... .++++|+..|++|++ +++++++++||.+|.. ..+++
T Consensus 31 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~----g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~----~g~~~ 102 (121)
T 1hxi_A 31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN----EKDGLAIIALNHARMLDPKDIAVHAALAVSHTN----EHNAN 102 (121)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Confidence 3478888888888888888888888888888765 466788888888764 5677788888877776 33447
Q ss_pred HHHHHHHHHHHc
Q 023425 144 QAFYYIEKAVDQ 155 (282)
Q Consensus 144 ~A~~~~~kAa~~ 155 (282)
+|+.+|+++++.
T Consensus 103 ~A~~~~~~al~~ 114 (121)
T 1hxi_A 103 AALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 777777777664
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.4e-09 Score=82.92 Aligned_cols=90 Identities=11% Similarity=0.059 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCC------cCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCC
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPG------ACKAMGAALLVDAA--NMGDPDAQYELGCRLRVEND 137 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~------~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~ 137 (282)
..+++|++.|+++++.+|+++++++++|.++....... ..+++|+..|++|+ ++.+++|+++||.+|...+.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 45899999999999999999999999999988542221 12568888899887 45688899999988875321
Q ss_pred -Cc------CCHHHHHHHHHHHHHc
Q 023425 138 -YV------QSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 138 -~~------~d~~~A~~~~~kAa~~ 155 (282)
+| .++++|+.+|++|++.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh
Confidence 11 2457777777777776
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.5e-10 Score=95.38 Aligned_cols=180 Identities=8% Similarity=-0.117 Sum_probs=136.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHH-HHHHHh-----hcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHH------------
Q 023425 30 HSRNKKAMELIAKGWSALKEVDR-VIDYCE-----LNDRRLIPLLKTAKENFELALEADNSNTHARYW------------ 91 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~------------ 91 (282)
..+...|.+.|.++....+.... ..++.. +..........+++..+++++++.|++-.+.+.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 46689999999998775553322 222210 011111234678888999999887777777776
Q ss_pred ---------HHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCH--
Q 023425 92 ---------LSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHP-- 158 (282)
Q Consensus 92 ---------Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~-- 158 (282)
++.++... .++++|.+.|.... .++++ +.+.+|.++.. .+++++|+.+|+++....++
T Consensus 99 ~~r~dl~LayA~~L~~~----g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQ----GNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA----AERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp SSHHHHHHHHHHHHHHH----TCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----TTCHHHHHHHHTTGGGCSCHHH
T ss_pred CCHhHHHHHHHHHHHHC----CCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----cCCHHHHHHHHHHhhccCCccc
Confidence 55666644 57799999998886 44566 99999999999 66679999999988776433
Q ss_pred --HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 159 --GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-----HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 159 --~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+.+.||.++.. .+++++|+.||+++.... .+++.+++|.++.. .++.++|...|+++..
T Consensus 170 ~~~a~~~LG~al~~----LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~----lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 170 AGAAGVAHGVAAAN----LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS----QGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 589999999999 999999999999998654 35689999999999 8999999999998875
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-08 Score=73.37 Aligned_cols=109 Identities=9% Similarity=-0.029 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC---
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH--- 157 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~--- 157 (282)
.+.+++.+|.++... .++++|+.+|+++++ +.++.+++++|.+|.. ..++++|+.+|+++... .+
T Consensus 3 ~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 3 QALKEKELGNDAYKK----KDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHh----cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhccccchh
Confidence 356677777777754 466788888887764 3567777788877776 44457888888887765 23
Q ss_pred ----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 023425 158 ----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-GHAGAAIAYGSLLL 205 (282)
Q Consensus 158 ----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-g~~~a~~~Lg~~y~ 205 (282)
+.+++.+|.+|.. .+++++|+.+|+++++. .++.....++.+..
T Consensus 75 ~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFK----EEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7778888888887 78888888888888775 35666666666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-08 Score=72.34 Aligned_cols=98 Identities=23% Similarity=0.184 Sum_probs=86.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++..|+++.+++.+|.++... .++++|+.+|+++++ +.++.+++.+|.++.. ..++
T Consensus 22 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~ 93 (125)
T 1na0_A 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDY 93 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCH
T ss_pred cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCH
Confidence 45699999999999999999999999999999876 578999999999985 5689999999999998 4455
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
++|+.+|+++.+. .++.+...+|.++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 94 DEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 9999999999886 689999999988754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-08 Score=74.24 Aligned_cols=96 Identities=22% Similarity=0.082 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCH
Q 023425 119 MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHA 194 (282)
Q Consensus 119 ~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~ 194 (282)
+.++.+++.+|.++.. ..++++|+.+|++++.. .++.+++++|.+|.. .+++++|+.+|++++.. +++
T Consensus 6 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 6 SPSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSV 77 (137)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCH
T ss_pred cccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCchhH
Confidence 4578999999999998 55559999999999986 689999999999999 89999999999999875 578
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+++++|.+|.. .+++++|+.+|+++..
T Consensus 78 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 78 KAHFFLGQCQLE----MESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence 999999999998 6777766666665544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-07 Score=93.91 Aligned_cols=188 Identities=11% Similarity=-0.025 Sum_probs=135.0
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|+++..+.. ...+.+..+......+++++|++.|.+| +++.+++.+|..+... .++++|
T Consensus 1089 i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~l----GkyEEA 1153 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTS----GNWEEL 1153 (1630)
T ss_pred HhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHc----CCHHHH
Confidence 456777777666431 2344556666666778899999999998 6899999999999976 578999
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 110 AALLVDAANMG-DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 110 ~~~~~~Aa~~g-~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
+++|..|.+.. ++..-..+|..|...+.. + +++.|. ...+...+..+|..++. .+++++|..+|.+|
T Consensus 1154 IeyL~mArk~~~e~~Idt~LafaYAKl~rl----e-ele~fI---~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1154 VKYLQMARKKARESYVETELIFALAKTNRL----A-ELEEFI---NGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHhhcCH----H-HHHHHH---hCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh
Confidence 99999998643 334455688888774332 4 344443 44466777788888888 88899999999886
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-HHch------------hc------------------h--hc
Q 023425 189 SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK-KARA------------NL------------------E--SN 235 (282)
Q Consensus 189 ~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~a~~------------~l------------------g--~~ 235 (282)
.-+..++.+|.+ .++++.|+..+++|.. .+|. .+ + +.
T Consensus 1222 ------~ny~rLA~tLvk----Lge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1222 ------SNFGRLASTLVH----LGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQ 1291 (1630)
T ss_pred ------hHHHHHHHHHHH----hCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHH
Confidence 477888888887 5778888888887754 2221 11 1 22
Q ss_pred cCCCHHHHHHHHHHHHHhc
Q 023425 236 LMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 236 ~~~~~~~A~~~~~~Aa~~g 254 (282)
..+.+++|+.+++++....
T Consensus 1292 ~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HcCCHHHHHHHHHHHhccC
Confidence 5677888888888886544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-08 Score=87.31 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHHcCCCCH-----------------HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CCH---
Q 023425 67 LLKTAKENFELALEADNSNT-----------------HARYWLSKLHLKYHVPGACKAMGAALLVDAANM----GDP--- 122 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~-----------------~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~~--- 122 (282)
++++|++.|+++++..+... .+...||.+|... +++++|+.+|.++.+. +..
T Consensus 19 ~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 19 QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTM----GAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHccchHHH
Confidence 35666666666665444332 3577888888855 5678888888887641 221
Q ss_pred -HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--
Q 023425 123 -DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-- 191 (282)
Q Consensus 123 -~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-- 191 (282)
.....+|.++.. +.++++|+.+++++... .......+||.+|.. .+++.+|+.+++++...
T Consensus 95 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 95 KVLKTLIEKFEQV----PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ----KKQYKDSLALINDLLREFK 166 (434)
T ss_dssp HHHHHHHHHHCSC----CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHH
Confidence 234456666655 44568888888887653 236677888888888 88888888888887542
Q ss_pred ------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH-------------Hchhchh--ccCCCHHHHHHHHHHH
Q 023425 192 ------GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK-------------ARANLES--NLMNPVEKAKEQFEVA 250 (282)
Q Consensus 192 ------g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------a~~~lg~--~~~~~~~~A~~~~~~A 250 (282)
....++..+|.+|.. .+|+++|..+|+++... .+..+|. ...+++.+|..+|..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 136678888888887 78888888888887652 1223442 3677888888888888
Q ss_pred HHh
Q 023425 251 AQA 253 (282)
Q Consensus 251 a~~ 253 (282)
.+.
T Consensus 243 ~~~ 245 (434)
T 4b4t_Q 243 FES 245 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.90 E-value=6.6e-09 Score=89.16 Aligned_cols=83 Identities=14% Similarity=-0.056 Sum_probs=72.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+.+|+++++.+|.++.+++++|.+|... .++++|+..|+++++ ++++.+++++|.+|... .++
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~ 88 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM----QQPEQALADCRRALELDGQSVKAHFFLGQCQLEM----ESY 88 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT----TCH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCH
Confidence 35599999999999999999999999999999876 578999999999985 57899999999999984 455
Q ss_pred HHHHHHHHHHHHc
Q 023425 143 QQAFYYIEKAVDQ 155 (282)
Q Consensus 143 ~~A~~~~~kAa~~ 155 (282)
++|+.+|+++.+.
T Consensus 89 ~~A~~~~~~al~l 101 (281)
T 2c2l_A 89 DEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-08 Score=75.92 Aligned_cols=93 Identities=15% Similarity=-0.028 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 023425 88 ARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYL 163 (282)
Q Consensus 88 a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~ 163 (282)
.++.+|..+... .++++|+..|++++ +++++.+++.||.++...+ ++++|+.+|+++++. +++.+++.
T Consensus 19 ~~~~~g~~~~~~----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g----~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKL----ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE----KDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHc----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 467788887755 57789999999987 4678899999999888844 448999999998887 68889999
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 164 LGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 164 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
||.+|.. .+++++|+.+|+++++..
T Consensus 91 la~~~~~----~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 91 LAVSHTN----EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 9999888 888999999999887653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.89 E-value=4.8e-09 Score=96.99 Aligned_cols=117 Identities=15% Similarity=0.006 Sum_probs=98.6
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcC
Q 023425 58 ELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVE 135 (282)
Q Consensus 58 ~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g 135 (282)
.+......+++++|+.+|++|++.+|.++.+++++|.+|... .++++|+.+|++|++ +.++.+++++|.+|..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~- 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT----ECYGYALGDATRAIELDKKYIKGYYRRAASNMA- 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 344455568899999999999999999999999999999976 578999999999986 5789999999999998
Q ss_pred CCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH--HhcCCCCccCHHHHHHHHH
Q 023425 136 NDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTV--YLTGDCVKKDIASALWCFH 186 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~--y~~g~g~~~d~~~A~~~~~ 186 (282)
..++++|+.+|+++.+. +++.++..++.+ +.. .+++++|+..++
T Consensus 87 ---~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 ---LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDE 134 (477)
T ss_dssp ---HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC-----
T ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhcccc
Confidence 45559999999999987 678899999988 777 789999999999
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.6e-09 Score=89.58 Aligned_cols=98 Identities=14% Similarity=-0.022 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 023425 83 NSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHP 158 (282)
Q Consensus 83 ~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~ 158 (282)
|.++.+++.+|..+... +++++|+..|+++++ +.++.+++++|.+|.. ..++++|+.+|+++++. +++
T Consensus 1 p~~a~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVG----RKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTTCH
T ss_pred ChhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCH
Confidence 56789999999999976 678999999999985 6799999999999998 44559999999999987 789
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 159 GALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 159 ~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
.+++++|.+|.. .+++++|+.+|+++++..
T Consensus 73 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 73 KAHFFLGQCQLE----MESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 999999999999 899999999999998753
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-06 Score=76.06 Aligned_cols=228 Identities=8% Similarity=-0.087 Sum_probs=167.2
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCC---------chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRR---------LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV 101 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~ 101 (282)
...++|++++.+.+...+.......+....-.. ....+++++.++.+++..+|.++.+|+.-+.++...+.
T Consensus 44 e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 44 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp CCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc
Confidence 345689999999888666444333222111000 11237899999999999999999999999999886532
Q ss_pred CCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC-----
Q 023425 102 PGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGD----- 172 (282)
Q Consensus 102 ~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~----- 172 (282)
.++++++.++.++++ +.+..|++.-+.++...+. ..++++.++.++++. .+..|++..+.++..-.
T Consensus 124 --~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~---~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 124 --PNWARELELCARFLEADERNFHCWDYRRFVAAQAAV---APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred --ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence 368999999999985 5789999999988876443 148999999999987 79999999998876521
Q ss_pred -----CCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCc-------ccHHHHHHHHHHHHH----HHchhchh
Q 023425 173 -----CVKKDIASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVP-------ECLTKLNAKRVSAAK----KARANLES 234 (282)
Q Consensus 173 -----g~~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~-------~~~~~A~~~~~~a~~----~a~~~lg~ 234 (282)
...+.++++++++.+++. .++..+++.+..++..+.|.. .-+++++.+++...+ ..|..++.
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 112568999999999976 478999988888888765532 346778888888876 23333331
Q ss_pred -------ccCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 023425 235 -------NLMNPVEKAKEQFEVAAQAGCNLGLRWLQ 263 (282)
Q Consensus 235 -------~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~ 263 (282)
-..+..++...|+.+.++.++.-.-++..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d 314 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 314 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHH
Confidence 13456788999999999888766655543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-07 Score=70.16 Aligned_cols=112 Identities=20% Similarity=0.103 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--C----
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--H---- 193 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~---- 193 (282)
+.+++.+|.++.. ..++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++.. +
T Consensus 4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhccccchhH
Confidence 5778899999988 44559999999999886 578999999999998 899999999999997753 3
Q ss_pred ---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH
Q 023425 194 ---AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAG-CNLGLRWLQRIEEEE 269 (282)
Q Consensus 194 ---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g-~~~a~~~l~~l~~~~ 269 (282)
+.+++++|.+|.. .+++ ++|+.+|+++.+.. ++.....+..+....
T Consensus 76 ~~~~~~~~~la~~~~~----~~~~--------------------------~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 76 RQIAKAYARIGNSYFK----EEKY--------------------------KDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHHHH----TTCH--------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----hccH--------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7788889988887 4555 56777777777754 566666777766655
Q ss_pred hh
Q 023425 270 KR 271 (282)
Q Consensus 270 ~~ 271 (282)
+.
T Consensus 126 ~~ 127 (131)
T 1elr_A 126 KE 127 (131)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.6e-07 Score=79.47 Aligned_cols=194 Identities=9% Similarity=-0.080 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHH----hcCCCCcCC
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRL----RVENDYVQS 141 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y----~~g~~~~~d 141 (282)
.++|+..+.++++.+|.+..+++.-|.++...+. .++++++.++.+++. +.+..+++.-+.++ ...+. ..+
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~--~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-~~~ 125 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPN--RNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-DFD 125 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT--SCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-CCC
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc--ccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-cCC
Confidence 4789999999999999999999999999986632 478999999999984 67899999999888 44311 245
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH--HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC--Cccc
Q 023425 142 DQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIA--SALWCFHRASEK--GHAGAAIAYGSLLLRGVQ--VPEC 213 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~--~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g--~~~~ 213 (282)
+++++.++.++++. .+..|++..+.++.. .++++ +++.++.++++. .+..|+.+.+.++..-.. ....
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~----l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDT----FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence 69999999999987 689999999999887 56666 999999999886 578999999999887311 1122
Q ss_pred HHHHHHHHHHHHH------HHchhchhc---cCCCHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHH
Q 023425 214 LTKLNAKRVSAAK------KARANLESN---LMNPVEKAKEQFEVAAQAG-----CNLGLRWLQRIEEE 268 (282)
Q Consensus 214 ~~~A~~~~~~a~~------~a~~~lg~~---~~~~~~~A~~~~~~Aa~~g-----~~~a~~~l~~l~~~ 268 (282)
+++++.++.+++. .+|+.++.. ..........+..+..+.+ ++.|...++.+..+
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 8889999999997 577777633 2233555666777777655 77888888888764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.1e-09 Score=76.92 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCc
Q 023425 65 IPLLKTAKENFELALEA---DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~---~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
.+++++|+.+|+++++. +|.++.+++.||.+|... .++++|+.+|+++++ ++++.+++++|.++.. .
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~ 74 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL----GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN----L 74 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----H
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----c
Confidence 35678888888888877 577788888888888765 566888888888874 5678888888888877 3
Q ss_pred CCHHHHHHHHHHHHHc--CCHHH
Q 023425 140 QSDQQAFYYIEKAVDQ--LHPGA 160 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~--g~~~A 160 (282)
.++++|+.+|++++.. +++..
T Consensus 75 g~~~~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 75 GRYEQGVELLLKIIAETSDDETI 97 (117)
T ss_dssp TCHHHHHHHHHHHHHHHCCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHH
Confidence 4448888888888765 44443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.3e-08 Score=75.36 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=92.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHH
Q 023425 65 IPLLKTAKENFELALEADNSNT------HARYWLSKLHLKYHVPGACKAMGAALLVDAANM----GD----PDAQYELGC 130 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~------~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~ 130 (282)
.+++++|+.+|+++++..+..+ .++..+|.++... .++++|+.+|+++.+. ++ ..+++++|.
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 97 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL----GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 97 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3568999999999987533222 4888999999866 5789999999999753 33 568899999
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 131 RLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 131 ~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
++.. ..++++|+.+++++.+. ++ +.++..+|.+|.. .+++++|+.+++++.+.
T Consensus 98 ~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 98 TYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHHH----HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHH
Confidence 9998 45559999999999864 33 5688999999999 99999999999998753
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.5e-08 Score=74.96 Aligned_cols=108 Identities=8% Similarity=-0.128 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--------------------CCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--------------------MGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--------------------~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+.++..+|..+... .++++|+.+|.+|++ +.++.+++++|.+|.. ..++++|
T Consensus 11 a~~~~~~G~~~~~~----~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~A 82 (162)
T 3rkv_A 11 VEALRQKGNELFVQ----KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN----IGDLHEA 82 (162)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH----HTCHHHH
T ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh----cCcHHHH
Confidence 34555556555543 355666666666653 3456788888888887 4555888
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CH-HHHHHHHHHHH
Q 023425 146 FYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HA-GAAIAYGSLLL 205 (282)
Q Consensus 146 ~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~-~a~~~Lg~~y~ 205 (282)
+.++.++++. .++.+++.+|.+|.. .+++++|+.+|++++... ++ .....|+.+..
T Consensus 83 ~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 83 EETSSEVLKREETNEKALFRRAKARIA----AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 8888888876 678888888888888 888888888888887753 44 44555655544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=71.99 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--C--
Q 023425 119 MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--G-- 192 (282)
Q Consensus 119 ~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g-- 192 (282)
++++.+++.+|.++.. ..++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .
T Consensus 3 p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~ 74 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYD----AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN----LERYEEAVDCYNYVINVIEDEY 74 (112)
T ss_dssp CSSTTGGGGHHHHHHS----SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSCCTT
T ss_pred CCcHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCcccc
Confidence 5677888999999998 45569999999999987 689999999999999 89999999999999886 4
Q ss_pred CHHHHHHHHHHHHcCCCCc-ccHHHHHHHHHHHHH
Q 023425 193 HAGAAIAYGSLLLRGVQVP-ECLTKLNAKRVSAAK 226 (282)
Q Consensus 193 ~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~ 226 (282)
++.+++++|.+|.. . +++++|+.++++++.
T Consensus 75 ~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 75 NKDVWAAKADALRY----IEGKEVEAEIAEARAKL 105 (112)
T ss_dssp CHHHHHHHHHHHTT----CSSCSHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHH----HhCCHHHHHHHHHHHhh
Confidence 78999999999988 6 777777777766543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.6e-08 Score=73.13 Aligned_cols=97 Identities=18% Similarity=0.040 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcC
Q 023425 66 PLLKTAKENFELALEADNSN---THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQ 140 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~---~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~ 140 (282)
+++++|+.+|+++++.+|++ +.+++.+|.+|... .++++|+.+|+++++ +.++.+++.+|.++.. ..
T Consensus 42 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~ 113 (148)
T 2dba_A 42 GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL----EDYDKAETEASKAIEKDGGDVKALYRRSQALEK----LG 113 (148)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH----HT
T ss_pred CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH----cC
Confidence 45999999999999999887 89999999999876 678999999999985 5789999999999998 55
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
++++|+.+|+++.+. .++.+...++.+...
T Consensus 114 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 114 RLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 569999999999887 678888888887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-07 Score=70.68 Aligned_cols=93 Identities=18% Similarity=0.131 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCH---HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC--
Q 023425 87 HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDP---DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LH-- 157 (282)
Q Consensus 87 ~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~---~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~-- 157 (282)
++++.+|..+... +++++|+..|+++++ ++++ .+++.+|.++.. ..++++|+.+|+++++. ++
T Consensus 3 ~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 3 RTAYNVAFDALKN----GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp CCHHHHHHHHHHT----TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHHh----CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHCCCCcc
Confidence 3456666666644 456777777777664 3444 567777777766 33447777777777664 34
Q ss_pred -HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 158 -PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 158 -~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 75 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 75 AAGGLLKLGLSQYG----EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 6667777777776 67777777777777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-08 Score=78.00 Aligned_cols=96 Identities=11% Similarity=-0.062 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHH
Q 023425 66 PLLKTAKENFELALEA------------------DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQ 125 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~------------------~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~ 125 (282)
+++++|+.+|+++++. +|.++.+++++|.+|... .++++|+.++.++++ +.++.++
T Consensus 25 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----~~~~~A~~~~~~al~~~p~~~~a~ 100 (162)
T 3rkv_A 25 KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI----GDLHEAEETSSEVLKREETNEKAL 100 (162)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhcCCcchHHH
Confidence 4488999999999887 777789999999999866 578999999999984 6799999
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCH-HHHHHHHHHHh
Q 023425 126 YELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHP-GALYLLGTVYL 169 (282)
Q Consensus 126 ~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~-~A~~~Lg~~y~ 169 (282)
+.+|.+|... .++++|+.+|+++++. +++ .....|+.+..
T Consensus 101 ~~~g~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 101 FRRAKARIAA----WKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999994 4559999999999987 455 44556666543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.77 E-value=8.8e-08 Score=74.99 Aligned_cols=92 Identities=10% Similarity=-0.109 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C-------C-----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 123 DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L-------H-----PGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 123 ~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g-------~-----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
..+.++|..++. ..++++|+.+|.+|++. . + +.++.++|.++.. .+++++|+.+|.+|
T Consensus 12 ~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~----Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 12 YLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Confidence 344445555544 22335555555555543 2 1 2277777777777 77777777777777
Q ss_pred HHc---------CCHHHH----HHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 189 SEK---------GHAGAA----IAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 189 ~~~---------g~~~a~----~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
++. +++.++ +++|.++.. .+++++|+..|++|++
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHHh
Confidence 655 456667 777777776 6666666666666655
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.5e-08 Score=71.10 Aligned_cols=93 Identities=16% Similarity=0.085 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCC---HHHHHHHHHHHhcCCC
Q 023425 66 PLLKTAKENFELALEADNSNT---HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGD---PDAQYELGCRLRVEND 137 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~---~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~---~~A~~~Lg~~y~~g~~ 137 (282)
+++++|+..|+++++..|+++ .+++.+|.++... +++++|+.+|+++++ +++ +++++.+|.+|..
T Consensus 16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~--- 88 (129)
T 2xev_A 16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT----RNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG--- 88 (129)
T ss_dssp TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH---
Confidence 559999999999999999999 8999999999976 678999999999985 567 8999999999998
Q ss_pred CcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 023425 138 YVQSDQQAFYYIEKAVDQ--LHPGALYLLGT 166 (282)
Q Consensus 138 ~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~ 166 (282)
..++++|+.+|+++++. +++.+...+..
T Consensus 89 -~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 89 -EGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp -TTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 44559999999999986 45555444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.3e-09 Score=99.12 Aligned_cols=121 Identities=8% Similarity=-0.027 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGAL 161 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~ 161 (282)
+.+++.+|.++... .++++|+.+|++|++ +.++.+++++|.+|.. ..++++|+.+|++|++. .++.++
T Consensus 6 a~~~~~lg~~~~~~----g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~ 77 (477)
T 1wao_1 6 AEELKTQANDYFKA----KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKGY 77 (477)
T ss_dssp HTTSSSSSSSTTTT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34455566666543 688999999999985 5789999999999999 45559999999999997 689999
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH--HHcCCCCcccHHHHHHHHH
Q 023425 162 YLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSL--LLRGVQVPECLTKLNAKRV 222 (282)
Q Consensus 162 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~--y~~g~g~~~~~~~A~~~~~ 222 (282)
+++|.+|.. .+++++|+.+|++|++. +++.+..+++.+ +.. .+++++|+..++
T Consensus 78 ~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~ 134 (477)
T 1wao_1 78 YRRAASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC-----
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhcccc
Confidence 999999999 99999999999999875 567889999988 666 688888888888
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-07 Score=84.91 Aligned_cols=109 Identities=13% Similarity=0.005 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh------------------CCCHHHHHHHHHHHhcCCCCcCCHHHHHH
Q 023425 86 THARYWLSKLHLKYHVPGACKAMGAALLVDAAN------------------MGDPDAQYELGCRLRVENDYVQSDQQAFY 147 (282)
Q Consensus 86 ~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~------------------~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~ 147 (282)
+.++..+|..+... .++++|+..|++|++ +.++.+++++|.+|.. ..++++|+.
T Consensus 223 a~~~~~~g~~~~~~----g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~g~~~~A~~ 294 (370)
T 1ihg_A 223 SEDLKNIGNTFFKS----QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK----MSDWQGAVD 294 (370)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHHH
Confidence 55677888888765 577888888888876 2457889999999998 455599999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 148 YIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 148 ~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
+|++|++. .++.+++++|.+|.. .+++++|+.+|++|++. .++.+...|+.++..
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999987 689999999999999 89999999999999775 578888899988876
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.76 E-value=3.7e-08 Score=77.10 Aligned_cols=94 Identities=16% Similarity=-0.024 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++++|+..|++|++.+|.+|.+ . .-+. .+.++.+++++|.++..-++ +++|
T Consensus 25 g~~eeAi~~Y~kAL~l~p~~~~~---------~----a~~~-----------~~~~a~a~~n~g~al~~Lgr----~~eA 76 (159)
T 2hr2_A 25 GEYDEAAANCRRAMEISHTMPPE---------E----AFDH-----------AGFDAFCHAGLAEALAGLRS----FDEA 76 (159)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTT---------S----CCCH-----------HHHHHHHHHHHHHHHHHTTC----HHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcch---------h----hhhh-----------ccchHHHHHHHHHHHHHCCC----HHHH
Confidence 45999999999999998885432 0 0000 00122355555555555332 3555
Q ss_pred HHHHHHHHHc---------CCHHHH----HHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 146 FYYIEKAVDQ---------LHPGAL----YLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 146 ~~~~~kAa~~---------g~~~A~----~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+.+|.+|++. +++.++ +++|.++.. .+++++|+.+|++|++.
T Consensus 77 l~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 77 LHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence 5555555544 455666 777777777 77777777777777654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-08 Score=88.62 Aligned_cols=139 Identities=14% Similarity=0.033 Sum_probs=66.1
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCC
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVEN 136 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~ 136 (282)
..+..+...+++++|+.+|++|++..|.++. +.. ..+..++...+. ..+++++|.+|...+
T Consensus 184 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~----~~~~~~~~~~l~-------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 184 MDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQL----YGKYQDMALAVK-------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTC----CHHHHHHHHHHH-------THHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhh----cccHHHHHHHHH-------HHHHHHHHHHHHHcC
Confidence 3344444556678888888888777655441 000 011122222111 136777777777744
Q ss_pred CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCCCCcc
Q 023425 137 DYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE--KGHAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~ 212 (282)
.. ++|+.+|.++++. .++.+++++|.+|.. .+++++|+.+|+++++ .+++.+...|+.+...- ..
T Consensus 245 ~~----~~A~~~~~~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~---~~ 313 (338)
T 2if4_A 245 RY----DEAIGHCNIVLTEEEKNPKALFRRGKAKAE----LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE---KA 313 (338)
T ss_dssp CC----HHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHTTC------------------------
T ss_pred CH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---HH
Confidence 44 7777777777765 567777778877777 7777788887777754 35667777777764432 44
Q ss_pred cHHHHHHHHHHHH
Q 023425 213 CLTKLNAKRVSAA 225 (282)
Q Consensus 213 ~~~~A~~~~~~a~ 225 (282)
..+++...|+++.
T Consensus 314 ~~~~a~~~~~~~l 326 (338)
T 2if4_A 314 LYQKQKEMYKGIF 326 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHhh
Confidence 4555555555554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.1e-07 Score=68.00 Aligned_cols=90 Identities=18% Similarity=0.008 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHH
Q 023425 70 TAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFY 147 (282)
Q Consensus 70 ~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~ 147 (282)
+|+..|+++++.+|.++.+++.+|.+|... .++++|+.+|+++++ +.++.++++||.+|.. ..++++|+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH----EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG----QGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----cCCHHHHHH
Confidence 577888999888899999999999988865 567889999998874 5678888888888887 444588888
Q ss_pred HHHHHHHc----CCHHHHHHHHHH
Q 023425 148 YIEKAVDQ----LHPGALYLLGTV 167 (282)
Q Consensus 148 ~~~kAa~~----g~~~A~~~Lg~~ 167 (282)
+|+++.+. ++..+...+...
T Consensus 75 ~~~~al~~~~~~~~~~~~~~l~~~ 98 (115)
T 2kat_A 75 AWESGLAAAQSRGDQQVVKELQVF 98 (115)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHH
Confidence 88888764 445554444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.1e-08 Score=87.16 Aligned_cols=106 Identities=13% Similarity=-0.002 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHHHHHH----------------cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHH
Q 023425 65 IPLLKTAKENFELALE----------------ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQY 126 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~----------------~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~ 126 (282)
.+++++|+..|++|++ .+|.++.+++++|.+|... .++++|+.+|++|++ +.++.+++
T Consensus 236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~ 311 (370)
T 1ihg_A 236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM----SDWQGAVDSCLEALEIDPSNTKALY 311 (370)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHhCchhHHHHH
Confidence 3569999999999998 7788899999999999976 678999999999986 57899999
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 127 ELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 127 ~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
++|.+|.. ..++++|+.+|++|.+. +++.+...|+.++.. .++.+++.
T Consensus 312 ~lg~~~~~----~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~----~~~~~~a~ 361 (370)
T 1ihg_A 312 RRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK----IKAQKDKE 361 (370)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHHHHHHH
Confidence 99999999 45569999999999987 689999999999887 66666554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-07 Score=83.50 Aligned_cols=142 Identities=11% Similarity=-0.027 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLL 164 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~L 164 (282)
.+.+++.+|..+... .++++|+.+|++|++....... +.. ..+.+++...+. ..+++++
T Consensus 178 ~a~~~~~~g~~~~~~----g~~~~A~~~y~~Al~~~p~~~~------~~~----~~~~~~~~~~l~-------~~~~~nl 236 (338)
T 2if4_A 178 AADRRKMDGNSLFKE----EKLEEAMQQYEMAIAYMGDDFM------FQL----YGKYQDMALAVK-------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHHTCSS----SCCHHHHHHHHHHHHHSCHHHH------HTC----CHHHHHHHHHHH-------THHHHHH
T ss_pred HHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHhccchh------hhh----cccHHHHHHHHH-------HHHHHHH
Confidence 455666777776654 3457777777777755433321 111 111133332221 2488999
Q ss_pred HHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc-
Q 023425 165 GTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN- 235 (282)
Q Consensus 165 g~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~- 235 (282)
|.+|.. .+++++|+.+|++|++. .++.+++++|.+|.. .+++++|+.+|+++.+ .++.+++.+
T Consensus 237 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 237 AACLIK----LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE----LGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHT----TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHTTC----------------
T ss_pred HHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999999 99999999999999875 579999999999999 8999999999999975 356666644
Q ss_pred --cCCCHHHHHHHHHHHHHhcc
Q 023425 236 --LMNPVEKAKEQFEVAAQAGC 255 (282)
Q Consensus 236 --~~~~~~~A~~~~~~Aa~~g~ 255 (282)
..+..+++..+|.++.....
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCC
Confidence 45567888889988876653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.7e-07 Score=81.24 Aligned_cols=181 Identities=8% Similarity=-0.080 Sum_probs=131.5
Q ss_pred ccchHHHHHHHHHHhhhhhH----------------HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH------
Q 023425 30 HSRNKKAMELIAKGWSALKE----------------VDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTH------ 87 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~------ 87 (282)
.+++++|++.|.+.++.... .........+..+...+++++|..+|+++++..+..+.
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 45689999999887653221 01112233344444567799999999999875443333
Q ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh----C----CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----
Q 023425 88 ARYWLSKLHLKYHVPGACKAMGAALLVDAAN----M----GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---- 155 (282)
Q Consensus 88 a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~----~----g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---- 155 (282)
....+|.++.. +.++++|+.+++++.+ . .....+.+||.+|.. ..++++|+.+++++...
T Consensus 97 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 97 LKTLIEKFEQV----PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ----KKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp HHHHHHHHCSC----CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhc
Confidence 23445666553 3678999999999864 2 236789999999999 55569999999998763
Q ss_pred ----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC-----HHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 023425 156 ----LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH-----AGAAIAYGSLLLRGVQVPECLTKLNAKRV 222 (282)
Q Consensus 156 ----g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~-----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 222 (282)
..+.++..+|.+|.. .+|+++|..+|++|... .+ ......+|.++.. .+++..|..+|.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE----DKDYKTAFSYFF 240 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS----SSCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH----HHhHHHHHHHHH
Confidence 236789999999999 99999999999998653 22 2346677888777 899999999998
Q ss_pred HHHH
Q 023425 223 SAAK 226 (282)
Q Consensus 223 ~a~~ 226 (282)
.+..
T Consensus 241 ~a~~ 244 (434)
T 4b4t_Q 241 ESFE 244 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.65 E-value=5.7e-08 Score=88.15 Aligned_cols=156 Identities=11% Similarity=-0.037 Sum_probs=44.3
Q ss_pred hhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc
Q 023425 19 LQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLK 98 (282)
Q Consensus 19 ~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~ 98 (282)
+++.........+++++|++.|.+.- +...+...+......+.+++|+.+++.+.+. .+++.....|+.+|..
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika~------D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~-~~~~~i~~~Li~~Y~K 106 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CccchhHHHHHHHHHH
Confidence 33344444444677777777775531 1223333344445567788888888877753 3446667777777775
Q ss_pred CCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCH
Q 023425 99 YHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDI 178 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~ 178 (282)
. .+..++..+++. .+..++..+|..+.+.+.. ++|..+|.++ +.+..|+.++.. .+++
T Consensus 107 l----g~l~e~e~f~~~----pn~~a~~~IGd~~~~~g~y----eeA~~~Y~~a------~n~~~LA~~L~~----Lg~y 164 (449)
T 1b89_A 107 T----NRLAELEEFING----PNNAHIQQVGDRCYDEKMY----DAAKLLYNNV------SNFGRLASTLVH----LGEY 164 (449)
T ss_dssp ------CHHHHTTTTTC----C----------------CT----TTHHHHHHHT------TCHHHHHHHHHT----TTCH
T ss_pred h----CCHHHHHHHHcC----CcHHHHHHHHHHHHHcCCH----HHHHHHHHHh------hhHHHHHHHHHH----hccH
Confidence 4 455666666642 4456888888887774444 8888888876 467778888888 7888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 023425 179 ASALWCFHRASEKGHAGAAIAYGSLLLR 206 (282)
Q Consensus 179 ~~A~~~~~~A~~~g~~~a~~~Lg~~y~~ 206 (282)
+.|++.|++| +++.++-.+...+..
T Consensus 165 q~AVea~~KA---~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 165 QAAVDGARKA---NSTRTWKEVCFACVD 189 (449)
T ss_dssp HHHHHHHHHH---TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCchhHHHHHHHHHH
Confidence 8888888888 466555444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=9.7e-07 Score=83.25 Aligned_cols=173 Identities=9% Similarity=-0.069 Sum_probs=127.1
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhh----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPL----------LKTAKENFELALEADNSNTHARYWLSKLHLKY 99 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~ 99 (282)
....++|++++.+++...++......+. +......++ +++++.++.++++.+|.+..+|++-+.++...
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R-~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCR-REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHH-HHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3456788888888887555443332222 111111222 88999999999999999999999999888865
Q ss_pred CCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC----
Q 023425 100 HVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTG---- 171 (282)
Q Consensus 100 ~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g---- 171 (282)
+ ..++++++.++.++++ +.+..|+..-+.++...+ ..++++++++.++++. .+..|++..|.++..-
T Consensus 121 ~--~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~---~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 121 P--EPNWARELELCARFLEADERNFHCWDYRRFVAAQAA---VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp S--SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC---CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred c--cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 2 1267899999999985 468889999888877643 1458899999999887 6899999999887651
Q ss_pred ------CCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC
Q 023425 172 ------DCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGV 208 (282)
Q Consensus 172 ------~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~ 208 (282)
....+.++++++++.+|+.. ++..+++.++.++..+.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 11236688999999999764 67889999999887753
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=6.7e-08 Score=75.54 Aligned_cols=88 Identities=19% Similarity=0.086 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCc------CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC-CCC
Q 023425 106 KAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYV------QSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTG-DCV 174 (282)
Q Consensus 106 ~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~------~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g-~g~ 174 (282)
+++|+..|++|+ +++++++++++|.++...++.. +.+++|+..|++|++. .+++|+++||.+|..- .-+
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 589999999997 5689999999999988643321 2357999999999988 6899999999999861 000
Q ss_pred ------ccCHHHHHHHHHHHHHcCC
Q 023425 175 ------KKDIASALWCFHRASEKGH 193 (282)
Q Consensus 175 ------~~d~~~A~~~~~~A~~~g~ 193 (282)
.+++++|+.+|++|++...
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cchhhhhccHHHHHHHHHHHHHhCC
Confidence 1489999999999988754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-08 Score=92.56 Aligned_cols=153 Identities=12% Similarity=0.007 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFY 147 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~ 147 (282)
+++|..++++. ++|.+|..||..+... .+.++|+..|.++ .++.++..++..+..-+ ++++|+.
T Consensus 19 ld~A~~fae~~-----~~~~vWs~La~A~l~~----g~~~eAIdsfika---~D~~~y~~V~~~ae~~g----~~EeAi~ 82 (449)
T 1b89_A 19 LDRAYEFAERC-----NEPAVWSQLAKAQLQK----GMVKEAIDSYIKA---DDPSSYMEVVQAANTSG----NWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC-----CChHHHHHHHHHHHHc----CCHHHHHHHHHcC---CCHHHHHHHHHHHHhCC----CHHHHHH
Confidence 45555555555 2344555555555544 2235555555442 34445555554444422 2255555
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 148 YIEKAVDQ-LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 148 ~~~kAa~~-g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
|++.+.+. .++.....|+.+|.. .+++.++..+++. ++..++..+|..+.. .+.++.|..+|.++
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~K----lg~l~e~e~f~~~----pn~~a~~~IGd~~~~----~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAK----TNRLAELEEFING----PNNAHIQQVGDRCYD----EKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTTC----C--------------------CTTTHHHHHHHT--
T ss_pred HHHHHHHhCccchhHHHHHHHHHH----hCCHHHHHHHHcC----CcHHHHHHHHHHHHH----cCCHHHHHHHHHHh--
Confidence 55544443 223334445555544 4555555544432 223355555555554 45555555555544
Q ss_pred HHchhch--hccCCCHHHHHHHHHHH
Q 023425 227 KARANLE--SNLMNPVEKAKEQFEVA 250 (282)
Q Consensus 227 ~a~~~lg--~~~~~~~~~A~~~~~~A 250 (282)
..+..++ ....+++++|++.|++|
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 2222333 23444555555555555
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-07 Score=68.81 Aligned_cols=96 Identities=10% Similarity=-0.018 Sum_probs=74.7
Q ss_pred ccchHHHHHHHHHHhhhh--hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 30 HSRNKKAMELIAKGWSAL--KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
.+++++|+++|.+++... .+......+..+..+...+++++|+.+|+++++.+|+++.+++++|.++... .+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL----GRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc----CCHH
Confidence 467889999999998852 3444566666666666778899999999999999999999999999999976 5779
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHH
Q 023425 108 MGAALLVDAAN--MGDPDAQYELG 129 (282)
Q Consensus 108 ~A~~~~~~Aa~--~g~~~A~~~Lg 129 (282)
+|+.+|+++++ +++++......
T Consensus 79 ~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHH
Confidence 99999999984 56766554333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-06 Score=80.73 Aligned_cols=133 Identities=8% Similarity=-0.122 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCC------CcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCc
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVP------GACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~------~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
.++|++++.++++.+|.+..+|+.-+.++...+.. ...+++++.++.++++ +.+..+++.-+-++...+ .
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~--~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP--E 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS--S
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--c
Confidence 47899999999999999999999999998754211 0117999999999984 679999999999888743 1
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCcc-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 140 QSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKK-DIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
.++++++.++.++++. .+..|+...+.++.. .+ .++++++++.++++. .+..|+++.|.++..
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~----l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHH----cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 2569999999999997 689999999999887 55 789999999999886 579999999999876
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.53 E-value=6.7e-07 Score=61.79 Aligned_cols=76 Identities=26% Similarity=0.336 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAA 197 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~ 197 (282)
+.+++.+|.++.. ..++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. +++.++
T Consensus 9 ~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCHHHH
Confidence 3445555555554 22335555555555543 345555555555555 55555555555555443 345555
Q ss_pred HHHHHHHH
Q 023425 198 IAYGSLLL 205 (282)
Q Consensus 198 ~~Lg~~y~ 205 (282)
.++|.++.
T Consensus 81 ~~l~~~~~ 88 (91)
T 1na3_A 81 QNLGNAKQ 88 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-06 Score=63.00 Aligned_cols=89 Identities=16% Similarity=0.064 Sum_probs=72.1
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 108 MGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 108 ~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
.|+..|+++++ +.++.+++++|.+|.. ..++++|+.+|+++++. .++.+++.||.+|.. .+++++|+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG----QGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----cCCHHHHHH
Confidence 57788999874 5789999999999988 44559999999999886 678999999999998 899999999
Q ss_pred HHHHHHHc----CCHHHHHHHHHHH
Q 023425 184 CFHRASEK----GHAGAAIAYGSLL 204 (282)
Q Consensus 184 ~~~~A~~~----g~~~a~~~Lg~~y 204 (282)
+|+++++. ++..+...+...+
T Consensus 75 ~~~~al~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 75 AWESGLAAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHH
Confidence 99998764 4555555554444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-06 Score=62.46 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---- 155 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---- 155 (282)
+|+++.+++.||.+|... .++++|+.+|+++++ +.++.++++||.+|... .++++|+.+|+++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKH----DNASRALALFEELVETDPDYVGTYYHLGKLYERL----DRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhhhcC
Confidence 456666666666666544 355666666666653 34556666666666552 3336666666665543
Q ss_pred CCHHHHHHHHHHH
Q 023425 156 LHPGALYLLGTVY 168 (282)
Q Consensus 156 g~~~A~~~Lg~~y 168 (282)
++..+...+..++
T Consensus 75 ~~~~~~~~l~~~l 87 (100)
T 3ma5_A 75 GTQKDLSELQDAK 87 (100)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHH
Confidence 3444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-06 Score=62.67 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=67.3
Q ss_pred hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----
Q 023425 118 NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK---- 191 (282)
Q Consensus 118 ~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---- 191 (282)
+++++.+++.||.+|.. ..++++|+.+|+++++. .++.+++.||.+|.. .+++++|+.+|+++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLK----HDNASRALALFEELVETDPDYVGTYYHLGKLYER----LDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhhhcC
Confidence 46789999999999998 44559999999999987 689999999999999 89999999999999763
Q ss_pred CCHHHHHHHHHHHHc
Q 023425 192 GHAGAAIAYGSLLLR 206 (282)
Q Consensus 192 g~~~a~~~Lg~~y~~ 206 (282)
++..+...+..++..
T Consensus 75 ~~~~~~~~l~~~l~~ 89 (100)
T 3ma5_A 75 GTQKDLSELQDAKLK 89 (100)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 667777777766654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.5e-05 Score=68.44 Aligned_cols=191 Identities=8% Similarity=-0.152 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC-CCc-----CHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCc
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHV-PGA-----CKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYV 139 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~-~~~-----~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~ 139 (282)
.++|+.++.+++..+|.+..+++.-+.++...+. ..+ .+++++.++..++. +.+..+++.-+.++...+.
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~-- 123 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE-- 123 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS--
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc--
Confidence 4689999999999999999999999998874321 111 15789999999984 6799999999988876432
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC-----
Q 023425 140 QSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKD-IASALWCFHRASEK--GHAGAAIAYGSLLLRGVQ----- 209 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d-~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g----- 209 (282)
.++++++.++.++++. .+..|+...+.+... .+. +++++.++.++++. .+..|+.+.+.++..-..
T Consensus 124 ~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~----l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 124 PNWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 2579999999999987 689999999999877 455 68999999999886 579999999988875311
Q ss_pred -----CcccHHHHHHHHHHHHH------HHchhch-hc--cC----------CCHHHHHHHHHHHHHhccHHHHHHHHH
Q 023425 210 -----VPECLTKLNAKRVSAAK------KARANLE-SN--LM----------NPVEKAKEQFEVAAQAGCNLGLRWLQR 264 (282)
Q Consensus 210 -----~~~~~~~A~~~~~~a~~------~a~~~lg-~~--~~----------~~~~~A~~~~~~Aa~~g~~~a~~~l~~ 264 (282)
....+++++.++.+++. .+|+.+. .+ .. +-+++++.++.+..+.-+......+..
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 12557889999999987 4675443 21 11 247899999999998876555444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-06 Score=60.28 Aligned_cols=78 Identities=21% Similarity=0.163 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPG 159 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~ 159 (282)
.++.+++.+|.++... .++++|+.+|+++++ +.++.+++++|.++.. ..++++|+.+|+++++. +++.
T Consensus 7 ~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~ 78 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCHH
Confidence 3566777777777654 466777777777764 4567777777777776 33447777777777765 5677
Q ss_pred HHHHHHHHHh
Q 023425 160 ALYLLGTVYL 169 (282)
Q Consensus 160 A~~~Lg~~y~ 169 (282)
++.++|.++.
T Consensus 79 ~~~~l~~~~~ 88 (91)
T 1na3_A 79 AKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777664
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-07 Score=67.72 Aligned_cols=61 Identities=8% Similarity=-0.073 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 87 HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 87 ~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.+++.+|.++... +++++|+.+|+++++ +.++.+++++|.+|.. ..++++|+.+|+++++.
T Consensus 5 ~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQ----GLYREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHh
Confidence 3444444444432 334444444444432 2344444444444444 22224444444444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-06 Score=60.66 Aligned_cols=78 Identities=9% Similarity=-0.035 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--C---
Q 023425 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--H--- 193 (282)
Q Consensus 121 ~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~--- 193 (282)
++++++.+|.++.. ..++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.. +
T Consensus 3 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK----QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAIQMCQQGLRYTSTAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSCSSTTSH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCccHH
Confidence 46789999999998 45559999999999987 689999999999999 899999999999998863 4
Q ss_pred ---HHHHHHHHHHHHc
Q 023425 194 ---AGAAIAYGSLLLR 206 (282)
Q Consensus 194 ---~~a~~~Lg~~y~~ 206 (282)
+.+++.+|.++..
T Consensus 75 ~~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGA 90 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788899988875
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.36 E-value=9e-06 Score=71.96 Aligned_cols=139 Identities=14% Similarity=-0.041 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC---CCCCcCHHHHH
Q 023425 34 KKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKY---HVPGACKAMGA 110 (282)
Q Consensus 34 ~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~---~~~~~~~~~A~ 110 (282)
-.|.+.|.+|...+.. +...++.+|+.+|++|++.+|+++.++-.++.+|... +........+.
T Consensus 194 ~~Aydl~Lra~~~l~~-------------~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l 260 (372)
T 3ly7_A 194 GALLTNFYQAHDYLLH-------------GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAAL 260 (372)
T ss_dssp GGGHHHHHHHHHHHHH-------------CSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHH
Confidence 4566766666442221 2356689999999999999999999999988887522 11111122222
Q ss_pred H-HHHHHH----hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 023425 111 A-LLVDAA----NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL-HPGALYLLGTVYLTGDCVKKDIASALWC 184 (282)
Q Consensus 111 ~-~~~~Aa----~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~ 184 (282)
. -++.+. .+.++.++..++..+.. ..++++|+.++++|...+ +..++..+|.++.. .|++++|++.
T Consensus 261 ~~a~~a~~a~~~~~~~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~----~G~~~eA~e~ 332 (372)
T 3ly7_A 261 NTEIDNIVTLPELNNLSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM----KGMNREAADA 332 (372)
T ss_dssp HHHHHHHHTCGGGTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 2 222211 25678888888887776 345599999999999884 56667788999988 8999999999
Q ss_pred HHHHHHcCC
Q 023425 185 FHRASEKGH 193 (282)
Q Consensus 185 ~~~A~~~g~ 193 (282)
|.+|.....
T Consensus 333 ~~~AlrL~P 341 (372)
T 3ly7_A 333 YLTAFNLRP 341 (372)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHhcCC
Confidence 999988754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00014 Score=64.15 Aligned_cols=171 Identities=10% Similarity=-0.082 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcC-CCCcCCHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVE-NDYVQSDQQ 144 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g-~~~~~d~~~ 144 (282)
.++|++++.++++.+|.+..+++.-+.++...+ .+.++++.++.+++. +.+..+++.-+.++... + .++++
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~---~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~---~~~~~ 143 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLN---KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP---QDPVS 143 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---SCCHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC---CChHH
Confidence 468999999999999999999999999998653 368999999999985 57999999999888764 2 13489
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH--------HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcc
Q 023425 145 AFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIA--------SALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPE 212 (282)
Q Consensus 145 A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~--------~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~ 212 (282)
++.++.++++. .+..|+...+.++.. .+.++ ++++++.++++. .+..|+.+.+.++..-.+...
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~----l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSH----FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHH----HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccccc
Confidence 99999999987 689999998888765 33344 999999999886 579999999999876432111
Q ss_pred cHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhh
Q 023425 213 CLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAG--CNLGLRWLQRIEEEEKR 271 (282)
Q Consensus 213 ~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g--~~~a~~~l~~l~~~~~~ 271 (282)
+.. .+++++.++.+++... +..+..++..+.....+
T Consensus 220 ~~~-----------------------~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSR-----------------------SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHH-----------------------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred chH-----------------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 100 1256777777777654 67777777776665443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-05 Score=68.27 Aligned_cols=174 Identities=7% Similarity=-0.122 Sum_probs=128.9
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIP-LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
+..++|++++.+.+...+.......+.. ......+ ++++++.++.+++..+|.+..+++.-+.++....+ .+.+++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~-~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~--~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRF-SLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP--QDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--SCCHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC--CChHHH
Confidence 3467899999998876654443333221 1111123 69999999999999999999999999999886511 245899
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCC----cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC---CccCH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDY----VQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDC---VKKDI 178 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~----~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g---~~~d~ 178 (282)
+.++.++++ +.+..|++.-+.++..-+.. .....++++++.++++. .+..|++..+.++..-.. ....+
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 999999985 46889999888776543222 11235999999999987 699999999999877321 12237
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHcC
Q 023425 179 ASALWCFHRASEK--GHAGAAIAYGSLLLRG 207 (282)
Q Consensus 179 ~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g 207 (282)
+++++++++++.. ++..+++.+..++...
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 8999999999865 6899998888777754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.06 E-value=9.5e-05 Score=64.05 Aligned_cols=178 Identities=11% Similarity=0.043 Sum_probs=113.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhcCCCCcCCHHHHH
Q 023425 71 AKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM----GDPDAQYELGCRLRVENDYVQSDQQAF 146 (282)
Q Consensus 71 A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~~g~~~~~d~~~A~ 146 (282)
|+..|++.++..+..+.+.+.+|.++... +++++|++|+.+.++. ++.++...++.++...++. +.|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~----g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~----d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAIL----GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV----STAS 156 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH----HHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH----HHHH
Confidence 67778877755556677778888888754 5778888888888765 4678888888888885555 8888
Q ss_pred HHHHHHHHcCC------HHHHHHHHHH--Hhc-CCCCccCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCCCccc
Q 023425 147 YYIEKAVDQLH------PGALYLLGTV--YLT-GDCVKKDIASALWCFHRASEKGH----AGAAIAYGSLLLRGVQVPEC 213 (282)
Q Consensus 147 ~~~~kAa~~g~------~~A~~~Lg~~--y~~-g~g~~~d~~~A~~~~~~A~~~g~----~~a~~~Lg~~y~~g~g~~~~ 213 (282)
+.+++..+... -.....|+.. .+. | .+++..|+..|++.++... +...++ +++. .++
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g---~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~----~g~ 226 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN---KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ----QRN 226 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT---CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH----HTC
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH----cCC
Confidence 88887766543 3445555533 222 1 2468888888888766543 223333 6666 788
Q ss_pred HHHHHHHHHHHHH----------------HHchhc---hhccCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH
Q 023425 214 LTKLNAKRVSAAK----------------KARANL---ESNLMNPVEKAKEQFEVAAQAG-CNLGLRWLQRIEEEE 269 (282)
Q Consensus 214 ~~~A~~~~~~a~~----------------~a~~~l---g~~~~~~~~~A~~~~~~Aa~~g-~~~a~~~l~~l~~~~ 269 (282)
+++|...++...+ .+..|+ +.. .++ .|.++++++.+.. +.+....+.......
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~-lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~F 299 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM-QGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKF 299 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH-TTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH-hCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 8888777764322 122233 222 233 6788888888866 333333344444333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4.1e-05 Score=55.14 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK- 191 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~- 191 (282)
+.-++.||..++. .+++..|+.||++|.+. ..+..+..||.+|.. .+++++|+.++++|+..
T Consensus 5 a~dc~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcC
Confidence 4556666666666 44446666666666653 235666777777777 77777787777777654
Q ss_pred -CCHHHHHHHH
Q 023425 192 -GHAGAAIAYG 201 (282)
Q Consensus 192 -g~~~a~~~Lg 201 (282)
.++.+..+++
T Consensus 77 P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 PEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHhhHH
Confidence 4666666666
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00014 Score=62.11 Aligned_cols=110 Identities=10% Similarity=0.011 Sum_probs=83.4
Q ss_pred HcCCCCHHHHHHHHHHHhcC-----C--CCCcCHHHHHHHHHHHHhC--C--CHHHHHHHHHHHhcCCCC-cCCHHHHHH
Q 023425 80 EADNSNTHARYWLSKLHLKY-----H--VPGACKAMGAALLVDAANM--G--DPDAQYELGCRLRVENDY-VQSDQQAFY 147 (282)
Q Consensus 80 ~~~~g~~~a~~~Lg~~~~~~-----~--~~~~~~~~A~~~~~~Aa~~--g--~~~A~~~Lg~~y~~g~~~-~~d~~~A~~ 147 (282)
+.+|+++++++++|.....- + +.-...+.|...+++|++. . +..|+..||.+|..--.. -.|.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 35788999999999986531 1 2224468899999999865 3 466999999998772111 135599999
Q ss_pred HHHHHHHc--C-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 148 YIEKAVDQ--L-HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 148 ~~~kAa~~--g-~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
+|++|++. + ++.+.+..|..+... .+|.+.|..++++|+...
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~---~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIP---LNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTT---TTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHh---cCCHHHHHHHHHHHHcCC
Confidence 99999987 3 499999999988761 388999999999998754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00021 Score=61.84 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=70.0
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 023425 109 GAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LHPGALYLLGTVYLTGDCVKKDIASAL 182 (282)
Q Consensus 109 A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~g~g~~~d~~~A~ 182 (282)
|+..|++.++. ....+.+.+|.++.. ..++++|+.|+.+.+.. ++.++...++.+|.. .++++.|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~----~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~----~~r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAI----LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL----NNNVSTAS 156 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH----TTCHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH----CCCHHHHH
Confidence 44555555532 345555666666666 44446666666666554 356666666666666 66666666
Q ss_pred HHHHHHHHcCC------HHHHHHHHHH--HHc-CCCCcccHHHHHHHHHHHHHH--------HchhchhccCCCHHHHHH
Q 023425 183 WCFHRASEKGH------AGAAIAYGSL--LLR-GVQVPECLTKLNAKRVSAAKK--------ARANLESNLMNPVEKAKE 245 (282)
Q Consensus 183 ~~~~~A~~~g~------~~a~~~Lg~~--y~~-g~g~~~~~~~A~~~~~~a~~~--------a~~~lg~~~~~~~~~A~~ 245 (282)
+.+++..+... ......|+.. ... | ..++..|+..|+...+. ..++ ..+..+++++|..
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g---~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN---KETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT---CSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence 66666544432 3334444422 221 1 12455666666665441 1112 2345566666666
Q ss_pred HHHHH
Q 023425 246 QFEVA 250 (282)
Q Consensus 246 ~~~~A 250 (282)
.+++.
T Consensus 233 ~L~~l 237 (310)
T 3mv2_B 233 IVELL 237 (310)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00015 Score=56.04 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCCcC
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG----DPDAQYELGCRLRVENDYVQ 140 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~g~~~~~ 140 (282)
+..+..+.+-|.+.++.++.++++.|++|..+.... .+.+.++++..++..++.+ +.+++|+||..+.. .+
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~-~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k----l~ 85 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSK-YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LK 85 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----TS
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH----cc
Confidence 445677777777777767777888888888777642 2245677777777777654 35677777777666 45
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHH
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLL 164 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~L 164 (282)
|+++|+.|++++.+. ++..|....
T Consensus 86 ~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 86 EYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 557777777777665 455555443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.3e-05 Score=69.53 Aligned_cols=112 Identities=12% Similarity=0.015 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHH-----cCCCCH---HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-------CCCH---HHHHH
Q 023425 66 PLLKTAKENFELALE-----ADNSNT---HARYWLSKLHLKYHVPGACKAMGAALLVDAAN-------MGDP---DAQYE 127 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~-----~~~g~~---~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-------~g~~---~A~~~ 127 (282)
+++++|+..|+++++ +.+.|| .++.+||.+|... .++++|+.+++++++ ..+| .++++
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~----g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL----QAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 458899999988887 455565 4677788888765 577888888888864 2233 46777
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CCH---HHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVDQ-------LHP---GALYLLGTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-------g~~---~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
||.+|...+.+ ++|..+|++|.+. +|| +....|+.++.. .+.+++|...|+++-
T Consensus 399 La~~~~~~G~~----~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e----~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHI----EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME----LRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCH----HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCH----HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 88888875555 8888888887763 343 333566777766 677777777777663
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00015 Score=52.07 Aligned_cols=73 Identities=15% Similarity=0.026 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM---------GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~---------g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
++.-++.||..+... +++..|+.||++|.+. ..++.+..||.+|...+. +++|+.+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~----~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~----~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTE----ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD----LDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc----cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC----HHHHHHHHHHHHhc
Confidence 567789999998866 6889999999999852 247788999999998444 49999999999876
Q ss_pred --CCHHHHHHHH
Q 023425 156 --LHPGALYLLG 165 (282)
Q Consensus 156 --g~~~A~~~Lg 165 (282)
.++.+..+++
T Consensus 76 ~P~~~~~~~n~~ 87 (104)
T 2v5f_A 76 DPEHQRANGNLK 87 (104)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHhhHH
Confidence 6888888887
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.83 E-value=4e-05 Score=53.76 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTH-ARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYE 127 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~-a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~ 127 (282)
+++++|+..|+++++.+|.++. +++.+|.+|... .++++|+.+|+++++ ++++.++++
T Consensus 14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL----GDWQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4599999999999999999999 999999999865 577999999999985 567777643
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0003 Score=60.04 Aligned_cols=93 Identities=14% Similarity=0.032 Sum_probs=78.5
Q ss_pred cCCCchhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHhcCC-CCCcCHHHHHHHHHHHHh--CC-CHHHHHHHHHHHh
Q 023425 60 NDRRLIPLLKTAKENFELALEADNS--NTHARYWLSKLHLKYH-VPGACKAMGAALLVDAAN--MG-DPDAQYELGCRLR 133 (282)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~a~~~~~g--~~~a~~~Lg~~~~~~~-~~~~~~~~A~~~~~~Aa~--~g-~~~A~~~Lg~~y~ 133 (282)
.+.+......+|...+++|++++|. ++.++..||.+|..-. ....+.++|.++|++|++ ++ ++++.+.+|..+.
T Consensus 171 gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 171 LGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC 250 (301)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 4577889999999999999999999 7789999999999742 123688999999999985 44 5999999999987
Q ss_pred cCCCCcCCHHHHHHHHHHHHHc
Q 023425 134 VENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 134 ~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
.. ..|.+.|..++++|...
T Consensus 251 ~~---~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 251 IP---LNNRAGFDEALDRALAI 269 (301)
T ss_dssp TT---TTCHHHHHHHHHHHHHC
T ss_pred Hh---cCCHHHHHHHHHHHHcC
Confidence 62 14569999999999986
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0004 Score=64.14 Aligned_cols=110 Identities=11% Similarity=-0.053 Sum_probs=85.1
Q ss_pred cCHHHHHHHHHHHHh-------CCC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CC---HHHHHH
Q 023425 104 ACKAMGAALLVDAAN-------MGD---PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-------LH---PGALYL 163 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~-------~g~---~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-------g~---~~A~~~ 163 (282)
.++++|+..|+++.+ ..+ ..++.+||.+|...+.. ++|+.+++++.+. .| ..++.+
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~----~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAY----EEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 478999999999975 124 46889999999985544 9999999999874 34 467789
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 164 LGTVYLTGDCVKKDIASALWCFHRASEK-------GH---AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 164 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------g~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
||.+|.. .+++++|+.+|++|++. ++ .+...+|+.++.. .+.+..|...|.++-
T Consensus 399 La~~~~~----~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e----~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWH----AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME----LRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHH----CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 9999999 89999999999999762 34 3446778888876 666776666665553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00027 Score=49.36 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHH-HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHH
Q 023425 126 YELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPG-ALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAA 197 (282)
Q Consensus 126 ~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~-A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~ 197 (282)
+.+|..+.. ..++++|+.+|+++++. .++. +++.+|.+|.. .+++++|+.+|+++++.. ++.++
T Consensus 4 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 445666665 34447777777777665 4566 77777777777 677777777777776643 34444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.003 Score=60.59 Aligned_cols=173 Identities=7% Similarity=-0.040 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHH-HHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGA-ALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~-~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
.+.....|++|+...|.+++.|+.++..+...+.. ++|. ..|++|+. +.+..-+..++.+....+ +.++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~----~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~----~~e~ 396 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTD----STVITKYLKLGQQCIPNSAVLAFSLSEQYELNT----KIPE 396 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCC----TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcH----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC----CHHH
Confidence 34567889999999999999999999998865433 6786 99999986 456666777888877744 4599
Q ss_pred HHHHHHHHHHcC------------------------CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-C--CHHHH
Q 023425 145 AFYYIEKAVDQL------------------------HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-G--HAGAA 197 (282)
Q Consensus 145 A~~~~~kAa~~g------------------------~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-g--~~~a~ 197 (282)
|...|+++.+.. .+..+.....+... .++.+.|...|.+|.+. + ....+
T Consensus 397 aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR----~~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 397 IETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR----IQGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCChHHH
Confidence 999999998741 12234444444444 57789999999999987 3 34455
Q ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHH----ch--hch--hccCCCHHHHHHHHHHHHHhcc
Q 023425 198 IAYGSLLLRGVQVPECLTKLNAKRVSAAKKA----RA--NLE--SNLMNPVEKAKEQFEVAAQAGC 255 (282)
Q Consensus 198 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a----~~--~lg--~~~~~~~~~A~~~~~~Aa~~g~ 255 (282)
...+.+-.. ..++.+.|...|+++++.- .+ ..+ ....++.+.|+.+|++|+....
T Consensus 473 i~~A~lE~~---~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 473 LENAYIEYH---ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHT---TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHH---hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 555555544 1356889999999998831 11 111 1245789999999999998765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00021 Score=50.39 Aligned_cols=69 Identities=13% Similarity=-0.088 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 82 DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 82 ~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
+|.+|+.++.+|.++....+. ...++|..++++|+ ++.++.|.+.||..++. ..++++|+.+|++..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~-~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQ-AMTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTT-CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence 345555555555555322110 12355555555554 34455555555555555 22335555555555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00035 Score=49.29 Aligned_cols=71 Identities=10% Similarity=0.026 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCH
Q 023425 119 MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHA 194 (282)
Q Consensus 119 ~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~ 194 (282)
+.+++.+..+|.++....+ ....++|..++++|... .++.|.+.||..++. .+++++|+.+|++.++....
T Consensus 3 p~~~~~~~~~a~al~~~~~-~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHK-QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTT-TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence 5678889999987754222 12248999999999887 789999999999998 89999999999999887654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00053 Score=52.87 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=72.2
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCCccC
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL----HPGALYLLGTVYLTGDCVKKD 177 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~g~g~~~d 177 (282)
.+...+.+.|.+..+ ..++++.|++|.++.... .+.+.++++..++...+.. +.+++|+||..|.. .+|
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~-~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k----l~~ 86 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSK-YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LKE 86 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----TSC
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH----ccC
Confidence 345667777888776 447899999999998833 2446689999999999886 46899999999988 899
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHH
Q 023425 178 IASALWCFHRASEK--GHAGAAIAY 200 (282)
Q Consensus 178 ~~~A~~~~~~A~~~--g~~~a~~~L 200 (282)
+++|+.+++++++. ++..|..-.
T Consensus 87 Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999998764 556665443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00096 Score=58.99 Aligned_cols=137 Identities=9% Similarity=-0.101 Sum_probs=91.3
Q ss_pred cCCCCHHHHHH--HHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhc--CC-CCcCCHHHHHH-HHHHH
Q 023425 81 ADNSNTHARYW--LSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRV--EN-DYVQSDQQAFY-YIEKA 152 (282)
Q Consensus 81 ~~~g~~~a~~~--Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~--g~-~~~~d~~~A~~-~~~kA 152 (282)
..|.+++|+-. -|.-+... ..+.+..+|+.+|++|+ +++++.|+..++.+|.. +. ....+...++. -+..+
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~-~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLH-GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 35666666543 34433322 23467799999999997 57899999988877742 11 11111112222 22221
Q ss_pred HH----cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 153 VD----QLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG-HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 153 a~----~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.. ..++.++..++.++.. .+++++|+.++++|+..+ +..++..+|.++.. .+++++|...|++|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~----~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM----KGMNREAADAYLTAFN 338 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHh
Confidence 11 2678888889888877 799999999999998875 45567788999887 7788777777777665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0004 Score=63.14 Aligned_cols=81 Identities=15% Similarity=-0.036 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHH-----cCCCCHH---HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-----CC--CH---HHHHH
Q 023425 66 PLLKTAKENFELALE-----ADNSNTH---ARYWLSKLHLKYHVPGACKAMGAALLVDAAN-----MG--DP---DAQYE 127 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~-----~~~g~~~---a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-----~g--~~---~A~~~ 127 (282)
+++++|+..|+++++ +.|.||. ++.+||.+|... .++++|+.+++++++ .| +| .++++
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~----g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM----QDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 457888888888876 4455553 455666666654 456777777777653 12 32 34555
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 128 LGCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 128 Lg~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
||.+|...+.. ++|+.+|++|.+
T Consensus 388 La~~~~~qg~~----~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENK----AAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCH----HHHHHHHHHHHH
T ss_pred HHHHHHhccCH----HHHHHHHHHHHH
Confidence 56555554433 555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00083 Score=61.03 Aligned_cols=81 Identities=16% Similarity=0.048 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-----C--C---HHHHHH
Q 023425 140 QSDQQAFYYIEKAVDQ-------LH---PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-----G--H---AGAAIA 199 (282)
Q Consensus 140 ~d~~~A~~~~~kAa~~-------g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----g--~---~~a~~~ 199 (282)
.++++|+.+|+++.+. .| ...+.+||.+|.. .+++++|+.+++++++- | + ..++++
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 4679999999999873 24 4677899999999 89999999999999763 3 3 557999
Q ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHH
Q 023425 200 YGSLLLRGVQVPECLTKLNAKRVSAAKKA 228 (282)
Q Consensus 200 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a 228 (282)
||.+|.. .+++++|..+|++|.+.-
T Consensus 388 La~~~~~----qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 388 LGRLYMG----LENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHh----ccCHHHHHHHHHHHHHHH
Confidence 9999998 788888888887776543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0033 Score=60.37 Aligned_cols=205 Identities=8% Similarity=-0.086 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Q 023425 34 KKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAK-ENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAAL 112 (282)
Q Consensus 34 ~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~ 112 (282)
++....|.+++..+...... -+.+.......++.++|. ..|++|+...|.++.-+..++.+.... .+.+.|...
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~l-W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~----~~~e~aR~i 400 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEI-WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN----TKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHH-HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----CCHHHHHHH
Confidence 34455666666655432221 111111112224467886 999999999999888888888888865 356899999
Q ss_pred HHHHHhCC------------------------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-C--CHHHHHHHH
Q 023425 113 LVDAANMG------------------------DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-L--HPGALYLLG 165 (282)
Q Consensus 113 ~~~Aa~~g------------------------~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-g--~~~A~~~Lg 165 (282)
|+++++.. .+..+..+..+.... .+.+.|...|.+|.+. . ....+...+
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~----~~l~~AR~vf~~A~~~~~~~~~~lyi~~A 476 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI----QGLAASRKIFGKCRRLKKLVTPDIYLENA 476 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHHHHTGGGSCTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 99988631 122455555554443 3348999999999876 3 344555555
Q ss_pred HHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHch--hc-------h-
Q 023425 166 TVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARA--NL-------E- 233 (282)
Q Consensus 166 ~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~--~l-------g- 233 (282)
.+-.. ..++++.|...|+++++. .++.-+...+.+... .++.+.|..+|++|+...-. .. -
T Consensus 477 ~lE~~---~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~----~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 477 YIEYH---ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY----VNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549 (679)
T ss_dssp HHHHT---TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHH---hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55444 135689999999999885 455555556665555 57889999999998763220 00 0
Q ss_pred -hccCCCHHHHHHHHHHHHHhc
Q 023425 234 -SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 234 -~~~~~~~~~A~~~~~~Aa~~g 254 (282)
-..-|+.+.+...++++.+.-
T Consensus 550 fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 550 FESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 113445555666666666544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0047 Score=55.93 Aligned_cols=85 Identities=14% Similarity=0.067 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-----C--C---HHHHHHH
Q 023425 141 SDQQAFYYIEKAVDQ-------LH---PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-----G--H---AGAAIAY 200 (282)
Q Consensus 141 d~~~A~~~~~kAa~~-------g~---~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----g--~---~~a~~~L 200 (282)
++++|+..++++.+. .| ...+.+||.+|.. .+++++|+.+++++++. | + ...+++|
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 569999999999874 23 5678999999998 99999999999999763 2 3 5579999
Q ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHHHchhch
Q 023425 201 GSLLLRGVQVPECLTKLNAKRVSAAKKARANLE 233 (282)
Q Consensus 201 g~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg 233 (282)
|.+|.. .+++++|..+|++|.+.-...+|
T Consensus 378 a~~~~~----~g~~~eA~~~~~~Al~i~~~~lG 406 (429)
T 3qwp_A 378 GKLQLH----QGMFPQAMKNLRLAFDIMRVTHG 406 (429)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHh----cCCHHHHHHHHHHHHHHHHHhcC
Confidence 999998 78899888888777664333333
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0019 Score=58.52 Aligned_cols=80 Identities=9% Similarity=-0.023 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHH-----cCCCCH---HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-------CCCH---HHHHHH
Q 023425 67 LLKTAKENFELALE-----ADNSNT---HARYWLSKLHLKYHVPGACKAMGAALLVDAAN-------MGDP---DAQYEL 128 (282)
Q Consensus 67 ~~~~A~~~~~~a~~-----~~~g~~---~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-------~g~~---~A~~~L 128 (282)
++++|+..|+++++ +.+.|| ..+.+||.+|... .++++|+.+++++++ ..+| ..+++|
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~----g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL----GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 47888888888875 334444 3455566666533 355666666666653 1122 344555
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHH
Q 023425 129 GCRLRVENDYVQSDQQAFYYIEKAVD 154 (282)
Q Consensus 129 g~~y~~g~~~~~d~~~A~~~~~kAa~ 154 (282)
|.+|...+.. ++|+.+|++|.+
T Consensus 378 a~~~~~~g~~----~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGMF----PQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTCH----HHHHHHHHHHHH
T ss_pred HHHHHhcCCH----HHHHHHHHHHHH
Confidence 5555553333 555555555544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.4 Score=44.09 Aligned_cols=148 Identities=9% Similarity=-0.089 Sum_probs=76.6
Q ss_pred chhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhcCCC-----CCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhc
Q 023425 64 LIPLLKTAKENFELALEAD-NSNTHARYWLSKLHLKYHV-----PGACKAMGAALLVDAANMG---DPDAQYELGCRLRV 134 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~-~g~~~a~~~Lg~~~~~~~~-----~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~ 134 (282)
..+++++|+..|++..+.. +.+...+..|=..+..... ...+.+.|...|.+-.+.| +...+..|-..|..
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~ 117 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA 117 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 3455666666666665421 1234444444334433221 1123466666666665554 44555555555555
Q ss_pred CCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQL---HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG---HAGAAIAYGSLLLRGV 208 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~ 208 (282)
.+. .++|+.+|.+..+.| +...+..|=..|-. .++.++|.+.|+.-.+.| +...+..|-..|..
T Consensus 118 ~g~----~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~-- 187 (501)
T 4g26_A 118 KDD----PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR----KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD-- 187 (501)
T ss_dssp HTC----HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--
T ss_pred cCC----HHHHHHHHHHHHHcCCCCccceehHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh--
Confidence 333 366666666666554 44455555445544 566666666666666654 34445455444444
Q ss_pred CCcccHHHHHHHHHH
Q 023425 209 QVPECLTKLNAKRVS 223 (282)
Q Consensus 209 g~~~~~~~A~~~~~~ 223 (282)
.++.++|...+++
T Consensus 188 --~g~~d~A~~ll~~ 200 (501)
T 4g26_A 188 --TKNADKVYKTLQR 200 (501)
T ss_dssp --TTCHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHH
Confidence 4455555554444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.072 Score=39.44 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCH----HHHHHHHHHHhcCCCCcCCHH
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDP----DAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~----~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+....+-|.++...++..+++.|+++..+.... .+.+..+++..++..++.++| +..|.||.-+.. ..++.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~-~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk----lg~Y~ 91 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR-YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH----TTCHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH----hhhHH
Confidence 556666677776656667777777777776542 224556677777776665533 456666666655 34446
Q ss_pred HHHHHHHHHHHc--CCHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALY 162 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~ 162 (282)
+|+.+.....+. ++.+|..
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 666666666554 4444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.52 Score=43.30 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=117.6
Q ss_pred hhhcccchHHHHHHHHHHhhhhhHHHH-----HHHHHhhc----CCCchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Q 023425 26 KRWLHSRNKKAMELIAKGWSALKEVDR-----VIDYCELN----DRRLIPLLKTAKENFELALEAD-NSNTHARYWLSKL 95 (282)
Q Consensus 26 ~~~~~~~~~~A~e~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~A~~~~~~a~~~~-~g~~~a~~~Lg~~ 95 (282)
.+...++.++|+++|.......-.-+. .+..+... .....+++++|...|++..+.. +.+...+..|-..
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 345688999999999876553211111 11111111 1123467899999999887532 2366777777777
Q ss_pred HhcCCCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHh
Q 023425 96 HLKYHVPGACKAMGAALLVDAANMG---DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL---HPGALYLLGTVYL 169 (282)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~ 169 (282)
|... .+.++|..+|++..+.| +...+..|=..|...+.. ++|...|..-.+.| +...+..|-..|.
T Consensus 115 ~~~~----g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~----~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 115 AVAK----DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA----DKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHH----TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHhc----CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 7755 46799999999998876 677777777778775554 99999999999886 6777778888888
Q ss_pred cCCCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 023425 170 TGDCVKKDIASALWCFHRASEKG---HAGAAIAYGSLLL 205 (282)
Q Consensus 170 ~g~g~~~d~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~ 205 (282)
. .++.++|..+|++--+.| +...+..|-.+|.
T Consensus 187 ~----~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 187 D----TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp H----TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred h----CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 7 899999999999987765 3444444444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=95.80 E-value=0.41 Score=43.86 Aligned_cols=173 Identities=13% Similarity=0.020 Sum_probs=102.0
Q ss_pred hhhhhhhhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc--
Q 023425 4 QISKASTLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEA-- 81 (282)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-- 81 (282)
.|..|..++..++..+.. ++++++.+.|.+++...+.......|...... .....+.....|+.|+..
T Consensus 10 ~i~~aR~vyer~l~~~P~---------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~-~~~~~~~i~~~fe~al~~vg 79 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS---------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRK-VSQKKFKLYEVYEFTLGQFE 79 (493)
T ss_dssp --CCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH-HC----CTHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHCCC---------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHcC
Confidence 477889999988888866 56899999999999877655444333322211 001234556677887753
Q ss_pred -CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCC--HH-----------------------------------
Q 023425 82 -DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGD--PD----------------------------------- 123 (282)
Q Consensus 82 -~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~----------------------------------- 123 (282)
++.++..|......+.......++.+.+...|++|+.... .+
T Consensus 80 ~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~ 159 (493)
T 2uy1_A 80 NYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQR 159 (493)
T ss_dssp TCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHH
Confidence 5666666666665544321111345667777777765211 00
Q ss_pred --------------HHHHHHHHHhcCCCC-cCC---HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 023425 124 --------------AQYELGCRLRVENDY-VQS---DQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALW 183 (282)
Q Consensus 124 --------------A~~~Lg~~y~~g~~~-~~d---~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~ 183 (282)
.+..+.. +..+.+. ..+ .......|++++.. ..+..+...+..+.. .++.++|..
T Consensus 160 y~~~~~~~~~~s~~~W~~y~~-~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~----~~~~~~ar~ 234 (493)
T 2uy1_A 160 YQQIQPLIRGWSVKNAARLID-LEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG----IGQKEKAKK 234 (493)
T ss_dssp HHHHHHHHHTCSHHHHHHHHH-HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHH-HHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHH
Confidence 0101010 1112211 111 34567788888874 567888888887776 678999999
Q ss_pred HHHHHHHc
Q 023425 184 CFHRASEK 191 (282)
Q Consensus 184 ~~~~A~~~ 191 (282)
.|++|+..
T Consensus 235 i~erAi~~ 242 (493)
T 2uy1_A 235 VVERGIEM 242 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99998776
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.083 Score=39.11 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCCCccCHHH
Q 023425 107 AMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH----PGALYLLGTVYLTGDCVKKDIAS 180 (282)
Q Consensus 107 ~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~----~~A~~~Lg~~y~~g~g~~~d~~~ 180 (282)
..+...|.++... -.+++.|++|..+.. ...+.+..+++..++.....++ -++.|.||..+.. .+++.+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk----lg~Y~~ 92 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH----TTCHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH----hhhHHH
Confidence 5556667777663 468999999998887 3335566789999999888764 4788999999888 899999
Q ss_pred HHHHHHHHHHc--CCHHHHH
Q 023425 181 ALWCFHRASEK--GHAGAAI 198 (282)
Q Consensus 181 A~~~~~~A~~~--g~~~a~~ 198 (282)
|+.+++..++. ++..|.-
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999988664 4566643
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.20 E-value=0.4 Score=35.69 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=49.7
Q ss_pred hhhhHHhhhhhhhcchhhhhhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH
Q 023425 8 ASTLKSAALGLLQSNQHQKRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTH 87 (282)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~ 87 (282)
.++.+.-+.+|+.|+.. .+..+++.++..-............|....++...+++++|.++.+..++.+|++..
T Consensus 40 ~qt~F~yAw~Lv~S~~~------~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDV------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHSSCH------HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred hhhHHHHHHHHHcCCCH------HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 45555556666666442 234566666666554444344555666666666667777777777777777777777
Q ss_pred HHHHHHH
Q 023425 88 ARYWLSK 94 (282)
Q Consensus 88 a~~~Lg~ 94 (282)
|......
T Consensus 114 A~~Lk~~ 120 (134)
T 3o48_A 114 VGALKSM 120 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.8 Score=35.44 Aligned_cols=120 Identities=13% Similarity=0.003 Sum_probs=70.8
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-----CHHHHHHHH
Q 023425 64 LIPLLKTAKENFELALEADNSNTH---------ARYWLSKLHLKYHVPGACKAMGAALLVDAANMG-----DPDAQYELG 129 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~---------a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-----~~~A~~~Lg 129 (282)
..+.++.|+-....++.+...+++ +++.+|..++.. +++..|...|++|++.. ++.+...++
T Consensus 32 d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~----~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 32 AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHD----KEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcc----cHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 346677777777776655444444 666777777654 56677777777776421 222211121
Q ss_pred HHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Q 023425 130 CRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA-SEKGHAGAAIAYGSLLL 205 (282)
Q Consensus 130 ~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A-~~~g~~~a~~~Lg~~y~ 205 (282)
. . ...+. ... ...+.+.-|.++.||.. .+++++|+..++.. .....+.....||.+|.
T Consensus 108 ~-~---ss~p~----s~~------~~~e~Elkykia~C~~~----l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 108 N-S---ASTPQ----SQC------LPSEIEVKYKLAECYTV----LKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp -----------------C------CCCHHHHHHHHHHHHHH----TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred c-c---CCCcc----ccc------ccchHHHHHHHHHHHHH----HCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 1 0 00000 000 01245677899999999 89999999988875 56678888888888763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=92.03 E-value=7 Score=35.55 Aligned_cols=48 Identities=8% Similarity=0.042 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC
Q 023425 68 LKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM 119 (282)
Q Consensus 68 ~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~ 119 (282)
.+.....|++++...|.++..|+.++..+... .+.++|...|++|+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~----~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI----GQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhC
Confidence 56678899999998899999999999988765 4679999999999765
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.97 E-value=0.35 Score=44.48 Aligned_cols=64 Identities=16% Similarity=0.015 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhc
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRV 134 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~ 134 (282)
.+..|..||++|+...|+++.+++.||.+.... .+.-.|+.+|.+|. ..-++.|.-||..++..
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~----~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSK----GDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT----TCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcc----cccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 357888888888888888888888888887753 45677888888886 44578888888877753
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.20 E-value=0.82 Score=34.46 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHH
Q 023425 66 PLLKTAKENFELALEADN-SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQ 125 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~-g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~ 125 (282)
.+..+++..++..+...| ..-+..|.|+.-+... +++.+|.++..... ++++..|.
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl----~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL----GEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHh----hhHHHHHHHHHHHHhcCCCcHHHH
Confidence 334444444444444333 2334444455544433 34455555554443 33444443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.18 E-value=1.2 Score=34.55 Aligned_cols=122 Identities=13% Similarity=0.112 Sum_probs=68.6
Q ss_pred ccchHHHHHHHHHHhhhhhH--------HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHhc
Q 023425 30 HSRNKKAMELIAKGWSALKE--------VDRVIDYCELNDRRLIPLLKTAKENFELALEADN---SNTHARYWLSKLHLK 98 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---g~~~a~~~Lg~~~~~ 98 (282)
.+.|+.|+-.....++.... .........++.....++|..|...|++|+.... ..+.+...++. .
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~-~-- 109 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN-S-- 109 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc-c--
Confidence 56688887766654443321 1223566777778888999999999999986322 12222111211 0
Q ss_pred CCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHh
Q 023425 99 YHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKA-VDQLHPGALYLLGTVYL 169 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kA-a~~g~~~A~~~Lg~~y~ 169 (282)
........ ...+.+--|.++.||.. .+++++|+..++.. .+.-.+.-...||.+|.
T Consensus 110 -----ss~p~s~~------~~~e~Elkykia~C~~~----l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 110 -----ASTPQSQC------LPSEIEVKYKLAECYTV----LKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp ------------C------CCCHHHHHHHHHHHHHH----TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred -----CCCccccc------ccchHHHHHHHHHHHHH----HCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 00010000 11245677888888888 44458888877764 34466777777777663
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.81 E-value=0.88 Score=41.79 Aligned_cols=75 Identities=19% Similarity=0.163 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--cCCHHHHHH
Q 023425 124 AQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE--KGHAGAAIA 199 (282)
Q Consensus 124 A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~g~~~a~~~ 199 (282)
.+..||.+..... .+..|..||.+|+.. ++...++.||.+... .++.-+|+-||.+++- ...+.|.-|
T Consensus 154 ~l~~LGDL~RY~~----~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~----~~~~l~a~y~y~rsl~~~~Pf~~a~~n 225 (497)
T 1ya0_A 154 CLVHLGDIARYRN----QTSQAESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTIFYYCRSIAVKFPFPAASTN 225 (497)
T ss_dssp HHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred HHHHcccHHHHHH----HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc----ccccHHHHHHHHHHHhcCCCChhHHHH
Confidence 3445666665533 347777777777776 567777777777776 6677777777777744 356667777
Q ss_pred HHHHHHc
Q 023425 200 YGSLLLR 206 (282)
Q Consensus 200 Lg~~y~~ 206 (282)
|...+..
T Consensus 226 L~~~f~~ 232 (497)
T 1ya0_A 226 LQKALSK 232 (497)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.28 E-value=1.8 Score=32.97 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=10.8
Q ss_pred ccCHHHHHHHHHHHHHc
Q 023425 175 KKDIASALWCFHRASEK 191 (282)
Q Consensus 175 ~~d~~~A~~~~~~A~~~ 191 (282)
.+|.++|...|+.+...
T Consensus 73 i~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 73 IQEPDDARDYFQMARAN 89 (161)
T ss_dssp HHCGGGCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 36667777777766543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.32 E-value=1.6 Score=32.83 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHH
Q 023425 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAG 195 (282)
Q Consensus 121 ~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~ 195 (282)
.+++.|+++-.+..... +.|..+++..++..... ..-++.|.|+.-+.. .+|+.+|+.+.+..++. ++..
T Consensus 38 s~~t~F~YAw~Lv~S~~-~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk----l~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTD-VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp CHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHTCCCCHH
T ss_pred cHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcCCCcHH
Confidence 45666666666655322 34456666666666654 245677777777777 77777777777777654 3444
Q ss_pred HH
Q 023425 196 AA 197 (282)
Q Consensus 196 a~ 197 (282)
|.
T Consensus 113 A~ 114 (144)
T 1y8m_A 113 VG 114 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.62 E-value=15 Score=34.61 Aligned_cols=120 Identities=10% Similarity=-0.053 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh-CCCHH-HHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN-MGDPD-AQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~-~g~~~-A~~~Lg~~y~~g~~~~~d~ 142 (282)
..|.+.|...|.+.....+-++.....+-..............++..|+.++.. ..+.. .....+.. +. ..|+
T Consensus 227 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~A-lr----~~d~ 301 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-LG----TGDR 301 (618)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-HH----HTCH
T ss_pred hcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHH-HH----CCCH
Confidence 356788888887775433334444433332222121111214677788877653 23333 33333333 33 4577
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
+.|..||.+.... ..+.+.|.+|..+.. .++.++|..+|++++...+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~----~g~~~~a~~~~~~~a~~~~ 350 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLE----RGREAEAKEILHQLMQQRG 350 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCC
Confidence 9999999887553 568889999999888 8999999999999987644
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=85.33 E-value=8.2 Score=36.64 Aligned_cols=85 Identities=12% Similarity=-0.020 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHH
Q 023425 119 MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAI 198 (282)
Q Consensus 119 ~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~ 198 (282)
..++..+..||.++...+. ++.|..+|.++ ++......|-.. .++.++....-+.+...|.....+
T Consensus 678 ~~~~~~W~~la~~al~~~~----~~~A~~~y~~~---~d~~~l~~l~~~-------~~~~~~~~~~~~~a~~~~~~~~A~ 743 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQRFN----FKLAIEAFTNA---HDLESLFLLHSS-------FNNKEGLVTLAKDAETTGKFNLAF 743 (814)
T ss_dssp CCCHHHHHHHHHHHHHTTC----HHHHHHHHHHH---TCHHHHHHHHHH-------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hCcHhHHHHHHHHHHHcCC----HHHHHHHHHHc---cChhhhHHHHHH-------cCCHHHHHHHHHHHHHcCchHHHH
Confidence 4556666666666666333 36666666654 333333222222 344444444444454455544433
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 199 AYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 199 ~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
.+ |.. .+++++|++.|...
T Consensus 744 ~~---~~~----~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 744 NA---YWI----AGDIQGAKDLLIKS 762 (814)
T ss_dssp HH---HHH----HTCHHHHHHHHHHT
T ss_pred HH---HHH----cCCHHHHHHHHHHc
Confidence 33 222 35555555555433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.03 E-value=9.8 Score=28.16 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL---HPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
+++.|+++-.+.... .+.|..+++..++...+.+ .-+++|.|+.-+.. .+|+++|+.+.+..++
T Consensus 40 ~qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk----lgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 40 IQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH----hhhHHHHHHHHHHHHh
Confidence 344444444443321 1223344444444444331 23444555555554 5555555555554443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=84.63 E-value=11 Score=35.80 Aligned_cols=96 Identities=15% Similarity=0.082 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++++|.+..+ ...++..|-.||.++... .+.+.|+++|.++ ++.+....|-.. ..+.+..
T Consensus 666 ~~~~~A~~~~~-----~~~~~~~W~~la~~al~~----~~~~~A~~~y~~~---~d~~~l~~l~~~-------~~~~~~~ 726 (814)
T 3mkq_A 666 GQLTLARDLLT-----DESAEMKWRALGDASLQR----FNFKLAIEAFTNA---HDLESLFLLHSS-------FNNKEGL 726 (814)
T ss_dssp TCHHHHHHHHT-----TCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHH---TCHHHHHHHHHH-------TTCHHHH
T ss_pred CCHHHHHHHHH-----hhCcHhHHHHHHHHHHHc----CCHHHHHHHHHHc---cChhhhHHHHHH-------cCCHHHH
Confidence 44666655533 336889999999999976 6789999999976 444444333332 2233444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 146 FYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 146 ~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
...-+.+...|.....+.+ |+. .+++++|++.|.+
T Consensus 727 ~~~~~~a~~~~~~~~A~~~---~~~----~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 727 VTLAKDAETTGKFNLAFNA---YWI----AGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHH---HHH----HTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHH---HHH----cCCHHHHHHHHHH
Confidence 4444444445555444433 333 5677777777754
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.59 E-value=12 Score=29.02 Aligned_cols=28 Identities=11% Similarity=-0.084 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 156 LHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 156 g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
++..-+..||..-+. .++++-|..+|++
T Consensus 32 ~~~~~Wk~Lg~~AL~----~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 32 NDSITWERLIQEALA----QGNASLAEMIYQT 59 (177)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHH
Confidence 344444445554444 4555555555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=83.70 E-value=2.7 Score=31.65 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023425 157 HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGS 202 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~ 202 (282)
+|+-.+.||..|.. .++..+|-+.+.+|++.|-++||.++-.
T Consensus 124 ~~~~l~kia~Ay~K----lg~~r~a~eLl~~AC~kG~kEAC~~in~ 165 (172)
T 1wy6_A 124 SASILVAIANALRR----VGDERDATTLLIEACKKGEKEACNAVNT 165 (172)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred ChHHHHHHHHHHHH----hcchhhHHHHHHHHHHhhhHHHHHHHHh
Confidence 38888899999988 8999999999999999999999877654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=82.62 E-value=6.9 Score=29.79 Aligned_cols=106 Identities=14% Similarity=0.022 Sum_probs=66.1
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCcC--HHHHHHHHHHHHhCC------CH----HHHHHHHHHHhcCCCCcCCHHHHHHH
Q 023425 81 ADNSNTHARYWLSKLHLKYHVPGAC--KAMGAALLVDAANMG------DP----DAQYELGCRLRVENDYVQSDQQAFYY 148 (282)
Q Consensus 81 ~~~g~~~a~~~Lg~~~~~~~~~~~~--~~~A~~~~~~Aa~~g------~~----~A~~~Lg~~y~~g~~~~~d~~~A~~~ 148 (282)
+.|.+++.|+.+-.+.+..+.+..| .+.-...|++|+..= .. .-+...+.. .. .+|.++|.+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e----i~D~d~aR~v 82 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA----IQEPDDARDY 82 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH----HHCGGGCHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH----hcCHHHHHHH
Confidence 6789999999998888855222111 256668899997522 21 223333332 22 3677999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCC
Q 023425 149 IEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGH 193 (282)
Q Consensus 149 ~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~ 193 (282)
|+.+...+..-|-+.+...-++- ..++..+|.+.+.+|+..+.
T Consensus 83 y~~a~~~hKkFAKiwi~~AqFEi--Rqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 83 FQMARANCKKFAFVHISFAQFEL--SQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHHHCTTBHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH--HcccHHHHHHHHHHHhccCC
Confidence 99997652222444444333321 17899999999999998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 282 | ||||
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 4e-08 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 3e-06 |
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 51.0 bits (120), Expect = 4e-08
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIAS 180
DP LG + E D+ QA Y EKA D + LG +Y G V+K++
Sbjct: 1 DPKELVGLGAKSYKEKDF----TQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKK 56
Query: 181 ALWCFHRASEKGHAGAAIAYG 201
A + +A + ++ G
Sbjct: 57 AASFYAKACDLNYSNGCHLLG 77
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 45.3 bits (105), Expect = 3e-06
Identities = 15/78 (19%), Positives = 31/78 (39%)
Query: 129 GCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188
G ++ ++A KA + + G + LG + G+ V ++ A+ F +
Sbjct: 185 GNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 244
Query: 189 SEKGHAGAAIAYGSLLLR 206
+ G GA L ++
Sbjct: 245 CKLGAKGACDILKQLKIK 262
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 282 | |||
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.97 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.95 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 99.94 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.76 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.7 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.64 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.62 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.53 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.36 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.35 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.33 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.28 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.26 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.25 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.24 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.23 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.19 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.13 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.11 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.09 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.07 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.06 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.04 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.04 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.03 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.03 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.02 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.97 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.93 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.86 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.86 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.79 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.74 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.74 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.73 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.73 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.71 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.64 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.62 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.61 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.59 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.57 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.56 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.55 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.33 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.26 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.01 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.54 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.54 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.23 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.73 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.66 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 85.87 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 80.33 |
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.97 E-value=3.8e-29 Score=211.93 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=213.2
Q ss_pred ccchHHHHHHHHHHhhhhh-HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALK-EVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.+++++|++||.++.+... ......+.....+.++++|+.+|..++++++ +++++.+++.||.++..+.....+.+.
T Consensus 15 ~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~--~~~~~~a~~~l~~~~~~~~~~~~~~~~ 92 (265)
T d1ouva_ 15 EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC--DLNYSNGCHLLGNLYYSGQGVSQNTNK 92 (265)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc--cccccchhhccccccccccccchhhHH
Confidence 4689999999999976332 2222334445556788999999999999995 568999999999999998888899999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 023425 109 GAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRA 188 (282)
Q Consensus 109 A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 188 (282)
|..+|+++++.|.+.++..||..+..+.....+...|+.++.+++..+++.+++.||.+|..|.++..+...+..|++++
T Consensus 93 a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a 172 (265)
T d1ouva_ 93 ALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKA 172 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhhhhcc
Confidence 99999999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH----HHchhchh------ccCCCHHHHHHHHHHHHHhccHHH
Q 023425 189 SEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----KARANLES------NLMNPVEKAKEQFEVAAQAGCNLG 258 (282)
Q Consensus 189 ~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~a~~~lg~------~~~~~~~~A~~~~~~Aa~~g~~~a 258 (282)
++.|++.|+++||.+|..|.++++|+++|+.||+++++ .++++||. ++++|+.+|++||++|++.|+..|
T Consensus 173 ~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A 252 (265)
T d1ouva_ 173 CDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 252 (265)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred ccccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999998 57778873 367799999999999999999999
Q ss_pred HHHHHHHHHH
Q 023425 259 LRWLQRIEEE 268 (282)
Q Consensus 259 ~~~l~~l~~~ 268 (282)
+..|..|..+
T Consensus 253 ~~~l~~l~~~ 262 (265)
T d1ouva_ 253 CDILKQLKIK 262 (265)
T ss_dssp HHHHHTCCCC
T ss_pred HHHHHHHHHH
Confidence 9999887654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.95 E-value=5e-26 Score=192.49 Aligned_cols=203 Identities=20% Similarity=0.168 Sum_probs=191.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
.+|+++|++||++|++ .|++.|++.||.+|..|.++++|+..|..|++++++.+++.++.+||.++..+...+.+.+.
T Consensus 15 ~~d~~~A~~~~~kAa~--~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 92 (265)
T d1ouva_ 15 EKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNK 92 (265)
T ss_dssp TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHH
Confidence 4679999999999965 58999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 145 AFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 145 A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
|+.+|+++++.|.+.++..||..+..+.....+...|+.++.++...+++.++++||.+|..|.+...+...+..|++++
T Consensus 93 a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a 172 (265)
T d1ouva_ 93 ALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKA 172 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhhhhcc
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HH----HHchhchh------ccCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 023425 225 AK----KARANLES------NLMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEEEE 269 (282)
Q Consensus 225 ~~----~a~~~lg~------~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~~~ 269 (282)
++ .+++++|. ++++|+.+|+.||++|+++|++.|++.|+.+....
T Consensus 173 ~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G 227 (265)
T d1ouva_ 173 CDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 227 (265)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcC
Confidence 98 56778873 36789999999999999999999999999999854
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=99.94 E-value=1.1e-26 Score=177.39 Aligned_cols=130 Identities=19% Similarity=0.093 Sum_probs=70.8
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCC
Q 023425 62 RRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 62 ~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d 141 (282)
.+|++|+++|+.||++|++. |++.+++.|| ..++.+.++|++||++|++.|++.|++.||.+|..|.++++|
T Consensus 3 ~gv~kd~~~A~~~~~kaa~~--g~~~a~~~l~------~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d 74 (133)
T d1klxa_ 3 GTVKKDLKKAIQYYVKACEL--NEMFGCLSLV------SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKD 74 (133)
T ss_dssp SSHHHHHHHHHHHHHHHHHT--TCTTHHHHHH------TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCC
T ss_pred CCcccCHHHHHHHHHHHHHC--CChhhhhhhc------cccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchh
Confidence 44555555555555555433 4555555543 223445555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcCCHHHHHH
Q 023425 142 DQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIA 199 (282)
Q Consensus 142 ~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g~~~a~~~ 199 (282)
.++|++||++|++.|++.|+++||.+|..|.+|++|+++|++||++|++.|++.||+.
T Consensus 75 ~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~A~~~ 132 (133)
T d1klxa_ 75 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGI 132 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHHHHHh
Confidence 5555555555555555555555555555555555555555555555555555555543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=99.94 E-value=4e-26 Score=174.33 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=117.8
Q ss_pred CCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCH
Q 023425 99 YHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDI 178 (282)
Q Consensus 99 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~ 178 (282)
|.++++|+++|++||++|++.|++.++++||. ..++|.++|+.||++|++.|++.|++.||.+|..|.++++|+
T Consensus 2 G~gv~kd~~~A~~~~~kaa~~g~~~a~~~l~~------~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~ 75 (133)
T d1klxa_ 2 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDL 75 (133)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCTTHHHHHHT------CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCCcccCHHHHHHHHHHHHHCCChhhhhhhcc------ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhh
Confidence 45688999999999999999999999999984 346788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHc
Q 023425 179 ASALWCFHRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKAR 229 (282)
Q Consensus 179 ~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~ 229 (282)
++|++||++|++.|++.|+++||.+|.+|.++++|.++|..||++|++.+.
T Consensus 76 ~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 76 RKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999998543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=9.4e-17 Score=139.09 Aligned_cols=222 Identities=16% Similarity=0.037 Sum_probs=181.8
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Q 023425 32 RNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAA 111 (282)
Q Consensus 32 ~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~ 111 (282)
....+...+.+.+...+ .........+......+++++|..+++++++.+|+++.++..+|.++... .++++|+.
T Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~A~~ 224 (388)
T d1w3ba_ 150 RLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA----RIFDRAVA 224 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT----TCTTHHHH
T ss_pred hhhhhHHHHHHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhcc----ccHHHHHH
Confidence 34444444444433222 12233333334444557799999999999999999999999999999966 46699999
Q ss_pred HHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 112 LLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 112 ~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
.|+++.+ ..++..++.+|.++... .++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~ 296 (388)
T d1w3ba_ 225 AYLRALSLSPNHAVVHGNLACVYYEQ----GLIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYNT 296 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHH
T ss_pred HHHHhHHHhhhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHh
Confidence 9999975 56889999999999984 4559999999999987 789999999999999 9999999999999
Q ss_pred HHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhc--c
Q 023425 188 ASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAG--C 255 (282)
Q Consensus 188 A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g--~ 255 (282)
+... .++...+.+|.+|.. .+++++|+.+|+++++ .+++++|. ...+++++|+.+|++|++.. +
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 372 (388)
T d1w3ba_ 297 ALRLCPTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred hhccCCccchhhhHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9875 568899999999998 8899999999999986 57888884 47889999999999999876 6
Q ss_pred HHHHHHHHHHHHHHh
Q 023425 256 NLGLRWLQRIEEEEK 270 (282)
Q Consensus 256 ~~a~~~l~~l~~~~~ 270 (282)
+.+...|+.+..+..
T Consensus 373 ~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 373 ADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcC
Confidence 888999999887654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.6e-16 Score=134.98 Aligned_cols=214 Identities=15% Similarity=0.011 Sum_probs=146.1
Q ss_pred hcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHH
Q 023425 28 WLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~ 107 (282)
...+++++|+..|.++++..+. .....+..+..+...+++++|+..|+++++.+|.++.+++.+|.+|... .+.+
T Consensus 30 ~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~ 104 (323)
T d1fcha_ 30 LQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE----SLQR 104 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccc----cccc
Confidence 3466677777777776653332 2333444444444556677777777777777777777777777776654 4556
Q ss_pred HHHHHHHHHHhCCCH--H---------HHHHHHHHHhcCCC--CcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhc
Q 023425 108 MGAALLVDAANMGDP--D---------AQYELGCRLRVEND--YVQSDQQAFYYIEKAVDQ----LHPGALYLLGTVYLT 170 (282)
Q Consensus 108 ~A~~~~~~Aa~~g~~--~---------A~~~Lg~~y~~g~~--~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~ 170 (282)
+|+..|+++...... . ....++........ ......+|...|.+++.. .++.++..+|.++..
T Consensus 105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 184 (323)
T d1fcha_ 105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 184 (323)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 777777776543211 0 01111111000000 012346788888888765 357888999999998
Q ss_pred CCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCH
Q 023425 171 GDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPV 240 (282)
Q Consensus 171 g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~ 240 (282)
.+++++|+.+|++++.. .++.+++++|.+|.. .+++++|+.+|+++++ .+++++|. ...+++
T Consensus 185 ----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 256 (323)
T d1fcha_ 185 ----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 256 (323)
T ss_dssp ----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred ----HHHHhhhhcccccccccccccccchhhhhhcccc----cccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCH
Confidence 89999999999999775 579999999999998 8999999999999987 57888884 478899
Q ss_pred HHHHHHHHHHHHhc
Q 023425 241 EKAKEQFEVAAQAG 254 (282)
Q Consensus 241 ~~A~~~~~~Aa~~g 254 (282)
++|+.+|++|++..
T Consensus 257 ~~A~~~~~~al~l~ 270 (323)
T d1fcha_ 257 REAVEHFLEALNMQ 270 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999864
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=5.9e-15 Score=127.50 Aligned_cols=152 Identities=17% Similarity=0.097 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHH
Q 023425 106 KAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASA 181 (282)
Q Consensus 106 ~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A 181 (282)
.++|..++++++ .+++++++..+|.++...+.. ++|+..|+++... ..+..++.+|.+|.. .+++++|
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A 256 (388)
T d1w3ba_ 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF----DRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLA 256 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT----THHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccH----HHHHHHHHHhHHHhhhHHHHHHHHHHHHHH----CCCHHHH
Confidence 455666666665 345677777777777764444 7777777777665 567777778888777 7888888
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHH
Q 023425 182 LWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAA 251 (282)
Q Consensus 182 ~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa 251 (282)
+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++.. ..+..+|. ...+++++|+.+|++|.
T Consensus 257 ~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 332 (388)
T d1w3ba_ 257 IDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888765 567888888888887 7788888888888776 34455563 37788999999999998
Q ss_pred Hhc--cHHHHHHHHHHHHHH
Q 023425 252 QAG--CNLGLRWLQRIEEEE 269 (282)
Q Consensus 252 ~~g--~~~a~~~l~~l~~~~ 269 (282)
+.. ++.+...++.+....
T Consensus 333 ~~~p~~~~~~~~la~~~~~~ 352 (388)
T d1w3ba_ 333 EVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp TSCTTCHHHHHHHHHHHHTT
T ss_pred HhCCCCHHHHHHHHHHHHHc
Confidence 755 567777788777644
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.6e-15 Score=129.93 Aligned_cols=211 Identities=14% Similarity=0.009 Sum_probs=155.9
Q ss_pred hhhhhhhhHHhhhhhhhcchhhh------hhcccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 023425 4 QISKASTLKSAALGLLQSNQHQK------RWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFEL 77 (282)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 77 (282)
+...|-..++.++..-..+...- ....+++++|++.+.++++..+ ......+..+..+...+++++|+..|++
T Consensus 34 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 112 (323)
T d1fcha_ 34 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRD 112 (323)
T ss_dssp CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccccccccccchhh
Confidence 34455555555554433332221 2237899999999999987443 3345555555556667899999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHhcCC-----------CCCcCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhcCCCCcCCH
Q 023425 78 ALEADNSNTHARYWLSKLHLKYH-----------VPGACKAMGAALLVDAANM----GDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 78 a~~~~~g~~~a~~~Lg~~~~~~~-----------~~~~~~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
++..+|................. .......+|+..|.++++. .++.++..+|.++.. ..++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~----~~~~ 188 (323)
T d1fcha_ 113 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----SGEY 188 (323)
T ss_dssp HHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH----TTCH
T ss_pred HHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH----HHHH
Confidence 99988776543322211111000 0012457889999999853 367889999999998 4455
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHH
Q 023425 143 QQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLN 218 (282)
Q Consensus 143 ~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~ 218 (282)
++|+.+|++++.. .++.+++.+|.+|.. .+++++|+.+|+++++. +++.++++||.+|.. .+++++|+
T Consensus 189 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~ 260 (323)
T d1fcha_ 189 DKAVDCFTAALSVRPNDYLLWNKLGATLAN----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN----LGAHREAV 260 (323)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHH
T ss_pred hhhhcccccccccccccccchhhhhhcccc----cccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH----CCCHHHHH
Confidence 9999999999886 689999999999999 99999999999999874 689999999999999 89999999
Q ss_pred HHHHHHHHH
Q 023425 219 AKRVSAAKK 227 (282)
Q Consensus 219 ~~~~~a~~~ 227 (282)
.+|++|++.
T Consensus 261 ~~~~~al~l 269 (323)
T d1fcha_ 261 EHFLEALNM 269 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999983
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=9.9e-15 Score=120.99 Aligned_cols=211 Identities=10% Similarity=-0.006 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHhhhh---hHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 33 NKKAMELIAKGWSAL---KEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 33 ~~~A~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+.|+..+.+.+... .+.....++..|..+...+++++|+..|+++++.+|+++.+++++|.+|... +++++|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~----g~~~~A 90 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA----GNFDAA 90 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHH----HHHHHh
Confidence 344555455544321 2233445555555555667799999999999999999999999999999976 578999
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
+..|+++++ +.++.+++++|.+|... .++++|+.+|+++++. .++.+...++.++.. ......+..+.
T Consensus 91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~ 162 (259)
T d1xnfa_ 91 YEAFDSVLELDPTYNYAHLNRGIALYYG----GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK----LDEKQAKEVLK 162 (259)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCHHHHHHHHH
T ss_pred hhhhhHHHHHHhhhhhhHHHHHHHHHHH----hhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH----hhhHHHHHHHH
Confidence 999999984 67899999999999984 4459999999999987 567777777777665 33333333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchh--ccCCCHHHHHHHHHHHHHhcc
Q 023425 186 HRASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLES--NLMNPVEKAKEQFEVAAQAGC 255 (282)
Q Consensus 186 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~--~~~~~~~~A~~~~~~Aa~~g~ 255 (282)
..............+...+..........+.+...+..+.. .+++++|. ...+++++|+.+|++|+...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 163 QHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 33333332222233444443322222333444333333222 57788884 478899999999999998764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.4e-14 Score=125.08 Aligned_cols=189 Identities=11% Similarity=-0.068 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
.+++|+..|++|++.+|.+..++++.|.++...+ .++++|+.++.+++ ++.+..+++++|.++...+.. ++
T Consensus 58 ~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~---~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~----~e 130 (315)
T d2h6fa1 58 RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ---KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP----SQ 130 (315)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----TT
T ss_pred chHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhC---cCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccH----HH
Confidence 3799999999999999999999999999987542 56899999999997 467999999999999885555 89
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC--CcccHHHHH
Q 023425 145 AFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQ--VPECLTKLN 218 (282)
Q Consensus 145 A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g--~~~~~~~A~ 218 (282)
|+.+|.++++. .+..+++++|.++.. .+++++|+.+|+++++. .+..|++++|.++..... ....+++|+
T Consensus 131 Al~~~~kal~~dp~n~~a~~~~~~~~~~----~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai 206 (315)
T d2h6fa1 131 ELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV 206 (315)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHHHHhhhhhhhhcchHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhH
Confidence 99999999987 689999999999998 89999999999999886 578899999998876432 345578899
Q ss_pred HHHHHHHH------HHchhchhc-cCCCHHHHHHHHHHHHHhc----cHHHHHHHHHHH
Q 023425 219 AKRVSAAK------KARANLESN-LMNPVEKAKEQFEVAAQAG----CNLGLRWLQRIE 266 (282)
Q Consensus 219 ~~~~~a~~------~a~~~lg~~-~~~~~~~A~~~~~~Aa~~g----~~~a~~~l~~l~ 266 (282)
..+.+++. .+++++|.. ......++...+.++.+.. ++.+...+..+.
T Consensus 207 ~~~~~al~~~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 207 QYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 99999987 467777744 3344567777777776654 344444444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=8.5e-14 Score=119.99 Aligned_cols=183 Identities=9% Similarity=-0.044 Sum_probs=145.6
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCc-hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRL-IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
.+.+++|++.+.++++..+. +....+..+..... .+++++|+.+|+++++.+|.++.+++++|.++... .++++
T Consensus 56 ~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l----~~~~e 130 (315)
T d2h6fa1 56 DERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL----RDPSQ 130 (315)
T ss_dssp TCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCCTT
T ss_pred CCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhh----ccHHH
Confidence 46789999999999985444 33443443333222 35799999999999999999999999999999976 35589
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC--CCccCHHHHH
Q 023425 109 GAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGD--CVKKDIASAL 182 (282)
Q Consensus 109 A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~--g~~~d~~~A~ 182 (282)
|+.+|.++++ +.+..+++++|.++...+.. ++|+.+|.++++. .+..|++++|.++.... .-.+++++|+
T Consensus 131 Al~~~~kal~~dp~n~~a~~~~~~~~~~~~~~----~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai 206 (315)
T d2h6fa1 131 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLW----DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV 206 (315)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHHHHhhhhhhhhcchHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhH
Confidence 9999999985 67999999999999985555 9999999999997 68999999999987632 2355688999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 183 WCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 183 ~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.++.+|++. +++.+++++|.++... ...++...++++.+
T Consensus 207 ~~~~~al~~~P~~~~~~~~l~~ll~~~-----~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 207 QYTLEMIKLVPHNESAWNYLKGILQDR-----GLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHTTT-----CGGGCHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhc-----ChHHHHHHHHHHHH
Confidence 999999875 6799999999998752 23455566666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=2.4e-12 Score=106.28 Aligned_cols=184 Identities=11% Similarity=-0.104 Sum_probs=129.4
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
.+++++|++.|.+++... +......+..|..+...+++++|+..|+++++.+|+++.+++++|.+|... .++++|
T Consensus 50 ~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----g~~~~A 124 (259)
T d1xnfa_ 50 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG----GRDKLA 124 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT----TCHHHH
T ss_pred CCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHH----hhHHHH
Confidence 788999999999999844 344555666777777778999999999999999999999999999999866 577999
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 110 AALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 110 ~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
+..|+++++ +.++.+...++..+..... .+.+..+...............+...+.......+....+...+..
T Consensus 125 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (259)
T d1xnfa_ 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDE----KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATD 200 (259)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhhh----HHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999985 4577777777766654222 1333333333333322222233334433322223334444444444
Q ss_pred HHH--cCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 188 ASE--KGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 188 A~~--~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.. ...+.++++||.+|.. .+++++|+.+|++|+.
T Consensus 201 ~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 201 NTSLAEHLSETNFYLGKYYLS----LGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHT
T ss_pred hhhcCcccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 333 3456789999999998 8899999999999965
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=4e-11 Score=101.40 Aligned_cols=209 Identities=12% Similarity=0.053 Sum_probs=151.8
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHhcCCCCC
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEA------DNSNTHARYWLSKLHLKYHVPG 103 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~g~~~a~~~Lg~~~~~~~~~~ 103 (282)
..++++|.+.|.++.. .+... +++++|+..|++|++. .++.+.++.++|.+|...
T Consensus 30 ~~~~~~Aa~~y~~aa~--------~y~~~-------~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~---- 90 (290)
T d1qqea_ 30 SYKFEEAADLCVQAAT--------IYRLR-------KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG---- 90 (290)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHT-------TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----
T ss_pred cccHHHHHHHHHHHHH--------HHHHC-------cCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh----
Confidence 3458999999988643 22222 4589999999999884 223346889999999866
Q ss_pred cCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHH
Q 023425 104 ACKAMGAALLVDAAN----MGD----PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTV 167 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~ 167 (282)
.++++|+..|+++++ .|+ ..++.++|.+|... ..++++|+.+|++|++. ++ ..++.++|.+
T Consensus 91 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~ 167 (290)
T d1qqea_ 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND---LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL 167 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhH---HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Confidence 578999999999975 344 56788899888642 35669999999999874 33 4567889999
Q ss_pred HhcCCCCccCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH-----------
Q 023425 168 YLTGDCVKKDIASALWCFHRASEKGH---------AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKK----------- 227 (282)
Q Consensus 168 y~~g~g~~~d~~~A~~~~~~A~~~g~---------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------- 227 (282)
|.. .+++++|+.+|++++.... ...++++|.++.. ..+++.|...++++.+.
T Consensus 168 ~~~----~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~d~~~A~~~~~~~~~~~~~~~~sre~~ 239 (290)
T d1qqea_ 168 KAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA----ATDAVAAARTLQEGQSEDPNFADSRESN 239 (290)
T ss_dssp HHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHGGGCC---------HH
T ss_pred HHH----cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCccchHHHH
Confidence 999 9999999999999987521 3456788888887 78899999988887541
Q ss_pred Hchhch-h---ccCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 023425 228 ARANLE-S---NLMNPVEKAKEQFEVAAQAGCNLGLRWLQRIEEEE 269 (282)
Q Consensus 228 a~~~lg-~---~~~~~~~~A~~~~~~Aa~~g~~~a~~~l~~l~~~~ 269 (282)
....+. . .....+.+|+..|.++.+.. +.-...|.++++..
T Consensus 240 ~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD-~~~~~~L~~~k~~l 284 (290)
T d1qqea_ 240 FLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD-KWKITILNKIKESI 284 (290)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhh
Confidence 011222 1 12445889999998777664 44444566666544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=5.9e-12 Score=108.40 Aligned_cols=217 Identities=8% Similarity=-0.057 Sum_probs=155.9
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHH---------HHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCC
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVID---------YCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHV 101 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~ 101 (282)
...++|++.+.+.+...++...... ...+......+.+++|+.+|+++++.+|.++.+++.+|.++...+
T Consensus 43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~- 121 (334)
T d1dcea1 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP- 121 (334)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS-
T ss_pred cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc-
Confidence 3458999999999876654432211 111122233467899999999999999999999999999988653
Q ss_pred CCcCHHHHHHHHHHHHh--CCCHHHH-HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCcc
Q 023425 102 PGACKAMGAALLVDAAN--MGDPDAQ-YELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKK 176 (282)
Q Consensus 102 ~~~~~~~A~~~~~~Aa~--~g~~~A~-~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~ 176 (282)
..+.++|+.++.++++ +.+..++ +.+|.++...+. +++|+.++++++.. .+..+++++|.+|.. .+
T Consensus 122 -~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~----~~ 192 (334)
T d1dcea1 122 -EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA----PAEELAFTDSLITRNFSNYSSWHYRSCLLPQ----LH 192 (334)
T ss_dssp -SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC----HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH----HS
T ss_pred -cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccc----cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hc
Confidence 2478999999999985 4577776 467788877444 49999999999987 689999999999886 33
Q ss_pred CHH------------------------------HHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 023425 177 DIA------------------------------SALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSA 224 (282)
Q Consensus 177 d~~------------------------------~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 224 (282)
+++ ++...|.+++.. .+..++..+|.++.. .++...|+..+.++
T Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTV----LQSELESCKELQEL 268 (334)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHH----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHH----HhhHHHHHHHHHHH
Confidence 322 222233333222 123334455556655 67788888888887
Q ss_pred HH------HHchhchhc--cCCCHHHHHHHHHHHHHhccHHHHHH
Q 023425 225 AK------KARANLESN--LMNPVEKAKEQFEVAAQAGCNLGLRW 261 (282)
Q Consensus 225 ~~------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g~~~a~~~ 261 (282)
.. .++..+|.. ..+++++|+.+|++|.+..+..+.++
T Consensus 269 ~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 269 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 65 577788843 77899999999999999987555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=6.8e-11 Score=94.20 Aligned_cols=111 Identities=14% Similarity=0.057 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+..|+++ .+.++.+++++|.+|... +++++|+.+|++|++ +.++.+++++|.+|.. ..+++
T Consensus 19 ~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~----g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~----~g~~~ 87 (192)
T d1hh8a_ 19 KDWKGALDAFSAV---QDPHSRICFNIGCMYTIL----KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ----TEKYD 87 (192)
T ss_dssp TCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHH
T ss_pred CCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh----hccHH
Confidence 4599999999875 567899999999999876 578999999999984 6789999999999988 44559
Q ss_pred HHHHHHHHHHHc--C----------------CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 144 QAFYYIEKAVDQ--L----------------HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 144 ~A~~~~~kAa~~--g----------------~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+|+..|++|+.. + ..+.++++|.+|.. .+++++|++.|.+|+..
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~----~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence 999999999863 1 14677888888888 88888888888888764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.1e-10 Score=92.89 Aligned_cols=121 Identities=10% Similarity=0.062 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 023425 88 ARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLG 165 (282)
Q Consensus 88 a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg 165 (282)
..++.|..+... +++++|+..|.+. ...++.+++++|.+|.. ..++++|+.+|++|++. .++.+++++|
T Consensus 7 ~l~~~g~~~~~~----~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~~----~g~~~~A~~~~~kAl~ldp~~~~a~~~~g 77 (192)
T d1hh8a_ 7 SLWNEGVLAADK----KDWKGALDAFSAV-QDPHSRICFNIGCMYTI----LKNMTEAEKAFTRSINRDKHLAVAYFQRG 77 (192)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHTS-SSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHhc-CCCCHHHHHHHHHHHHH----cCCchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 455667777654 6889999999875 44578999999999999 55559999999999987 7899999999
Q ss_pred HHHhcCCCCccCHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 023425 166 TVYLTGDCVKKDIASALWCFHRASEKG------------------HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAA 225 (282)
Q Consensus 166 ~~y~~g~g~~~d~~~A~~~~~~A~~~g------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 225 (282)
.+|.. .+++++|+..|++|+... ..++++++|.+|.. .+++++|...+++|.
T Consensus 78 ~~~~~----~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~----~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 78 MLYYQ----TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALAT 147 (192)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred HHHHh----hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH----CCCHHHHHHHHHHHH
Confidence 99999 999999999999998631 14667888888877 666666655555554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=7.8e-11 Score=86.12 Aligned_cols=95 Identities=12% Similarity=-0.070 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+..|+++++.+|.++.+++++|.+|... .++++|+..|+++++ ++++.+++++|.++.. ..+++
T Consensus 17 g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~ 88 (117)
T d1elwa_ 17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK----GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF----LNRFE 88 (117)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHH
T ss_pred CCHHHHHHHHHHHHhcCCcchhhhhccccccccc----ccccccchhhhhHHHhccchhhHHHHHHHHHHH----ccCHH
Confidence 4599999999999999999999999999999966 677999999999984 6799999999999998 44559
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVY 168 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y 168 (282)
+|+.+|+++++. .++.++..++.+-
T Consensus 89 ~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 999999999987 6888888887763
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=7.5e-12 Score=114.21 Aligned_cols=216 Identities=8% Similarity=-0.103 Sum_probs=112.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Q 023425 35 KAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLV 114 (282)
Q Consensus 35 ~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~ 114 (282)
+|++++.+++. +.+......+..+......+++++| |++++..+|..+.++...+.+... .+..++..++
T Consensus 4 eA~q~~~qA~~-l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~------~y~~~ie~~r 73 (497)
T d1ya0a1 4 QSAQYLRQAEV-LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNH------AFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHH-HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHH------HTHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHH------HHHHHHHHHH
Confidence 56777777765 3222222223333333333556655 777777776666665444443321 1245556666
Q ss_pred HHHhCC----CHHH-HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 023425 115 DAANMG----DPDA-QYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHR 187 (282)
Q Consensus 115 ~Aa~~g----~~~A-~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 187 (282)
+..+.. .... ...++.++.. ...++.|+..|.++... .+..++.++|..+.. .++.++|...+++
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a----~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~ 145 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAA----SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK----QTHTSAIVKPQSS 145 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHH----HHHHHHHHHHHTC-----------------------------------CCH
T ss_pred HhcccccCccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh----CCCHHHHHHHHHH
Confidence 665322 1111 1112222221 12234455555544433 566777788888777 7778888888888
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH------HHchhchhc--cCCCHHHHHHHHHHHHHhc--cHH
Q 023425 188 ASEKGHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK------KARANLESN--LMNPVEKAKEQFEVAAQAG--CNL 257 (282)
Q Consensus 188 A~~~g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------~a~~~lg~~--~~~~~~~A~~~~~~Aa~~g--~~~ 257 (282)
++......++++||.++.. .+++++|+.||++|+. ..+++||.+ ..++..+|+.+|.+|.... .+.
T Consensus 146 al~~~~~~~~~~LG~l~~~----~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~ 221 (497)
T d1ya0a1 146 SCSYICQHCLVHLGDIARY----RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred HhCCCHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Confidence 8777777788888888887 6778888888888887 577778854 5778889999999998754 777
Q ss_pred HHHHHHHHHHHHhhc
Q 023425 258 GLRWLQRIEEEEKRL 272 (282)
Q Consensus 258 a~~~l~~l~~~~~~~ 272 (282)
|..+|..+.+.....
T Consensus 222 a~~nL~~~~~~~~~~ 236 (497)
T d1ya0a1 222 ASTNLQKALSKALES 236 (497)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhhh
Confidence 888888888765443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.7e-10 Score=88.65 Aligned_cols=95 Identities=15% Similarity=-0.004 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~ 143 (282)
+++++|+.+|+++++.+|.++.+++++|.+|... .++++|+..|++|+ ++.++.+++.+|.++.. ..+++
T Consensus 24 ~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~----~g~~~ 95 (159)
T d1a17a_ 24 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT----ECYGYALGDATRAIELDKKYIKGYYRRAASNMA----LGKFR 95 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHH
T ss_pred CCHHHHHHHhhhccccchhhhhhhhhhHHHHHhc----cccchHHHHHHHHHHHcccchHHHHHHHHHHHH----cCCHH
Confidence 4599999999999999999999999999999977 57799999999997 46799999999999998 55569
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVY 168 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y 168 (282)
+|+.+|+++... .++.+...++.+.
T Consensus 96 eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 96 AALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 999999999987 6788888887764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.2e-10 Score=85.96 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=81.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCC----HHHHHHHHHHHhcCCCCcC
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGD----PDAQYELGCRLRVENDYVQ 140 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~----~~A~~~Lg~~y~~g~~~~~ 140 (282)
.+++++|++.|++++..+|.++++++++|.++...+. ..+.++|+..|++++..+. ++++++||.+|.. ..
T Consensus 12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~-~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~----~g 86 (122)
T d1nzna_ 12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LK 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH----Hh
Confidence 3569999999999999999999999999999875422 2567889999999986542 4588999999998 44
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 023425 141 SDQQAFYYIEKAVDQ--LHPGALYLLGTVYL 169 (282)
Q Consensus 141 d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~ 169 (282)
++++|+.+|+++.+. ++..|...++.+..
T Consensus 87 ~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 87 EYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 559999999999887 67888888877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=1.1e-09 Score=92.37 Aligned_cols=162 Identities=13% Similarity=0.026 Sum_probs=125.9
Q ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcC
Q 023425 64 LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM----GD----PDAQYELGCRLRVE 135 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~g 135 (282)
-..++++|..+|.+| |.+|... +++++|+..|++|++. ++ ..++.++|.+|..
T Consensus 29 ~~~~~~~Aa~~y~~a--------------a~~y~~~----~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~- 89 (290)
T d1qqea_ 29 DSYKFEEAADLCVQA--------------ATIYRLR----KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS- 89 (290)
T ss_dssp SHHHHHHHHHHHHHH--------------HHHHHHT----TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHC----cCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-
Confidence 345688888888877 4456644 5679999999999863 44 3578999999998
Q ss_pred CCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----CC----HHHHHH
Q 023425 136 NDYVQSDQQAFYYIEKAVDQ----LH----PGALYLLGTVYLTGDCVKKDIASALWCFHRASEK----GH----AGAAIA 199 (282)
Q Consensus 136 ~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g~----~~a~~~ 199 (282)
..++++|+.+|+++++. +. ..++.++|.+|... .+++++|+.+|++|++. +. ..++.+
T Consensus 90 ---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~ 163 (290)
T d1qqea_ 90 ---GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND---LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163 (290)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---hCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhH---HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Confidence 45569999999999875 33 67778899888641 58999999999999763 32 446889
Q ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHH-------------Hchhchh--ccCCCHHHHHHHHHHHHHhc
Q 023425 200 YGSLLLRGVQVPECLTKLNAKRVSAAKK-------------ARANLES--NLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 200 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------a~~~lg~--~~~~~~~~A~~~~~~Aa~~g 254 (282)
+|.+|.. .+++++|+.+|+++... .+.++|. ...+++..|...++++.+..
T Consensus 164 la~~~~~----~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 164 CADLKAL----DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHH----cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999 89999999999999872 1223442 36789999999999998765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=5.4e-10 Score=88.28 Aligned_cols=91 Identities=14% Similarity=-0.059 Sum_probs=58.1
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhc
Q 023425 57 CELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRV 134 (282)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 134 (282)
..|+.....+++++|+.+|++|++.+|.++.+++++|.+|... +++++|+.+|++|++ +.++.++++||.+|..
T Consensus 9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~----~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~ 84 (201)
T d2c2la1 9 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM----QQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhh----hhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3444444556777777777777777777777777777776655 455777777777653 4566666666666666
Q ss_pred CCCCcCCHHHHHHHHHHHHHc
Q 023425 135 ENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 135 g~~~~~d~~~A~~~~~kAa~~ 155 (282)
..++++|+.+|++|.+.
T Consensus 85 ----l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 85 ----MESYDEAIANLQRAYSL 101 (201)
T ss_dssp ----TTCHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHh
Confidence 33346666666666653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=2.2e-10 Score=90.60 Aligned_cols=96 Identities=16% Similarity=-0.016 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 023425 84 SNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPG 159 (282)
Q Consensus 84 g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~ 159 (282)
++++.....|..+... +++++|+.+|++|+ ++.++.+++++|.+|.. ..++++|+.+|++|++. .++.
T Consensus 2 ~~a~~l~~~Gn~~~~~----g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~----~~~~~~Ai~~~~~al~l~p~~~~ 73 (201)
T d2c2la1 2 PSAQELKEQGNRLFVG----RKYPEAAACYGRAITRNPLVAVYYTNRALCYLK----MQQPEQALADCRRALELDGQSVK 73 (201)
T ss_dssp CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSCTTCHH
T ss_pred hhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh----hhhhhhhhHHHHHHHHhCCCcHH
Confidence 5677888999999966 68899999999998 56899999999999999 45559999999999987 7899
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 160 ALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 160 A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
++++||.+|.. .+++++|+.+|++|++.
T Consensus 74 a~~~lg~~~~~----l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 74 AHFFLGQCQLE----MESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 99999999999 99999999999999873
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.07 E-value=3.1e-10 Score=86.20 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCC------CcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCC
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVP------GACKAMGAALLVDAA--NMGDPDAQYELGCRLRVEN 136 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~------~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~ 136 (282)
.+.+++|+..|++|++.+|+++++++++|.++...... ....++|+..|++|+ ++.+++++++||.+|...+
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence 35599999999999999999999999999998733111 133578999999987 4678999999999887543
Q ss_pred CCc-------CCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 023425 137 DYV-------QSDQQAFYYIEKAVDQ--LHPGALYLLGTVY 168 (282)
Q Consensus 137 ~~~-------~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y 168 (282)
... .++++|+.+|++|++. .+..+...|+.+.
T Consensus 90 ~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 90 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence 221 2345666666666655 4566666666553
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=3.3e-09 Score=77.15 Aligned_cols=105 Identities=8% Similarity=-0.124 Sum_probs=90.0
Q ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 023425 89 RYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLL 164 (282)
Q Consensus 89 ~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~L 164 (282)
...-|..+... .++++|+..|++++ ++.++.+++++|.+|.. ..++++|+..|.++++. +++.+++++
T Consensus 6 l~~~g~~~~~~----g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~ 77 (117)
T d1elwa_ 6 LKEKGNKALSV----GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLKPDWGKGYSRK 77 (117)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHhcCCcchhhhhcccccccc----cccccccchhhhhHHHhccchhhHHHHH
Confidence 34567777655 57899999999997 56799999999999998 55559999999999986 789999999
Q ss_pred HHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 023425 165 GTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLL 205 (282)
Q Consensus 165 g~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~ 205 (282)
|.+|.. .+++++|+.+|+++++. .++.+...++.+..
T Consensus 78 g~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 78 AAALEF----LNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999 99999999999999875 57888888887653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=2e-08 Score=84.35 Aligned_cols=211 Identities=9% Similarity=-0.095 Sum_probs=129.6
Q ss_pred ccchHHHHHHHHHHhhhhhH-----HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHH
Q 023425 30 HSRNKKAMELIAKGWSALKE-----VDRVIDYCELNDRRLIPLLKTAKENFELALEAD--------NSNTHARYWLSKLH 96 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~g~~~a~~~Lg~~~ 96 (282)
.|++++|++.+.+++..... .........+......+++..|...+.++++.. +..+.....+|.++
T Consensus 64 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 143 (366)
T d1hz4a_ 64 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 143 (366)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHH
Confidence 45666666666665542221 111112222222333345666666666665421 11123445566666
Q ss_pred hcCCCCCcCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C-----CHHH
Q 023425 97 LKYHVPGACKAMGAALLVDAANM-------GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ----L-----HPGA 160 (282)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~Aa~~-------g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~----g-----~~~A 160 (282)
... .+.+.+..++.++.+. ....+...++..+.. ..+..++..++.++... + .+.+
T Consensus 144 ~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 144 WAW----ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp HHT----TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHh----cchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 544 3456666666666532 124455556666555 33346677777666553 1 1345
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--------
Q 023425 161 LYLLGTVYLTGDCVKKDIASALWCFHRASEKG------HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK-------- 226 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-------- 226 (282)
...+|.++.. .+++++|..+++++.... ......++|.+|.. .+++++|..+++++..
T Consensus 216 ~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 287 (366)
T d1hz4a_ 216 NKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL----LGEFEPAEIVLEELNENARSLRLM 287 (366)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHh----cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhhcccC
Confidence 5667777777 788999999999886542 25567889999998 7899999999999875
Q ss_pred ----HHchhch--hccCCCHHHHHHHHHHHHHhccH
Q 023425 227 ----KARANLE--SNLMNPVEKAKEQFEVAAQAGCN 256 (282)
Q Consensus 227 ----~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g~~ 256 (282)
.++..+| ....+++++|+.+|++|.+....
T Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 288 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 2455666 34788999999999999887644
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.5e-10 Score=105.39 Aligned_cols=148 Identities=11% Similarity=0.023 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+.++.|+..|+++...+|.++.++.++|..+... .+.+.|+..++++++.....++.+||.++.. ..++++|
T Consensus 100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~----~~~~~~A 171 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQ----THTSAIVKPQSSSCSYICQHCLVHLGDIARY----RNQTSQA 171 (497)
T ss_dssp HHHHHHHHHHTC-----------------------------------CCHHHHHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhC----CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----cccHHHH
Confidence 4466677777777778899999999999999865 4668999999999988878999999999998 5566999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHcCC------CCcccHH
Q 023425 146 FYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE--KGHAGAAIAYGSLLLRGV------QVPECLT 215 (282)
Q Consensus 146 ~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~------g~~~~~~ 215 (282)
+.||++|++. +++.++++||.+|.. .+|..+|+.+|.+|+. ..++.|..+|+..+..-. .......
T Consensus 172 ~~~y~~A~~l~P~~~~~~~~Lg~~~~~----~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~ 247 (497)
T d1ya0a1 172 ESYYRHAAQLVPSNGQPYNQLAILASS----KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVS 247 (497)
T ss_dssp HHHHHHHHHHCTTBSHHHHHHHHHHHH----TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCCCSSCCHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 9999999997 789999999999999 8999999999999976 467999999999987521 2333345
Q ss_pred HHHHHHHHHH
Q 023425 216 KLNAKRVSAA 225 (282)
Q Consensus 216 ~A~~~~~~a~ 225 (282)
....+|-+..
T Consensus 248 ~~~~~f~~~~ 257 (497)
T d1ya0a1 248 DFIKAFIKFH 257 (497)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5555555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=4.5e-09 Score=80.44 Aligned_cols=105 Identities=10% Similarity=-0.069 Sum_probs=89.0
Q ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 023425 89 RYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLL 164 (282)
Q Consensus 89 ~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~L 164 (282)
+...|..|... +++++|+.+|++++ .+.++.+++++|.+|... .++++|+..|+++++. .++.+++.+
T Consensus 13 l~~~gn~~~~~----~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~kal~~~p~~~~a~~~~ 84 (159)
T d1a17a_ 13 LKTQANDYFKA----KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT----ECYGYALGDATRAIELDKKYIKGYYRR 84 (159)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHc----CCHHHHHHHhhhccccchhhhhhhhhhHHHHHhc----cccchHHHHHHHHHHHcccchHHHHHH
Confidence 33446666644 68899999999998 468999999999999994 4559999999999886 789999999
Q ss_pred HHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 023425 165 GTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLL 205 (282)
Q Consensus 165 g~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~ 205 (282)
|.+|.. .+++++|+.+|++++.. .++.+...++.+..
T Consensus 85 g~~~~~----~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 85 AASNMA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999 99999999999999876 56888888777653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=6.6e-10 Score=95.23 Aligned_cols=185 Identities=11% Similarity=-0.108 Sum_probs=133.7
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHH-HHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHhcCCCCCcCHH
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVID-YCELNDRRLIPLLKTAKENFELALEADNSNTHARY-WLSKLHLKYHVPGACKA 107 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~-~Lg~~~~~~~~~~~~~~ 107 (282)
.+++++|+.++.+.+...+....... ...........++++|+..++++++.+|.+..+++ .+|.++... ...+
T Consensus 86 ~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~----~~~~ 161 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA----VAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhc----cccH
Confidence 34478999999998875554332221 11111222345789999999999999999999875 567787754 5679
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCc---CC-------HH----------------HHHHHHHHHHHc--CC
Q 023425 108 MGAALLVDAAN--MGDPDAQYELGCRLRVENDYV---QS-------DQ----------------QAFYYIEKAVDQ--LH 157 (282)
Q Consensus 108 ~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~---~d-------~~----------------~A~~~~~kAa~~--g~ 157 (282)
+|+.+++++++ +.+.++++++|.++...+... .. .+ ++...|.+++.. .+
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~ 241 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcch
Confidence 99999999984 579999999999987644321 11 12 233333444333 33
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 158 PGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG--HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 158 ~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+.++..+|.++.. .+++.+|+..+.++.+.. ++.+++.+|.+|.. .+++++|+.+|+++.+
T Consensus 242 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 242 LFRCELSVEKSTV----LQSELESCKELQELEPENKWCLLTIILLMRALDP----LLYEKETLQYFSTLKA 304 (334)
T ss_dssp SSSCCCCHHHHHH----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT----GGGHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH----HhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 4444556666666 789999999999998764 57889999999988 8999999999999987
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.02 E-value=5.4e-10 Score=80.87 Aligned_cols=78 Identities=14% Similarity=0.045 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHH
Q 023425 67 LLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQ 144 (282)
Q Consensus 67 ~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~ 144 (282)
++++|+..|+++++.+|.++.+++.||.++... .++++|+.+|++++ ++.++++++.||.+|.. ..+.++
T Consensus 31 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~----~g~~~~ 102 (112)
T d1hxia_ 31 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN----EKDGLAIIALNHARMLDPKDIAVHAALAVSHTN----EHNANA 102 (112)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHHH
T ss_pred hhHHHHHHHhhhcccccccchhhhhhhhhhhhh----hhHHHhhcccccccccccccccchHHHHHHHHH----CCCHHH
Confidence 377777777777777777777777777777655 45577777777775 34567777777777766 334466
Q ss_pred HHHHHHHH
Q 023425 145 AFYYIEKA 152 (282)
Q Consensus 145 A~~~~~kA 152 (282)
|++++++.
T Consensus 103 A~~~l~~~ 110 (112)
T d1hxia_ 103 ALASLRAW 110 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666664
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.00 E-value=2.3e-09 Score=77.46 Aligned_cols=89 Identities=16% Similarity=-0.024 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 023425 89 RYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLL 164 (282)
Q Consensus 89 ~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~L 164 (282)
.+.+|..+... +++++|+.+|+++++ +.++++++.||.++.. ..++++|+.+|+++++. .++++++.|
T Consensus 19 ~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~l 90 (112)
T d1hxia_ 19 PMEEGLSMLKL----ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIAVHAAL 90 (112)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHH----hhhHHHHHHHhhhcccccccchhhhhhhhhhhh----hhhHHHhhcccccccccccccccchHHH
Confidence 45667776654 456777777777763 4577777777777777 33447777777777765 567777777
Q ss_pred HHHHhcCCCCccCHHHHHHHHHHHH
Q 023425 165 GTVYLTGDCVKKDIASALWCFHRAS 189 (282)
Q Consensus 165 g~~y~~g~g~~~d~~~A~~~~~~A~ 189 (282)
|.+|.. .+++++|++++++.+
T Consensus 91 a~~y~~----~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 91 AVSHTN----EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHH----CCCHHHHHHHHHHHh
Confidence 777777 777777777777653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=1.9e-08 Score=84.49 Aligned_cols=226 Identities=12% Similarity=-0.074 Sum_probs=162.8
Q ss_pred hcccchHHHHHHHHHHhhhhhHHH----HHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHh
Q 023425 28 WLHSRNKKAMELIAKGWSALKEVD----RVIDYCELNDRRLIPLLKTAKENFELALEADNSN------THARYWLSKLHL 97 (282)
Q Consensus 28 ~~~~~~~~A~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~------~~a~~~Lg~~~~ 97 (282)
...|++++|++++.+++...+... .......+..+...+++++|+.+|+++++..+.. ..++..++.++.
T Consensus 23 ~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (366)
T d1hz4a_ 23 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 102 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 346789999999999887554322 2233344455556678999999999998743322 346677888887
Q ss_pred cCCCCCcCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CCHHH
Q 023425 98 KYHVPGACKAMGAALLVDAANM----------GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ-------LHPGA 160 (282)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~-------g~~~A 160 (282)
.. .+...+...+.++... ........+|.++... .+++.+..++.++... ....+
T Consensus 103 ~~----~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 103 AQ----GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW----ARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HT----TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HH----HHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh----cchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 65 5779999999988641 1235677889999884 4459999999998874 24677
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHc----C-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-----
Q 023425 161 LYLLGTVYLTGDCVKKDIASALWCFHRASEK----G-----HAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK----- 226 (282)
Q Consensus 161 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----g-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----- 226 (282)
...++.++.. .+++.++..++.++... + ...+...++.++.. .++++.|..+++++..
T Consensus 175 ~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 246 (366)
T d1hz4a_ 175 LAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFAN 246 (366)
T ss_dssp HHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTT
T ss_pred HHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhcccc
Confidence 8888888888 88999999999988663 1 24467778888887 7889999999998865
Q ss_pred -----HHchhch--hccCCCHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHH
Q 023425 227 -----KARANLE--SNLMNPVEKAKEQFEVAAQAG--------CNLGLRWLQRIEEEE 269 (282)
Q Consensus 227 -----~a~~~lg--~~~~~~~~~A~~~~~~Aa~~g--------~~~a~~~l~~l~~~~ 269 (282)
..+.++| ....+++++|..+++++.... ...+...++.+....
T Consensus 247 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (366)
T d1hz4a_ 247 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 304 (366)
T ss_dssp CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC
Confidence 2344566 347889999999999997532 234555566665544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=4.6e-09 Score=77.14 Aligned_cols=97 Identities=9% Similarity=-0.047 Sum_probs=81.2
Q ss_pred cCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCCCccC
Q 023425 104 ACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLH----PGALYLLGTVYLTGDCVKKD 177 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~----~~A~~~Lg~~y~~g~g~~~d 177 (282)
.++++|.+.|++++. +.++++++++|.++..... +.|.++|+..|++++..+. +.++++||.+|.. .++
T Consensus 13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~-~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~----~g~ 87 (122)
T d1nzna_ 13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----LKE 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH----Hhh
Confidence 577999999999985 7899999999999976322 4466889999999998643 4589999999999 999
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 023425 178 IASALWCFHRASEK--GHAGAAIAYGSLLL 205 (282)
Q Consensus 178 ~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~ 205 (282)
+++|+.+|+++++. ++..|...++.+..
T Consensus 88 ~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 88 YEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999999775 56888888877654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=9.3e-09 Score=75.91 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHH-------HHHHHHHHHhcCC
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPD-------AQYELGCRLRVEN 136 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~-------A~~~Lg~~y~~g~ 136 (282)
+++++|+.+|+++++.+|.++.+++++|.+|... .++++|+.+|++|++ +.++. +++.+|.++..
T Consensus 18 ~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~-- 91 (128)
T d1elra_ 18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK----GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-- 91 (128)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH--
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHc----CchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH--
Confidence 4599999999999999999999999999999866 578999999999985 33433 44455555555
Q ss_pred CCcCCHHHHHHHHHHHHHc
Q 023425 137 DYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 137 ~~~~d~~~A~~~~~kAa~~ 155 (282)
..++++|+.+|.+++..
T Consensus 92 --~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 92 --EEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp --TTCHHHHHHHHHHHHHH
T ss_pred --hCCHHHHHHHHHHHHhc
Confidence 34446666666666544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=1.5e-08 Score=74.77 Aligned_cols=108 Identities=17% Similarity=0.063 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHH---
Q 023425 123 DAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAG--- 195 (282)
Q Consensus 123 ~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~--- 195 (282)
.++-++|..++. ..++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|++|++. .++.
T Consensus 5 ~~~k~~G~~~~~----~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~~ 76 (128)
T d1elra_ 5 LKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENREDYR 76 (128)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH----cCchHHHHHHHHHHHHhCcccHHHHH
Confidence 455678888887 44558888888888887 578888888888888 88888888888888763 2333
Q ss_pred ----HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhchhccCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHH
Q 023425 196 ----AAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAG-CNLGLRWLQRIEEE 268 (282)
Q Consensus 196 ----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg~~~~~~~~~A~~~~~~Aa~~g-~~~a~~~l~~l~~~ 268 (282)
+++++|.++.. .+++++|+.+|.++.... ++.....+..+.+.
T Consensus 77 ~~a~~~~~lg~~~~~------------------------------~~~~~~A~~~~~kal~~~~~~~~~~~l~~~~k~ 124 (128)
T d1elra_ 77 QIAKAYARIGNSYFK------------------------------EEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124 (128)
T ss_dssp HHHHHHHHHHHHHHH------------------------------TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------------------------------hCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34444444444 345567777777776653 44455555554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.79 E-value=1e-08 Score=77.50 Aligned_cols=114 Identities=11% Similarity=-0.034 Sum_probs=81.9
Q ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCC----------chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC
Q 023425 30 HSRNKKAMELIAKGWSALKEVDRVIDYCELNDRR----------LIPLLKTAKENFELALEADNSNTHARYWLSKLHLKY 99 (282)
Q Consensus 30 ~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~ 99 (282)
.+.+++|++.|.+++...+. +....+..|..+. ..+.+++|+..|++|++.+|.++.++++||.+|...
T Consensus 10 ~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 44589999999999875543 2333333332221 346689999999999999999999999999999754
Q ss_pred CCCC-------cCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 100 HVPG-------ACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 100 ~~~~-------~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
+... ..+++|+.+|++|+ ++.+..++..|+.. .+|.+.+.++-++
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-----------~ka~~~~~e~~k~ 142 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-----------AKAPQLHAEAYKQ 142 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HTHHHHHHHHHHS
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 2211 24688999999997 56799999999987 3455555555444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=6.1e-08 Score=75.00 Aligned_cols=112 Identities=16% Similarity=0.036 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++++|+.+|++|++..|..+. ..........-+ ...++.++|.+|.. ..++++|
T Consensus 27 ~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~k----~~~~~~A 81 (170)
T d1p5qa1 27 GKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHLK----LQAFSAA 81 (170)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHHH----TTCHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHHh----hhhcccc
Confidence 4599999999999876543322 111111111111 12467889999998 4555999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 146 FYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 146 ~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
+.++.++++. .++.+++++|.+|.. .+++++|+.+|+++++. +++.+...|+.++..
T Consensus 82 ~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 82 IESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccccchhhhHHHHHHHHH----hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999987 689999999999999 89999999999999775 579999999998775
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=5.5e-08 Score=67.79 Aligned_cols=75 Identities=19% Similarity=0.141 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ---------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK- 191 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~---------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~- 191 (282)
++.+|.||.++.+ ..|+++|+.||++|++. ..++++.+||.+|.. .+++++|+.+|++|++.
T Consensus 5 addc~~lG~~~~~----~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~----~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh----cCChHHHHHHHHHHHHhC
Confidence 4566777777776 44447777777777653 125677778887777 77788888888887664
Q ss_pred -CCHHHHHHHHHHH
Q 023425 192 -GHAGAAIAYGSLL 204 (282)
Q Consensus 192 -g~~~a~~~Lg~~y 204 (282)
.++.+..+|+.+.
T Consensus 77 P~~~~a~~Nl~~~~ 90 (95)
T d1tjca_ 77 PEHQRANGNLKYFE 90 (95)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 5677777776654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=1.5e-07 Score=72.67 Aligned_cols=108 Identities=10% Similarity=-0.017 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023425 88 ARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTV 167 (282)
Q Consensus 88 a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~ 167 (282)
.....|..+... .++++|+.+|++|++.-. ..............-+ ...++.++|.+
T Consensus 15 ~l~~~G~~~~~~----~~~~~Ai~~y~~al~~~~------------~~~~~~~~~~~~~~~~-------~~~~~~nla~~ 71 (170)
T d1p5qa1 15 IVKERGTVYFKE----GKYKQALLQYKKIVSWLE------------YESSFSNEEAQKAQAL-------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHH----TCHHHHHHHHHHHHHHTT------------TCCCCCSHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHHHhh------------hccccchHHHhhhchh-------HHHHHHHHHHH
Confidence 444566666644 577888888888876311 1111111111111111 13467889999
Q ss_pred HhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 168 YLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 168 y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
|.. .+++++|+.++++|+.. .++.+++++|.+|.. .++++.|+.+|+++..
T Consensus 72 y~k----~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 72 HLK----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQ 124 (170)
T ss_dssp HHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHh----hhhcccccchhhhhhhccccchhhhHHHHHHHHH----hhhHHHHHHHHHHHHH
Confidence 999 89999999999999875 579999999999999 8999999999999988
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.73 E-value=1.3e-07 Score=72.78 Aligned_cols=79 Identities=15% Similarity=0.036 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHH
Q 023425 120 GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAG 195 (282)
Q Consensus 120 g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~ 195 (282)
..+.++.++|.+|.. .+++++|+.+|.+|++. +++.+++++|.+|.. .+++++|+..|++|++. +++.
T Consensus 75 ~~~~~~~nla~~~~~----~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~----l~~~~~A~~~~~~al~l~p~n~~ 146 (169)
T d1ihga1 75 VALSCVLNIGACKLK----MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKA 146 (169)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHHHh----hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHH
Confidence 356788899999998 55669999999999987 789999999999999 89999999999999886 5788
Q ss_pred HHHHHHHHHHc
Q 023425 196 AAIAYGSLLLR 206 (282)
Q Consensus 196 a~~~Lg~~y~~ 206 (282)
+...|+.++..
T Consensus 147 ~~~~l~~~~~~ 157 (169)
T d1ihga1 147 IQAELLKVKQK 157 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887754
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.71 E-value=8.6e-08 Score=73.85 Aligned_cols=82 Identities=13% Similarity=-0.023 Sum_probs=67.8
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C
Q 023425 81 ADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--L 156 (282)
Q Consensus 81 ~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g 156 (282)
.+|..+.++.++|.+|... .++++|+..|.+|++ ++++.+++++|.+|... .++++|+..|+++++. +
T Consensus 72 ~~~~~~~~~~nla~~~~~~----~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l----~~~~~A~~~~~~al~l~p~ 143 (169)
T d1ihga1 72 LQPVALSCVLNIGACKLKM----SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL----KEYDQALADLKKAQEIAPE 143 (169)
T ss_dssp GHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTT
T ss_pred hChhhHHHHHHHHHHHHhh----cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHc----cCHHHHHHHHHHHHHhCCC
Confidence 4566777888899998876 578999999999985 67899999999999984 4459999999999987 6
Q ss_pred CHHHHHHHHHHHhc
Q 023425 157 HPGALYLLGTVYLT 170 (282)
Q Consensus 157 ~~~A~~~Lg~~y~~ 170 (282)
++.+...|+.++..
T Consensus 144 n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 144 DKAIQAELLKVKQK 157 (169)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888888654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.64 E-value=5.2e-07 Score=69.31 Aligned_cols=77 Identities=18% Similarity=0.097 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHH
Q 023425 122 PDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAA 197 (282)
Q Consensus 122 ~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~ 197 (282)
...+.++|.+|.. ..++++|+.++.++++. +++.+++++|.+|.. .+++++|+.+|+++++. +++.+.
T Consensus 64 ~~~~~Nla~~~~~----l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~----l~~~~~A~~~~~~al~l~P~n~~~~ 135 (168)
T d1kt1a1 64 LAAFLNLAMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAAR 135 (168)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHhHHHHHHH----hhhcccchhhhhhhhhcccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3456678888777 45558888888888775 678888888888887 77888888888887765 467777
Q ss_pred HHHHHHHHc
Q 023425 198 IAYGSLLLR 206 (282)
Q Consensus 198 ~~Lg~~y~~ 206 (282)
..++.+...
T Consensus 136 ~~l~~~~~~ 144 (168)
T d1kt1a1 136 LQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.62 E-value=4.6e-07 Score=68.61 Aligned_cols=113 Identities=12% Similarity=-0.010 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++.+|+..|++|++.-+.... . . +....-..... ....+.|+|.+|.. ..++++|
T Consensus 31 ~~y~~A~~~Y~~al~~~~~~~~--------------~-~--~~~~~~~~~~~---~~~~~~Nla~~~~~----l~~~~~A 86 (153)
T d2fbna1 31 NEINEAIVKYKEALDFFIHTEE--------------W-D--DQILLDKKKNI---EISCNLNLATCYNK----NKDYPKA 86 (153)
T ss_dssp TCHHHHHHHHHHHHHTTTTCTT--------------C-C--CHHHHHHHHHH---HHHHHHHHHHHHHH----TTCHHHH
T ss_pred CCHHHHHHHHHHHHhhCcchhh--------------h-h--hHHHHHhhhhH---HHHHHhhHHHHHHH----hcccchh
Confidence 4599999999999864322110 0 0 11111111111 23577889999998 4455999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Q 023425 146 FYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLR 206 (282)
Q Consensus 146 ~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~ 206 (282)
+.++.+|++. .++.|++++|.+|.. .+++++|+.+|+++++. +++.+...++.+...
T Consensus 87 l~~~~~al~~~p~~~ka~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 87 IDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred hhhhhccccccchhhhhhHHhHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999887 689999999999999 99999999999999775 678888888887654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.8e-07 Score=65.06 Aligned_cols=76 Identities=13% Similarity=-0.024 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM---------GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ 155 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~---------g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~ 155 (282)
+++.+|.+|.++... +++..|+.||++|++. ..++++.+||.+|.. ..++++|+.+|+++++.
T Consensus 4 saddc~~lG~~~~~~----g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~----~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 4 TAEDSFELGKVAYTE----ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh----cCChHHHHHHHHHHHHh
Confidence 467889999998876 6889999999999752 126789999999999 45559999999999987
Q ss_pred --CCHHHHHHHHHHH
Q 023425 156 --LHPGALYLLGTVY 168 (282)
Q Consensus 156 --g~~~A~~~Lg~~y 168 (282)
+++.|..+|+.+.
T Consensus 76 ~P~~~~a~~Nl~~~~ 90 (95)
T d1tjca_ 76 DPEHQRANGNLKYFE 90 (95)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH
Confidence 7899999998764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=2.5e-06 Score=71.71 Aligned_cols=174 Identities=10% Similarity=-0.046 Sum_probs=116.2
Q ss_pred hhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC--C-HHHHHHHHHHHhcCCCCcCC
Q 023425 66 PLLKTAKENFELALEA-DNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG--D-PDAQYELGCRLRVENDYVQS 141 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~-~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~-~~A~~~Lg~~y~~g~~~~~d 141 (282)
+..++|...|++|++. .|.++..++.++.++... .+.+.|...|+++++.. + ...+..++.+... ..+
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~----~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~----~~~ 149 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESR----MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEG 149 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH----HHC
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----cCC
Confidence 4577888888888763 567777777777777755 45678888888887532 2 3356666766665 334
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHH
Q 023425 142 DQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKL 217 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A 217 (282)
.+.|...|+++.+. .....+...+...... .++.+.|...|++++.. .++..+..++.++.. .++++.|
T Consensus 150 ~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~---~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~----~g~~~~a 222 (308)
T d2onda1 150 IKSGRMIFKKAREDARTRHHVYVTAALMEYYC---SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNT 222 (308)
T ss_dssp HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT---SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----cCChHHH
Confidence 47888888888776 3555566666553331 46778888888888775 457777777777776 6777888
Q ss_pred HHHHHHHHHHHc----------hhch--hccCCCHHHHHHHHHHHHHhc
Q 023425 218 NAKRVSAAKKAR----------ANLE--SNLMNPVEKAKEQFEVAAQAG 254 (282)
Q Consensus 218 ~~~~~~a~~~a~----------~~lg--~~~~~~~~~A~~~~~~Aa~~g 254 (282)
...|++|+...- .... -..-|+.+.+...++++.+.-
T Consensus 223 R~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 223 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 888888876211 1111 114467888888888887643
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.57 E-value=3.2e-07 Score=69.48 Aligned_cols=115 Identities=9% Similarity=-0.080 Sum_probs=72.0
Q ss_pred cccchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHH
Q 023425 29 LHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAM 108 (282)
Q Consensus 29 ~~~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~ 108 (282)
..+++.+|+..|.++++.+.... ...+.........+ ....+.++|.+|... .++++
T Consensus 29 ~~~~y~~A~~~Y~~al~~~~~~~--------------~~~~~~~~~~~~~~-----~~~~~~Nla~~~~~l----~~~~~ 85 (153)
T d2fbna1 29 KKNEINEAIVKYKEALDFFIHTE--------------EWDDQILLDKKKNI-----EISCNLNLATCYNKN----KDYPK 85 (153)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCT--------------TCCCHHHHHHHHHH-----HHHHHHHHHHHHHHT----TCHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcchh--------------hhhhHHHHHhhhhH-----HHHHHhhHHHHHHHh----cccch
Confidence 46789999999999886443211 00111111122221 134566777777755 45677
Q ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 023425 109 GAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLT 170 (282)
Q Consensus 109 A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~ 170 (282)
|+..+.+|+ ++.++.+++++|.+|.. ..++++|+.+|+++.+. +++.+...++.+...
T Consensus 86 Al~~~~~al~~~p~~~ka~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 86 AIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred hhhhhhccccccchhhhhhHHhHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 777777776 45677777777777777 44447777777777766 567777777766543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=2.2e-05 Score=65.62 Aligned_cols=181 Identities=8% Similarity=-0.013 Sum_probs=130.0
Q ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhcCCCCCcCHHHH
Q 023425 31 SRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTH-ARYWLSKLHLKYHVPGACKAMG 109 (282)
Q Consensus 31 ~~~~~A~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~g~~~-a~~~Lg~~~~~~~~~~~~~~~A 109 (282)
...++|.+.|.+++....+......+.........+++++|...|+++++..|.++. .+..++.+.... .+.+.|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~----~~~~~a 153 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA----EGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH----HCHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc----CChHHH
Confidence 346788888999887654444444444444445567899999999999988877654 677778777754 456899
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 023425 110 AALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCF 185 (282)
Q Consensus 110 ~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~ 185 (282)
...|+++.+. .++..+...+.+.... .++.+.|...|+++... .++..+...+.++.. .+++++|+.+|
T Consensus 154 r~i~~~al~~~~~~~~~~~~~a~~e~~~---~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~----~g~~~~aR~~f 226 (308)
T d2onda1 154 RMIFKKAREDARTRHHVYVTAALMEYYC---SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLF 226 (308)
T ss_dssp HHHHHHHHTSTTCCTHHHHHHHHHHHHT---SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHh---ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----cCChHHHHHHH
Confidence 9999999864 4667777777664432 34568999999999986 678888888888887 78999999999
Q ss_pred HHHHHcC--CH----HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 186 HRASEKG--HA----GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 186 ~~A~~~g--~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
++|+... ++ ..+.....+-.. .++.+.+...++++.+
T Consensus 227 e~ai~~~~~~~~~~~~iw~~~~~fE~~----~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 227 ERVLTSGSLPPEKSGEIWARFLAFESN----IGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHSSSSCGGGCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 9998863 22 223333333333 4678888888888766
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.55 E-value=5.4e-07 Score=69.23 Aligned_cols=76 Identities=14% Similarity=-0.024 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHH
Q 023425 87 HARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALY 162 (282)
Q Consensus 87 ~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~ 162 (282)
..+.++|.+|... .++++|+.+++++++ ++++.+++++|.+|.. ..++++|+.+|.++... +++.+..
T Consensus 65 ~~~~Nla~~~~~l----~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~----l~~~~~A~~~~~~al~l~P~n~~~~~ 136 (168)
T d1kt1a1 65 AAFLNLAMCYLKL----REYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARL 136 (168)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHhHHHHHHHh----hhcccchhhhhhhhhcccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3566778887765 567888888888864 6778888888888887 34448888888888776 5777777
Q ss_pred HHHHHHhc
Q 023425 163 LLGTVYLT 170 (282)
Q Consensus 163 ~Lg~~y~~ 170 (282)
.++.+...
T Consensus 137 ~l~~~~~~ 144 (168)
T d1kt1a1 137 QIFMCQKK 144 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777644
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.33 E-value=1.8e-06 Score=65.23 Aligned_cols=77 Identities=10% Similarity=-0.096 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHc--C------------CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc-------------CCH
Q 023425 142 DQQAFYYIEKAVDQ--L------------HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK-------------GHA 194 (282)
Q Consensus 142 ~~~A~~~~~kAa~~--g------------~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------------g~~ 194 (282)
+++|+..|++|++. . .+.++.++|.+|.. .+++++|+.++++|+.. ...
T Consensus 25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~----lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 100 (156)
T d2hr2a1 25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRSFDEALHSADKALHYFNRRGELNQDEGKLWI 100 (156)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH----cCccchhhHhhhhhhhcccccccccccccchhH
Confidence 36666666666553 1 13566777777777 77777777777777642 123
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 195 GAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 195 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
.+++++|.+|.. .+++++|+.+|++|.+
T Consensus 101 ~a~~~~g~~~~~----lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 101 SAVYSRALALDG----LGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHH----HHHHHHHHHHHHHHHH
Confidence 467777777777 5666666666666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.26 E-value=1.2e-06 Score=66.31 Aligned_cols=94 Identities=20% Similarity=0.031 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++++|+..|++|+++.|..|+... .+.. ...+.++.++|.+|..- .++++|
T Consensus 23 g~y~~Ai~~y~~Al~i~~~~~~~~~-------------~~~~-----------~~~a~~~~nlg~~~~~l----g~~~~A 74 (156)
T d2hr2a1 23 GEYDEAAANCRRAMEISHTMPPEEA-------------FDHA-----------GFDAFCHAGLAEALAGL----RSFDEA 74 (156)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSC-------------CCHH-----------HHHHHHHHHHHHHHHHT----TCHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhhhhhh-------------cccc-----------hhHHHHHHHHHHHHHHc----Cccchh
Confidence 3488888888888887666542100 0000 00123444555555552 222555
Q ss_pred HHHHHHHHHc-------------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 146 FYYIEKAVDQ-------------LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 146 ~~~~~kAa~~-------------g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
+.++.++... ....+++++|.+|.. .+++++|+.+|++|++.
T Consensus 75 ~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~----lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 75 LHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred hHhhhhhhhcccccccccccccchhHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 5555555432 123466777777777 77777777777777653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.01 E-value=3e-06 Score=70.07 Aligned_cols=115 Identities=10% Similarity=-0.079 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhcCCCCcCCH
Q 023425 65 IPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAAN--MGDPDAQYELGCRLRVENDYVQSD 142 (282)
Q Consensus 65 ~~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~g~~~~~d~ 142 (282)
.+++++|+..|+++++.+|+++.+...||.+|... .++++|+..|+++++ +.+..+...++.++.... ..
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~----G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~----~~ 80 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCID----GDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ----AR 80 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH----HH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc----cc
Confidence 35699999999999999999999999999999965 578999999999985 568888888988765411 11
Q ss_pred HHHHHHHHHHHHcCCH---HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc
Q 023425 143 QQAFYYIEKAVDQLHP---GALYLLGTVYLTGDCVKKDIASALWCFHRASEK 191 (282)
Q Consensus 143 ~~A~~~~~kAa~~g~~---~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 191 (282)
.++...+.+....+.+ .+....+.++.. .+++++|...++++.+.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~----~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMV----SQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhc
Confidence 3333322222222333 334555667776 78899999999988764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.54 E-value=0.00074 Score=51.72 Aligned_cols=123 Identities=7% Similarity=-0.171 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHH
Q 023425 85 NTHARYWLSKLHLKYHVPGACKAMGAALLVDAANM--GDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQLHPGALY 162 (282)
Q Consensus 85 ~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g~~~A~~ 162 (282)
.-+++...|...... .+.++|+..|.+|+.. |++-+.+ ........- ....+.....++.
T Consensus 10 ~f~~~~~~g~~~~~~----g~~e~A~~~~~~AL~l~rG~~l~~~----------~~~~w~~~~----r~~l~~~~~~a~~ 71 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAA----GRFEQASRHLSAALREWRGPVLDDL----------RDFQFVEPF----ATALVEDKVLAHT 71 (179)
T ss_dssp HHHHHHHHHHHHHHT----TCHHHHHHHHHHHHTTCCSSTTGGG----------TTSTTHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhhCcccccccC----------cchHHHHHH----HHHHHHHHHHHHH
Confidence 356777788777755 5678888889888864 3321100 000000111 1112224567889
Q ss_pred HHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHchhch
Q 023425 163 LLGTVYLTGDCVKKDIASALWCFHRASEK--GHAGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAKKARANLE 233 (282)
Q Consensus 163 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~a~~~lg 233 (282)
+++.++.. .+++++|+.++++++.. .+..++..|+.+|.. .++...|+..|+++...-.-.+|
T Consensus 72 ~la~~~~~----~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~----~Gr~~eAl~~y~~~~~~L~~eLG 136 (179)
T d2ff4a2 72 AKAEAEIA----CGRASAVIAELEALTFEHPYREPLWTQLITAYYL----SDRQSDALGAYRRVKTTLADDLG 136 (179)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH----CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHhC
Confidence 99999999 89999999999999775 579999999999998 78888888888777554333343
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.54 E-value=0.00028 Score=54.20 Aligned_cols=103 Identities=12% Similarity=-0.048 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCcCCHHHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYELGCRLRVENDYVQSDQQA 145 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~g~~~~~d~~~A 145 (282)
+++++|...|.+|+++.+|++...+..+ ++ ..-....++.....++.+++.++.. ..++++|
T Consensus 25 g~~e~A~~~~~~AL~l~rG~~l~~~~~~-----------~w---~~~~r~~l~~~~~~a~~~la~~~~~----~g~~~~A 86 (179)
T d2ff4a2 25 GRFEQASRHLSAALREWRGPVLDDLRDF-----------QF---VEPFATALVEDKVLAHTAKAEAEIA----CGRASAV 86 (179)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTS-----------TT---HHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccccccCcch-----------HH---HHHHHHHHHHHHHHHHHHHHHHHHH----CCCchHH
Confidence 4599999999999998888753322111 10 0111122334467899999999998 4455999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 023425 146 FYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASE 190 (282)
Q Consensus 146 ~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 190 (282)
+.++++++.. .+..++..|+.+|.. .+++.+|+..|+++..
T Consensus 87 l~~~~~al~~~P~~e~~~~~l~~al~~----~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 87 IAELEALTFEHPYREPLWTQLITAYYL----SDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence 9999999987 789999999999999 8999999999999844
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.23 E-value=0.0003 Score=57.55 Aligned_cols=111 Identities=9% Similarity=-0.045 Sum_probs=82.6
Q ss_pred cCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH
Q 023425 104 ACKAMGAALLVDAA--NMGDPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIA 179 (282)
Q Consensus 104 ~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~ 179 (282)
.+.++|+..|++++ +++++++...||.+|.. ..++++|+..|+++++. .+..+...++.++.. .+..+
T Consensus 10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~----~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a----~~~~~ 81 (264)
T d1zbpa1 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCI----DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----AQARK 81 (264)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----HHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccccH
Confidence 57899999999998 46899999999999998 44459999999999987 678888888888765 44444
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023425 180 SALWCFHRASEKGH---AGAAIAYGSLLLRGVQVPECLTKLNAKRVSAAK 226 (282)
Q Consensus 180 ~A~~~~~~A~~~g~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 226 (282)
+++..+.++...+. ..+....+..+.. .++.++|...++++.+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~----~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMV----SQDYEQVSELALQIEE 127 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHh
Confidence 44444443333333 3345566777776 7888888888888876
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.003 Score=45.03 Aligned_cols=64 Identities=8% Similarity=-0.049 Sum_probs=48.5
Q ss_pred chhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHH
Q 023425 64 LIPLLKTAKENFELALEADNSNT-HARYWLSKLHLKYHVPGACKAMGAALLVDAA--NMGDPDAQYELGCR 131 (282)
Q Consensus 64 ~~~~~~~A~~~~~~a~~~~~g~~-~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa--~~g~~~A~~~Lg~~ 131 (282)
...++.+++..++.++..+|.+. +++|+||..|... +++++|.+++.+++ ++++..|..-.-.+
T Consensus 50 ~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yykl----gdy~~A~~~~~~~L~ieP~n~qA~~L~~~I 116 (124)
T d2pqrb1 50 DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL----GEYSMAKRYVDTLFEHERNNKQVGALKSMV 116 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence 44678888888888887776554 7888888888865 67889999988886 57788776554443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.66 E-value=0.004 Score=44.36 Aligned_cols=73 Identities=10% Similarity=0.082 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHc--CCHH
Q 023425 121 DPDAQYELGCRLRVENDYVQSDQQAFYYIEKAVDQL---HPGALYLLGTVYLTGDCVKKDIASALWCFHRASEK--GHAG 195 (282)
Q Consensus 121 ~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--g~~~ 195 (282)
.+++.|++|-.+.... ...|.++++..++.+...+ ..+++|.||..|.. .+++++|+.+++++++. ++..
T Consensus 34 s~qt~F~YAw~Lv~S~-~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk----lgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp CHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcchHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHccCCCcHH
Confidence 3566677776666532 2445667777777776542 24677777777777 77777777777777654 4555
Q ss_pred HHH
Q 023425 196 AAI 198 (282)
Q Consensus 196 a~~ 198 (282)
|..
T Consensus 109 A~~ 111 (124)
T d2pqrb1 109 VGA 111 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=85.87 E-value=8.6 Score=32.06 Aligned_cols=118 Identities=11% Similarity=-0.018 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCC-CHHH-HHHHHHHHhcCCCCcCCHH
Q 023425 66 PLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMG-DPDA-QYELGCRLRVENDYVQSDQ 143 (282)
Q Consensus 66 ~~~~~A~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~~~A-~~~Lg~~y~~g~~~~~d~~ 143 (282)
.|.+.|...+.......+-.+.....+..............+.+..++......+ +... ...++..+. ..|+.
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~-----~~~~~ 302 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALG-----TGDRR 302 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-----HTCHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHH-----cCChH
Confidence 4556666666665544444555554444444333222233456666666555432 2222 223333332 33456
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHcC
Q 023425 144 QAFYYIEKAVDQ--LHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKG 192 (282)
Q Consensus 144 ~A~~~~~kAa~~--g~~~A~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~g 192 (282)
.+..++...... ..+.+.|.+|..+.. .++.+.|..+|..++...
T Consensus 303 ~~~~~~~~l~~~~~~~~r~~YW~gRa~~~----~G~~~~A~~~~~~~a~~~ 349 (450)
T d1qsaa1 303 GLNTWLARLPMEAKEKDEWRYWQADLLLE----RGREAEAKEILHQLMQQR 349 (450)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCcccccHHHHHHHHHHHHHH----cCChhhHHHHHHHHhcCC
Confidence 666666654332 456777777777777 677777777777777654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=80.33 E-value=7.3 Score=27.11 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhCCCHHHHHHH
Q 023425 72 KENFELALEADNSNTHARYWLSKLHLKYHVPGACKAMGAALLVDAANMGDPDAQYEL 128 (282)
Q Consensus 72 ~~~~~~a~~~~~g~~~a~~~Lg~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~L 128 (282)
.+.++..++-+.-+|+-...+|..|..- .+..++-..+.+|++.|-.+|+.+.
T Consensus 106 d~i~~~l~kn~~i~~~~llkia~A~kki----g~~re~nell~~ACe~G~KeAC~~i 158 (161)
T d1wy6a1 106 EEIGREILKNNEVSASILVAIANALRRV----GDERDATTLLIEACKKGEKEACNAV 158 (161)
T ss_dssp HHHHHHHC--CCSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHh----cchhhHHHHHHHHHHHhHHHHHHHh
Confidence 3444554444556677777777777765 3447777778888888777777654
|