Citrus Sinensis ID: 023482

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG
Secondary Structure (PSIPRED)
cccccHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEccccccEEEcccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEEEccccHHHHHHHccccccEEEEccccccccHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHccccccccEEEEEHHHHHHHHHcccccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccEHHHEccccccccccccccccccccccccccHEcccHHHcccHHHHHHHHHHHcccHEHHccccccccHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHcccEEEEEEcHHHHHHHHHcccccccEEEEEccEHEEcHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHEEEEEEEEcc
Coil and Loop (DISEMBL)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQmyglssngeragrqnqnrhriaMTTSTLLvfqnpllpkptrpahssiagvQKGAASACIVCARSQDDDYHATIKALnskgrfprkslgqhymlNSEINDQLAAAAAVQEGDivleigpgtgsLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVvanipfnisTDVIkqllpmgdIFSEVVLLLQEETALRlvepslrtseyrpinIFVNFYSG
Flexible Loop (DISEMBL)
mgelvaevgckslterqVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKalnskgrfprKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRlvepslrtseyrpinifvnfysg
Low Complexity Region (SEG)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG
Disordered region (IsUnstruct)
****VAEVGCKSLTERQVVSVIYRILGTYCSQMYGL****************IAMTTSTLLVFQNPLL**********IAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY**
Disordered Region (DISOPRED)
**ELVAEVGCKSLTERQVVSVIYRILGTYCSQMY********************MTTSTLLVFQNPL**************************************KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG
Disordered Region (DISEMBL)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPT***************SACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG
Disordered Region (DISPRO)
*GELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGL*************RHRIAMTTSTLLVFQNPLLPKPT*******************VCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGELVAEVGCKSLTERQVVSVIYRILGTYCSQMYGLSSNGERAGRQNQNRHRIAMTTSTLLVFQNPLLPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
Q6ME80	284	Ribosomal RNA small subun	yes	no	0.583	0.577	0.367	4e-22
B8D0I2	301	Ribosomal RNA small subun	yes	no	0.562	0.524	0.343	1e-19
Q8DND3	290	Ribosomal RNA small subun	yes	no	0.619	0.6	0.320	3e-19
Q04II4	290	Ribosomal RNA small subun	yes	no	0.619	0.6	0.320	3e-19
C1CMT3	290	Ribosomal RNA small subun	yes	no	0.619	0.6	0.320	3e-19
Q5N2S8	279	Ribosomal RNA small subun	yes	no	0.498	0.501	0.362	5e-19
Q31RH6	279	Ribosomal RNA small subun	yes	no	0.498	0.501	0.362	5e-19
Q8TWU7	278	Probable ribosomal RNA sm	yes	no	0.555	0.561	0.354	6e-19
Q2RME8	288	Ribosomal RNA small subun	yes	no	0.622	0.607	0.320	7e-19
B1XIV9	273	Ribosomal RNA small subun	yes	no	0.505	0.520	0.357	7e-19

>sp|Q6ME80|RSMA_PARUW Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 104/177 (58%), Gaps = 13/177 (7%)

Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
           LN  G FP+K L Q+++++  I  ++  A+ VQ G++VLEIGPG GSLT  +L   A V+
Sbjct: 13  LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVV 72

Query: 168 AIEKDQHMVGLVRE--RFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
           A+EKD     L RE  RF +   QL++  ED +   +   + S    R      AKV+AN
Sbjct: 73  AVEKD---FVLARELKRFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIAN 125

Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
           +P++++T ++ +++    +FS + +++QEE A R+   P    S+Y    IF+NFYS
Sbjct: 126 LPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPG--QSDYSSFTIFLNFYS 180

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
Protochlamydia amoebophila (strain UWE25) (taxid: 264201)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 8EC: 2

>sp|B8D0I2|RSMA_HALOH Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 5/163 (3%)

Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
           K LGQ+++++  I D++   A +   DIV+EIGPG GSLT  ++     V A EKD+ +V
Sbjct: 24  KGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLV 83

Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
            ++RE F   + L+V+ +D ++   +      F+ R  S    KV+AN+P+ I+T VI  
Sbjct: 84  KVLRELFNGYNHLEVIGQDVLEVDWK----HFFDSRGISDRSVKVLANLPYYITTPVIMG 139

Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
           LL     FS +VL++Q+E A R+   +  + +Y  +++ V +Y
Sbjct: 140 LLESNITFSLMVLMVQKEVADRMA-AAPGSKDYGALSVAVQYY 181

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) (taxid: 373903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q8DND3|RSMA_STRR6 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rsmA PE=3 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)

Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
           DY  T   L   G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L
Sbjct: 5   DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64

Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
               A V+A E D  +V ++ +     D + V+ ED +K  +  H+    +  K+ +   
Sbjct: 65  AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120

Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
           KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R+  +P+  T  Y  ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178

Query: 279 Y 279
           Y
Sbjct: 179 Y 179

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (taxid: 171101)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q04II4|RSMA_STRP2 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rsmA PE=3 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)

Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
           DY  T   L   G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L
Sbjct: 5   DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64

Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
               A V+A E D  +V ++ +     D + V+ ED +K  +  H+    +  K+ +   
Sbjct: 65  AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120

Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
           KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R+  +P+  T  Y  ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178

Query: 279 Y 279
           Y
Sbjct: 179 Y 179

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (taxid: 373153)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|C1CMT3|RSMA_STRZP Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain P1031) GN=rsmA PE=3 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)

Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
           DY  T   L   G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L
Sbjct: 5   DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64

Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
               A V+A E D  +V ++ +     D + V+ ED +K  +  H+    +  K+     
Sbjct: 65  AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120

Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
           KVVAN+P+ I+T ++  L+  G  FSE V+++Q+E A R+  +P+  T  Y  ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178

Query: 279 Y 279
           Y
Sbjct: 179 Y 179

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Streptococcus pneumoniae (strain P1031) (taxid: 488223)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q5N2S8|RSMA_SYNP6 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rsmA PE=3 SV=1

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 9/149 (6%)

Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           RK  GQH++ +  I D++ AAA ++  D VLEIGPG G+LT  LL A   ++A+E D+ +
Sbjct: 4   RKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLAAVDGLVAVELDRDL 63

Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
           +G +++RF   +   +L+ D ++    + +      R   +  +KVVANIP+NI+  +++
Sbjct: 64  IGQLQQRFGQAENFCLLEGDILQLDWTAAIAD----RPRFANPSKVVANIPYNITGPILQ 119

Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL 259
            LL     P    F  +VLL+Q+E A RL
Sbjct: 120 SLLGTIAQPRRPAFERLVLLVQQEVADRL 148

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q31RH6|RSMA_SYNE7 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus elongatus (strain PCC 7942) GN=rsmA PE=3 SV=1

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 9/149 (6%)

Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           RK  GQH++ +  I D++ AAA ++  D VLEIGPG G+LT  LL A   ++A+E D+ +
Sbjct: 4   RKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLAAVDGLVAVELDRDL 63

Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
           +G +++RF   +   +L+ D ++    + +      R   +  +KVVANIP+NI+  +++
Sbjct: 64  IGQLQQRFGQAENFCLLEGDILQLDWTAAIAD----RPRFANPSKVVANIPYNITGPILQ 119

Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL 259
            LL     P    F  +VLL+Q+E A RL
Sbjct: 120 SLLGTIAQPRRPAFERLVLLVQQEVADRL 148

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|Q8TWU7|RSMA_METKA Probable ribosomal RNA small subunit methyltransferase A OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rsmA PE=3 SV=1

 Score = 94.7 bits (234), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)

Query: 108 LNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATV 166
           L SK G  PR+ LGQH+M++  I + +  AA V+E DIVLEIGPG G LT  L+     V
Sbjct: 10  LRSKYGIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTRAGQV 69

Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
           +A+E D  MV +++        L++++ DF++  +                  KVVANIP
Sbjct: 70  IAVELDGRMVEILKRELGEAPNLEIVRADFLEYDV-------------PDDVNKVVANIP 116

Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
           +NIS+ +  +LL +       VL  Q E A R+V EP   + +Y  + + VN  +
Sbjct: 117 YNISSPITFKLLELD--IDVAVLTYQREFAERMVAEPG--SKKYSRLTVMVNLLA 167

Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q2RME8|RSMA_MOOTA Ribosomal RNA small subunit methyltransferase A OS=Moorella thermoacetica (strain ATCC 39073) GN=rsmA PE=3 SV=1

 Score = 94.7 bits (234), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 3/178 (1%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
           T+  +  KG  PRKS GQ++++++ I  ++A AA V  GD V+EIGPG G+LT  L    
Sbjct: 10  TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARA 69

Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
             V+AIE D+ +   + E  A  D ++++  D +K      +  +    +      KVVA
Sbjct: 70  GLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVA 129

Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYS 280
           N+P+ I+T ++  LL      +E+VL++Q E   R L  P     +Y  +++ V +Y+
Sbjct: 130 NLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPG--GKDYGALSVVVQYYT 185

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

>sp|B1XIV9|RSMA_SYNP2 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rsmA PE=3 SV=1

 Score = 94.7 bits (234), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 9/151 (5%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
           PRK  GQH++ + +I D++ AAA +Q  D VLEIGPG G+LT+ LL     +L++E D+ 
Sbjct: 3   PRKRFGQHWLTDQQILDEIVAAANLQPTDRVLEIGPGKGALTSRLLPQVEALLSVEIDRD 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +   + + +       +L+ D+++  I +  L  F + ++     KVVANIP+NI+  ++
Sbjct: 63  LCKYMVKNYGDRPNFLLLEADYLQTDI-NEFLGDFPQFQNPR---KVVANIPYNITGPIL 118

Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV 260
           ++LL     P  + F  +VLL+Q+E   RLV
Sbjct: 119 EKLLGTIDRPNSNPFESIVLLIQKEVGDRLV 149

Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
8570453	239	Identical to dimethyladenosine transfera	0.676	0.794	0.772	1e-83
297842936	342	hypothetical protein ARALYDRAFT_470090 [	0.676	0.555	0.772	2e-83
15220982	343	Ribosomal RNA adenine dimethylase family	0.676	0.553	0.772	2e-83
225453766	335	PREDICTED: ribosomal RNA small subunit m	0.729	0.611	0.725	9e-83
356568329	341	PREDICTED: ribosomal RNA small subunit m	0.754	0.621	0.705	9e-82
224130164	210	predicted protein [Populus trichocarpa]	0.725	0.971	0.733	1e-81
356532056	341	PREDICTED: ribosomal RNA small subunit m	0.758	0.624	0.7	9e-81
449432199	347	PREDICTED: ribosomal RNA small subunit m	0.647	0.524	0.783	2e-79
255541450	338	dimethyladenosine transferase, putative	0.743	0.618	0.697	9e-79
357507115	349	Ribosomal RNA small subunit methyltransf	0.676	0.544	0.71	1e-74

>gi|8570453|gb|AAF76480.1|AC020622_14 Identical to dimethyladenosine transferase (PFC1) from Arabidopsis thaliana gb|AF051326 and contains a Ribosomal RNA Adenine Dimethylases PF|00398 domain. This gene may be cut off, partial [Arabidopsis thaliana]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/193 (77%), Positives = 169/193 (87%), Gaps = 3/193 (1%)

Query: 91  IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
           + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 47  VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
           GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166

Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
            R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226

Query: 268 EYRPINIFVNFYS 280
           EYRPINI +NFYS
Sbjct: 227 EYRPINILINFYS 239

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842936|ref|XP_002889349.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata] gi|297335191|gb|EFH65608.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp. lyrata]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/193 (77%), Positives = 169/193 (87%), Gaps = 3/193 (1%)

Query: 91  IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
           + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 46  VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 105

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
           GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 106 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 165

Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
            R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 166 SRRLSHPDSSLAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 225

Query: 268 EYRPINIFVNFYS 280
           EYRPINI +NFYS
Sbjct: 226 EYRPINILINFYS 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220982|ref|NP_171690.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] gi|3005590|gb|AAC09322.1| dimethyladenosine transferase [Arabidopsis thaliana] gi|26449914|dbj|BAC42078.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|28827572|gb|AAO50630.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gi|332189223|gb|AEE27344.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/193 (77%), Positives = 169/193 (87%), Gaps = 3/193 (1%)

Query: 91  IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
           + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 47  VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
           GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166

Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
            R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226

Query: 268 EYRPINIFVNFYS 280
           EYRPINI +NFYS
Sbjct: 227 EYRPINILINFYS 239

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453766|ref|XP_002270274.1| PREDICTED: ribosomal RNA small subunit methyltransferase A [Vitis vinifera] gi|296089082|emb|CBI38785.3| unnamed protein product [Vitis vinifera]

 Score =  312 bits (800), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 153/211 (72%), Positives = 175/211 (82%), Gaps = 6/211 (2%)

Query: 75  AHSSIAGVQKGAASA--CIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQ 132
           +H   + + +G+     CI CARSQDD YHAT+ ALNSKGR PRKSLGQHYMLNS IN+Q
Sbjct: 22  SHPKPSSLVQGSTRTPLCITCARSQDD-YHATLDALNSKGRTPRKSLGQHYMLNSSINEQ 80

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
           LA  A +++GD++LEIGPGTGSLTNVLL+AGATVLAIEKD HM  LVRERFA  D+LKVL
Sbjct: 81  LADTADIRDGDVILEIGPGTGSLTNVLLDAGATVLAIEKDAHMAALVRERFAVTDRLKVL 140

Query: 193 QEDFVKCHIRSHMLSLFERRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVL 249
           QEDF+KCHI  H+ SL E +K+    S +AKVV+NIPFNISTDV+K LLPMGDIFSEVVL
Sbjct: 141 QEDFMKCHIHPHLFSLLESKKAKNKESRYAKVVSNIPFNISTDVVKILLPMGDIFSEVVL 200

Query: 250 LLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
           LLQ+ETALRLVE SLRT EYRPINIFVNFYS
Sbjct: 201 LLQDETALRLVEASLRTQEYRPINIFVNFYS 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568329|ref|XP_003552364.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Glycine max]

 Score =  309 bits (791), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 156/221 (70%), Positives = 176/221 (79%), Gaps = 9/221 (4%)

Query: 67  LLPKPTRPAHSSIAGVQKGAASACIVCARS-------QDDDYHATIKALNSKGRFPRKSL 119
           LL +  +PAH S AGV++   +  +VCA           DDYHAT+KALNSKGRFPRKSL
Sbjct: 19  LLNRHHKPAHDSTAGVRR--RTPYVVCAEKGSRASTRSADDYHATLKALNSKGRFPRKSL 76

Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
           GQHYMLN++INDQLA AA V++GD+VLEIGPGTGSLTNVLLN+GA VLA+EKD+HM  LV
Sbjct: 77  GQHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVLLNSGAFVLAVEKDKHMAALV 136

Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
            ERF+S  +LKVL ED VKCH+RSHM SL       S  AKVVANIPFNISTDVIK LLP
Sbjct: 137 SERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSINPESRKAKVVANIPFNISTDVIKLLLP 196

Query: 240 MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
           MGDIFSEVVLLLQEETA+RLV  SLRT EYRPIN+FVNFYS
Sbjct: 197 MGDIFSEVVLLLQEETAVRLVVSSLRTPEYRPINVFVNFYS 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130164|ref|XP_002320768.1| predicted protein [Populus trichocarpa] gi|222861541|gb|EEE99083.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 154/210 (73%), Positives = 173/210 (82%), Gaps = 6/210 (2%)

Query: 75  AHSSIAGVQKGAASACIVCA-RSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQL 133
           AH+S+    K      I CA +   DDYHAT+KALNS+ R PRKSLGQHYMLN EIN+QL
Sbjct: 3   AHNSLTSPPKRTLD--ITCASKRSPDDYHATLKALNSRDRRPRKSLGQHYMLNDEINEQL 60

Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193
            A+A V+EGD++LEIGPGTGSLTNVL++AGATVLAIEKD HM  LVRERFA  ++ KVLQ
Sbjct: 61  VASANVEEGDLILEIGPGTGSLTNVLIDAGATVLAIEKDAHMAALVRERFADTNRFKVLQ 120

Query: 194 EDFVKCHIRSHMLSLFERRKSSSG---FAKVVANIPFNISTDVIKQLLPMGDIFSEVVLL 250
           EDF+KCHIRSHMLS+ E   S S    +AKVVANIPFNISTDVIKQLLP GDIFSE+VLL
Sbjct: 121 EDFIKCHIRSHMLSMLESMGSLSEKPRYAKVVANIPFNISTDVIKQLLPTGDIFSEIVLL 180

Query: 251 LQEETALRLVEPSLRTSEYRPINIFVNFYS 280
           LQ+ETALRLVE SLRTSEYRPINIFVNFYS
Sbjct: 181 LQDETALRLVESSLRTSEYRPINIFVNFYS 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532056|ref|XP_003534590.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Glycine max]

 Score =  306 bits (783), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 154/220 (70%), Positives = 174/220 (79%), Gaps = 7/220 (3%)

Query: 67  LLPKPTRPAHSSIAGVQK------GAASACIVCARSQDDDYHATIKALNSKGRFPRKSLG 120
           LL +  +PAH S AGV+        +  +     RS DD YHAT+KALNSKGRFPRKSLG
Sbjct: 19  LLNRHHKPAHDSTAGVRNRTPYVVSSERSSTASTRSADD-YHATLKALNSKGRFPRKSLG 77

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           QHYMLN++INDQLA AA V++GD+VLEIGPGTGSLTNVLLN+GA VLA+EKD+HM  LV 
Sbjct: 78  QHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVLLNSGAFVLAVEKDKHMAALVS 137

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
           ERF+S  +LKVL ED VKCH+RSHM SL       S  AKVVANIPFNISTDVIK LLPM
Sbjct: 138 ERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSINPESRKAKVVANIPFNISTDVIKLLLPM 197

Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
           GDIFSEVVLLLQEETA+RLV  SLRT EYRP+N+FVNFYS
Sbjct: 198 GDIFSEVVLLLQEETAVRLVVSSLRTPEYRPVNVFVNFYS 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432199|ref|XP_004133887.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Cucumis sativus]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/185 (78%), Positives = 165/185 (89%), Gaps = 3/185 (1%)

Query: 99  DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
           DDYH+TI+ALNSKGR PRKSLGQHYMLNS IN+QLAAAA V+EGD+VLEIGPGTGSLTNV
Sbjct: 59  DDYHSTIRALNSKGRVPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTNV 118

Query: 159 LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF---ERRKSS 215
           L+N+GATVLA+EKD +M GLV ERFA+ ++LKVL EDFVKC++ SHM+SL    E  ++ 
Sbjct: 119 LINSGATVLAVEKDSYMAGLVDERFANTNRLKVLNEDFVKCNVSSHMMSLLKSIELSEAR 178

Query: 216 SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIF 275
           S  AKVV+NIPFNISTD+IKQLLPMGDIFSEVVLLLQEE ALRLVE SLRTSEYRPIN+F
Sbjct: 179 SQPAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEEAALRLVETSLRTSEYRPINVF 238

Query: 276 VNFYS 280
           VNFYS
Sbjct: 239 VNFYS 243

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541450|ref|XP_002511789.1| dimethyladenosine transferase, putative [Ricinus communis] gi|223548969|gb|EEF50458.1| dimethyladenosine transferase, putative [Ricinus communis]

 Score =  299 bits (765), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 150/215 (69%), Positives = 169/215 (78%), Gaps = 6/215 (2%)

Query: 70  KPTRPAHSSIAGVQKGAASACIVC-ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSE 128
           KP+ P+ + I   +K      I C  +   DDY AT+KALNS+GR PRKSLGQHYMLNSE
Sbjct: 22  KPSVPSRNGITSARKK--RVLIRCDTKRSSDDYRATLKALNSRGRRPRKSLGQHYMLNSE 79

Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQ 188
           +N+QL  AA V+EGD+VLEIGPGTGSLTN+LL+ GATVLAIEKD HM  +VRERF+  D+
Sbjct: 80  VNEQLVCAANVEEGDLVLEIGPGTGSLTNLLLDTGATVLAIEKDAHMAAIVRERFSHTDR 139

Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKS---SSGFAKVVANIPFNISTDVIKQLLPMGDIFS 245
            K+LQEDFVKCHIR HMLSL E   S       AKVVANIPFNISTDV+KQLLPMGDI S
Sbjct: 140 FKLLQEDFVKCHIRFHMLSLLENMTSLNEKPRRAKVVANIPFNISTDVVKQLLPMGDIIS 199

Query: 246 EVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
           EV LLLQEETA RLVE SLRTSEYRPIN+FVNFYS
Sbjct: 200 EVALLLQEETASRLVESSLRTSEYRPINVFVNFYS 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507115|ref|XP_003623846.1| Ribosomal RNA small subunit methyltransferase A [Medicago truncatula] gi|124360236|gb|ABN08249.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] gi|124360864|gb|ABN08836.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] gi|355498861|gb|AES80064.1| Ribosomal RNA small subunit methyltransferase A [Medicago truncatula]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 142/200 (71%), Positives = 160/200 (80%), Gaps = 10/200 (5%)

Query: 91  IVCARSQD-------DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGD 143
           + C R  +       DDYHAT+KALNSKGR P+KSLGQ+YMLNS+IN+QL   A V+EGD
Sbjct: 46  VACGRGNNRASTTNKDDYHATLKALNSKGRSPKKSLGQNYMLNSDINEQLVGVAGVEEGD 105

Query: 144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203
           +VLEIGPGTGSLTN L+N+GA VLA+EKD+HM  LV ERF+S  +LKVL ED VKCH+RS
Sbjct: 106 VVLEIGPGTGSLTNTLINSGAFVLAVEKDKHMAALVSERFSSTGKLKVLNEDIVKCHVRS 165

Query: 204 HMLSLF---ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
           H+ SL    E   S +  AKVVANIPF ISTDVIK LLPMGDIFSEVVLLLQEETALR V
Sbjct: 166 HISSLVGSTEDIDSDTRKAKVVANIPFYISTDVIKLLLPMGDIFSEVVLLLQEETALRWV 225

Query: 261 EPSLRTSEYRPINIFVNFYS 280
           EPSLRT EYRPINIFVNFYS
Sbjct: 226 EPSLRTPEYRPINIFVNFYS 245

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2025437	343	PFC1 "PALEFACE 1" [Arabidopsis	0.676	0.553	0.772	8.1e-76
TIGR_CMR|GSU_1864	276	GSU_1864 "dimethyladenosine tr	0.555	0.565	0.327	4e-19
TAIR|locus:2155031	380	DIM1B "adenosine dimethyl tran	0.480	0.355	0.381	2.4e-18
TAIR|locus:2061982	353	DIM1A "AT2G47420" [Arabidopsis	0.462	0.368	0.374	1.7e-14
TIGR_CMR|BA_0039	292	BA_0039 "dimethyladenosine tra	0.565	0.544	0.283	1.3e-13
TIGR_CMR|DET_0404	291	DET_0404 "dimethyladenosine tr	0.544	0.525	0.286	2.5e-13
DICTYBASE|DDB_G0283789	314	dimt1l "dimethyladenosine tran	0.459	0.410	0.369	4.8e-12
ASPGD|ASPL0000035233	403	AN3313 [Emericella nidulans (t	0.654	0.456	0.325	6.1e-12
TIGR_CMR|APH_0622	269	APH_0622 "dimethyladenosine tr	0.523	0.546	0.325	8.4e-12
TIGR_CMR|SPO_2458	279	SPO_2458 "dimethyladenosine tr	0.476	0.480	0.344	6.8e-11

TAIR|locus:2025437 PFC1 "PALEFACE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 149/193 (77%), Positives = 169/193 (87%)

Query:    91 IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
             + C +S  DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct:    47 VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106

Query:   151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
             GTGSLTNVL+N GATVLAIEKD HMV LV ERFA  D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct:   107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166

Query:   211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
              R+ S   S  AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct:   167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226

Query:   268 EYRPINIFVNFYS 280
             EYRPINI +NFYS
Sbjct:   227 EYRPINILINFYS 239

GO:0000154 "rRNA modification" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

GO:0009409 "response to cold" evidence=IMP

GO:0016422 "mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity" evidence=ISS

TIGR_CMR|GSU_1864 GSU_1864 "dimethyladenosine transferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 54/165 (32%), Positives = 94/165 (56%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
             RK+LGQ+++ +  +  ++AA  +   G+ +LEIGPG G+LT+ L      ++A+E D  +
Sbjct:     9 RKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEQAGQLVAVELDDRL 68

Query:   176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
             V L+R  FA    + +++ D +   +R  +      R  +  + KV AN+P+NIST V+ 
Sbjct:    69 VPLLRGSFAGNPSVTIIEGDILDLDLRETL-----GRYGTPPW-KVAANLPYNISTPVLF 122

Query:   236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFY 279
             +LL   D+FS +VL+LQ+E   RL   P   + EY  +++    +
Sbjct:   123 RLLDARDLFSRLVLMLQKEVGNRLAAGPG--SKEYGVLSVLFQLH 165

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TAIR|locus:2155031 DIM1B "adenosine dimethyl transferase 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 58/152 (38%), Positives = 88/152 (57%)

Query:   112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
             G F  KS GQH + N+ I D +  ++ ++  D VLEIGPGTG+LT  LL A   V+A+E 
Sbjct:    60 GLFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVEL 119

Query:   172 DQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
             D+ MV ++R+R +     D+L ++Q+D +K     H             F  VVANIP+N
Sbjct:   120 DKRMVEILRKRVSDHGFADKLTIIQKDVLKTDF-PH-------------FDLVVANIPYN 165

Query:   229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
             IS+ ++ +L+   + F    LLLQ+E + RL+
Sbjct:   166 ISSPLVAKLVYGSNTFRSATLLLQKEFSRRLL 197

GO:0000154 "rRNA modification" evidence=IEA;IGI;ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA;IGI;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA;ISS

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046085 "adenosine metabolic process" evidence=IMP

TAIR|locus:2061982 DIM1A "AT2G47420" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 55/147 (37%), Positives = 79/147 (53%)

Query:   117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
             KS GQH + N  + D +   A ++  D++LEIGPGTG+LT  LL AG  V+A+E D  MV
Sbjct:    30 KSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKEVIAVELDSRMV 89

Query:   177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
               ++ RF      ++LKV+Q D +K  +                F   VANIP+ IS+ +
Sbjct:    90 LELQRRFQGTPFSNRLKVIQGDVLKTELPR--------------FDICVANIPYQISSPL 135

Query:   234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
               +LL     F   V++ Q E A+RLV
Sbjct:   136 TFKLLFHPTSFRCAVIMYQREFAMRLV 162

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS;IMP

GO:0005737 "cytoplasm" evidence=ISM

GO:0008649 "rRNA methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0001708 "cell fate specification" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0051301 "cell division" evidence=IMP

TIGR_CMR|BA_0039 BA_0039 "dimethyladenosine transferase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 190 (71.9 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 47/166 (28%), Positives = 88/166 (53%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
             +KSLGQ++++++ + +++   A +      +EIGPG G+LT  L      V+A E DQ +
Sbjct:    22 KKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 81

Query:   176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
             + ++ E  A    + V+ +D +K  +       FE  +       VVAN+P+ I+T ++ 
Sbjct:    82 LPILDETLAPYGNVTVINKDVLKADVHEVFSEQFEEGQD----VMVVANLPYYITTPILF 137

Query:   236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
             +LL         V+++Q+E   RL  +P   T EY  ++I + +Y+
Sbjct:   138 KLLEEKLPVRGFVVMMQKEVGDRLAAKPG--TKEYGSLSIAIQYYT 181

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|DET_0404 DET_0404 "dimethyladenosine transferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 188 (71.2 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 47/164 (28%), Positives = 89/164 (54%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
             RK LGQH++++  + +++  AA ++  D V+E+GPG G LT  L+     V+A+E D  +
Sbjct:    31 RKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELIKRAGQVIAVELDDKL 90

Query:   176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
             V  + E+F +    +++  D +K        S  E    +  + K+VAN+P+ I++ V++
Sbjct:    91 VTALTEKFKAYPNFRIIHSDILKT-------SPAEILGQNIPY-KLVANLPYYITSAVLR 142

Query:   236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
             Q L        +V+++Q+E A  +V    +T +   + + V FY
Sbjct:   143 QFLEAEAKPELMVVMVQKEVAKNMVA---QTGDMGLLTLSVRFY 183

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

DICTYBASE|DDB_G0283789 dimt1l "dimethyladenosine transferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 180 (68.4 bits), Expect = 4.8e-12, P = 4.8e-12
 Identities = 54/146 (36%), Positives = 77/146 (52%)

Query:   117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
             KS GQH + N  I D +   + ++  D VLEIGPGTG+LT  LL     V+AIE D  M 
Sbjct:    31 KSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLENCKKVIAIEVDPRMA 90

Query:   177 GLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
               +++R A+      L+++  DF+K       L  F+           VAN+P+ IS+ +
Sbjct:    91 AELQKRVAASPYAQHLQIILGDFLKVD-----LPYFD---------VCVANVPYQISSPL 136

Query:   234 IKQLLPMGDIFSEVVLLLQEETALRL 259
               +LL    IF   VL+ Q+E ALRL
Sbjct:   137 TFKLLAHRPIFRTAVLMFQKEFALRL 162

GO:0031167 "rRNA methylation" evidence=IEA

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0000154 "rRNA modification" evidence=IEA

GO:0052909 "18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

ASPGD|ASPL0000035233 AN3313 [Emericella nidulans (taxid:162425)]

 Score = 182 (69.1 bits), Expect = 6.1e-12, P = 6.1e-12
 Identities = 66/203 (32%), Positives = 98/203 (48%)

Query:    83 QKGA-ASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQE 141
             +K A ASA      S+ D   A  KA ++  +F    LGQH + N  I D +   A VQ 
Sbjct:     7 KKSARASASPYQKPSKGDGRSAAAKAGSAIFKF-NTDLGQHILKNGAIADNIVDKANVQP 65

Query:   142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ---EDFVK 198
                VLE+GPG G LT  +L     V+A+E D  M   + +R  +    K LQ    DF+K
Sbjct:    66 SQTVLEVGPGPGILTTRILEKAKKVVAVEFDPRMAAELTKRVQATPMEKKLQIVLGDFIK 125

Query:   199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR 258
               +    L  F+           ++N P+ IS+ +I +LL M +     VL++Q E ALR
Sbjct:   126 TDLSK--LPPFQ---------VCISNTPYQISSPLIFKLLSMPNPPKMCVLMVQREFALR 174

Query:   259 LV-EPSLRTSEYRPINIFVNFYS 280
             L+  P    + Y  +++ V F+S
Sbjct:   175 LLARPG--DALYSRLSVNVQFFS 195

GO:0006547 "histidine metabolic process" evidence=RCA

GO:0008168 "methyltransferase activity" evidence=RCA

GO:0000154 "rRNA modification" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0030686 "90S preribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005819 "spindle" evidence=IEA

TIGR_CMR|APH_0622 APH_0622 "dimethyladenosine transferase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 175 (66.7 bits), Expect = 8.4e-12, P = 8.4e-12
 Identities = 54/166 (32%), Positives = 93/166 (56%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
             +KSLGQ ++L+  I +++ + A   E   V+E+GPG G +T  +LN     L AIEKD+ 
Sbjct:     9 KKSLGQCFILDPAIAEKIVSYAGCLEQYNVIEVGPGLGIMTQSILNKEVRRLTAIEKDRR 68

Query:   175 MVGL---VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
             +  +   ++E  A  D    + ED +  +I        E+  S S   K+++N+P+NIS 
Sbjct:    69 LSNIHSKLKEAHAEYD---CIFEDILDVNI--------EQLLSQSPL-KMISNLPYNISV 116

Query:   232 DVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFV 276
              ++ +LLP    F +++L+ Q+E A R+V +P+  T  Y  ++I V
Sbjct:   117 ILLLKLLPYIHRFEKLILMFQKEVADRIVAQPN--TKSYSILSILV 160

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|SPO_2458 SPO_2458 "dimethyladenosine transferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 169 (64.5 bits), Expect = 6.8e-11, P = 6.8e-11
 Identities = 52/151 (34%), Positives = 82/151 (54%)

Query:   116 RKSLGQHYMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQ 173
             RKSLGQ+++L+  +  ++A  A  + E D VLEIGPG G LT  LL  GA  VLAIEKD 
Sbjct:    22 RKSLGQNFLLDLNLTAKIARQAGDLSECD-VLEIGPGPGGLTRGLLAEGARRVLAIEKDA 80

Query:   174 HMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
               +  + E  A+   +L+V+  D ++    +HM              ++ AN+P+N+ T+
Sbjct:    81 RCLPALAEIAAAYSGRLEVINGDALEIDPLAHMTPPI----------RIAANLPYNVGTE 130

Query:   233 VIKQLLPMGD---IFSEVVLLLQEETALRLV 260
             ++ + L   D    +  + L+ Q E A R+V
Sbjct:   131 LLVRWLTPRDWPPFWQSLTLMFQREVAERIV 161

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.182	LOW CONFIDENCE prediction!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PFC1	PFC1 (PALEFACE 1); mRNA (2'-O-methyladenosine-N6-)-methyltransferase; dimethyladenosine transferase (343 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ATCDPMEK	ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE); 4-(cytidine 5'-diphospho)-2- [...] (383 aa)	•						•		0.803
	OVA1	OVA1 (OVULE ABORTION 1); ATP binding / aminoacyl-tRNA ligase/ methionine-tRNA ligase/ nucleotid [...] (616 aa)	•						•		0.797
	pde194	pde194 (pigment defective 194); catalytic/ formyltetrahydrofolate deformylase/ hydroxymethyl-, [...] (355 aa)	•			•			•		0.794
	ERS	ERS (GLUTAMATE TRNA SYNTHETASE); glutamate-tRNA ligase; Glutamate-tRNA ligase. Targeted to mito [...] (570 aa)	•						•		0.685
	RPOB	unknown protein; Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this [...] (1072 aa)							•		0.663
	SVR1	SVR1 (SUPPRESSOR OF VARIEGATION 1); RNA binding / pseudouridine synthase; Suppressor of var2 va [...] (410 aa)	•						•		0.645
	AT5G27470	seryl-tRNA synthetase / serine--tRNA ligase; seryl-tRNA synthetase / serine--tRNA ligase; FUNCT [...] (451 aa)	•						•		0.630
	emb2768	emb2768 (EMBRYO DEFECTIVE 2768); ATP binding / RNA binding / aminoacyl-tRNA ligase/ nucleotide [...] (511 aa)	•						•		0.629
	AT1G76050	pseudouridine synthase family protein; pseudouridine synthase family protein; FUNCTIONS IN- pse [...] (430 aa)	•			•			•		0.628
	AT1G78010	tRNA modification GTPase, putative; tRNA modification GTPase, putative; FUNCTIONS IN- GTP bindi [...] (560 aa)	•			•			•		0.608

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
smart00650	169	smart00650, rADc, Ribosomal RNA adenine dimethylas	1e-41
COG0030	259	COG0030, KsgA, Dimethyladenosine transferase (rRNA	4e-40
PRK00274	272	PRK00274, ksgA, 16S ribosomal RNA methyltransferas	2e-35
TIGR00755	253	TIGR00755, ksgA, dimethyladenosine transferase	5e-34
pfam00398	254	pfam00398, RrnaAD, Ribosomal RNA adenine dimethyla	3e-29
PRK14896	258	PRK14896, ksgA, 16S ribosomal RNA methyltransferas	2e-28
PTZ00338	294	PTZ00338, PTZ00338, dimethyladenosine transferase-	6e-25
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-05
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	8e-05
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	1e-04
COG3963	194	COG3963, COG3963, Phospholipid N-methyltransferase	2e-04
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	2e-04
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	7e-04
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	0.001
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	0.002
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	0.003

>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases

 Score =  140 bits (356), Expect = 1e-41
 Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 13/151 (8%)

Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQ 188
           + D++  AA ++ GD VLEIGPG G+LT  LL     V AIE D  +   +RE+FA+ D 
Sbjct: 1   VIDKIVRAANLRPGDTVLEIGPGKGALTEELLERAKRVTAIEIDPRLAPRLREKFAAADN 60

Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVV 248
           L V+  D +K  +                  KVV N+P+NIST ++ +LL     F + V
Sbjct: 61  LTVIHGDALKFDLPKL------------QPYKVVGNLPYNISTPILFKLLEEPPAFRDAV 108

Query: 249 LLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
           L++Q+E A RL      + +Y  +++ +  Y
Sbjct: 109 LMVQKEVARRLAAKPG-SKDYGRLSVLLQPY 138

Length = 169

>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

 Score =  139 bits (353), Expect = 4e-40
 Identities = 62/166 (37%), Positives = 98/166 (59%), Gaps = 14/166 (8%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
           P K LGQ+++++  + D++  AA +  GD VLEIGPG G+LT  LL   A V AIE D+ 
Sbjct: 4   PNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRR 63

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +  +++ERFA  D L V+  D +K               S +   KVVAN+P+NIS+ ++
Sbjct: 64  LAEVLKERFAPYDNLTVINGDALK-----------FDFPSLAQPYKVVANLPYNISSPIL 112

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
            +LL    I  ++VL++Q+E A RLV +P   + +Y  +++ V +Y
Sbjct: 113 FKLLEEKFIIQDMVLMVQKEVAERLVAKPG--SKDYGRLSVLVQYY 156

Length = 259

>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

 Score =  127 bits (322), Expect = 2e-35
 Identities = 61/177 (34%), Positives = 100/177 (56%), Gaps = 16/177 (9%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
           T + L   G   +KSLGQ+++++  I D++  AA  Q GD VLEIGPG G+LT  LL   
Sbjct: 5   TRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA 64

Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
           A V A+E D+ +  ++ E FA  D L +++ D +K           +  +      KVVA
Sbjct: 65  AKVTAVEIDRDLAPILAETFAE-DNLTIIEGDALK----------VDLSELQP--LKVVA 111

Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
           N+P+NI+T ++  LL   D   ++V+++Q+E A R+V +P   +  Y  +++ V +Y
Sbjct: 112 NLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIVAKPG--SKAYGRLSVLVQYY 166

Length = 272

>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase

 Score =  123 bits (311), Expect = 5e-34
 Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 15/167 (8%)

Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
            PRKSLGQ+++++  +  ++  AA V EGD+VLEIGPG G+LT  LL     V AIE D+
Sbjct: 2   RPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDR 61

Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
            +   +R+  +  + L++++ D +K                     KVV+N+P+NIS+ +
Sbjct: 62  RLAERLRKLLSLYENLEIIEGDALK-----------VDLNEFPKQLKVVSNLPYNISSPL 110

Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
           I +LL   D F   VL++Q+E A RL  +P   + +Y  +++ V ++
Sbjct: 111 IFKLL-EKDKFRLAVLMVQKEVAERLTAKPG--SKDYGRLSVLVQYF 154

In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]. Length = 253

>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase

 Score =  110 bits (278), Expect = 3e-29
 Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 13/154 (8%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
            R+  GQ+++ N ++ +++   A +QE D VLEIGPG G+LT  L      V+AIE D  
Sbjct: 3   GRRKYGQNFLTNPKVINRIVDKANLQESDTVLEIGPGKGALTTELAKRAKQVVAIEIDPR 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +   ++E+ A    ++V+ +DF+K        S  +          VV NIP+NI+T ++
Sbjct: 63  LAKRLQEKLALHPNVEVVHQDFLK-------FSFPKDDP-----FLVVGNIPYNITTPIV 110

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTS 267
           K+LL       +++L++Q+E A RL+  P +R+ 
Sbjct: 111 KKLLFESRFGVKMLLVVQKEFARRLLARPKIRSR 144

Length = 254

>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

 Score =  109 bits (274), Expect = 2e-28
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 17/165 (10%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
             K LGQH++++  + D++   A   +GD VLEIGPG G+LT+ L      V AIE D  
Sbjct: 3   MNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPR 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +   +R+   +   +++++ D +K  +                F KVV+N+P+ IS+ + 
Sbjct: 63  LAEFLRDDEIAAGNVEIIEGDALKVDLPE--------------FNKVVSNLPYQISSPIT 108

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
            +LL  G  F   VL+ Q+E A R+V     T EY  +++ V +Y
Sbjct: 109 FKLLKHG--FEPAVLMYQKEFAERMVAKP-GTKEYGRLSVMVQYY 150

Length = 258

>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein; Provisional

 Score =  100 bits (251), Expect = 6e-25
 Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 17/147 (11%)

Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
           K  GQH + N  + D++   AA++  D VLEIGPGTG+LT  LL     V+AIE D  MV
Sbjct: 12  KKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMV 71

Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
             +++RF +     +L+V++ D +K        + F        F   VAN+P+ IS+ +
Sbjct: 72  AELKKRFQNSPLASKLEVIEGDALK--------TEFPY------FDVCVANVPYQISSPL 117

Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
           + +LL    +F   VL+ Q+E ALRL+
Sbjct: 118 VFKLLAHRPLFRCAVLMFQKEFALRLL 144

Length = 294

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRER--FASIDQLKVLQEDF 196
            G  VL+IG GTGSL   L     GA V  ++    M+ L RE    A   ++  +Q D 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFA 184
              AVQ GD VL++G G G+    L   +     V+ I++ + M+ L +ER A
Sbjct: 13  ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA 65

Length = 241

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID----Q 188
           LA  A  ++GD VLE+G G+G +  V    G  V+ ++ + + V   +      +     
Sbjct: 15  LAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNG 74

Query: 189 LKVLQEDFVKC 199
           ++V++ D  + 
Sbjct: 75  VEVIRSDLFEP 85

Length = 188

>gnl|CDD|226472 COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQL 189
           +A+    + G  VLE+GPGTG +T  +L+ G    ++ AIE     V  + + +  ++ +
Sbjct: 40  MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNII 99

Query: 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV-VANIPFNISTDVIKQLL 238
                      +R+  L   + +   S  + + + N P +    +++ LL
Sbjct: 100 NGDAF-----DLRTT-LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLL 143

Length = 194

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLK 190
           +     ++ GD VLEIG G+G    VL      V++IE+ + +    R    +   + + 
Sbjct: 64  MLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVT 123

Query: 191 VLQED 195
           V   D
Sbjct: 124 VRHGD 128

Length = 209

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 21/147 (14%)

Query: 140 QEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQE 194
           + G  VL++G GTG LT +L   L  GA V+ I+  +  +   +E       + ++ +Q 
Sbjct: 2   KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQG 61

Query: 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEE 254
           D         +  L + +   + F  V++N   N   D          +  E++ +L+  
Sbjct: 62  D---------IEELPQLQLEDNSFDVVISNEVLNHLPD-------PDKVLEEIIRVLKPG 105

Query: 255 TALRLVEPSLRTSEYRPINIFVNFYSG 281
             L + +P L +     +      Y+G
Sbjct: 106 GVLIVSDPVLLSELPALLEDLERLYAG 132

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201
           L+IG GTG+L   LL A  G     ++     +    ER A++  L  ++        
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDA 58

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 6/78 (7%)

Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLT---NVLLNAGATVLAIEKDQHMVGLVR 180
           M   EI     +   +++GD++L+IG GTGS+T   ++L+     V A++KD+  + L R
Sbjct: 23  MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR 82

Query: 181 ---ERFASIDQLKVLQED 195
              E+F  ++ + +++ +
Sbjct: 83  RNAEKFGVLNNIVLIKGE 100

Length = 198

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRE 181
           M   EI     +    + GD + +IG GTGS+T     AG    V+AIE+D+  + L+  
Sbjct: 17  MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER 76

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	99.96
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.96
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.95
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.93
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.93
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.92
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	99.92
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	99.9
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.64
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.62
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.6
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.6
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.58
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.58
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.55
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.54
PHA03412	241	putative methyltransferase; Provisional	99.54
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.51
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.47
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.45
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.45
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.45
PLN02244	340	tocopherol O-methyltransferase	99.44
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.44
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.44
COG4123	248	Predicted O-methyltransferase [General function pr	99.44
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.43
PRK14967	223	putative methyltransferase; Provisional	99.43
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.43
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.42
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.41
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.41
PRK11207	197	tellurite resistance protein TehB; Provisional	99.41
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.4
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.4
PHA03411	279	putative methyltransferase; Provisional	99.39
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	99.38
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.38
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.36
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.36
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.36
COG2890	280	HemK Methylase of polypeptide chain release factor	99.35
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.35
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.34
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.34
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.34
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.34
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.33
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.33
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.33
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.33
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.32
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.31
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.31
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.3
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.3
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.3
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.29
PRK14968	188	putative methyltransferase; Provisional	99.29
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.29
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.29
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.28
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.27
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.27
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.26
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.25
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.25
PLN02336	475	phosphoethanolamine N-methyltransferase	99.24
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.24
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.24
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.24
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.23
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.23
KOG1271	227	consensus Methyltransferases [General function pre	99.23
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.23
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.23
PRK12335	287	tellurite resistance protein TehB; Provisional	99.22
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.21
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.21
PRK05785	226	hypothetical protein; Provisional	99.21
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.21
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.2
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.2
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.2
PRK04266	226	fibrillarin; Provisional	99.2
PRK07402	196	precorrin-6B methylase; Provisional	99.2
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.19
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.19
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.19
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.19
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.18
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.18
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.17
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.17
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.16
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.15
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.15
PLN02336	475	phosphoethanolamine N-methyltransferase	99.15
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.15
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.15
PLN02490	340	MPBQ/MSBQ methyltransferase	99.13
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.13
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.13
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.13
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.12
PRK08317	241	hypothetical protein; Provisional	99.12
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.11
COG4122	219	Predicted O-methyltransferase [General function pr	99.11
PLN02672	1082	methionine S-methyltransferase	99.1
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.1
PRK06922	677	hypothetical protein; Provisional	99.1
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.1
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.09
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.09
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.09
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	99.09
PRK04148	134	hypothetical protein; Provisional	99.08
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.08
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.08
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.07
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.06
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.05
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.04
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.04
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.04
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.04
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.02
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.02
PRK06202	232	hypothetical protein; Provisional	99.02
PLN02476	278	O-methyltransferase	99.02
KOG2904	328	consensus Predicted methyltransferase [General fun	99.01
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.01
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.98
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.98
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.97
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.97
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.97
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.96
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.96
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.96
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.95
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.94
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.93
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.93
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.92
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.92
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.92
PRK00811	283	spermidine synthase; Provisional	98.92
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.91
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.9
PRK04457	262	spermidine synthase; Provisional	98.9
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.89
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.89
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.86
PLN03075	296	nicotianamine synthase; Provisional	98.86
PTZ00146	293	fibrillarin; Provisional	98.86
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.85
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.84
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.84
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.83
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.82
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.82
TIGR03438	301	probable methyltransferase. This model represents	98.81
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.8
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.8
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.77
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.77
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.76
TIGR00438	188	rrmJ cell division protein FtsJ.	98.76
COG2520	341	Predicted methyltransferase [General function pred	98.75
PLN02366	308	spermidine synthase	98.75
PRK01581	374	speE spermidine synthase; Validated	98.73
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.72
PRK03612	521	spermidine synthase; Provisional	98.71
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.7
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.68
COG2521	287	Predicted archaeal methyltransferase [General func	98.64
KOG4300	252	consensus Predicted methyltransferase [General fun	98.64
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.64
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.62
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.62
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.62
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.62
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.6
PRK10742	250	putative methyltransferase; Provisional	98.58
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.53
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.47
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.41
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.39
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.39
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.38
KOG2730	263	consensus Methylase [General function prediction o	98.36
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.35
PLN02823	336	spermine synthase	98.32
KOG2671	421	consensus Putative RNA methylase [Replication, rec	98.32
COG0286	489	HsdM Type I restriction-modification system methyl	98.29
COG4076	252	Predicted RNA methylase [General function predicti	98.28
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.24
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.24
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.19
KOG3010	261	consensus Methyltransferase [General function pred	98.17
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.17
KOG2361	264	consensus Predicted methyltransferase [General fun	98.13
PF13679	141	Methyltransf_32: Methyltransferase domain	98.01
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.95
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.95
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.94
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.85
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.84
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.83
COG3897	218	Predicted methyltransferase [General function pred	97.74
PRK00536	262	speE spermidine synthase; Provisional	97.73
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.71
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.71
KOG2899	288	consensus Predicted methyltransferase [General fun	97.69
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.69
KOG2940	325	consensus Predicted methyltransferase [General fun	97.61
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.61
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.61
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.6
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.55
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.54
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.53
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.52
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.51
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.45
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.39
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.34
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.33
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.3
PRK11524	284	putative methyltransferase; Provisional	97.22
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.19
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.16
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.1
COG3129	292	Predicted SAM-dependent methyltransferase [General	97.09
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.07
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.07
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.02
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	96.99
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.99
PRK13699	227	putative methylase; Provisional	96.96
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.89
PHA01634	156	hypothetical protein	96.88
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	96.84
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.83
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.83
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.8
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.79
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.78
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.76
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.71
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.69
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.65
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.57
KOG2078	495	consensus tRNA modification enzyme [RNA processing	96.51
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.48
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.46
TIGR00497	501	hsdM type I restriction system adenine methylase (	96.36
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.31
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.24
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	96.2
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.19
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.1
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.94
PRK10458	467	DNA cytosine methylase; Provisional	95.83
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	95.63
KOG2912	419	consensus Predicted DNA methylase [Function unknow	95.44
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.39
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	95.32
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	95.27
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	95.06
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	94.99
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	94.9
KOG1227	351	consensus Putative methyltransferase [General func	94.87
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	94.75
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	94.61
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	94.6
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.47
KOG3115	249	consensus Methyltransferase-like protein [General	94.45
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	94.43
COG1565	370	Uncharacterized conserved protein [Function unknow	94.3
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	94.02
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	94.02
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	93.96
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	93.69
COG1568	354	Predicted methyltransferases [General function pre	93.31
PRK12829	264	short chain dehydrogenase; Provisional	93.14
PRK08339	263	short chain dehydrogenase; Provisional	92.96
COG0863	302	DNA modification methylase [DNA replication, recom	92.88
PRK05867	253	short chain dehydrogenase; Provisional	92.84
KOG1331	293	consensus Predicted methyltransferase [General fun	92.78
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	92.72
PRK08340	259	glucose-1-dehydrogenase; Provisional	92.69
PRK06172	253	short chain dehydrogenase; Provisional	92.68
PRK09072	263	short chain dehydrogenase; Provisional	92.65
PRK07063	260	short chain dehydrogenase; Provisional	92.54
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.48
KOG2360	413	consensus Proliferation-associated nucleolar prote	92.39
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	92.31
PRK07890	258	short chain dehydrogenase; Provisional	92.14
PLN02253	280	xanthoxin dehydrogenase	92.08
PRK06124	256	gluconate 5-dehydrogenase; Provisional	91.99
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	91.99
PRK07326	237	short chain dehydrogenase; Provisional	91.98
PRK07024	257	short chain dehydrogenase; Provisional	91.91
PRK07523	255	gluconate 5-dehydrogenase; Provisional	91.9
PRK07454	241	short chain dehydrogenase; Provisional	91.89
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	91.85
PRK07478	254	short chain dehydrogenase; Provisional	91.84
PRK06139	330	short chain dehydrogenase; Provisional	91.83
PRK07677	252	short chain dehydrogenase; Provisional	91.83
PRK05876	275	short chain dehydrogenase; Provisional	91.76
PRK06194	287	hypothetical protein; Provisional	91.67
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.58
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	91.49
PRK06949	258	short chain dehydrogenase; Provisional	91.48
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.36
PRK08862	227	short chain dehydrogenase; Provisional	91.34
PRK08267	260	short chain dehydrogenase; Provisional	91.31
PRK05866	293	short chain dehydrogenase; Provisional	91.3
PRK05872	296	short chain dehydrogenase; Provisional	91.28
PRK08213	259	gluconate 5-dehydrogenase; Provisional	91.24
PRK07109	334	short chain dehydrogenase; Provisional	91.23
PRK07097	265	gluconate 5-dehydrogenase; Provisional	91.21
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.1
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	91.06
COG1255	129	Uncharacterized protein conserved in archaea [Func	91.03
PRK07035	252	short chain dehydrogenase; Provisional	90.99
PRK08277	278	D-mannonate oxidoreductase; Provisional	90.99
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	90.98
PRK05854	313	short chain dehydrogenase; Provisional	90.83
PRK07814	263	short chain dehydrogenase; Provisional	90.83
PRK08589	272	short chain dehydrogenase; Validated	90.79
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	90.75
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.74
PRK08226	263	short chain dehydrogenase; Provisional	90.74
PRK08643	256	acetoin reductase; Validated	90.65
PRK06138	252	short chain dehydrogenase; Provisional	90.64
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	90.51
PRK07904	253	short chain dehydrogenase; Provisional	90.49
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	90.42
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	90.33
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	90.29
PRK05650	270	short chain dehydrogenase; Provisional	90.28
PRK09242	257	tropinone reductase; Provisional	90.27
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	90.23
PRK07062	265	short chain dehydrogenase; Provisional	90.13
PRK07791	286	short chain dehydrogenase; Provisional	90.1
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	90.1
PRK08303	305	short chain dehydrogenase; Provisional	90.05
PRK07774	250	short chain dehydrogenase; Provisional	89.92
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	89.84
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	89.79
PRK06196	315	oxidoreductase; Provisional	89.76
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	89.52
PRK08085	254	gluconate 5-dehydrogenase; Provisional	89.5
PRK08265	261	short chain dehydrogenase; Provisional	89.49
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	89.38
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.23
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	89.14
PRK07453	322	protochlorophyllide oxidoreductase; Validated	89.12
PRK12939	250	short chain dehydrogenase; Provisional	89.03
PRK06181	263	short chain dehydrogenase; Provisional	88.96
PRK06125	259	short chain dehydrogenase; Provisional	88.88
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	88.78
PRK06720	169	hypothetical protein; Provisional	88.61
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	88.61
KOG2920	282	consensus Predicted methyltransferase [General fun	88.59
PRK07576	264	short chain dehydrogenase; Provisional	88.58
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	88.55
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	88.44
PRK07831	262	short chain dehydrogenase; Provisional	88.24
PRK06197	306	short chain dehydrogenase; Provisional	88.06
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.0
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	87.99
PRK05717	255	oxidoreductase; Validated	87.95
PRK06500	249	short chain dehydrogenase; Provisional	87.91
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	87.48
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	87.46
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	87.43
KOG3924	419	consensus Putative protein methyltransferase invol	87.39
PRK07067	257	sorbitol dehydrogenase; Provisional	87.36
PRK05993	277	short chain dehydrogenase; Provisional	87.33
PRK08251	248	short chain dehydrogenase; Provisional	87.29
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	87.24
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	87.04
PRK07825	273	short chain dehydrogenase; Provisional	86.98
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	86.94
PRK07074	257	short chain dehydrogenase; Provisional	86.67
PRK08628	258	short chain dehydrogenase; Provisional	86.66
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	86.42
PRK06180	277	short chain dehydrogenase; Provisional	86.39
PRK08324	681	short chain dehydrogenase; Validated	86.33
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	86.24
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	86.18
PRK09186	256	flagellin modification protein A; Provisional	86.08
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	86.08
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	86.0
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	85.94
PRK06701	290	short chain dehydrogenase; Provisional	85.93
PRK06182	273	short chain dehydrogenase; Validated	85.9
PRK07102	243	short chain dehydrogenase; Provisional	85.83
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	85.82
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	85.7
PRK06940	275	short chain dehydrogenase; Provisional	85.64
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	85.59
PRK05875	276	short chain dehydrogenase; Provisional	85.51
PRK06914	280	short chain dehydrogenase; Provisional	85.5
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	85.42
PRK09496	453	trkA potassium transporter peripheral membrane com	85.37
PRK06057	255	short chain dehydrogenase; Provisional	85.36
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	85.11
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	85.05
PTZ00357	1072	methyltransferase; Provisional	85.03
PRK05855	582	short chain dehydrogenase; Validated	84.95
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	84.94
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	84.76
PLN02780	320	ketoreductase/ oxidoreductase	84.76
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	84.76
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	84.74
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	84.72
COG0300	265	DltE Short-chain dehydrogenases of various substra	84.46
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	84.45
TIGR02415	254	23BDH acetoin reductases. One member of this famil	84.43
COG2961	279	ComJ Protein involved in catabolism of external DN	84.42
KOG3350	217	consensus Uncharacterized conserved protein [Funct	84.39
PRK07806	248	short chain dehydrogenase; Provisional	84.3
PRK05599	246	hypothetical protein; Provisional	84.27
PLN03209	576	translocon at the inner envelope of chloroplast su	84.23
PRK06841	255	short chain dehydrogenase; Provisional	84.11
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	83.96
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	83.88
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	83.87
PRK06198	260	short chain dehydrogenase; Provisional	83.8
PRK03659	601	glutathione-regulated potassium-efflux system prot	83.73
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	83.57
KOG2352	482	consensus Predicted spermine/spermidine synthase [	83.52
PRK08278	273	short chain dehydrogenase; Provisional	83.48
PRK06114	254	short chain dehydrogenase; Provisional	83.13
PRK12743	256	oxidoreductase; Provisional	83.07
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	82.96
PRK06484	520	short chain dehydrogenase; Validated	82.91
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	82.86
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	82.71
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.67
PRK07201	657	short chain dehydrogenase; Provisional	82.55
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	82.52
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	82.49
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	82.34
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	82.14
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	82.12
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	82.09
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.08
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	81.9
PRK08703	239	short chain dehydrogenase; Provisional	81.84
PRK10538	248	malonic semialdehyde reductase; Provisional	81.83
KOG0725	270	consensus Reductases with broad range of substrate	81.6
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	81.56
PRK09291	257	short chain dehydrogenase; Provisional	81.44
PRK07775	274	short chain dehydrogenase; Provisional	81.37
PRK06482	276	short chain dehydrogenase; Provisional	81.24
PLN02896	353	cinnamyl-alcohol dehydrogenase	81.21
PRK06484	520	short chain dehydrogenase; Validated	81.15
COG4798	238	Predicted methyltransferase [General function pred	81.09
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	81.05
PRK11524	284	putative methyltransferase; Provisional	81.04
PRK12827	249	short chain dehydrogenase; Provisional	80.99
PRK07041	230	short chain dehydrogenase; Provisional	80.44
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	80.33
PRK09135	249	pteridine reductase; Provisional	80.07
PRK10669	558	putative cation:proton antiport protein; Provision	80.01

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=4.1e-29  Score=216.71  Aligned_cols=156  Identities=39%  Similarity=0.644  Sum_probs=146.2

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~  193 (281)
                      .+.+.+||||..++.+++.+++.+.+.+++.|||||+|.|.+|..|++.+.+|++||+|+.+++..++.....+|+++++
T Consensus         3 k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~   82 (259)
T COG0030           3 RPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVIN   82 (259)
T ss_pred             CCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEe
Confidence            34688999999999999999999999999999999999999999999999999999999999999999987667999999


Q ss_pred             cCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhh
Q 023482          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (281)
Q Consensus       194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s  273 (281)
                      +|+.+.++++.           ..++.||+|+||+++++++.++++....+..+++|+|+|++.||+ +.||++.|+++|
T Consensus        83 ~DaLk~d~~~l-----------~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~-A~pgsk~Yg~Ls  150 (259)
T COG0030          83 GDALKFDFPSL-----------AQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLV-AKPGSKDYGRLS  150 (259)
T ss_pred             CchhcCcchhh-----------cCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHh-CCCCCcccchhh
Confidence            99999987531           168999999999999999999999998888999999999999999 999999999999


Q ss_pred             hhhhhccC
Q 023482          274 IFVNFYSG  281 (281)
Q Consensus       274 ~l~~~~~~  281 (281)
                      +++|++|+
T Consensus       151 V~~q~~~~  158 (259)
T COG0030         151 VLVQYYAD  158 (259)
T ss_pred             hhhhheEE
Confidence            99999986

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.96  E-value=3.8e-28  Score=217.00  Aligned_cols=156  Identities=35%  Similarity=0.549  Sum_probs=145.0

Q ss_pred             cCCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---CC
Q 023482          111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---ID  187 (281)
Q Consensus       111 ~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~---~~  187 (281)
                      +++.+++.+||||+.++.+++.+++.+.+.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++..   .+
T Consensus         6 ~~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~   85 (294)
T PTZ00338          6 SGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLAS   85 (294)
T ss_pred             CCcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            477899999999999999999999999998999999999999999999999888999999999999999998864   35


Q ss_pred             CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCC
Q 023482          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS  267 (281)
Q Consensus       188 ~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~  267 (281)
                      +++++++|+.+.++              ..+|.|++|+||++.++++.++++....+..+++|+|+|++.|++ +.||++
T Consensus        86 ~v~ii~~Dal~~~~--------------~~~d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~QkEvA~Rl~-A~pg~k  150 (294)
T PTZ00338         86 KLEVIEGDALKTEF--------------PYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLL-AQPGDE  150 (294)
T ss_pred             cEEEEECCHhhhcc--------------cccCEEEecCCcccCcHHHHHHHhcCCCCceeeeeehHHHHHHHh-cCCCCc
Confidence            89999999988653              357999999999999999999998877889999999999999999 999999


Q ss_pred             ccchhhhhhhhccC
Q 023482          268 EYRPINIFVNFYSG  281 (281)
Q Consensus       268 ~y~~~s~l~~~~~~  281 (281)
                      .|+++||++|+||+
T Consensus       151 ~y~~LSv~~q~~~~  164 (294)
T PTZ00338        151 LYCRLSVNTQLLCR  164 (294)
T ss_pred             ccCHHHHHHHHHhc
Confidence            99999999999986

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.95  E-value=4e-27  Score=209.12  Aligned_cols=163  Identities=36%  Similarity=0.598  Sum_probs=147.5

Q ss_pred             HHHHHhcCCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Q 023482          105 IKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      .+.+..++..+++.+||+|..++.+++.+++.+.+.++++|||||||+|.++..+++.+.+|+|+|+|+.|++.+++++.
T Consensus         6 ~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~   85 (272)
T PRK00274          6 RELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA   85 (272)
T ss_pred             HHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc
Confidence            34566678899999999999999999999999998889999999999999999999998899999999999999998775


Q ss_pred             CCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCC
Q 023482          185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSL  264 (281)
Q Consensus       185 ~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~p  264 (281)
                      . ++++++++|+.++++.+            -.++.||+|+||+..++++.+++.....+..+++|+|+|+|.|++ +.|
T Consensus        86 ~-~~v~~i~~D~~~~~~~~------------~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~-a~p  151 (272)
T PRK00274         86 E-DNLTIIEGDALKVDLSE------------LQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIV-AKP  151 (272)
T ss_pred             c-CceEEEEChhhcCCHHH------------cCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHc-CCC
Confidence            4 68999999999987532            115899999999999999999997766688999999999999999 999


Q ss_pred             CCCccchhhhhhhhccC
Q 023482          265 RTSEYRPINIFVNFYSG  281 (281)
Q Consensus       265 g~~~y~~~s~l~~~~~~  281 (281)
                      |++.|+++|+++|+||+
T Consensus       152 g~~~y~~lSv~~~~~~~  168 (272)
T PRK00274        152 GSKAYGRLSVLVQYYCD  168 (272)
T ss_pred             CCccccHHHHHHHHHcc
Confidence            99999999999999986

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.93  E-value=3.5e-25  Score=195.23  Aligned_cols=151  Identities=34%  Similarity=0.589  Sum_probs=137.7

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~  193 (281)
                      .+++.+||||..++.+++.+++.+...++++|||||||+|.++..+++.+.+|+|+|+++.+++.+++++...+++++++
T Consensus         2 ~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~   81 (258)
T PRK14896          2 RMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIE   81 (258)
T ss_pred             CCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEE
Confidence            46789999999999999999999998889999999999999999999998899999999999999998886556899999


Q ss_pred             cCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhh
Q 023482          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (281)
Q Consensus       194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s  273 (281)
                      +|+.++++              ..+|.|++|+||++.++++.+++.  ..+..++++.|+|++.|++ +.||++.|+++|
T Consensus        82 ~D~~~~~~--------------~~~d~Vv~NlPy~i~s~~~~~l~~--~~~~~~~l~~q~e~A~rl~-a~~g~~~yg~ls  144 (258)
T PRK14896         82 GDALKVDL--------------PEFNKVVSNLPYQISSPITFKLLK--HGFEPAVLMYQKEFAERMV-AKPGTKEYGRLS  144 (258)
T ss_pred             eccccCCc--------------hhceEEEEcCCcccCcHHHHHHHh--hccceeEEEeeHHHHHHhc-CCCCCccccHHH
Confidence            99998764              236999999999999999998886  3355789999999999999 999999999999


Q ss_pred             hhhhhccC
Q 023482          274 IFVNFYSG  281 (281)
Q Consensus       274 ~l~~~~~~  281 (281)
                      ++.|++|+
T Consensus       145 v~~~~~~~  152 (258)
T PRK14896        145 VMVQYYAD  152 (258)
T ss_pred             HHHHHHee
Confidence            99999875

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.93  E-value=6.8e-25  Score=192.98  Aligned_cols=155  Identities=36%  Similarity=0.626  Sum_probs=138.7

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~  193 (281)
                      ++++.+||||..++.+++.+++.+...++++|||||||+|.++..+++.+.+|+++|+|+.+++.++.+....+++++++
T Consensus         2 ~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~   81 (253)
T TIGR00755         2 RPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIE   81 (253)
T ss_pred             CCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEE
Confidence            56789999999999999999999998889999999999999999999998899999999999999998876556999999


Q ss_pred             cCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhh
Q 023482          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (281)
Q Consensus       194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s  273 (281)
                      +|+.++++..  +|         ..+.|++|+||++..+++.+++. ...+..+++++|+|++.|++ +.||++.|+.+|
T Consensus        82 ~D~~~~~~~~--~d---------~~~~vvsNlPy~i~~~il~~ll~-~~~~~~~~~~~q~e~a~Rl~-a~pg~~~y~~ls  148 (253)
T TIGR00755        82 GDALKVDLPD--FP---------KQLKVVSNLPYNISSPLIFKLLE-KPKFRLAVLMVQKEVAERLT-AKPGSKDYGRLS  148 (253)
T ss_pred             CchhcCChhH--cC---------CcceEEEcCChhhHHHHHHHHhc-cCCCceEEEEehHHHHHHHc-cCCCCCcccHHH
Confidence            9999987531  11         11599999999999999999995 34457899999999999999 999999999999


Q ss_pred             hhhhhccC
Q 023482          274 IFVNFYSG  281 (281)
Q Consensus       274 ~l~~~~~~  281 (281)
                      +++|++|+
T Consensus       149 v~~~~~~~  156 (253)
T TIGR00755       149 VLVQYFAN  156 (253)
T ss_pred             HHHHHHcc
Confidence            99999986

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.92  E-value=2.3e-24  Score=178.40  Aligned_cols=139  Identities=38%  Similarity=0.582  Sum_probs=126.3

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHH
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      .+.+++.+.+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...++++++++|+.++++.+      
T Consensus         2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~------   75 (169)
T smart00650        2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPK------   75 (169)
T ss_pred             HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccc------
Confidence            45677888888888999999999999999999988999999999999999999876568999999999987532      


Q ss_pred             HhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhhhhhhhccC
Q 023482          210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG  281 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s~l~~~~~~  281 (281)
                            ..+|.|++|+||+...+++.++++....+..+.+++|++++.|+. +.||++.|+.+|+++|++|+
T Consensus        76 ------~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~-~~~~~~~y~~lsv~~~~~~~  140 (169)
T smart00650       76 ------LQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLA-AKPGSKDYGRLSVLLQPYFD  140 (169)
T ss_pred             ------cCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhc-CCCCCCcccHHHHHHHHHee
Confidence                  358999999999999999999998877778999999999999999 99999999999999999985

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=99.92  E-value=2.1e-24  Score=184.84  Aligned_cols=154  Identities=38%  Similarity=0.587  Sum_probs=145.2

Q ss_pred             CCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CC
Q 023482          112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQ  188 (281)
Q Consensus       112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~  188 (281)
                      +..+...+|||+..++.+++.+++...+.+++.|||||.|||.+|..|.+.+++|+|+|+|+.|++...++....   +.
T Consensus        29 ~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~k  108 (315)
T KOG0820|consen   29 GSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGK  108 (315)
T ss_pred             CcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccce
Confidence            577888999999999999999999999999999999999999999999999999999999999999999988754   38


Q ss_pred             eEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCc
Q 023482          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSE  268 (281)
Q Consensus       189 v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~  268 (281)
                      .++++||+.+.++              ..||.+|+|+||+++++++++++..+..+..+++|+|.|++.|++ +.||++.
T Consensus       109 LqV~~gD~lK~d~--------------P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLv-a~pgd~~  173 (315)
T KOG0820|consen  109 LQVLHGDFLKTDL--------------PRFDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLV-ARPGDSL  173 (315)
T ss_pred             eeEEecccccCCC--------------cccceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhhc-cCCCCch
Confidence            9999999998764              579999999999999999999999999999999999999999999 9999999


Q ss_pred             cchhhhhhhhcc
Q 023482          269 YRPINIFVNFYS  280 (281)
Q Consensus       269 y~~~s~l~~~~~  280 (281)
                      |.++|+.+|++-
T Consensus       174 Ycrlsin~q~~a  185 (315)
T KOG0820|consen  174 YCRLSINVQLLA  185 (315)
T ss_pred             hceeehhhHHhh
Confidence            999999999863

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=99.90  E-value=5e-23  Score=181.95  Aligned_cols=158  Identities=35%  Similarity=0.602  Sum_probs=141.2

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~  193 (281)
                      .++..+||||..++.+++.+++.+.+.++..|||||+|+|.+|..|++.+.+++++|+|+.+++..++.+...+++++++
T Consensus         3 k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~   82 (262)
T PF00398_consen    3 KPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVIN   82 (262)
T ss_dssp             SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEE
T ss_pred             CCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeee
Confidence            56788999999999999999999999999999999999999999999999999999999999999999888667999999


Q ss_pred             cCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCC-cceEEEeehhhHHHHhcCCCCCCCccchh
Q 023482          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI-FSEVVLLLQEETALRLVEPSLRTSEYRPI  272 (281)
Q Consensus       194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~-~~~~~~~~~~~~a~rl~~~~pg~~~y~~~  272 (281)
                      +|+.+++..+.         .......||+|+||+..++++.+++..... ...+.+++|+|++.|++ +.||++.|+++
T Consensus        83 ~D~l~~~~~~~---------~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~-a~pg~~~~~~l  152 (262)
T PF00398_consen   83 GDFLKWDLYDL---------LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLL-AKPGSKRYSRL  152 (262)
T ss_dssp             S-TTTSCGGGH---------CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHH-TSTTSTTCSHH
T ss_pred             cchhccccHHh---------hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhcc-CCCCCCccchh
Confidence            99999876431         124678999999999999999999973333 57899999999999999 99999999999


Q ss_pred             hhhhhhccC
Q 023482          273 NIFVNFYSG  281 (281)
Q Consensus       273 s~l~~~~~~  281 (281)
                      |+++|+|||
T Consensus       153 sv~~q~~~~  161 (262)
T PF00398_consen  153 SVLAQAFFD  161 (262)
T ss_dssp             HHHHHHHEE
T ss_pred             hhhhhhhhc
Confidence            999999985

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.64  E-value=9.7e-15  Score=125.40  Aligned_cols=149  Identities=19%  Similarity=0.206  Sum_probs=112.3

Q ss_pred             HHHHHhHhhhccCC-CcHHHHHHHHHhcCCC---CC-----------cccC-ccccCCHHHHHHHHHHhcCCCCCEEEEE
Q 023482           85 GAASACIVCARSQD-DDYHATIKALNSKGRF---PR-----------KSLG-QHYMLNSEINDQLAAAAAVQEGDIVLEI  148 (281)
Q Consensus        85 ~~r~~mv~~~~r~~-~~~~~~~~~~~~~~~~---~~-----------~~~g-~~~~~~~~~~~~l~~~l~~~~~~~VLDi  148 (281)
                      ..++.|++.+.+.+ .....+.+.+.+....   +.           ..++ ...+..+.....+++.+.+.++.+||||
T Consensus         5 ~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDi   84 (215)
T TIGR00080         5 SQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEI   84 (215)
T ss_pred             HHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEE
Confidence            44678999988865 5666666666644211   11           1111 2255667888999999999999999999


Q ss_pred             cCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEE
Q 023482          149 GPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (281)
Q Consensus       149 GcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~  223 (281)
                      |||+|+++..+++..   .+|+++|+++++++.|++++...+  +++++++|+.+...            ....||+|+.
T Consensus        85 G~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~------------~~~~fD~Ii~  152 (215)
T TIGR00080        85 GTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE------------PLAPYDRIYV  152 (215)
T ss_pred             CCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc------------ccCCCCEEEE
Confidence            999999999999873   369999999999999999987654  89999999977532            2357999999


Q ss_pred             cCCCcccHHHHHHhccCCCCcc
Q 023482          224 NIPFNISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       224 n~P~~~~~~~~~~ll~~~~~~~  245 (281)
                      +.+.....+.+.+.++++|.+.
T Consensus       153 ~~~~~~~~~~~~~~L~~gG~lv  174 (215)
T TIGR00080       153 TAAGPKIPEALIDQLKEGGILV  174 (215)
T ss_pred             cCCcccccHHHHHhcCcCcEEE
Confidence            8766655666677778888753

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.62  E-value=2.4e-14  Score=122.76  Aligned_cols=145  Identities=18%  Similarity=0.203  Sum_probs=110.9

Q ss_pred             HHHhHhhhccCC-CcHHHHHHHHHhcCCC---CC-------------cccCccccCCHHHHHHHHHHhcCCCCCEEEEEc
Q 023482           87 ASACIVCARSQD-DDYHATIKALNSKGRF---PR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG  149 (281)
Q Consensus        87 r~~mv~~~~r~~-~~~~~~~~~~~~~~~~---~~-------------~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiG  149 (281)
                      ++.|++.+.|.+ .....+.+.+.....+   +.             -..|+ .++.+.+...+++.+.+.++.+|||||
T Consensus         6 ~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~-~~~~p~~~~~~~~~l~~~~g~~VLdIG   84 (212)
T PRK13942          6 KRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQ-TISAIHMVAIMCELLDLKEGMKVLEIG   84 (212)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCC-EeCcHHHHHHHHHHcCCCCcCEEEEEC
Confidence            467999999866 5677777776644211   00             11233 567899999999999999999999999


Q ss_pred             CCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEc
Q 023482          150 PGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (281)
Q Consensus       150 cG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n  224 (281)
                      ||+|+++..+++.   .++|+++|+++++++.|++++...+  +++++++|+.+...            ....||+|+.+
T Consensus        85 ~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~------------~~~~fD~I~~~  152 (212)
T PRK13942         85 TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE------------ENAPYDRIYVT  152 (212)
T ss_pred             CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC------------cCCCcCEEEEC
Confidence            9999999999876   2699999999999999999987653  89999999987542            23679999887


Q ss_pred             CCCcccHHHHHHhccCCCCc
Q 023482          225 IPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       225 ~P~~~~~~~~~~ll~~~~~~  244 (281)
                      .........+...++++|.+
T Consensus       153 ~~~~~~~~~l~~~LkpgG~l  172 (212)
T PRK13942        153 AAGPDIPKPLIEQLKDGGIM  172 (212)
T ss_pred             CCcccchHHHHHhhCCCcEE
Confidence            54444445566677788865

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.60  E-value=4.6e-14  Score=120.35  Aligned_cols=110  Identities=14%  Similarity=0.208  Sum_probs=91.3

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~  196 (281)
                      .+..+.+...+++.+.+.++.+|||+|||+|+.+..+++.   +++|+++|+++++++.|++++...+   +++++++|+
T Consensus        54 ~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~  133 (205)
T PRK13944         54 TISAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG  133 (205)
T ss_pred             EechHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc
Confidence            5566778899999999888899999999999999999875   3699999999999999999887553   599999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      .+...            ..+.||+|+++.......+.+.+.+++||.+
T Consensus       134 ~~~~~------------~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~l  169 (205)
T PRK13944        134 KRGLE------------KHAPFDAIIVTAAASTIPSALVRQLKDGGVL  169 (205)
T ss_pred             ccCCc------------cCCCccEEEEccCcchhhHHHHHhcCcCcEE
Confidence            87532            2267999999877766666777778888876

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=2.3e-14  Score=117.78  Aligned_cols=132  Identities=22%  Similarity=0.306  Sum_probs=103.4

Q ss_pred             CCCCCcccCccccCCHHHHHHHHHHhc---CCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC-
Q 023482          112 GRFPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-  186 (281)
Q Consensus       112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~-  186 (281)
                      ..+++.++.| |.++..++..++..+.   .-.+.+|+|+|||||.+++..+-.|+ .|+|||+|+++++.+++|.++. 
T Consensus        14 f~~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~   92 (198)
T COG2263          14 FPNPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL   92 (198)
T ss_pred             CCCCCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC
Confidence            4567778888 9999999988887763   33677899999999999999999975 9999999999999999999865 


Q ss_pred             CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc-----cHHHHHHhccCCCCcceEEEeehhhHHHHh
Q 023482          187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-----STDVIKQLLPMGDIFSEVVLLLQEETALRL  259 (281)
Q Consensus       187 ~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-----~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl  259 (281)
                      +++.|+++|+.++.               +.+|.+|.||||..     ..+++.+.++-+..+.....--..++..+.
T Consensus        93 g~v~f~~~dv~~~~---------------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~  155 (198)
T COG2263          93 GDVEFVVADVSDFR---------------GKFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKF  155 (198)
T ss_pred             CceEEEEcchhhcC---------------CccceEEECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHHHHHH
Confidence            48999999999875               67899999999953     447777777665544443333333443333

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=5e-14  Score=118.50  Aligned_cols=111  Identities=22%  Similarity=0.374  Sum_probs=92.7

Q ss_pred             CccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482          120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (281)
Q Consensus       120 g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~  197 (281)
                      |+ ++..+.+...|++.+.+.++++|||||||+||.+..|++...+|++||+++...+.|++++...+  ||.+++||..
T Consensus        52 gq-tis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~  130 (209)
T COG2518          52 GQ-TISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGS  130 (209)
T ss_pred             Cc-eecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc
Confidence            44 88899999999999999999999999999999999999998899999999999999999998765  8999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCC-cccHHHHHHhccCCCC
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF-NISTDVIKQLLPMGDI  243 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~-~~~~~~~~~ll~~~~~  243 (281)
                      .--            .....||.|+..--. .....++++|..+|..
T Consensus       131 ~G~------------~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrl  165 (209)
T COG2518         131 KGW------------PEEAPYDRIIVTAAAPEVPEALLDQLKPGGRL  165 (209)
T ss_pred             cCC------------CCCCCcCEEEEeeccCCCCHHHHHhcccCCEE
Confidence            752            234789999986433 3445566666655443

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.58  E-value=1.5e-14  Score=124.89  Aligned_cols=115  Identities=16%  Similarity=0.231  Sum_probs=87.3

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC  199 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~  199 (281)
                      -.+..+.+.+++.+...+|.+|||+|||||.++..+++..  ++|+|+|+|+.|++.|+++..+.+  ++++++||++++
T Consensus        34 g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L  113 (238)
T COG2226          34 GLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL  113 (238)
T ss_pred             cchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence            3456678888888888789999999999999999999984  699999999999999999988643  699999999999


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCC-cccHHHHHHhccCCCCcc
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPF-NISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~-~~~~~~~~~ll~~~~~~~  245 (281)
                      ||+|++||.+.+       ..-+-|.+- ...-..+.|+++++|.+.
T Consensus       114 Pf~D~sFD~vt~-------~fglrnv~d~~~aL~E~~RVlKpgG~~~  153 (238)
T COG2226         114 PFPDNSFDAVTI-------SFGLRNVTDIDKALKEMYRVLKPGGRLL  153 (238)
T ss_pred             CCCCCccCEEEe-------eehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence            999865554321       111113331 222244568888888653

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.55  E-value=4.4e-14  Score=120.46  Aligned_cols=146  Identities=18%  Similarity=0.294  Sum_probs=101.7

Q ss_pred             HHHhHhhhccCC-CcHHHHHHHHHhcCC---CCCcc-----------cC-ccccCCHHHHHHHHHHhcCCCCCEEEEEcC
Q 023482           87 ASACIVCARSQD-DDYHATIKALNSKGR---FPRKS-----------LG-QHYMLNSEINDQLAAAAAVQEGDIVLEIGP  150 (281)
Q Consensus        87 r~~mv~~~~r~~-~~~~~~~~~~~~~~~---~~~~~-----------~g-~~~~~~~~~~~~l~~~l~~~~~~~VLDiGc  150 (281)
                      +..|++++.+.. .....+.+.+.+...   -+..+           .+ ...++.|.+..++++.+.++++.+||||||
T Consensus         2 ~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l~pg~~VLeIGt   81 (209)
T PF01135_consen    2 NKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALDLKPGDRVLEIGT   81 (209)
T ss_dssp             HHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTTC-TT-EEEEES-
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHhcCCCCEEEEecC
Confidence            467888888755 677777777765421   11111           11 236778999999999999999999999999


Q ss_pred             CccHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC
Q 023482          151 GTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       151 G~G~~t~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      |+||.+..|+.. +  .+|++||+++..++.|++++...+  |++++++|.....            .....||.|+.+.
T Consensus        82 GsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~------------~~~apfD~I~v~~  149 (209)
T PF01135_consen   82 GSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW------------PEEAPFDRIIVTA  149 (209)
T ss_dssp             TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT------------GGG-SEEEEEESS
T ss_pred             CCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc------------ccCCCcCEEEEee
Confidence            999999999987 3  379999999999999999998654  9999999987642            2336799999986


Q ss_pred             CCcccHHHHHHhccCCCCc
Q 023482          226 PFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       226 P~~~~~~~~~~ll~~~~~~  244 (281)
                      .....+..+...|+.||.+
T Consensus       150 a~~~ip~~l~~qL~~gGrL  168 (209)
T PF01135_consen  150 AVPEIPEALLEQLKPGGRL  168 (209)
T ss_dssp             BBSS--HHHHHTEEEEEEE
T ss_pred             ccchHHHHHHHhcCCCcEE
Confidence            5544444444445555554

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.54  E-value=2.8e-13  Score=116.03  Aligned_cols=150  Identities=16%  Similarity=0.211  Sum_probs=111.7

Q ss_pred             hHHHHHHhHhhhcc-CCCcHHHHHHHHHhcCCC---CCc----cc--------CccccCCHHHHHHHHHHhcCCCCCEEE
Q 023482           83 QKGAASACIVCARS-QDDDYHATIKALNSKGRF---PRK----SL--------GQHYMLNSEINDQLAAAAAVQEGDIVL  146 (281)
Q Consensus        83 ~~~~r~~mv~~~~r-~~~~~~~~~~~~~~~~~~---~~~----~~--------g~~~~~~~~~~~~l~~~l~~~~~~~VL  146 (281)
                      .++.|..|++ +++ .......+.+.+......   +..    .|        ...++..+....++++.+.+.++.+||
T Consensus         5 ~~~~~~~~v~-~l~~~~~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VL   83 (212)
T PRK00312          5 ESERFARLVL-RLRAEGILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVL   83 (212)
T ss_pred             HHHHHHHHHH-HHHHcCCCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEE
Confidence            3566888998 655 334555666666654221   111    01        112467888999999999998999999


Q ss_pred             EEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEc
Q 023482          147 EIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (281)
Q Consensus       147 DiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n  224 (281)
                      |+|||+|+++..++....+|+++|+++++++.|++++...+  +++++++|+.+..            ...+.||+|+.+
T Consensus        84 eiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~~~~~fD~I~~~  151 (212)
T PRK00312         84 EIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW------------PAYAPFDRILVT  151 (212)
T ss_pred             EECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC------------CcCCCcCEEEEc
Confidence            99999999999888876799999999999999999987653  7999999986532            122679999998


Q ss_pred             CCCcccHHHHHHhccCCCCcc
Q 023482          225 IPFNISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       225 ~P~~~~~~~~~~ll~~~~~~~  245 (281)
                      .+.......+.+.++++|.+.
T Consensus       152 ~~~~~~~~~l~~~L~~gG~lv  172 (212)
T PRK00312        152 AAAPEIPRALLEQLKEGGILV  172 (212)
T ss_pred             cCchhhhHHHHHhcCCCcEEE
Confidence            776666666777888888753

>PHA03412 putative methyltransferase; Provisional

Probab=99.54  E-value=6e-14  Score=120.44  Aligned_cols=108  Identities=14%  Similarity=0.256  Sum_probs=84.6

Q ss_pred             HHHHHHHhcCCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-----CCEEEEEeCCHHHHH
Q 023482          103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVG  177 (281)
Q Consensus       103 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-----~~~v~gvD~s~~~l~  177 (281)
                      .+.+-+.+.....+...|| |+++..++..+....  ..+.+|||+|||+|.++..+++.     ..+|++||+++.+++
T Consensus        14 f~~~n~~~~~~~~~~~~Gq-FfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~   90 (241)
T PHA03412         14 FIIENFHEGAFTNNSELGA-FFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYK   90 (241)
T ss_pred             HHHhhcccccccccccCCc-cCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHH
Confidence            3344444434455666777 999999988876432  24679999999999999998874     358999999999999


Q ss_pred             HHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          178 LVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       178 ~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      .|+++..   ++.++++|+...++             .++||+||+||||..
T Consensus        91 ~Ar~n~~---~~~~~~~D~~~~~~-------------~~~FDlIIsNPPY~~  126 (241)
T PHA03412         91 LGKRIVP---EATWINADALTTEF-------------DTLFDMAISNPPFGK  126 (241)
T ss_pred             HHHhhcc---CCEEEEcchhcccc-------------cCCccEEEECCCCCC
Confidence            9998865   68899999986542             257999999999974

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.51  E-value=5.7e-14  Score=121.91  Aligned_cols=112  Identities=17%  Similarity=0.293  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~  200 (281)
                      ++.+.+.+++.+...++.+|||+|||||.++..+++.   .++|+|+|+|++|++.|+++....  .+|+++++|++++|
T Consensus        32 ~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp  111 (233)
T PF01209_consen   32 DRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP  111 (233)
T ss_dssp             -----SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--
T ss_pred             HHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc
Confidence            3455667777777888999999999999999999886   359999999999999999988754  39999999999999


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCC------cccHHHHHHhccCCCCcceEEE
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPF------NISTDVIKQLLPMGDIFSEVVL  249 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~------~~~~~~~~~ll~~~~~~~~~~~  249 (281)
                      ++|            ++||+|++..-+      ...-..+.+++++||.+...-+
T Consensus       112 ~~d------------~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~  154 (233)
T PF01209_consen  112 FPD------------NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEF  154 (233)
T ss_dssp             S-T------------T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCC------------CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence            876            566777764322      2222455688899988754443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.47  E-value=3.5e-13  Score=103.18  Aligned_cols=72  Identities=31%  Similarity=0.443  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCc-cccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDF-VKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~--~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~-~~~~~~d~~~d~v~~~~~  214 (281)
                      |+.+|||||||+|.++..+++  .+.+|+|||+|+++++.|+++...   .++++++++|+ ....             .
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------------~   67 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-------------F   67 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-------------T
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-------------c
Confidence            467999999999999999999  588999999999999999999832   24999999999 3322             2


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+.||+|+.+.
T Consensus        68 ~~~~D~v~~~~   78 (112)
T PF12847_consen   68 LEPFDLVICSG   78 (112)
T ss_dssp             SSCEEEEEECS
T ss_pred             CCCCCEEEECC
Confidence            36799999987

...

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.45  E-value=3.7e-13  Score=111.40  Aligned_cols=102  Identities=23%  Similarity=0.415  Sum_probs=76.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccch
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~  205 (281)
                      ...+++.+...++.+|||+|||+|.++..+++...  +|+++|+++.+++.+++++..++  +++++++|..+..     
T Consensus        20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-----   94 (170)
T PF05175_consen   20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-----   94 (170)
T ss_dssp             HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-----
T ss_pred             HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-----
Confidence            33455555544678999999999999999999844  69999999999999999998764  4999999987642     


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCcccHH----HH-------HHhccCCCCc
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNISTD----VI-------KQLLPMGDIF  244 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~~~~----~~-------~~ll~~~~~~  244 (281)
                              ..+.||.|++|||++....    ..       .++|+++|.+
T Consensus        95 --------~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l  136 (170)
T PF05175_consen   95 --------PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRL  136 (170)
T ss_dssp             --------CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             --------cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEE
Confidence                    2478999999999965543    22       3666776655

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.45  E-value=3.3e-13  Score=115.15  Aligned_cols=150  Identities=21%  Similarity=0.255  Sum_probs=99.5

Q ss_pred             HHhcCCCCCcccCccccCCHHHHHHHHHHhcC---CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Q 023482          108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       108 ~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      +.....+....|.+-...++-....+.+.+..   .++.+|||||||-|.++..||+.|++|+|+|+++++++.|+.+..
T Consensus        23 la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~  102 (243)
T COG2227          23 LASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHAL  102 (243)
T ss_pred             HHhhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhh
Confidence            33334445555544334444444445544443   478899999999999999999999999999999999999999887


Q ss_pred             CCC-CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCC-cccHHH-----HHHhccCCCCcceEEE--------
Q 023482          185 SID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF-NISTDV-----IKQLLPMGDIFSEVVL--------  249 (281)
Q Consensus       185 ~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~-~~~~~~-----~~~ll~~~~~~~~~~~--------  249 (281)
                      ..+ ++.+....++++.            ...++||+|++.--. |...+.     +.++++++|.+-..+.        
T Consensus       103 e~gv~i~y~~~~~edl~------------~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~  170 (243)
T COG2227         103 ESGVNIDYRQATVEDLA------------SAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYL  170 (243)
T ss_pred             hccccccchhhhHHHHH------------hcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHH
Confidence            665 6667777777654            233789999985322 233333     4688888886633332        


Q ss_pred             --eehhhHHHHhcCCCCCCCccch
Q 023482          250 --LLQEETALRLVEPSLRTSEYRP  271 (281)
Q Consensus       250 --~~~~~~a~rl~~~~pg~~~y~~  271 (281)
                        .+..++..+++  +.|++.|.+
T Consensus       171 ~~i~~ae~vl~~v--P~gTH~~~k  192 (243)
T COG2227         171 LAIIGAEYVLRIV--PKGTHDYRK  192 (243)
T ss_pred             HHHHHHHHHHHhc--CCcchhHHH
Confidence              23345556665  344555544

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.45  E-value=8.6e-13  Score=110.01  Aligned_cols=83  Identities=29%  Similarity=0.343  Sum_probs=69.1

Q ss_pred             HHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHH
Q 023482          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      .+...+...++++|||+|||+|.++..++..+.+|+++|+++.+++.++++...++ +++++++|+.+..          
T Consensus        10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----------   79 (179)
T TIGR00537        10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV----------   79 (179)
T ss_pred             HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc----------
Confidence            34444445567899999999999999999987799999999999999999987554 7889999987642          


Q ss_pred             hhcCCCCccEEEEcCCCc
Q 023482          211 RRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~  228 (281)
                          .++||.|++|+||.
T Consensus        80 ----~~~fD~Vi~n~p~~   93 (179)
T TIGR00537        80 ----RGKFDVILFNPPYL   93 (179)
T ss_pred             ----CCcccEEEECCCCC
Confidence                25799999999995

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN02244 tocopherol O-methyltransferase

Probab=99.44  E-value=2e-12  Score=118.43  Aligned_cols=109  Identities=17%  Similarity=0.141  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHhcC-----CCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcc
Q 023482          127 SEINDQLAAAAAV-----QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (281)
Q Consensus       127 ~~~~~~l~~~l~~-----~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~  197 (281)
                      ..+.+.+++.+.+     .++++|||||||+|.++..+++. +++|+|||+++.+++.|+++....   ++++++++|+.
T Consensus        99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~  178 (340)
T PLN02244         99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL  178 (340)
T ss_pred             HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence            3456777777776     67789999999999999999987 789999999999999999887644   37999999999


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCccc------HHHHHHhccCCCCcceE
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS------TDVIKQLLPMGDIFSEV  247 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~------~~~~~~ll~~~~~~~~~  247 (281)
                      ++++++            +.||+|+++..++..      -..+.+++++||.+...
T Consensus       179 ~~~~~~------------~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~  222 (340)
T PLN02244        179 NQPFED------------GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIV  222 (340)
T ss_pred             cCCCCC------------CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence            988654            678888886443221      12345888898876443

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.44  E-value=3.2e-13  Score=104.29  Aligned_cols=79  Identities=28%  Similarity=0.407  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      |.+|||+|||+|.++..+++.+ .+++|+|+++..++.|+.++...   ++++++++|+.+....          ...++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----------~~~~~   70 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP----------LPDGK   70 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT----------CTTT-
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh----------ccCce
Confidence            4689999999999999999997 89999999999999999998765   3799999999887511          23478


Q ss_pred             ccEEEEcCCCccc
Q 023482          218 FAKVVANIPFNIS  230 (281)
Q Consensus       218 ~d~Vi~n~P~~~~  230 (281)
                      ||+|++||||...
T Consensus        71 ~D~Iv~npP~~~~   83 (117)
T PF13659_consen   71 FDLIVTNPPYGPR   83 (117)
T ss_dssp             EEEEEE--STTSB
T ss_pred             eEEEEECCCCccc
Confidence            9999999999753

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.44  E-value=1.2e-12  Score=115.80  Aligned_cols=110  Identities=15%  Similarity=0.200  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHhcC-----CCCeEEEEcCccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVK  198 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~-----~~~v~~~~gD~~~  198 (281)
                      ..+...+++.+.+.++.+|||+|||+|.++..+++. +  .+|+|+|+|++|++.|+++...     ..+++++++|+.+
T Consensus        59 ~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~  138 (261)
T PLN02233         59 RIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD  138 (261)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence            344555566777778899999999999999999876 3  5999999999999999876531     2489999999999


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceEE
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~~  248 (281)
                      +|+++            ++||.|+++.-++...      ..+.+++++||.+....
T Consensus       139 lp~~~------------~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        139 LPFDD------------CYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             CCCCC------------CCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            98754            5688888865444321      33458889998874443

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.44  E-value=3.5e-13  Score=116.61  Aligned_cols=87  Identities=21%  Similarity=0.345  Sum_probs=72.5

Q ss_pred             HHHhcCCCCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhH
Q 023482          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      ..+.......+|||+|||+|.+++.++++ . ++++|||+++++.+.|++++..++   +++++++|+.++...      
T Consensus        37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~------  110 (248)
T COG4123          37 AAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA------  110 (248)
T ss_pred             HhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc------
Confidence            34444455779999999999999999998 4 799999999999999999998653   999999999987643      


Q ss_pred             HHhhcCCCCccEEEEcCCCccc
Q 023482          209 FERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                          ....+||+||+||||...
T Consensus       111 ----~~~~~fD~Ii~NPPyf~~  128 (248)
T COG4123         111 ----LVFASFDLIICNPPYFKQ  128 (248)
T ss_pred             ----ccccccCEEEeCCCCCCC
Confidence                334579999999999643

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.43  E-value=4e-13  Score=117.87  Aligned_cols=108  Identities=19%  Similarity=0.234  Sum_probs=86.3

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccc
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~  204 (281)
                      ....+.+.+++.+...++.+|||+|||+|.++..++..+.+|+++|+|+.|++.|+++..   ...++++|+.++++.+ 
T Consensus        26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~~~~-  101 (251)
T PRK10258         26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA---ADHYLAGDIESLPLAT-  101 (251)
T ss_pred             HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCcCCC-
Confidence            345667778888876667899999999999999999888999999999999999998754   4578999999887543 


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~  247 (281)
                                 +.||+|++|.++++..      ..+.++++++|.+...
T Consensus       102 -----------~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~  139 (251)
T PRK10258        102 -----------ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFT  139 (251)
T ss_pred             -----------CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence                       5799999998877643      2334778888876443

>PRK14967 putative methyltransferase; Provisional

Probab=99.43  E-value=1.1e-12  Score=113.25  Aligned_cols=91  Identities=24%  Similarity=0.332  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~  204 (281)
                      ..++..++..+...++++|||+|||+|.++..++..+. +|+++|+++.+++.++++....+ +++++++|+.+.     
T Consensus        22 s~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-----   96 (223)
T PRK14967         22 TQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-----   96 (223)
T ss_pred             HHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-----
Confidence            34444555555666788999999999999999998765 99999999999999999887554 688999998763     


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                              .....||+|++||||...
T Consensus        97 --------~~~~~fD~Vi~npPy~~~  114 (223)
T PRK14967         97 --------VEFRPFDVVVSNPPYVPA  114 (223)
T ss_pred             --------ccCCCeeEEEECCCCCCC
Confidence                    123679999999998754

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.43  E-value=2e-12  Score=118.04  Aligned_cols=95  Identities=23%  Similarity=0.258  Sum_probs=82.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH  200 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~  200 (281)
                      -...+.++..++......++.+|||+|||+|.++..++..+.+++|+|+++.|++.|+.|++..+  +++++++|+.+++
T Consensus       164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~  243 (329)
T TIGR01177       164 GSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP  243 (329)
T ss_pred             CCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC
Confidence            44567888888888888889999999999999999888888999999999999999999987553  6899999999987


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      +.            .+.||.|++||||..
T Consensus       244 ~~------------~~~~D~Iv~dPPyg~  260 (329)
T TIGR01177       244 LS------------SESVDAIATDPPYGR  260 (329)
T ss_pred             cc------------cCCCCEEEECCCCcC
Confidence            53            367999999999964

This family is found exclusively in the Archaea.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.42  E-value=2e-12  Score=111.98  Aligned_cols=109  Identities=13%  Similarity=0.221  Sum_probs=86.2

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcccc
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC  199 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~  199 (281)
                      ....+.+.+++.+.+.++.+|||+|||+|..+..+++.   +.+|+|+|+++.+++.|+++....  ++++++++|+.++
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  108 (231)
T TIGR02752        29 RHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL  108 (231)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC
Confidence            45566777888888888899999999999999999875   359999999999999999887643  4899999999987


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcc
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFS  245 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~  245 (281)
                      ++.+            ++||+|+++..+++..      ..+.+++++||.+.
T Consensus       109 ~~~~------------~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~  148 (231)
T TIGR02752       109 PFDD------------NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV  148 (231)
T ss_pred             CCCC------------CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEE
Confidence            7532            5789998876654432      22357778888663

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.41  E-value=2e-12  Score=119.29  Aligned_cols=106  Identities=15%  Similarity=0.207  Sum_probs=81.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-----CeEEEEcCcccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHI  201 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-----~v~~~~gD~~~~~~  201 (281)
                      -.+.+++.+....+.+|||+|||+|.++..+++.  +.+|+++|+|+.+++.|++++..++     +++++.+|+.+.  
T Consensus       216 GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~--  293 (378)
T PRK15001        216 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--  293 (378)
T ss_pred             HHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--
Confidence            3566778887655679999999999999999987  5699999999999999999886442     688999988652  


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcCCCcccH--------HHH---HHhccCCCCcceE
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANIPFNIST--------DVI---KQLLPMGDIFSEV  247 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~--------~~~---~~ll~~~~~~~~~  247 (281)
                                 ...+.||+|++||||+...        .++   .+.++++|.+...
T Consensus       294 -----------~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        294 -----------VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             -----------CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence                       1235799999999997542        222   3667788766433

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.41  E-value=1.9e-12  Score=114.50  Aligned_cols=122  Identities=18%  Similarity=0.287  Sum_probs=94.5

Q ss_pred             CCCcccCccccCCH--HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeE
Q 023482          114 FPRKSLGQHYMLNS--EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLK  190 (281)
Q Consensus       114 ~~~~~~g~~~~~~~--~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~  190 (281)
                      .....||..+..+.  +....++..+.+.++.+|||||||+|..+..++.. +++|+|+|+++.+++.|+++....++++
T Consensus        23 ~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~  102 (263)
T PTZ00098         23 AYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIE  102 (263)
T ss_pred             hHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceE
Confidence            34445676676664  45788888898889999999999999999999875 6799999999999999999876556899


Q ss_pred             EEEcCccccccccchhhHHHhhcCCCCccEEEEcCC-Cccc----H---HHHHHhccCCCCcceE
Q 023482          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP-FNIS----T---DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       191 ~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P-~~~~----~---~~~~~ll~~~~~~~~~  247 (281)
                      ++++|+.+.++++            +.||+|+++.. ++..    .   ..+.++++++|.+...
T Consensus       103 ~~~~D~~~~~~~~------------~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~  155 (263)
T PTZ00098        103 FEANDILKKDFPE------------NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLIT  155 (263)
T ss_pred             EEECCcccCCCCC------------CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            9999999877543            67899998532 2222    1   2235888999887543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.41  E-value=2.7e-12  Score=108.74  Aligned_cols=99  Identities=15%  Similarity=0.172  Sum_probs=77.3

Q ss_pred             HHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHH
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      +++.+...++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.++++....+  ++++..+|+.+.++.        
T Consensus        22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------   93 (197)
T PRK11207         22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD--------   93 (197)
T ss_pred             HHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC--------
Confidence            3444455567899999999999999999999999999999999999998876543  689999998876532        


Q ss_pred             hhcCCCCccEEEEcCCCcccH--------HHHHHhccCCCCc
Q 023482          211 RRKSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~  244 (281)
                           +.||+|+++..+++..        ..+.++++++|.+
T Consensus        94 -----~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~  130 (197)
T PRK11207         94 -----GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYN  130 (197)
T ss_pred             -----CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEE
Confidence                 5699999987654321        2334778888875

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.40  E-value=2.9e-12  Score=108.44  Aligned_cols=100  Identities=16%  Similarity=0.156  Sum_probs=76.5

Q ss_pred             HHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHH
Q 023482          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      .+++.+...++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.++++....+ ++++..+|+...++         
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~---------   91 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL---------   91 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc---------
Confidence            44455555567799999999999999999999999999999999999988776443 57777888765442         


Q ss_pred             hhcCCCCccEEEEcCCCcccH-----H---HHHHhccCCCCc
Q 023482          211 RRKSSSGFAKVVANIPFNIST-----D---VIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~~-----~---~~~~ll~~~~~~  244 (281)
                          .+.||+|+++.+++...     .   .+.+++++||.+
T Consensus        92 ----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  129 (195)
T TIGR00477        92 ----NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYN  129 (195)
T ss_pred             ----cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEE
Confidence                25699999988775431     2   334677888874

Part of a tellurite-reducing operon tehA and tehB

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.40  E-value=2.6e-12  Score=104.18  Aligned_cols=99  Identities=22%  Similarity=0.331  Sum_probs=75.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHH-c--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN-A--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~-~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      ++.+|||+|||+|.++..+++ .  +.+++|+|++++|++.|+++++..  .+++++++|+.+++-.           -.
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-----------~~   71 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-----------LE   71 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-----------SS
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-----------cC
Confidence            578999999999999999994 3  679999999999999999987644  3899999999996510           01


Q ss_pred             CCccEEEEcCCCcccHH------HHHHhccCCCCcceEEEe
Q 023482          216 SGFAKVVANIPFNISTD------VIKQLLPMGDIFSEVVLL  250 (281)
Q Consensus       216 ~~~d~Vi~n~P~~~~~~------~~~~ll~~~~~~~~~~~~  250 (281)
                      ..||+|+++.+++....      .+.+++++++.+-.....
T Consensus        72 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   72 EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            57999999977644332      234677777776444444

...

>PHA03411 putative methyltransferase; Provisional

Probab=99.39  E-value=2e-12  Score=113.49  Aligned_cols=93  Identities=15%  Similarity=0.294  Sum_probs=75.9

Q ss_pred             cCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCc
Q 023482          119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF  196 (281)
Q Consensus       119 ~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~  196 (281)
                      .|+ |++++.++..+..  ....+.+|||+|||+|.++..++..  +.+|+++|+++.+++.++++..   +++++++|+
T Consensus        45 ~G~-FfTP~~i~~~f~~--~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~---~v~~v~~D~  118 (279)
T PHA03411         45 SGA-FFTPEGLAWDFTI--DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP---EAEWITSDV  118 (279)
T ss_pred             cee-EcCCHHHHHHHHh--ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc---CCEEEECch
Confidence            466 9999999866542  3334579999999999999988775  4699999999999999998754   789999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                      .++..             ...||+|++||||...
T Consensus       119 ~e~~~-------------~~kFDlIIsNPPF~~l  139 (279)
T PHA03411        119 FEFES-------------NEKFDVVISNPPFGKI  139 (279)
T ss_pred             hhhcc-------------cCCCcEEEEcCCcccc
Confidence            87642             2579999999999763

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=99.38  E-value=1.6e-12  Score=109.07  Aligned_cols=171  Identities=22%  Similarity=0.391  Sum_probs=136.6

Q ss_pred             hcCCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC-C
Q 023482          110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-D  187 (281)
Q Consensus       110 ~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~-~  187 (281)
                      -|...+++.+.|+|.++-.+.+.+.+..+.-..+-|.|||.|.|.+|..+.+.+. .+..||+++..+.-.+...+.. +
T Consensus        19 lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~   98 (326)
T KOG0821|consen   19 LYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPG   98 (326)
T ss_pred             HHHHHHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCc
Confidence            3356788889999999999999999999887888999999999999999999864 8999999998888776655544 3


Q ss_pred             CeEEEEcCccccccccchhhHHHhh-cCCCCccEEEEcCCCcccHHHHHHhccCC----CCc----ceEEEeehhhHHHH
Q 023482          188 QLKVLQEDFVKCHIRSHMLSLFERR-KSSSGFAKVVANIPFNISTDVIKQLLPMG----DIF----SEVVLLLQEETALR  258 (281)
Q Consensus       188 ~v~~~~gD~~~~~~~d~~~d~v~~~-~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~----~~~----~~~~~~~~~~~a~r  258 (281)
                      +..++++|+......+..-+-...- .+......||+|+||+..+|++-+++++-    |.|    ..+++.+|.|+|.|
T Consensus        99 ~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~EVAeR  178 (326)
T KOG0821|consen   99 KLRIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAER  178 (326)
T ss_pred             ceEEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHHHHHHH
Confidence            8999999999877665433322211 12234577999999999999888777432    333    46788999999999


Q ss_pred             hcCCCCCCCccchhhhhhhhccC
Q 023482          259 LVEPSLRTSEYRPINIFVNFYSG  281 (281)
Q Consensus       259 l~~~~pg~~~y~~~s~l~~~~~~  281 (281)
                      +. +.-|..--.++|++-|+.|+
T Consensus       179 lC-aP~~~~qRsRlSvMSQy~~E  200 (326)
T KOG0821|consen  179 LC-APTGSKQRSRLSVMSQYLCE  200 (326)
T ss_pred             hc-ccccccchhhHHHHHHHhcC
Confidence            99 77788888999999999875

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=7.8e-13  Score=116.77  Aligned_cols=93  Identities=22%  Similarity=0.314  Sum_probs=76.2

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~  204 (281)
                      -.+.+++.+....+.+|||+|||.|.+++.+++..  .+++-+|+|..+++.|++|+..++  +..+...|..+-     
T Consensus       146 GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-----  220 (300)
T COG2813         146 GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-----  220 (300)
T ss_pred             HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-----
Confidence            36678888887777799999999999999999984  599999999999999999998664  446777776552     


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCcccHHHHH
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~  235 (281)
                               ..++||.||+||||+....+..
T Consensus       221 ---------v~~kfd~IisNPPfh~G~~v~~  242 (300)
T COG2813         221 ---------VEGKFDLIISNPPFHAGKAVVH  242 (300)
T ss_pred             ---------ccccccEEEeCCCccCCcchhH
Confidence                     2248999999999987665554

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.36  E-value=1.7e-11  Score=95.11  Aligned_cols=109  Identities=18%  Similarity=0.249  Sum_probs=82.9

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcccccc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI  201 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~  201 (281)
                      .+.+...+++.+.+.++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++++....  .+++++.+|+.+...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   83 (124)
T TIGR02469         4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE   83 (124)
T ss_pred             hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh
Confidence            4566777888888777889999999999999999986  469999999999999999887654  378999999875321


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcCCCcccHH---HHHHhccCCCCcc
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANIPFNISTD---VIKQLLPMGDIFS  245 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~---~~~~ll~~~~~~~  245 (281)
                                 ...+.||.|+...+......   .+.++++++|.+.
T Consensus        84 -----------~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li  119 (124)
T TIGR02469        84 -----------DSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIV  119 (124)
T ss_pred             -----------hhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEE
Confidence                       11257999998765444333   3347777777653

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.36  E-value=3.4e-12  Score=120.96  Aligned_cols=105  Identities=22%  Similarity=0.246  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~  204 (281)
                      ..+.+.+++.+...++.+|||+|||+|.++..++..+.+|+|+|+|+.|++.|+++...++  +++++++|+.+.. .+.
T Consensus       283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l-~~~  361 (443)
T PRK13168        283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF-TDQ  361 (443)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh-hhh
Confidence            3455666667777788899999999999999999988899999999999999999987553  8999999997632 000


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhcc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP  239 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~  239 (281)
                      .       .....||+|+.||||....++++.+.+
T Consensus       362 ~-------~~~~~fD~Vi~dPPr~g~~~~~~~l~~  389 (443)
T PRK13168        362 P-------WALGGFDKVLLDPPRAGAAEVMQALAK  389 (443)
T ss_pred             h-------hhcCCCCEEEECcCCcChHHHHHHHHh
Confidence            0       112569999999999877777776664

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.36  E-value=9.3e-12  Score=105.45  Aligned_cols=93  Identities=16%  Similarity=0.207  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccc
Q 023482          127 SEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR  202 (281)
Q Consensus       127 ~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~  202 (281)
                      ..+.+.+++.+.. .++.+|||+|||+|.+++.++.. ..+|+++|+++.+++.+++|+..++  +++++++|+.+.-. 
T Consensus        38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~-  116 (199)
T PRK10909         38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA-  116 (199)
T ss_pred             HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh-
Confidence            4444555555532 45679999999999999976555 4699999999999999999987654  79999999876310 


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                                .....||+||.||||...
T Consensus       117 ----------~~~~~fDlV~~DPPy~~g  134 (199)
T PRK10909        117 ----------QPGTPHNVVFVDPPFRKG  134 (199)
T ss_pred             ----------hcCCCceEEEECCCCCCC
Confidence                      112469999999998543

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=3.9e-12  Score=113.32  Aligned_cols=73  Identities=26%  Similarity=0.462  Sum_probs=61.6

Q ss_pred             EEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          144 IVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      +|||+|||+|.+++.++...  ++|+|+|+|+.+++.|++|...++  ++.++.+|..+-              -.+.||
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~--------------~~~~fD  178 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP--------------LRGKFD  178 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc--------------cCCcee
Confidence            79999999999999999984  499999999999999999998764  667777776552              225899


Q ss_pred             EEEEcCCCccc
Q 023482          220 KVVANIPFNIS  230 (281)
Q Consensus       220 ~Vi~n~P~~~~  230 (281)
                      +||+||||-..
T Consensus       179 lIVsNPPYip~  189 (280)
T COG2890         179 LIVSNPPYIPA  189 (280)
T ss_pred             EEEeCCCCCCC
Confidence            99999999443

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.35  E-value=4.2e-12  Score=115.24  Aligned_cols=105  Identities=13%  Similarity=0.095  Sum_probs=79.5

Q ss_pred             ccCCHHHHHHHH----HHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCc
Q 023482          123 YMLNSEINDQLA----AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~----~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~  196 (281)
                      |..++...+.++    +++...++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|+++...++  +++++++|+
T Consensus       151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~  230 (315)
T PRK03522        151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS  230 (315)
T ss_pred             eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH
Confidence            445555444444    44443456899999999999999999998899999999999999999987654  799999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccH-HHHHHhc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLL  238 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-~~~~~ll  238 (281)
                      .++..           ...+.||+|+.|||+.... .++..+.
T Consensus       231 ~~~~~-----------~~~~~~D~Vv~dPPr~G~~~~~~~~l~  262 (315)
T PRK03522        231 TQFAT-----------AQGEVPDLVLVNPPRRGIGKELCDYLS  262 (315)
T ss_pred             HHHHH-----------hcCCCCeEEEECCCCCCccHHHHHHHH
Confidence            87542           1124699999999987544 4444443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.34  E-value=6.7e-12  Score=110.51  Aligned_cols=105  Identities=15%  Similarity=0.182  Sum_probs=81.4

Q ss_pred             HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhh
Q 023482          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ..+++.+. ..+.+|||+|||+|.++..+++.+.+|+|+|++++|++.|+++....   ++++++++|+.+++.      
T Consensus        35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~------  107 (255)
T PRK11036         35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ------  107 (255)
T ss_pred             HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh------
Confidence            34555555 35679999999999999999999999999999999999999988654   378999999988642      


Q ss_pred             HHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482          208 LFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~  247 (281)
                           ...+.||+|+++..+++..      ..+.++++++|.+...
T Consensus       108 -----~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        108 -----HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             -----hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence                 1236799999876654321      3445888999987544

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.34  E-value=9e-12  Score=104.61  Aligned_cols=92  Identities=21%  Similarity=0.246  Sum_probs=72.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++.+|||+|||+|..+..++..  +++|+++|+++.+++.|+++.+..+  +++++++|+.+++.             .+
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-------------~~  111 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-------------EE  111 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-------------CC
Confidence            4789999999999999999874  6799999999999999999887654  69999999988653             36


Q ss_pred             CccEEEEcCC--CcccHHHHHHhccCCCCcc
Q 023482          217 GFAKVVANIP--FNISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       217 ~~d~Vi~n~P--~~~~~~~~~~ll~~~~~~~  245 (281)
                      +||+|+++.-  +......+.++++++|.+.
T Consensus       112 ~fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv  142 (187)
T PRK00107        112 KFDVVTSRAVASLSDLVELCLPLLKPGGRFL  142 (187)
T ss_pred             CccEEEEccccCHHHHHHHHHHhcCCCeEEE
Confidence            7999999742  1122233457888888764

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.34  E-value=2.1e-11  Score=102.31  Aligned_cols=110  Identities=15%  Similarity=0.180  Sum_probs=85.5

Q ss_pred             cccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcc
Q 023482          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFV  197 (281)
Q Consensus       122 ~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~  197 (281)
                      ..++.+.+...+++.+.+.++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|+++....  .+++++++|+.
T Consensus        12 ~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~   91 (187)
T PRK08287         12 VPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP   91 (187)
T ss_pred             CCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch
Confidence            35677778888888888888899999999999999999886  469999999999999999987654  37999999874


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcccHHH---HHHhccCCCCcc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV---IKQLLPMGDIFS  245 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~---~~~ll~~~~~~~  245 (281)
                      . ++             .+.||+|+++........+   ..++++++|.+.
T Consensus        92 ~-~~-------------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv  128 (187)
T PRK08287         92 I-EL-------------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLV  128 (187)
T ss_pred             h-hc-------------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEE
Confidence            2 21             2568999987544333333   347778888763

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.34  E-value=4.8e-12  Score=111.42  Aligned_cols=98  Identities=24%  Similarity=0.300  Sum_probs=78.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ...+++.+...++.+|||||||+|.++..++..  +.+|+|+|+|+.|++.|+++     +++++++|+.+++.      
T Consensus        18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~------   86 (255)
T PRK14103         18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWKP------   86 (255)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCCC------
Confidence            456677777778899999999999999999987  67999999999999999763     68899999987631      


Q ss_pred             HHHhhcCCCCccEEEEcCCCcccH---H---HHHHhccCCCCcc
Q 023482          208 LFERRKSSSGFAKVVANIPFNIST---D---VIKQLLPMGDIFS  245 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~~---~---~~~~ll~~~~~~~  245 (281)
                             .+.||+|+++..+++..   .   .+.+.+++||.+.
T Consensus        87 -------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~  123 (255)
T PRK14103         87 -------KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIA  123 (255)
T ss_pred             -------CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEE
Confidence                   25799999998776543   2   2346688888764

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.33  E-value=1.3e-11  Score=108.67  Aligned_cols=102  Identities=21%  Similarity=0.299  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d  203 (281)
                      ...+.+++.+.+++|.+|||||||.|.+++.+|+. +.+|+|+++|+++.+.+++++...+   ++++...|..++.   
T Consensus        59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---  135 (283)
T COG2230          59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---  135 (283)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence            34777889999999999999999999999999998 8999999999999999999887653   8999999998875   


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCc-----ccH---HHHHHhccCCCCc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFN-----IST---DVIKQLLPMGDIF  244 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~-----~~~---~~~~~ll~~~~~~  244 (281)
                                  +.||.|+|--.|+     ...   ..+.++++++|.+
T Consensus       136 ------------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~  172 (283)
T COG2230         136 ------------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM  172 (283)
T ss_pred             ------------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence                        4499999854332     122   2335777777765

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.33  E-value=8.4e-12  Score=104.37  Aligned_cols=91  Identities=20%  Similarity=0.321  Sum_probs=71.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++.+|||+|||+|.++..++..  +.+|+|+|+++.+++.++++.+..+  +++++++|+.+++.             .+
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-------------~~  108 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-------------EE  108 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-------------cC
Confidence            4789999999999999998865  4689999999999999998876553  79999999988631             26


Q ss_pred             CccEEEEcCCCcccH---HHHHHhccCCCCcc
Q 023482          217 GFAKVVANIPFNIST---DVIKQLLPMGDIFS  245 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~~---~~~~~ll~~~~~~~  245 (281)
                      .||+|+++. +....   ..+.++++++|.+.
T Consensus       109 ~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lv  139 (181)
T TIGR00138       109 QFDVITSRA-LASLNVLLELTLNLLKVGGYFL  139 (181)
T ss_pred             CccEEEehh-hhCHHHHHHHHHHhcCCCCEEE
Confidence            799999986 33323   34457788888753

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.33  E-value=8e-12  Score=115.79  Aligned_cols=78  Identities=18%  Similarity=0.300  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|+++...++ +++++++|+.+..++           ..+.
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~-----------~~~~  319 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP-----------SEGK  319 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc-----------cCCC
Confidence            5569999999999999999875  5799999999999999999987655 899999998764321           1257


Q ss_pred             ccEEEEcCCCcc
Q 023482          218 FAKVVANIPFNI  229 (281)
Q Consensus       218 ~d~Vi~n~P~~~  229 (281)
                      ||+|++||||..
T Consensus       320 FDLIVSNPPYI~  331 (423)
T PRK14966        320 WDIIVSNPPYIE  331 (423)
T ss_pred             ccEEEECCCCCC
Confidence            999999999953

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.33  E-value=1e-11  Score=111.02  Aligned_cols=77  Identities=16%  Similarity=0.269  Sum_probs=64.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|+++...++   +++++++|+.+.             ..
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-------------~~  186 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-------------LP  186 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-------------cC
Confidence            34579999999999999999986  5699999999999999999987553   799999998652             11


Q ss_pred             CCCccEEEEcCCCcc
Q 023482          215 SSGFAKVVANIPFNI  229 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~  229 (281)
                      ...||+|++||||..
T Consensus       187 ~~~fD~Iv~NPPy~~  201 (284)
T TIGR03533       187 GRKYDLIVSNPPYVD  201 (284)
T ss_pred             CCCccEEEECCCCCC
Confidence            247999999999953

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.32  E-value=1.8e-11  Score=111.94  Aligned_cols=102  Identities=19%  Similarity=0.261  Sum_probs=77.9

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchh
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~  206 (281)
                      ...+++.+......+|||+|||+|.++..+++.  +.+|+++|+++.+++.|+++++.++ ..+++.+|+.+.       
T Consensus       185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-------  257 (342)
T PRK09489        185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-------  257 (342)
T ss_pred             HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-------
Confidence            456666666555568999999999999999987  3599999999999999999987665 567788887542       


Q ss_pred             hHHHhhcCCCCccEEEEcCCCccc--------HHHH---HHhccCCCCcc
Q 023482          207 SLFERRKSSSGFAKVVANIPFNIS--------TDVI---KQLLPMGDIFS  245 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~~--------~~~~---~~ll~~~~~~~  245 (281)
                             ..+.||.|++||||+..        ..++   .+.++++|.+.
T Consensus       258 -------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~  300 (342)
T PRK09489        258 -------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELR  300 (342)
T ss_pred             -------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEE
Confidence                   12679999999999752        1222   35677777663

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.31  E-value=1.6e-11  Score=111.31  Aligned_cols=96  Identities=20%  Similarity=0.137  Sum_probs=75.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++.+|||||||+|.++..+++.+++|+|||+++++++.|+.+....   .+++++++|+.++++.            .+
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~------------~~  197 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE------------GR  197 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc------------cC
Confidence            35679999999999999999988999999999999999999876532   3899999999988743            26


Q ss_pred             CccEEEEcCCCcc------cHHHHHHhccCCCCcceE
Q 023482          217 GFAKVVANIPFNI------STDVIKQLLPMGDIFSEV  247 (281)
Q Consensus       217 ~~d~Vi~n~P~~~------~~~~~~~ll~~~~~~~~~  247 (281)
                      .||+|++.-.+++      .-..+.+++++||.+-..
T Consensus       198 ~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liis  234 (322)
T PLN02396        198 KFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLS  234 (322)
T ss_pred             CCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEE
Confidence            7899988543321      224446888898877444

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.31  E-value=1.6e-11  Score=108.11  Aligned_cols=101  Identities=19%  Similarity=0.342  Sum_probs=80.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchh
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~  206 (281)
                      ....++..+.+.++.+|||||||+|.++..+++.  +.+|+|+|+++.|++.|+++..   +++++.+|+.++..     
T Consensus        19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~---~~~~~~~d~~~~~~-----   90 (258)
T PRK01683         19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP---DCQFVEADIASWQP-----   90 (258)
T ss_pred             HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC---CCeEEECchhccCC-----
Confidence            4556777777778899999999999999999986  5799999999999999998764   78999999976532     


Q ss_pred             hHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcc
Q 023482          207 SLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFS  245 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~  245 (281)
                              ...||+|+++..+++..      ..+.+++++||.+.
T Consensus        91 --------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~  127 (258)
T PRK01683         91 --------PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLA  127 (258)
T ss_pred             --------CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEE
Confidence                    25799999998776543      22346778888653

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.30  E-value=2.8e-11  Score=107.46  Aligned_cols=103  Identities=25%  Similarity=0.324  Sum_probs=75.4

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d  203 (281)
                      ...+.+++.+++++|.+|||||||.|.++..+++. |++|+||.+|++..+.+++++.+.+   ++++..+|..+++   
T Consensus        49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---  125 (273)
T PF02353_consen   49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---  125 (273)
T ss_dssp             HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence            34677888889999999999999999999999998 9999999999999999999988664   7999999998765   


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCc-----cc---HHHHHHhccCCCCcc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFN-----IS---TDVIKQLLPMGDIFS  245 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~-----~~---~~~~~~ll~~~~~~~  245 (281)
                                  +.||.|++--.+.     ..   -..+.++|+++|.+-
T Consensus       126 ------------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~  163 (273)
T PF02353_consen  126 ------------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLV  163 (273)
T ss_dssp             -------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEE
T ss_pred             ------------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEE
Confidence                        4799999843222     11   244568899998874

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.30  E-value=3e-11  Score=109.50  Aligned_cols=110  Identities=14%  Similarity=0.147  Sum_probs=86.3

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~  197 (281)
                      +..++.+...+++.+.+.++++|||||||+|+++..+++..   .+|+++|+++++++.|++++...+  ++.++++|+.
T Consensus        62 ~~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~  141 (322)
T PRK13943         62 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGY  141 (322)
T ss_pred             cCCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChh
Confidence            55678888999999988889999999999999999999862   379999999999999999887553  8999999987


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      +...            ....||+|+.+.........+.+.++++|.+
T Consensus       142 ~~~~------------~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~L  176 (322)
T PRK13943        142 YGVP------------EFAPYDVIFVTVGVDEVPETWFTQLKEGGRV  176 (322)
T ss_pred             hccc------------ccCCccEEEECCchHHhHHHHHHhcCCCCEE
Confidence            6542            2256899998644433344455566666654

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.30  E-value=5.9e-12  Score=105.40  Aligned_cols=99  Identities=18%  Similarity=0.291  Sum_probs=81.3

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ...++..+.+....+|.|+|||+|.+|..|+++  ++.|+|||-|++|++.|+.+..   +++|..+|+.++.       
T Consensus        19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp---~~~f~~aDl~~w~-------   88 (257)
T COG4106          19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP---DATFEEADLRTWK-------   88 (257)
T ss_pred             HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC---CCceecccHhhcC-------
Confidence            345667777778889999999999999999998  7899999999999999988876   8899999999873       


Q ss_pred             HHHhhcCCCCccEEEEcCCCcccHH---HHH---HhccCCCCc
Q 023482          208 LFERRKSSSGFAKVVANIPFNISTD---VIK---QLLPMGDIF  244 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~~~---~~~---~ll~~~~~~  244 (281)
                            .....|++++|--++|.++   ++.   ..+.+||.+
T Consensus        89 ------p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~L  125 (257)
T COG4106          89 ------PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVL  125 (257)
T ss_pred             ------CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceE
Confidence                  3467899999988887663   222   344677765

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.29  E-value=6.2e-11  Score=97.89  Aligned_cols=117  Identities=22%  Similarity=0.266  Sum_probs=90.9

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK  198 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~  198 (281)
                      .++.+++....+..|.+.++++++|||||||.++..++..  ..+|++||.++++++..++|..+.+  |++++.||+.+
T Consensus        16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~   95 (187)
T COG2242          16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPE   95 (187)
T ss_pred             CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchH
Confidence            4788999999999999999999999999999999999954  5699999999999999999998775  99999999987


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcccHHHH---HHhccCCCCcceEEEeeh
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIFSEVVLLLQ  252 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~---~~ll~~~~~~~~~~~~~~  252 (281)
                      .-            .....+|.||..=- .....++   ...+++++.+-.....++
T Consensus        96 ~L------------~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE  139 (187)
T COG2242          96 AL------------PDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLE  139 (187)
T ss_pred             hh------------cCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence            52            12236899997543 3333333   344556666644443333

>PRK14968 putative methyltransferase; Provisional

Probab=99.29  E-value=4.3e-11  Score=99.91  Aligned_cols=90  Identities=23%  Similarity=0.336  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--C--eEEEEcCccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHIR  202 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~--v~~~~gD~~~~~~~  202 (281)
                      ......+++.+...++++|||+|||+|.++..++..+.+++|+|+++++++.+++++...+  +  +.++++|+.+..  
T Consensus         9 ~~~~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--   86 (188)
T PRK14968          9 AEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF--   86 (188)
T ss_pred             chhHHHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc--
Confidence            3334555556655678899999999999999999988899999999999999998876443  2  889999986631  


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                                 ....||+|++|+||..
T Consensus        87 -----------~~~~~d~vi~n~p~~~  102 (188)
T PRK14968         87 -----------RGDKFDVILFNPPYLP  102 (188)
T ss_pred             -----------cccCceEEEECCCcCC
Confidence                       1247999999999865

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.29  E-value=6.7e-11  Score=101.44  Aligned_cols=113  Identities=16%  Similarity=0.247  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--C------CEEEEEeCCHHHHHHHHHHhcCC-----CCeEEEE
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G------ATVLAIEKDQHMVGLVRERFASI-----DQLKVLQ  193 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~------~~v~gvD~s~~~l~~a~~~~~~~-----~~v~~~~  193 (281)
                      +-|-+..+..+.+..+.++||++||||.++..+.+.  .      .+|+.+|+|++|++.++++..+.     +.+.|++
T Consensus        86 RlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~  165 (296)
T KOG1540|consen   86 RLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE  165 (296)
T ss_pred             HHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence            446677888899989999999999999999999875  2      68999999999999999887443     2599999


Q ss_pred             cCccccccccchhhHHHhhcCCCCccEEEE--cCCC-cccHHHHHHhccCCCCcceEE
Q 023482          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVA--NIPF-NISTDVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~--n~P~-~~~~~~~~~ll~~~~~~~~~~  248 (281)
                      +|++++||+|+++|..         ..-++  |.+. ...-...-+.|++|++|.+.-
T Consensus       166 ~dAE~LpFdd~s~D~y---------TiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe  214 (296)
T KOG1540|consen  166 GDAEDLPFDDDSFDAY---------TIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE  214 (296)
T ss_pred             CCcccCCCCCCcceeE---------EEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999999988655543         11111  3221 111123348889999886444

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.29  E-value=1.3e-11  Score=90.99  Aligned_cols=86  Identities=26%  Similarity=0.369  Sum_probs=66.9

Q ss_pred             EEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEc
Q 023482          146 LEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (281)
Q Consensus       146 LDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n  224 (281)
                      ||+|||+|..+..+++. +.+|+++|+++++++.++++... .++.+.++|+.++|+++            ++||.|+++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~~------------~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLPFPD------------NSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSSS-T------------T-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCcccc------------ccccccccc
Confidence            89999999999999999 88999999999999999998864 36779999999999765            788999997


Q ss_pred             CCCcccH------HHHHHhccCCCCc
Q 023482          225 IPFNIST------DVIKQLLPMGDIF  244 (281)
Q Consensus       225 ~P~~~~~------~~~~~ll~~~~~~  244 (281)
                      --+++..      ..+.++++++|.+
T Consensus        68 ~~~~~~~~~~~~l~e~~rvLk~gG~l   93 (95)
T PF08241_consen   68 SVLHHLEDPEAALREIYRVLKPGGRL   93 (95)
T ss_dssp             SHGGGSSHHHHHHHHHHHHEEEEEEE
T ss_pred             cceeeccCHHHHHHHHHHHcCcCeEE
Confidence            6665442      2334666766643

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.28  E-value=7e-11  Score=103.25  Aligned_cols=89  Identities=21%  Similarity=0.368  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR  202 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~  202 (281)
                      ..++..+++.+. ..+.+|||+|||+|.++..++..  ..+++|+|+++.+++.|+.+....+  +++++++|+.+. + 
T Consensus        74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~-  150 (251)
T TIGR03534        74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-L-  150 (251)
T ss_pred             HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc-C-
Confidence            345555666554 24468999999999999999986  5699999999999999999887543  799999998762 2 


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                                 ..+.||+|++||||..
T Consensus       151 -----------~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534       151 -----------PGGKFDLIVSNPPYIP  166 (251)
T ss_pred             -----------cCCceeEEEECCCCCc
Confidence                       2367999999999974

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.27  E-value=3.4e-11  Score=107.70  Aligned_cols=90  Identities=18%  Similarity=0.315  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcCCC-CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccc
Q 023482          128 EINDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHI  201 (281)
Q Consensus       128 ~~~~~l~~~l~~~~-~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~  201 (281)
                      .+++.++..+.... ..+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|+++...++   +++++++|+.+. +
T Consensus       100 ~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~  178 (284)
T TIGR00536       100 ELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-L  178 (284)
T ss_pred             HHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-C
Confidence            34444444442223 368999999999999999986  4699999999999999999987543   499999998762 1


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                                  ....||+|++||||...
T Consensus       179 ------------~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       179 ------------AGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             ------------cCCCccEEEECCCCCCc
Confidence                        12379999999999543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.27  E-value=7.5e-11  Score=99.97  Aligned_cols=112  Identities=20%  Similarity=0.309  Sum_probs=85.8

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~  196 (281)
                      .++..++....+..+.+.++.+|||+|||+|.++..++..   +.+|+++|+++.+++.|+++...+   ++++++++|+
T Consensus        22 ~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~  101 (198)
T PRK00377         22 PMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEA  101 (198)
T ss_pred             CCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEech
Confidence            4666777777788889999999999999999999998864   359999999999999999887654   3899999998


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHH---HHhccCCCCcc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIFS  245 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~---~~ll~~~~~~~  245 (281)
                      .+...           ...+.||.|+++........++   .+++++++.+.
T Consensus       102 ~~~l~-----------~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv  142 (198)
T PRK00377        102 PEILF-----------TINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIV  142 (198)
T ss_pred             hhhHh-----------hcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEE
Confidence            76421           1125799999965433333333   46678887763

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.26  E-value=3.4e-11  Score=108.80  Aligned_cols=74  Identities=15%  Similarity=0.287  Sum_probs=63.0

Q ss_pred             CEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|+++...++   +++++++|+.+.             ...+.
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-------------l~~~~  201 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-------------LPGRR  201 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-------------CCCCC
Confidence            68999999999999999987  5699999999999999999987553   699999998652             11257


Q ss_pred             ccEEEEcCCCcc
Q 023482          218 FAKVVANIPFNI  229 (281)
Q Consensus       218 ~d~Vi~n~P~~~  229 (281)
                      ||+|++||||..
T Consensus       202 fDlIvsNPPyi~  213 (307)
T PRK11805        202 YDLIVSNPPYVD  213 (307)
T ss_pred             ccEEEECCCCCC
Confidence            999999999953

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.25  E-value=4.9e-11  Score=104.82  Aligned_cols=90  Identities=22%  Similarity=0.241  Sum_probs=67.3

Q ss_pred             HHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccch
Q 023482          129 INDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       129 ~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~  205 (281)
                      +++.++..+.. ..+.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|++|...++ ++++++|+.+....   
T Consensus        73 Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-~~~~~~D~~~~l~~---  148 (251)
T TIGR03704        73 LVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-GTVHEGDLYDALPT---  148 (251)
T ss_pred             HHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CEEEEeechhhcch---
Confidence            34444444432 23458999999999999999876  4699999999999999999987643 68999998653210   


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCcc
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                             ...+.||+|++||||..
T Consensus       149 -------~~~~~fDlVv~NPPy~~  165 (251)
T TIGR03704       149 -------ALRGRVDILAANAPYVP  165 (251)
T ss_pred             -------hcCCCEeEEEECCCCCC
Confidence                   11257999999999963

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.25  E-value=2.4e-11  Score=91.65  Aligned_cols=81  Identities=23%  Similarity=0.434  Sum_probs=61.6

Q ss_pred             EEEEcCCccHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          145 VLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       145 VLDiGcG~G~~t~~la~~~-----~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      |||+|||+|..+..++...     .+++|+|+|++|++.++++....+ +++++++|+.++++.            .+.|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~------------~~~~   68 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS------------DGKF   68 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH------------SSSE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc------------CCCe
Confidence            7999999999999999873     799999999999999999986443 899999999998743            3689


Q ss_pred             cEEEE-cC-CCcccHHHHHHh
Q 023482          219 AKVVA-NI-PFNISTDVIKQL  237 (281)
Q Consensus       219 d~Vi~-n~-P~~~~~~~~~~l  237 (281)
                      |+|++ .. ..+...+.+..+
T Consensus        69 D~v~~~~~~~~~~~~~~~~~l   89 (101)
T PF13649_consen   69 DLVVCSGLSLHHLSPEELEAL   89 (101)
T ss_dssp             EEEEE-TTGGGGSSHHHHHHH
T ss_pred             eEEEEcCCccCCCCHHHHHHH
Confidence            99999 34 223444444433

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.24  E-value=7.4e-11  Score=112.84  Aligned_cols=117  Identities=15%  Similarity=0.196  Sum_probs=88.1

Q ss_pred             cCccccCCHH--HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEc
Q 023482          119 LGQHYMLNSE--INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-QLKVLQE  194 (281)
Q Consensus       119 ~g~~~~~~~~--~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~g  194 (281)
                      +|..|...+.  ..+.+++.+.+.++.+|||||||+|..+..++.. +.+|+|+|+|+.+++.|+++..... +++++++
T Consensus       242 ~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~  321 (475)
T PLN02336        242 FGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVA  321 (475)
T ss_pred             hCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEc
Confidence            4544544443  3566777777778889999999999999999886 7799999999999999998875443 8999999


Q ss_pred             CccccccccchhhHHHhhcCCCCccEEEEcCCCccc---H---HHHHHhccCCCCcceE
Q 023482          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS---T---DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       195 D~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~---~---~~~~~ll~~~~~~~~~  247 (281)
                      |+.+.++++            +.||+|++...+.+.   .   ..+.+++++||.+...
T Consensus       322 d~~~~~~~~------------~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~  368 (475)
T PLN02336        322 DCTKKTYPD------------NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLIS  368 (475)
T ss_pred             CcccCCCCC------------CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence            998877542            578999986443222   1   3345788888876443

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=5e-11  Score=105.87  Aligned_cols=123  Identities=24%  Similarity=0.246  Sum_probs=85.1

Q ss_pred             CCCCcccCccc-cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC-C-
Q 023482          113 RFPRKSLGQHY-MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q-  188 (281)
Q Consensus       113 ~~~~~~~g~~~-~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~-~-  188 (281)
                      +++...||.-. .+...-++.+-+...  ++.+|||+|||+|.+++++++.|+ +|+|+|+||.+++.|+.|...++ . 
T Consensus       135 lDPGlAFGTG~HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~  212 (300)
T COG2264         135 LDPGLAFGTGTHPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL  212 (300)
T ss_pred             EccccccCCCCChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch
Confidence            45566677533 333333444444444  788999999999999999999987 69999999999999999998764 2 


Q ss_pred             -eEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC---CCcccHHHHHHhccCCCCcceEEEe
Q 023482          189 -LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI---PFNISTDVIKQLLPMGDIFSEVVLL  250 (281)
Q Consensus       189 -v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~---P~~~~~~~~~~ll~~~~~~~~~~~~  250 (281)
                       ++....+..+.             ...+.||+||+|.   |.....+.+..++++++.+-..-.+
T Consensus       213 ~~~~~~~~~~~~-------------~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         213 LVQAKGFLLLEV-------------PENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             hhhcccccchhh-------------cccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence             22333333332             2336899999996   3334446667788888877555543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.24  E-value=5.8e-11  Score=101.04  Aligned_cols=95  Identities=20%  Similarity=0.224  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCc-cccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF-VKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~-~~~~~~d~~~d~v~~~~~~  215 (281)
                      ++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.|+++....  .+++++++|+ ..++..          ...
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~----------~~~  109 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM----------FPD  109 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH----------cCc
Confidence            5679999999999999999886  468999999999999999887654  4899999999 555410          123


Q ss_pred             CCccEEEEcCCCcc-----------cH---HHHHHhccCCCCcc
Q 023482          216 SGFAKVVANIPFNI-----------ST---DVIKQLLPMGDIFS  245 (281)
Q Consensus       216 ~~~d~Vi~n~P~~~-----------~~---~~~~~ll~~~~~~~  245 (281)
                      +.||.|+++.|..+           ..   ..+.++++++|.+.
T Consensus       110 ~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~  153 (202)
T PRK00121        110 GSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIH  153 (202)
T ss_pred             cccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEE
Confidence            67899999865322           12   23357888888763

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.24  E-value=5.8e-11  Score=104.09  Aligned_cols=94  Identities=22%  Similarity=0.296  Sum_probs=73.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      .++.+|||+|||+|..+..+++.    +.+|+|+|+|+.|++.|++++...   .+++++++|+.++++           
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----------  123 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----------  123 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----------
Confidence            36779999999999999888872    579999999999999999998754   279999999988764           


Q ss_pred             cCCCCccEEEEcCCCcccH--------HHHHHhccCCCCcceE
Q 023482          213 KSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~~~~  247 (281)
                         +.+|+|+++..++...        ..+.+.+++||.+-..
T Consensus       124 ---~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~  163 (247)
T PRK15451        124 ---ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS  163 (247)
T ss_pred             ---CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence               3478899886654331        2334677888876443

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.23  E-value=4.5e-11  Score=110.90  Aligned_cols=106  Identities=15%  Similarity=0.121  Sum_probs=81.3

Q ss_pred             ccCCHHHHHHHHHH----hcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAA----AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~----l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~  196 (281)
                      |.++....+.+++.    +...++.+|||+|||+|.+++.++..+.+|+|||+++.+++.|++|.+.++  +++++++|+
T Consensus       211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~  290 (374)
T TIGR02085       211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS  290 (374)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence            56666666666543    333356799999999999999999888899999999999999999987654  899999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcc-cHHHHHHhcc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLP  239 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-~~~~~~~ll~  239 (281)
                      .+...           .....||+||.|||+.. ...++..+..
T Consensus       291 ~~~~~-----------~~~~~~D~vi~DPPr~G~~~~~l~~l~~  323 (374)
T TIGR02085       291 AKFAT-----------AQMSAPELVLVNPPRRGIGKELCDYLSQ  323 (374)
T ss_pred             HHHHH-----------hcCCCCCEEEECCCCCCCcHHHHHHHHh
Confidence            76531           11145899999999974 3455555543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=1.6e-11  Score=96.54  Aligned_cols=101  Identities=23%  Similarity=0.357  Sum_probs=84.4

Q ss_pred             CCcccCccccCCHHHHHHHHHHhcC----CCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCCC-C
Q 023482          115 PRKSLGQHYMLNSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID-Q  188 (281)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~l~~~l~~----~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~-~  188 (281)
                      ++-.+.| |.++++++.-|+..+..    -.|+.++|+|||+|.+....+..+ ..|+|+|+++++++.+..|.+... +
T Consensus        19 pk~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq   97 (185)
T KOG3420|consen   19 PKLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ   97 (185)
T ss_pred             cchhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh
Confidence            3444566 99999999999888753    367899999999999997776664 489999999999999999988776 8


Q ss_pred             eEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       189 v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +.++++|+.++-+            ..+.||.++.||||.
T Consensus        98 idlLqcdildle~------------~~g~fDtaviNppFG  125 (185)
T KOG3420|consen   98 IDLLQCDILDLEL------------KGGIFDTAVINPPFG  125 (185)
T ss_pred             hheeeeeccchhc------------cCCeEeeEEecCCCC
Confidence            8999999988753            347899999999995

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.23  E-value=4.7e-11  Score=97.50  Aligned_cols=156  Identities=19%  Similarity=0.251  Sum_probs=113.4

Q ss_pred             cHHHHHHHHHhcCCCCCcccCccccCCHHHHHHHHHHhc---C-CCCCEEEEEcCCccHHHHHHHHcCC--EEEEEeCCH
Q 023482          100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAA---V-QEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQ  173 (281)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~---~-~~~~~VLDiGcG~G~~t~~la~~~~--~v~gvD~s~  173 (281)
                      .|...+.-+++++.....|||..  ....++.++.....   + ...++|||+|||.|.+...|++.+.  +++|||.++
T Consensus        24 ~Y~~El~Nfr~hgd~GEvWFg~~--ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~  101 (227)
T KOG1271|consen   24 AYELELTNFREHGDEGEVWFGED--AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSE  101 (227)
T ss_pred             HHHHHHhhcccCCCccceecCCc--HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCH
Confidence            45566666777788888899852  33456666666655   2 3345999999999999999999854  699999999


Q ss_pred             HHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCC-----cccHHHHHHhccCCCCcc
Q 023482          174 HMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF-----NISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       174 ~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~-----~~~~~~~~~ll~~~~~~~  245 (281)
                      .+++.|+...++.+   .|+|.+.|+.+-++....||+|   ...+.+|+|=..|--     ..-.+.+.+++.+++.|-
T Consensus       102 ~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlv---lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv  178 (227)
T KOG1271|consen  102 KAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLV---LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV  178 (227)
T ss_pred             HHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEE---eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEE
Confidence            99999887766553   4999999999987777778887   777888887665322     223367789999988773


Q ss_pred             eE-EEeehhhHHHHhc
Q 023482          246 EV-VLLLQEETALRLV  260 (281)
Q Consensus       246 ~~-~~~~~~~~a~rl~  260 (281)
                      .. -.+.+.|+..+..
T Consensus       179 ItSCN~T~dELv~~f~  194 (227)
T KOG1271|consen  179 ITSCNFTKDELVEEFE  194 (227)
T ss_pred             EEecCccHHHHHHHHh
Confidence            21 2244556655544

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.23  E-value=2.3e-11  Score=104.73  Aligned_cols=114  Identities=24%  Similarity=0.295  Sum_probs=81.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--------CeEEEEcCccccccccchhhHHHhhc
Q 023482          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--------QLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--------~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      |.+|||+|||+|.++..||+.|++|+|||+++.|++.|+++....+        ++++.+.|+++..             
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-------------  156 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-------------  156 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-------------
Confidence            4789999999999999999999999999999999999999844322        3667777777653             


Q ss_pred             CCCCccEEEEcCCCccc---HHHH---HHhccCCCCc----------ceEEEeehhhHHHHhcCCCCCCCccchh
Q 023482          214 SSSGFAKVVANIPFNIS---TDVI---KQLLPMGDIF----------SEVVLLLQEETALRLVEPSLRTSEYRPI  272 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~~~---~~~~---~~ll~~~~~~----------~~~~~~~~~~~a~rl~~~~pg~~~y~~~  272 (281)
                        +.||+|++.--+...   ..++   ..+++++|.+          .....++-.|...+++  ++|+..|..+
T Consensus       157 --~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~iv--p~Gth~~ekf  227 (282)
T KOG1270|consen  157 --GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIV--PKGTHTWEKF  227 (282)
T ss_pred             --cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhc--CCCCcCHHHc
Confidence              569999986443222   2222   3555666544          2222355567888876  6777666543

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.23  E-value=8.1e-11  Score=104.63  Aligned_cols=91  Identities=13%  Similarity=0.258  Sum_probs=71.5

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      ..+.+|||+|||+|.++..+++.     +.+++|+|+|+.+++.|+++.   ++++++++|+.++|+.+           
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp~~~-----------  149 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLPFAD-----------  149 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCCCcC-----------
Confidence            34578999999999999999875     237999999999999998765   37899999999998754           


Q ss_pred             CCCccEEEEcCCCcccHHHHHHhccCCCCcce
Q 023482          215 SSGFAKVVANIPFNISTDVIKQLLPMGDIFSE  246 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~  246 (281)
                       +.||+|++..... ....+.++++++|.+..
T Consensus       150 -~sfD~I~~~~~~~-~~~e~~rvLkpgG~li~  179 (272)
T PRK11088        150 -QSLDAIIRIYAPC-KAEELARVVKPGGIVIT  179 (272)
T ss_pred             -CceeEEEEecCCC-CHHHHHhhccCCCEEEE
Confidence             5678888764322 23556788888887743

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.22  E-value=9.3e-11  Score=105.05  Aligned_cols=91  Identities=14%  Similarity=0.175  Sum_probs=72.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      ++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.++++....+ ++++..+|+...++             .+.||
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-------------~~~fD  186 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-------------QEEYD  186 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-------------cCCcc
Confidence            45699999999999999999999999999999999999998876554 78888888876543             26799


Q ss_pred             EEEEcCCCccc-----H---HHHHHhccCCCCc
Q 023482          220 KVVANIPFNIS-----T---DVIKQLLPMGDIF  244 (281)
Q Consensus       220 ~Vi~n~P~~~~-----~---~~~~~ll~~~~~~  244 (281)
                      +|+++..++..     .   ..+.++++++|.+
T Consensus       187 ~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~  219 (287)
T PRK12335        187 FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYN  219 (287)
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEE
Confidence            99998655432     1   2234677888864

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.21  E-value=1.9e-10  Score=96.50  Aligned_cols=105  Identities=14%  Similarity=0.233  Sum_probs=73.4

Q ss_pred             HHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHh
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      +++.+...++.++||+|||.|..+..||++|..|+++|+|+.+++.+++.....+ +|+..+.|+.+..++         
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~---------   92 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP---------   92 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T---------
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc---------
Confidence            4445565567799999999999999999999999999999999999887766544 799999999887542         


Q ss_pred             hcCCCCccEEEEcCCC-----cccHHHHHHh---ccCCCCcceEEEe
Q 023482          212 RKSSSGFAKVVANIPF-----NISTDVIKQL---LPMGDIFSEVVLL  250 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~-----~~~~~~~~~l---l~~~~~~~~~~~~  250 (281)
                          +.+|+|++...+     ...+.++.++   +++||.+-....+
T Consensus        93 ----~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~  135 (192)
T PF03848_consen   93 ----EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM  135 (192)
T ss_dssp             ----TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             ----CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence                578999884322     3333444444   4556654433333

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.21  E-value=1.1e-10  Score=97.45  Aligned_cols=96  Identities=19%  Similarity=0.232  Sum_probs=73.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCE---------EEEEeCCHHHHHHHHHHhcCCC---C
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GAT---------VLAIEKDQHMVGLVRERFASID---Q  188 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~---------v~gvD~s~~~l~~a~~~~~~~~---~  188 (281)
                      -...+.++..|+......+++.|||..||+|.+.+..+..  ...         ++|.|+++.+++.|++|+...+   .
T Consensus        10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~   89 (179)
T PF01170_consen   10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY   89 (179)
T ss_dssp             TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred             CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence            4567888999999999999999999999999999888765  223         8899999999999999998654   7


Q ss_pred             eEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       189 v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                      +.+.++|+.++++.            .+.+|.||+||||...
T Consensus        90 i~~~~~D~~~l~~~------------~~~~d~IvtnPPyG~r  119 (179)
T PF01170_consen   90 IDFIQWDARELPLP------------DGSVDAIVTNPPYGRR  119 (179)
T ss_dssp             EEEEE--GGGGGGT------------TSBSCEEEEE--STTS
T ss_pred             eEEEecchhhcccc------------cCCCCEEEECcchhhh
Confidence            89999999999843            2678999999999754

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK05785 hypothetical protein; Provisional

Probab=99.21  E-value=7.9e-11  Score=101.94  Aligned_cols=71  Identities=17%  Similarity=0.263  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      ++.+|||+|||||.++..+++. +.+|+|+|+|++|++.|+++.      .++++|+.++|+++            ++||
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp~~d------------~sfD  112 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALPFRD------------KSFD  112 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCCCCC------------CCEE
Confidence            4679999999999999999988 679999999999999998642      36789999998765            6788


Q ss_pred             EEEEcCCCcc
Q 023482          220 KVVANIPFNI  229 (281)
Q Consensus       220 ~Vi~n~P~~~  229 (281)
                      +|+++...++
T Consensus       113 ~v~~~~~l~~  122 (226)
T PRK05785        113 VVMSSFALHA  122 (226)
T ss_pred             EEEecChhhc
Confidence            8888765543

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.21  E-value=8.1e-11  Score=111.29  Aligned_cols=103  Identities=15%  Similarity=0.156  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccch
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~  205 (281)
                      .+.+.+.+.+.+.++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++++..++  |++++++|+.+.. ..  
T Consensus       279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l-~~--  355 (431)
T TIGR00479       279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL-PK--  355 (431)
T ss_pred             HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH-HH--
Confidence            345566666666777899999999999999999988899999999999999999987554  8999999997631 10  


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCcc-cHHHHHHhc
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNI-STDVIKQLL  238 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~-~~~~~~~ll  238 (281)
                        +.   .....||+|+.+||+.. ...++..+.
T Consensus       356 --~~---~~~~~~D~vi~dPPr~G~~~~~l~~l~  384 (431)
T TIGR00479       356 --QP---WAGQIPDVLLLDPPRKGCAAEVLRTII  384 (431)
T ss_pred             --HH---hcCCCCCEEEECcCCCCCCHHHHHHHH
Confidence              00   12356899999999865 556655544

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.20  E-value=1e-10  Score=109.06  Aligned_cols=112  Identities=20%  Similarity=0.265  Sum_probs=81.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~  197 (281)
                      ++.++......+..+.  ++++|||+|||+|.+++.++..++ +|++||+|+.+++.|++|+..++    +++++++|+.
T Consensus       204 ~flDqr~~R~~~~~~~--~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~  281 (396)
T PRK15128        204 YYLDQRDSRLATRRYV--ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF  281 (396)
T ss_pred             cChhhHHHHHHHHHhc--CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence            4455555555555443  578999999999999988776655 99999999999999999987653    6899999987


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcccHH---------------HHHHhccCCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD---------------VIKQLLPMGDIF  244 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~---------------~~~~ll~~~~~~  244 (281)
                      +.-.     ++.   .....||+||.||||.....               ...++++++|.+
T Consensus       282 ~~l~-----~~~---~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~l  335 (396)
T PRK15128        282 KLLR-----TYR---DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGIL  335 (396)
T ss_pred             HHHH-----HHH---hcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            6421     000   12457999999999854321               224777888765

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.20  E-value=1.1e-10  Score=99.50  Aligned_cols=72  Identities=14%  Similarity=0.207  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++.+|||+|||+|..+..++..  +.+++|||+|++|++.|+++..   +++++++|+.+ ++.            .++
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---~~~~~~~d~~~-~~~------------~~s  105 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---NINIIQGSLFD-PFK------------DNF  105 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---CCcEEEeeccC-CCC------------CCC
Confidence            35678999999999999999886  5799999999999999998754   67889999887 543            367


Q ss_pred             ccEEEEcCCC
Q 023482          218 FAKVVANIPF  227 (281)
Q Consensus       218 ~d~Vi~n~P~  227 (281)
                      ||+|+++..+
T Consensus       106 fD~V~~~~vL  115 (204)
T TIGR03587       106 FDLVLTKGVL  115 (204)
T ss_pred             EEEEEECChh
Confidence            9999987654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.20  E-value=1.5e-10  Score=99.51  Aligned_cols=82  Identities=27%  Similarity=0.347  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhc--CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482          128 EINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (281)
Q Consensus       128 ~~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (281)
                      .+...+++.+.  ..++.+|||+|||+|.++..++..+.+|+|+|++++|++.|+++....   .++++.++|+.+.+  
T Consensus        40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--  117 (219)
T TIGR02021        40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--  117 (219)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--
Confidence            34556666665  456789999999999999999998889999999999999999988644   27999999988753  


Q ss_pred             cchhhHHHhhcCCCCccEEEEc
Q 023482          203 SHMLSLFERRKSSSGFAKVVAN  224 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n  224 (281)
                                   +.||+|++.
T Consensus       118 -------------~~fD~ii~~  126 (219)
T TIGR02021       118 -------------GEFDIVVCM  126 (219)
T ss_pred             -------------CCcCEEEEh
Confidence                         568888874

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK04266 fibrillarin; Provisional

Probab=99.20  E-value=1.9e-10  Score=99.39  Aligned_cols=103  Identities=14%  Similarity=0.117  Sum_probs=77.8

Q ss_pred             HhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .+.+.++.+|||+|||+|..+..++..  ..+|+|+|+++.|++.+.++.....|+.++.+|+.+. .  ...++     
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~-~--~~~~l-----  138 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKP-E--RYAHV-----  138 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCc-c--hhhhc-----
Confidence            578889999999999999999999987  3599999999999998877766556899999998752 1  01111     


Q ss_pred             CCCCccEEEEcCCCccc----HHHHHHhccCCCCcceE
Q 023482          214 SSSGFAKVVANIPFNIS----TDVIKQLLPMGDIFSEV  247 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~~~----~~~~~~ll~~~~~~~~~  247 (281)
                       .+.||+|+++.+..+.    -..+.+++++||.+...
T Consensus       139 -~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        139 -VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             -cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence             1459999998764322    23456788999987543

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.20  E-value=2.4e-10  Score=96.64  Aligned_cols=115  Identities=18%  Similarity=0.278  Sum_probs=83.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~  198 (281)
                      ..+.+++...+++.+.+.++.+|||+|||+|.++..++..  +.+|+++|+++.+++.+++++...  .+++++++|+.+
T Consensus        22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~  101 (196)
T PRK07402         22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE  101 (196)
T ss_pred             CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence            5677788888899998888899999999999999999865  479999999999999999988655  389999999865


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCC--CcccHHHHHHhccCCCCcceEE
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P--~~~~~~~~~~ll~~~~~~~~~~  248 (281)
                      ..      +     .....+|.++....  +...-..+.++++++|.+....
T Consensus       102 ~~------~-----~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~  142 (196)
T PRK07402        102 CL------A-----QLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATA  142 (196)
T ss_pred             HH------h-----hCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence            21      0     00123455555432  2222244456778888764443

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.19  E-value=9.3e-11  Score=99.12  Aligned_cols=98  Identities=20%  Similarity=0.219  Sum_probs=74.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ...+|||||||+|.++..++..  ..+|+|+|+++.+++.|+++....  +|++++++|+.+++...         ...+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~---------~~~~   86 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF---------FPDG   86 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh---------CCCC
Confidence            4568999999999999999987  569999999999999998887654  48999999998754110         1225


Q ss_pred             CccEEEEcCCCccc--------------HHHHHHhccCCCCcceE
Q 023482          217 GFAKVVANIPFNIS--------------TDVIKQLLPMGDIFSEV  247 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~--------------~~~~~~ll~~~~~~~~~  247 (281)
                      .+|.|+.|.|-.|.              -..+.++++++|.+...
T Consensus        87 ~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091        87 SLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             ceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence            79999999754321              23356888888887433

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.19  E-value=1.8e-10  Score=102.35  Aligned_cols=99  Identities=17%  Similarity=0.288  Sum_probs=76.9

Q ss_pred             hcCCCCCEEEEEcCCccHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHh
Q 023482          137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ..+.++++|||+|||+|..+..++.. +  .+|+++|+++.+++.|+++....  .+++++.+|+.++++.+        
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~--------  144 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD--------  144 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC--------
Confidence            34568899999999999988877765 3  48999999999999999987654  48999999999887543        


Q ss_pred             hcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482          212 RKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~  247 (281)
                          +.||+|++|..++...      ..+.+++++||.+...
T Consensus       145 ----~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        145 ----NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             ----CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence                5789999886544322      3445888899887543

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.19  E-value=1.5e-10  Score=107.59  Aligned_cols=102  Identities=22%  Similarity=0.336  Sum_probs=80.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ....+++.+.+.++.+|||||||+|.++..+++. +++|+|+|+|+++++.|+++.... ++++..+|+.+++       
T Consensus       155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l~-------  226 (383)
T PRK11705        155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDLN-------  226 (383)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhcC-------
Confidence            3556778888889999999999999999999986 789999999999999999987532 5888888876542       


Q ss_pred             HHHhhcCCCCccEEEEcCCCccc--------HHHHHHhccCCCCcce
Q 023482          208 LFERRKSSSGFAKVVANIPFNIS--------TDVIKQLLPMGDIFSE  246 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~--------~~~~~~ll~~~~~~~~  246 (281)
                              +.||.|+++..++..        -..+.++++++|.+..
T Consensus       227 --------~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl  265 (383)
T PRK11705        227 --------GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLL  265 (383)
T ss_pred             --------CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEE
Confidence                    579999987554332        1334578888887643

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.19  E-value=1.8e-10  Score=102.19  Aligned_cols=90  Identities=22%  Similarity=0.360  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhc-CC-CCeEEEEcCccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDFVKCHIR  202 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~-~~-~~v~~~~gD~~~~~~~  202 (281)
                      ..+++.++......++.+|||+|||+|.++..++..  ..+++|+|+++.+++.|+++.. .. .+++++++|+.+..  
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~--  171 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL--  171 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--
Confidence            344555555555567789999999999999999987  3799999999999999999976 22 38999999985521  


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                                 ..+.||+|++||||..
T Consensus       172 -----------~~~~fD~Iv~npPy~~  187 (275)
T PRK09328        172 -----------PGGRFDLIVSNPPYIP  187 (275)
T ss_pred             -----------CCCceeEEEECCCcCC
Confidence                       1267999999999953

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=1.9e-10  Score=108.01  Aligned_cols=117  Identities=16%  Similarity=0.118  Sum_probs=94.5

Q ss_pred             ccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcC
Q 023482          118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQED  195 (281)
Q Consensus       118 ~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD  195 (281)
                      .|.-+......+....++++...++++|||+-||.|.+++.+|....+|+|+|+++++++.|++|.+.++  |++|+.+|
T Consensus       270 F~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~  349 (432)
T COG2265         270 FFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGD  349 (432)
T ss_pred             ceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            3333344445566667777788788999999999999999999999999999999999999999998775  89999999


Q ss_pred             ccccccccchhhHHHhhcCCCCccEEEEcCCCcccH-HHHHHhccCCCC
Q 023482          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLLPMGDI  243 (281)
Q Consensus       196 ~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-~~~~~ll~~~~~  243 (281)
                      ++++...-         .....+|.||.+||..... ++++.+.+.+..
T Consensus       350 ae~~~~~~---------~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~  389 (432)
T COG2265         350 AEEFTPAW---------WEGYKPDVVVVDPPRAGADREVLKQLAKLKPK  389 (432)
T ss_pred             HHHHhhhc---------cccCCCCEEEECCCCCCCCHHHHHHHHhcCCC
Confidence            99976421         2345789999999997666 777877766655

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.18  E-value=1.4e-10  Score=111.54  Aligned_cols=76  Identities=18%  Similarity=0.359  Sum_probs=63.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|+++...++   +++++++|+.+.             ....
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-------------~~~~  205 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-------------IEKQ  205 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-------------CcCC
Confidence            468999999999999999875  5799999999999999999986543   799999998642             1225


Q ss_pred             CccEEEEcCCCccc
Q 023482          217 GFAKVVANIPFNIS  230 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~  230 (281)
                      .||+||+||||...
T Consensus       206 ~fDlIvsNPPYi~~  219 (506)
T PRK01544        206 KFDFIVSNPPYISH  219 (506)
T ss_pred             CccEEEECCCCCCc
Confidence            79999999999653

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.17  E-value=2.9e-10  Score=104.84  Aligned_cols=108  Identities=15%  Similarity=0.156  Sum_probs=82.5

Q ss_pred             HHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhh
Q 023482          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d  207 (281)
                      .++..+....+..+||||||+|.++..+|..  ...++|+|+++.+++.|.++....+  |+.++++|+..+.-.     
T Consensus       113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-----  187 (390)
T PRK14121        113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-----  187 (390)
T ss_pred             HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-----
Confidence            3444445556779999999999999999987  5699999999999999998876554  999999999765210     


Q ss_pred             HHHhhcCCCCccEEEEcCCCccc------------HHHHHHhccCCCCcceEEE
Q 023482          208 LFERRKSSSGFAKVVANIPFNIS------------TDVIKQLLPMGDIFSEVVL  249 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~------------~~~~~~ll~~~~~~~~~~~  249 (281)
                           ...+.+|.|+.|.|..|.            -..+.+++++||.+...+-
T Consensus       188 -----~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD  236 (390)
T PRK14121        188 -----LPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD  236 (390)
T ss_pred             -----CCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence                 234789999999776543            2344588899998765554

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.17  E-value=1.4e-10  Score=100.90  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=84.9

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~  197 (281)
                      ...+.....+...+...++++|||+|||+|+.++.++..   +++|+++|+++++++.|+++++..+   +++++.||+.
T Consensus        51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~  130 (234)
T PLN02781         51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL  130 (234)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence            445566666666666667889999999999999999875   4699999999999999999998664   7999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcC---CCcccHHHHHHhccCCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANI---PFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~---P~~~~~~~~~~ll~~~~~~  244 (281)
                      +.-.     .+... ...+.||.||.+.   +|...-+.+.+++++|+.+
T Consensus       131 ~~L~-----~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~i  174 (234)
T PLN02781        131 SALD-----QLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGII  174 (234)
T ss_pred             HHHH-----HHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEE
Confidence            7410     00000 1136799999984   4544445556778888765

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.16  E-value=5e-10  Score=96.02  Aligned_cols=106  Identities=18%  Similarity=0.149  Sum_probs=73.7

Q ss_pred             HHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc--------------CCCCeEEEEcCccc
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVK  198 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~--------------~~~~v~~~~gD~~~  198 (281)
                      .+..+...++.+|||+|||.|..+..||++|.+|+|||+|+.+++.+.+...              ...+|+++++|+.+
T Consensus        26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~  105 (213)
T TIGR03840        26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA  105 (213)
T ss_pred             HHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC
Confidence            4444433466799999999999999999999999999999999998644321              12379999999998


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEc-----CCCccc---HHHHHHhccCCCCcceEEE
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVAN-----IPFNIS---TDVIKQLLPMGDIFSEVVL  249 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n-----~P~~~~---~~~~~~ll~~~~~~~~~~~  249 (281)
                      ++..           ..+.||.|+..     +|....   -..+.++++++|.+-...+
T Consensus       106 ~~~~-----------~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       106 LTAA-----------DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             CCcc-----------cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            7632           11456666643     332221   2345688899886543433

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.15  E-value=4.3e-10  Score=100.80  Aligned_cols=95  Identities=22%  Similarity=0.226  Sum_probs=71.4

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++.+|||+|||+|.++..++..++ +|+|+|+|+.+++.|+++...++   ++.+..+|...              ...
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--------------~~~  223 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--------------PIE  223 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--------------ccC
Confidence            3678999999999999999988765 89999999999999999987553   56666666322              123


Q ss_pred             CCccEEEEcCCCcccH---HHHHHhccCCCCcceEE
Q 023482          216 SGFAKVVANIPFNIST---DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       216 ~~~d~Vi~n~P~~~~~---~~~~~ll~~~~~~~~~~  248 (281)
                      ++||+|++|.......   +.+.++++++|.+....
T Consensus       224 ~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sg  259 (288)
T TIGR00406       224 GKADVIVANILAEVIKELYPQFSRLVKPGGWLILSG  259 (288)
T ss_pred             CCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            6799999997654333   33457888888774433

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00740 methyltransferase, putative

Probab=99.15  E-value=2.3e-10  Score=99.74  Aligned_cols=94  Identities=18%  Similarity=0.235  Sum_probs=72.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      .++.+|||+|||+|..+..+++.    +.+++|+|+++.|++.|++++...   .+++++++|+.++++           
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------  120 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----------  120 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----------
Confidence            36679999999999999999874    569999999999999999987653   279999999998764           


Q ss_pred             cCCCCccEEEEcCCCcccH--------HHHHHhccCCCCcceE
Q 023482          213 KSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~~~~  247 (281)
                         ..+|+|+++..+++..        ..+.+.++++|.+...
T Consensus       121 ---~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~  160 (239)
T TIGR00740       121 ---KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS  160 (239)
T ss_pred             ---CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence               3468888876554432        2334677888876443

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.15  E-value=2e-10  Score=109.82  Aligned_cols=105  Identities=17%  Similarity=0.260  Sum_probs=79.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHH
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      ...+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++......++++++++|+.+..++       
T Consensus        26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-------   98 (475)
T PLN02336         26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-------   98 (475)
T ss_pred             hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-------
Confidence            4556666666677899999999999999999988899999999999998876544445899999999643211       


Q ss_pred             HhhcCCCCccEEEEcCCCcccH-----HH---HHHhccCCCCc
Q 023482          210 ERRKSSSGFAKVVANIPFNIST-----DV---IKQLLPMGDIF  244 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~~-----~~---~~~ll~~~~~~  244 (281)
                         ...+.||+|+++.++++..     .+   +.++++++|.+
T Consensus        99 ---~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l  138 (475)
T PLN02336         99 ---ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYI  138 (475)
T ss_pred             ---CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEE
Confidence               2236799999998775432     22   34667777765

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.15  E-value=4.4e-10  Score=106.14  Aligned_cols=96  Identities=21%  Similarity=0.273  Sum_probs=78.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCcccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~  199 (281)
                      +..+......+...+.+.++.+|||+|||+|..+..+++..  .+|+|+|+++.+++.++++....+ +++++++|+.+.
T Consensus       226 ~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~  305 (427)
T PRK10901        226 VSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP  305 (427)
T ss_pred             EEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence            44455556666778888899999999999999999999873  599999999999999999998765 688999999875


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +..          .....||.|+.|+|+.
T Consensus       306 ~~~----------~~~~~fD~Vl~D~Pcs  324 (427)
T PRK10901        306 AQW----------WDGQPFDRILLDAPCS  324 (427)
T ss_pred             hhh----------cccCCCCEEEECCCCC
Confidence            310          1235799999999975

>TIGR00452 methyltransferase, putative

Probab=99.15  E-value=7.8e-10  Score=99.96  Aligned_cols=119  Identities=15%  Similarity=0.198  Sum_probs=84.0

Q ss_pred             cCccccCCHHHHHH-----HHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH---hcCCCCe
Q 023482          119 LGQHYMLNSEINDQ-----LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRER---FASIDQL  189 (281)
Q Consensus       119 ~g~~~~~~~~~~~~-----l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~---~~~~~~v  189 (281)
                      +.+ +.++.++...     ++..+...++++|||||||+|+++..++..++ +|+|||+|+.|+.+++..   .....++
T Consensus        95 l~~-~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v  173 (314)
T TIGR00452        95 LSG-IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRA  173 (314)
T ss_pred             ccc-ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCe
Confidence            344 6667666444     44555667789999999999999999998875 799999999999865432   2223478


Q ss_pred             EEEEcCccccccccchhhHHHhhcCCCCccEEEEcCC-CcccH-----HHHHHhccCCCCcceEEEee
Q 023482          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP-FNIST-----DVIKQLLPMGDIFSEVVLLL  251 (281)
Q Consensus       190 ~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P-~~~~~-----~~~~~ll~~~~~~~~~~~~~  251 (281)
                      .+..+|+.+++..             ..||+|+++-- |+...     ..+.+.+++||.+.......
T Consensus       174 ~~~~~~ie~lp~~-------------~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i  228 (314)
T TIGR00452       174 ILEPLGIEQLHEL-------------YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVI  228 (314)
T ss_pred             EEEECCHHHCCCC-------------CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEe
Confidence            8999999887632             47999998743 33322     23357888888875544433

Known examples to date are restricted to the proteobacteria.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.13  E-value=3.9e-10  Score=102.80  Aligned_cols=106  Identities=14%  Similarity=0.220  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccccccc
Q 023482          127 SEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       127 ~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d  203 (281)
                      ..+...+++.+.. .++.+|||||||+|.++..+++.  +.+|+++|++++|++.|+++.. ..+++++.+|+.++++.+
T Consensus        98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp~~~  176 (340)
T PLN02490         98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLPFPT  176 (340)
T ss_pred             HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCCCCC
Confidence            3455556666554 35679999999999999998875  4699999999999999998764 247899999999887543


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFS  245 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~  245 (281)
                                  +.||+|+++..++...      ..+.++++++|.+.
T Consensus       177 ------------~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~Lv  212 (340)
T PLN02490        177 ------------DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC  212 (340)
T ss_pred             ------------CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEE
Confidence                        6789999976554321      33457888888764

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.13  E-value=5.9e-10  Score=101.39  Aligned_cols=105  Identities=19%  Similarity=0.205  Sum_probs=76.8

Q ss_pred             HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHh--c-CCCCeEEEEcCccccccccchh
Q 023482          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF--A-SIDQLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~--~-~~~~v~~~~gD~~~~~~~d~~~  206 (281)
                      +.+...+....+++|||||||+|+++..++..+. .|+|+|+++.++.+++...  . ...+++++.+|+.++++     
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-----  186 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-----  186 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-----
Confidence            4455666666788999999999999999999865 7999999999998654432  2 22489999999998874     


Q ss_pred             hHHHhhcCCCCccEEEEcC-CCcccH-----HHHHHhccCCCCcceEE
Q 023482          207 SLFERRKSSSGFAKVVANI-PFNIST-----DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~-P~~~~~-----~~~~~ll~~~~~~~~~~  248 (281)
                              .+.||+|++.- -|+...     ..+.+.+++||.+....
T Consensus       187 --------~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        187 --------LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             --------cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence                    26789999853 333222     23357778888774433

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.13  E-value=2.3e-10  Score=98.89  Aligned_cols=106  Identities=24%  Similarity=0.350  Sum_probs=79.1

Q ss_pred             HHHHHHHHHhcC---CCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccc
Q 023482          128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (281)
Q Consensus       128 ~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (281)
                      .+...+++.+..   ..+.+|||+|||+|.++..+++.+  .+++++|+++.+++.++++..  .+++++.+|+.+.++.
T Consensus        18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~   95 (240)
T TIGR02072        18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLPLE   95 (240)
T ss_pred             HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCCCC
Confidence            344445444432   345689999999999999999874  578999999999999998776  3889999999988753


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~  247 (281)
                      +            +.||+|+++..+++..      ..+.++++++|.+...
T Consensus        96 ~------------~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~  134 (240)
T TIGR02072        96 D------------SSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFS  134 (240)
T ss_pred             C------------CceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence            2            6799999987665432      3335777888876433

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.13  E-value=8.5e-10  Score=92.88  Aligned_cols=99  Identities=18%  Similarity=0.197  Sum_probs=74.7

Q ss_pred             ccCCHHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~  197 (281)
                      ..++..+.+.+...+. ...+.+|||++||+|.+++.++.+|+ +|++||.++.+++.+++|++..+   +++++++|+.
T Consensus        30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~  109 (189)
T TIGR00095        30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL  109 (189)
T ss_pred             CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence            4555566666666653 23578999999999999999999976 89999999999999999987553   7899999996


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      +.-..     +.   .....+|+|+.+|||..
T Consensus       110 ~~l~~-----~~---~~~~~~dvv~~DPPy~~  133 (189)
T TIGR00095       110 RALKF-----LA---KKPTFDNVIYLDPPFFN  133 (189)
T ss_pred             HHHHH-----hh---ccCCCceEEEECcCCCC
Confidence            53100     00   11235899999999954

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.12  E-value=2.1e-10  Score=102.55  Aligned_cols=120  Identities=28%  Similarity=0.271  Sum_probs=78.6

Q ss_pred             CCCCcccCc-cccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---
Q 023482          113 RFPRKSLGQ-HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---  187 (281)
Q Consensus       113 ~~~~~~~g~-~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---  187 (281)
                      +++...||. +..+.+..++.+-+.  ..++++|||+|||+|.+++..++.|+ +|+|+|+|+.+++.|++|...++   
T Consensus       134 idPg~AFGTG~H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~  211 (295)
T PF06325_consen  134 IDPGMAFGTGHHPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED  211 (295)
T ss_dssp             ESTTSSS-SSHCHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred             ECCCCcccCCCCHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe
Confidence            455566764 233333344444444  34678999999999999999999986 89999999999999999998765   


Q ss_pred             CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHH---HHHHhccCCCCcceEEEe
Q 023482          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD---VIKQLLPMGDIFSEVVLL  250 (281)
Q Consensus       188 ~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~---~~~~ll~~~~~~~~~~~~  250 (281)
                      ++.+.  ...+.              ..+.||+|++|.-......   .+.++++++|.+-..-++
T Consensus       212 ~~~v~--~~~~~--------------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl  261 (295)
T PF06325_consen  212 RIEVS--LSEDL--------------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGIL  261 (295)
T ss_dssp             CEEES--CTSCT--------------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred             eEEEE--Eeccc--------------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcccc
Confidence            44432  22221              1278999999976554443   334667777766444443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK08317 hypothetical protein; Provisional

Probab=99.12  E-value=8.2e-10  Score=95.26  Aligned_cols=106  Identities=23%  Similarity=0.284  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcC-CCCeEEEEcCcccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~-~~~v~~~~gD~~~~~~~d  203 (281)
                      .+.+.+++.+.+.++.+|||+|||+|.++..++..   ..+++|+|+++.+++.++++... ..+++++.+|+.+.++. 
T Consensus         6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-   84 (241)
T PRK08317          6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFP-   84 (241)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCC-
Confidence            34556777788888899999999999999999886   35999999999999999988432 24899999999887753 


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCccc------HHHHHHhccCCCCcc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNIS------TDVIKQLLPMGDIFS  245 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~~------~~~~~~ll~~~~~~~  245 (281)
                                 .+.||.|+++..++..      ...+.++++++|.+.
T Consensus        85 -----------~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  121 (241)
T PRK08317         85 -----------DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVV  121 (241)
T ss_pred             -----------CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEE
Confidence                       2678999987554322      133457778888764

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.11  E-value=1.1e-09  Score=94.26  Aligned_cols=105  Identities=20%  Similarity=0.152  Sum_probs=73.6

Q ss_pred             HHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc--------------CCCCeEEEEcCccc
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVK  198 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~--------------~~~~v~~~~gD~~~  198 (281)
                      .+..+...++.+|||+|||.|..+..||++|.+|+|||+++.+++.+.....              ...+|++.++|+.+
T Consensus        29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~  108 (218)
T PRK13255         29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA  108 (218)
T ss_pred             HHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC
Confidence            3333444466799999999999999999999999999999999998753221              12379999999998


Q ss_pred             cccccchhhHHHhhcCCCCccEEEE-----cCCCcccH---HHHHHhccCCCCcceEE
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVA-----NIPFNIST---DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~-----n~P~~~~~---~~~~~ll~~~~~~~~~~  248 (281)
                      ++..+           .+.||.|+.     .+|.....   ..+.++++++|.+-...
T Consensus       109 l~~~~-----------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~  155 (218)
T PRK13255        109 LTAAD-----------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT  155 (218)
T ss_pred             CCccc-----------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence            85321           246777774     33332222   44567888887643333

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.11  E-value=1.6e-09  Score=92.52  Aligned_cols=112  Identities=21%  Similarity=0.267  Sum_probs=87.3

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEE-cC
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQ-ED  195 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~-gD  195 (281)
                      .+..++....+...+...++++|||||+++|+++++||..   .++++++|+++++.+.|++++++.+   +|+++. ||
T Consensus        41 pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gd  120 (219)
T COG4122          41 PIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD  120 (219)
T ss_pred             CCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCc
Confidence            3344777777777778888899999999999999999985   4699999999999999999998775   688888 58


Q ss_pred             ccccccccchhhHHHhhcCCCCccEEEEcC---CCcccHHHHHHhccCCCCc
Q 023482          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANI---PFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       196 ~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~---P~~~~~~~~~~ll~~~~~~  244 (281)
                      +.+.--.          ...++||.||.+.   .|-..-+....++++|+.+
T Consensus       121 al~~l~~----------~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGli  162 (219)
T COG4122         121 ALDVLSR----------LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLI  162 (219)
T ss_pred             HHHHHHh----------ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEE
Confidence            7764211          1248899999863   3444445566788888865

>PLN02672 methionine S-methyltransferase

Probab=99.10  E-value=3.1e-10  Score=116.07  Aligned_cols=96  Identities=14%  Similarity=0.245  Sum_probs=72.6

Q ss_pred             cCCHHHHHHHHHHhcCC-----CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC----------
Q 023482          124 MLNSEINDQLAAAAAVQ-----EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI----------  186 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~-----~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~----------  186 (281)
                      +.++...+.+++.+...     ++.+|||+|||+|.+++.++..  ..+|+|+|+|+.+++.|+.|...+          
T Consensus        96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~  175 (1082)
T PLN02672         96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY  175 (1082)
T ss_pred             ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence            45555566666654322     2458999999999999999986  369999999999999999998642          


Q ss_pred             --------CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          187 --------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       187 --------~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                              ++++++++|+.+.. .          .....||+||+||||-..
T Consensus       176 ~~~~~~l~~rV~f~~sDl~~~~-~----------~~~~~fDlIVSNPPYI~~  216 (1082)
T PLN02672        176 DGEGKTLLDRVEFYESDLLGYC-R----------DNNIELDRIVGCIPQILN  216 (1082)
T ss_pred             ccccccccccEEEEECchhhhc-c----------ccCCceEEEEECCCcCCC
Confidence                    26999999987642 1          112369999999999543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.10  E-value=5.3e-10  Score=101.10  Aligned_cols=82  Identities=24%  Similarity=0.187  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhcC---CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-------CCeEEEEcCcc
Q 023482          128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDFV  197 (281)
Q Consensus       128 ~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~v~~~~gD~~  197 (281)
                      .+++.+++.+..   .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++.+..       .++++..+|+.
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~  207 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE  207 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence            455666666653   25679999999999999999999999999999999999999987642       26788888876


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVAN  224 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n  224 (281)
                      +++               +.||+|++.
T Consensus       208 ~l~---------------~~fD~Vv~~  219 (315)
T PLN02585        208 SLS---------------GKYDTVTCL  219 (315)
T ss_pred             hcC---------------CCcCEEEEc
Confidence            532               568888875

>PRK06922 hypothetical protein; Provisional

Probab=99.10  E-value=5.9e-10  Score=108.03  Aligned_cols=100  Identities=11%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      ...++.+|||+|||+|..+..+++.  +.+|+|+|+++.|++.|+++.... .+++++++|+.+++..          ..
T Consensus       415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~----------fe  484 (677)
T PRK06922        415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSS----------FE  484 (677)
T ss_pred             hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccc----------cC
Confidence            3346789999999999999888875  579999999999999999876543 3788999999887611          12


Q ss_pred             CCCccEEEEcCCCccc----------------HHHH---HHhccCCCCcceE
Q 023482          215 SSGFAKVVANIPFNIS----------------TDVI---KQLLPMGDIFSEV  247 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~~----------------~~~~---~~ll~~~~~~~~~  247 (281)
                      +++||+|++++++++.                ..++   .+.+++||.+...
T Consensus       485 deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~  536 (677)
T PRK06922        485 KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR  536 (677)
T ss_pred             CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            3679999998776532                1222   3677888877443

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.10  E-value=7.2e-10  Score=100.21  Aligned_cols=85  Identities=15%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-C---CeEEEE-cCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-D---QLKVLQ-EDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~---~v~~~~-gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .+.+|||||||+|.+...++..  +.+++|+|+|+.+++.|++++..+ +   +|+++. .|..++..      .+.  .
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~------~i~--~  185 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFK------GII--H  185 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhh------ccc--c
Confidence            4568999999999888888765  679999999999999999999876 2   677754 33332210      000  1


Q ss_pred             CCCCccEEEEcCCCcccHHH
Q 023482          214 SSSGFAKVVANIPFNISTDV  233 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~~~~~~  233 (281)
                      ..+.||+|++||||+.....
T Consensus       186 ~~~~fDlivcNPPf~~s~~e  205 (321)
T PRK11727        186 KNERFDATLCNPPFHASAAE  205 (321)
T ss_pred             cCCceEEEEeCCCCcCcchh
Confidence            24689999999999876543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.09  E-value=6.5e-10  Score=100.11  Aligned_cols=97  Identities=22%  Similarity=0.293  Sum_probs=87.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEc-Ccccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQE-DFVKC  199 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~g-D~~~~  199 (281)
                      -.++|.++..+++.....+|+.|||.-||||.+.+...-.|++++|.|++..|+.-|+.|++.++  ...++.+ |+.++
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l  258 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL  258 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence            56789999999999999999999999999999999999999999999999999999999999774  6666766 99999


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCcccH
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~  231 (281)
                      |+.+            ..+|.|+.+|||...+
T Consensus       259 pl~~------------~~vdaIatDPPYGrst  278 (347)
T COG1041         259 PLRD------------NSVDAIATDPPYGRST  278 (347)
T ss_pred             CCCC------------CccceEEecCCCCccc
Confidence            9653            4689999999997665

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.09  E-value=5.1e-10  Score=103.42  Aligned_cols=111  Identities=16%  Similarity=0.176  Sum_probs=78.9

Q ss_pred             ccCCHHHHHHHHHH----hcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAA----AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~----l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~  196 (281)
                      |..++...+.+++.    +... +.+|||++||+|.+++.++....+|+|||+++.+++.|++|...++  |++++++|+
T Consensus       185 ~Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~  263 (362)
T PRK05031        185 TQPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA  263 (362)
T ss_pred             eccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH
Confidence            34455544444444    4322 3579999999999999999887799999999999999999987654  899999999


Q ss_pred             cccccccchhhHHHhhc----------CCCCccEEEEcCCCccc-HHHHHHhccC
Q 023482          197 VKCHIRSHMLSLFERRK----------SSSGFAKVVANIPFNIS-TDVIKQLLPM  240 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~----------~~~~~d~Vi~n~P~~~~-~~~~~~ll~~  240 (281)
                      .+.- ..    +... .          ....||+||.+||+... ..++..+.++
T Consensus       264 ~~~l-~~----~~~~-~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~  312 (362)
T PRK05031        264 EEFT-QA----MNGV-REFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAY  312 (362)
T ss_pred             HHHH-HH----Hhhc-ccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHcc
Confidence            7742 10    0000 0          01258999999999653 4566777663

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.09  E-value=8.6e-10  Score=95.18  Aligned_cols=84  Identities=26%  Similarity=0.280  Sum_probs=65.5

Q ss_pred             HHHHHHHHhc---CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482          129 INDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (281)
Q Consensus       129 ~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (281)
                      ....++..+.   ..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++....   +++++..+|+...   
T Consensus        48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---  124 (230)
T PRK07580         48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL---  124 (230)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc---
Confidence            3444555543   346779999999999999999998889999999999999999987654   3789999994321   


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCC
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPF  227 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~  227 (281)
                                  .+.||+|+++..+
T Consensus       125 ------------~~~fD~v~~~~~l  137 (230)
T PRK07580        125 ------------LGRFDTVVCLDVL  137 (230)
T ss_pred             ------------cCCcCEEEEcchh
Confidence                        2678999986554

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=99.09  E-value=4.4e-10  Score=101.69  Aligned_cols=106  Identities=24%  Similarity=0.351  Sum_probs=75.1

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHhc
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN---------AGATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~---------~~~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      ..++..|+ |+++..+++.|.+.+...++.+|+|.+||+|.+...+..         ...+++|+|+++.++..|+.++.
T Consensus        20 ~~~k~~G~-~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~   98 (311)
T PF02384_consen   20 ESRKKLGQ-FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL   98 (311)
T ss_dssp             CTTTSCGG-C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred             Hhccccce-eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence            34556677 899999999999999988888999999999999888876         24699999999999999987754


Q ss_pred             CCC----CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          185 SID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       185 ~~~----~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                      -.+    +..+.++|....+..          .....||+|++||||...
T Consensus        99 l~~~~~~~~~i~~~d~l~~~~~----------~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen   99 LHGIDNSNINIIQGDSLENDKF----------IKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             HTTHHCBGCEEEES-TTTSHSC----------TST--EEEEEEE--CTCE
T ss_pred             hhcccccccccccccccccccc----------ccccccccccCCCCcccc
Confidence            222    456889998765432          113689999999999755

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK04148 hypothetical protein; Provisional

Probab=99.08  E-value=1.2e-09  Score=86.16  Aligned_cols=91  Identities=14%  Similarity=0.255  Sum_probs=72.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      +.+++.+.+...++.+|||||||+|. .+..|++.|.+|+|+|+++..++.++++     .++++.+|+.+-++.     
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~-----   73 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLE-----   73 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHH-----
Confidence            55666666665567899999999996 8889998899999999999999998876     467999999876542     


Q ss_pred             HHHhhcCCCCccEEEE-cCCCcccHHHHH
Q 023482          208 LFERRKSSSGFAKVVA-NIPFNISTDVIK  235 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~-n~P~~~~~~~~~  235 (281)
                      +      ...+|+|.+ +||.....++++
T Consensus        74 ~------y~~a~liysirpp~el~~~~~~   96 (134)
T PRK04148         74 I------YKNAKLIYSIRPPRDLQPFILE   96 (134)
T ss_pred             H------HhcCCEEEEeCCCHHHHHHHHH
Confidence            1      266899998 577777776665

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.08  E-value=7e-10  Score=92.86  Aligned_cols=124  Identities=18%  Similarity=0.402  Sum_probs=84.4

Q ss_pred             ccCCHHHHHHHHHHhcCC--CCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~  196 (281)
                      -.+...+.+.+...+...  .+.++||+.||+|.+++..+.+|+ +|+.||.|+..+..+++|++..+   +++++.+|+
T Consensus        22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~  101 (183)
T PF03602_consen   22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDA  101 (183)
T ss_dssp             -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSH
T ss_pred             CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCH
Confidence            345566777777777753  788999999999999999999976 99999999999999999987554   689999997


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccH---HHHHHhccCCCCcc-eEEEeehhhH
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGDIFS-EVVLLLQEET  255 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~---~~~~~ll~~~~~~~-~~~~~~~~~~  255 (281)
                      ...-..     ..   .....||+|+.+|||....   .++..+.+ .+.+. ...+.++..-
T Consensus       102 ~~~l~~-----~~---~~~~~fDiIflDPPY~~~~~~~~~l~~l~~-~~~l~~~~~ii~E~~~  155 (183)
T PF03602_consen  102 FKFLLK-----LA---KKGEKFDIIFLDPPYAKGLYYEELLELLAE-NNLLNEDGLIIIEHSK  155 (183)
T ss_dssp             HHHHHH-----HH---HCTS-EEEEEE--STTSCHHHHHHHHHHHH-TTSEEEEEEEEEEEET
T ss_pred             HHHHHh-----hc---ccCCCceEEEECCCcccchHHHHHHHHHHH-CCCCCCCEEEEEEecC
Confidence            653210     00   2457899999999998764   35555544 34443 3444444433

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.08  E-value=7.3e-10  Score=102.02  Aligned_cols=113  Identities=13%  Similarity=0.090  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~  204 (281)
                      ..+.+.+.+.+...+ .+|||+|||+|.+++.++....+|+|||+++++++.|++|...++  +++++.+|+.++.....
T Consensus       184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  262 (353)
T TIGR02143       184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMN  262 (353)
T ss_pred             HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHh
Confidence            344555555554333 479999999999999999887799999999999999999987654  89999999977421000


Q ss_pred             h---hhHHHhh-cCCCCccEEEEcCCCccc-HHHHHHhccC
Q 023482          205 M---LSLFERR-KSSSGFAKVVANIPFNIS-TDVIKQLLPM  240 (281)
Q Consensus       205 ~---~d~v~~~-~~~~~~d~Vi~n~P~~~~-~~~~~~ll~~  240 (281)
                      .   ++..... .....||+||.+||.... ..++..+.++
T Consensus       263 ~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~  303 (353)
T TIGR02143       263 GVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAY  303 (353)
T ss_pred             hccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHcC
Confidence            0   0000000 001237999999998653 4565777663

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.07  E-value=7.6e-10  Score=110.44  Aligned_cols=94  Identities=16%  Similarity=0.203  Sum_probs=72.8

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~  197 (281)
                      ++.+++....++..+.  ++++|||+|||+|.+++.++..|+ +|++||+|+.+++.|++|+..++    +++++++|+.
T Consensus       522 ~flDqr~~R~~~~~~~--~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~  599 (702)
T PRK11783        522 LFLDHRPTRRMIGQMA--KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL  599 (702)
T ss_pred             ECHHHHHHHHHHHHhc--CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence            4445544444444433  578999999999999999999876 79999999999999999997552    6899999987


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      +..-           .....||+||.|||+..
T Consensus       600 ~~l~-----------~~~~~fDlIilDPP~f~  620 (702)
T PRK11783        600 AWLK-----------EAREQFDLIFIDPPTFS  620 (702)
T ss_pred             HHHH-----------HcCCCcCEEEECCCCCC
Confidence            6320           11367999999999843

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.06  E-value=5.6e-10  Score=93.04  Aligned_cols=100  Identities=20%  Similarity=0.263  Sum_probs=70.7

Q ss_pred             HhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++-..-.++||+|||+|.+|..|+.+..+++++|+++.+++.|+++....++|+++++|+.+.             .+.
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-------------~P~  104 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-------------WPE  104 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----------------S
T ss_pred             hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-------------CCC
Confidence            4554444689999999999999999998899999999999999999999888999999999775             334


Q ss_pred             CCccEEEEc-CCCcccH-HHHH-------HhccCCCCcceEE
Q 023482          216 SGFAKVVAN-IPFNIST-DVIK-------QLLPMGDIFSEVV  248 (281)
Q Consensus       216 ~~~d~Vi~n-~P~~~~~-~~~~-------~ll~~~~~~~~~~  248 (281)
                      +.||+|+.. .-|+... +.+.       ..+.++|.+-.+.
T Consensus       105 ~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~  146 (201)
T PF05401_consen  105 GRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH  146 (201)
T ss_dssp             S-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            788888865 5565542 3332       4457777664444

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.05  E-value=3e-09  Score=91.95  Aligned_cols=107  Identities=20%  Similarity=0.285  Sum_probs=80.7

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcccc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~  199 (281)
                      ...+...++..+...++.+|||+|||+|..+..++...   .+++++|+++.+++.++++....   .+++++.+|+.+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  115 (239)
T PRK00216         36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL  115 (239)
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence            44566677777777777899999999999999998874   79999999999999999987652   4799999999887


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCcc---cHHH---HHHhccCCCCc
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNI---STDV---IKQLLPMGDIF  244 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~---~~~~---~~~ll~~~~~~  244 (281)
                      ++.            .+.||+|+.+.-++.   ...+   +.++++++|.+
T Consensus       116 ~~~------------~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~l  154 (239)
T PRK00216        116 PFP------------DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRL  154 (239)
T ss_pred             CCC------------CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEE
Confidence            643            256888887533221   1222   34667777765

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.04  E-value=2.4e-09  Score=93.44  Aligned_cols=112  Identities=22%  Similarity=0.281  Sum_probs=80.8

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~  197 (281)
                      +.-+.-+..++..+++.+|.+|||.|+|+|.++..|+..   .++|+..|+.++.++.|+++++..+   ++++.+.|+.
T Consensus        23 IiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~  102 (247)
T PF08704_consen   23 IIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC  102 (247)
T ss_dssp             ---HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred             eeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence            344556788999999999999999999999999999986   4699999999999999999998763   8999999997


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcc-cHHHHHHhc-cCCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLL-PMGDIF  244 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-~~~~~~~ll-~~~~~~  244 (281)
                      +..+..         .....+|.||.++|--| .-+-+.+.| ++|+.+
T Consensus       103 ~~g~~~---------~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i  142 (247)
T PF08704_consen  103 EEGFDE---------ELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRI  142 (247)
T ss_dssp             CG--ST---------T-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEE
T ss_pred             cccccc---------cccCcccEEEEeCCCHHHHHHHHHHHHhcCCceE
Confidence            644421         11257999999987655 334555666 667665

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.04  E-value=3.7e-09  Score=85.34  Aligned_cols=104  Identities=22%  Similarity=0.385  Sum_probs=86.3

Q ss_pred             CCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCCCe
Q 023482          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQL  189 (281)
Q Consensus       113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~v  189 (281)
                      +...+..|....+..-+++.|...+....+.-|||+|.|||.+|.++..++   ..++++|.|++.+....+.+.   .+
T Consensus        20 i~~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---~~   96 (194)
T COG3963          20 IDNPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---GV   96 (194)
T ss_pred             hcCCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---Cc
Confidence            344455666677788899999999999999999999999999999999985   489999999999999988876   56


Q ss_pred             EEEEcCccccc--cccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          190 KVLQEDFVKCH--IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       190 ~~~~gD~~~~~--~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      ++++||+.++.  ..+         ..+..||.||+.+|+-
T Consensus        97 ~ii~gda~~l~~~l~e---------~~gq~~D~viS~lPll  128 (194)
T COG3963          97 NIINGDAFDLRTTLGE---------HKGQFFDSVISGLPLL  128 (194)
T ss_pred             cccccchhhHHHHHhh---------cCCCeeeeEEeccccc
Confidence            79999998875  211         4567899999987763

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.04  E-value=1.9e-09  Score=102.26  Aligned_cols=95  Identities=21%  Similarity=0.319  Sum_probs=75.9

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~  197 (281)
                      +..+......+...+.+.++++|||+|||+|..+..+++.   .++|+++|+++.+++.+++++.+.+  +++++++|+.
T Consensus       232 ~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~  311 (444)
T PRK14902        232 ITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDAR  311 (444)
T ss_pred             EEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence            3444444555666777888899999999999999999885   4699999999999999999987664  7999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +++..          . .+.||.|+.|+|+.
T Consensus       312 ~~~~~----------~-~~~fD~Vl~D~Pcs  331 (444)
T PRK14902        312 KVHEK----------F-AEKFDKILVDAPCS  331 (444)
T ss_pred             cccch----------h-cccCCEEEEcCCCC
Confidence            76311          1 15799999999964

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.04  E-value=3.2e-09  Score=90.82  Aligned_cols=107  Identities=16%  Similarity=0.212  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d  203 (281)
                      ..+...+++.+...++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++.....+++++++|+.+.++. 
T Consensus        25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-  103 (223)
T TIGR01934        25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFE-  103 (223)
T ss_pred             HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCC-
Confidence            4556667777766678899999999999999998873   489999999999999998876334899999999987643 


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCccc---H---HHHHHhccCCCCcc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNIS---T---DVIKQLLPMGDIFS  245 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~~---~---~~~~~ll~~~~~~~  245 (281)
                                 .+.||+|+++..++..   .   ..+.++++++|.+.
T Consensus       104 -----------~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  140 (223)
T TIGR01934       104 -----------DNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLV  140 (223)
T ss_pred             -----------CCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEE
Confidence                       2568988876433221   2   23347778888764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.02  E-value=1.3e-09  Score=96.49  Aligned_cols=94  Identities=13%  Similarity=0.136  Sum_probs=74.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~  197 (281)
                      ++.+..........+.+.++.+|||+|||+|..+..+++.   .++|+++|+++.+++.++++++..+  +++++++|+.
T Consensus        53 ~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~  132 (264)
T TIGR00446        53 YYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGR  132 (264)
T ss_pred             EEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHH
Confidence            3333333333445667788899999999999999999885   3599999999999999999998764  8999999987


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +++.            ..+.||+|+.++|..
T Consensus       133 ~~~~------------~~~~fD~Vl~D~Pcs  151 (264)
T TIGR00446       133 VFGA------------AVPKFDAILLDAPCS  151 (264)
T ss_pred             Hhhh------------hccCCCEEEEcCCCC
Confidence            7642            124699999999975

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.02  E-value=2.2e-09  Score=94.25  Aligned_cols=91  Identities=27%  Similarity=0.242  Sum_probs=64.1

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++...++ +.    +...++.            ....|
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~----~~~~~~~------------~~~~f  180 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VE----LNVYLPQ------------GDLKA  180 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CC----ceEEEcc------------CCCCc
Confidence            4678999999999999998888765 69999999999999999987543 10    1111111            01258


Q ss_pred             cEEEEcCCCcccH---HHHHHhccCCCCcceE
Q 023482          219 AKVVANIPFNIST---DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       219 d~Vi~n~P~~~~~---~~~~~ll~~~~~~~~~  247 (281)
                      |+|++|.......   +.+.++++++|.+-..
T Consensus       181 D~Vvani~~~~~~~l~~~~~~~LkpgG~lils  212 (250)
T PRK00517        181 DVIVANILANPLLELAPDLARLLKPGGRLILS  212 (250)
T ss_pred             CEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9999997654333   3345668888876443

>PRK06202 hypothetical protein; Provisional

Probab=99.02  E-value=1.6e-09  Score=93.95  Aligned_cols=80  Identities=23%  Similarity=0.186  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc----C--CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      ..++.+|||+|||+|.++..++..    +  .+|+|+|++++|++.|+++... .++++..+++..++..          
T Consensus        58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~~~----------  126 (232)
T PRK06202         58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELVAE----------  126 (232)
T ss_pred             CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEeccccccc----------
Confidence            346679999999999999888752    3  4999999999999999887643 3677777777666532          


Q ss_pred             cCCCCccEEEEcCCCcccH
Q 023482          213 KSSSGFAKVVANIPFNIST  231 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~~  231 (281)
                        .++||+|+++..+++..
T Consensus       127 --~~~fD~V~~~~~lhh~~  143 (232)
T PRK06202        127 --GERFDVVTSNHFLHHLD  143 (232)
T ss_pred             --CCCccEEEECCeeecCC
Confidence              36799999997765443

>PLN02476 O-methyltransferase

Probab=99.02  E-value=2.5e-09  Score=94.71  Aligned_cols=116  Identities=13%  Similarity=0.216  Sum_probs=87.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~  196 (281)
                      ....+.....+...+...++++|||||||+|++++.++..   +++|+++|.+++.++.|++++++.+   +|+++.||+
T Consensus       100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA  179 (278)
T PLN02476        100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA  179 (278)
T ss_pred             cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            4567777777777777778899999999999999999974   5689999999999999999998764   899999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccH---HHHHHhccCCCCc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGDIF  244 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~---~~~~~ll~~~~~~  244 (281)
                      .+.-.     .+... ...+.||.||.+.+-....   +...+++++||.+
T Consensus       180 ~e~L~-----~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvI  224 (278)
T PLN02476        180 AESLK-----SMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVI  224 (278)
T ss_pred             HHHHH-----HHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEE
Confidence            77411     00000 1135799999987643222   3445677788765

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.01  E-value=1.9e-09  Score=93.43  Aligned_cols=99  Identities=20%  Similarity=0.308  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhc---CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccc
Q 023482          127 SEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (281)
Q Consensus       127 ~~~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~  198 (281)
                      .++++.+++.+.   ...+..|||+|||+|.++..++..  .+.|+|||.++.++..|.+|..++   +.+.+++-+.+.
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~  210 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES  210 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence            345666666554   234568999999999999999886  569999999999999999998765   478888665543


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcccHH
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD  232 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~  232 (281)
                      --+..+.       ...+..|++++||||-...+
T Consensus       211 d~~~~~~-------l~~~~~dllvsNPPYI~~dD  237 (328)
T KOG2904|consen  211 DASDEHP-------LLEGKIDLLVSNPPYIRKDD  237 (328)
T ss_pred             ccccccc-------cccCceeEEecCCCcccccc
Confidence            2211100       12378999999999965554

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.01  E-value=3e-09  Score=92.14  Aligned_cols=108  Identities=17%  Similarity=0.175  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccch
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~  205 (281)
                      +..+..+...+...++.+|||||||+|.++..+++.+.+++++|+++.+++.++++....+ +++++.+|+.+++.    
T Consensus        34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----  109 (233)
T PRK05134         34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAA----  109 (233)
T ss_pred             HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhh----
Confidence            3445566666656678899999999999999999888899999999999999998876443 67888888876542    


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCccc---H---HHHHHhccCCCCcc
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNIS---T---DVIKQLLPMGDIFS  245 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~~---~---~~~~~ll~~~~~~~  245 (281)
                             ...+.||+|+++..+...   .   ..+.+++.++|.+.
T Consensus       110 -------~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~  148 (233)
T PRK05134        110 -------EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVF  148 (233)
T ss_pred             -------hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEE
Confidence                   123679999886443321   1   23346777777653

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.98  E-value=1.9e-09  Score=104.48  Aligned_cols=105  Identities=13%  Similarity=0.242  Sum_probs=78.5

Q ss_pred             ccCccccCCHHHHHHHHHHhcCC-------CCCEEEEEcCCccHHHHHHHHcC----------CEEEEEeCCHHHHHHHH
Q 023482          118 SLGQHYMLNSEINDQLAAAAAVQ-------EGDIVLEIGPGTGSLTNVLLNAG----------ATVLAIEKDQHMVGLVR  180 (281)
Q Consensus       118 ~~g~~~~~~~~~~~~l~~~l~~~-------~~~~VLDiGcG~G~~t~~la~~~----------~~v~gvD~s~~~l~~a~  180 (281)
                      ..|+ |++++.+++.|++.+...       ...+|||.|||+|.+...++...          .+++|+|+++.++..++
T Consensus         2 ~~Gq-fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~   80 (524)
T TIGR02987         2 AYGT-FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK   80 (524)
T ss_pred             CCcc-cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence            3567 999999999999887432       33589999999999998887631          47899999999999999


Q ss_pred             HHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          181 ERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       181 ~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                      .++...+  .+.+.++|.....+....       ...+.||+||+||||...
T Consensus        81 ~~l~~~~~~~~~i~~~d~l~~~~~~~~-------~~~~~fD~IIgNPPy~~~  125 (524)
T TIGR02987        81 KLLGEFALLEINVINFNSLSYVLLNIE-------SYLDLFDIVITNPPYGRL  125 (524)
T ss_pred             HHHhhcCCCCceeeecccccccccccc-------cccCcccEEEeCCCcccc
Confidence            8876554  566777776543221000       123579999999999753

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.98  E-value=2.1e-09  Score=92.56  Aligned_cols=92  Identities=17%  Similarity=0.144  Sum_probs=70.3

Q ss_pred             CEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ++|||||||+|..+..+++.  +.+|+|+|+|+.+++.+++++...   ++++++.+|+.+.+++             +.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-------------~~   67 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-------------DT   67 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-------------CC
Confidence            37999999999999999886  469999999999999999988653   3789999999766532             46


Q ss_pred             ccEEEEcCCCcc------cHHHHHHhccCCCCcceE
Q 023482          218 FAKVVANIPFNI------STDVIKQLLPMGDIFSEV  247 (281)
Q Consensus       218 ~d~Vi~n~P~~~------~~~~~~~ll~~~~~~~~~  247 (281)
                      ||+|+++..++.      .-..+.++++++|.+...
T Consensus        68 fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~  103 (224)
T smart00828       68 YDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLA  103 (224)
T ss_pred             CCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEE
Confidence            899988533221      113345788888876543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.97  E-value=2.5e-09  Score=100.95  Aligned_cols=95  Identities=14%  Similarity=0.245  Sum_probs=76.8

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~  197 (281)
                      ++.+......+...+.+.++.+|||+|||+|..|..++..   +++|+++|+++.+++.+++++.+.+  +++++++|+.
T Consensus       219 ~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~  298 (431)
T PRK14903        219 ATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE  298 (431)
T ss_pred             EEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence            4444445555666778888999999999999999999886   4699999999999999999988664  7899999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +++.           ...+.||.|+.++|..
T Consensus       299 ~l~~-----------~~~~~fD~Vl~DaPCs  318 (431)
T PRK14903        299 RLTE-----------YVQDTFDRILVDAPCT  318 (431)
T ss_pred             hhhh-----------hhhccCCEEEECCCCC
Confidence            7641           1125799999999983

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.97  E-value=7.8e-11  Score=88.34  Aligned_cols=75  Identities=28%  Similarity=0.374  Sum_probs=47.5

Q ss_pred             EEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEE
Q 023482          146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (281)
Q Consensus       146 LDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~V  221 (281)
                      ||||||+|.++..+++.  ..+++|+|+|+.|++.|++++....  +...+..+..+....          ...+.||+|
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~fD~V   70 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY----------DPPESFDLV   70 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C----------CC----SEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc----------cccccccee
Confidence            79999999999999988  6799999999999988888877554  444444444443211          112589999


Q ss_pred             EEcCCCccc
Q 023482          222 VANIPFNIS  230 (281)
Q Consensus       222 i~n~P~~~~  230 (281)
                      +++..+++.
T Consensus        71 ~~~~vl~~l   79 (99)
T PF08242_consen   71 VASNVLHHL   79 (99)
T ss_dssp             EEE-TTS--
T ss_pred             hhhhhHhhh
Confidence            998666554

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.97  E-value=3.6e-09  Score=90.01  Aligned_cols=113  Identities=22%  Similarity=0.242  Sum_probs=77.6

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~  199 (281)
                      .+.....+...+....+++||||||++|++++.|+..   +++|+++|++++..+.|++++...+   +|+++.||+.+.
T Consensus        30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~  109 (205)
T PF01596_consen   30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV  109 (205)
T ss_dssp             HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH
T ss_pred             CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh
Confidence            3444444444444456789999999999999999985   6799999999999999999998664   899999999874


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCcccHH---HHHHhccCCCCc
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTD---VIKQLLPMGDIF  244 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~---~~~~ll~~~~~~  244 (281)
                      -..     +... ...+.||.||.+-.-.....   .+.+++++|+.+
T Consensus       110 l~~-----l~~~-~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvi  151 (205)
T PF01596_consen  110 LPE-----LAND-GEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVI  151 (205)
T ss_dssp             HHH-----HHHT-TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEE
T ss_pred             HHH-----HHhc-cCCCceeEEEEcccccchhhHHHHHhhhccCCeEE
Confidence            110     0000 11357999999865433333   334666666544

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.96  E-value=2.2e-09  Score=98.87  Aligned_cols=113  Identities=17%  Similarity=0.168  Sum_probs=73.8

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccc
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR  202 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~  202 (281)
                      ....+.+.++++++..++ .|||+-||+|.+++.||....+|+|||+++.+++.|+.|...++  |++|+.+++.++...
T Consensus       181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~  259 (352)
T PF05958_consen  181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKA  259 (352)
T ss_dssp             HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCH
T ss_pred             HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHH
Confidence            334556666666776655 89999999999999999999999999999999999999998665  999999998775321


Q ss_pred             cc---hhhHHHhh-cCCCCccEEEEcCCCcccHHHHHHhc
Q 023482          203 SH---MLSLFERR-KSSSGFAKVVANIPFNISTDVIKQLL  238 (281)
Q Consensus       203 d~---~~d~v~~~-~~~~~~d~Vi~n~P~~~~~~~~~~ll  238 (281)
                      -.   .++.+... .....+|+|+.+||.....+.+..++
T Consensus       260 ~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~  299 (352)
T PF05958_consen  260 LAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI  299 (352)
T ss_dssp             HCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred             HHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence            00   01101000 12236899999999976665444343

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.96  E-value=1.9e-09  Score=91.29  Aligned_cols=110  Identities=21%  Similarity=0.322  Sum_probs=70.0

Q ss_pred             cCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEE
Q 023482          119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID---QLKVLQ  193 (281)
Q Consensus       119 ~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~--~~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~  193 (281)
                      +...|+.+....++..-.-...++..|+|+.||.|.+++.+|+  .+..|+++|++|.+++.++++...++   ++.+++
T Consensus        79 ~~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~  158 (200)
T PF02475_consen   79 LSKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVIN  158 (200)
T ss_dssp             TTTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEE
T ss_pred             cceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEc
Confidence            3444544444433332222355789999999999999999999  46799999999999999999987653   799999


Q ss_pred             cCccccccccchhhHHHhhcCCCCccEEEEcCCCcc--cHHHHHHhccCC
Q 023482          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMG  241 (281)
Q Consensus       194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~--~~~~~~~ll~~~  241 (281)
                      +|+.++..             ...+|.|++|+|...  .-+....+++.+
T Consensus       159 ~D~~~~~~-------------~~~~drvim~lp~~~~~fl~~~~~~~~~~  195 (200)
T PF02475_consen  159 GDAREFLP-------------EGKFDRVIMNLPESSLEFLDAALSLLKEG  195 (200)
T ss_dssp             S-GGG----------------TT-EEEEEE--TSSGGGGHHHHHHHEEEE
T ss_pred             CCHHHhcC-------------ccccCEEEECChHHHHHHHHHHHHHhcCC
Confidence            99998752             478999999999643  223344555544

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=6.7e-09  Score=89.61  Aligned_cols=105  Identities=20%  Similarity=0.279  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~  200 (281)
                      |.-+..++..+++.++.+|+|.|.|+|.++..|+..   .++|+++|+.++.++.|++|++..+   ++++..+|+.+.-
T Consensus        80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~  159 (256)
T COG2519          80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI  159 (256)
T ss_pred             CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence            344677888999999999999999999999999975   3699999999999999999998753   5999999998864


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcccH-HHHHHhccCCCCc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLLPMGDIF  244 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-~~~~~ll~~~~~~  244 (281)
                      +             ...+|+||.++|--|.. +-+..++++++.+
T Consensus       160 ~-------------~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~  191 (256)
T COG2519         160 D-------------EEDVDAVFLDLPDPWNVLEHVSDALKPGGVV  191 (256)
T ss_pred             c-------------ccccCEEEEcCCChHHHHHHHHHHhCCCcEE
Confidence            3             24789999998754433 4445677777654

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.95  E-value=4.1e-09  Score=100.05  Aligned_cols=92  Identities=10%  Similarity=0.193  Sum_probs=74.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~  197 (281)
                      +..+..........+.+.++++|||+|||+|..+..+++.   +++|+|+|+++.+++.+++++...+  +++++++|+.
T Consensus       232 ~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~  311 (445)
T PRK14904        232 VSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDAR  311 (445)
T ss_pred             EEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccc
Confidence            3444444445556677778899999999999999988874   4599999999999999999987664  7999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCC
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~  227 (281)
                      +++             ....||+|+.++|.
T Consensus       312 ~~~-------------~~~~fD~Vl~D~Pc  328 (445)
T PRK14904        312 SFS-------------PEEQPDAILLDAPC  328 (445)
T ss_pred             ccc-------------cCCCCCEEEEcCCC
Confidence            764             12579999999886

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.94  E-value=3.8e-09  Score=100.00  Aligned_cols=98  Identities=13%  Similarity=0.247  Sum_probs=77.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~  197 (281)
                      +..+......+...+.+.++++|||+|||+|..+..+++.   .++|+++|+++.+++.+++++...+  +++++++|+.
T Consensus       234 ~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~  313 (434)
T PRK14901        234 WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR  313 (434)
T ss_pred             EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh
Confidence            4444455556666788888999999999999999999886   3599999999999999999988765  7999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +++....        ...+.||.|+.++|..
T Consensus       314 ~~~~~~~--------~~~~~fD~Vl~DaPCS  336 (434)
T PRK14901        314 NLLELKP--------QWRGYFDRILLDAPCS  336 (434)
T ss_pred             hcccccc--------cccccCCEEEEeCCCC
Confidence            7641100        0125799999998853

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.93  E-value=1.9e-09  Score=88.04  Aligned_cols=80  Identities=21%  Similarity=0.214  Sum_probs=57.8

Q ss_pred             CEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      ..|+|+.||.|..++.+|+...+|++||+|+..++.|+.|..-++   +|++++||+.++...-         .....+|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~---------~~~~~~D   71 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRL---------KSNKIFD   71 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------------S
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhc---------ccccccc
Confidence            369999999999999999998899999999999999999988765   8999999998853210         1112279


Q ss_pred             EEEEcCCCcccH
Q 023482          220 KVVANIPFNIST  231 (281)
Q Consensus       220 ~Vi~n~P~~~~~  231 (281)
                      +|+.+||+....
T Consensus        72 ~vFlSPPWGGp~   83 (163)
T PF09445_consen   72 VVFLSPPWGGPS   83 (163)
T ss_dssp             EEEE---BSSGG
T ss_pred             EEEECCCCCCcc
Confidence            999999987533

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.93  E-value=8.6e-09  Score=88.60  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=77.5

Q ss_pred             CHHHHHHHHHHhcC----CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcccc
Q 023482          126 NSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC  199 (281)
Q Consensus       126 ~~~~~~~l~~~l~~----~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~  199 (281)
                      ++..+.++...+..    ..+.+|||+|||+|.++..+++.+.+++++|+++.+++.++.+....+  ++++.++|+.+.
T Consensus        26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~  105 (224)
T TIGR01983        26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDL  105 (224)
T ss_pred             hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh
Confidence            33344555555542    347799999999999999999888899999999999999998876543  589999998877


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCccc---H---HHHHHhccCCCCc
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS---T---DVIKQLLPMGDIF  244 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~---~---~~~~~ll~~~~~~  244 (281)
                      +..           ..+.||+|+++..++..   .   ..+.++++++|.+
T Consensus       106 ~~~-----------~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l  145 (224)
T TIGR01983       106 AEK-----------GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGIL  145 (224)
T ss_pred             hcC-----------CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEE
Confidence            532           13679999886433221   1   2334666777754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.92  E-value=1.6e-08  Score=83.94  Aligned_cols=99  Identities=24%  Similarity=0.376  Sum_probs=78.6

Q ss_pred             cCCHHHHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcc
Q 023482          124 MLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~  197 (281)
                      .+...+.+.+...+..  -.+.++||+.+|+|.+++..+.+|+ .++.||.|..++..+++|++..   ++++++..|+.
T Consensus        24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~  103 (187)
T COG0742          24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL  103 (187)
T ss_pred             CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH
Confidence            4445667777777765  4788999999999999999999976 9999999999999999998754   38999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcccH
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~  231 (281)
                      ..-.         .+.....||+|+.+|||+...
T Consensus       104 ~~L~---------~~~~~~~FDlVflDPPy~~~l  128 (187)
T COG0742         104 RALK---------QLGTREPFDLVFLDPPYAKGL  128 (187)
T ss_pred             HHHH---------hcCCCCcccEEEeCCCCccch
Confidence            4311         002223599999999998544

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.92  E-value=3.2e-09  Score=89.35  Aligned_cols=86  Identities=20%  Similarity=0.326  Sum_probs=66.5

Q ss_pred             ccCCHHHHHHHHHHhcCCC--CCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcc-cc
Q 023482          123 YMLNSEINDQLAAAAAVQE--GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFV-KC  199 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~--~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~-~~  199 (281)
                      ..++.++.++.++.+.+..  +.-|||||||+|..+..+...|...+|+|+|+.|++.|.+..-+   -.++.+|+- -+
T Consensus        30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e---gdlil~DMG~Gl  106 (270)
T KOG1541|consen   30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE---GDLILCDMGEGL  106 (270)
T ss_pred             eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh---cCeeeeecCCCC
Confidence            3455677888888887766  56899999999999999999999999999999999999863221   247777764 46


Q ss_pred             ccccchhhHHHhhcCCCCccEEEE
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVA  223 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~  223 (281)
                      ||..            +.||.+|+
T Consensus       107 pfrp------------GtFDg~IS  118 (270)
T KOG1541|consen  107 PFRP------------GTFDGVIS  118 (270)
T ss_pred             CCCC------------CccceEEE
Confidence            7654            66676665

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.92  E-value=1e-08  Score=87.69  Aligned_cols=95  Identities=23%  Similarity=0.341  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +.++.+|||+|||+|.++..+++.   ..+|+|||+++ +        ....+++++++|+.+.+..+.   +... ...
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~---i~~~-~~~  115 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKA---LLER-VGD  115 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHH---HHHH-hCC
Confidence            357789999999999999999887   25999999998 2        122479999999987542110   0000 234


Q ss_pred             CCccEEEEcC-CCccc----------------HHHHHHhccCCCCcce
Q 023482          216 SGFAKVVANI-PFNIS----------------TDVIKQLLPMGDIFSE  246 (281)
Q Consensus       216 ~~~d~Vi~n~-P~~~~----------------~~~~~~ll~~~~~~~~  246 (281)
                      +.+|+|++|+ |+...                -....+++++||.+..
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi  163 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV  163 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            6799999986 32211                1334578888887744

>PRK00811 spermidine synthase; Provisional

Probab=98.92  E-value=7.7e-09  Score=92.48  Aligned_cols=95  Identities=20%  Similarity=0.323  Sum_probs=72.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcC-------CCCeEEEEcCccccccccchhhHHH
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~-------~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      ..+++||+||||+|.++..+++. + .+|++||+|+.+++.|++.+..       .++++++.+|+.+.-.         
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~---------  145 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA---------  145 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh---------
Confidence            35679999999999999999887 3 5999999999999999998752       3489999999987421         


Q ss_pred             hhcCCCCccEEEEcC--CCccc-----H---HHHHHhccCCCCcc
Q 023482          211 RRKSSSGFAKVVANI--PFNIS-----T---DVIKQLLPMGDIFS  245 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~--P~~~~-----~---~~~~~ll~~~~~~~  245 (281)
                        ...+.||+||++.  |+...     .   ..+++.|+++|.+.
T Consensus       146 --~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv  188 (283)
T PRK00811        146 --ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFV  188 (283)
T ss_pred             --hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence              2246899999974  44222     1   23457778888763

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.91  E-value=5.4e-09  Score=86.97  Aligned_cols=90  Identities=23%  Similarity=0.366  Sum_probs=65.1

Q ss_pred             HHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc--ccccchhhHH
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC--HIRSHMLSLF  209 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~--~~~d~~~d~v  209 (281)
                      +.+++.  ++.+|||+|||.|.+...|.+. +.+.+|||++++.+..+.++     .+.++++|+.+-  .++       
T Consensus         7 I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~-------   72 (193)
T PF07021_consen    7 IAEWIE--PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFP-------   72 (193)
T ss_pred             HHHHcC--CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCC-------
Confidence            444444  7889999999999999999885 78999999999999888765     678999999773  233       


Q ss_pred             HhhcCCCCccEEEEcCCCc---ccHHHHHHhccCC
Q 023482          210 ERRKSSSGFAKVVANIPFN---ISTDVIKQLLPMG  241 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~---~~~~~~~~ll~~~  241 (281)
                           +++||.||.+-..+   .+..++..++.-+
T Consensus        73 -----d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVg  102 (193)
T PF07021_consen   73 -----DQSFDYVILSQTLQAVRRPDEVLEEMLRVG  102 (193)
T ss_pred             -----CCCccEEehHhHHHhHhHHHHHHHHHHHhc
Confidence                 36677777764332   2234444554433

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.90  E-value=3e-08  Score=85.42  Aligned_cols=114  Identities=13%  Similarity=0.130  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc--------------CCCCeE
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLK  190 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~--------------~~~~v~  190 (281)
                      .++.+.+.+ ..+...++.+||.+|||.|.-+..|+.+|.+|+|+|+|+.+++.+.+...              ...+++
T Consensus        28 pnp~L~~~~-~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~  106 (226)
T PRK13256         28 PNEFLVKHF-SKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE  106 (226)
T ss_pred             CCHHHHHHH-HhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence            344455554 33444466799999999999999999999999999999999999866321              123899


Q ss_pred             EEEcCccccccccchhhHHHhhcCCCCccEEEEc-----CCCcccH---HHHHHhccCCCCcceEE
Q 023482          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-----IPFNIST---DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       191 ~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n-----~P~~~~~---~~~~~ll~~~~~~~~~~  248 (281)
                      ++++|+.+++...         ...+.||.|+--     +|-....   ..+.+++++++.+-...
T Consensus       107 ~~~gD~f~l~~~~---------~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        107 IYVADIFNLPKIA---------NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             EEEccCcCCCccc---------cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            9999999986421         112467776653     3332222   33457788887754433

>PRK04457 spermidine synthase; Provisional

Probab=98.90  E-value=1.4e-08  Score=89.76  Aligned_cols=107  Identities=16%  Similarity=0.233  Sum_probs=74.9

Q ss_pred             HHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482          129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (281)
Q Consensus       129 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (281)
                      +...|...+. ..++.+|||||||+|.++..+++.  +.++++||+++++++.|++++...   ++++++.+|+.+.-. 
T Consensus        53 y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~-  131 (262)
T PRK04457         53 YTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA-  131 (262)
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH-
Confidence            3444433332 335678999999999999999876  569999999999999999987632   489999999876421 


Q ss_pred             cchhhHHHhhcCCCCccEEEEcC------CCcc-cH---HHHHHhccCCCCcce
Q 023482          203 SHMLSLFERRKSSSGFAKVVANI------PFNI-ST---DVIKQLLPMGDIFSE  246 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~------P~~~-~~---~~~~~ll~~~~~~~~  246 (281)
                                ...+.||+|+.+.      |.+. ..   ..+.+.++++|.+..
T Consensus       132 ----------~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi  175 (262)
T PRK04457        132 ----------VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV  175 (262)
T ss_pred             ----------hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence                      1235789999763      1111 12   233477788887643

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.89  E-value=6.5e-09  Score=84.16  Aligned_cols=92  Identities=21%  Similarity=0.233  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      ..++.+|||||||+|.++..+++.+.+++|+|+++.+++.        .++.....+....+            ...+.|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~------------~~~~~f   79 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPP------------FPDGSF   79 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHH------------CHSSSE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhh------------ccccch
Confidence            4577899999999999999998888999999999999988        13334444333332            234789


Q ss_pred             cEEEEcCCCcccH------HHHHHhccCCCCcceEEEe
Q 023482          219 AKVVANIPFNIST------DVIKQLLPMGDIFSEVVLL  250 (281)
Q Consensus       219 d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~~~~  250 (281)
                      |+|+++--+++..      ..+.++++++|.+-.....
T Consensus        80 D~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   80 DLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             EEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             hhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            9999976554433      2334777777776444433

...

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.89  E-value=7.7e-09  Score=87.29  Aligned_cols=93  Identities=23%  Similarity=0.346  Sum_probs=67.4

Q ss_pred             HHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccc-cccccchhhHH
Q 023482          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-CHIRSHMLSLF  209 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~-~~~~d~~~d~v  209 (281)
                      .+.+.+.  ++.+|||+|||+|.++..+++. +..++|+|+++++++.++.+     +++++++|+.+ ++.        
T Consensus         6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~--------   70 (194)
T TIGR02081         6 SILNLIP--PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEA--------   70 (194)
T ss_pred             HHHHhcC--CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccc--------
Confidence            3444443  5679999999999999999876 56899999999999988652     57889999875 321        


Q ss_pred             HhhcCCCCccEEEEcCCCcccH---HHHHHhccCCC
Q 023482          210 ERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGD  242 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~~---~~~~~ll~~~~  242 (281)
                         ...++||+|+++..+++..   ..++.+.+..+
T Consensus        71 ---~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~  103 (194)
T TIGR02081        71 ---FPDKSFDYVILSQTLQATRNPEEILDEMLRVGR  103 (194)
T ss_pred             ---cCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence               1236799999997765443   34555555444

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.86  E-value=1.2e-08  Score=93.12  Aligned_cols=94  Identities=13%  Similarity=0.149  Sum_probs=79.3

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC---------------------------------------
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA---------------------------------------  164 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~---------------------------------------  164 (281)
                      .....++..|+...+..++..++|.-||+|.+++..|..+.                                       
T Consensus       174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~  253 (381)
T COG0116         174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE  253 (381)
T ss_pred             CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence            44567788888888888888999999999999998887643                                       


Q ss_pred             --EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          165 --TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       165 --~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                        .++|+|+|+.+++.|+.|..+.+   -|+|.++|+.++.-            ....+|+||+||||..
T Consensus       254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~------------~~~~~gvvI~NPPYGe  311 (381)
T COG0116         254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKE------------PLEEYGVVISNPPYGE  311 (381)
T ss_pred             cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCC------------CCCcCCEEEeCCCcch
Confidence              37899999999999999998765   79999999999852            2267899999999963

>PLN03075 nicotianamine synthase; Provisional

Probab=98.86  E-value=1.8e-08  Score=89.88  Aligned_cols=101  Identities=15%  Similarity=0.178  Sum_probs=68.8

Q ss_pred             HHHHHhcCCCCCEEEEEcCCccHHHH-HHHH-c--CCEEEEEeCCHHHHHHHHHHhcC-C---CCeEEEEcCcccccccc
Q 023482          132 QLAAAAAVQEGDIVLEIGPGTGSLTN-VLLN-A--GATVLAIEKDQHMVGLVRERFAS-I---DQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~-~la~-~--~~~v~gvD~s~~~l~~a~~~~~~-~---~~v~~~~gD~~~~~~~d  203 (281)
                      .++..+...++++|+|||||.|.++. .++. .  +.+++|+|+|+++++.|++.+.. .   ++++|..+|+.+.+   
T Consensus       114 ~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~---  190 (296)
T PLN03075        114 DLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT---  190 (296)
T ss_pred             HHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc---
Confidence            34444444477899999999775443 3332 2  56899999999999999999853 2   37999999998853   


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCcc----cH---HHHHHhccCCCCc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNI----ST---DVIKQLLPMGDIF  244 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~----~~---~~~~~ll~~~~~~  244 (281)
                               ...+.||+|+...-.++    ..   .-+.+.+++|+.+
T Consensus       191 ---------~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~L  229 (296)
T PLN03075        191 ---------ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALL  229 (296)
T ss_pred             ---------cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEE
Confidence                     12367999999832222    11   2234556677655

>PTZ00146 fibrillarin; Provisional

Probab=98.86  E-value=2e-08  Score=89.21  Aligned_cols=101  Identities=14%  Similarity=0.100  Sum_probs=71.3

Q ss_pred             hcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482          137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      +.+.++.+|||+|||+|.++..++..   ...|++||+++.+.+..........||.++.+|+..-. .   +.     .
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~---y~-----~  198 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-K---YR-----M  198 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-h---hh-----c
Confidence            45678899999999999999999997   25899999999876555544433358999999986421 0   00     1


Q ss_pred             CCCCccEEEEcCCCcccH----HHHHHhccCCCCcce
Q 023482          214 SSSGFAKVVANIPFNIST----DVIKQLLPMGDIFSE  246 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~~~~----~~~~~ll~~~~~~~~  246 (281)
                      ....+|+|+++.......    ....++|++++.+..
T Consensus       199 ~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI  235 (293)
T PTZ00146        199 LVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFII  235 (293)
T ss_pred             ccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEE
Confidence            124689999987542222    223578899887643

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.85  E-value=1.2e-08  Score=89.21  Aligned_cols=116  Identities=13%  Similarity=0.126  Sum_probs=83.5

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~  197 (281)
                      ...+.....+...+.....++|||||+++|+++++|+..   +++|+++|.+++..+.|++++...+   +|+++.||+.
T Consensus        62 ~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~  141 (247)
T PLN02589         62 TTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL  141 (247)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence            344666666666666667889999999999999999975   5699999999999999999998664   8999999987


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCC---CcccHHHHHHhccCCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIP---FNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P---~~~~~~~~~~ll~~~~~~  244 (281)
                      +.-..     +.......+.||.||.+--   |...-+.+.+++.+|+.+
T Consensus       142 e~L~~-----l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGvi  186 (247)
T PLN02589        142 PVLDQ-----MIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVI  186 (247)
T ss_pred             HHHHH-----HHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEE
Confidence            74110     0000001258999998643   222224445777887765

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.84  E-value=1.8e-08  Score=95.11  Aligned_cols=96  Identities=17%  Similarity=0.210  Sum_probs=74.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-C--eEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-Q--LKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~--v~~~~gD~~  197 (281)
                      +..+......+...+.+.++.+|||+|||+|..+..+++.  .++|+|+|+++.+++.+++++++.+ .  +++..+|..
T Consensus       220 ~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~  299 (426)
T TIGR00563       220 VTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGR  299 (426)
T ss_pred             EEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence            4444556667777888889999999999999999999986  3699999999999999999998665 3  344677766


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      ..+..          .....||.|+.++|..
T Consensus       300 ~~~~~----------~~~~~fD~VllDaPcS  320 (426)
T TIGR00563       300 GPSQW----------AENEQFDRILLDAPCS  320 (426)
T ss_pred             ccccc----------ccccccCEEEEcCCCC
Confidence            54321          1236799999998865

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=1.9e-08  Score=82.37  Aligned_cols=78  Identities=22%  Similarity=0.321  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ....++|||||+|..+..|++.   .....++|+|+.+++..++....++ ++.+++.|....             ...+
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-------------l~~~  109 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-------------LRNE  109 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-------------hccC
Confidence            4678999999999999999986   3589999999999999888877665 788999998764             3348


Q ss_pred             CccEEEEcCCCcccH
Q 023482          217 GFAKVVANIPFNIST  231 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~~  231 (281)
                      +.|+++-||||...+
T Consensus       110 ~VDvLvfNPPYVpt~  124 (209)
T KOG3191|consen  110 SVDVLVFNPPYVPTS  124 (209)
T ss_pred             CccEEEECCCcCcCC
Confidence            899999999996443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.83  E-value=2.5e-08  Score=99.60  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=77.9

Q ss_pred             ccCCHHHHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHc---------------------------------------
Q 023482          123 YMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA---------------------------------------  162 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~---------------------------------------  162 (281)
                      -.+.+.++..|+...+. .++..++|.+||+|.+.+..+..                                       
T Consensus       171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~  250 (702)
T PRK11783        171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA  250 (702)
T ss_pred             CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence            34567788888887776 56789999999999999887652                                       


Q ss_pred             -----CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          163 -----GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       163 -----~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                           ..+++|+|+++.+++.|+.|+..++   .+++.++|+.+++..+          ..+.+|+|++||||..
T Consensus       251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----------~~~~~d~IvtNPPYg~  315 (702)
T PRK11783        251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----------PKGPTGLVISNPPYGE  315 (702)
T ss_pred             cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----------ccCCCCEEEECCCCcC
Confidence                 1269999999999999999998764   5899999999876431          1256999999999954

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.82  E-value=2.4e-08  Score=85.82  Aligned_cols=111  Identities=18%  Similarity=0.217  Sum_probs=77.1

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC--------------CCCeEE
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--------------IDQLKV  191 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~--------------~~~v~~  191 (281)
                      ++.+.+.+-. +...++.+||..|||.|.-...|+++|.+|+|+|+++.+++.+.+....              .++|++
T Consensus        23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~  101 (218)
T PF05724_consen   23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI  101 (218)
T ss_dssp             THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred             CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence            4444444444 6666778999999999999999999999999999999999998443221              137899


Q ss_pred             EEcCccccccccchhhHHHhhcCCCCccEEEEc-----CCCcccH---HHHHHhccCCCCcceEE
Q 023482          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-----IPFNIST---DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       192 ~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n-----~P~~~~~---~~~~~ll~~~~~~~~~~  248 (281)
                      .+||+.+++..+           .+.||+|+--     +|-....   ..+.+++++++.+-.+.
T Consensus       102 ~~gDfF~l~~~~-----------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~  155 (218)
T PF05724_consen  102 YCGDFFELPPED-----------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT  155 (218)
T ss_dssp             EES-TTTGGGSC-----------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             EEcccccCChhh-----------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            999999987432           2578888864     3323222   34457888887743333

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.82  E-value=3.2e-08  Score=87.71  Aligned_cols=113  Identities=19%  Similarity=0.229  Sum_probs=75.8

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHH--HhcCCC-CeEEEEcCccccccccch
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRE--RFASID-QLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~--~~~~~~-~v~~~~gD~~~~~~~d~~  205 (281)
                      -+++...+..-.|++|||||||.|+++..|+..|+ .|+|+|.+...+.+.+.  ++-... .+.++...++++|.    
T Consensus       104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~----  179 (315)
T PF08003_consen  104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN----  179 (315)
T ss_pred             HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----
Confidence            34566666666899999999999999999999977 79999999988876432  333222 33444345566652    


Q ss_pred             hhHHHhhcCCCCccEEEE-cCCCcccHHHH-----HHhccCCCCcceEEEeehhhH
Q 023482          206 LSLFERRKSSSGFAKVVA-NIPFNISTDVI-----KQLLPMGDIFSEVVLLLQEET  255 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~-n~P~~~~~~~~-----~~ll~~~~~~~~~~~~~~~~~  255 (281)
                               .+.||.||+ ..-||...|+-     +..+.+||.+-.-++++.-+.
T Consensus       180 ---------~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~  226 (315)
T PF08003_consen  180 ---------LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDE  226 (315)
T ss_pred             ---------cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCC
Confidence                     478999998 46777665543     455566666544444444333

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR03438 probable methyltransferase

Probab=98.81  E-value=3.9e-08  Score=88.70  Aligned_cols=67  Identities=25%  Similarity=0.377  Sum_probs=53.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC-C--CeEEEEcCccc
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-D--QLKVLQEDFVK  198 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~-~--~v~~~~gD~~~  198 (281)
                      ...+.+.+.  ++.+|||+|||+|..+..+++.   +.+|+++|+|++|++.|++++... +  ++.++++|+.+
T Consensus        54 ~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~  126 (301)
T TIGR03438        54 ADEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ  126 (301)
T ss_pred             HHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence            333444443  5678999999999999999887   479999999999999999887542 2  56778999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.80  E-value=2.1e-08  Score=88.84  Aligned_cols=93  Identities=13%  Similarity=0.189  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCCccH----HHHHHHHc-------CCEEEEEeCCHHHHHHHHHHhcC-----------------------
Q 023482          140 QEGDIVLEIGPGTGS----LTNVLLNA-------GATVLAIEKDQHMVGLVRERFAS-----------------------  185 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~----~t~~la~~-------~~~v~gvD~s~~~l~~a~~~~~~-----------------------  185 (281)
                      .++.+|+|+|||+|.    +++.+++.       +.+|+|+|+|+.|++.|++..-.                       
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345699999999996    45555553       35899999999999999975310                       


Q ss_pred             ------CCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCC-cccH-------HHHHHhccCCCCc
Q 023482          186 ------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF-NIST-------DVIKQLLPMGDIF  244 (281)
Q Consensus       186 ------~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~-~~~~-------~~~~~ll~~~~~~  244 (281)
                            ..+|+|.++|+.+.+++            .+.||+|++..-+ +...       ..+.+.+++||.+
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~------------~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L  238 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPP------------LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYL  238 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCc------------cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEE
Confidence                  02689999999887642            3679999994332 2221       2224667788765

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.80  E-value=8.8e-08  Score=86.54  Aligned_cols=105  Identities=15%  Similarity=0.207  Sum_probs=77.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d  203 (281)
                      ....+++.+...++.+|||||||+|.++..+++.  +.+++++|. +.+++.++++....   ++++++.+|+.+.+++ 
T Consensus       137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-  214 (306)
T TIGR02716       137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-  214 (306)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-
Confidence            4566777777778889999999999999999987  469999998 78999999887754   3799999999875432 


Q ss_pred             chhhHHHhhcCCCCccEEE-EcCCCcccHH----HH---HHhccCCCCcceEE
Q 023482          204 HMLSLFERRKSSSGFAKVV-ANIPFNISTD----VI---KQLLPMGDIFSEVV  248 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi-~n~P~~~~~~----~~---~~ll~~~~~~~~~~  248 (281)
                                   .+|+|+ ++..+.+..+    ++   .+.+++||.+-..-
T Consensus       215 -------------~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       215 -------------EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             -------------CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                         247665 4544444433    23   35667777764443

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.77  E-value=4.5e-08  Score=90.94  Aligned_cols=106  Identities=15%  Similarity=0.096  Sum_probs=79.3

Q ss_pred             ccCccccCCHHHHHHHHHHhcCC-CCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCCC--CeEEE
Q 023482          118 SLGQHYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID--QLKVL  192 (281)
Q Consensus       118 ~~g~~~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~  192 (281)
                      .|+-+....+++...+++.+... .+.+|||++||+|..++.++.. + .+|+++|+++.+++.+++|++.++  ++++.
T Consensus        33 Fyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~  112 (382)
T PRK04338         33 FYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVF  112 (382)
T ss_pred             eeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEE
Confidence            44444555566666666666533 3468999999999999999876 3 399999999999999999987553  67899


Q ss_pred             EcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHH
Q 023482          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ  236 (281)
Q Consensus       193 ~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~  236 (281)
                      ++|+.++..           . ...||+|+.||| ....+++..
T Consensus       113 ~~Da~~~l~-----------~-~~~fD~V~lDP~-Gs~~~~l~~  143 (382)
T PRK04338        113 NKDANALLH-----------E-ERKFDVVDIDPF-GSPAPFLDS  143 (382)
T ss_pred             hhhHHHHHh-----------h-cCCCCEEEECCC-CCcHHHHHH
Confidence            999876421           1 256999999986 655666554

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.77  E-value=3.2e-08  Score=88.50  Aligned_cols=91  Identities=13%  Similarity=0.294  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d  203 (281)
                      |-+.+.+++.+.+.++..++|.+||.|..+..+++..   ++|+|+|.|+.+++.|++++...++++++++|+.++... 
T Consensus         5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~-   83 (296)
T PRK00050          5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV-   83 (296)
T ss_pred             cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH-
Confidence            4467788888888888999999999999999999872   699999999999999998876545899999999886421 


Q ss_pred             chhhHHHhhcC-CCCccEEEEcCC
Q 023482          204 HMLSLFERRKS-SSGFAKVVANIP  226 (281)
Q Consensus       204 ~~~d~v~~~~~-~~~~d~Vi~n~P  226 (281)
                           +   .. ...+|.|+.++=
T Consensus        84 -----l---~~~~~~vDgIl~DLG   99 (296)
T PRK00050         84 -----L---AEGLGKVDGILLDLG   99 (296)
T ss_pred             -----H---HcCCCccCEEEECCC
Confidence                 1   11 126888887653

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.76  E-value=7.2e-08  Score=70.79  Aligned_cols=75  Identities=27%  Similarity=0.448  Sum_probs=60.6

Q ss_pred             EEEEEcCCccHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          144 IVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~-~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      +|+|+|||.|..+..++. ...+++++|+++..+..+++.....  .+++++.+|+.+...           ...+.+|+
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~   69 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-----------EADESFDV   69 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-----------ccCCceEE
Confidence            489999999999999988 4679999999999999988443322  388999999987652           12367999


Q ss_pred             EEEcCCCcc
Q 023482          221 VVANIPFNI  229 (281)
Q Consensus       221 Vi~n~P~~~  229 (281)
                      |+.+.+++.
T Consensus        70 i~~~~~~~~   78 (107)
T cd02440          70 IISDPPLHH   78 (107)
T ss_pred             EEEccceee
Confidence            999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.76  E-value=5.2e-08  Score=81.80  Aligned_cols=75  Identities=19%  Similarity=0.403  Sum_probs=53.4

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+.++++|||+|||+|.++..++..   ..+|+++|+++.+         ...+++++++|+.+.+..+    .+.....
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~----~l~~~~~   95 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLN----KIRERVG   95 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHH----HHHHHhC
Confidence            4457889999999999999988876   3479999999865         1247889999987643211    1100023


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+.||+|+++.
T Consensus        96 ~~~~D~V~~~~  106 (188)
T TIGR00438        96 DDKVDVVMSDA  106 (188)
T ss_pred             CCCccEEEcCC
Confidence            45799999974

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.75  E-value=3e-08  Score=89.98  Aligned_cols=112  Identities=19%  Similarity=0.269  Sum_probs=83.6

Q ss_pred             ccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (281)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~  196 (281)
                      ..|+.+....++..-.-...+|.+|+|..+|.|++++.+|..+. +|+++|+||.+++.+++|+..++   .+..++||+
T Consensus       168 Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~  247 (341)
T COG2520         168 KVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA  247 (341)
T ss_pred             HeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccH
Confidence            44555555544433222334689999999999999999999976 59999999999999999998764   589999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCc--ccHHHHHHhccCCCCc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGDIF  244 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~--~~~~~~~~ll~~~~~~  244 (281)
                      .++...            .+.+|.|+.|+|..  ...+....+++.++.+
T Consensus       248 rev~~~------------~~~aDrIim~~p~~a~~fl~~A~~~~k~~g~i  285 (341)
T COG2520         248 REVAPE------------LGVADRIIMGLPKSAHEFLPLALELLKDGGII  285 (341)
T ss_pred             HHhhhc------------cccCCEEEeCCCCcchhhHHHHHHHhhcCcEE
Confidence            998632            26799999999873  2334444555555543

>PLN02366 spermidine synthase

Probab=98.75  E-value=9.6e-08  Score=86.23  Aligned_cols=95  Identities=13%  Similarity=0.187  Sum_probs=71.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ..+++||+||||.|.++..+++.  ..+|+.||+|+.+++.|++.+..      .++++++.+|+.+.--.         
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~---------  160 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN---------  160 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh---------
Confidence            45789999999999999999987  35899999999999999998753      24899999998764210         


Q ss_pred             hcCCCCccEEEEcCCCc--cc--------HHHHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIPFN--IS--------TDVIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~--~~--------~~~~~~ll~~~~~~  244 (281)
                       ...+.||+||.+.+-.  ..        -..+++.|+++|.+
T Consensus       161 -~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvl  202 (308)
T PLN02366        161 -APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVV  202 (308)
T ss_pred             -ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEE
Confidence             1235799999975331  11        12345777888876

>PRK01581 speE spermidine synthase; Validated

Probab=98.73  E-value=5.9e-08  Score=88.64  Aligned_cols=95  Identities=20%  Similarity=0.202  Sum_probs=71.0

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHh--c-------CCCCeEEEEcCccccccccchhh
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERF--A-------SIDQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~--~-------~~~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ...+++||+||||+|..+..+++..  .+|++||+|+++++.|+...  .       ..++++++.+|+.++-.      
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~------  221 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS------  221 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH------
Confidence            3456799999999999999888863  59999999999999999621  1       12499999999987421      


Q ss_pred             HHHhhcCCCCccEEEEcCCCccc-----------HHHHHHhccCCCCc
Q 023482          208 LFERRKSSSGFAKVVANIPFNIS-----------TDVIKQLLPMGDIF  244 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~-----------~~~~~~ll~~~~~~  244 (281)
                           ...+.||+||.++|-...           -..+.+.|+++|.+
T Consensus       222 -----~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~  264 (374)
T PRK01581        222 -----SPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAF  264 (374)
T ss_pred             -----hcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEE
Confidence                 234679999999754211           13445778888875

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=5.2e-08  Score=91.27  Aligned_cols=119  Identities=13%  Similarity=0.089  Sum_probs=87.7

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEE
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKV  191 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~  191 (281)
                      .+.+.|..|-..-.-+...+-+++++..++.++|+.||||.+++.+++...+|+|||+++.+++.|+.+...++  |.+|
T Consensus       356 Sp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~F  435 (534)
T KOG2187|consen  356 SPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATF  435 (534)
T ss_pred             CCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceee
Confidence            34444544444445566777788888889999999999999999999998899999999999999999988776  9999


Q ss_pred             EEcCccccccccchhhHHHhhcCCCCcc-EEEEcCCCcccH-HHHHHhcc
Q 023482          192 LQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNIST-DVIKQLLP  239 (281)
Q Consensus       192 ~~gD~~~~~~~d~~~d~v~~~~~~~~~d-~Vi~n~P~~~~~-~~~~~ll~  239 (281)
                      ++|-++++--..     +.  ...+.-+ ++|.+||..... .+++.++.
T Consensus       436 i~gqaE~~~~sl-----~~--~~~~~~~~v~iiDPpR~Glh~~~ik~l~~  478 (534)
T KOG2187|consen  436 IVGQAEDLFPSL-----LT--PCCDSETLVAIIDPPRKGLHMKVIKALRA  478 (534)
T ss_pred             eecchhhccchh-----cc--cCCCCCceEEEECCCcccccHHHHHHHHh
Confidence            999777753211     00  1112333 788899985444 45555554

>PRK03612 spermidine synthase; Provisional

Probab=98.71  E-value=6e-08  Score=93.80  Aligned_cols=95  Identities=19%  Similarity=0.277  Sum_probs=72.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH--hc-------CCCCeEEEEcCccccccccchhhH
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER--FA-------SIDQLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~--~~-------~~~~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      .++++|||||||+|..+..+++..  .+|++||+|+++++.++++  +.       ..++++++.+|+.+.-.       
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~-------  368 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR-------  368 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH-------
Confidence            456799999999999999998873  5999999999999999984  22       12489999999987421       


Q ss_pred             HHhhcCCCCccEEEEcCCCcccH-----------HHHHHhccCCCCcc
Q 023482          209 FERRKSSSGFAKVVANIPFNIST-----------DVIKQLLPMGDIFS  245 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~~~~~-----------~~~~~ll~~~~~~~  245 (281)
                          ...++||+|++|+|.....           ..+++.++++|.+.
T Consensus       369 ----~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv  412 (521)
T PRK03612        369 ----KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLV  412 (521)
T ss_pred             ----hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEE
Confidence                2236899999998754321           24457778887663

>TIGR00417 speE spermidine synthase

Probab=98.70  E-value=9.9e-08  Score=84.79  Aligned_cols=95  Identities=18%  Similarity=0.294  Sum_probs=70.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ..+++|||||||+|.++..+++..  .+++++|+++++++.+++.+..      .++++++.+|+.+.--          
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~----------  140 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA----------  140 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH----------
Confidence            345699999999999999888773  5899999999999999987643      1378888888765311          


Q ss_pred             hcCCCCccEEEEcCCCcccH----------HHHHHhccCCCCcc
Q 023482          212 RKSSSGFAKVVANIPFNIST----------DVIKQLLPMGDIFS  245 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~----------~~~~~ll~~~~~~~  245 (281)
                       ...+.||+||.+++.....          ..+.++++++|.+.
T Consensus       141 -~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv  183 (270)
T TIGR00417       141 -DTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFV  183 (270)
T ss_pred             -hCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEE
Confidence             1236899999987632211          24457778887663

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.68  E-value=1.9e-07  Score=80.66  Aligned_cols=110  Identities=15%  Similarity=0.210  Sum_probs=66.7

Q ss_pred             HHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeE-EEEcCccccccccchh
Q 023482          130 NDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLK-VLQEDFVKCHIRSHML  206 (281)
Q Consensus       130 ~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~-~~~gD~~~~~~~d~~~  206 (281)
                      ...+++...+ .++.+|||+|||||.++..+++.|+ +|+|+|+++.++....   ..+.++. +...|+..+..++...
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l---~~~~~v~~~~~~ni~~~~~~~~~~  139 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKL---RQDERVKVLERTNIRYVTPADIFP  139 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH---hcCCCeeEeecCCcccCCHhHcCC
Confidence            4445555544 3677999999999999999999965 8999999998887622   2222332 3344555443332211


Q ss_pred             hHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhH
Q 023482          207 SLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEET  255 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  255 (281)
                      |       ...+|++|...-+  .-+-+..++++ +   .++.+++.++
T Consensus       140 d-------~~~~DvsfiS~~~--~l~~i~~~l~~-~---~~~~L~KPqF  175 (228)
T TIGR00478       140 D-------FATFDVSFISLIS--ILPELDLLLNP-N---DLTLLFKPQF  175 (228)
T ss_pred             C-------ceeeeEEEeehHh--HHHHHHHHhCc-C---eEEEEcChHh
Confidence            1       2467877776543  23445566655 2   3444444444

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.64  E-value=3.4e-08  Score=83.90  Aligned_cols=116  Identities=22%  Similarity=0.235  Sum_probs=84.9

Q ss_pred             HHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcCccccccccchhhHH
Q 023482          135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~----~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      +...+..+.+|||.+.|-||.++..+++|+ +|+.||.|+..++.|+.|-=..    .+++++.||+.++--.       
T Consensus       128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-------  200 (287)
T COG2521         128 ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD-------  200 (287)
T ss_pred             heeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-------
Confidence            344566799999999999999999999998 9999999999999998663111    2789999999875211       


Q ss_pred             HhhcCCCCccEEEEcCCCcccH---------HHHHHhccCCCCcce---------EEEeehhhHHHHhc
Q 023482          210 ERRKSSSGFAKVVANIPFNIST---------DVIKQLLPMGDIFSE---------VVLLLQEETALRLV  260 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~~---------~~~~~ll~~~~~~~~---------~~~~~~~~~a~rl~  260 (281)
                         ..+.+||+||.+||.....         ..+.++|++||.+-.         --.-++++++.||.
T Consensus       201 ---~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr  266 (287)
T COG2521         201 ---FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLR  266 (287)
T ss_pred             ---CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHH
Confidence               3346799999999964322         334588888876521         12235566666665

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.64  E-value=8.3e-08  Score=80.19  Aligned_cols=91  Identities=19%  Similarity=0.204  Sum_probs=67.9

Q ss_pred             CEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC--CCeE-EEEcCccccccccchhhHHHhhcCCCCc
Q 023482          143 DIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLK-VLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~--~~v~-~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      ..|||+|||||..-...--. +..|+++|.++.|-+.|.+.+.+.  .++. |++++.++++.           ...+++
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~-----------l~d~s~  146 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ-----------LADGSY  146 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc-----------cccCCe
Confidence            36899999999876655433 779999999999999998887655  3777 99999999983           234778


Q ss_pred             cEEEEcCCCc---c---cHHHHHHhccCCCCc
Q 023482          219 AKVVANIPFN---I---STDVIKQLLPMGDIF  244 (281)
Q Consensus       219 d~Vi~n~P~~---~---~~~~~~~ll~~~~~~  244 (281)
                      |.||..+-.=   .   .-..+.++++++|.+
T Consensus       147 DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~i  178 (252)
T KOG4300|consen  147 DTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRI  178 (252)
T ss_pred             eeEEEEEEEeccCCHHHHHHHHHHhcCCCcEE
Confidence            8888754331   1   113346888888864

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.64  E-value=9.8e-08  Score=80.73  Aligned_cols=99  Identities=16%  Similarity=0.196  Sum_probs=69.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ...+||||||.|.++..+|..  +..++|+|++...+..+..+....  .|+.++++|+..+-.      .   ...+++
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~------~---~~~~~~   88 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLR------R---LFPPGS   88 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHH------H---HSTTTS
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHh------h---cccCCc
Confidence            348999999999999999987  679999999999999998777643  599999999987311      1   134578


Q ss_pred             ccEEEEcCCCcc-----------cH---HHHHHhccCCCCcceEEE
Q 023482          218 FAKVVANIPFNI-----------ST---DVIKQLLPMGDIFSEVVL  249 (281)
Q Consensus       218 ~d~Vi~n~P~~~-----------~~---~~~~~ll~~~~~~~~~~~  249 (281)
                      .+.|+.|.|=-|           ..   ..+.++|++||.+...+-
T Consensus        89 v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD  134 (195)
T PF02390_consen   89 VDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD  134 (195)
T ss_dssp             EEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             hheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence            999999864211           22   344577888887644443

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.62  E-value=1.4e-07  Score=84.89  Aligned_cols=74  Identities=22%  Similarity=0.315  Sum_probs=62.1

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhc
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .+..++.|||+|||||.+++..|+.|+ +|+|||.+.-+ +.|++.+..++   .|+++.|.++++.++           
T Consensus        57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP-----------  124 (346)
T KOG1499|consen   57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP-----------  124 (346)
T ss_pred             hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC-----------
Confidence            345789999999999999999999976 99999998755 88888887664   589999999998542           


Q ss_pred             CCCCccEEEEc
Q 023482          214 SSSGFAKVVAN  224 (281)
Q Consensus       214 ~~~~~d~Vi~n  224 (281)
                       ..+.|+||+-
T Consensus       125 -~eKVDiIvSE  134 (346)
T KOG1499|consen  125 -VEKVDIIVSE  134 (346)
T ss_pred             -ccceeEEeeh
Confidence             3778999984

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.62  E-value=9.7e-08  Score=88.38  Aligned_cols=112  Identities=20%  Similarity=0.263  Sum_probs=83.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~  197 (281)
                      |+.++......+....  .|++||++.|=||.++...|..|+ +||+||+|...++.|++|++-++    ++.++++|+.
T Consensus       201 fFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf  278 (393)
T COG1092         201 FFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF  278 (393)
T ss_pred             eeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence            4445555444444433  389999999999999999999988 99999999999999999998664    6899999997


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcc-cH--------------HHHHHhccCCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-ST--------------DVIKQLLPMGDIF  244 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-~~--------------~~~~~ll~~~~~~  244 (281)
                      ++--..        -..+..||+||.+||=.. ..              ....+++.++|.+
T Consensus       279 ~~l~~~--------~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l  332 (393)
T COG1092         279 KWLRKA--------ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTL  332 (393)
T ss_pred             HHHHHH--------HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEE
Confidence            752110        034568999999998421 11              2224777888766

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=5.1e-07  Score=75.67  Aligned_cols=112  Identities=18%  Similarity=0.298  Sum_probs=86.2

Q ss_pred             ccccCCHHHHHHHHHHhc--CCCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCC--------
Q 023482          121 QHYMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI--------  186 (281)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~--------  186 (281)
                      ...+.-+.+...+++.|.  +.+|-+.||+|+|+|+++..++..    |..++|||..++.++.+++++...        
T Consensus        60 n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~  139 (237)
T KOG1661|consen   60 NLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSS  139 (237)
T ss_pred             ceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhh
Confidence            335666888888888887  889999999999999999988864    445699999999999999987642        


Q ss_pred             ----CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCC-cccHHHHHHhccCCCCc
Q 023482          187 ----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF-NISTDVIKQLLPMGDIF  244 (281)
Q Consensus       187 ----~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~-~~~~~~~~~ll~~~~~~  244 (281)
                          +++.++.||....-.            +..+||.|....-- ....+.+..|++.|+.+
T Consensus       140 ~~~~~~l~ivvGDgr~g~~------------e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrll  190 (237)
T KOG1661|consen  140 KLKRGELSIVVGDGRKGYA------------EQAPYDAIHVGAAASELPQELLDQLKPGGRLL  190 (237)
T ss_pred             hhccCceEEEeCCccccCC------------ccCCcceEEEccCccccHHHHHHhhccCCeEE
Confidence                378999999988753            34678888876433 44556667776665543

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.62  E-value=2.9e-07  Score=79.44  Aligned_cols=100  Identities=21%  Similarity=0.236  Sum_probs=77.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ...+||||||.|.++..+|+.  ...++|||+....+..|.+.+.+.+  |+.++++|+.++-.      .+   ..+++
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~------~~---~~~~s  119 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLD------YL---IPDGS  119 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH------hc---CCCCC
Confidence            368999999999999999998  4689999999999999988887653  99999999988531      11   34458


Q ss_pred             ccEEEEcCCCcccH--------------HHHHHhccCCCCcceEEEe
Q 023482          218 FAKVVANIPFNIST--------------DVIKQLLPMGDIFSEVVLL  250 (281)
Q Consensus       218 ~d~Vi~n~P~~~~~--------------~~~~~ll~~~~~~~~~~~~  250 (281)
                      .|.|+.|.|=-|..              ..+.+.|+++|.+...+-.
T Consensus       120 l~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~  166 (227)
T COG0220         120 LDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN  166 (227)
T ss_pred             eeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence            99999986532221              4445888888888666554

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.60  E-value=1.7e-07  Score=83.49  Aligned_cols=84  Identities=23%  Similarity=0.340  Sum_probs=68.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~  204 (281)
                      ..+.+++.-.-..++.|||+|||+|.++...++.|+ +|++||.+ +|.+.|++.++.+   ++|.++.|.++++.++  
T Consensus       165 Y~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP--  241 (517)
T KOG1500|consen  165 YQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP--  241 (517)
T ss_pred             HHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc--
Confidence            344455554555788999999999999999999976 99999987 5889999888765   3899999999998654  


Q ss_pred             hhhHHHhhcCCCCccEEEEcCC
Q 023482          205 MLSLFERRKSSSGFAKVVANIP  226 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P  226 (281)
                                 .+.|+||+.|.
T Consensus       242 -----------Ek~DviISEPM  252 (517)
T KOG1500|consen  242 -----------EKVDVIISEPM  252 (517)
T ss_pred             -----------hhccEEEeccc
Confidence                       67899999763

>PRK10742 putative methyltransferase; Provisional

Probab=98.58  E-value=2.9e-07  Score=79.85  Aligned_cols=88  Identities=17%  Similarity=0.229  Sum_probs=72.0

Q ss_pred             HHHHHHhcCCCCC--EEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-----------CCeEEEEcCcc
Q 023482          131 DQLAAAAAVQEGD--IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------DQLKVLQEDFV  197 (281)
Q Consensus       131 ~~l~~~l~~~~~~--~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-----------~~v~~~~gD~~  197 (281)
                      +.+++.++++++.  +|||+-+|+|..+..++..|++|+++|.++......+.++...           .+++++++|..
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~  155 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence            4567777777777  9999999999999999999999999999999999888777652           36888899987


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      ++--           .....||+|+.+|||..
T Consensus       156 ~~L~-----------~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        156 TALT-----------DITPRPQVVYLDPMFPH  176 (250)
T ss_pred             HHHh-----------hCCCCCcEEEECCCCCC
Confidence            6521           12347999999999954

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.53  E-value=5e-07  Score=80.50  Aligned_cols=93  Identities=20%  Similarity=0.288  Sum_probs=65.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~  197 (281)
                      |.-+++...++.+..   .+++|||+.|=||.++...+..|+ +|+.||.|+.+++.+++|+.-++    +++++.+|+.
T Consensus       108 FlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf  184 (286)
T PF10672_consen  108 FLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF  184 (286)
T ss_dssp             -GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred             cHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence            444444444444432   578999999999999999888876 89999999999999999987553    7899999987


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCC
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~  227 (281)
                      +.-         ..+...+.||+||.+||=
T Consensus       185 ~~l---------~~~~~~~~fD~IIlDPPs  205 (286)
T PF10672_consen  185 KFL---------KRLKKGGRFDLIILDPPS  205 (286)
T ss_dssp             HHH---------HHHHHTT-EEEEEE--SS
T ss_pred             HHH---------HHHhcCCCCCEEEECCCC
Confidence            631         111345689999999984

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.47  E-value=6.7e-07  Score=86.20  Aligned_cols=100  Identities=12%  Similarity=0.046  Sum_probs=74.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+..+||||||.|.++..+|..  ...++|+|++...+..+.......  .|+.++++|+..+..      .    ....
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~------~----~~~~  416 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILN------D----LPNN  416 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH------h----cCcc
Confidence            5678999999999999999997  569999999999998887776544  499999988754321      1    2346


Q ss_pred             CccEEEEcCCCcccH--------------HHHHHhccCCCCcceEEEe
Q 023482          217 GFAKVVANIPFNIST--------------DVIKQLLPMGDIFSEVVLL  250 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~~--------------~~~~~ll~~~~~~~~~~~~  250 (281)
                      ++|.|+.|.|=-|..              ..+.+++++||.+...+-.
T Consensus       417 sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~  464 (506)
T PRK01544        417 SLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI  464 (506)
T ss_pred             cccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence            789999986533321              3456888888887655543

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=2.8e-06  Score=73.95  Aligned_cols=90  Identities=20%  Similarity=0.264  Sum_probs=77.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccccc
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d  203 (281)
                      ++.++..+.+.+|.+|+|-|+|+|.++.++++..   ++++.+|+.+...+.|++.+++.+   |+++.+-|+....|..
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            5678888999999999999999999999999873   599999999999999999998763   9999999998876542


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                                ....+|+|+.++|--|
T Consensus       174 ----------ks~~aDaVFLDlPaPw  189 (314)
T KOG2915|consen  174 ----------KSLKADAVFLDLPAPW  189 (314)
T ss_pred             ----------cccccceEEEcCCChh
Confidence                      2467899999987544

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.39  E-value=3.8e-06  Score=69.66  Aligned_cols=96  Identities=21%  Similarity=0.284  Sum_probs=59.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEcCccccccccchhhHHHh
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-----~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ...+.+|||+|||+|..++.++..  ..+|+..|.++ .++.++.|++.+     +++++...|..+-.    ..+.   
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~----~~~~---  114 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDEL----DSDL---  114 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-H----HHHH---
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcc----cccc---
Confidence            447789999999999999999998  56999999999 999999998764     26777777665411    0111   


Q ss_pred             hcCCCCccEEEE-cCCCccc--H---HHHHHhccCCCC
Q 023482          212 RKSSSGFAKVVA-NIPFNIS--T---DVIKQLLPMGDI  243 (281)
Q Consensus       212 ~~~~~~~d~Vi~-n~P~~~~--~---~~~~~ll~~~~~  243 (281)
                       .....||+|++ +.-|...  .   ..+.+++.+++.
T Consensus       115 -~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~  151 (173)
T PF10294_consen  115 -LEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK  151 (173)
T ss_dssp             -HS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred             -cccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence             23467999997 4555322  2   344577777766

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.39  E-value=2.3e-06  Score=81.14  Aligned_cols=90  Identities=24%  Similarity=0.429  Sum_probs=60.9

Q ss_pred             CCEEEEEcCCccHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhh
Q 023482          142 GDIVLEIGPGTGSLTNVLLNAG------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~------~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      +..|+|||||+|.+....++.+      .+|+|||.++.++..+++.+..+   ++|+++++|+.++..+          
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----------  256 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----------  256 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----------
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----------
Confidence            5689999999999987776653      49999999999887776653322   4999999999998643          


Q ss_pred             cCCCCccEEEEcC----CCcccHH-HH---HHhccCCCCc
Q 023482          213 KSSSGFAKVVANI----PFNISTD-VI---KQLLPMGDIF  244 (281)
Q Consensus       213 ~~~~~~d~Vi~n~----P~~~~~~-~~---~~ll~~~~~~  244 (281)
                         .+.|+|||-+    -.+...+ .+   .++++++|.+
T Consensus       257 ---ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~  293 (448)
T PF05185_consen  257 ---EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIM  293 (448)
T ss_dssp             ---S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEE
T ss_pred             ---CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEE
Confidence               5899999843    2343333 33   2555555543

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.38  E-value=2.7e-07  Score=78.31  Aligned_cols=110  Identities=17%  Similarity=0.210  Sum_probs=75.9

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccccccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d  203 (281)
                      +.-|..+..++..+...+-.++||+|||||..+..+.....+++|||+|.+|++.|.++--   -=++.++|+..+- ++
T Consensus       108 Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~---YD~L~~Aea~~Fl-~~  183 (287)
T COG4976         108 YSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL---YDTLYVAEAVLFL-ED  183 (287)
T ss_pred             CccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc---hHHHHHHHHHHHh-hh
Confidence            4456777888888877667899999999999999999988899999999999999986521   1124444444321 00


Q ss_pred             chhhHHHhhcCCCCccEEEEc--CCCcccH----HHHHHhccCCCCcce
Q 023482          204 HMLSLFERRKSSSGFAKVVAN--IPFNIST----DVIKQLLPMGDIFSE  246 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n--~P~~~~~----~~~~~ll~~~~~~~~  246 (281)
                               .....||+|++.  +||-..-    .....++.++|.|.-
T Consensus       184 ---------~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaF  223 (287)
T COG4976         184 ---------LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAF  223 (287)
T ss_pred             ---------ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEE
Confidence                     345678888874  5663222    223466777776643

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.36  E-value=5e-07  Score=76.21  Aligned_cols=103  Identities=15%  Similarity=0.212  Sum_probs=78.2

Q ss_pred             ccCCHHHHHHHHHHhcCC-CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccc
Q 023482          123 YMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~  198 (281)
                      ..++..+...+....... ....|+|..||.|.-++..+.++..|++||+||.-+..|+.|++-+|   +|+|++||+.+
T Consensus        75 svTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld  154 (263)
T KOG2730|consen   75 SVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD  154 (263)
T ss_pred             EeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence            445555665555544322 55689999999999999999999999999999999999999998764   99999999987


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcccHHH
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV  233 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~  233 (281)
                      +--. -.       ......|.|+..||+..+.-.
T Consensus       155 ~~~~-lq-------~~K~~~~~vf~sppwggp~y~  181 (263)
T KOG2730|consen  155 LASK-LK-------ADKIKYDCVFLSPPWGGPSYL  181 (263)
T ss_pred             HHHH-Hh-------hhhheeeeeecCCCCCCcchh
Confidence            5211 00       122347899999998766533

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.35  E-value=2.3e-06  Score=79.24  Aligned_cols=84  Identities=12%  Similarity=0.133  Sum_probs=68.0

Q ss_pred             CEEEEEcCCccHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          143 DIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+|||+.||+|..++.++..  + .+|+++|+++.+++.+++|++.++  +++++++|+..+-.           .....
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~-----------~~~~~  114 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR-----------YRNRK  114 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-----------HhCCC
Confidence            58999999999999999987  4 499999999999999999997654  68999999887531           12356


Q ss_pred             ccEEEEcCCCcccHHHHHHhc
Q 023482          218 FAKVVANIPFNISTDVIKQLL  238 (281)
Q Consensus       218 ~d~Vi~n~P~~~~~~~~~~ll  238 (281)
                      ||+|+.+| |....+++...+
T Consensus       115 fDvIdlDP-fGs~~~fld~al  134 (374)
T TIGR00308       115 FHVIDIDP-FGTPAPFVDSAI  134 (374)
T ss_pred             CCEEEeCC-CCCcHHHHHHHH
Confidence            99999998 666666665443

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PLN02823 spermine synthase

Probab=98.32  E-value=3.7e-06  Score=76.78  Aligned_cols=93  Identities=23%  Similarity=0.354  Sum_probs=70.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHhh
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      .+++||.||+|.|..+..+++.  ..+|+.||+|+++++.|++.+..      .++++++.+|+.+.--           
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~-----------  171 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE-----------  171 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh-----------
Confidence            4679999999999999988886  35899999999999999998853      2489999999987421           


Q ss_pred             cCCCCccEEEEcCCC--------cccH----H-HHHHhccCCCCc
Q 023482          213 KSSSGFAKVVANIPF--------NIST----D-VIKQLLPMGDIF  244 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~--------~~~~----~-~~~~ll~~~~~~  244 (281)
                      ...+.||+||.+.+-        +..+    . .+++.|.++|.+
T Consensus       172 ~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvl  216 (336)
T PLN02823        172 KRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIF  216 (336)
T ss_pred             hCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEE
Confidence            234679999997421        1111    2 456778888876

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=98.32  E-value=9.8e-07  Score=78.98  Aligned_cols=116  Identities=26%  Similarity=0.366  Sum_probs=93.3

Q ss_pred             HHHHhcCCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHH-------H
Q 023482          106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVG-------L  178 (281)
Q Consensus       106 ~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~-------~  178 (281)
                      +.++++....+...|. -..+.++.--+.+.....+|+.|+|.--|||.+....|.-|+.|+|.|||-.++.       .
T Consensus       174 ~li~~y~LK~R~yiGn-TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~s  252 (421)
T KOG2671|consen  174 ELIEKYDLKKRCYIGN-TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDES  252 (421)
T ss_pred             hHhhhcccccccccCC-cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcc
Confidence            3455666776666666 6778888888888888999999999999999999999999999999999988887       2


Q ss_pred             HHHHhcCCC----CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHH
Q 023482          179 VRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV  233 (281)
Q Consensus       179 a~~~~~~~~----~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~  233 (281)
                      .+.|++.++    -+.++.+|..+-++           +....||.||++|||......
T Consensus       253 i~aNFkQYg~~~~fldvl~~D~sn~~~-----------rsn~~fDaIvcDPPYGVRe~~  300 (421)
T KOG2671|consen  253 IKANFKQYGSSSQFLDVLTADFSNPPL-----------RSNLKFDAIVCDPPYGVREGA  300 (421)
T ss_pred             hhHhHHHhCCcchhhheeeecccCcch-----------hhcceeeEEEeCCCcchhhhh
Confidence            355666554    46788999988776           345789999999999866544

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.29  E-value=3.3e-06  Score=81.08  Aligned_cols=107  Identities=13%  Similarity=0.182  Sum_probs=83.4

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc----C--CEEEEEeCCHHHHHHHHHHhcCCC
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASID  187 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~  187 (281)
                      ...+..|+ |++++.+.+.|++.+.+.+..+|+|..||+|.+....+..    .  ..++|.|+++..+..|+.+.--++
T Consensus       160 ~~~k~~GE-fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg  238 (489)
T COG0286         160 AEGKEAGE-FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG  238 (489)
T ss_pred             hcCCCCCc-cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence            33344466 9999999999999999888889999999999987777653    1  569999999999999998875332


Q ss_pred             ---CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          188 ---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       188 ---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                         ++...++|...-|..+..       .....||+|++||||+
T Consensus       239 i~~~~~i~~~dtl~~~~~~~~-------~~~~~~D~viaNPPf~  275 (489)
T COG0286         239 IEGDANIRHGDTLSNPKHDDK-------DDKGKFDFVIANPPFS  275 (489)
T ss_pred             CCccccccccccccCCccccc-------CCccceeEEEeCCCCC
Confidence               467788887776644210       1336799999999996

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.28  E-value=1.2e-06  Score=72.16  Aligned_cols=61  Identities=28%  Similarity=0.367  Sum_probs=54.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccc
Q 023482          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIR  202 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~  202 (281)
                      .+.+.|+|+|+|.++...++...+|++||.+|.....|.+|+.-.  .|++++.||+.+..|+
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe   95 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFE   95 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccccc
Confidence            478999999999999999888779999999999999999996433  4999999999998874

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.24  E-value=1.7e-06  Score=73.64  Aligned_cols=93  Identities=17%  Similarity=0.307  Sum_probs=60.4

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcC-----------CCCeEEE
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFAS-----------IDQLKVL  192 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~-----------~~~v~~~  192 (281)
                      .+.....+++.+++.+++..+|||||.|......+.. ++ +.+|||+.+...+.|+.....           ..++++.
T Consensus        27 ~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~  106 (205)
T PF08123_consen   27 SPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI  106 (205)
T ss_dssp             HHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE
T ss_pred             CHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee
Confidence            4566778889999999999999999999988877765 54 699999999998877643321           1378899


Q ss_pred             EcCccccccccchhhHHHhhcCCCCccEEEEc-CCC
Q 023482          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPF  227 (281)
Q Consensus       193 ~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n-~P~  227 (281)
                      +||+.+.++.+   +++      ...|+|+.| .-|
T Consensus       107 ~gdfl~~~~~~---~~~------s~AdvVf~Nn~~F  133 (205)
T PF08123_consen  107 HGDFLDPDFVK---DIW------SDADVVFVNNTCF  133 (205)
T ss_dssp             CS-TTTHHHHH---HHG------HC-SEEEE--TTT
T ss_pred             ccCccccHhHh---hhh------cCCCEEEEecccc
Confidence            99988765322   111      346888886 444

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.24  E-value=1.1e-05  Score=72.59  Aligned_cols=97  Identities=11%  Similarity=0.357  Sum_probs=76.9

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCcccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKC  199 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~  199 (281)
                      |..-|-+.+.+++.+.+.++..++|.-+|.|..+..+++.  .++|+|+|.|+.+++.|++++... ++++++++++.++
T Consensus         2 ~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l   81 (305)
T TIGR00006         2 FFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANF   81 (305)
T ss_pred             CCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHH
Confidence            4445667888899998888899999999999999999986  479999999999999999988765 3899999999886


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCC
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIP  226 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P  226 (281)
                      ..      .+.. .....+|.|+.++=
T Consensus        82 ~~------~l~~-~~~~~vDgIl~DLG  101 (305)
T TIGR00006        82 FE------HLDE-LLVTKIDGILVDLG  101 (305)
T ss_pred             HH------HHHh-cCCCcccEEEEecc
Confidence            42      1111 12245788887653

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.19  E-value=1.2e-05  Score=71.86  Aligned_cols=100  Identities=17%  Similarity=0.201  Sum_probs=52.7

Q ss_pred             HHHHHHHHhcCCC-----CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-C---CeEEEEcCcc
Q 023482          129 INDQLAAAAAVQE-----GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-D---QLKVLQEDFV  197 (281)
Q Consensus       129 ~~~~l~~~l~~~~-----~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~---~v~~~~gD~~  197 (281)
                      ++.++...+....     .-++||||||.-.+=-.|..+  +-+++|.|+|+..++.|++++..+ +   +|+++...-.
T Consensus        85 Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~  164 (299)
T PF05971_consen   85 YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNP  164 (299)
T ss_dssp             HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST
T ss_pred             HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCc
Confidence            4455555554322     347999999987654444433  779999999999999999999876 2   7888766432


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHH
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~  235 (281)
                      ..     .|+.+.  ...+.||+..+||||+...+...
T Consensus       165 ~~-----i~~~i~--~~~e~~dftmCNPPFy~s~~e~~  195 (299)
T PF05971_consen  165 DN-----IFDGII--QPNERFDFTMCNPPFYSSQEEAE  195 (299)
T ss_dssp             -S-----STTTST--T--S-EEEEEE-----SS-----
T ss_pred             cc-----cchhhh--cccceeeEEecCCccccChhhhc
Confidence            21     111111  23468999999999988776543

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.17  E-value=3.5e-06  Score=72.22  Aligned_cols=87  Identities=10%  Similarity=0.155  Sum_probs=57.3

Q ss_pred             EEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      .++|+|||+|-.++.++..-.+|+|+|+|+.|++.|++..+...   ..++...+..++  .          -...+.|.
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L--~----------g~e~SVDl  103 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL--L----------GGEESVDL  103 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccc--c----------CCCcceee
Confidence            89999999997777778777799999999999999988765321   223333333332  2          12356677


Q ss_pred             EEEcCCCcccH-----HHHHHhccCCC
Q 023482          221 VVANIPFNIST-----DVIKQLLPMGD  242 (281)
Q Consensus       221 Vi~n~P~~~~~-----~~~~~ll~~~~  242 (281)
                      |++--.+||..     ..+.++|+..|
T Consensus       104 I~~Aqa~HWFdle~fy~~~~rvLRk~G  130 (261)
T KOG3010|consen  104 ITAAQAVHWFDLERFYKEAYRVLRKDG  130 (261)
T ss_pred             ehhhhhHHhhchHHHHHHHHHHcCCCC
Confidence            77655555443     44456665554

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.17  E-value=9.6e-06  Score=77.25  Aligned_cols=93  Identities=14%  Similarity=0.153  Sum_probs=74.1

Q ss_pred             ccCCHHHHHHHHHHh--cCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcC
Q 023482          123 YMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQED  195 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD  195 (281)
                      |+.+..........+  .+.++.+|||+++|.|.=|..++..   ...|+++|+++..++.+++++++.+  |+.+.+.|
T Consensus        93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D  172 (470)
T PRK11933         93 FYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFD  172 (470)
T ss_pred             EEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence            455544555555556  6788999999999999999999886   3589999999999999999998775  88999999


Q ss_pred             ccccccccchhhHHHhhcCCCCccEEEEcCC
Q 023482          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (281)
Q Consensus       196 ~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P  226 (281)
                      ...+.-           .....||.|+.+.|
T Consensus       173 ~~~~~~-----------~~~~~fD~ILvDaP  192 (470)
T PRK11933        173 GRVFGA-----------ALPETFDAILLDAP  192 (470)
T ss_pred             hhhhhh-----------hchhhcCeEEEcCC
Confidence            887531           12356999999887

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.13  E-value=1.1e-05  Score=69.13  Aligned_cols=115  Identities=15%  Similarity=0.191  Sum_probs=71.6

Q ss_pred             cccCCHHHHHHHHHHhcC-CCC--CEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEE
Q 023482          122 HYMLNSEINDQLAAAAAV-QEG--DIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID-QLKVLQ  193 (281)
Q Consensus       122 ~~~~~~~~~~~l~~~l~~-~~~--~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~  193 (281)
                      .|+.++.++..-...+.. ...  .+|||||||.|.....+.+.    +.+|++.|.++.+++..+++..... ++.-..
T Consensus        49 rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv  128 (264)
T KOG2361|consen   49 RFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFV  128 (264)
T ss_pred             cccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccc
Confidence            366677666554444432 222  27999999999999999885    2589999999999999998765433 444444


Q ss_pred             cCccccccccchhhHHHhhcCCCCccEEE-----EcCCCcc---cHHHHHHhccCCCCc
Q 023482          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVV-----ANIPFNI---STDVIKQLLPMGDIF  244 (281)
Q Consensus       194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi-----~n~P~~~---~~~~~~~ll~~~~~~  244 (281)
                      .|+..-.....        ...+++|+|+     +..+-..   .-+.+.+++++||.+
T Consensus       129 ~Dlt~~~~~~~--------~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~l  179 (264)
T KOG2361|consen  129 WDLTSPSLKEP--------PEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSL  179 (264)
T ss_pred             eeccchhccCC--------CCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEE
Confidence            44432211000        2234555544     3433322   224556888999876

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.01  E-value=3e-05  Score=62.04  Aligned_cols=60  Identities=23%  Similarity=0.421  Sum_probs=47.4

Q ss_pred             CCCCEEEEEcCCccHHHHHHHH-----c-CCEEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEcCcccc
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLN-----A-GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKC  199 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~-----~-~~~v~gvD~s~~~l~~a~~~~~~~-----~~v~~~~gD~~~~  199 (281)
                      .+...|+|+|||-|+++..++.     . +.+|+|||.++..++.+..+....     .++++..++..+.
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   94 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE   94 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence            4677999999999999999999     4 679999999999999888776532     2555666655443

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.95  E-value=7.7e-05  Score=63.67  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=85.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~  196 (281)
                      ....++....+...+....++++||||.=||++++.+|..   +++|+++|+++..++.+....+..+   +|++++|++
T Consensus        55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a  134 (237)
T KOG1663|consen   55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA  134 (237)
T ss_pred             eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence            4555666666666667778899999999999999999876   7899999999999999987776554   899999998


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcC---CCcccHHHHHHhccCCCCc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANI---PFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~---P~~~~~~~~~~ll~~~~~~  244 (281)
                      .+.-     ..++.. ...+.||.+|.+.   -|...-+-.-+|++.|+.+
T Consensus       135 ~esL-----d~l~~~-~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi  179 (237)
T KOG1663|consen  135 LESL-----DELLAD-GESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVI  179 (237)
T ss_pred             hhhH-----HHHHhc-CCCCceeEEEEccchHHHHHHHHHHHhhcccccEE
Confidence            7631     011111 2457899999864   2333334445777888765

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.95  E-value=7.9e-05  Score=67.59  Aligned_cols=93  Identities=19%  Similarity=0.273  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      .++.++||+||++|.+|..|+++|.+|+|||..+ |-    ..+...++|+.+.+|......            ....+|
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~----~~L~~~~~V~h~~~d~fr~~p------------~~~~vD  272 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA----QSLMDTGQVEHLRADGFKFRP------------PRKNVD  272 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC----HhhhCCCCEEEEeccCcccCC------------CCCCCC
Confidence            4788999999999999999999999999999544 22    233445699999999877642            136789


Q ss_pred             EEEEcCCCc--ccHHHHHHhccCCCCcceEEEe
Q 023482          220 KVVANIPFN--ISTDVIKQLLPMGDIFSEVVLL  250 (281)
Q Consensus       220 ~Vi~n~P~~--~~~~~~~~ll~~~~~~~~~~~~  250 (281)
                      .++++.--.  .....+.+++..+ .-..+++.
T Consensus       273 wvVcDmve~P~rva~lm~~Wl~~g-~cr~aIfn  304 (357)
T PRK11760        273 WLVCDMVEKPARVAELMAQWLVNG-WCREAIFN  304 (357)
T ss_pred             EEEEecccCHHHHHHHHHHHHhcC-cccEEEEE
Confidence            999975321  2224555666544 33344433

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.94  E-value=2.2e-05  Score=62.51  Aligned_cols=55  Identities=16%  Similarity=0.281  Sum_probs=47.0

Q ss_pred             EEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccc
Q 023482          144 IVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~  198 (281)
                      +++|+|||.|.++..++..+  .+|+++|.++.+++.+++++..+  .++++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            48999999999999999874  37999999999999999998754  368888877654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=0.00012  Score=67.48  Aligned_cols=95  Identities=19%  Similarity=0.297  Sum_probs=74.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~  196 (281)
                      ++.+..........+.+.+|.+|||++++.|.=|..+++.    +..|+++|+++.-+...++++.+.+  |+.+++.|.
T Consensus       138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~  217 (355)
T COG0144         138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA  217 (355)
T ss_pred             EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence            4445555555566788999999999999999999888886    3467999999999999999999876  788999998


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCC
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P  226 (281)
                      ..++-..         .....||.|+.+.|
T Consensus       218 ~~~~~~~---------~~~~~fD~iLlDaP  238 (355)
T COG0144         218 RRLAELL---------PGGEKFDRILLDAP  238 (355)
T ss_pred             ccccccc---------cccCcCcEEEECCC
Confidence            7664211         11235899998877

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.84  E-value=6.7e-05  Score=68.49  Aligned_cols=97  Identities=21%  Similarity=0.324  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcC---------C--C-CeEEEEcCccccccccchhh
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS---------I--D-QLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~---------~--~-~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ++.+|||+|||-|.-+.-.... -.+++|+|++...++.|+++...         .  . ...++.+|.....+.+.   
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~---  138 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK---  138 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT---
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh---
Confidence            6789999999977755555554 56999999999999999998821         1  1 45678888775432221   


Q ss_pred             HHHhhcC-CCCccEEEEcC--CCcccHH-----H---HHHhccCCCCc
Q 023482          208 LFERRKS-SSGFAKVVANI--PFNISTD-----V---IKQLLPMGDIF  244 (281)
Q Consensus       208 ~v~~~~~-~~~~d~Vi~n~--P~~~~~~-----~---~~~ll~~~~~~  244 (281)
                       +   .. ...||+|-+-.  .|...++     +   +...|++||.|
T Consensus       139 -~---~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~F  182 (331)
T PF03291_consen  139 -L---PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYF  182 (331)
T ss_dssp             -S---SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEE
T ss_pred             -c---cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEE
Confidence             0   12 25899888754  3432221     2   23566777776

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.83  E-value=0.00013  Score=63.49  Aligned_cols=85  Identities=16%  Similarity=0.227  Sum_probs=60.4

Q ss_pred             HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhH
Q 023482          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      ..+..........+|+|||.|+|.++..+++.  +.+++.+|. |..++.+++    .++|+++.||+. -+++      
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f-~~~P------  157 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFF-DPLP------  157 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TT-TCCS------
T ss_pred             hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHH-hhhc------
Confidence            34455556666779999999999999999987  679999999 888888888    469999999998 3331      


Q ss_pred             HHhhcCCCCccEEEEc-CCCcccHHHHH
Q 023482          209 FERRKSSSGFAKVVAN-IPFNISTDVIK  235 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n-~P~~~~~~~~~  235 (281)
                             . +|+++.. .-..|..+...
T Consensus       158 -------~-~D~~~l~~vLh~~~d~~~~  177 (241)
T PF00891_consen  158 -------V-ADVYLLRHVLHDWSDEDCV  177 (241)
T ss_dssp             -------S-ESEEEEESSGGGS-HHHHH
T ss_pred             -------c-ccceeeehhhhhcchHHHH
Confidence                   3 7877764 44455554433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.74  E-value=9.1e-05  Score=61.73  Aligned_cols=87  Identities=21%  Similarity=0.340  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccch
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~  205 (281)
                      .+.+++...-..-.+++|||+|+|+|.-+++.+..|+ .|++.|+++...+.++.|.+.++ ++.+.+.|...-      
T Consensus        66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~------  139 (218)
T COG3897          66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGS------  139 (218)
T ss_pred             HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCC------
Confidence            3455666665666889999999999999999999876 89999999999998888888777 889999988762      


Q ss_pred             hhHHHhhcCCCCccEEEE-cCCCcc
Q 023482          206 LSLFERRKSSSGFAKVVA-NIPFNI  229 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~-n~P~~~  229 (281)
                               +..+|+|+. ++-|+.
T Consensus       140 ---------~~~~Dl~LagDlfy~~  155 (218)
T COG3897         140 ---------PPAFDLLLAGDLFYNH  155 (218)
T ss_pred             ---------CcceeEEEeeceecCc
Confidence                     256777775 455543

>PRK00536 speE spermidine synthase; Provisional

Probab=97.73  E-value=0.00025  Score=62.53  Aligned_cols=90  Identities=14%  Similarity=0.190  Sum_probs=68.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC------CCeEEEEcCccccccccchhhHHHhhc
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~------~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      ..+++||=||-|.|..++.+.++..+|+-||+|+++++.+++.++..      ++++++.. +.+              .
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--------------~  135 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--------------L  135 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--------------c
Confidence            45689999999999999999998669999999999999999966532      37777651 111              2


Q ss_pred             CCCCccEEEEcCCCcc-cHHHHHHhccCCCCc
Q 023482          214 SSSGFAKVVANIPFNI-STDVIKQLLPMGDIF  244 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~~-~~~~~~~ll~~~~~~  244 (281)
                      ..+.||+||.+..+.. .-..+++.|+++|.+
T Consensus       136 ~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~  167 (262)
T PRK00536        136 DIKKYDLIICLQEPDIHKIDGLKRMLKEDGVF  167 (262)
T ss_pred             cCCcCCEEEEcCCCChHHHHHHHHhcCCCcEE
Confidence            2367999999854432 224567888888876

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.71  E-value=0.00038  Score=62.11  Aligned_cols=91  Identities=20%  Similarity=0.315  Sum_probs=69.6

Q ss_pred             CEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCC------CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          143 DIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~------~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      ++||-||-|.|..+..+.+..  .+++.||+++..++.+++.+...      ++++++.+|+.++--           ..
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~-----------~~  146 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR-----------DC  146 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH-----------hC
Confidence            699999999999999999984  59999999999999999988642      488999999887531           12


Q ss_pred             CCCccEEEEcC--CCcc-----cH---HHHHHhccCCCCc
Q 023482          215 SSGFAKVVANI--PFNI-----ST---DVIKQLLPMGDIF  244 (281)
Q Consensus       215 ~~~~d~Vi~n~--P~~~-----~~---~~~~~ll~~~~~~  244 (281)
                      ...||+||.+.  |-..     ..   .-+++.|+++|.+
T Consensus       147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~  186 (282)
T COG0421         147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIF  186 (282)
T ss_pred             CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEE
Confidence            34799999863  3111     11   3445777777766

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.71  E-value=0.00028  Score=61.55  Aligned_cols=113  Identities=20%  Similarity=0.298  Sum_probs=73.7

Q ss_pred             cCccccCCHHHHHHHHHHhc-----CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482          119 LGQHYMLNSEINDQLAAAAA-----VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (281)
Q Consensus       119 ~g~~~~~~~~~~~~l~~~l~-----~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~  193 (281)
                      .|..|....+-...++..-+     -....++||||+|.|..|..|+..-.+|++.|.|+.|....+++     +.+++.
T Consensus        67 RG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-----g~~vl~  141 (265)
T PF05219_consen   67 RGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-----GFTVLD  141 (265)
T ss_pred             CCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-----CCeEEe
Confidence            35567766666666665441     12456899999999999999999878999999999998777653     444443


Q ss_pred             cCccccccccchhhHHHhhcCCCCccEEEE-cC------CCcccHHHHHHhccCCCCcceEEEee
Q 023482          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVA-NI------PFNISTDVIKQLLPMGDIFSEVVLLL  251 (281)
Q Consensus       194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~-n~------P~~~~~~~~~~ll~~~~~~~~~~~~~  251 (281)
                      .|  ++.            ..+.+||+|.+ |+      |.....++ ++.++++|.+-.++.+-
T Consensus       142 ~~--~w~------------~~~~~fDvIscLNvLDRc~~P~~LL~~i-~~~l~p~G~lilAvVlP  191 (265)
T PF05219_consen  142 ID--DWQ------------QTDFKFDVISCLNVLDRCDRPLTLLRDI-RRALKPNGRLILAVVLP  191 (265)
T ss_pred             hh--hhh------------ccCCceEEEeehhhhhccCCHHHHHHHH-HHHhCCCCEEEEEEEec
Confidence            33  222            22357888876 32      33333344 34556677766655543

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.69  E-value=6.6e-05  Score=64.53  Aligned_cols=46  Identities=24%  Similarity=0.362  Sum_probs=41.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASI  186 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~  186 (281)
                      .+..+|||||-.|.+|..+|+. ++ .|+|+|||+..++.|+++++..
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence            5678999999999999999997 54 8999999999999999998743

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.69  E-value=0.00021  Score=64.34  Aligned_cols=94  Identities=13%  Similarity=0.288  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCcccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d  203 (281)
                      |-+.+.+++.+.+.++..++|.--|.|..+..+++.  .++|+|+|.|+.+++.|++++... +++.++++++.++.-  
T Consensus         6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~--   83 (310)
T PF01795_consen    6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE--   83 (310)
T ss_dssp             -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH--
T ss_pred             cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH--
Confidence            446778888888888999999999999999999986  579999999999999999988765 499999999988642  


Q ss_pred             chhhHHHhhc-CCCCccEEEEcCCC
Q 023482          204 HMLSLFERRK-SSSGFAKVVANIPF  227 (281)
Q Consensus       204 ~~~d~v~~~~-~~~~~d~Vi~n~P~  227 (281)
                          .+.. . ....+|.|+.++=.
T Consensus        84 ----~l~~-~~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   84 ----YLKE-LNGINKVDGILFDLGV  103 (310)
T ss_dssp             ----HHHH-TTTTS-EEEEEEE-S-
T ss_pred             ----HHHH-ccCCCccCEEEEcccc
Confidence                2221 2 34678999987653

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.61  E-value=0.00015  Score=61.87  Aligned_cols=91  Identities=13%  Similarity=0.214  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      -+.++|||||-|++...+...+ .+++-+|.|-.|++.++..-...=.+....+|-+.++|.++++            |.
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~------------DL  140 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSV------------DL  140 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccch------------hh
Confidence            4579999999999999998885 4999999999999998865331115667889999999877554            55


Q ss_pred             EEEcCCCcccHH------HHHHhccCCCCc
Q 023482          221 VVANIPFNISTD------VIKQLLPMGDIF  244 (281)
Q Consensus       221 Vi~n~P~~~~~~------~~~~ll~~~~~~  244 (281)
                      |++.+-.+|..+      -++..+++.+.|
T Consensus       141 iisSlslHW~NdLPg~m~~ck~~lKPDg~F  170 (325)
T KOG2940|consen  141 IISSLSLHWTNDLPGSMIQCKLALKPDGLF  170 (325)
T ss_pred             hhhhhhhhhhccCchHHHHHHHhcCCCccc
Confidence            565555544332      234556666655

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.61  E-value=0.00039  Score=60.95  Aligned_cols=94  Identities=19%  Similarity=0.295  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHhh
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      .+++||-||-|.|..+..+.+..  .+|+.||+|+..++.|++.+..      .++++++.+|+..+--           
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~-----------  144 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK-----------  144 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH-----------
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH-----------
Confidence            57899999999999999999874  5999999999999999987652      2489999999977521           


Q ss_pred             cCCC-CccEEEEcCCC--cc-----cH---HHHHHhccCCCCcc
Q 023482          213 KSSS-GFAKVVANIPF--NI-----ST---DVIKQLLPMGDIFS  245 (281)
Q Consensus       213 ~~~~-~~d~Vi~n~P~--~~-----~~---~~~~~ll~~~~~~~  245 (281)
                      .... .||+|+.+.+-  ..     ..   ..+++.|.++|.+.
T Consensus       145 ~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v  188 (246)
T PF01564_consen  145 ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLV  188 (246)
T ss_dssp             TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred             hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEE
Confidence            2234 79999986542  11     12   34457777776653

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.61  E-value=0.00024  Score=63.57  Aligned_cols=96  Identities=21%  Similarity=0.329  Sum_probs=74.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~  197 (281)
                      ++.+..........+.+.++..|||+++|.|.=|..+++.   .+.|++.|+++..+...+.+..+.+  ++.++..|+.
T Consensus        67 ~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~  146 (283)
T PF01189_consen   67 FYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADAR  146 (283)
T ss_dssp             EEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHH
T ss_pred             EEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccc
Confidence            4444444444556678889999999999999999999886   3599999999999999999988775  8888888887


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      .....          .....||.|+.+.|=.
T Consensus       147 ~~~~~----------~~~~~fd~VlvDaPCS  167 (283)
T PF01189_consen  147 KLDPK----------KPESKFDRVLVDAPCS  167 (283)
T ss_dssp             HHHHH----------HHTTTEEEEEEECSCC
T ss_pred             ccccc----------ccccccchhhcCCCcc
Confidence            76321          1224599999988854

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.60  E-value=0.00011  Score=59.99  Aligned_cols=69  Identities=10%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             EEEeCCHHHHHHHHHHhcCC-----CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc------HHHHH
Q 023482          167 LAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS------TDVIK  235 (281)
Q Consensus       167 ~gvD~s~~~l~~a~~~~~~~-----~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~------~~~~~  235 (281)
                      +|+|+|++|++.|+++....     .+++++++|+.++|+.+            +.||+|+++.-+++.      -..+.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~------------~~fD~v~~~~~l~~~~d~~~~l~ei~   68 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD------------CEFDAVTMGYGLRNVVDRLRAMKEMY   68 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC------------CCeeEEEecchhhcCCCHHHHHHHHH
Confidence            58999999999998765421     37999999999998654            568888876433321      13446


Q ss_pred             HhccCCCCcceE
Q 023482          236 QLLPMGDIFSEV  247 (281)
Q Consensus       236 ~ll~~~~~~~~~  247 (281)
                      +++++||.+...
T Consensus        69 rvLkpGG~l~i~   80 (160)
T PLN02232         69 RVLKPGSRVSIL   80 (160)
T ss_pred             HHcCcCeEEEEE
Confidence            888999887444

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.55  E-value=0.00017  Score=64.39  Aligned_cols=109  Identities=20%  Similarity=0.318  Sum_probs=71.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC----C----CeEEEEcCccccc
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----D----QLKVLQEDFVKCH  200 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~----~----~v~~~~gD~~~~~  200 (281)
                      ++.++-..-.++++.++|+|||-|.-++..-..+. +++|+||.+..+++|+++....    .    .+.|+.||-....
T Consensus       106 IKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~  185 (389)
T KOG1975|consen  106 IKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER  185 (389)
T ss_pred             HHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence            33333333345778899999999998877777654 9999999999999999887632    1    5789999976643


Q ss_pred             cccchhhHHHhhcCCCCccEEEEc--CCCcccHHH--------HHHhccCCCCc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVAN--IPFNISTDV--------IKQLLPMGDIF  244 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n--~P~~~~~~~--------~~~ll~~~~~~  244 (281)
                      +.    |+++  ....+||+|-+-  ..|.+.+..        +.++|++||.|
T Consensus       186 l~----d~~e--~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~F  233 (389)
T KOG1975|consen  186 LM----DLLE--FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVF  233 (389)
T ss_pred             HH----Hhcc--CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEE
Confidence            32    2221  122338877664  344333311        12667788766

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.54  E-value=0.00035  Score=59.48  Aligned_cols=55  Identities=24%  Similarity=0.350  Sum_probs=47.9

Q ss_pred             EEEEcCCccHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccc
Q 023482          145 VLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (281)
Q Consensus       145 VLDiGcG~G~~t~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~  199 (281)
                      |.||||--|++...|.+.+.  +++++|+++.-++.|++++...+   ++++..+|..+.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~   60 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV   60 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc
Confidence            68999999999999999975  89999999999999999998664   899999997763

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.53  E-value=0.00029  Score=58.97  Aligned_cols=88  Identities=23%  Similarity=0.306  Sum_probs=65.4

Q ss_pred             EEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          144 IVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      +++|||+|.|.=++.++-.  ..+++.+|....-+...+.-....  .|++++++++++ +            .....||
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~------------~~~~~fd  117 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P------------EYRESFD  117 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T------------TTTT-EE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c------------ccCCCcc
Confidence            8999999999977777654  679999999999888887766544  489999999998 2            2347899


Q ss_pred             EEEEc--CCCcccHHHHHHhccCCCCc
Q 023482          220 KVVAN--IPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       220 ~Vi~n--~P~~~~~~~~~~ll~~~~~~  244 (281)
                      +|++-  -|.....+....+++.++.+
T Consensus       118 ~v~aRAv~~l~~l~~~~~~~l~~~G~~  144 (184)
T PF02527_consen  118 VVTARAVAPLDKLLELARPLLKPGGRL  144 (184)
T ss_dssp             EEEEESSSSHHHHHHHHGGGEEEEEEE
T ss_pred             EEEeehhcCHHHHHHHHHHhcCCCCEE
Confidence            99985  34445556666777666543

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.52  E-value=0.00066  Score=58.02  Aligned_cols=90  Identities=19%  Similarity=0.261  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCccHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~--~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|||+|.|.=++.+|=  ...+|+-+|....-+...+....+.+  |++++++.++++...             ..
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-------------~~  134 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE-------------KK  134 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc-------------cc
Confidence            58999999999998888763  35679999999998888887766554  899999999998532             23


Q ss_pred             -ccEEEEc--CCCcccHHHHHHhccCCCCc
Q 023482          218 -FAKVVAN--IPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       218 -~d~Vi~n--~P~~~~~~~~~~ll~~~~~~  244 (281)
                       ||+|.+-  -+..........+++.++.+
T Consensus       135 ~~D~vtsRAva~L~~l~e~~~pllk~~g~~  164 (215)
T COG0357         135 QYDVVTSRAVASLNVLLELCLPLLKVGGGF  164 (215)
T ss_pred             cCcEEEeehccchHHHHHHHHHhcccCCcc
Confidence             8999984  45566667777888887654

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.51  E-value=0.00017  Score=62.22  Aligned_cols=87  Identities=21%  Similarity=0.348  Sum_probs=53.1

Q ss_pred             HHHHHhcCCCC--CEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC------C-----CCeEEEEcCccc
Q 023482          132 QLAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS------I-----DQLKVLQEDFVK  198 (281)
Q Consensus       132 ~l~~~l~~~~~--~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~------~-----~~v~~~~gD~~~  198 (281)
                      .+++.+++.++  .+|||.-+|-|.-+..++..|++|+++|.||.+....+.-+..      .     .+++++++|..+
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~  143 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE  143 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence            45666666665  4899999999999999998899999999999887665532211      1     279999999988


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      +--           ....+||+|+.+|.|..
T Consensus       144 ~L~-----------~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  144 YLR-----------QPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             HCC-----------CHSS--SEEEE--S---
T ss_pred             HHh-----------hcCCCCCEEEECCCCCC
Confidence            521           12368999999998854

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.45  E-value=0.00019  Score=59.61  Aligned_cols=74  Identities=23%  Similarity=0.427  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+.+|||+||++|.++..+.+.+   .+|+|+|+.+.         ....++..+++|+.+....+...+.+.  .....
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~--~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLP--ESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHG--TTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhcc--ccccC
Confidence            34799999999999999999987   69999999876         222478888899866422211111110  12368


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      +|+|+++.
T Consensus        92 ~dlv~~D~   99 (181)
T PF01728_consen   92 FDLVLSDM   99 (181)
T ss_dssp             ESEEEE--
T ss_pred             cceecccc
Confidence            99999986

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.39  E-value=0.0011  Score=59.03  Aligned_cols=94  Identities=11%  Similarity=0.254  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccc
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCH  200 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~  200 (281)
                      .-+-+.+.+++.+.+.++...+|.--|.|..+..+.+..   ++++|+|.|+.+++.|++.+..+ ++++++++++.++.
T Consensus         7 HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~   86 (314)
T COG0275           7 HIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLA   86 (314)
T ss_pred             ccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHH
Confidence            345678889999999999999999999999999999873   58999999999999999999875 49999999988765


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcC
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      ...      .. ...+.+|.|+.++
T Consensus        87 ~~l------~~-~~i~~vDGiL~DL  104 (314)
T COG0275          87 EAL------KE-LGIGKVDGILLDL  104 (314)
T ss_pred             HHH------Hh-cCCCceeEEEEec
Confidence            321      11 1235677777654

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.34  E-value=0.0026  Score=55.01  Aligned_cols=109  Identities=14%  Similarity=0.175  Sum_probs=59.3

Q ss_pred             CCCCCcccCccccCCHHHHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHhcCCC
Q 023482          112 GRFPRKSLGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID  187 (281)
Q Consensus       112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~--~~~~v~gvD~s~~~l~~a~~~~~~~~  187 (281)
                      ...+...+.|.+.+....+.+..-...-  -.|++||=+|=+--. +++++.  ...+|+.+|+|+..++..++..++.+
T Consensus        13 RP~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g   91 (243)
T PF01861_consen   13 RPEPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEG   91 (243)
T ss_dssp             -----GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT
T ss_pred             CCCCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC
Confidence            3456667888788877777666655543  257899999844433 222332  35699999999999999998877655


Q ss_pred             -CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccH
Q 023482          188 -QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (281)
Q Consensus       188 -~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~  231 (281)
                       +|+.++.|+.+- ++.         .-.++||.++.+|||....
T Consensus        92 l~i~~~~~DlR~~-LP~---------~~~~~fD~f~TDPPyT~~G  126 (243)
T PF01861_consen   92 LPIEAVHYDLRDP-LPE---------ELRGKFDVFFTDPPYTPEG  126 (243)
T ss_dssp             --EEEE---TTS----T---------TTSS-BSEEEE---SSHHH
T ss_pred             CceEEEEeccccc-CCH---------HHhcCCCEEEeCCCCCHHH
Confidence             799999998762 222         2247899999999997543

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.33  E-value=0.0012  Score=55.81  Aligned_cols=99  Identities=21%  Similarity=0.258  Sum_probs=61.9

Q ss_pred             CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--Ce-EEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QL-KVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v-~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +.+|||||||||-.+..+++.  .....--|+++......+......+  |+ .-+.-|+.+-+.+-..-.    .....
T Consensus        26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~----~~~~~  101 (204)
T PF06080_consen   26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPA----PLSPE  101 (204)
T ss_pred             CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccccc----ccCCC
Confidence            336999999999999999997  5688889999999877776665432  33 234555555432210000    01235


Q ss_pred             CccEEEEcC-----CCcccHHHH---HHhccCCCCc
Q 023482          217 GFAKVVANI-----PFNISTDVI---KQLLPMGDIF  244 (281)
Q Consensus       217 ~~d~Vi~n~-----P~~~~~~~~---~~ll~~~~~~  244 (281)
                      .||.|++..     |+.....++   .++|+++|.+
T Consensus       102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L  137 (204)
T PF06080_consen  102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLL  137 (204)
T ss_pred             CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEE
Confidence            799999843     333333333   2666776654

The function of this family is unknown.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.30  E-value=0.0009  Score=59.62  Aligned_cols=75  Identities=20%  Similarity=0.225  Sum_probs=59.7

Q ss_pred             EEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEE
Q 023482          144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi  222 (281)
                      +|+|+.||.|.++..+.+.|. .+.++|+++.+++..+.|+..    .++++|+.++...+         . ...+|+++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~----~~~~~Di~~~~~~~---------~-~~~~D~l~   67 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN----KLIEGDITKIDEKD---------F-IPDIDLLT   67 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC----CCccCccccCchhh---------c-CCCCCEEE
Confidence            589999999999999988877 578899999999999988763    26788888875321         0 25689999


Q ss_pred             EcCCCcccHH
Q 023482          223 ANIPFNISTD  232 (281)
Q Consensus       223 ~n~P~~~~~~  232 (281)
                      +.+|-+..+.
T Consensus        68 ~gpPCq~fS~   77 (275)
T cd00315          68 GGFPCQPFSI   77 (275)
T ss_pred             eCCCChhhhH
Confidence            9999765443

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PRK11524 putative methyltransferase; Provisional

Probab=97.22  E-value=0.0013  Score=58.94  Aligned_cols=59  Identities=20%  Similarity=0.277  Sum_probs=51.2

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      .+.++.++++.... .+|+.|||..||+|..+.+..+.+-+.+|+|++++.++.|++++.
T Consensus       193 kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        193 KPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             ChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence            34567777777665 578999999999999998888889999999999999999999986

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.19  E-value=0.0014  Score=55.85  Aligned_cols=58  Identities=24%  Similarity=0.353  Sum_probs=45.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE  181 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~  181 (281)
                      ...+..++++++.... .+++.|||..||+|..+.+..+.+.+.+|+|+++..++.|++
T Consensus       174 ~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  174 TQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            3456788888887765 568899999999999999888889999999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.16  E-value=0.003  Score=54.46  Aligned_cols=115  Identities=21%  Similarity=0.240  Sum_probs=71.4

Q ss_pred             HHHHHhcCC-CCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEE-EEcCccccccccchhhH
Q 023482          132 QLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKV-LQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       132 ~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~-~~gD~~~~~~~d~~~d~  208 (281)
                      ..++...+. ++..+||||+-||.+|-.+.+.|+ +|+|||+....+.+-   ++..+++.+ ...|+..+...+     
T Consensus        69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~d~rV~~~E~tN~r~l~~~~-----  140 (245)
T COG1189          69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRNDPRVIVLERTNVRYLTPED-----  140 (245)
T ss_pred             HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---HhcCCcEEEEecCChhhCCHHH-----
Confidence            344444443 678999999999999999999966 999999987666553   333335543 444666554332     


Q ss_pred             HHhhcCCCCccEEEEcCCCcccH---HHHHHhccCCCCcceEEEeehhhHHHHhc
Q 023482          209 FERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGDIFSEVVLLLQEETALRLV  260 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~~~~~---~~~~~ll~~~~~~~~~~~~~~~~~a~rl~  260 (281)
                           -.+..|.++++.-|-...   |.+..++++++.+ ....-.|-|.....+
T Consensus       141 -----~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~-v~LvKPQFEagr~~v  189 (245)
T COG1189         141 -----FTEKPDLIVIDVSFISLKLILPALLLLLKDGGDL-VLLVKPQFEAGREQV  189 (245)
T ss_pred             -----cccCCCeEEEEeehhhHHHHHHHHHHhcCCCceE-EEEecchhhhhhhhc
Confidence                 113678888887764443   4455666655432 223334445554544

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.10  E-value=0.0052  Score=54.39  Aligned_cols=40  Identities=25%  Similarity=0.153  Sum_probs=35.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR  180 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~  180 (281)
                      ...+||-.|||.|.++..+|..|..+.|.|.|--|+-...
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~   95 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN   95 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH
Confidence            3468999999999999999999999999999999975443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.09  E-value=0.0026  Score=54.52  Aligned_cols=102  Identities=14%  Similarity=0.210  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhcCC------CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC----CeEEEEc
Q 023482          127 SEINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID----QLKVLQE  194 (281)
Q Consensus       127 ~~~~~~l~~~l~~~------~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~g  194 (281)
                      .+++.++...+...      +.-++||||.|.-.+--.+-.+  |-+.+|.|+|+..++.|+..+..+.    .|++...
T Consensus        58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~q  137 (292)
T COG3129          58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQ  137 (292)
T ss_pred             hHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEec
Confidence            45566666665322      3347899998866544444333  6699999999999999999987663    5665543


Q ss_pred             CccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHH
Q 023482          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK  235 (281)
Q Consensus       195 D~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~  235 (281)
                      .=.+--|++    ++   .....||...+||||+...+...
T Consensus       138 k~~~~if~g----ii---g~nE~yd~tlCNPPFh~s~~da~  171 (292)
T COG3129         138 KDSDAIFNG----II---GKNERYDATLCNPPFHDSAADAR  171 (292)
T ss_pred             cCccccccc----cc---cccceeeeEecCCCcchhHHHHH
Confidence            322221221    11   23478999999999987775543

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.07  E-value=0.0034  Score=56.18  Aligned_cols=60  Identities=18%  Similarity=0.170  Sum_probs=40.6

Q ss_pred             ccCCHHHHHHHHHHhcCC-CCCEEEEEcCCccH----HHHHHHHc------CCEEEEEeCCHHHHHHHHHH
Q 023482          123 YMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGS----LTNVLLNA------GATVLAIEKDQHMVGLVRER  182 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~----~t~~la~~------~~~v~gvD~s~~~l~~a~~~  182 (281)
                      |+.++...+.+.+.+... ..-+|+..||+||-    +++.+.+.      ..+|+|+|+|+.+++.|++-
T Consensus        96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611         96 FFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             ccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            555655555555444322 23599999999997    33333332      24899999999999999854

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.07  E-value=0.0035  Score=56.98  Aligned_cols=66  Identities=17%  Similarity=0.335  Sum_probs=50.2

Q ss_pred             HHHHHhcCCCCCEEEEEcCCccHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHhc--CCCCeEE--EEcCcccc
Q 023482          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFA--SIDQLKV--LQEDFVKC  199 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~------~~~v~gvD~s~~~l~~a~~~~~--~~~~v~~--~~gD~~~~  199 (281)
                      .|...+.  ++..|+|+|||.|.=+..|.+.      ..++++||+|.++++.+..++.  ..+.+++  ++||+.+.
T Consensus        69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            3444443  5668999999999987766553      3589999999999999999887  3355665  89998663

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.0013  Score=52.58  Aligned_cols=75  Identities=15%  Similarity=0.252  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (281)
                      +-++.++..+...+..+.+|+|+|.|.+-.+.++.+ ..-+|+|+++-.+.+++-+.-+.   +..+|..-|..+.++.
T Consensus        59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~  137 (199)
T KOG4058|consen   59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR  137 (199)
T ss_pred             HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence            345556667766666689999999999999999887 58999999999999988665433   3788889999888754

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=96.99  E-value=0.0039  Score=53.21  Aligned_cols=71  Identities=14%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC-C-CeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          142 GDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~-~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      ..+.||.|+|.|..|..+... -.+|..||..+..++.|++.+... + -.++.+....++.            .....|
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~------------P~~~~Y  123 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT------------PEEGKY  123 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----------------TT-E
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc------------CCCCcE
Confidence            458999999999999877655 559999999999999999887652 2 3467777777654            233689


Q ss_pred             cEEEEc
Q 023482          219 AKVVAN  224 (281)
Q Consensus       219 d~Vi~n  224 (281)
                      |+|...
T Consensus       124 DlIW~Q  129 (218)
T PF05891_consen  124 DLIWIQ  129 (218)
T ss_dssp             EEEEEE
T ss_pred             eEEEeh
Confidence            999875

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.99  E-value=0.0043  Score=55.25  Aligned_cols=50  Identities=14%  Similarity=0.172  Sum_probs=39.1

Q ss_pred             hcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC
Q 023482          137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI  186 (281)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~  186 (281)
                      +....+.+|||+|||+|..+.++.+.   -.+++++|.|+.|++.++..+...
T Consensus        29 ~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   29 LPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             CcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            33345679999999999877666553   348999999999999998877644

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK13699 putative methylase; Provisional

Probab=96.96  E-value=0.0036  Score=54.23  Aligned_cols=61  Identities=21%  Similarity=0.196  Sum_probs=51.3

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~  185 (281)
                      ..+-++.+.+++... .+|+.|||..||+|..+.+..+.+.+.+|+|++++..+.|.+++..
T Consensus       147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence            345567777776554 4788999999999999988888899999999999999999988763

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.89  E-value=0.0096  Score=45.77  Aligned_cols=88  Identities=25%  Similarity=0.412  Sum_probs=56.0

Q ss_pred             EEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCC--eEEEEcCccc--cccccchhhHHHhhcCCCC
Q 023482          145 VLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVK--CHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       145 VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--v~~~~gD~~~--~~~~d~~~d~v~~~~~~~~  217 (281)
                      ++|+|||+|..+ .++..   +..++++|+++.++..++........  +.+..+|...  +++.+           ...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~  119 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFED-----------SAS  119 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCC-----------CCc
Confidence            999999999976 34333   24899999999999986655533112  6888888876  55432           135


Q ss_pred             ccEEEEcCCCcc-----cHHHHHHhccCCCCc
Q 023482          218 FAKVVANIPFNI-----STDVIKQLLPMGDIF  244 (281)
Q Consensus       218 ~d~Vi~n~P~~~-----~~~~~~~ll~~~~~~  244 (281)
                      +|.+......++     ....+.+.+++++.+
T Consensus       120 ~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  151 (257)
T COG0500         120 FDLVISLLVLHLLPPAKALRELLRVLKPGGRL  151 (257)
T ss_pred             eeEEeeeeehhcCCHHHHHHHHHHhcCCCcEE
Confidence            777744444322     223334556665554

>PHA01634 hypothetical protein

Probab=96.88  E-value=0.0026  Score=49.54  Aligned_cols=46  Identities=24%  Similarity=0.219  Sum_probs=41.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI  186 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~  186 (281)
                      .+++|+|||.+.|.+++.++..|+ +|+++|.++...+..+++.+.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence            578999999999999999999977 8999999999999999887643

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.84  E-value=0.024  Score=50.41  Aligned_cols=99  Identities=16%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHhcCCC--Ce-EEEEcCccccc------c-cc---
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--G--ATVLAIEKDQHMVGLVRERFASID--QL-KVLQEDFVKCH------I-RS---  203 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~--~~v~gvD~s~~~l~~a~~~~~~~~--~v-~~~~gD~~~~~------~-~d---  203 (281)
                      .+-+||||.||.|.........  .  .+|.-.|.++..++..++.++..+  ++ +|.++|+.+..      + ++   
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i  214 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI  214 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence            4569999999999988777664  2  489999999999999999988654  55 99999997742      1 01   


Q ss_pred             --chh------hHHHh-------hcCCCCccEEEEcCCCcccHHHHHHhccC
Q 023482          204 --HML------SLFER-------RKSSSGFAKVVANIPFNISTDVIKQLLPM  240 (281)
Q Consensus       204 --~~~------d~v~~-------~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~  240 (281)
                        +.|      +.+..       ...++ --+|+.|-|+|...+.+.+.|.+
T Consensus       215 VsGL~ElF~Dn~lv~~sl~gl~~al~pg-G~lIyTgQPwHPQle~IAr~Lts  265 (311)
T PF12147_consen  215 VSGLYELFPDNDLVRRSLAGLARALEPG-GYLIYTGQPWHPQLEMIARVLTS  265 (311)
T ss_pred             EecchhhCCcHHHHHHHHHHHHHHhCCC-cEEEEcCCCCCcchHHHHHHHhc
Confidence              111      22221       12222 35677788888777777777755

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.83  E-value=0.0025  Score=60.39  Aligned_cols=80  Identities=19%  Similarity=0.264  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhcC--CCC--CEEEEEcCCccHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHhcCCCCeEEE--EcCcc
Q 023482          127 SEINDQLAAAAAV--QEG--DIVLEIGPGTGSLTNVLLNAGATVLAI---EKDQHMVGLVRERFASIDQLKVL--QEDFV  197 (281)
Q Consensus       127 ~~~~~~l~~~l~~--~~~--~~VLDiGcG~G~~t~~la~~~~~v~gv---D~s~~~l~~a~~~~~~~~~v~~~--~gD~~  197 (281)
                      ..+++.+.+.+..  ..+  ..+||+|||+|.++..|.+++..+..+   |..+..++.|.++-     +-.+  ..-..
T Consensus        99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG-----vpa~~~~~~s~  173 (506)
T PF03141_consen   99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG-----VPAMIGVLGSQ  173 (506)
T ss_pred             HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC-----cchhhhhhccc
Confidence            4566677777765  333  368999999999999999997654444   44455666665541     1122  22245


Q ss_pred             ccccccchhhHHHh
Q 023482          198 KCHIRSHMLSLFER  211 (281)
Q Consensus       198 ~~~~~d~~~d~v~~  211 (281)
                      .+|+++++||.+-+
T Consensus       174 rLPfp~~~fDmvHc  187 (506)
T PF03141_consen  174 RLPFPSNAFDMVHC  187 (506)
T ss_pred             cccCCccchhhhhc
Confidence            78999999988744

; GO: 0008168 methyltransferase activity

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.83  E-value=0.0067  Score=51.69  Aligned_cols=58  Identities=17%  Similarity=0.151  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~  198 (281)
                      .+..+.||||--|++...|.+.+  ..+++.|+++..++.|.+++.+++   ++++..+|...
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~   78 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA   78 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc
Confidence            45569999999999999999874  489999999999999999998764   78888888854

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.80  E-value=0.0036  Score=53.00  Aligned_cols=74  Identities=19%  Similarity=0.336  Sum_probs=53.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++..|+|+|+..|..+..+++. +  ..|+|+|+.|-         +...+|.++++|+++-+..+   ++... ....
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~~~V~~iq~d~~~~~~~~---~l~~~-l~~~  110 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPIPGVIFLQGDITDEDTLE---KLLEA-LGGA  110 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccCCCceEEeeeccCccHHH---HHHHH-cCCC
Confidence            46789999999999999999987 2  35999999873         22247999999998865433   22222 2334


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|+|++++.
T Consensus       111 ~~DvV~sD~a  120 (205)
T COG0293         111 PVDVVLSDMA  120 (205)
T ss_pred             CcceEEecCC
Confidence            4799998753

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.79  E-value=0.0024  Score=59.35  Aligned_cols=57  Identities=33%  Similarity=0.473  Sum_probs=48.8

Q ss_pred             EEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccc
Q 023482          144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~  200 (281)
                      .|||||+|||.++...+..|+ .|+|+|.-+.|...|++...+++   +|+++.---.++.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~  129 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK  129 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence            689999999999988888766 89999999999999999888774   8888877665554

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.78  E-value=0.014  Score=50.06  Aligned_cols=99  Identities=12%  Similarity=0.140  Sum_probs=66.5

Q ss_pred             hcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482          137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      +.+.+|.+||-+|.++|.....++.-   .+.|+|||.++......-...++..||--+-+|+.. |..-.        .
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~-P~~Y~--------~  139 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARH-PEKYR--------M  139 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTS-GGGGT--------T
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCC-hHHhh--------c
Confidence            35668899999999999999999885   459999999997766665555555699999999975 21110        1


Q ss_pred             CCCCccEEEEcCCCcccHHHH----HHhccCCCCc
Q 023482          214 SSSGFAKVVANIPFNISTDVI----KQLLPMGDIF  244 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~~~~~~~----~~ll~~~~~~  244 (281)
                      --+..|+|+.+........++    +.+|+.+|.+
T Consensus       140 lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~  174 (229)
T PF01269_consen  140 LVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHL  174 (229)
T ss_dssp             TS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             ccccccEEEecCCChHHHHHHHHHHHhhccCCcEE
Confidence            125789999997754444443    3677887765

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.76  E-value=0.0033  Score=56.73  Aligned_cols=68  Identities=21%  Similarity=0.294  Sum_probs=54.2

Q ss_pred             EEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEE
Q 023482          144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi  222 (281)
                      +++|+.||.|.+...+.+.|. .+.++|+++.+.+.-+.|+.     .+..+|+.++...+         .+. .+|+++
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~---------l~~-~~D~l~   66 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSD---------LPK-DVDLLI   66 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHH---------HHH-T-SEEE
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----cccccccccccccc---------ccc-cceEEE
Confidence            689999999999999999885 78999999999999999886     78999999986431         111 489999


Q ss_pred             EcCC
Q 023482          223 ANIP  226 (281)
Q Consensus       223 ~n~P  226 (281)
                      +.||
T Consensus        67 ggpP   70 (335)
T PF00145_consen   67 GGPP   70 (335)
T ss_dssp             EE--
T ss_pred             eccC
Confidence            9887

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.71  E-value=0.012  Score=49.87  Aligned_cols=72  Identities=15%  Similarity=0.205  Sum_probs=42.2

Q ss_pred             CCCEEEEEcCCccH----HHHHHHHc-----C--CEEEEEeCCHHHHHHHHHHh-------------------cC-C---
Q 023482          141 EGDIVLEIGPGTGS----LTNVLLNA-----G--ATVLAIEKDQHMVGLVRERF-------------------AS-I---  186 (281)
Q Consensus       141 ~~~~VLDiGcG~G~----~t~~la~~-----~--~~v~gvD~s~~~l~~a~~~~-------------------~~-~---  186 (281)
                      ..-+|+..||++|.    +++.+.+.     +  .+|+|.|+|+.+++.|++-.                   .. .   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            34589999999997    33444441     2  49999999999999997421                   00 0   


Q ss_pred             -------CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEc
Q 023482          187 -------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (281)
Q Consensus       187 -------~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n  224 (281)
                             .+|+|.+.|..+.+            ...+.||+|++.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~------------~~~~~fD~I~CR  143 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPD------------PPFGRFDLIFCR  143 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------------------EEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCC------------cccCCccEEEec
Confidence                   26888888887721            334789999994

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.69  E-value=0.015  Score=49.53  Aligned_cols=105  Identities=18%  Similarity=0.226  Sum_probs=73.7

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchh
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~  206 (281)
                      +...+.+.+. .+|.+||+||.|.|.....+.+.. .+-+-||.+++.++..+..--.. .||.++.|-..+.-..    
T Consensus        90 iMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~----  164 (271)
T KOG1709|consen   90 IMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT----  164 (271)
T ss_pred             HHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc----
Confidence            3344444444 467899999999999999998873 36688999999999988775433 4999999987764211    


Q ss_pred             hHHHhhcCCCCccEEEEcC--CCcc----cHHHHHHhccCCCCc
Q 023482          207 SLFERRKSSSGFAKVVANI--PFNI----STDVIKQLLPMGDIF  244 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~--P~~~----~~~~~~~ll~~~~~~  244 (281)
                            ...+.||.|+-+.  |+..    ....+.+|+++++.+
T Consensus       165 ------L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~  202 (271)
T KOG1709|consen  165 ------LPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVF  202 (271)
T ss_pred             ------ccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceE
Confidence                  3346699998752  3322    113445888888876

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.65  E-value=0.0046  Score=58.37  Aligned_cols=103  Identities=15%  Similarity=0.270  Sum_probs=80.2

Q ss_pred             EEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHh-cCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEE
Q 023482          144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~-~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~V  221 (281)
                      ++|.+|||.-.+...+.+.|. .|+.+|+|+..++...... ......++...|+..+.|+|.+||.+   ...+.+|..
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiV---IdkGtlDal  127 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIV---IDKGTLDAL  127 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEE---EecCccccc
Confidence            899999999999999888875 8999999999999887665 33358899999999999999999988   667888888


Q ss_pred             EEcCCCcc-------cHHHHHHhccCCCCcceEEE
Q 023482          222 VANIPFNI-------STDVIKQLLPMGDIFSEVVL  249 (281)
Q Consensus       222 i~n~P~~~-------~~~~~~~ll~~~~~~~~~~~  249 (281)
                      +..-+--+       ....+.+++++++.+..+.+
T Consensus       128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            87643222       11333466777777655554

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.57  E-value=0.0087  Score=50.77  Aligned_cols=92  Identities=13%  Similarity=0.145  Sum_probs=51.3

Q ss_pred             HHHHHHHHhcCCC-CCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482          129 INDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       129 ~~~~l~~~l~~~~-~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      =++.+++++.-.+ ...|.|+|||.+.++..+. .+.+|...|+-..             |-.++.+|+..+|+++    
T Consensus        59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~-------------n~~Vtacdia~vPL~~----  120 (219)
T PF05148_consen   59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP-------------NPRVTACDIANVPLED----  120 (219)
T ss_dssp             HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S-------------STTEEES-TTS-S--T----
T ss_pred             cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC-------------CCCEEEecCccCcCCC----
Confidence            3566677776444 4589999999999986653 3468999998642             2247889999999765    


Q ss_pred             HHHhhcCCCCccEEEEcCCC--cccHHH---HHHhccCCCCcce
Q 023482          208 LFERRKSSSGFAKVVANIPF--NISTDV---IKQLLPMGDIFSE  246 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~--~~~~~~---~~~ll~~~~~~~~  246 (281)
                              +..|++|..+-.  ....++   ..++|+++|.+..
T Consensus       121 --------~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~I  156 (219)
T PF05148_consen  121 --------ESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKI  156 (219)
T ss_dssp             --------T-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEE
T ss_pred             --------CceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEE
Confidence                    667888876544  222233   3488888776643

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=96.51  E-value=0.0019  Score=59.86  Aligned_cols=61  Identities=13%  Similarity=0.261  Sum_probs=54.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCcccc
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKC  199 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~~~  199 (281)
                      .++|..|.|+.||.|-+++.++..++.|++-|.+++++++.+.+++-+.    +++++..|+.++
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F  311 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF  311 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence            3478899999999999999999999999999999999999999987652    699999998764

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.48  E-value=0.01  Score=54.19  Aligned_cols=76  Identities=20%  Similarity=0.284  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHh--cC-------CCCeEEEEcCccccccccchhhHH
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERF--AS-------IDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~--~~-------~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      ...+||-+|-|.|.-++.+.+.  -.+|+-||.||+|++.++.+.  ..       .++++++..|+..+--        
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr--------  360 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR--------  360 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH--------
Confidence            4568999999999999999987  349999999999999998442  11       1389999999876421        


Q ss_pred             HhhcCCCCccEEEEcCCC
Q 023482          210 ERRKSSSGFAKVVANIPF  227 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~  227 (281)
                         ...+.||.||.++|-
T Consensus       361 ---~a~~~fD~vIVDl~D  375 (508)
T COG4262         361 ---TAADMFDVVIVDLPD  375 (508)
T ss_pred             ---hhcccccEEEEeCCC
Confidence               334689999998763

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.46  E-value=0.0084  Score=52.21  Aligned_cols=60  Identities=25%  Similarity=0.330  Sum_probs=45.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCH  200 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~  200 (281)
                      .+.+|+|||||.=-++......  +..++|.|+|..+++....-....+ +.++...|...-+
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~  167 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP  167 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC
Confidence            4679999999999988876655  5699999999999999988776554 7788888877653

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=96.36  E-value=0.023  Score=55.05  Aligned_cols=98  Identities=21%  Similarity=0.335  Sum_probs=68.9

Q ss_pred             cccCCHHHHHHHHHHhcCC--CCCEEEEEcCCccHHHHHHHHc---C---CEEEEEeCCHHHHHHHHHHhcCC----CCe
Q 023482          122 HYMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNA---G---ATVLAIEKDQHMVGLVRERFASI----DQL  189 (281)
Q Consensus       122 ~~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~---~---~~v~gvD~s~~~l~~a~~~~~~~----~~v  189 (281)
                      .+++++.++..+.+.+.+.  ++..|.|..||+|.+.......   +   ..++|.|....+...++.+..-.    +..
T Consensus       196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~  275 (501)
T TIGR00497       196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANF  275 (501)
T ss_pred             eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcccc
Confidence            3889999999988877654  4568999999999988754431   2   36999999999999999874311    133


Q ss_pred             EEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       190 ~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      ....+|-..-+      |.+    ....||.|++||||..
T Consensus       276 ~~~~~dtl~~~------d~~----~~~~~D~v~~NpPf~~  305 (501)
T TIGR00497       276 NIINADTLTTK------EWE----NENGFEVVVSNPPYSI  305 (501)
T ss_pred             CcccCCcCCCc------ccc----ccccCCEEeecCCccc
Confidence            44455544322      221    2246899999999964

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.31  E-value=0.0089  Score=50.76  Aligned_cols=57  Identities=19%  Similarity=0.184  Sum_probs=39.1

Q ss_pred             HHHHHHHHHh----cCCCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhc
Q 023482          128 EINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       128 ~~~~~l~~~l----~~~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      +++..+.+..    .-..+-++.|.+||.|++.-.+.-.    -..|+|-|+|+++++.|++|+.
T Consensus        34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            4444444443    2234458999999999988777653    2489999999999999998764

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.24  E-value=0.016  Score=50.55  Aligned_cols=89  Identities=10%  Similarity=0.126  Sum_probs=59.4

Q ss_pred             HHHHHHHhcCCCC-CEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhH
Q 023482          130 NDQLAAAAAVQEG-DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       130 ~~~l~~~l~~~~~-~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      ++.++..+...++ ..|.|+|||.+-++.   ..-.+|+.+|+.+             -|-+++.+|+.++|++|     
T Consensus       168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-------------~~~~V~~cDm~~vPl~d-----  226 (325)
T KOG3045|consen  168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA-------------VNERVIACDMRNVPLED-----  226 (325)
T ss_pred             HHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec-------------CCCceeeccccCCcCcc-----
Confidence            5566666655444 578999999998775   2245788888742             14468999999999876     


Q ss_pred             HHhhcCCCCccEEEEcCCC-----cccHHHHHHhccCCCCcce
Q 023482          209 FERRKSSSGFAKVVANIPF-----NISTDVIKQLLPMGDIFSE  246 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~-----~~~~~~~~~ll~~~~~~~~  246 (281)
                             .+.|++|..+-.     ........++|++||.+..
T Consensus       227 -------~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~I  262 (325)
T KOG3045|consen  227 -------ESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYI  262 (325)
T ss_pred             -------CcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEE
Confidence                   556666654433     1122333588999887643

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=96.20  E-value=0.011  Score=53.84  Aligned_cols=68  Identities=22%  Similarity=0.277  Sum_probs=54.2

Q ss_pred             EEEEcCCccHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEE
Q 023482          145 VLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA  223 (281)
Q Consensus       145 VLDiGcG~G~~t~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~  223 (281)
                      |+|+.||.|.+..-+.+.|.+ +.++|+++.+.+..+.|+..    .++++|+.++...+           ...+|++++
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~----~~~~~Di~~~~~~~-----------~~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN----KVPFGDITKISPSD-----------IPDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC----CCCccChhhhhhhh-----------CCCcCEEEe
Confidence            689999999999999888876 56799999999999988763    56678988875422           235799999


Q ss_pred             cCCC
Q 023482          224 NIPF  227 (281)
Q Consensus       224 n~P~  227 (281)
                      .+|=
T Consensus        66 g~PC   69 (315)
T TIGR00675        66 GFPC   69 (315)
T ss_pred             cCCC
Confidence            8773

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.19  E-value=0.008  Score=50.99  Aligned_cols=124  Identities=14%  Similarity=0.093  Sum_probs=60.3

Q ss_pred             CCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc------CCEEEEEeCCHHHHHH-HHHHhcCCC
Q 023482          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGL-VRERFASID  187 (281)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~------~~~v~gvD~s~~~l~~-a~~~~~~~~  187 (281)
                      ...|+|...+..|.-...+-+.+--.+++.|+|+|.-.|.++..+|..      .++|+|||++-..... +.+..+-.+
T Consensus         6 ~~~w~G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~   85 (206)
T PF04989_consen    6 NFSWLGRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSP   85 (206)
T ss_dssp             -EEETTEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----T
T ss_pred             cccCCCeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccC
Confidence            345677755555554444444443335789999999999999888763      3699999997544432 222222235


Q ss_pred             CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC--CCcccHHHH---HHhccCCC
Q 023482          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI--PFNISTDVI---KQLLPMGD  242 (281)
Q Consensus       188 ~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~--P~~~~~~~~---~~ll~~~~  242 (281)
                      +|++++||..+....+.    +...........||-+-  -+......+   ..++.+|+
T Consensus        86 rI~~i~Gds~d~~~~~~----v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~  141 (206)
T PF04989_consen   86 RITFIQGDSIDPEIVDQ----VRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGS  141 (206)
T ss_dssp             TEEEEES-SSSTHHHHT----SGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-
T ss_pred             ceEEEECCCCCHHHHHH----HHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCC
Confidence            99999999877542221    11112234566777643  333333333   35555543

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.10  E-value=0.019  Score=53.29  Aligned_cols=86  Identities=14%  Similarity=0.217  Sum_probs=67.9

Q ss_pred             HHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhh
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ....+.++++.+|||..+..|.=|..+|..   .+.|+|.|.+...+...+.++.+.+  |..+.+.|..++|-.     
T Consensus       233 pv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~-----  307 (460)
T KOG1122|consen  233 PVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEK-----  307 (460)
T ss_pred             eeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccc-----
Confidence            334457889999999999999988888875   4589999999999999999998776  778888898876532     


Q ss_pred             HHHhhcCCCCccEEEEcCCCc
Q 023482          208 LFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                           .-+++||.|..+-|=.
T Consensus       308 -----~~~~~fDRVLLDAPCS  323 (460)
T KOG1122|consen  308 -----EFPGSFDRVLLDAPCS  323 (460)
T ss_pred             -----ccCcccceeeecCCCC
Confidence                 1224788888776643

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.94  E-value=0.099  Score=46.52  Aligned_cols=85  Identities=24%  Similarity=0.294  Sum_probs=48.2

Q ss_pred             CCEEEEEcCCccHHH-HHHHHc---CCEEEEEeCCHHHHHHHHHHhcC-C---CCeEEEEcCccccccccchhhHHHhhc
Q 023482          142 GDIVLEIGPGTGSLT-NVLLNA---GATVLAIEKDQHMVGLVRERFAS-I---DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t-~~la~~---~~~v~gvD~s~~~l~~a~~~~~~-~---~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      +.+|+=||||.=-+| +.+++.   +..|+++|+|+++++.+++.... .   .+++|+.+|+.+.+.            
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~------------  188 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY------------  188 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G------------
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc------------
Confidence            359999999965555 445543   46899999999999999887762 2   389999999987652            


Q ss_pred             CCCCccEEEEcCCCc----ccHHHHHHhc
Q 023482          214 SSSGFAKVVANIPFN----ISTDVIKQLL  238 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~----~~~~~~~~ll  238 (281)
                      ....||+|+-..--.    .-..++.++.
T Consensus       189 dl~~~DvV~lAalVg~~~e~K~~Il~~l~  217 (276)
T PF03059_consen  189 DLKEYDVVFLAALVGMDAEPKEEILEHLA  217 (276)
T ss_dssp             G----SEEEE-TT-S----SHHHHHHHHH
T ss_pred             ccccCCEEEEhhhcccccchHHHHHHHHH
Confidence            225688877654333    3335555554

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK10458 DNA cytosine methylase; Provisional

Probab=95.83  E-value=0.083  Score=50.55  Aligned_cols=86  Identities=14%  Similarity=0.168  Sum_probs=60.0

Q ss_pred             CEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccch----hhHHHhh-cCCC
Q 023482          143 DIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM----LSLFERR-KSSS  216 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~----~d~v~~~-~~~~  216 (281)
                      -+++|+.||.|.+...+-..|. .|.++|+++.+.+.-+.|+...+...++.+|+.++...+..    .+....+ ...+
T Consensus        89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p  168 (467)
T PRK10458         89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIP  168 (467)
T ss_pred             ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCC
Confidence            4899999999999999988876 67899999999998888874333556677888887643211    0011000 1123


Q ss_pred             CccEEEEcCCCc
Q 023482          217 GFAKVVANIPFN  228 (281)
Q Consensus       217 ~~d~Vi~n~P~~  228 (281)
                      ..|++++.+|=+
T Consensus       169 ~~DvL~gGpPCQ  180 (467)
T PRK10458        169 DHDVLLAGFPCQ  180 (467)
T ss_pred             CCCEEEEcCCCC
Confidence            579999988744

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.63  E-value=0.043  Score=50.16  Aligned_cols=77  Identities=19%  Similarity=0.198  Sum_probs=59.4

Q ss_pred             CEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEE
Q 023482          143 DIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~V  221 (281)
                      .+++|+.||.|.+..-+...|. -+.++|+++.+++.-+.|++.   -.++++|+.++....         .....+|++
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~---~~~~~~di~~~~~~~---------~~~~~~Dvl   71 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH---GDIILGDIKELDGEA---------LRKSDVDVL   71 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC---CceeechHhhcChhh---------ccccCCCEE
Confidence            4799999999999999988886 688999999999999988863   467778887765321         111168999


Q ss_pred             EEcCCCcccH
Q 023482          222 VANIPFNIST  231 (281)
Q Consensus       222 i~n~P~~~~~  231 (281)
                      ++.||=+-.+
T Consensus        72 igGpPCQ~FS   81 (328)
T COG0270          72 IGGPPCQDFS   81 (328)
T ss_pred             EeCCCCcchh
Confidence            9998854333

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=95.44  E-value=0.033  Score=50.02  Aligned_cols=81  Identities=19%  Similarity=0.233  Sum_probs=54.7

Q ss_pred             EEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       146 LDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      +|||+|+-.+-..+-..  +...+++|+++..+..|+.++..++   .+++++-...+.-+.    |.+.+ ....-||.
T Consensus       107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~----d~~~~-~~e~~ydF  181 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLM----DALKE-ESEIIYDF  181 (419)
T ss_pred             eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcch----hhhcc-CccceeeE
Confidence            78887765544444332  5689999999999999999998764   677777655433222    22211 22345899


Q ss_pred             EEEcCCCcccH
Q 023482          221 VVANIPFNIST  231 (281)
Q Consensus       221 Vi~n~P~~~~~  231 (281)
                      +-+||||....
T Consensus       182 cMcNPPFfe~~  192 (419)
T KOG2912|consen  182 CMCNPPFFENQ  192 (419)
T ss_pred             EecCCchhhch
Confidence            99999997653

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.39  E-value=0.13  Score=47.14  Aligned_cols=98  Identities=20%  Similarity=0.233  Sum_probs=64.3

Q ss_pred             hcCCCCCEEEEEcCC-ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          137 AAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       137 l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+..++++|+=+|+| .|.++..+|+. +++|+++|++++-.+.|++.-.    -.++... ..-..+          .-
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA----d~~i~~~-~~~~~~----------~~  226 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA----DHVINSS-DSDALE----------AV  226 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC----cEEEEcC-CchhhH----------Hh
Confidence            456789999888887 44577888884 8999999999999999987633    2334432 111100          11


Q ss_pred             CCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEe
Q 023482          215 SSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLL  250 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~  250 (281)
                      .+.+|+|+...+ ....+..-++++.++.+...-+.
T Consensus       227 ~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         227 KEIADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             HhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence            123888888777 55555556677777766444433

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=95.32  E-value=0.055  Score=47.74  Aligned_cols=74  Identities=18%  Similarity=0.222  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHhcCCCC-CEEEEEcCCccH--HHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCC--eEEEEcCcc
Q 023482          126 NSEINDQLAAAAAVQEG-DIVLEIGPGTGS--LTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFV  197 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~-~~VLDiGcG~G~--~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--v~~~~gD~~  197 (281)
                      ++.++.+.+..+.-..| ...||||||.-.  .+-.+++.   .++|+=||.+|-.+..++..+...++  ..++++|+.
T Consensus        52 nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r  131 (267)
T PF04672_consen   52 NRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLR  131 (267)
T ss_dssp             HHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT
T ss_pred             HHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCC
Confidence            34455566666554423 589999999553  45556654   67999999999999999998887666  899999998


Q ss_pred             cc
Q 023482          198 KC  199 (281)
Q Consensus       198 ~~  199 (281)
                      +.
T Consensus       132 ~p  133 (267)
T PF04672_consen  132 DP  133 (267)
T ss_dssp             -H
T ss_pred             CH
Confidence            74

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=95.27  E-value=0.012  Score=54.44  Aligned_cols=72  Identities=17%  Similarity=0.218  Sum_probs=57.3

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHH
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      ...++..++|+|||.|.....++.. +++++|++.++.-+..+.......   .+..++.+|+.+.|++|+.||.+
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v  182 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGV  182 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcE
Confidence            3446668999999999999999987 579999999998887776554332   24455999999999998777664

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.06  E-value=0.19  Score=42.45  Aligned_cols=96  Identities=16%  Similarity=0.246  Sum_probs=69.5

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+.++.+||=+|..+|.....++.- + +.++|||+++......-....+..|+--+.+|+..-. .  --.++      
T Consensus        73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~-~--Y~~~V------  143 (231)
T COG1889          73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPE-K--YRHLV------  143 (231)
T ss_pred             CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcH-H--hhhhc------
Confidence            5678999999999999999999886 3 5899999999988877766666678888999986521 0  00111      


Q ss_pred             CCccEEEEcCCCcccHHHH----HHhccCCC
Q 023482          216 SGFAKVVANIPFNISTDVI----KQLLPMGD  242 (281)
Q Consensus       216 ~~~d~Vi~n~P~~~~~~~~----~~ll~~~~  242 (281)
                      +..|+|+.+...-....++    +.+++.+|
T Consensus       144 e~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G  174 (231)
T COG1889         144 EKVDVIYQDVAQPNQAEILADNAEFFLKKGG  174 (231)
T ss_pred             ccccEEEEecCCchHHHHHHHHHHHhcccCC
Confidence            4578898887654444444    24555555

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=94.99  E-value=0.011  Score=50.07  Aligned_cols=74  Identities=18%  Similarity=0.197  Sum_probs=55.8

Q ss_pred             HhcCCCCCcccCccccCCHHHHHHHHHHhcCC---CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Q 023482          109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER  182 (281)
Q Consensus       109 ~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~---~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~  182 (281)
                      .+..+..-..+|..|+..++--.+++..-++.   .+.++||+|+|.|.++..|+..-.+|++.|.|..|..+.++.
T Consensus        77 s~TdING~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen   77 SQTDINGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK  153 (288)
T ss_pred             hhhccccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence            33345555556677887777666666554332   346899999999999999998867899999999999888764

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=94.90  E-value=0.013  Score=43.98  Aligned_cols=70  Identities=17%  Similarity=0.165  Sum_probs=24.1

Q ss_pred             EEEcCCccHHHHHHHHc---C--CEEEEEeCCHH---HHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          146 LEIGPGTGSLTNVLLNA---G--ATVLAIEKDQH---MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       146 LDiGcG~G~~t~~la~~---~--~~v~gvD~s~~---~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ||||+..|.++..+++.   .  .+++++|..+.   .-+..++ ..-.++++++++|..+.- +.         ...++
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l-~~---------~~~~~   69 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFL-PS---------LPDGP   69 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHH-HH---------HHH--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHH-HH---------cCCCC
Confidence            69999999999998874   2  37999999995   3333332 111248999999986641 10         11368


Q ss_pred             ccEEEEcCC
Q 023482          218 FAKVVANIP  226 (281)
Q Consensus       218 ~d~Vi~n~P  226 (281)
                      +|+|+.+-.
T Consensus        70 ~dli~iDg~   78 (106)
T PF13578_consen   70 IDLIFIDGD   78 (106)
T ss_dssp             EEEEEEES-
T ss_pred             EEEEEECCC
Confidence            899998754

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=94.87  E-value=0.028  Score=50.08  Aligned_cols=59  Identities=25%  Similarity=0.399  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCccHHHH-HHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccc
Q 023482          141 EGDIVLEIGPGTGSLTN-VLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~-~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~  199 (281)
                      .+..|.|+-+|.||+|. .+...|+ .|+++|.+|..++..+.+.+.++   ...+++||-...
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~  257 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP  257 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc
Confidence            35789999999999999 6666665 89999999999999999887663   566777776654

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=94.75  E-value=0.12  Score=40.40  Aligned_cols=74  Identities=14%  Similarity=0.291  Sum_probs=43.1

Q ss_pred             CCEEEEEcCCccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          142 GDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       142 ~~~VLDiGcG~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      ..+|.|+|-|.=. .+..|.+.|..|+++|+++.   .+.      ..+.++..|+.+-.+     ++      ....|+
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~------~g~~~v~DDif~P~l-----~i------Y~~a~l   73 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP------EGVNFVVDDIFNPNL-----EI------YEGADL   73 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------------STTEE---SSS--H-----HH------HTTEEE
T ss_pred             CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc------cCcceeeecccCCCH-----HH------hcCCcE
Confidence            3499999988654 55666667999999999998   111      266789999887322     11      246799


Q ss_pred             EEE-cCCCcccHHHHH
Q 023482          221 VVA-NIPFNISTDVIK  235 (281)
Q Consensus       221 Vi~-n~P~~~~~~~~~  235 (281)
                      |.| +||.....++++
T Consensus        74 IYSiRPP~El~~~il~   89 (127)
T PF03686_consen   74 IYSIRPPPELQPPILE   89 (127)
T ss_dssp             EEEES--TTSHHHHHH
T ss_pred             EEEeCCChHHhHHHHH
Confidence            999 788888777765

; PDB: 2K4M_A.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=94.61  E-value=0.12  Score=47.48  Aligned_cols=90  Identities=23%  Similarity=0.263  Sum_probs=65.0

Q ss_pred             HHhcCCCCCEEEEEcCCccHHHHHHHHcCC------EEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchh
Q 023482          135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGA------TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~G~~t~~la~~~~------~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~  206 (281)
                      -.++++++++|||+++..|.-|+.|.+...      .|++=|+++..+...........  ++.+...|+...|-..-. 
T Consensus       149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~-  227 (375)
T KOG2198|consen  149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK-  227 (375)
T ss_pred             hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc-
Confidence            345778999999999999999999988632      89999999999998887775443  677777777665532100 


Q ss_pred             hHHHhhcCCCCccEEEEcCCC
Q 023482          207 SLFERRKSSSGFAKVVANIPF  227 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~  227 (281)
                      |+-+  .....||.|+.+.|=
T Consensus       228 ~~~~--~~~~~fDrVLvDVPC  246 (375)
T KOG2198|consen  228 DGND--KEQLKFDRVLVDVPC  246 (375)
T ss_pred             cCch--hhhhhcceeEEeccc
Confidence            0000  133579999998774

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=94.60  E-value=0.16  Score=44.57  Aligned_cols=44  Identities=23%  Similarity=0.304  Sum_probs=35.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHc----------CCEEEEEeCCHHHHHHHHHHhcC
Q 023482          142 GDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVRERFAS  185 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~----------~~~v~gvD~s~~~l~~a~~~~~~  185 (281)
                      +-+|+|+|+|+|.++..++..          ..+++-||+|+.+.+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            468999999999999998763          24899999999999988888865

; PDB: 4F3N_A 1ZKD_B.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.47  E-value=0.048  Score=41.27  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=28.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD  172 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s  172 (281)
                      +...-.|||||.|.+.-.|.+.|.+=.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence            44579999999999999999999889999974

; GO: 0008168 methyltransferase activity

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=94.45  E-value=0.039  Score=46.57  Aligned_cols=57  Identities=25%  Similarity=0.370  Sum_probs=44.7

Q ss_pred             CEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---------CCeEEEEcCcccc
Q 023482          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---------DQLKVLQEDFVKC  199 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---------~~v~~~~gD~~~~  199 (281)
                      ..+.|||||.|.++..|+..  ..-+.|.||--..-+..+.++...         .|+.+++.++...
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~  129 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF  129 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence            46899999999999999987  568999999877777666665421         3788888887654

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=94.43  E-value=0.14  Score=47.23  Aligned_cols=41  Identities=34%  Similarity=0.487  Sum_probs=35.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~  181 (281)
                      +-+.|+|+|.|.|+++..|+-. +..|+|||-|....+.|+.
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            4478999999999999999876 7799999999888777753

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=94.30  E-value=0.23  Score=45.56  Aligned_cols=65  Identities=17%  Similarity=0.284  Sum_probs=47.8

Q ss_pred             cccCCHHHHHH--------HHHHh---cCCCCCEEEEEcCCccHHHHHHHHc----------CCEEEEEeCCHHHHHHHH
Q 023482          122 HYMLNSEINDQ--------LAAAA---AVQEGDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVR  180 (281)
Q Consensus       122 ~~~~~~~~~~~--------l~~~l---~~~~~~~VLDiGcG~G~~t~~la~~----------~~~v~gvD~s~~~l~~a~  180 (281)
                      .|++.+++...        +++..   ....+-.++|||.|.|.+...++..          ..++.-||+|++..+.-+
T Consensus        47 DFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk  126 (370)
T COG1565          47 DFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK  126 (370)
T ss_pred             CeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence            58888776433        22222   3333458999999999999888652          358999999999999888


Q ss_pred             HHhcCC
Q 023482          181 ERFASI  186 (281)
Q Consensus       181 ~~~~~~  186 (281)
                      ++++..
T Consensus       127 ~~L~~~  132 (370)
T COG1565         127 ETLKAT  132 (370)
T ss_pred             HHHhcc
Confidence            888743

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=94.02  E-value=0.14  Score=46.72  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=47.1

Q ss_pred             CEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 023482          143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~  199 (281)
                      ...+|+|.|+|..+..+...-.+|-+++.+...+-.++..+.  ..|+.+-||...-
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~  233 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQD  233 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceeccccccc
Confidence            689999999999999999865689999999999988888874  2488888997663

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.02  E-value=0.34  Score=44.55  Aligned_cols=99  Identities=16%  Similarity=0.124  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCC-C-CeEEEEcCcccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKCHIRS  203 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~-~-~v~~~~gD~~~~~~~d  203 (281)
                      ++.-..++.+.-.-+.+|||.=+|+|.=++..+.. +. +|+.=|+||.+++.+++|+..+ + +..+++.|+..+-.. 
T Consensus        39 DlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~-  117 (380)
T COG1867          39 DLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE-  117 (380)
T ss_pred             chhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh-
Confidence            34444444443222679999999999999999876 44 8999999999999999999876 3 777777888765321 


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL  238 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll  238 (281)
                                ....||+|=. =||....|++..-+
T Consensus       118 ----------~~~~fd~IDi-DPFGSPaPFlDaA~  141 (380)
T COG1867         118 ----------LHRAFDVIDI-DPFGSPAPFLDAAL  141 (380)
T ss_pred             ----------cCCCccEEec-CCCCCCchHHHHHH
Confidence                      2256776543 47777777776433

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=93.96  E-value=0.15  Score=44.19  Aligned_cols=100  Identities=14%  Similarity=0.129  Sum_probs=66.0

Q ss_pred             HhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      .+.++++.+||=+|+++|+.-.....-   ..-|++||.++..=..+-.-.++..||--+.-|+..-.- -      .  
T Consensus       151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~K-Y------R--  221 (317)
T KOG1596|consen  151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAK-Y------R--  221 (317)
T ss_pred             ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchh-e------e--
Confidence            345779999999999999988888775   347999999865544433333333577777778764210 0      0  


Q ss_pred             cCCCCccEEEEcCCCcccHHHH----HHhccCCCCc
Q 023482          213 KSSSGFAKVVANIPFNISTDVI----KQLLPMGDIF  244 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~~~~~----~~ll~~~~~~  244 (281)
                      ..-+..|+||++.+..-...++    ..+|++++.|
T Consensus       222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhf  257 (317)
T KOG1596|consen  222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHF  257 (317)
T ss_pred             eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeE
Confidence            1114679999987654333333    3777888876

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=93.69  E-value=0.17  Score=42.44  Aligned_cols=84  Identities=12%  Similarity=0.130  Sum_probs=61.0

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc----C--CEEEEEeCCHHHHHHHHHHhcCCC
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASID  187 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~  187 (281)
                      .-..|.|...+..+.-.-.+-+.+-..+++.|+|+|.-.|.+++..|..    |  .+|+++|+|-.-+..+...   .+
T Consensus        42 ~~~twmG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p  118 (237)
T COG3510          42 YNYTWMGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VP  118 (237)
T ss_pred             EEeeEecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CC
Confidence            4456778776666665555555554456789999999999999888874    5  6999999986655444333   34


Q ss_pred             CeEEEEcCccccc
Q 023482          188 QLKVLQEDFVKCH  200 (281)
Q Consensus       188 ~v~~~~gD~~~~~  200 (281)
                      .|.+++|+-.+..
T Consensus       119 ~i~f~egss~dpa  131 (237)
T COG3510         119 DILFIEGSSTDPA  131 (237)
T ss_pred             CeEEEeCCCCCHH
Confidence            8999999987753

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=93.31  E-value=0.18  Score=44.64  Aligned_cols=120  Identities=10%  Similarity=0.194  Sum_probs=78.1

Q ss_pred             cHHHHHHHHHhc---CCCCCcccCccccCCHHHHHHHHHHh--cCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCC
Q 023482          100 DYHATIKALNSK---GRFPRKSLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKD  172 (281)
Q Consensus       100 ~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s  172 (281)
                      .+.+++..+.+.   ...+...+.|.|.++.-.+.++.-..  +--.|+.|+=+| -.-..+++++-.  ..+|..||++
T Consensus       106 ~f~dll~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDID  184 (354)
T COG1568         106 AFKDLLEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDID  184 (354)
T ss_pred             hHHHHHHHHHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEech
Confidence            345555544433   23344566777777766555443332  122567899998 433444444444  4599999999


Q ss_pred             HHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          173 QHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       173 ~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                      +..+....+..++.+  |++.+.-|..+ |+++   |      -...||+++.+||+...
T Consensus       185 ERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe---~------~~~kFDvfiTDPpeTi~  234 (354)
T COG1568         185 ERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPE---D------LKRKFDVFITDPPETIK  234 (354)
T ss_pred             HHHHHHHHHHHHHhCccchhheeehhcc-cChH---H------HHhhCCeeecCchhhHH
Confidence            999999988777654  68888888876 3433   1      23689999999997643

>PRK12829 short chain dehydrogenase; Provisional

Probab=93.14  E-value=0.82  Score=39.51  Aligned_cols=83  Identities=16%  Similarity=0.190  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++++|=.|++ |.++..+++    +|.+|++++.+++..+...+..... ++.++.+|+.+..-....++.+.  ...
T Consensus         9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~--~~~   84 (264)
T PRK12829          9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAV--ERF   84 (264)
T ss_pred             cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHH--HHh
Confidence            367899988875 555555544    4889999999988776655544332 67889999887542222222221  122


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +.+|+||.+..
T Consensus        85 ~~~d~vi~~ag   95 (264)
T PRK12829         85 GGLDVLVNNAG   95 (264)
T ss_pred             CCCCEEEECCC
Confidence            56899998653

>PRK08339 short chain dehydrogenase; Provisional

Probab=92.96  E-value=0.73  Score=40.31  Aligned_cols=82  Identities=17%  Similarity=0.239  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++-++.+.+.+...  .++.++.+|+.+..-.+..++.+   ...
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~---~~~   83 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKEL---KNI   83 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHH---Hhh
Confidence            46788888876554   44455556899999999988777666655432  37889999988754333333332   223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        84 g~iD~lv~na   93 (263)
T PRK08339         84 GEPDIFFFST   93 (263)
T ss_pred             CCCcEEEECC
Confidence            5689888774

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=92.88  E-value=0.46  Score=42.32  Aligned_cols=61  Identities=23%  Similarity=0.253  Sum_probs=51.8

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI  186 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~  186 (281)
                      .+..+..+++.. ...+++.|||.-+|+|..+.+....+-+.+|+|++++.++.+.+++...
T Consensus       207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence            344667777776 6678899999999999998888888999999999999999999988743

>PRK05867 short chain dehydrogenase; Provisional

Probab=92.84  E-value=0.68  Score=39.98  Aligned_cols=83  Identities=18%  Similarity=0.230  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|.+|+.++.+++.++.....+... +++.++.+|+.+..-....++.+.  ...+
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g   85 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVT--AELG   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence            46789999976553   34444556889999999988877766665433 367888899876432222222221  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        86 ~id~lv~~a   94 (253)
T PRK05867         86 GIDIAVCNA   94 (253)
T ss_pred             CCCEEEECC
Confidence            789999875

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=92.78  E-value=0.1  Score=46.24  Aligned_cols=62  Identities=18%  Similarity=0.241  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhH
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      .+..++|+|||.|-.+..=  -...++|.|++...+..++..-    ...+..+|+.++|+.+.+||.
T Consensus        45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~----~~~~~~ad~l~~p~~~~s~d~  106 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSG----GDNVCRADALKLPFREESFDA  106 (293)
T ss_pred             CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccCC----CceeehhhhhcCCCCCCcccc
Confidence            4778999999999765321  2347999999999888776532    226899999999987654443

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=92.72  E-value=0.17  Score=42.21  Aligned_cols=74  Identities=19%  Similarity=0.313  Sum_probs=47.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEc-CccccccccchhhHHHhhcCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQE-DFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~g-D~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|||+||..|..+....+.   .+.|.|||+-.         +..-..++++.+ |+.+-...   -.+.+. .+.
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~---~ki~e~-lp~  134 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETY---RKIFEA-LPN  134 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHH---HHHHHh-CCC
Confidence            37899999999999999888776   45899999842         222235566666 55442111   111111 344


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      -..|+|++++.
T Consensus       135 r~VdvVlSDMa  145 (232)
T KOG4589|consen  135 RPVDVVLSDMA  145 (232)
T ss_pred             CcccEEEeccC
Confidence            66788888754

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=92.69  E-value=0.71  Score=40.08  Aligned_cols=80  Identities=15%  Similarity=0.174  Sum_probs=51.1

Q ss_pred             EEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       144 ~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      +||=.|.+.|.   ++..+++.|++|+.++.+++.++.+.+.+...+++.++.+|+.+.......++.+.  ...+..|+
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~--~~~g~id~   79 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW--ELLGGIDA   79 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH--HhcCCCCE
Confidence            46667765443   33444556889999999998887776666544578888999876432222222221  22356899


Q ss_pred             EEEcC
Q 023482          221 VVANI  225 (281)
Q Consensus       221 Vi~n~  225 (281)
                      +|.|.
T Consensus        80 li~na   84 (259)
T PRK08340         80 LVWNA   84 (259)
T ss_pred             EEECC
Confidence            98874

>PRK06172 short chain dehydrogenase; Provisional

Probab=92.68  E-value=0.79  Score=39.47  Aligned_cols=82  Identities=11%  Similarity=0.099  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++. .++..    +++.|.+|+.++.+++-++.+.+.+... .++.++.+|+.+..--...++.+.  ...
T Consensus         6 ~~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~   82 (253)
T PRK06172          6 SGKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTI--AAY   82 (253)
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence            467889888644 34444    4445889999999988776665555433 378899999877432222222221  123


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|+||.|.
T Consensus        83 g~id~li~~a   92 (253)
T PRK06172         83 GRLDYAFNNA   92 (253)
T ss_pred             CCCCEEEECC
Confidence            5679999874

>PRK09072 short chain dehydrogenase; Provisional

Probab=92.65  E-value=0.92  Score=39.42  Aligned_cols=83  Identities=19%  Similarity=0.268  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=.|++.|.   ++..++++|.+|++++.+++-++.....+...+++.++.+|+.+..-....++.+   ...+.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~---~~~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARA---REMGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH---HhcCC
Confidence            35678888866443   3444555688999999998877766655533347889999988754333333333   22356


Q ss_pred             ccEEEEcCC
Q 023482          218 FAKVVANIP  226 (281)
Q Consensus       218 ~d~Vi~n~P  226 (281)
                      .|.+|.+..
T Consensus        81 id~lv~~ag   89 (263)
T PRK09072         81 INVLINNAG   89 (263)
T ss_pred             CCEEEECCC
Confidence            799998743

>PRK07063 short chain dehydrogenase; Provisional

Probab=92.54  E-value=0.87  Score=39.43  Aligned_cols=83  Identities=16%  Similarity=0.215  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++...+.+..   ..++.++.+|+.+..-....++.+.  ..
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~   83 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE--EA   83 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH--HH
Confidence            46789988875443   3344455688999999998888777666543   2378889999877432222222221  22


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        84 ~g~id~li~~a   94 (260)
T PRK07063         84 FGPLDVLVNNA   94 (260)
T ss_pred             hCCCcEEEECC
Confidence            35789999874

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.48  E-value=0.79  Score=42.83  Aligned_cols=97  Identities=19%  Similarity=0.314  Sum_probs=68.5

Q ss_pred             CEEEEEcCC-ccHHHHHH-HHcC-CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          143 DIVLEIGPG-TGSLTNVL-LNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       143 ~~VLDiGcG-~G~~t~~l-a~~~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      .+||=|||| .|...... ++.+ .+|+..|.+++..+.+.....  ++++.+..|+.+.+-   ...++      ..+|
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~a---l~~li------~~~d   70 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDA---LVALI------KDFD   70 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHH---HHHHH------hcCC
Confidence            468999995 23332222 3445 699999999998888877654  378899999888642   22232      3459


Q ss_pred             EEEEcCCCcccHHHHHHhccCCCCcceEEEe
Q 023482          220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLL  250 (281)
Q Consensus       220 ~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~  250 (281)
                      +||+-.|+.....+++.+++.+-..-.....
T Consensus        71 ~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~  101 (389)
T COG1748          71 LVINAAPPFVDLTILKACIKTGVDYVDTSYY  101 (389)
T ss_pred             EEEEeCCchhhHHHHHHHHHhCCCEEEcccC
Confidence            9999999888889999988887766444433

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.39  E-value=0.26  Score=45.48  Aligned_cols=77  Identities=17%  Similarity=0.269  Sum_probs=61.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~  197 (281)
                      ++......=.....+.+.+|.+|+|+.|..|.-|..++..   ..++.|+|.++...+..+..+...+  .++.+++|+.
T Consensus       195 ~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~  274 (413)
T KOG2360|consen  195 FILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFL  274 (413)
T ss_pred             eEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCcccccccccc
Confidence            4444444444556667778899999999999999988874   4699999999999998888776554  7888899998


Q ss_pred             cc
Q 023482          198 KC  199 (281)
Q Consensus       198 ~~  199 (281)
                      ..
T Consensus       275 ~t  276 (413)
T KOG2360|consen  275 NT  276 (413)
T ss_pred             CC
Confidence            86

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.31  E-value=0.67  Score=41.49  Aligned_cols=96  Identities=18%  Similarity=0.222  Sum_probs=67.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .|+.||==|.|.|.   ++..+|+++++++..|+++...+...+.+.+.+++....+|+.+..--....+.+.  .+-+.
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk--~e~G~  114 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVK--KEVGD  114 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHH--HhcCC
Confidence            57789998988885   56666777999999999999998888888766788889999887543222333332  34467


Q ss_pred             ccEEEEcC-------CCcccHHHHHHhc
Q 023482          218 FAKVVANI-------PFNISTDVIKQLL  238 (281)
Q Consensus       218 ~d~Vi~n~-------P~~~~~~~~~~ll  238 (281)
                      .|++|-|-       -++...+.+++..
T Consensus       115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~  142 (300)
T KOG1201|consen  115 VDILVNNAGIVTGKKLLDCSDEEIQKTF  142 (300)
T ss_pred             ceEEEeccccccCCCccCCCHHHHHHHH
Confidence            78888762       2344555555433

>PRK07890 short chain dehydrogenase; Provisional

Probab=92.14  E-value=1  Score=38.73  Aligned_cols=82  Identities=17%  Similarity=0.241  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++. .++..    ++++|.+|+.++.++.-.+.+...+... .++.++..|+.+.......++.+.  ...
T Consensus         4 ~~k~vlItGa~~-~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   80 (258)
T PRK07890          4 KGKVVVVSGVGP-GLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALAL--ERF   80 (258)
T ss_pred             CCCEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHH--HHc
Confidence            456888777644 44444    4455889999999988776666555432 378899999876432222222221  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|+||.|.
T Consensus        81 g~~d~vi~~a   90 (258)
T PRK07890         81 GRVDALVNNA   90 (258)
T ss_pred             CCccEEEECC
Confidence            5689998874

>PLN02253 xanthoxin dehydrogenase

Probab=92.08  E-value=1  Score=39.44  Aligned_cols=82  Identities=13%  Similarity=0.149  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++ |.++..++    +.|.+|+.++.+++..+.....+....++.++.+|+.+...-+..++.+.  ...+
T Consensus        17 ~~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~--~~~g   93 (280)
T PLN02253         17 LGKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTV--DKFG   93 (280)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHH--HHhC
Confidence            45678888854 44555544    45889999999887766655555433478899999887543333333322  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        94 ~id~li~~A  102 (280)
T PLN02253         94 TLDIMVNNA  102 (280)
T ss_pred             CCCEEEECC
Confidence            689998864

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=91.99  E-value=1.2  Score=38.33  Aligned_cols=83  Identities=16%  Similarity=0.203  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      ++++||=.|++ |.++..+    ++.|.+|+.++.+++.++.....+... .++.++.+|+.+.......++.+.  ...
T Consensus        10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   86 (256)
T PRK06124         10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARID--AEH   86 (256)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--Hhc
Confidence            56788888854 4445444    445889999999987776655555433 368899999876432222222221  223


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|.+|.|.-
T Consensus        87 ~~id~vi~~ag   97 (256)
T PRK06124         87 GRLDILVNNVG   97 (256)
T ss_pred             CCCCEEEECCC
Confidence            56789998743

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=91.99  E-value=0.7  Score=43.12  Aligned_cols=85  Identities=16%  Similarity=0.162  Sum_probs=59.9

Q ss_pred             CCEEEEEcCCccHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCccccccccchhhHHHhhcC
Q 023482          142 GDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      +-+|||.=+|+|.=++..+..  + .+|++-|+|+++++.++.|++.++    .+++.+.|+..+-.           ..
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-----------~~  118 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-----------SR  118 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-----------HS
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-----------hc
Confidence            448999999999999888876  2 499999999999999999987553    58899999987531           13


Q ss_pred             CCCccEEEEcCCCcccHHHHHHhc
Q 023482          215 SSGFAKVVANIPFNISTDVIKQLL  238 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~~~~~~~~ll  238 (281)
                      ...||+|=-+ ||....+++...+
T Consensus       119 ~~~fD~IDlD-PfGSp~pfldsA~  141 (377)
T PF02005_consen  119 QERFDVIDLD-PFGSPAPFLDSAL  141 (377)
T ss_dssp             TT-EEEEEE---SS--HHHHHHHH
T ss_pred             cccCCEEEeC-CCCCccHhHHHHH
Confidence            4678877554 7888888887443

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK07326 short chain dehydrogenase; Provisional

Probab=91.98  E-value=1.1  Score=38.01  Aligned_cols=82  Identities=16%  Similarity=0.206  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+..||=.| |+|.++..+++    .|.+|++++.++.........+....++.++.+|+.+...-...++-+.  ...+
T Consensus         5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   81 (237)
T PRK07326          5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIV--AAFG   81 (237)
T ss_pred             CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            356889888 46666666554    4789999999987776665555433578889999876432111122111  1224


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|.||.+.
T Consensus        82 ~~d~vi~~a   90 (237)
T PRK07326         82 GLDVLIANA   90 (237)
T ss_pred             CCCEEEECC
Confidence            678888763

>PRK07024 short chain dehydrogenase; Provisional

Probab=91.91  E-value=1.2  Score=38.60  Aligned_cols=80  Identities=16%  Similarity=0.159  Sum_probs=49.9

Q ss_pred             CEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      ++||=.|++ |.++..+    ++.|.+|+.++.+++.++...+.....+++.++.+|+.+..--...++.+.  ...+..
T Consensus         3 ~~vlItGas-~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~--~~~g~i   79 (257)
T PRK07024          3 LKVFITGAS-SGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFI--AAHGLP   79 (257)
T ss_pred             CEEEEEcCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHH--HhCCCC
Confidence            467777764 4444444    445889999999988877665554433378899999987432222222221  223557


Q ss_pred             cEEEEcC
Q 023482          219 AKVVANI  225 (281)
Q Consensus       219 d~Vi~n~  225 (281)
                      |++|.|.
T Consensus        80 d~lv~~a   86 (257)
T PRK07024         80 DVVIANA   86 (257)
T ss_pred             CEEEECC
Confidence            9999863

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=91.90  E-value=1.1  Score=38.58  Aligned_cols=82  Identities=20%  Similarity=0.208  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|. +|.++..+++    .|.+|+.++.+++.++.+...+... .++.++.+|+.+...-...++.+.  ...
T Consensus         9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   85 (255)
T PRK07523          9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFE--AEI   85 (255)
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHH--Hhc
Confidence            4678998885 5555555544    5889999999988777666655543 268888999877543222233221  233


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        86 ~~~d~li~~a   95 (255)
T PRK07523         86 GPIDILVNNA   95 (255)
T ss_pred             CCCCEEEECC
Confidence            5689999875

>PRK07454 short chain dehydrogenase; Provisional

Probab=91.89  E-value=1.5  Score=37.37  Aligned_cols=82  Identities=10%  Similarity=0.056  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      ..+++|=.|+ +|.++..++    ++|.+|+.++.+++-.+...+..... .++.++.+|+.+.......++.+.  ...
T Consensus         5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   81 (241)
T PRK07454          5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELL--EQF   81 (241)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            4567888885 455554444    45889999999987666555544332 478899999987543222233221  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|.+|.+.
T Consensus        82 ~~id~lv~~a   91 (241)
T PRK07454         82 GCPDVLINNA   91 (241)
T ss_pred             CCCCEEEECC
Confidence            5679999865

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=91.85  E-value=0.51  Score=41.86  Aligned_cols=40  Identities=25%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCccH----HHHHHHHc-------CCEEEEEeCCHHHHHHHHH
Q 023482          142 GDIVLEIGPGTGS----LTNVLLNA-------GATVLAIEKDQHMVGLVRE  181 (281)
Q Consensus       142 ~~~VLDiGcG~G~----~t~~la~~-------~~~v~gvD~s~~~l~~a~~  181 (281)
                      .-+|+-+||+||-    +++.+.+.       ..+|+|.|+|..+++.|+.
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            5689999999997    33333332       2489999999999999973

>PRK07478 short chain dehydrogenase; Provisional

Probab=91.84  E-value=1.3  Score=38.22  Aligned_cols=83  Identities=14%  Similarity=0.209  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..+++.|.+|+.++.+++-++.+...+... .++.++.+|+.+..-....++.+.  ...+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   82 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAV--ERFG   82 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HhcC
Confidence            35678878766443   33444556889999999988777766655443 378888999877543222233221  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        83 ~id~li~~a   91 (254)
T PRK07478         83 GLDIAFNNA   91 (254)
T ss_pred             CCCEEEECC
Confidence            789999875

>PRK06139 short chain dehydrogenase; Provisional

Probab=91.83  E-value=1  Score=41.16  Aligned_cols=83  Identities=16%  Similarity=0.262  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++.++...+.+...+ ++.++.+|+.+..--...++.+.  ...+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g   83 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAA--SFGG   83 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HhcC
Confidence            45688888875443   334445568999999999988877766655433 77888888876432222233222  2236


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        84 ~iD~lVnnA   92 (330)
T PRK06139         84 RIDVWVNNV   92 (330)
T ss_pred             CCCEEEECC
Confidence            789999874

>PRK07677 short chain dehydrogenase; Provisional

Probab=91.83  E-value=1.1  Score=38.71  Aligned_cols=81  Identities=14%  Similarity=0.224  Sum_probs=50.9

Q ss_pred             CEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       143 ~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      +++|=.|++.|.   ++..+++.|.+|+.++.++..++.+.+.+... +++.++.+|+.+..-....++.+.  ...+..
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~i   79 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQID--EKFGRI   79 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HHhCCc
Confidence            567878875543   33444555889999999988777666555432 478889999876432222222221  223567


Q ss_pred             cEEEEcC
Q 023482          219 AKVVANI  225 (281)
Q Consensus       219 d~Vi~n~  225 (281)
                      |.+|.|.
T Consensus        80 d~lI~~a   86 (252)
T PRK07677         80 DALINNA   86 (252)
T ss_pred             cEEEECC
Confidence            8888764

>PRK05876 short chain dehydrogenase; Provisional

Probab=91.76  E-value=1.2  Score=39.27  Aligned_cols=84  Identities=13%  Similarity=0.061  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|.+|+.++.+++.++.+.+.+...+ ++.++.+|+.+..--...++.+.  ...+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g   82 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAF--RLLG   82 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH--HHcC
Confidence            46788888876543   333444558899999999887776655554333 68888999877542222222221  2235


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|++|.|.-
T Consensus        83 ~id~li~nAg   92 (275)
T PRK05876         83 HVDVVFSNAG   92 (275)
T ss_pred             CCCEEEECCC
Confidence            6799998753

>PRK06194 hypothetical protein; Provisional

Probab=91.67  E-value=1.2  Score=39.14  Aligned_cols=83  Identities=7%  Similarity=0.085  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|.+ |.++..+    ++.|.+|+.+|.+++.++.....+... .++.++.+|+.+...-...++.+.  ...
T Consensus         5 ~~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~--~~~   81 (287)
T PRK06194          5 AGKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAAL--ERF   81 (287)
T ss_pred             CCCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            35678877754 4444444    445889999999987776665554432 368889999877532222222221  223


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|+||.|.-
T Consensus        82 g~id~vi~~Ag   92 (287)
T PRK06194         82 GAVHLLFNNAG   92 (287)
T ss_pred             CCCCEEEECCC
Confidence            56799998753

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.58  E-value=1.4  Score=37.67  Aligned_cols=83  Identities=8%  Similarity=0.151  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++++|=.|++ |.++..+    ++.|.+|+.++.+++.++.+...+... .++.++.+|+.+....+..++.+.  ...
T Consensus         4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   80 (253)
T PRK08217          4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIA--EDF   80 (253)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            46788988863 3344444    345889999999987776665555433 378889999876432222222221  122


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|.||.|.-
T Consensus        81 ~~id~vi~~ag   91 (253)
T PRK08217         81 GQLNGLINNAG   91 (253)
T ss_pred             CCCCEEEECCC
Confidence            56799998753

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=91.49  E-value=1.3  Score=38.41  Aligned_cols=82  Identities=23%  Similarity=0.364  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=.|++.|.   ++..+++.|.+|+.++.+++.++.+.+...  .++.++.+|+.+....+..++.+.  ...+.
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~   80 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG--DHVLVVEGDVTSYADNQRAVDQTV--DAFGK   80 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHH--HhcCC
Confidence            46788988865443   334445568899999999887776655442  367888999877543333333221  23356


Q ss_pred             ccEEEEcCC
Q 023482          218 FAKVVANIP  226 (281)
Q Consensus       218 ~d~Vi~n~P  226 (281)
                      .|++|.|.-
T Consensus        81 id~li~~ag   89 (263)
T PRK06200         81 LDCFVGNAG   89 (263)
T ss_pred             CCEEEECCC
Confidence            898888743

>PRK06949 short chain dehydrogenase; Provisional

Probab=91.48  E-value=1.4  Score=37.97  Aligned_cols=83  Identities=18%  Similarity=0.222  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.| |+|.++..+++    .|.+|++++.+++.++.....+... .++.++.+|+.+..-....++.+.  ...
T Consensus         8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   84 (258)
T PRK06949          8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAE--TEA   84 (258)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--Hhc
Confidence            467888888 55555555544    4789999999998877766655432 378899999876431111111111  223


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|+||.|..
T Consensus        85 ~~~d~li~~ag   95 (258)
T PRK06949         85 GTIDILVNNSG   95 (258)
T ss_pred             CCCCEEEECCC
Confidence            56788888643

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.36  E-value=1.5  Score=37.40  Aligned_cols=84  Identities=13%  Similarity=0.169  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+++||=.|++.|.   ++..+++.|.+|++++.++.-.+.+...+....++.++.+|+.+..-....++.+.  ...+.
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~   81 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAAL--ERFGS   81 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHhCC
Confidence            35678888764332   33344455889999999987776665554433368899999877543222222221  22356


Q ss_pred             ccEEEEcCC
Q 023482          218 FAKVVANIP  226 (281)
Q Consensus       218 ~d~Vi~n~P  226 (281)
                      +|+||.+..
T Consensus        82 ~d~vi~~ag   90 (251)
T PRK07231         82 VDILVNNAG   90 (251)
T ss_pred             CCEEEECCC
Confidence            899998753

>PRK08862 short chain dehydrogenase; Provisional

Probab=91.34  E-value=1.3  Score=38.00  Aligned_cols=83  Identities=18%  Similarity=0.220  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++.+|=.|++.|.   ++..+++.|.+|+.++.+++.++.+.+..... .++..+..|..+..--...++.+.  ...+
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g   81 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIE--QQFN   81 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence            46789999988876   55556667899999999998887776655433 356677777765432222223221  2224


Q ss_pred             -CccEEEEcC
Q 023482          217 -GFAKVVANI  225 (281)
Q Consensus       217 -~~d~Vi~n~  225 (281)
                       ..|++|.|.
T Consensus        82 ~~iD~li~na   91 (227)
T PRK08862         82 RAPDVLVNNW   91 (227)
T ss_pred             CCCCEEEECC
Confidence             789999875

>PRK08267 short chain dehydrogenase; Provisional

Probab=91.31  E-value=1.6  Score=37.83  Aligned_cols=82  Identities=11%  Similarity=0.083  Sum_probs=50.8

Q ss_pred             CEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       143 ~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      +++|=.|++.|.   ++..+++.|.+|+.++.+++.++.+..... ..++.++.+|+.+..--...++.+.. ...+..|
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~-~~~~~id   79 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAA-ATGGRLD   79 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHH-HcCCCCC
Confidence            357778865432   334444558899999999988777665544 24789999999775422222221110 1146789


Q ss_pred             EEEEcCC
Q 023482          220 KVVANIP  226 (281)
Q Consensus       220 ~Vi~n~P  226 (281)
                      +||.|.-
T Consensus        80 ~vi~~ag   86 (260)
T PRK08267         80 VLFNNAG   86 (260)
T ss_pred             EEEECCC
Confidence            9998753

>PRK05866 short chain dehydrogenase; Provisional

Probab=91.30  E-value=1.4  Score=39.27  Aligned_cols=83  Identities=19%  Similarity=0.324  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++.|.   ++..+++.|.+|+.++.+++.++...+.+... .++.++.+|+.+.......++.+.  ...+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~~~g  116 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVE--KRIG  116 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            35688988865443   23334455889999999988777665555432 367888999877543222222221  1235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus       117 ~id~li~~A  125 (293)
T PRK05866        117 GVDILINNA  125 (293)
T ss_pred             CCCEEEECC
Confidence            689999874

>PRK05872 short chain dehydrogenase; Provisional

Probab=91.28  E-value=1.5  Score=38.97  Aligned_cols=84  Identities=18%  Similarity=0.227  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+++||=.|++.|.   ++..+++.|++|+.++.+++.++...+.+.....+..+.+|+.+..-....++.+.  ...+.
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~   85 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAV--ERFGG   85 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            46788988865543   33334445889999999998877766655432355666688776432222222221  22357


Q ss_pred             ccEEEEcCC
Q 023482          218 FAKVVANIP  226 (281)
Q Consensus       218 ~d~Vi~n~P  226 (281)
                      .|++|.|.-
T Consensus        86 id~vI~nAG   94 (296)
T PRK05872         86 IDVVVANAG   94 (296)
T ss_pred             CCEEEECCC
Confidence            899998753

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=91.24  E-value=1.5  Score=37.97  Aligned_cols=83  Identities=14%  Similarity=0.113  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.| |+|.++..+++    .|.+|+.++.+++-++.+...+... .++.++.+|+.+..-....++.+.  ...
T Consensus        11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~--~~~   87 (259)
T PRK08213         11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETL--ERF   87 (259)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HHh
Confidence            467899888 45666666554    4889999999988777666555433 378889999887542222222221  122


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|.||.+..
T Consensus        88 ~~id~vi~~ag   98 (259)
T PRK08213         88 GHVDILVNNAG   98 (259)
T ss_pred             CCCCEEEECCC
Confidence            56799998754

>PRK07109 short chain dehydrogenase; Provisional

Probab=91.23  E-value=1.4  Score=40.23  Aligned_cols=84  Identities=12%  Similarity=0.148  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++.|.   ++..+++.|.+|+.++.+++.++...+.+... .++.++.+|+.+...-...++.+.  ...+
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~--~~~g   84 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAE--EELG   84 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH--HHCC
Confidence            45678888865443   22334556889999999988877666655433 378889999877542222222221  2235


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|++|.|.-
T Consensus        85 ~iD~lInnAg   94 (334)
T PRK07109         85 PIDTWVNNAM   94 (334)
T ss_pred             CCCEEEECCC
Confidence            7899998753

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=91.21  E-value=1.5  Score=38.09  Aligned_cols=84  Identities=21%  Similarity=0.228  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+...+...+ ++.++.+|+.+..-....++.+.  ...+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~   86 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIE--KEVG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HhCC
Confidence            46788888877654   344555668899999999887777666665433 78899999876543222333221  2235


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|++|.|.-
T Consensus        87 ~id~li~~ag   96 (265)
T PRK07097         87 VIDILVNNAG   96 (265)
T ss_pred             CCCEEEECCC
Confidence            6899998753

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.10  E-value=1.4  Score=33.15  Aligned_cols=64  Identities=23%  Similarity=0.300  Sum_probs=44.1

Q ss_pred             CCccHHHHHHHHc---CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC
Q 023482          150 PGTGSLTNVLLNA---GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       150 cG~G~~t~~la~~---~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      ||.|.++..+++.   +. +|+.+|.+++.++.++..     .+.++.||+.+...-       .. ......+.|+...
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~~~~i~gd~~~~~~l-------~~-a~i~~a~~vv~~~   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----GVEVIYGDATDPEVL-------ER-AGIEKADAVVILT   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----TSEEEES-TTSHHHH-------HH-TTGGCESEEEEES
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----ccccccccchhhhHH-------hh-cCccccCEEEEcc
Confidence            6777888888764   44 899999999998888764     367999999875421       11 2224577777765


Q ss_pred             C
Q 023482          226 P  226 (281)
Q Consensus       226 P  226 (281)
                      +
T Consensus        71 ~   71 (116)
T PF02254_consen   71 D   71 (116)
T ss_dssp             S
T ss_pred             C
Confidence            5

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=91.06  E-value=1.8  Score=39.32  Aligned_cols=47  Identities=26%  Similarity=0.391  Sum_probs=34.6

Q ss_pred             HHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHH
Q 023482          135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~  181 (281)
                      ......++++||=+|+| .|.++..+++. |+ +|+++|.+++-++.+++
T Consensus       163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~  212 (343)
T PRK09880        163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE  212 (343)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence            33444568899988876 45555666665 66 79999999999998876

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.03  E-value=1.4  Score=33.78  Aligned_cols=73  Identities=19%  Similarity=0.291  Sum_probs=50.3

Q ss_pred             CEEEEEcCCccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEE
Q 023482          143 DIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (281)
Q Consensus       143 ~~VLDiGcG~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~V  221 (281)
                      .+|.|+|-|-=. .+..|+++|..|+++|+++.       +.+  ..++++..|+++-..           .-....|+|
T Consensus        15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~--~g~~~v~DDitnP~~-----------~iY~~A~lI   74 (129)
T COG1255          15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP--EGLRFVVDDITNPNI-----------SIYEGADLI   74 (129)
T ss_pred             CcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc--ccceEEEccCCCccH-----------HHhhCccce
Confidence            489999876433 55677778999999999987       111  368899999887432           112456889


Q ss_pred             EEc-CCCcccHHHHH
Q 023482          222 VAN-IPFNISTDVIK  235 (281)
Q Consensus       222 i~n-~P~~~~~~~~~  235 (281)
                      .|- ||-...+.+++
T Consensus        75 YSiRpppEl~~~ild   89 (129)
T COG1255          75 YSIRPPPELQSAILD   89 (129)
T ss_pred             eecCCCHHHHHHHHH
Confidence            985 66555555554

>PRK07035 short chain dehydrogenase; Provisional

Probab=90.99  E-value=1.6  Score=37.49  Aligned_cols=84  Identities=15%  Similarity=0.239  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++.|.   ++..+++.|.+|+.++.++..++...+.+... .++.++..|+.+..-.+..++.+.  ...+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   84 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIR--ERHG   84 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            45678888877654   33444556889999999987777666655433 367788888876532222222221  2235


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|++|.+..
T Consensus        85 ~id~li~~ag   94 (252)
T PRK07035         85 RLDILVNNAA   94 (252)
T ss_pred             CCCEEEECCC
Confidence            6799887643

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=90.99  E-value=1.6  Score=38.17  Aligned_cols=83  Identities=13%  Similarity=0.174  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..+++.|.+|+.++.+++..+...+.+... .++.++.+|+.+..-.+..++.+.  ...+
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~g   86 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQIL--EDFG   86 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            45678888865443   33444455889999999987776665555433 378889999877543222233221  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        87 ~id~li~~a   95 (278)
T PRK08277         87 PCDILINGA   95 (278)
T ss_pred             CCCEEEECC
Confidence            789999874

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.98  E-value=0.55  Score=42.57  Aligned_cols=51  Identities=31%  Similarity=0.502  Sum_probs=42.2

Q ss_pred             HHHHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhc
Q 023482          133 LAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~  184 (281)
                      .....+.+.+.+||=+|+| +|..+...|+. |+ +|+.+|+++..++.|++ +.
T Consensus       161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~G  214 (354)
T KOG0024|consen  161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FG  214 (354)
T ss_pred             hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hC
Confidence            4445567789999999999 57777777776 54 99999999999999998 54

>PRK05854 short chain dehydrogenase; Provisional

Probab=90.83  E-value=1.6  Score=39.33  Aligned_cols=83  Identities=14%  Similarity=0.147  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++++=.|++.|.   ++..|++.|++|+.+..+++-.+.+.+.+...   .++.++.+|+.+..-....++.+.  ..
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~--~~   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR--AE   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH--Hh
Confidence            46788888876554   34445556899999999987766665544321   268899999987643333333322  23


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        91 ~~~iD~li~nA  101 (313)
T PRK05854         91 GRPIHLLINNA  101 (313)
T ss_pred             CCCccEEEECC
Confidence            46789998764

>PRK07814 short chain dehydrogenase; Provisional

Probab=90.83  E-value=1.7  Score=37.73  Aligned_cols=82  Identities=17%  Similarity=0.253  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++++|=.|. +|.++..++    ++|.+|++++.+++-++...+.+... .++.++.+|+.+...-...++.+.  ...
T Consensus         9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   85 (263)
T PRK07814          9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAV--EAF   85 (263)
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            4678888885 455555544    45889999999987776655554332 378888999877543322333321  122


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|+||.+.
T Consensus        86 ~~id~vi~~A   95 (263)
T PRK07814         86 GRLDIVVNNV   95 (263)
T ss_pred             CCCCEEEECC
Confidence            5689998864

>PRK08589 short chain dehydrogenase; Validated

Probab=90.79  E-value=1.8  Score=37.91  Aligned_cols=82  Identities=20%  Similarity=0.206  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..+++.|.+|+.++.+ +.++...+.+... .++.++.+|+.+..-....++.+.  ...+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g   81 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIK--EQFG   81 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH--HHcC
Confidence            46788888876553   344455568999999999 4444444444332 378889999876532222222221  2335


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        82 ~id~li~~A   90 (272)
T PRK08589         82 RVDVLFNNA   90 (272)
T ss_pred             CcCEEEECC
Confidence            689999874

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=90.75  E-value=0.62  Score=37.13  Aligned_cols=81  Identities=19%  Similarity=0.261  Sum_probs=51.4

Q ss_pred             EEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCC---c---ccH----
Q 023482          165 TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF---N---IST----  231 (281)
Q Consensus       165 ~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~---~---~~~----  231 (281)
                      +|+|+|+.+++++.+++++.+.   +++++++.+=.+++-.          .+.+..|+++-|+=|   .   +.+    
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~----------i~~~~v~~~iFNLGYLPggDk~i~T~~~T   70 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY----------IPEGPVDAAIFNLGYLPGGDKSITTKPET   70 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------------S--EEEEEEEESB-CTS-TTSB--HHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh----------CccCCcCEEEEECCcCCCCCCCCCcCcHH
Confidence            6999999999999999999866   3799999887776421          122478999999644   1   111    


Q ss_pred             -----HHHHHhccCCCCcceEEEeehhhH
Q 023482          232 -----DVIKQLLPMGDIFSEVVLLLQEET  255 (281)
Q Consensus       232 -----~~~~~ll~~~~~~~~~~~~~~~~~  255 (281)
                           .....++.++|.+..+.+.-+.++
T Consensus        71 Tl~Al~~al~lL~~gG~i~iv~Y~GH~gG   99 (140)
T PF06962_consen   71 TLKALEAALELLKPGGIITIVVYPGHPGG   99 (140)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE--STCHH
T ss_pred             HHHHHHHHHHhhccCCEEEEEEeCCCCCC
Confidence                 222367788888766666544433

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.74  E-value=1.9  Score=36.59  Aligned_cols=83  Identities=13%  Similarity=0.208  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++ |.++..++    +.|.+|++++.+++-.+.+.+.....+++.++.+|+.+..-....++.+.  ...+
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~   80 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAA--KVLN   80 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHH--HHhC
Confidence            35789999975 44444443    45889999999988777665554444578889999877432222222111  1124


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|.++.+..
T Consensus        81 ~id~ii~~ag   90 (238)
T PRK05786         81 AIDGLVVTVG   90 (238)
T ss_pred             CCCEEEEcCC
Confidence            5688887653

>PRK08226 short chain dehydrogenase; Provisional

Probab=90.74  E-value=1.8  Score=37.43  Aligned_cols=82  Identities=12%  Similarity=0.121  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|+. |.++..+++    .|.+|+.++.++...+.+.+......++.++.+|+.+..-.+..++.+.  ...+
T Consensus         5 ~~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~   81 (263)
T PRK08226          5 TGKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAK--EKEG   81 (263)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            45688888865 445555544    5889999999886544443332222477888999877543232333222  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|.+|.|.
T Consensus        82 ~id~vi~~a   90 (263)
T PRK08226         82 RIDILVNNA   90 (263)
T ss_pred             CCCEEEECC
Confidence            678888864

>PRK08643 acetoin reductase; Validated

Probab=90.65  E-value=1.8  Score=37.33  Aligned_cols=81  Identities=11%  Similarity=0.176  Sum_probs=51.4

Q ss_pred             CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++++|=.|+.. .++..+    ++.|.+|+.++.+++..+.+...+... .++.++.+|+.+..--...++.+.  ...+
T Consensus         2 ~k~~lItGas~-giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~   78 (256)
T PRK08643          2 SKVALVTGAGQ-GIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVV--DTFG   78 (256)
T ss_pred             CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            35677777544 444444    445889999999988777666655433 377888999877543222333322  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        79 ~id~vi~~a   87 (256)
T PRK08643         79 DLNVVVNNA   87 (256)
T ss_pred             CCCEEEECC
Confidence            689998875

>PRK06138 short chain dehydrogenase; Provisional

Probab=90.64  E-value=2  Score=36.79  Aligned_cols=83  Identities=16%  Similarity=0.207  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +++++|=.|+. |.++..+    ++.|.+|++++.+++.............++.++.+|+.+.......++.+.  ...+
T Consensus         4 ~~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~--~~~~   80 (252)
T PRK06138          4 AGRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVA--ARWG   80 (252)
T ss_pred             CCcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            35688888874 4444444    445889999999987766655544422478899999877543222222221  2235


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|+||.+..
T Consensus        81 ~id~vi~~ag   90 (252)
T PRK06138         81 RLDVLVNNAG   90 (252)
T ss_pred             CCCEEEECCC
Confidence            7899998654

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.51  E-value=1.4  Score=38.32  Aligned_cols=83  Identities=12%  Similarity=0.063  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCc----cH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~----G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++.+|=.|.+.    |. ++..+++.|++|+.++.++...+.+.+.....+.+.++.+|+.+..--...++.+.  ...
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~   86 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIA--EEW   86 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHH--HHc
Confidence            467899999764    32 34445556889999998865433333222222345577888877543334444442  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        87 g~ld~lv~nA   96 (258)
T PRK07533         87 GRLDFLLHSI   96 (258)
T ss_pred             CCCCEEEEcC
Confidence            6789999874

>PRK07904 short chain dehydrogenase; Provisional

Probab=90.49  E-value=1.7  Score=37.80  Aligned_cols=81  Identities=7%  Similarity=0.107  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCccHHHHHHH----HcC-CEEEEEeCCHHH-HHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhh
Q 023482          141 EGDIVLEIGPGTGSLTNVLL----NAG-ATVLAIEKDQHM-VGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~-~~v~gvD~s~~~-l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      .+++||=.|++.| ++..++    +.+ .+|+.++.+++- ++.+.+.+...  .+++++.+|+.+..-....++.+   
T Consensus         7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~---   82 (253)
T PRK07904          7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAA---   82 (253)
T ss_pred             CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHH---
Confidence            5678999998554 444444    444 799999998764 55554444332  27899999987643222222222   


Q ss_pred             cCCCCccEEEEcC
Q 023482          213 KSSSGFAKVVANI  225 (281)
Q Consensus       213 ~~~~~~d~Vi~n~  225 (281)
                      ...+..|++|.|.
T Consensus        83 ~~~g~id~li~~a   95 (253)
T PRK07904         83 FAGGDVDVAIVAF   95 (253)
T ss_pred             HhcCCCCEEEEee
Confidence            2235789888764

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=90.42  E-value=3.8  Score=37.67  Aligned_cols=45  Identities=24%  Similarity=0.466  Sum_probs=36.9

Q ss_pred             CCCCEEEEEcCC-ccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhc
Q 023482          140 QEGDIVLEIGPG-TGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       140 ~~~~~VLDiGcG-~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      .++.+|+=+||| .|.++..+++. | .+|+++|.+++-++.|++...
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g  214 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG  214 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC
Confidence            345599999999 57787777776 4 499999999999999998654

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=90.33  E-value=1.1  Score=39.26  Aligned_cols=36  Identities=28%  Similarity=0.275  Sum_probs=27.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHH
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMV  176 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l  176 (281)
                      ....|||+|+|+|..++.++.. +++|+--|.-....
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~  122 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVE  122 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHH
Confidence            3567999999999888888875 67888877654433

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=90.29  E-value=2.1  Score=36.98  Aligned_cols=82  Identities=13%  Similarity=0.193  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-CCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..+++.|.+|+.++.++... .+...+.. ..++.++.+|+.+..-....++.+.  ...+
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   83 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVH-EVAAELRAAGGEALALTADLETYAGAQAAMAAAV--EAFG   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHH-HHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHH--HHcC
Confidence            45688888865443   3344455688999999986433 33333332 2367888899876432222222221  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        84 ~id~lv~nA   92 (260)
T PRK12823         84 RIDVLINNV   92 (260)
T ss_pred             CCeEEEECC
Confidence            689999875

>PRK05650 short chain dehydrogenase; Provisional

Probab=90.28  E-value=2  Score=37.51  Aligned_cols=79  Identities=11%  Similarity=0.056  Sum_probs=49.0

Q ss_pred             EEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          144 IVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      +||=.|+ +|.++..+    ++.|.+|+.++.+++-++.+...+... .++.++.+|+.+....+..++.+.  ...+.+
T Consensus         2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~--~~~~~i   78 (270)
T PRK05650          2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACE--EKWGGI   78 (270)
T ss_pred             EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHcCCC
Confidence            5676675 44444444    445889999999987776655544433 378889999876542222222222  223568


Q ss_pred             cEEEEcC
Q 023482          219 AKVVANI  225 (281)
Q Consensus       219 d~Vi~n~  225 (281)
                      |++|.|.
T Consensus        79 d~lI~~a   85 (270)
T PRK05650         79 DVIVNNA   85 (270)
T ss_pred             CEEEECC
Confidence            9999874

>PRK09242 tropinone reductase; Provisional

Probab=90.27  E-value=2  Score=37.10  Aligned_cols=84  Identities=24%  Similarity=0.362  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .++++|=.|++.|.   ++..+++.|.+|+.++.+++.++.....+...   .++.++.+|+.+..-....++.+.  ..
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~   85 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE--DH   85 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH--HH
Confidence            46788888875442   33334445889999999988777666555432   378888999876432222222221  23


Q ss_pred             CCCccEEEEcCC
Q 023482          215 SSGFAKVVANIP  226 (281)
Q Consensus       215 ~~~~d~Vi~n~P  226 (281)
                      .+..|+||.+.-
T Consensus        86 ~g~id~li~~ag   97 (257)
T PRK09242         86 WDGLHILVNNAG   97 (257)
T ss_pred             cCCCCEEEECCC
Confidence            367899988754

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=90.23  E-value=2  Score=36.98  Aligned_cols=82  Identities=13%  Similarity=0.150  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|+ +|.++..+    ++.|.+|+.++.+++..+.+.+.+...+ ++.++.+|+.+....+..++.+.  ...
T Consensus         6 ~~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   82 (262)
T PRK13394          6 NGKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVA--ERF   82 (262)
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            4567886665 34444444    4458899999999977766666554333 67889999887543222222221  123


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|+||.+.
T Consensus        83 ~~~d~vi~~a   92 (262)
T PRK13394         83 GSVDILVSNA   92 (262)
T ss_pred             CCCCEEEECC
Confidence            5678888864

>PRK07062 short chain dehydrogenase; Provisional

Probab=90.13  E-value=1.9  Score=37.40  Aligned_cols=83  Identities=22%  Similarity=0.290  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++-++.+.+.+...   .++.++.+|+.+..-....++.+.  ..
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~   84 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE--AR   84 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH--Hh
Confidence            46789999976553   33444456889999999988777665554322   267788888877542222222221  22


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        85 ~g~id~li~~A   95 (265)
T PRK07062         85 FGGVDMLVNNA   95 (265)
T ss_pred             cCCCCEEEECC
Confidence            35689998875

>PRK07791 short chain dehydrogenase; Provisional

Probab=90.10  E-value=2  Score=38.03  Aligned_cols=83  Identities=16%  Similarity=0.234  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCH---------HHHHHHHHHhcCC-CCeEEEEcCccccccccchhh
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ---------HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~---------~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+.         +.++.+...+... .++.++.+|+.+..-....++
T Consensus         5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~   84 (286)
T PRK07791          5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVD   84 (286)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence            56789999977664   3344555688999988764         4444444444332 377888889877543222233


Q ss_pred             HHHhhcCCCCccEEEEcC
Q 023482          208 LFERRKSSSGFAKVVANI  225 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~  225 (281)
                      .+.  ...+..|++|.|.
T Consensus        85 ~~~--~~~g~id~lv~nA  100 (286)
T PRK07791         85 AAV--ETFGGLDVLVNNA  100 (286)
T ss_pred             HHH--HhcCCCCEEEECC
Confidence            221  2336789999874

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=90.10  E-value=4.6  Score=34.56  Aligned_cols=72  Identities=14%  Similarity=0.195  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccH--HHHHHHH--c--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGS--LTNVLLN--A--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~--~t~~la~--~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~  196 (281)
                      .|...+++.....-...+.++|+.|+.|.  .++.|+.  +  |++++.|-.++.-+...++.+...+   .++|+.||.
T Consensus        26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~  105 (218)
T PF07279_consen   26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA  105 (218)
T ss_pred             CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence            45677777777766677899999776543  3455443  2  7899999999888777777776443   468888885


Q ss_pred             c
Q 023482          197 V  197 (281)
Q Consensus       197 ~  197 (281)
                      .
T Consensus       106 ~  106 (218)
T PF07279_consen  106 P  106 (218)
T ss_pred             H
Confidence            3

The function of this family is unknown.

>PRK08303 short chain dehydrogenase; Provisional

Probab=90.05  E-value=1.7  Score=39.14  Aligned_cols=83  Identities=18%  Similarity=0.237  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCH----------HHHHHHHHHhcCCC-CeEEEEcCccccccccchh
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ----------HMVGLVRERFASID-QLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~----------~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~  206 (281)
                      .++++|-.|++.|.   ++..+++.|++|+.++.+.          +.++.+.+.+...+ ++.++.+|+.+..-....+
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   86 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV   86 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            46789999976654   3344455588999998873          33444433443333 6778899988754333333


Q ss_pred             hHHHhhcCCCCccEEEEcC
Q 023482          207 SLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~  225 (281)
                      +.+.  ...+..|++|.|.
T Consensus        87 ~~~~--~~~g~iDilVnnA  103 (305)
T PRK08303         87 ERID--REQGRLDILVNDI  103 (305)
T ss_pred             HHHH--HHcCCccEEEECC
Confidence            3332  2235789988876

>PRK07774 short chain dehydrogenase; Provisional

Probab=89.92  E-value=2.2  Score=36.52  Aligned_cols=83  Identities=14%  Similarity=0.194  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.| |+|.++..+++    .|.+|+.++.++...+.....+... .++.++.+|+.+..-....+..+.  ...
T Consensus         5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   81 (250)
T PRK07774          5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATV--SAF   81 (250)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence            456788888 45555655554    5889999999987665555544322 367788899877542222222221  122


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|+||.|..
T Consensus        82 ~~id~vi~~ag   92 (250)
T PRK07774         82 GGIDYLVNNAA   92 (250)
T ss_pred             CCCCEEEECCC
Confidence            46899998654

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=89.84  E-value=1.8  Score=37.49  Aligned_cols=81  Identities=14%  Similarity=0.241  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|-.|++.|.   ++..+++.|++|+.++.++.  +.+.+..... .++.++.+|+.+..-....++.+.  ...+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g   82 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAV--EVMG   82 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHH--HHcC
Confidence            46789999976654   33444556889999887642  2222222222 378889999877543332333221  2335


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        83 ~iD~lv~~a   91 (251)
T PRK12481         83 HIDILINNA   91 (251)
T ss_pred             CCCEEEECC
Confidence            789999874

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=89.79  E-value=2.6  Score=35.92  Aligned_cols=83  Identities=16%  Similarity=0.149  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|+ +|.++..+    +++|.+|++++.++..+..+...+... .++.++.+|+.+..-....++.+.  ...
T Consensus         5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   81 (251)
T PRK12826          5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGV--EDF   81 (251)
T ss_pred             CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHh
Confidence            3567887775 45555554    445889999999976665554444332 368899999876432222222221  122


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +.+|.||.+..
T Consensus        82 ~~~d~vi~~ag   92 (251)
T PRK12826         82 GRLDILVANAG   92 (251)
T ss_pred             CCCCEEEECCC
Confidence            46898888753

>PRK06196 oxidoreductase; Provisional

Probab=89.76  E-value=2.2  Score=38.30  Aligned_cols=79  Identities=15%  Similarity=0.143  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++ |.++..++    +.|.+|++++.+++..+.+...+.   ++.++.+|+.+..--...++.+.  ...+
T Consensus        25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~---~v~~~~~Dl~d~~~v~~~~~~~~--~~~~   98 (315)
T PRK06196         25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGID---GVEVVMLDLADLESVRAFAERFL--DSGR   98 (315)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh---hCeEEEccCCCHHHHHHHHHHHH--hcCC
Confidence            45788988865 44555544    458899999999877665554443   47888999887543222222221  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        99 ~iD~li~nA  107 (315)
T PRK06196         99 RIDILINNA  107 (315)
T ss_pred             CCCEEEECC
Confidence            689999875

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=89.52  E-value=1  Score=42.00  Aligned_cols=51  Identities=20%  Similarity=0.224  Sum_probs=40.5

Q ss_pred             HHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Q 023482          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      .+.+++.++++||-|.+|-......+...-.+|++||+||..+...+.+..
T Consensus        28 ~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   28 MEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             HHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence            455677899999999877666666665556799999999999988876655

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=89.50  E-value=2.7  Score=36.18  Aligned_cols=83  Identities=12%  Similarity=0.122  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|.+. .++..+    ++.|.+|+.++.+++.+......+... .++.++.+|+.+..--...++.+.  ...
T Consensus         8 ~~k~~lItGas~-giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   84 (254)
T PRK08085          8 AGKNILITGSAQ-GIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIE--KDI   84 (254)
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHH--Hhc
Confidence            466888888554 444444    445889999999987776665555433 367788888876532222222221  223


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +.+|++|.|.-
T Consensus        85 ~~id~vi~~ag   95 (254)
T PRK08085         85 GPIDVLINNAG   95 (254)
T ss_pred             CCCCEEEECCC
Confidence            56899998753

>PRK08265 short chain dehydrogenase; Provisional

Probab=89.49  E-value=2.5  Score=36.73  Aligned_cols=81  Identities=15%  Similarity=0.178  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++-++...+...  .++.++.+|+.+..-....++.+.  ...+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g~   80 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG--ERARFIATDITDDAAIERAVATVV--ARFGR   80 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CeeEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence            45688888864432   334444558899999999876655544332  368889999877432222222221  22356


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        81 id~lv~~a   88 (261)
T PRK08265         81 VDILVNLA   88 (261)
T ss_pred             CCEEEECC
Confidence            89998874

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=89.38  E-value=2.7  Score=36.27  Aligned_cols=83  Identities=17%  Similarity=0.213  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++.|.   ++..+++.|.+++.++.+...++.+...+... .++.++.+|+.+..-....+..+.  ...+
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~~   87 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAL--SKLG   87 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            46789999965543   33344556889999999888777665544432 367888899876432111111111  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|.+|.+.
T Consensus        88 ~~d~li~~a   96 (255)
T PRK06113         88 KVDILVNNA   96 (255)
T ss_pred             CCCEEEECC
Confidence            689998864

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.23  E-value=2.7  Score=35.80  Aligned_cols=81  Identities=11%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             CCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++++|=.|+ +|.++..+++    .|.+|+.++.++.-.+.....+... .++.++.+|+.+..-....++.+.  ...+
T Consensus         7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   83 (239)
T PRK07666          7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLK--NELG   83 (239)
T ss_pred             CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            467888884 6666666544    4889999999987666554444333 378889999876432222222211  1224


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|.||.+.
T Consensus        84 ~id~vi~~a   92 (239)
T PRK07666         84 SIDILINNA   92 (239)
T ss_pred             CccEEEEcC
Confidence            678888864

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=89.14  E-value=3.3  Score=35.35  Aligned_cols=82  Identities=13%  Similarity=0.171  Sum_probs=51.7

Q ss_pred             CCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++++|=.|++ |.++..++    +.|.+|+.++.++.....+...+... .++.++.+|+.+.......++.+.  ...+
T Consensus         3 ~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~   79 (250)
T TIGR03206         3 DKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAE--QALG   79 (250)
T ss_pred             CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            5678888854 44454444    45789999999988776665554433 378899999876543222222221  1224


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|++|.+..
T Consensus        80 ~~d~vi~~ag   89 (250)
T TIGR03206        80 PVDVLVNNAG   89 (250)
T ss_pred             CCCEEEECCC
Confidence            6788888764

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=89.12  E-value=3.1  Score=37.41  Aligned_cols=82  Identities=12%  Similarity=0.154  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|+.. .++..    |++.|.+|+.++.++.-.+.+.+.+... .++.++.+|+.+..--...++.+.  ...
T Consensus         5 ~~k~vlVTGas~-gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~   81 (322)
T PRK07453          5 AKGTVIITGASS-GVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFR--ALG   81 (322)
T ss_pred             CCCEEEEEcCCC-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHH--HhC
Confidence            456788888644 34444    4445889999999987776665554322 378889999877543222222221  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        82 ~~iD~li~nA   91 (322)
T PRK07453         82 KPLDALVCNA   91 (322)
T ss_pred             CCccEEEECC
Confidence            4689999874

>PRK12939 short chain dehydrogenase; Provisional

Probab=89.03  E-value=3.2  Score=35.34  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++++|=.|+ +|.++..+++    .|.+|++++.+++-++...+.+... .++.++.+|+.+.......++.+.  ...
T Consensus         6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   82 (250)
T PRK12939          6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAA--AAL   82 (250)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            4577887775 4555555544    4889999999988776665554332 378999999877442222222221  122


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|+||.+.
T Consensus        83 ~~id~vi~~a   92 (250)
T PRK12939         83 GGLDGLVNNA   92 (250)
T ss_pred             CCCCEEEECC
Confidence            5689998764

>PRK06181 short chain dehydrogenase; Provisional

Probab=88.96  E-value=3.1  Score=35.96  Aligned_cols=80  Identities=15%  Similarity=0.253  Sum_probs=48.8

Q ss_pred             CEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+||=.|+ +|.++..+    ++.+.+|++++.++.-.+.+...+... .++.++.+|+.+..-....++.+.  ...+.
T Consensus         2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~   78 (263)
T PRK06181          2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAV--ARFGG   78 (263)
T ss_pred             CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence            35777774 44455544    445789999999987766555544433 378889999877542222222221  12246


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|+||.+.
T Consensus        79 id~vi~~a   86 (263)
T PRK06181         79 IDILVNNA   86 (263)
T ss_pred             CCEEEECC
Confidence            78888764

>PRK06125 short chain dehydrogenase; Provisional

Probab=88.88  E-value=3.1  Score=35.96  Aligned_cols=78  Identities=17%  Similarity=0.248  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .++++|=.|++.| ++..    +++.|++|++++.+++.++.+...+...  .++.++.+|+.+..-..   .++   ..
T Consensus         6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~---~~~---~~   78 (259)
T PRK06125          6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEARE---QLA---AE   78 (259)
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHH---HHH---HH
Confidence            4578888886544 4444    4455889999999988777666555432  36788888887632111   112   12


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        79 ~g~id~lv~~a   89 (259)
T PRK06125         79 AGDIDILVNNA   89 (259)
T ss_pred             hCCCCEEEECC
Confidence            35689888874

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=88.78  E-value=2.7  Score=35.91  Aligned_cols=80  Identities=16%  Similarity=0.144  Sum_probs=49.4

Q ss_pred             CEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ++||=.| |+|.++..++.    +|.+|++++.++...+.+....... .++.++.+|+.+..-....++.+.  ...+.
T Consensus         2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~   78 (255)
T TIGR01963         2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAA--AEFGG   78 (255)
T ss_pred             CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HhcCC
Confidence            3566666 55666666654    4789999999987776665544332 378899999977432111121211  22345


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|.||.+.
T Consensus        79 ~d~vi~~a   86 (255)
T TIGR01963        79 LDILVNNA   86 (255)
T ss_pred             CCEEEECC
Confidence            78888764

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06720 hypothetical protein; Provisional

Probab=88.61  E-value=4.3  Score=33.27  Aligned_cols=84  Identities=19%  Similarity=0.223  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++.+|-.|.+.|.   ++..+++.|.+|+.+|.+++.++.+.+.+... ..+.++..|..+..--...++.+.  ...+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~--~~~G   92 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITL--NAFS   92 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            46678888876543   44445566889999999988776655544332 366777888866432222222221  2336


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|.+|.|.-
T Consensus        93 ~iDilVnnAG  102 (169)
T PRK06720         93 RIDMLFQNAG  102 (169)
T ss_pred             CCCEEEECCC
Confidence            7899998854

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=88.61  E-value=2.7  Score=36.30  Aligned_cols=82  Identities=17%  Similarity=0.203  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++.|.   ++..+++.|++|+.++.++ -.+.+.+..... .++.++.+|+.+.......++.+.  ...+
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~g   90 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEAL--EEFG   90 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            46789999986654   3344455688999998883 334444443322 478899999887543222222221  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|.+|.|.
T Consensus        91 ~id~li~~a   99 (258)
T PRK06935         91 KIDILVNNA   99 (258)
T ss_pred             CCCEEEECC
Confidence            689999864

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=88.59  E-value=0.36  Score=42.83  Aligned_cols=50  Identities=18%  Similarity=0.193  Sum_probs=38.1

Q ss_pred             HHHHHHHHHh--c-CCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHH
Q 023482          128 EINDQLAAAA--A-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVG  177 (281)
Q Consensus       128 ~~~~~l~~~l--~-~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~  177 (281)
                      .....+.+.+  . ...+++|||+|||.|.-.+.....+ ..+...|.+.+.++
T Consensus       100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            3455555443  1 2368899999999999998888876 68999999988873

>PRK07576 short chain dehydrogenase; Provisional

Probab=88.58  E-value=3.2  Score=36.15  Aligned_cols=82  Identities=15%  Similarity=0.143  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++++|=.|. +|.++..+    +..|++|++++.+++-++...+.+... .++.++.+|+.+..-....++.+.  ...
T Consensus         8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~--~~~   84 (264)
T PRK07576          8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIA--DEF   84 (264)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            4678888885 44445444    445889999999987766555444332 367788899876432222222211  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        85 ~~iD~vi~~a   94 (264)
T PRK07576         85 GPIDVLVSGA   94 (264)
T ss_pred             CCCCEEEECC
Confidence            5679998764

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.55  E-value=2.8  Score=36.83  Aligned_cols=83  Identities=19%  Similarity=0.138  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCc----cH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~----G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++.+|=.|++.    |. ++..|++.|++|+.++.++...+..++.....+...++.+|+.+..--+..++.+.  ...
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~--~~~   83 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALE--KKW   83 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHH--HHh
Confidence            467899999754    33 45556667899999988764433333322222333467888877543333333332  233


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        84 g~iD~lVnnA   93 (271)
T PRK06505         84 GKLDFVVHAI   93 (271)
T ss_pred             CCCCEEEECC
Confidence            6789999874

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.44  E-value=2.9  Score=36.64  Aligned_cols=83  Identities=20%  Similarity=0.224  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCc----cH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~----G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|.+.    |. ++..+++.|++|+.++.+....+.+.+.....+.+.++.+|+.+..--+..++.+.  ...
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~   82 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELG--KVW   82 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHH--hhc
Confidence            467888889754    33 45666667889999888743333333322222456678888877543333333322  234


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        83 g~iD~linnA   92 (262)
T PRK07984         83 PKFDGFVHSI   92 (262)
T ss_pred             CCCCEEEECC
Confidence            6789999885

>PRK07831 short chain dehydrogenase; Provisional

Probab=88.24  E-value=3.7  Score=35.51  Aligned_cols=84  Identities=18%  Similarity=0.262  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-C--ccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-C--CCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGP-G--TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGc-G--~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~--~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .++++|=.|. |  .|. ++..+++.|.+|+.+|.++.-++.+.+.+.. .  .++.++.+|+.+..--+..++.+.  .
T Consensus        16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~   93 (262)
T PRK07831         16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV--E   93 (262)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH--H
Confidence            4578888885 3  444 3444555688999999998877766665543 2  368889999876432222222221  2


Q ss_pred             CCCCccEEEEcCC
Q 023482          214 SSSGFAKVVANIP  226 (281)
Q Consensus       214 ~~~~~d~Vi~n~P  226 (281)
                      ..+..|++|.|.-
T Consensus        94 ~~g~id~li~~ag  106 (262)
T PRK07831         94 RLGRLDVLVNNAG  106 (262)
T ss_pred             HcCCCCEEEECCC
Confidence            2356899988753

>PRK06197 short chain dehydrogenase; Provisional

Probab=88.06  E-value=3.4  Score=36.81  Aligned_cols=82  Identities=11%  Similarity=0.110  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .+++||=.|+. |.++..+    ++.|.+|+.+..+++..+.+.+.+..   ..++.++.+|+.+..--...++.+.  .
T Consensus        15 ~~k~vlItGas-~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~   91 (306)
T PRK06197         15 SGRVAVVTGAN-TGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR--A   91 (306)
T ss_pred             CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH--h
Confidence            56788888854 4444444    44588999999988776655544432   1368889999887643322233221  1


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|++|.|.
T Consensus        92 ~~~~iD~li~nA  103 (306)
T PRK06197         92 AYPRIDLLINNA  103 (306)
T ss_pred             hCCCCCEEEECC
Confidence            235689988864

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.00  E-value=2.9  Score=37.46  Aligned_cols=82  Identities=17%  Similarity=0.173  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC-HHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s-~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|++.|.   ++..+++.|++|+.+|.+ ....+.+.+.+... +++.++.+|+.+..-....++.+.  . .
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~--~-~   87 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAV--G-L   87 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH--H-h
Confidence            46788988877654   444555668899999874 33444444434332 378889999877543222233221  2 4


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        88 g~iD~li~nA   97 (306)
T PRK07792         88 GGLDIVVNNA   97 (306)
T ss_pred             CCCCEEEECC
Confidence            6789999874

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=87.99  E-value=3.1  Score=36.72  Aligned_cols=83  Identities=13%  Similarity=0.108  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++.+|=.|++    .|. ++..+++.|++|+.++.+....+.+.+.....+.-.++.+|+.+..--...++.+.  ...
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~--~~~   81 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLK--KDL   81 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHH--HHc
Confidence            46788999974    443 34445566889999998854322222222222211567888877653333344332  234


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        82 g~iDilVnnA   91 (274)
T PRK08415         82 GKIDFIVHSV   91 (274)
T ss_pred             CCCCEEEECC
Confidence            6789999874

>PRK05717 oxidoreductase; Validated

Probab=87.95  E-value=3.5  Score=35.52  Aligned_cols=82  Identities=12%  Similarity=0.125  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|.+ |.++..+    ++.|++|+.++.++.-.+...+...  .++.++.+|+.+..-....++.+.  ...+
T Consensus         9 ~~k~vlItG~s-g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g   83 (255)
T PRK05717          9 NGRVALVTGAA-RGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALG--ENAWFIAMDVADEAQVAAGVAEVL--GQFG   83 (255)
T ss_pred             CCCEEEEeCCc-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcC--CceEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence            46788888764 4444444    4458899999988765544433332  368889999887532222222221  2235


Q ss_pred             CccEEEEcCCC
Q 023482          217 GFAKVVANIPF  227 (281)
Q Consensus       217 ~~d~Vi~n~P~  227 (281)
                      .+|++|.|..+
T Consensus        84 ~id~li~~ag~   94 (255)
T PRK05717         84 RLDALVCNAAI   94 (255)
T ss_pred             CCCEEEECCCc
Confidence            68999987543

>PRK06500 short chain dehydrogenase; Provisional

Probab=87.91  E-value=4.2  Score=34.64  Aligned_cols=81  Identities=16%  Similarity=0.214  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++++||=.|++. .++..    +++.|.+|++++.+++.++...+...  .++.++++|..+.......++.+.  ...+
T Consensus         5 ~~k~vlItGasg-~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   79 (249)
T PRK06500          5 QGKTALITGGTS-GIGLETARQFLAEGARVAITGRDPASLEAARAELG--ESALVIRADAGDVAAQKALAQALA--EAFG   79 (249)
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHH--HHhC
Confidence            356788777653 34444    44558899999999876665544432  367788888876542222223222  2235


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|+||.|..
T Consensus        80 ~id~vi~~ag   89 (249)
T PRK06500         80 RLDAVFINAG   89 (249)
T ss_pred             CCCEEEECCC
Confidence            6899998753

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=87.48  E-value=3.6  Score=35.69  Aligned_cols=81  Identities=15%  Similarity=0.212  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=.|++.|.   ++..+++.|.+|+.++.+++.++......  ..++.++.+|+.+..-.+..++.+.  ...+.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~   79 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH--GDAVVGVEGDVRSLDDHKEAVARCV--AAFGK   79 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCceEEEEeccCCHHHHHHHHHHHH--HHhCC
Confidence            45688888875442   33444456889999999987666554322  1367888889876432222222221  22356


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        80 id~li~~A   87 (262)
T TIGR03325        80 IDCLIPNA   87 (262)
T ss_pred             CCEEEECC
Confidence            78888874

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=87.46  E-value=3.4  Score=35.98  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=48.4

Q ss_pred             CCCEEEEEcC-CccHHH----HHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGP-GTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGc-G~G~~t----~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++.+|=.|+ |++.++    ..+++.|++|+....+....+.+++.....+....+.+|+.+..--...++.+.  ...
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   82 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLG--KHW   82 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHH--HHh
Confidence            4678898996 333344    444456889988876544334444333332344577888877543333333332  234


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        83 g~iD~lVnnA   92 (261)
T PRK08690         83 DGLDGLVHSI   92 (261)
T ss_pred             CCCcEEEECC
Confidence            6789999885

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=87.43  E-value=0.85  Score=39.00  Aligned_cols=63  Identities=19%  Similarity=0.230  Sum_probs=43.1

Q ss_pred             CEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEE
Q 023482          143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi  222 (281)
                      -++|||||=+......-. .-.+|+.||+++.             .-.+.+.|+.+.|++.         .+.+.||+|.
T Consensus        53 lrlLEVGals~~N~~s~~-~~fdvt~IDLns~-------------~~~I~qqDFm~rplp~---------~~~e~FdvIs  109 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTS-GWFDVTRIDLNSQ-------------HPGILQQDFMERPLPK---------NESEKFDVIS  109 (219)
T ss_pred             ceEEeecccCCCCccccc-CceeeEEeecCCC-------------CCCceeeccccCCCCC---------CcccceeEEE
Confidence            489999987655333211 1237999999861             2358899999988754         3457899998


Q ss_pred             EcCCCc
Q 023482          223 ANIPFN  228 (281)
Q Consensus       223 ~n~P~~  228 (281)
                      ..+-.+
T Consensus       110 ~SLVLN  115 (219)
T PF11968_consen  110 LSLVLN  115 (219)
T ss_pred             EEEEEe
Confidence            865443

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=87.39  E-value=0.65  Score=43.08  Aligned_cols=92  Identities=11%  Similarity=0.182  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH----------hcC-CCCeEE
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER----------FAS-IDQLKV  191 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~----------~~~-~~~v~~  191 (281)
                      +..+....+.+.+.+.+++.-.|+|.|.|.....++..+  .+=+|+|+....-+.|..+          +.+ .+.++.
T Consensus       176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~  255 (419)
T KOG3924|consen  176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET  255 (419)
T ss_pred             hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence            345567778888899999999999999999888887763  3678898866555544332          222 236889


Q ss_pred             EEcCccccccccchhhHHHhhcCCCCccEEEEcC
Q 023482          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       192 ~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      ++|++..-...    +.+     ....++|+.|.
T Consensus       256 i~gsf~~~~~v----~eI-----~~eatvi~vNN  280 (419)
T KOG3924|consen  256 IHGSFLDPKRV----TEI-----QTEATVIFVNN  280 (419)
T ss_pred             cccccCCHHHH----HHH-----hhcceEEEEec
Confidence            99998765432    122     24567777753

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=87.36  E-value=4.5  Score=34.84  Aligned_cols=80  Identities=13%  Similarity=0.178  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|+ +|.++..++    ++|.+|+.++.+.+.++.......  .++.++.+|+.+..-....++.+.  ...+
T Consensus         5 ~~~~vlItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   79 (257)
T PRK07067          5 QGKVALLTGA-ASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG--PAAIAVSLDVTRQDSIDRIVAAAV--ERFG   79 (257)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            3567888884 445555554    458899999999887776655443  368888999876543222233221  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.+.
T Consensus        80 ~id~li~~a   88 (257)
T PRK07067         80 GIDILFNNA   88 (257)
T ss_pred             CCCEEEECC
Confidence            678888764

>PRK05993 short chain dehydrogenase; Provisional

Probab=87.33  E-value=4.1  Score=35.73  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=47.5

Q ss_pred             CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++||=.|++ |.++..+    ++.|.+|++++.+++.++....     ..++++.+|+.+.......++.+.. ...+.
T Consensus         4 ~k~vlItGas-ggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~-----~~~~~~~~Dl~d~~~~~~~~~~~~~-~~~g~   76 (277)
T PRK05993          4 KRSILITGCS-SGIGAYCARALQSDGWRVFATCRKEEDVAALEA-----EGLEAFQLDYAEPESIAALVAQVLE-LSGGR   76 (277)
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----CCceEEEccCCCHHHHHHHHHHHHH-HcCCC
Confidence            4678888864 4444444    4458899999999877665432     2577888888764322222222211 12356


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        77 id~li~~A   84 (277)
T PRK05993         77 LDALFNNG   84 (277)
T ss_pred             ccEEEECC
Confidence            89999874

>PRK08251 short chain dehydrogenase; Provisional

Probab=87.29  E-value=4.4  Score=34.56  Aligned_cols=80  Identities=13%  Similarity=0.184  Sum_probs=50.7

Q ss_pred             CEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++|=.|+ +|.++..+++    .+.+|+.++.++..++.....+...   .++.++.+|+.+..--...++.+.  ...
T Consensus         3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   79 (248)
T PRK08251          3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFR--DEL   79 (248)
T ss_pred             CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            56887784 5566665554    4789999999988777665544321   278889999887532222222221  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        80 ~~id~vi~~a   89 (248)
T PRK08251         80 GGLDRVIVNA   89 (248)
T ss_pred             CCCCEEEECC
Confidence            5689998874

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=87.24  E-value=4.6  Score=34.58  Aligned_cols=81  Identities=14%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             CCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +++||=.|. +|.++..+++    .|.+|++++.++...+......... .++.++.+|+.+..--...++.+.  ...+
T Consensus         4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~   80 (258)
T PRK12429          4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAV--ETFG   80 (258)
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            457786664 5666666655    4789999999988776665555433 378899999876432222222221  1224


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|+||.+.
T Consensus        81 ~~d~vi~~a   89 (258)
T PRK12429         81 GVDILVNNA   89 (258)
T ss_pred             CCCEEEECC
Confidence            679998764

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=87.04  E-value=2.1  Score=37.75  Aligned_cols=64  Identities=14%  Similarity=0.244  Sum_probs=43.4

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHcC-------CEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~~-------~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (281)
                      -+.+...++|+|||.|.++.+++..-       ..++.||....-. .+-..+...   ..++=+..|+.++.+.
T Consensus        15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l~   88 (259)
T PF05206_consen   15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDLS   88 (259)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccchh
Confidence            34466789999999999999998752       4899999865333 222223222   2566677788777653

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK07825 short chain dehydrogenase; Provisional

Probab=86.98  E-value=4.3  Score=35.37  Aligned_cols=78  Identities=18%  Similarity=0.135  Sum_probs=49.9

Q ss_pred             CCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ++++|=.|++.| ++..    +++.|.+|+.++.+++.++.+...+.   ++.++.+|+.+..-....++.+.  ...+.
T Consensus         5 ~~~ilVtGasgg-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~--~~~~~   78 (273)
T PRK07825          5 GKVVAITGGARG-IGLATARALAALGARVAIGDLDEALAKETAAELG---LVVGGPLDVTDPASFAAFLDAVE--ADLGP   78 (273)
T ss_pred             CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---cceEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence            568888887544 4444    44558899999999887766554443   57788999876442222233222  22256


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        79 id~li~~a   86 (273)
T PRK07825         79 IDVLVNNA   86 (273)
T ss_pred             CCEEEECC
Confidence            78999874

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=86.94  E-value=1.9  Score=33.05  Aligned_cols=84  Identities=20%  Similarity=0.237  Sum_probs=53.2

Q ss_pred             CccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          151 GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       151 G~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      |.|..+..+++. |++|+++|.++.-++.+++.-..    .++..+-.+  +    .+.+........+|+||-...-..
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~----~~~~~~~~~--~----~~~i~~~~~~~~~d~vid~~g~~~   70 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD----HVIDYSDDD--F----VEQIRELTGGRGVDVVIDCVGSGD   70 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES----EEEETTTSS--H----HHHHHHHTTTSSEEEEEESSSSHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc----ccccccccc--c----ccccccccccccceEEEEecCcHH
Confidence            568889999887 88999999999999998864321    222222221  1    122222133357999998877444


Q ss_pred             cHHHHHHhccCCCCc
Q 023482          230 STDVIKQLLPMGDIF  244 (281)
Q Consensus       230 ~~~~~~~ll~~~~~~  244 (281)
                      .......++++++.+
T Consensus        71 ~~~~~~~~l~~~G~~   85 (130)
T PF00107_consen   71 TLQEAIKLLRPGGRI   85 (130)
T ss_dssp             HHHHHHHHEEEEEEE
T ss_pred             HHHHHHHHhccCCEE
Confidence            445555677766655

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK07074 short chain dehydrogenase; Provisional

Probab=86.67  E-value=5.4  Score=34.30  Aligned_cols=79  Identities=19%  Similarity=0.236  Sum_probs=48.5

Q ss_pred             CEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      +++|=.|++.| ++..    |++.|.+|++++.++.-.+....... ..++.++.+|+.+.......++.+.  ...+.+
T Consensus         3 k~ilItGat~~-iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~~   78 (257)
T PRK07074          3 RTALVTGAAGG-IGQALARRFLAAGDRVLALDIDAAALAAFADALG-DARFVPVACDLTDAASLAAALANAA--AERGPV   78 (257)
T ss_pred             CEEEEECCcch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHH--HHcCCC
Confidence            46777776544 4444    44558899999999877665554442 2368888999877542222222221  122457


Q ss_pred             cEEEEcC
Q 023482          219 AKVVANI  225 (281)
Q Consensus       219 d~Vi~n~  225 (281)
                      |.||.+.
T Consensus        79 d~vi~~a   85 (257)
T PRK07074         79 DVLVANA   85 (257)
T ss_pred             CEEEECC
Confidence            9998865

>PRK08628 short chain dehydrogenase; Provisional

Probab=86.66  E-value=4.6  Score=34.75  Aligned_cols=83  Identities=12%  Similarity=0.089  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|.+ |.++..+    +++|.+|+.++.++...+..+.......++.++.+|+.+..-....++-+.  ...+
T Consensus         6 ~~~~ilItGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   82 (258)
T PRK08628          6 KDKVVIVTGGA-SGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTV--AKFG   82 (258)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HhcC
Confidence            45678888864 4444444    455889999998887663333322222478899999876432222222221  2235


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|.||.|..
T Consensus        83 ~id~vi~~ag   92 (258)
T PRK08628         83 RIDGLVNNAG   92 (258)
T ss_pred             CCCEEEECCc
Confidence            6799998754

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=86.42  E-value=4.7  Score=34.43  Aligned_cols=81  Identities=17%  Similarity=0.270  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++.|.   ++..+++.|.+|+.++.++.  ..+.+..... +++.++.+|+.+..-....++.+.  ...+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   79 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAV--EEFG   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46789988985442   33444445889999998752  2222222222 368899999887543222222221  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        80 ~~d~li~~a   88 (248)
T TIGR01832        80 HIDILVNNA   88 (248)
T ss_pred             CCCEEEECC
Confidence            689999874

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06180 short chain dehydrogenase; Provisional

Probab=86.39  E-value=4.5  Score=35.43  Aligned_cols=80  Identities=16%  Similarity=0.091  Sum_probs=48.7

Q ss_pred             CCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      +++||=.|++.|.   ++..|++.|.+|++++.+++.++......  .+++.++.+|+.+..--...++.+.  ...+.+
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~--~~~~~~   79 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALH--PDRALARLLDVTDFDAIDAVVADAE--ATFGPI   79 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc--CCCeeEEEccCCCHHHHHHHHHHHH--HHhCCC
Confidence            4678888875443   33334445889999999987765544322  1368888899877542222222211  122467


Q ss_pred             cEEEEcC
Q 023482          219 AKVVANI  225 (281)
Q Consensus       219 d~Vi~n~  225 (281)
                      |+||.|.
T Consensus        80 d~vv~~a   86 (277)
T PRK06180         80 DVLVNNA   86 (277)
T ss_pred             CEEEECC
Confidence            9999874

>PRK08324 short chain dehydrogenase; Validated

Probab=86.33  E-value=4.1  Score=41.05  Aligned_cols=84  Identities=18%  Similarity=0.181  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCcc--H-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G--~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+++||=.|++.|  . ++..+++.|.+|+.+|.++..++.+...+....++.++.+|+.+..-....++.+.  ...+.
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~--~~~g~  498 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAA--LAFGG  498 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            4578998886433  2 23333445889999999998877766655433578889999876432222222211  22356


Q ss_pred             ccEEEEcCC
Q 023482          218 FAKVVANIP  226 (281)
Q Consensus       218 ~d~Vi~n~P  226 (281)
                      +|+||.|.-
T Consensus       499 iDvvI~~AG  507 (681)
T PRK08324        499 VDIVVSNAG  507 (681)
T ss_pred             CCEEEECCC
Confidence            899998753

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.24  E-value=4.5  Score=35.18  Aligned_cols=84  Identities=13%  Similarity=0.095  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCc----cH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~----G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++.+|=.|++.    |. ++..+++.|++|+..+.++...+.+++.....+...++.+|+.+..--+..++.+.  ...
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~--~~~   84 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIK--EKW   84 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHH--HHc
Confidence            467888888854    33 44556667899999888753323333222222333456788877543333333322  234


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|++|.|.-
T Consensus        85 g~iDilVnnag   95 (260)
T PRK06603         85 GSFDFLLHGMA   95 (260)
T ss_pred             CCccEEEEccc
Confidence            67899888753

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=86.18  E-value=4.9  Score=34.77  Aligned_cols=83  Identities=8%  Similarity=0.119  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEe-CCHHHHHHHHHHhcC--CCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD-~s~~~l~~a~~~~~~--~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++.|.   ++..+++.|++|+.+. .+++.++...+.+..  ..++.++.+|+.+..-....++.+.  ..
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   84 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID--ED   84 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--Hh
Confidence            46788888876553   4445555688988875 455555544433332  1378899999887543333334332  23


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        85 ~g~id~lv~nA   95 (260)
T PRK08416         85 FDRVDFFISNA   95 (260)
T ss_pred             cCCccEEEECc
Confidence            35789999875

>PRK09186 flagellin modification protein A; Provisional

Probab=86.08  E-value=5.3  Score=34.21  Aligned_cols=82  Identities=21%  Similarity=0.290  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .+++||=.|++. .++..+    ++.|.+|++++.+++.++.+...+..   ...+.++.+|+.+..--...++.+.  .
T Consensus         3 ~~k~vlItGas~-giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~--~   79 (256)
T PRK09186          3 KGKTILITGAGG-LIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSA--E   79 (256)
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHH--H
Confidence            456888888643 344444    44588999999998877766655532   1256778899887432222222221  2


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|+||.|.
T Consensus        80 ~~~~id~vi~~A   91 (256)
T PRK09186         80 KYGKIDGAVNCA   91 (256)
T ss_pred             HcCCccEEEECC
Confidence            235579999874

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=86.08  E-value=6.4  Score=33.62  Aligned_cols=83  Identities=16%  Similarity=0.234  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhh-c
Q 023482          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERR-K  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~-~  213 (281)
                      ++++||=.|+ +|.++..++    +.|.+|++++.+++.++.....+...  .++.++.+|+......+ ..+.+..+ .
T Consensus        11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~   88 (247)
T PRK08945         11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQN-YQQLADTIEE   88 (247)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHH-HHHHHHHHHH
Confidence            6778999985 555555554    44789999999987766655554433  26778888885432211 11111111 2


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|.||.|.
T Consensus        89 ~~~~id~vi~~A  100 (247)
T PRK08945         89 QFGRLDGVLHNA  100 (247)
T ss_pred             HhCCCCEEEECC
Confidence            235689998864

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.00  E-value=4.5  Score=35.56  Aligned_cols=83  Identities=17%  Similarity=0.100  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++.+|=.|.+    .|. ++..+++.|++|+.+..++...+.+++.....+...++.+|+.+..--...++.+.  ...
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~   86 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLE--KKW   86 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHH--Hhc
Confidence            45788888974    444 34455556889988876643333333322222345567888876543333333332  234


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        87 g~iD~lv~nA   96 (272)
T PRK08159         87 GKLDFVVHAI   96 (272)
T ss_pred             CCCcEEEECC
Confidence            6789999874

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=85.94  E-value=2.3  Score=33.87  Aligned_cols=81  Identities=15%  Similarity=0.178  Sum_probs=51.2

Q ss_pred             EEEEEcCCccH---HHHHHHHcCC-EEEEEeCC--HHHHHHHHHHhc-CCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          144 IVLEIGPGTGS---LTNVLLNAGA-TVLAIEKD--QHMVGLVRERFA-SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       144 ~VLDiGcG~G~---~t~~la~~~~-~v~gvD~s--~~~l~~a~~~~~-~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++|=.|++.|.   ++..+++.+. +|+.+..+  .+..+.....++ ...++.++.+|+.+..-....++.+.  ...+
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   79 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI--KRFG   79 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH--HHHS
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence            56777776554   3444455544 88999998  566665554444 23589999999887543333334332  2446


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|++|.|..
T Consensus        80 ~ld~li~~ag   89 (167)
T PF00106_consen   80 PLDILINNAG   89 (167)
T ss_dssp             SESEEEEECS
T ss_pred             cccccccccc
Confidence            7999998743

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06701 short chain dehydrogenase; Provisional

Probab=85.93  E-value=4.7  Score=35.81  Aligned_cols=83  Identities=13%  Similarity=0.179  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCH-HHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ-HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~-~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++.|.   ++..+++.|.+|+.++.++ ...+.....+... .++.++.+|+.+....+..++.+.  ...
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~--~~~  122 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETV--REL  122 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            46788988865443   3334445688999998874 2333333333332 368889999877543333333221  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|+||.|.
T Consensus       123 ~~iD~lI~~A  132 (290)
T PRK06701        123 GRLDILVNNA  132 (290)
T ss_pred             CCCCEEEECC
Confidence            5679998764

>PRK06182 short chain dehydrogenase; Validated

Probab=85.90  E-value=4.9  Score=35.05  Aligned_cols=78  Identities=12%  Similarity=0.096  Sum_probs=49.0

Q ss_pred             CCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++||=.|++ |.++..++    +.|.+|++++.+++.++....     .+++++.+|+.+.......++.+.  ...+.
T Consensus         3 ~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~--~~~~~   74 (273)
T PRK06182          3 KKVALVTGAS-SGIGKATARRLAAQGYTVYGAARRVDKMEDLAS-----LGVHPLSLDVTDEASIKAAVDTII--AEEGR   74 (273)
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----CCCeEEEeeCCCHHHHHHHHHHHH--HhcCC
Confidence            4678888854 44555554    448899999999876644322     257888999877543322233221  22357


Q ss_pred             ccEEEEcCCC
Q 023482          218 FAKVVANIPF  227 (281)
Q Consensus       218 ~d~Vi~n~P~  227 (281)
                      .|++|.|..+
T Consensus        75 id~li~~ag~   84 (273)
T PRK06182         75 IDVLVNNAGY   84 (273)
T ss_pred             CCEEEECCCc
Confidence            8999988643

>PRK07102 short chain dehydrogenase; Provisional

Probab=85.83  E-value=4.9  Score=34.29  Aligned_cols=77  Identities=13%  Similarity=0.181  Sum_probs=46.6

Q ss_pred             CEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~--~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++|+=.|+ +|.++..++    +.|.+|++++.+++-.+...+....  .++++++.+|+.+..--   .+.+..  ...
T Consensus         2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~~~~--~~~   75 (243)
T PRK07102          2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASH---AAFLDS--LPA   75 (243)
T ss_pred             cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHH---HHHHHH--Hhh
Confidence            36777774 455555544    4588999999998766554444322  24889999998874321   112211  112


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      .+|.+|.|.
T Consensus        76 ~~d~vv~~a   84 (243)
T PRK07102         76 LPDIVLIAV   84 (243)
T ss_pred             cCCEEEECC
Confidence            468888764

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=85.82  E-value=9  Score=34.15  Aligned_cols=44  Identities=34%  Similarity=0.530  Sum_probs=35.5

Q ss_pred             cCCCCCEEEEEcCC-ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Q 023482          138 AVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (281)
Q Consensus       138 ~~~~~~~VLDiGcG-~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~  181 (281)
                      .+.++.+||..|+| .|..+..+++. |.+|++++.+++..+.+++
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~  207 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE  207 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            45677889888876 47777778776 7899999999998888755

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=85.70  E-value=5.2  Score=34.42  Aligned_cols=81  Identities=14%  Similarity=0.102  Sum_probs=48.7

Q ss_pred             CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcC-C--CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~-~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      +++||=.|.+ |.++..+    ++.|.+|+.++.++...+.....+.. .  .++.++.+|+.+...-...++.+.  ..
T Consensus         2 ~k~ilItG~~-~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~   78 (259)
T PRK12384          2 NQVAVVIGGG-QTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVD--EI   78 (259)
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHH--HH
Confidence            3568888854 5544444    45588999999998766555444322 1  368889999876432211222211  22


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|.||.|.
T Consensus        79 ~~~id~vv~~a   89 (259)
T PRK12384         79 FGRVDLLVYNA   89 (259)
T ss_pred             cCCCCEEEECC
Confidence            35678888864

>PRK06940 short chain dehydrogenase; Provisional

Probab=85.64  E-value=5.3  Score=35.09  Aligned_cols=79  Identities=13%  Similarity=0.208  Sum_probs=49.6

Q ss_pred             CEEEEEcCCccHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          143 DIVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~---~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      +.+|=-|+  |.++..+++   .|.+|+.++.++.-++.+.+.+...+ ++.++.+|+.+..--...++.+   ...+..
T Consensus         3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~---~~~g~i   77 (275)
T PRK06940          3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATA---QTLGPV   77 (275)
T ss_pred             CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH---HhcCCC
Confidence            34555564  356666655   37899999999877766555544333 6888899987754322223322   223578


Q ss_pred             cEEEEcCC
Q 023482          219 AKVVANIP  226 (281)
Q Consensus       219 d~Vi~n~P  226 (281)
                      |++|.|.-
T Consensus        78 d~li~nAG   85 (275)
T PRK06940         78 TGLVHTAG   85 (275)
T ss_pred             CEEEECCC
Confidence            99998753

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=85.59  E-value=1.9  Score=41.58  Aligned_cols=60  Identities=20%  Similarity=0.433  Sum_probs=46.2

Q ss_pred             CEEEEEcCCccHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHh-cCC-CCeEEEEcCccccccc
Q 023482          143 DIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERF-ASI-DQLKVLQEDFVKCHIR  202 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~------~~~v~gvD~s~~~l~~a~~~~-~~~-~~v~~~~gD~~~~~~~  202 (281)
                      ..|+=+|.|-|-+.....+.      ..++++||.+|.++-..+... ... ++|+++.+|+.+++.+
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap  436 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAP  436 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCc
Confidence            36889999999987666543      348999999999998776532 222 4899999999998743

>PRK05875 short chain dehydrogenase; Provisional

Probab=85.51  E-value=6.2  Score=34.35  Aligned_cols=82  Identities=13%  Similarity=0.180  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      +++++|=.|++ |.++..++    +.|.+|++++.+++..+...+.+...   .++.++.+|+.+.......++.+.  .
T Consensus         6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~   82 (276)
T PRK05875          6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAAT--A   82 (276)
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHH--H
Confidence            35788988864 34444444    45889999999877665544443321   378888999876432111122111  2


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|++|.|.
T Consensus        83 ~~~~~d~li~~a   94 (276)
T PRK05875         83 WHGRLHGVVHCA   94 (276)
T ss_pred             HcCCCCEEEECC
Confidence            234679998764

>PRK06914 short chain dehydrogenase; Provisional

Probab=85.50  E-value=6.3  Score=34.40  Aligned_cols=80  Identities=16%  Similarity=0.152  Sum_probs=49.6

Q ss_pred             CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      ++++|=.|++ |.++..+    +++|.+|++++.+++-.+........   ..++.++.+|+.+...... ++.+.  ..
T Consensus         3 ~k~~lItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~--~~   78 (280)
T PRK06914          3 KKIAIVTGAS-SGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVL--KE   78 (280)
T ss_pred             CCEEEEECCC-chHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHH--Hh
Confidence            4578888854 3444444    44588999999988776655443332   1378899999987532222 22221  22


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|.||.+.
T Consensus        79 ~~~id~vv~~a   89 (280)
T PRK06914         79 IGRIDLLVNNA   89 (280)
T ss_pred             cCCeeEEEECC
Confidence            35679888874

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.42  E-value=5.5  Score=34.44  Aligned_cols=81  Identities=12%  Similarity=0.188  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|.+    .|. ++..+++.|.+|+.++.++...+.+++...  .++.++.+|+.+..--+..++.+.  ...
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~--~~~   81 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVD--EEDLLVECDVASDESIERAFATIK--ERV   81 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhcc--CceeEEeCCCCCHHHHHHHHHHHH--HHh
Confidence            46788888875    333 444555568899999887554433333221  367888899876443333333332  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        82 g~iD~lv~nA   91 (252)
T PRK06079         82 GKIDGIVHAI   91 (252)
T ss_pred             CCCCEEEEcc
Confidence            6789999874

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=85.37  E-value=4.9  Score=37.99  Aligned_cols=89  Identities=18%  Similarity=0.149  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHhcCC--CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 023482          126 NSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~  199 (281)
                      .++-...+...+...  ...+|+=+|+  |.++..+++    .+.+|+.+|.+++.++.++....   ++.++.||+.+.
T Consensus       213 ~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~---~~~~i~gd~~~~  287 (453)
T PRK09496        213 AREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP---NTLVLHGDGTDQ  287 (453)
T ss_pred             CHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC---CCeEEECCCCCH
Confidence            344445555444322  2467887776  566655554    37799999999999888776542   577899998754


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCC
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPF  227 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~  227 (281)
                      ..       +.. .....+|.|+.-.+-
T Consensus       288 ~~-------L~~-~~~~~a~~vi~~~~~  307 (453)
T PRK09496        288 EL-------LEE-EGIDEADAFIALTND  307 (453)
T ss_pred             HH-------HHh-cCCccCCEEEECCCC
Confidence            21       100 122456777765553

>PRK06057 short chain dehydrogenase; Provisional

Probab=85.36  E-value=5.2  Score=34.45  Aligned_cols=78  Identities=13%  Similarity=0.135  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++. .++..+    ++.|.+|+.++.++.-.+...+.+.    ..++.+|..+....+..++.+.  ...+
T Consensus         6 ~~~~vlItGasg-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~D~~~~~~~~~~~~~~~--~~~~   78 (255)
T PRK06057          6 AGRVAVITGGGS-GIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG----GLFVPTDVTDEDAVNALFDTAA--ETYG   78 (255)
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC----CcEEEeeCCCHHHHHHHHHHHH--HHcC
Confidence            467899999854 444444    4458899999999876655544432    2467778776432222222221  1225


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|.||.|.
T Consensus        79 ~id~vi~~a   87 (255)
T PRK06057         79 SVDIAFNNA   87 (255)
T ss_pred             CCCEEEECC
Confidence            678888764

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=85.11  E-value=1.6  Score=37.90  Aligned_cols=55  Identities=13%  Similarity=0.170  Sum_probs=38.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF  183 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~  183 (281)
                      ++..+.+.++.....+++|+-||+|..+..+...+..|+.-|+++..+...+..+
T Consensus         8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l   62 (260)
T PF02086_consen    8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVL   62 (260)
T ss_dssp             GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHH
Confidence            4566666666435679999999999999888777889999999998887776333

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=85.05  E-value=7  Score=35.15  Aligned_cols=82  Identities=16%  Similarity=0.206  Sum_probs=51.6

Q ss_pred             CCEEEEEcCCccH---HHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGS---LTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++++|=.|++.|.   ++..+++.| .+|+.+..+++..+.+.+.+... .++.++.+|+.+..-....++.+.  ...+
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~   80 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFR--ESGR   80 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHH--HhCC
Confidence            4577878866543   344455568 89999999887776665555422 367888889877543333333321  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        81 ~iD~lI~nA   89 (314)
T TIGR01289        81 PLDALVCNA   89 (314)
T ss_pred             CCCEEEECC
Confidence            689999874

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PTZ00357 methyltransferase; Provisional

Probab=85.03  E-value=2.9  Score=41.81  Aligned_cols=79  Identities=24%  Similarity=0.329  Sum_probs=50.3

Q ss_pred             EEEEEcCCccHHHHHHHHc----C--CEEEEEeCCHHHHHHHHHHh---cCCC--------CeEEEEcCccccccccc--
Q 023482          144 IVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERF---ASID--------QLKVLQEDFVKCHIRSH--  204 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~----~--~~v~gvD~s~~~l~~a~~~~---~~~~--------~v~~~~gD~~~~~~~d~--  204 (281)
                      .|+=+|+|-|-+.....+.    +  .+|++||.|+..+.....+.   ....        .|+++..|+.++..+..  
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999976555442    2  48999999977554444432   2222        48999999999854310  


Q ss_pred             hhhHHHhhcCCCCccEEEEcC
Q 023482          205 MLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      +... .  ...+++|+||+-+
T Consensus       783 s~~~-P--~~~gKaDIVVSEL  800 (1072)
T PTZ00357        783 SLTL-P--ADFGLCDLIVSEL  800 (1072)
T ss_pred             cccc-c--ccccccceehHhh
Confidence            0000 0  1124789999854

>PRK05855 short chain dehydrogenase; Validated

Probab=84.95  E-value=5.2  Score=38.76  Aligned_cols=81  Identities=16%  Similarity=0.149  Sum_probs=52.2

Q ss_pred             CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +.++|=+|+ +|.++..+    ++.|.+|+.++.++..++.+.+.+... .++.++.+|+.+..-....++.+.  ...+
T Consensus       315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g  391 (582)
T PRK05855        315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVR--AEHG  391 (582)
T ss_pred             CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HhcC
Confidence            457887776 44444444    445889999999988777665555433 378899999887543322333322  2335


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus       392 ~id~lv~~A  400 (582)
T PRK05855        392 VPDIVVNNA  400 (582)
T ss_pred             CCcEEEECC
Confidence            689999874

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=84.94  E-value=8.6  Score=36.06  Aligned_cols=85  Identities=18%  Similarity=0.168  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCccHHHH-----HHHHcCCEEEEEeCCHHHHH------------HHHHHhcCCC-CeEEEEcCccccccc
Q 023482          141 EGDIVLEIGPGTGSLTN-----VLLNAGATVLAIEKDQHMVG------------LVRERFASID-QLKVLQEDFVKCHIR  202 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~-----~la~~~~~v~gvD~s~~~l~------------~a~~~~~~~~-~v~~~~gD~~~~~~~  202 (281)
                      .++++|=.|+.+|.-..     .+ ..|+++++++...+..+            ...+.....+ .+..+.+|+.+-.-.
T Consensus        40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v  118 (398)
T PRK13656         40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIK  118 (398)
T ss_pred             CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence            45799999998877333     44 56889999985432111            1222222223 567889999876544


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +..++.+.  ...+..|++|.|.-+.
T Consensus       119 ~~lie~I~--e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        119 QKVIELIK--QDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHH--HhcCCCCEEEECCccC
Confidence            44555543  2347799999986554

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.76  E-value=7.1  Score=34.93  Aligned_cols=133  Identities=16%  Similarity=0.196  Sum_probs=83.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--C-CeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~-~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .++.|+==||-+|.   ++..+++.|++++-+-...+-++...+.+.+.  . ++.++.+|+.+...-...++++.  ..
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~--~~   88 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAI--RH   88 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHH--Hh
Confidence            56788888887775   55666777888777777777776664443322  2 59999999999876665666654  45


Q ss_pred             CCCccEEEEcCCCcc-------cHHHHH-------------------HhccCCCCcceEEEeehhhHHHHhcCCCCCCCc
Q 023482          215 SSGFAKVVANIPFNI-------STDVIK-------------------QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSE  268 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~-------~~~~~~-------------------~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~  268 (281)
                      .+..|+.|.|-=+..       ....++                   .+.+.+    ..........+.++  +.|...-
T Consensus        89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~----~GhIVvisSiaG~~--~~P~~~~  162 (282)
T KOG1205|consen   89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN----DGHIVVISSIAGKM--PLPFRSI  162 (282)
T ss_pred             cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC----CCeEEEEecccccc--CCCcccc
Confidence            678899998843221       111111                   333332    12222334444454  3666678


Q ss_pred             cchhhhhhhhccC
Q 023482          269 YRPINIFVNFYSG  281 (281)
Q Consensus       269 y~~~s~l~~~~~~  281 (281)
                      |.+-...++.||+
T Consensus       163 Y~ASK~Al~~f~e  175 (282)
T KOG1205|consen  163 YSASKHALEGFFE  175 (282)
T ss_pred             cchHHHHHHHHHH
Confidence            9888888887764

>PLN02780 ketoreductase/ oxidoreductase

Probab=84.76  E-value=6.6  Score=35.54  Aligned_cols=58  Identities=22%  Similarity=0.334  Sum_probs=41.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~  198 (281)
                      .++.+|=.|++.|.   ++..+++.|.+|+.++.+++.++...+.+...   .++..+..|+.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~  115 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG  115 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence            36789999976653   55555666889999999999887776655432   256777778763

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=84.76  E-value=7.3  Score=33.99  Aligned_cols=81  Identities=17%  Similarity=0.236  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh-cCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR-KSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~-~~~~  216 (281)
                      .++.+|==|..+|.   .+..|++.|.+|+.+....+.++.....+.. +.+..+..|+.+..--+   ..+..+ ...+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-~~~~~~~~DVtD~~~~~---~~i~~~~~~~g   80 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-GAALALALDVTDRAAVE---AAIEALPEEFG   80 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-CceEEEeeccCCHHHHH---HHHHHHHHhhC
Confidence            34567777776665   5566677799999999999999998888875 57888888888753211   112111 3457


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|-
T Consensus        81 ~iDiLvNNA   89 (246)
T COG4221          81 RIDILVNNA   89 (246)
T ss_pred             cccEEEecC
Confidence            799999883

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=84.74  E-value=5.1  Score=34.54  Aligned_cols=80  Identities=19%  Similarity=0.204  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++.+|=.|+.. .++..+    ++.|++|++++.++.  +...+.+... .++.++.+|+.+..-.+..++-+.  ...
T Consensus         9 ~~k~~lItG~~~-gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   83 (253)
T PRK08993          9 EGKVAVVTGCDT-GLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAV--AEF   83 (253)
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHh
Confidence            467888888754 444444    445889999987642  1222222222 367888888876432222233221  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        84 ~~~D~li~~A   93 (253)
T PRK08993         84 GHIDILVNNA   93 (253)
T ss_pred             CCCCEEEECC
Confidence            5689999875

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=84.72  E-value=2.3  Score=36.37  Aligned_cols=69  Identities=16%  Similarity=0.173  Sum_probs=43.3

Q ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC-CCccEEEEcC
Q 023482          155 LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS-SGFAKVVANI  225 (281)
Q Consensus       155 ~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~-~~~d~Vi~n~  225 (281)
                      ++..+++.|++|+.++.+++.++.+.+.+......+++.+|+.+-.--+..++.+.  ... +..|++|.|.
T Consensus        12 ia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~~g~iD~lV~~a   81 (241)
T PF13561_consen   12 IARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAV--ERFGGRIDILVNNA   81 (241)
T ss_dssp             HHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHH--HHHCSSESEEEEEE
T ss_pred             HHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHH--hhcCCCeEEEEecc
Confidence            44555666999999999999864444333322234579999876544333444432  233 7889988763

...

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=84.46  E-value=10  Score=33.56  Aligned_cols=85  Identities=14%  Similarity=0.282  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-C-CeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+.++|=-|.-.|.   ++..+|++|.+++.|-.+++-++...+.+... + .+.++..|..+..-....++.+.  ...
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~--~~~   82 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELK--ERG   82 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHH--hcC
Confidence            45678877776554   56666777999999999999998888877643 2 78899999888654333343332  223


Q ss_pred             CCccEEEEcCCC
Q 023482          216 SGFAKVVANIPF  227 (281)
Q Consensus       216 ~~~d~Vi~n~P~  227 (281)
                      ...|++|-|-=|
T Consensus        83 ~~IdvLVNNAG~   94 (265)
T COG0300          83 GPIDVLVNNAGF   94 (265)
T ss_pred             CcccEEEECCCc
Confidence            578988887544

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.45  E-value=4.7  Score=34.96  Aligned_cols=81  Identities=20%  Similarity=0.242  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCC-ccHHHHH----HHHcCCEEEEEeCCH--HHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPG-TGSLTNV----LLNAGATVLAIEKDQ--HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG-~G~~t~~----la~~~~~v~gvD~s~--~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .++++|=.|.| ++.++..    +++.|++|+.++.++  +.++.....+.  .++.++.+|+.+..--+..++.+.  .
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~--~   81 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP--EPAPVLELDVTNEEHLASLADRVR--E   81 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC--CCCcEEeCCCCCHHHHHHHHHHHH--H
Confidence            46789999983 3444444    444588999998763  44444444332  256788888877543333333332  2


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|++|.|.
T Consensus        82 ~~g~iD~li~nA   93 (256)
T PRK07889         82 HVDGLDGVVHSI   93 (256)
T ss_pred             HcCCCcEEEEcc
Confidence            336789999874

>TIGR02415 23BDH acetoin reductases

Probab=84.43  E-value=7.8  Score=33.12  Aligned_cols=80  Identities=11%  Similarity=0.114  Sum_probs=48.1

Q ss_pred             EEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          144 IVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      ++|=.|+ +|.++..+    ++.|.+|+.++.++..++...+.+... .++.++.+|+.+.......++.+.  ...+..
T Consensus         2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~--~~~~~i   78 (254)
T TIGR02415         2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAA--EKFGGF   78 (254)
T ss_pred             EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcCCC
Confidence            4666774 45555554    445889999999877666555444433 378899999876432111122211  223467


Q ss_pred             cEEEEcCC
Q 023482          219 AKVVANIP  226 (281)
Q Consensus       219 d~Vi~n~P  226 (281)
                      |++|.|..
T Consensus        79 d~vi~~ag   86 (254)
T TIGR02415        79 DVMVNNAG   86 (254)
T ss_pred             CEEEECCC
Confidence            88988754

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=84.42  E-value=4  Score=35.74  Aligned_cols=78  Identities=22%  Similarity=0.261  Sum_probs=62.0

Q ss_pred             EEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC
Q 023482          146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       146 LDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      |..-||+-.++..+....-++.+.|+.+.=....++++....++++.++|.....-.        .+.++..--.|+.+|
T Consensus        93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a--------~LPP~erRglVLIDP  164 (279)
T COG2961          93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKA--------HLPPKERRGLVLIDP  164 (279)
T ss_pred             cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhh--------hCCCCCcceEEEeCC
Confidence            889999999999988877799999999999999999998767999999997653211        112334456788899


Q ss_pred             CCcccH
Q 023482          226 PFNIST  231 (281)
Q Consensus       226 P~~~~~  231 (281)
                      ||....
T Consensus       165 PfE~~~  170 (279)
T COG2961         165 PFELKD  170 (279)
T ss_pred             Cccccc
Confidence            997655

>KOG3350 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.39  E-value=19  Score=29.94  Aligned_cols=106  Identities=20%  Similarity=0.177  Sum_probs=61.8

Q ss_pred             cCccccCCHHHHHHHHHHh--cCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482          119 LGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (281)
Q Consensus       119 ~g~~~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~  193 (281)
                      +.| |.-.++.+..++...  ....+.+|-=|.|-+=+.-......   ..+|+-+|.+...-...         -+|+.
T Consensus        50 lsq-fwy~~eta~~La~e~v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg---------~eFvf  119 (217)
T KOG3350|consen   50 LSQ-FWYSDETARKLAAERVEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYG---------TEFVF  119 (217)
T ss_pred             hhh-hhcCHHHHHHHHHHHHhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHHhcc---------ceeEE
Confidence            344 555666666665543  2234556777766664422222222   34899999997654433         35777


Q ss_pred             cCcccc-ccccchhhHHHhhcCCCCccEEEEcCCCcc------cHHHHHHhccCCCC
Q 023482          194 EDFVKC-HIRSHMLSLFERRKSSSGFAKVVANIPFNI------STDVIKQLLPMGDI  243 (281)
Q Consensus       194 gD~~~~-~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~------~~~~~~~ll~~~~~  243 (281)
                      -|...- ++++    .+     ...||+||++|||-.      ....++.|.++...
T Consensus       120 YDyN~p~dlp~----~l-----k~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~k  167 (217)
T KOG3350|consen  120 YDYNCPLDLPD----EL-----KAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKK  167 (217)
T ss_pred             eccCCCCCCHH----HH-----HhcccEEEeCCccccchhhhhhHHHHHHHhcCCce
Confidence            776542 2222    11     256999999999933      34566777766543

>PRK07806 short chain dehydrogenase; Provisional

Probab=84.30  E-value=7.5  Score=33.13  Aligned_cols=82  Identities=15%  Similarity=0.184  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCH-HHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQ-HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~-~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .++++|-.|+. |.++..++    +.|.+|+++..+. ...+.....+... .++.++.+|+.+..-....++.+.  ..
T Consensus         5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   81 (248)
T PRK07806          5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAR--EE   81 (248)
T ss_pred             CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--Hh
Confidence            45688988863 33444443    4588999988764 3333333333322 368889999877432222222211  12


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        82 ~~~~d~vi~~a   92 (248)
T PRK07806         82 FGGLDALVLNA   92 (248)
T ss_pred             CCCCcEEEECC
Confidence            24678888775

>PRK05599 hypothetical protein; Provisional

Probab=84.27  E-value=6.5  Score=33.82  Aligned_cols=79  Identities=10%  Similarity=0.128  Sum_probs=50.4

Q ss_pred             EEEEEcCCccHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          144 IVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~---~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      .+|=.|++.|. +..++.   .+.+|+.++.+++-++.+.+.+...+  .+.++.+|+.+..--...++.+.  ...+..
T Consensus         2 ~vlItGas~GI-G~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~i   78 (246)
T PRK05599          2 SILILGGTSDI-AGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQ--ELAGEI   78 (246)
T ss_pred             eEEEEeCccHH-HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHH--HhcCCC
Confidence            46667776554 444433   37899999999888877766665433  47888999887543333333332  223678


Q ss_pred             cEEEEcC
Q 023482          219 AKVVANI  225 (281)
Q Consensus       219 d~Vi~n~  225 (281)
                      |++|.|.
T Consensus        79 d~lv~na   85 (246)
T PRK05599         79 SLAVVAF   85 (246)
T ss_pred             CEEEEec
Confidence            9888764

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=84.23  E-value=4.6  Score=39.78  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=50.7

Q ss_pred             HhcCCCCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcC----------CCCeEEEEcCcccccc
Q 023482          136 AAAVQEGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS----------IDQLKVLQEDFVKCHI  201 (281)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~----------~~~v~~~~gD~~~~~~  201 (281)
                      .++.+.+++||=.|+ +|.++..++    +.|.+|++++.+.+-++.....+..          ..++.++.+|+.+...
T Consensus        74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es  152 (576)
T PLN03209         74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ  152 (576)
T ss_pred             ccccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence            334457778888876 455565554    3488999999998776654433211          1268899999986431


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcC
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                            +.   ...+..|+||.+.
T Consensus       153 ------I~---~aLggiDiVVn~A  167 (576)
T PLN03209        153 ------IG---PALGNASVVICCI  167 (576)
T ss_pred             ------HH---HHhcCCCEEEEcc
Confidence                  11   1124578888874

>PRK06841 short chain dehydrogenase; Provisional

Probab=84.11  E-value=7.8  Score=33.19  Aligned_cols=82  Identities=12%  Similarity=0.189  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+++||=.|++.|.   ++..+++.|.+|+.++.++...+.+....  ..++.++.+|+.+..-....++.+.  ...+.
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~   89 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLL--GGNAKGLVCDVSDSQSVEAAVAAVI--SAFGR   89 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhh--CCceEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence            46788988865443   33444556889999999987544443321  1367788888876532222233221  12356


Q ss_pred             ccEEEEcCC
Q 023482          218 FAKVVANIP  226 (281)
Q Consensus       218 ~d~Vi~n~P  226 (281)
                      .|.+|.|.-
T Consensus        90 ~d~vi~~ag   98 (255)
T PRK06841         90 IDILVNSAG   98 (255)
T ss_pred             CCEEEECCC
Confidence            899998753

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.96  E-value=6.6  Score=34.09  Aligned_cols=82  Identities=16%  Similarity=0.143  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCC---HHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKD---QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s---~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      .++++|=.|.+    .|. ++..+++.|++|+.++.+   ++.++...+... .+++.++.+|+.+..-.+..++.+.  
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~--   82 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIK--   82 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHH--
Confidence            46789999975    333 334445568899988654   334444443332 2467888899877543333333332  


Q ss_pred             cCCCCccEEEEcC
Q 023482          213 KSSSGFAKVVANI  225 (281)
Q Consensus       213 ~~~~~~d~Vi~n~  225 (281)
                      ...+..|++|.|.
T Consensus        83 ~~~g~ld~lv~na   95 (257)
T PRK08594         83 EEVGVIHGVAHCI   95 (257)
T ss_pred             HhCCCccEEEECc
Confidence            2336789988764

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=83.88  E-value=2.2  Score=33.87  Aligned_cols=50  Identities=20%  Similarity=0.281  Sum_probs=30.6

Q ss_pred             EEcCCcc--HHHHHHH--Hc--CCEEEEEeCCHHHHHHHHHH--hcCC---CCeEEEEcCc
Q 023482          147 EIGPGTG--SLTNVLL--NA--GATVLAIEKDQHMVGLVRER--FASI---DQLKVLQEDF  196 (281)
Q Consensus       147 DiGcG~G--~~t~~la--~~--~~~v~gvD~s~~~l~~a~~~--~~~~---~~v~~~~gD~  196 (281)
                      |||+..|  ..+..+.  ..  +.+|+++|.++..++..+.+  +.-+   +.+++.....
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~   61 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV   61 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence            8999999  6666554  22  56999999999999999888  3322   2455555443

; PDB: 2PY6_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=83.87  E-value=3.3  Score=38.41  Aligned_cols=48  Identities=29%  Similarity=0.403  Sum_probs=39.7

Q ss_pred             HHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHH
Q 023482          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~  182 (281)
                      ....+.++.+||.+|||. |..+..+++. +. +++++|.+++..+.+++.
T Consensus       178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            344566788999999988 8888888887 65 699999999999988875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK06198 short chain dehydrogenase; Provisional

Probab=83.80  E-value=6.5  Score=33.77  Aligned_cols=82  Identities=11%  Similarity=0.193  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCccHHHHHHH----HcCCE-EEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGSLTNVLL----NAGAT-VLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~-v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++ |.++..++    +.|.+ |+.++.+++-.......+... .++.++.+|+.+.......++.+.  ..
T Consensus         5 ~~k~vlItGa~-g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   81 (260)
T PRK06198          5 DGKVALVTGGT-QGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAAD--EA   81 (260)
T ss_pred             CCcEEEEeCCC-chHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HH
Confidence            45788888864 44555444    44777 999999876665444444322 367888899876443222333221  12


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|.+|.+.
T Consensus        82 ~g~id~li~~a   92 (260)
T PRK06198         82 FGRLDALVNAA   92 (260)
T ss_pred             hCCCCEEEECC
Confidence            24678888864

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=83.73  E-value=4.7  Score=40.03  Aligned_cols=69  Identities=19%  Similarity=0.207  Sum_probs=46.2

Q ss_pred             EEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          144 IVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      +|+=  ||.|..+..+++    .+.+++.+|.|++.++.+++.     ...++.||+.+...-       .. ..-+..+
T Consensus       402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L-------~~-agi~~A~  466 (601)
T PRK03659        402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQLELL-------RA-AGAEKAE  466 (601)
T ss_pred             CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHH-------Hh-cCCccCC
Confidence            4554  556666666654    377999999999999988752     467999999875421       11 2234567


Q ss_pred             EEEEcCCC
Q 023482          220 KVVANIPF  227 (281)
Q Consensus       220 ~Vi~n~P~  227 (281)
                      .++...+-
T Consensus       467 ~vv~~~~d  474 (601)
T PRK03659        467 AIVITCNE  474 (601)
T ss_pred             EEEEEeCC
Confidence            77775554

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=83.57  E-value=3.3  Score=37.18  Aligned_cols=48  Identities=21%  Similarity=0.311  Sum_probs=40.6

Q ss_pred             hcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Q 023482          137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      +....+.+|.-||+|-......++..-++|.+||+++.-++..+.++.
T Consensus        59 m~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkla  106 (414)
T COG5379          59 MQLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLA  106 (414)
T ss_pred             HhcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence            344578899999999988888888888899999999999987776654

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=83.52  E-value=1.1  Score=42.61  Aligned_cols=75  Identities=23%  Similarity=0.248  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhc---
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRK---  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~---  213 (281)
                      .+..+|=+|-|.|.+...+-..  ..++++||++|.+++.|.+++.-..  +.+++-.|..+        ++-....   
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~--------~~~~~~k~~~  366 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLD--------FLQRTAKSQQ  366 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchH--------HHHHHhhccc
Confidence            3456888888889988877655  4699999999999999999876321  33444444433        2222211   


Q ss_pred             CCCCccEEEE
Q 023482          214 SSSGFAKVVA  223 (281)
Q Consensus       214 ~~~~~d~Vi~  223 (281)
                      ....||+++.
T Consensus       367 ~~~~~dvl~~  376 (482)
T KOG2352|consen  367 EDICPDVLMV  376 (482)
T ss_pred             cccCCcEEEE
Confidence            3456888876

>PRK08278 short chain dehydrogenase; Provisional

Probab=83.48  E-value=5.9  Score=34.66  Aligned_cols=84  Identities=15%  Similarity=0.148  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHH-------HHHHHHHhcCC-CCeEEEEcCccccccccchhhHH
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHM-------VGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~-------l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      .++++|=.|++.|.   ++..+++.|.+|+.++.+...       ++.+.+.+... .++.++.+|+.+..--...++.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~   84 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA   84 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence            45688888876543   334445568899999986531       22233333322 37888999987754322222222


Q ss_pred             HhhcCCCCccEEEEcCC
Q 023482          210 ERRKSSSGFAKVVANIP  226 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P  226 (281)
                      .  ...+..|++|.|..
T Consensus        85 ~--~~~g~id~li~~ag   99 (273)
T PRK08278         85 V--ERFGGIDICVNNAS   99 (273)
T ss_pred             H--HHhCCCCEEEECCC
Confidence            1  22256899988743

>PRK06114 short chain dehydrogenase; Provisional

Probab=83.13  E-value=8.2  Score=33.19  Aligned_cols=83  Identities=13%  Similarity=0.145  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCH-HHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQ-HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~-~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .++++|=.|.+ |.++..+++    .|++|+.++.+. ..++.+.+.+... .++.++.+|+.+..-....++.+.  ..
T Consensus         7 ~~k~~lVtG~s-~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~   83 (254)
T PRK06114          7 DGQVAFVTGAG-SGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTE--AE   83 (254)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HH
Confidence            46688888854 445555544    488999999864 3334443334332 378888899876432222222221  23


Q ss_pred             CCCccEEEEcCC
Q 023482          215 SSGFAKVVANIP  226 (281)
Q Consensus       215 ~~~~d~Vi~n~P  226 (281)
                      .+..|.+|.|.-
T Consensus        84 ~g~id~li~~ag   95 (254)
T PRK06114         84 LGALTLAVNAAG   95 (254)
T ss_pred             cCCCCEEEECCC
Confidence            366899998753

>PRK12743 oxidoreductase; Provisional

Probab=83.07  E-value=8.4  Score=33.19  Aligned_cols=81  Identities=11%  Similarity=0.049  Sum_probs=48.2

Q ss_pred             CCEEEEEcCCccHHHHHHHH----cCCEEEEEe-CCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIE-KDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~----~~~~v~gvD-~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++||=.|++ |.++..+++    .|.+|+.+. .+++..+.+....... .++.++.+|+.+..-....++.+.  ...
T Consensus         2 ~k~vlItGas-~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~   78 (256)
T PRK12743          2 AQVAIVTASD-SGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLI--QRL   78 (256)
T ss_pred             CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            3578888865 445555554    488988875 4555555554444433 378899999877542222222221  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|.+|.|.
T Consensus        79 ~~id~li~~a   88 (256)
T PRK12743         79 GRIDVLVNNA   88 (256)
T ss_pred             CCCCEEEECC
Confidence            5679999875

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=82.96  E-value=5.8  Score=41.85  Aligned_cols=92  Identities=16%  Similarity=0.158  Sum_probs=60.2

Q ss_pred             CCEEEEEcCC-ccHHHH-HHHHc-CCE-------------EEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccch
Q 023482          142 GDIVLEIGPG-TGSLTN-VLLNA-GAT-------------VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       142 ~~~VLDiGcG-~G~~t~-~la~~-~~~-------------v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~  205 (281)
                      .++|+=|||| .|.... .+++. +.+             |+..|.+++..+.+.+...   +++.+..|+.+..   ..
T Consensus       569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~---~~~~v~lDv~D~e---~L  642 (1042)
T PLN02819        569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE---NAEAVQLDVSDSE---SL  642 (1042)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC---CCceEEeecCCHH---HH
Confidence            4589999997 354333 33332 223             8889999877665555432   5566677665432   11


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcc
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~  245 (281)
                      ..++      ...|+|++-.|+....++.+..++.+..+-
T Consensus       643 ~~~v------~~~DaVIsalP~~~H~~VAkaAieaGkHvv  676 (1042)
T PLN02819        643 LKYV------SQVDVVISLLPASCHAVVAKACIELKKHLV  676 (1042)
T ss_pred             HHhh------cCCCEEEECCCchhhHHHHHHHHHcCCCEE
Confidence            1111      348999999999999999998888877653

>PRK06484 short chain dehydrogenase; Validated

Probab=82.91  E-value=7.6  Score=37.41  Aligned_cols=81  Identities=17%  Similarity=0.223  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++.+|=.|.+.|.   ++..+++.|.+|+.++.+++.++.+.+...  .++..+.+|+.+..-....++.+.  ...+.
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~  343 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG--DEHLSVQADITDEAAVESAFAQIQ--ARWGR  343 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence            45678888876653   344455568899999999887776665442  356678888876543222333321  23367


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus       344 id~li~nA  351 (520)
T PRK06484        344 LDVLVNNA  351 (520)
T ss_pred             CCEEEECC
Confidence            89999874

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=82.86  E-value=6  Score=36.03  Aligned_cols=74  Identities=22%  Similarity=0.302  Sum_probs=50.9

Q ss_pred             CCEEEEEcCCccHHH----HHHHHcCCEEEEEeC----CHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482          142 GDIVLEIGPGTGSLT----NVLLNAGATVLAIEK----DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t----~~la~~~~~v~gvD~----s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      +.+||-.| |.|+++    +.|.+.|..|+++|-    ..+.+..+++...+...|.|+++|..+.+.-...|+.     
T Consensus         2 ~~~VLVtG-gaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~-----   75 (343)
T KOG1371|consen    2 GKHVLVTG-GAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSE-----   75 (343)
T ss_pred             CcEEEEec-CCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhh-----
Confidence            34677766 556543    455566889999994    3555556666555556999999999998766655554     


Q ss_pred             CCCCccEEEE
Q 023482          214 SSSGFAKVVA  223 (281)
Q Consensus       214 ~~~~~d~Vi~  223 (281)
                        ..||.|+.
T Consensus        76 --~~fd~V~H   83 (343)
T KOG1371|consen   76 --VKFDAVMH   83 (343)
T ss_pred             --cCCceEEe
Confidence              35888875

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=82.71  E-value=0.72  Score=34.78  Aligned_cols=15  Identities=27%  Similarity=0.406  Sum_probs=12.4

Q ss_pred             CccEEEEcCCCcccH
Q 023482          217 GFAKVVANIPFNIST  231 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~~  231 (281)
                      .||+||+||||....
T Consensus         2 kFD~VIGNPPY~~~~   16 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIK   16 (106)
T ss_pred             CcCEEEECCCChhhc
Confidence            489999999996544

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=82.67  E-value=8.9  Score=32.31  Aligned_cols=81  Identities=14%  Similarity=0.196  Sum_probs=50.6

Q ss_pred             CCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +++||=.|+ +|.++..+++    +|.+|++++.++...+.....+... .++.++.+|+.+..-.+..++.+.  ...+
T Consensus         5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   81 (246)
T PRK05653          5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAV--EAFG   81 (246)
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence            467887775 6666666654    4789999999987766555544432 378888899876432221222111  1124


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|.||.+.
T Consensus        82 ~id~vi~~a   90 (246)
T PRK05653         82 ALDILVNNA   90 (246)
T ss_pred             CCCEEEECC
Confidence            578888865

>PRK07201 short chain dehydrogenase; Provisional

Probab=82.55  E-value=7  Score=38.86  Aligned_cols=82  Identities=16%  Similarity=0.215  Sum_probs=52.4

Q ss_pred             CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++++|=.|.+. .++..+    ++.|.+|+.++.+++.++...+..... .++.++.+|+.+..-....++.+.  ...+
T Consensus       371 ~k~vlItGas~-giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g  447 (657)
T PRK07201        371 GKVVLITGASS-GIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDIL--AEHG  447 (657)
T ss_pred             CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HhcC
Confidence            56788777644 444444    445889999999988877666555432 378899999877543222222221  2235


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|++|.|.-
T Consensus       448 ~id~li~~Ag  457 (657)
T PRK07201        448 HVDYLVNNAG  457 (657)
T ss_pred             CCCEEEECCC
Confidence            6899998753

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.52  E-value=8.8  Score=33.00  Aligned_cols=82  Identities=13%  Similarity=0.139  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCC------------HHHHHHHHHHhcCC-CCeEEEEcCccccccc
Q 023482          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIR  202 (281)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s------------~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~  202 (281)
                      .+++||=.|++    .|. ++..+++.|.+|+.++.+            +.... ........ .++.++.+|+.+..-.
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~   82 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGVRCEHMEIDLSQPYAP   82 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCCeEEEEECCCCCHHHH
Confidence            35678999975    332 344455568899999876            22222 22222222 3788999998774422


Q ss_pred             cchhhHHHhhcCCCCccEEEEcC
Q 023482          203 SHMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      ...++.+.  ...+..|+||.+.
T Consensus        83 ~~~~~~~~--~~~g~id~vi~~a  103 (256)
T PRK12748         83 NRVFYAVS--ERLGDPSILINNA  103 (256)
T ss_pred             HHHHHHHH--HhCCCCCEEEECC
Confidence            22233222  2235689888864

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=82.49  E-value=3.2  Score=40.28  Aligned_cols=44  Identities=25%  Similarity=0.225  Sum_probs=36.5

Q ss_pred             CCCCCEEEEEcCCc-cHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH
Q 023482          139 VQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (281)
Q Consensus       139 ~~~~~~VLDiGcG~-G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~  182 (281)
                      ..++++|+=+|+|. |..++..++. |++|+++|.+++.++.+++.
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl  207 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM  207 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence            34688999999994 6666666765 88999999999999998873

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=82.34  E-value=8.3  Score=38.87  Aligned_cols=83  Identities=13%  Similarity=0.116  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .+++||=.|++. .++..+    ++.|++|++++.+.+.++.....+..   .+++.++.+|+.+..--...++.+.  .
T Consensus       413 ~gkvvLVTGasg-gIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~--~  489 (676)
T TIGR02632       413 ARRVAFVTGGAG-GIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVA--L  489 (676)
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHH--H
Confidence            356888888654 444444    44588999999998877666554431   1367788899877432222222221  2


Q ss_pred             CCCCccEEEEcCC
Q 023482          214 SSSGFAKVVANIP  226 (281)
Q Consensus       214 ~~~~~d~Vi~n~P  226 (281)
                      ..+..|++|.|.-
T Consensus       490 ~~g~iDilV~nAG  502 (676)
T TIGR02632       490 AYGGVDIVVNNAG  502 (676)
T ss_pred             hcCCCcEEEECCC
Confidence            3357899998753

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=82.14  E-value=10  Score=30.98  Aligned_cols=95  Identities=15%  Similarity=0.150  Sum_probs=57.0

Q ss_pred             ccCCHHHHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 023482          123 YMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~-~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~  199 (281)
                      |.-+.+.++.+++.+.-  ..+.+|+=|||=+-+..+.-.. .+.+++.+|+|...-...       ++ .|+.-|..+-
T Consensus         5 fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~-------~~-~F~fyD~~~p   76 (162)
T PF10237_consen    5 FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG-------GD-EFVFYDYNEP   76 (162)
T ss_pred             cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC-------Cc-ceEECCCCCh
Confidence            55555666666666543  3456899998877655544411 256999999998664321       13 4666665541


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCcccHHHH
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI  234 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~  234 (281)
                      .      ++-.  .-.+.+|+||.+||| ...+..
T Consensus        77 ~------~~~~--~l~~~~d~vv~DPPF-l~~ec~  102 (162)
T PF10237_consen   77 E------ELPE--ELKGKFDVVVIDPPF-LSEECL  102 (162)
T ss_pred             h------hhhh--hcCCCceEEEECCCC-CCHHHH
Confidence            1      0000  113689999999999 444443

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=82.12  E-value=17  Score=32.08  Aligned_cols=43  Identities=26%  Similarity=0.399  Sum_probs=28.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhc
Q 023482          140 QEGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      ..+++++=+|+| | .+..++    ..+.+|+.++.+++-.+...+.+.
T Consensus       115 ~~~k~vliiGaG-g-~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~  161 (270)
T TIGR00507       115 RPNQRVLIIGAG-G-AARAVALPLLKADCNVIIANRTVSKAEELAERFQ  161 (270)
T ss_pred             ccCCEEEEEcCc-H-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence            346789999987 3 343333    347799999999776655554443

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=82.09  E-value=2.3  Score=37.17  Aligned_cols=78  Identities=14%  Similarity=0.184  Sum_probs=45.9

Q ss_pred             EEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC
Q 023482          146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       146 LDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      |..=+|+-.++..+.+..-+.+.+|+.+.-.+..++++....++++++.|..+.-.        ..+.+...-=+|+.+|
T Consensus        62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~--------allPP~~rRglVLIDP  133 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLK--------ALLPPPERRGLVLIDP  133 (245)
T ss_dssp             --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHH--------HH-S-TTS-EEEEE--
T ss_pred             cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhh--------hhCCCCCCCeEEEECC
Confidence            77889999999999888779999999999999999988876799999999876311        1112334456788899


Q ss_pred             CCcccH
Q 023482          226 PFNIST  231 (281)
Q Consensus       226 P~~~~~  231 (281)
                      ||....
T Consensus       134 pYE~~~  139 (245)
T PF04378_consen  134 PYEQKD  139 (245)
T ss_dssp             ---STT
T ss_pred             CCCCch
Confidence            997655

; PDB: 2OO3_A.

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.08  E-value=9.4  Score=32.29  Aligned_cols=82  Identities=12%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             CCEEEEEcCCccHHHHHHH----HcCCEEEEE-eCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          142 GDIVLEIGPGTGSLTNVLL----NAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la----~~~~~v~gv-D~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++||=.|+ +|.++..++    +.|.+|+.+ +.+++..+.....+... .++.++.+|+.+..-....++.+.  ...
T Consensus         5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   81 (247)
T PRK05565          5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIV--EKF   81 (247)
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHh
Confidence            457887874 555555554    447899998 99887766555544432 378899999987542222222221  122


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +.+|+||.+..
T Consensus        82 ~~id~vi~~ag   92 (247)
T PRK05565         82 GKIDILVNNAG   92 (247)
T ss_pred             CCCCEEEECCC
Confidence            46899998753

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=81.90  E-value=15  Score=33.74  Aligned_cols=47  Identities=32%  Similarity=0.440  Sum_probs=34.7

Q ss_pred             HHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHH
Q 023482          135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~  181 (281)
                      ....+.++++||=.|+| .|.++..+++. |+ +|+++|.+++-++.+++
T Consensus       185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~  234 (371)
T cd08281         185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE  234 (371)
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence            34556788888888875 34455556665 77 79999999999888865

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK08703 short chain dehydrogenase; Provisional

Probab=81.84  E-value=11  Score=32.05  Aligned_cols=83  Identities=14%  Similarity=0.230  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccc--cchhhHHHhh
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIR--SHMLSLFERR  212 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~--d~~~d~v~~~  212 (281)
                      ++++||=.|++ |.++..+    +++|.+|+.++.++...+.....+...  ..+.++..|+.+....  +..++.+.. 
T Consensus         5 ~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~-   82 (239)
T PRK08703          5 SDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE-   82 (239)
T ss_pred             CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH-
Confidence            45789999964 4444444    445889999999988776665554322  2566777777542210  111122211 


Q ss_pred             cCCCCccEEEEcC
Q 023482          213 KSSSGFAKVVANI  225 (281)
Q Consensus       213 ~~~~~~d~Vi~n~  225 (281)
                      ...+..|.||.|.
T Consensus        83 ~~~~~id~vi~~a   95 (239)
T PRK08703         83 ATQGKLDGIVHCA   95 (239)
T ss_pred             HhCCCCCEEEEec
Confidence            1114678888764

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=81.83  E-value=11  Score=32.36  Aligned_cols=77  Identities=22%  Similarity=0.294  Sum_probs=45.3

Q ss_pred             EEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          144 IVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      +||=.|+ +|.++..++    +.|.+|++++.+++-++.......  .++.++.+|+.+..--...++.+.  ...+..|
T Consensus         2 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~--~~~~~id   76 (248)
T PRK10538          2 IVLVTGA-TAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG--DNLYIAQLDVRNRAAIEEMLASLP--AEWRNID   76 (248)
T ss_pred             EEEEECC-CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc--cceEEEEecCCCHHHHHHHHHHHH--HHcCCCC
Confidence            3555554 444455544    458899999999877665544332  368888999877432111222211  2224678


Q ss_pred             EEEEcC
Q 023482          220 KVVANI  225 (281)
Q Consensus       220 ~Vi~n~  225 (281)
                      .+|.+.
T Consensus        77 ~vi~~a   82 (248)
T PRK10538         77 VLVNNA   82 (248)
T ss_pred             EEEECC
Confidence            888763

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=81.60  E-value=12  Score=33.07  Aligned_cols=83  Identities=16%  Similarity=0.228  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~----~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .++.+|--|.+.|.   .+..+++.|++|+..+.+++.++.+.+.....    +++..+.+|+.+-+.....++...  .
T Consensus         7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~--~   84 (270)
T KOG0725|consen    7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV--E   84 (270)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH--H
Confidence            56788888877664   56677778999999999999988777665432    368899999987554333333332  3


Q ss_pred             C-CCCccEEEEcC
Q 023482          214 S-SSGFAKVVANI  225 (281)
Q Consensus       214 ~-~~~~d~Vi~n~  225 (281)
                      . .+..|+++.|.
T Consensus        85 ~~~GkidiLvnna   97 (270)
T KOG0725|consen   85 KFFGKIDILVNNA   97 (270)
T ss_pred             HhCCCCCEEEEcC
Confidence            3 57899999874

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=81.56  E-value=6.4  Score=37.24  Aligned_cols=62  Identities=23%  Similarity=0.237  Sum_probs=43.6

Q ss_pred             CccccCCHHHHHHHHHHhcC-CCCCEEEEEcCCc-cHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Q 023482          120 GQHYMLNSEINDQLAAAAAV-QEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (281)
Q Consensus       120 g~~~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~-G~~t~~la~~-~~~v~gvD~s~~~l~~a~~  181 (281)
                      ...|-+-+...+.+....+. ..+++|+=+|+|. |......++. |++|+.+|+++...+.|+.
T Consensus       179 dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~  243 (413)
T cd00401         179 DNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM  243 (413)
T ss_pred             cccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence            33344555666777776554 4788999999995 5444444444 8899999999988877765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09291 short chain dehydrogenase; Provisional

Probab=81.44  E-value=8.9  Score=32.81  Aligned_cols=74  Identities=18%  Similarity=0.142  Sum_probs=46.0

Q ss_pred             CEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ++||=.|++. .++..+    ++.|.+|+++..++.-.+......... .++.++.+|+.+..-      +..  .....
T Consensus         3 ~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~--~~~~~   73 (257)
T PRK09291          3 KTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAID------RAQ--AAEWD   73 (257)
T ss_pred             CEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHH------HHH--HhcCC
Confidence            4688888754 444444    445889999999877665555444332 368888999876421      110  11136


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|+||.|.
T Consensus        74 id~vi~~a   81 (257)
T PRK09291         74 VDVLLNNA   81 (257)
T ss_pred             CCEEEECC
Confidence            79999874

>PRK07775 short chain dehydrogenase; Provisional

Probab=81.37  E-value=12  Score=32.69  Aligned_cols=81  Identities=10%  Similarity=0.049  Sum_probs=49.0

Q ss_pred             CCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+.+|=.|+ +|.++..+++    +|.+|+.+..++...+......... .++.++.+|+.+...-...++.+.  ...+
T Consensus        10 ~~~vlVtGa-~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~   86 (274)
T PRK07775         10 RRPALVAGA-SSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAE--EALG   86 (274)
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HhcC
Confidence            457888885 4555655554    4889999998876655554444322 378888899876542222222221  1224


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|.+|.|.
T Consensus        87 ~id~vi~~A   95 (274)
T PRK07775         87 EIEVLVSGA   95 (274)
T ss_pred             CCCEEEECC
Confidence            678888764

>PRK06482 short chain dehydrogenase; Provisional

Probab=81.24  E-value=11  Score=32.88  Aligned_cols=78  Identities=18%  Similarity=0.193  Sum_probs=48.7

Q ss_pred             CEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      ++||=.|+ +|.++..++    +.|.+|++++.+++.++..+....  .++.++.+|+.+...-...++-+.  ...+..
T Consensus         3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~i   77 (276)
T PRK06482          3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG--DRLWVLQLDVTDSAAVRAVVDRAF--AALGRI   77 (276)
T ss_pred             CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--CceEEEEccCCCHHHHHHHHHHHH--HHcCCC
Confidence            46777776 455555554    457899999999887766554432  378899999887542222221110  223567


Q ss_pred             cEEEEcC
Q 023482          219 AKVVANI  225 (281)
Q Consensus       219 d~Vi~n~  225 (281)
                      |+||.+.
T Consensus        78 d~vi~~a   84 (276)
T PRK06482         78 DVVVSNA   84 (276)
T ss_pred             CEEEECC
Confidence            9898864

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=81.21  E-value=7.7  Score=35.35  Aligned_cols=58  Identities=21%  Similarity=0.241  Sum_probs=39.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~  199 (281)
                      .+.+||=.| |+|.++..+++    .|.+|++++.++.............++++++.+|+.+.
T Consensus         9 ~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   70 (353)
T PLN02896          9 ATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEE   70 (353)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCH
Confidence            456888888 46777776665    47899999887654443333332234788999998764

>PRK06484 short chain dehydrogenase; Validated

Probab=81.15  E-value=8.1  Score=37.21  Aligned_cols=81  Identities=14%  Similarity=0.162  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+...+.  .++.++..|+.+..--...++.+.  ...+.
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~   79 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG--PDHHALAMDVSDEAQIREGFEQLH--REFGR   79 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEeccCCHHHHHHHHHHHH--HHhCC
Confidence            46788888877663   444455568899999999887776655442  366778888776432222222221  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        80 iD~li~na   87 (520)
T PRK06484         80 IDVLVNNA   87 (520)
T ss_pred             CCEEEECC
Confidence            89999874

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=81.09  E-value=2.6  Score=35.59  Aligned_cols=37  Identities=30%  Similarity=0.513  Sum_probs=29.6

Q ss_pred             hcCCCCCEEEEEcCCccHHHHHHHHc-C--CEEEEEeCCH
Q 023482          137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQ  173 (281)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~v~gvD~s~  173 (281)
                      .+++++.+|+|+-.|.|++|..++.. +  +.|+++=..+
T Consensus        44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e   83 (238)
T COG4798          44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE   83 (238)
T ss_pred             eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence            45678999999999999999999886 2  3777775543

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.05  E-value=7.8  Score=33.69  Aligned_cols=83  Identities=16%  Similarity=0.147  Sum_probs=44.6

Q ss_pred             CCCEEEEEcC-CccHH----HHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGP-GTGSL----TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGc-G~G~~----t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|. |++.+    +..+++.|++|+.++......+.+++.....+...++.+|+.+..--+..++.+.  ...
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~   82 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLG--QHW   82 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHH--HHh
Confidence            4678999996 34433    4444556889988765422222222221222233467788876543333333332  233


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        83 g~iD~lvnnA   92 (260)
T PRK06997         83 DGLDGLVHSI   92 (260)
T ss_pred             CCCcEEEEcc
Confidence            6789999874

>PRK11524 putative methyltransferase; Provisional

Probab=81.04  E-value=1.5  Score=39.21  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=24.0

Q ss_pred             CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       187 ~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      ++.+++++|..++.-.          ...+++|+||.+|||..
T Consensus         7 ~~~~i~~gD~~~~l~~----------l~~~siDlIitDPPY~~   39 (284)
T PRK11524          7 EAKTIIHGDALTELKK----------IPSESVDLIFADPPYNI   39 (284)
T ss_pred             CCCEEEeccHHHHHHh----------cccCcccEEEECCCccc
Confidence            3568999999875210          23468999999999964

>PRK12827 short chain dehydrogenase; Provisional

Probab=80.99  E-value=12  Score=31.66  Aligned_cols=81  Identities=17%  Similarity=0.145  Sum_probs=47.1

Q ss_pred             CCEEEEEcCCccHHHHHH----HHcCCEEEEEeC----CHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhh
Q 023482          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEK----DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~----s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      +.++|=.|. +|.++..+    +++|.+|+.++.    +++..+......... .++.++.+|+.+.......++.+.  
T Consensus         6 ~~~ilItGa-sg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--   82 (249)
T PRK12827          6 SRRVLITGG-SGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGV--   82 (249)
T ss_pred             CCEEEEECC-CChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--
Confidence            467887774 45555544    445889998765    344444444444332 378899999887543222232221  


Q ss_pred             cCCCCccEEEEcC
Q 023482          213 KSSSGFAKVVANI  225 (281)
Q Consensus       213 ~~~~~~d~Vi~n~  225 (281)
                      ...+..|.||.+.
T Consensus        83 ~~~~~~d~vi~~a   95 (249)
T PRK12827         83 EEFGRLDILVNNA   95 (249)
T ss_pred             HHhCCCCEEEECC
Confidence            1235689998874

>PRK07041 short chain dehydrogenase; Provisional

Probab=80.44  E-value=7.7  Score=32.64  Aligned_cols=70  Identities=13%  Similarity=0.181  Sum_probs=43.2

Q ss_pred             CccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCC
Q 023482          151 GTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (281)
Q Consensus       151 G~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P  226 (281)
                      |+|.++..+    ++.|.+|+.++.+++-++......+...+++++.+|+.+..--...+      ...+..|.+|.|..
T Consensus         5 as~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~------~~~~~id~li~~ag   78 (230)
T PRK07041          5 GSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFF------AEAGPFDHVVITAA   78 (230)
T ss_pred             CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH------HhcCCCCEEEECCC
Confidence            344444444    44588999999998766655544433347888999987653221111      12256788888753

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=80.33  E-value=5.3  Score=36.64  Aligned_cols=51  Identities=25%  Similarity=0.369  Sum_probs=39.4

Q ss_pred             HHHHHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHH
Q 023482          132 QLAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~  182 (281)
                      ..+..++.+++++|.=+||| .|..++.-|.. ++ .+++||+++.-+++|++-
T Consensus       176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f  229 (366)
T COG1062         176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF  229 (366)
T ss_pred             HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence            34556677899999999998 45555555554 44 999999999999999864

>PRK09135 pteridine reductase; Provisional

Probab=80.07  E-value=13  Score=31.39  Aligned_cols=82  Identities=12%  Similarity=0.152  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCC-HHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKD-QHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s-~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .+++||=.|+ +|.++..++    +.+.+|++++.+ +.-.+.....+...  .++.++.+|+.+..-....++.+.  .
T Consensus         5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~   81 (249)
T PRK09135          5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACV--A   81 (249)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHH--H
Confidence            4568999996 455565554    458899999975 33333333333221  368889999977542222222211  1


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|.||.+.
T Consensus        82 ~~~~~d~vi~~a   93 (249)
T PRK09135         82 AFGRLDALVNNA   93 (249)
T ss_pred             HcCCCCEEEECC
Confidence            224578899875

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=80.01  E-value=8.9  Score=37.64  Aligned_cols=50  Identities=24%  Similarity=0.377  Sum_probs=36.6

Q ss_pred             CEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 023482          143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~  199 (281)
                      ++|+=+  |.|..+..+++    .+.+++.+|.|++.++.+++.     ...+++||+.+.
T Consensus       418 ~hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~  471 (558)
T PRK10669        418 NHALLV--GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANE  471 (558)
T ss_pred             CCEEEE--CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCH
Confidence            345554  55556666655    367999999999999888742     578999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
2h1r_A	299	Crystal Structure Of A Dimethyladenosine Transferas		2e-14
1zq9_A	285	Crystal Structure Of Human Dimethyladenosine Transf		3e-13
3fuu_A	271	T. Thermophilus 16s Rrna A1518 And A1519 Methyltran		2e-12
3uzu_A	279	The Structure Of The Ribosomal Rna Small Subunit Me		3e-12
3fut_A	271	Apo-Form Of T. Thermophilus 16s Rrna A1518 And A151		3e-12
3tqs_A	255	Structure Of The Dimethyladenosine Transferase (Ksg		7e-12
3r9x_B	248	Crystal Structure Of Era In Complex With Mggdpnp, N		6e-11
3ftc_A	249	Crystal Structure Of A. Aeolicus Ksga At 1.72-Angst		6e-11
3grr_A	295	Crystal Structure Of The Complex Between S-Adenosyl		2e-10
2erc_A	244	Crystal Structure Of Ermc' A Rrna-Methyl Transferas		1e-08
3tpz_A	273	2.1 Angstrom Crystal Structure Of The L114p Mutant		2e-08
1yub_A	245	Solution Structure Of An Rrna Methyltransferase (Er		6e-08
3fyc_A	265	Crystal Structure Of Dim1 From The Thermophilic Arc		2e-07
3fyd_A	263	Crystal Structure Of Dim1 From The Thermophilic Arc		3e-07
1qyr_A	252	2.1 Angstrom Crystal Structure Of Ksga: A Universal		4e-06

>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From Plasmodium Falciparum Length = 299

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 16/143 (11%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
           GQH + N  I D++  AA ++  DIVLEIG GTG+LT  LL     V+ I+ D  M+  V
Sbjct: 21  GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEV 80
Query: 180 RER--FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237
           ++R  +   + L+V + D +K        ++F +      F    ANIP+ IS+ +I +L
Sbjct: 81  KKRCLYEGYNNLEVYEGDAIK--------TVFPK------FDVCTANIPYKISSPLIFKL 126
Query: 238 LPMGDIFSEVVLLLQEETALRLV 260
           +    +F   VL+ Q+E A R++
Sbjct: 127 ISHRPLFKCAVLMFQKEFAERML 149

>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase Length = 285

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
           +GQH + N  I + +   AA++  D+VLE+GPGTG++T  LL     V+A E D  +V  
Sbjct: 6   IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAE 65
Query: 179 VRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
           + +R        +L+VL  D +K  +                F   VAN+P+ IS+  + 
Sbjct: 66  LHKRVQGTPVASKLQVLVGDVLKTDL--------------PFFDTCVANLPYQISSPFVF 111
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV 260
           +LL     F   +L+ Q E ALRLV
Sbjct: 112 KLLLHRPFFRCAILMFQREFALRLV 136

>pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With Adenosine In Space Group P212121 Length = 271

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
           L   G F  K  GQ+++++     ++  AA    G  V E+GPG G+LT  LL AGA V 
Sbjct: 14  LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVT 72
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
           AIEKD  +  ++ E  + +    V Q+             L+   +   G + +VAN+P+
Sbjct: 73  AIEKDLRLRPVLEETLSGLPVRLVFQDAL-----------LYPWEEVPQG-SLLVANLPY 120
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
           +I+T ++ +LL  G  F+ +V L+Q+E A R+
Sbjct: 121 HIATPLVTRLLKTGR-FARLVFLVQKEVAERM 151

>pdb|3UZU|A Chain A, The Structure Of The Ribosomal Rna Small Subunit Methyltransferase A From Burkholderia Pseudomallei Length = 279

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV----LLNAGATV 166
           +G F RK  GQ+++++  + D + AA   + G+ ++EIGPG G+LT      L   G+ +
Sbjct: 12  QGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPL 71
Query: 167 LAIEKDQHMVGLVRERFASIDQL---KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
            A+E D+ ++G + +RF  + +L     L  DF               R       +++ 
Sbjct: 72  HAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSI-----------ARPGDEPSLRIIG 120
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRT 266
           N+P+NIS+ ++  L+    +  +   +LQ E   R+V EP  + 
Sbjct: 121 NLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPGTKA 164

>pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P21212 Length = 271

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
           L   G F  K  GQ+++++     ++  AA    G  V E+GPG G+LT  LL AGA V 
Sbjct: 14  LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVT 72
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
           AIEKD  +  ++ E  + +    V Q+             L+   +   G + +VAN+P+
Sbjct: 73  AIEKDLRLRPVLEETLSGLPVRLVFQDAL-----------LYPWEEVPQG-SLLVANLPY 120
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALR 258
           +I+T ++ +LL  G  F+ +V L+Q+E A R
Sbjct: 121 HIATPLVTRLLKTGR-FARLVFLVQKEVAER 150

>pdb|3TQS|A Chain A, Structure Of The Dimethyladenosine Transferase (Ksga) From Coxiella Burnetii Length = 255

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           RK  GQH++ +S +  ++ +A   Q+ D ++EIGPG G+LT+ LL     +  +E D+ +
Sbjct: 4   RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
           V  +++++     + + Q D ++          F   K+     +VV N+P+NIST ++ 
Sbjct: 64  VAFLQKKYNQQKNITIYQNDALQFD--------FSSVKTDKPL-RVVGNLPYNISTPLLF 114
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
            L        +    LQ+E   R+
Sbjct: 115 HLFSQIHCIEDXHFXLQKEVVRRI 138

>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp, Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga Length = 248

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 24/150 (16%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
           +KS GQH +++  +  ++A    ++EG+ V+E+G GTG+LT VLL      L  IE D+ 
Sbjct: 5   KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 64
Query: 175 MVGLVRERFASI--DQLKVLQED---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
           MV    E   SI  ++L+V+ ED   F  C +   +              KVV N+P+N+
Sbjct: 65  MV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNV 106
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRL 259
           ++ +I+  +   D     V ++Q+E A +L
Sbjct: 107 ASLIIENTVYNKDCVPLAVFMVQKEVAEKL 136

>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom Resolution Length = 249

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 24/150 (16%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
           +KS GQH +++  +  ++A    ++EG+ V+E+G GTG+LT VLL      L  IE D+ 
Sbjct: 6   KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 65
Query: 175 MVGLVRERFASI--DQLKVLQED---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
           MV    E   SI  ++L+V+ ED   F  C +   +              KVV N+P+N+
Sbjct: 66  MV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNV 107
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRL 259
           ++ +I+  +   D     V ++Q+E A +L
Sbjct: 108 ASLIIENTVYNKDCVPLAVFMVQKEVAEKL 137

>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl Homocysteine And Methanocaldococcus Jannaschi Dim1. Length = 295

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 14/146 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
           P+K LGQ ++++    ++   +A + + D+VLEIG G G LT  L      V  IE D+ 
Sbjct: 24  PKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKS 83
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +     +     + ++++  D +K  +            +   F KVVAN+P+ IS+ + 
Sbjct: 84  LEPYANKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPIT 131
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV 260
            +L+  G  F   VL+ Q E A R+V
Sbjct: 132 FKLIKRG--FDLAVLMYQYEFAKRMV 155

>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase Length = 244

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
           D++     + E D + EIG G G  T  L+     V AIE D  +      +    D  +
Sbjct: 20  DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQ 79
Query: 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLL 250
           VL +D ++          F+  K+ S   K+  NIP+NISTD+I++++    I  E+ L+
Sbjct: 80  VLNKDILQ----------FKFPKNQS--YKIFGNIPYNISTDIIRKIV-FDSIADEIYLI 126
Query: 251 LQEETALRLV 260
           ++   A RL+
Sbjct: 127 VEYGFAKRLL 136

>pdb|3TPZ|A Chain A, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E. Coli Ksga Length = 273

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
           +G   RK  GQ+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE
Sbjct: 7   QGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIE 66
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
            D+ +   ++       +L + Q+D       +   +  E  +      +V  N P+NIS
Sbjct: 67  LDRDLAARLQTHPFLGPKLTIYQQD-------AMTFNFGELAEKMGQPLRVFGNPPYNIS 119
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
           T ++  L    D  +++  +LQ+E   RLV
Sbjct: 120 TPLMFHLFSYTDAIADMHFMLQKEVVNRLV 149

>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam) That Confers Macrolide-Lincosamide-Streptogramin Antibiotic Resistance, Nmr, Minimized Average Structure Length = 245

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
            Q+++ + ++ +Q+     ++E D V EIG G G LT  L      V +IE D H+  L 
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLS 67
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
            E+     ++ ++ +D ++          F  ++      K+V NIP+++ST +IK+++ 
Sbjct: 68  SEKLKLNTRVTLIHQDILQFQ--------FPNKQR----YKIVGNIPYHLSTQIIKKVV- 114
Query: 240 MGDIFSEVVLLLQE 253
                S++ L+++E
Sbjct: 115 FESRASDIYLIVEE 128

>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 265

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
            Q ++++    ++   +A + + D+VLEIG G G LT  L      V  IE D+ +    
Sbjct: 2   AQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYA 61
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
            +     + ++++  D +K  +            +   F KVVAN+P+ IS+ +  +L+ 
Sbjct: 62  NKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIK 109
Query: 240 MGDIFSEVVLLLQEETALRLV 260
            G  F   VL+ Q E A R+V
Sbjct: 110 RG--FDLAVLMYQYEFAKRMV 128

>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 263

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q ++++    ++   +A + + D+VLEIG G G LT  L      V  IE D+ +     
Sbjct: 1   QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYAN 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
           +     + ++++  D +K  +            +   F KVVAN+P+ IS+ +  +L+  
Sbjct: 61  KLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIKR 108
Query: 241 GDIFSEVVLLLQEETALRLV 260
           G  F   VL+ Q E A R+V
Sbjct: 109 G--FDLAVLMYQYEFAKRMV 126

>pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally Conserved Adenosine Dimethyltransferase Length = 252

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 7/140 (5%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE D+ +   ++
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
                  +L + Q+D       +   +  E  +      +V  N+P+NIST ++  L   
Sbjct: 61  THPFLGPKLTIYQQD-------AMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSY 113
Query: 241 GDIFSEVVLLLQEETALRLV 260
            D  +++  +LQ+E   RLV
Sbjct: 114 TDAIADMHFMLQKEVVNRLV 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	4e-39
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	4e-38
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	4e-37
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	5e-37
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	8e-37
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	5e-36
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	4e-34
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	1e-31
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	4e-31
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	1e-29
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	5e-25
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	1e-07
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-07
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-07
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	8e-07
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	9e-07
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	9e-07
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	5e-06
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	6e-06
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	7e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	8e-06
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-05
2p7i_A	250	Hypothetical protein; putative methyltransferase,	1e-05
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	1e-05
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	2e-05
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	3e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	4e-05
3cc8_A	230	Putative methyltransferase; structural genomics, j	4e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	5e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	6e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	7e-05
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	7e-05
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	8e-05
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	1e-04
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	1e-04
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	1e-04
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	2e-04
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	2e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	2e-04
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	2e-04
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	4e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	4e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	4e-04
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	4e-04
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	5e-04
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	5e-04
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	5e-04
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	8e-04
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	9e-04

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Length = 299

 Score =  137 bits (347), Expect = 4e-39
 Identities = 55/175 (31%), Positives = 83/175 (47%), Gaps = 19/175 (10%)

Query: 109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLA 168
           +S GR      GQH + N  I D++  AA ++  DIVLEIG GTG+LT  LL     V+ 
Sbjct: 10  HSSGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVIT 69

Query: 169 IEKDQHMVGLVRERF--ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
           I+ D  M+  V++R      + L+V + D +K                   F    ANIP
Sbjct: 70  IDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK--------------FDVCTANIP 115

Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
           + IS+ +I +L+    +F   VL+ Q+E A R++       S Y  + I V  + 
Sbjct: 116 YKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG--DSNYSRLTINVKLFC 168

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Length = 285

 Score =  134 bits (340), Expect = 4e-38
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 20/169 (11%)

Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
              +GQH + N  I + +   AA++  D+VLE+GPGTG++T  LL     V+A E D  +
Sbjct: 3   NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRL 62

Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
           V  + +R        +L+VL  D +K  +                F   VAN+P+ IS+ 
Sbjct: 63  VAELHKRVQGTPVASKLQVLVGDVLKTDLPF--------------FDTCVANLPYQISSP 108

Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
            + +LL     F   +L+ Q E ALRLV +P      Y  ++I     +
Sbjct: 109 FVFKLLLHRPFFRCAILMFQREFALRLVAKPG--DKLYCRLSINTQLLA 155

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Length = 295

 Score =  132 bits (334), Expect = 4e-37
 Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 17/178 (9%)

Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
           + +    S    P+K LGQ ++++    ++   +A + + D+VLEIG G G LT  L   
Sbjct: 12  SGLVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN 71

Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
              V  IE D+ +     +     + ++++  D +K  +            +   F KVV
Sbjct: 72  AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDL------------NKLDFNKVV 119

Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
           AN+P+ IS+ +  +L+  G  F   VL+ Q E A R+V      T +Y  +++ V   
Sbjct: 120 ANLPYQISSPITFKLIKRG--FDLAVLMYQYEFAKRMVAAAG--TKDYGRLSVAVQSR 173

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Length = 244

 Score =  130 bits (330), Expect = 5e-37
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 19/165 (11%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
                 Q+++ +    D++     + E D + EIG G G  T  L+     V AIE D  
Sbjct: 4   KNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHK 63

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +      +    D  +VL +D ++                 +   K+  NIP+NISTD+I
Sbjct: 64  LCKTTENKLVDHDNFQVLNKDILQFKF------------PKNQSYKIFGNIPYNISTDII 111

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
           ++++    I  E+ L+++   A RL+      +  R + +F+   
Sbjct: 112 RKIV-FDSIADEIYLIVEYGFAKRLL------NTKRSLALFLMAE 149

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Length = 245

 Score =  129 bits (328), Expect = 8e-37
 Identities = 35/165 (21%), Positives = 74/165 (44%), Gaps = 19/165 (11%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
                 Q+++ + ++ +Q+     ++E D V EIG G G LT  L      V +IE D H
Sbjct: 3   KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +  L  E+     ++ ++ +D ++                +    K+V NIP+++ST +I
Sbjct: 63  LFNLSSEKLKLNTRVTLIHQDILQFQF------------PNKQRYKIVGNIPYHLSTQII 110

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
           K+++      S++ L+++E    R          +R + + ++  
Sbjct: 111 KKVV-FESRASDIYLIVEEGFYKRT------LDIHRTLGLLLHTQ 148

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} Length = 255

 Score =  128 bits (324), Expect = 5e-36
 Identities = 40/166 (24%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
            RK  GQH++ +S +  ++ +A   Q+ D ++EIGPG G+LT+ LL     +  +E D+ 
Sbjct: 3   MRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRD 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
           +V  +++++     + + Q D ++        S+   +       +VV N+P+NIST ++
Sbjct: 63  LVAFLQKKYNQQKNITIYQNDALQFDFS----SVKTDKP-----LRVVGNLPYNISTPLL 113

Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
             L        ++  +LQ+E   R+  E    + +Y  +++   ++
Sbjct: 114 FHLFSQIHCIEDMHFMLQKEVVRRITAEVG--SHDYGRLSVMAQYF 157

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} Length = 279

 Score =  123 bits (312), Expect = 4e-34
 Identities = 43/171 (25%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL--- 160
              +   +G F RK  GQ+++++  + D + AA   + G+ ++EIGPG G+LT  ++   
Sbjct: 5   MSNSRQHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARL 64

Query: 161 -NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
              G+ + A+E D+ ++G + +RF   + L++   D +     S      E         
Sbjct: 65  ATPGSPLHAVELDRDLIGRLEQRFG--ELLELHAGDALTFDFGSIARPGDEPS------L 116

Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEY 269
           +++ N+P+NIS+ ++  L+    +  +   +LQ E   R+V EP   T  +
Sbjct: 117 RIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPG--TKAF 165

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A Length = 252

 Score =  116 bits (294), Expect = 1e-31
 Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 10/160 (6%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE D+ +   ++
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
                  +L + Q+D +  +       + +         +V  N+P+NIST ++  L   
Sbjct: 61  THPFLGPKLTIYQQDAMTFNFGELAEKMGQPL-------RVFGNLPYNISTPLMFHLFSY 113

Query: 241 GDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
            D  +++  +LQ+E   RLV  P+  +  Y  +++   +Y
Sbjct: 114 TDAIADMHFMLQKEVVNRLVAGPN--SKAYGRLSVMAQYY 151

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* Length = 249

 Score =  115 bits (290), Expect = 4e-31
 Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 18/166 (10%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQ 173
            +KS GQH +++  +  ++A    ++EG+ V+E+G GTG+LT VLL      +  IE D+
Sbjct: 5   LKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDR 64

Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
            MV  ++      ++L+V+ ED  K        SL +         KVV N+P+N+++ +
Sbjct: 65  EMVENLKSIGD--ERLEVINEDASKFPFC----SLGKE-------LKVVGNLPYNVASLI 111

Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
           I+  +   D     V ++Q+E A +L        +   +++FV  +
Sbjct: 112 IENTVYNKDCVPLAVFMVQKEVAEKLQG----KKDTGWLSVFVRTF 153

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Length = 271

 Score =  111 bits (281), Expect = 1e-29
 Identities = 50/180 (27%), Positives = 93/180 (51%), Gaps = 18/180 (10%)

Query: 103 ATIKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
            +++AL  + G F  K  GQ+++++     ++  AA    G  V E+GPG G+LT  LL 
Sbjct: 8   QSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLE 66

Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
           AGA V AIEKD  +  ++ E  + +  ++++ +D +          + +          +
Sbjct: 67  AGAEVTAIEKDLRLRPVLEETLSGLP-VRLVFQDALLYPWE----EVPQGS-------LL 114

Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
           VAN+P++I+T ++ +LL  G   + +V L+Q+E A R+   P   T  Y  + + V  ++
Sbjct: 115 VANLPYHIATPLVTRLLKTGRF-ARLVFLVQKEVAERMTARPK--TPAYGVLTLRVAHHA 171

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 Length = 353

 Score =  101 bits (252), Expect = 5e-25
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 25/189 (13%)

Query: 115 PRKSLGQHYMLNSEINDQ------LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TV 166
            +   G  Y+ N  + ++      L       E   VL++ PG G  + +  N       
Sbjct: 26  LKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY 85

Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS---LFERRKSSSGFA---- 219
             +EK   +   +  +F     L++L+ D       S+++    +F     SS       
Sbjct: 86  SLLEKRSSLYKFLNAKFEG-SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKF 144

Query: 220 KVVANIPFNISTDVIKQLL--------PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP 271
             VAN+    S  +I Q L               +++L +   TA +L+           
Sbjct: 145 LTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLL-ARPGMHSRSK 203

Query: 272 INIFVNFYS 280
            ++    ++
Sbjct: 204 CSVVREAFT 212

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
           + +      +    VLE G GTG+LTN LL AG TV  IE  + M  + +E+     +  
Sbjct: 35  EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP--KEFS 92

Query: 191 VLQEDF 196
           + + DF
Sbjct: 93  ITEGDF 98

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
            I + +     + +G ++ +IG GTG  +  L N G  V A+E    M       
Sbjct: 21  RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVH 75

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 10/56 (17%), Positives = 24/56 (42%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI 186
           ++        +  ++++ G G G     LL     +  I+ +   +  V+E+F S+
Sbjct: 7   EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSV 62

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
           + L      Q G+ +L++G GTG LT  +  +GA VL  +    M+   R+ +  + 
Sbjct: 47  EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLH 103

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE---RFASIDQLKV 191
             A   + D+ +++G GTG +T  L      V AI+++   +        R    D + +
Sbjct: 27  CLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTL 86

Query: 192 LQEDF 196
           ++ D 
Sbjct: 87  MEGDA 91

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 48.0 bits (114), Expect = 9e-07
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
            +A     E  + LE+G GTG +   L+  G   +A++ D  M+ + R++ A +D
Sbjct: 31  ASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVD 85

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKV 191
            L    A     ++L++G GTG  T  L + G  +  +E    +V L R+   S+     
Sbjct: 32  VLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVT---F 88

Query: 192 LQEDF 196
                
Sbjct: 89  HHGTI 93

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 12/64 (18%), Positives = 20/64 (31%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
           L  + +       LEIG   G+ T  L      +  I+     +G   +R      +   
Sbjct: 43  LRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWA 102

Query: 193 QEDF 196
             D 
Sbjct: 103 ATDI 106

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 94  ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
           A +   + +  +       R P   +      + E+   L  +  +     VLE G G G
Sbjct: 3   AMNHSRESYDRLARELGGYRHPWARVLSGP--DPELTFDLWLSRLLTPQTRVLEAGCGHG 60

Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
                     A   A +    ++ L R      D
Sbjct: 61  PDAARFGPQAARWAAYDFSPELLKLARANAPHAD 94

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
           L    A      VLE+  GTG  T  L      V A++    M+          D ++  
Sbjct: 38  LERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGL--DNVEFR 95

Query: 193 QEDF 196
           Q+D 
Sbjct: 96  QQDL 99

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLK 190
           ++ A+   E   +L++G GTG L+  L+     AT   ++  + M+ + + RF    ++K
Sbjct: 36  VSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVK 95

Query: 191 VLQEDFVK 198
            ++ D+ K
Sbjct: 96  YIEADYSK 103

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
           +LE+G   G  T+ L      +  +E  +  +   + R    D +  +   F
Sbjct: 46  LLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK--DGITYIHSRF 95

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 24/155 (15%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLL--NAGATVLAIEKDQHMVGLVRERFASI---- 186
           LA+  A      + ++G G G+    +      A V   E+ Q M    R          
Sbjct: 28  LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA 87

Query: 187 --DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ-------- 236
              +++VL+ D     +     +  E       F  V+ N P+N + D            
Sbjct: 88  FSARIEVLEAD-----VTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAH 142

Query: 237 ---LLPMGDIFSEVVLLLQEETALRLVEPSLRTSE 268
                   D       ++     L L+      +E
Sbjct: 143 AMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAE 177

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 12/51 (23%), Positives = 18/51 (35%)

Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
                +  G  +LE+G G G     +L AG  V A +    +      R  
Sbjct: 36  KFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLG 86

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 99  DDYHATIKALNSKGRFPRKSLG--------QHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
             +H     L  +G    +  G           +  S +     AA A + G+++ +IG 
Sbjct: 5   HHHHHHSSGLVPRGSHMSQVPGRPESAFAHDGQITKSPMRALTLAALAPRRGELLWDIGG 64

Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRE---RFASIDQLKVLQEDF 196
           G+GS++     AG   + IE     +  +++    +    +++ +Q   
Sbjct: 65  GSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA 113

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVL--LNAGATVLAIEKDQHMVGLVRERFAS 185
           +   L        G  VLE G G G+ T +L   N  A + +I+     +   RE    
Sbjct: 25  LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK 83

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
           +E   VL+IG  +G+L   +   G  V  IE         +E+   +    +   D 
Sbjct: 31  KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDM 87

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
             +   A  +    VL+IG G G             + ++  + MV +    
Sbjct: 11  GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSF 62

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
            A    G  +L+ G G G +   L   G  VL  + D  ++   ++ F    
Sbjct: 41  DAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEAR 92

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 118 SLGQHYMLNSEINDQLAAA--AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           +     M +S     +       V++   VL++G G G  T  L   G   + ++  + M
Sbjct: 28  NQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVM 87

Query: 176 VGLVRERFASIDQLKVLQED 195
           +   +ER      L  ++ D
Sbjct: 88  IQKGKER-GEGPDLSFIKGD 106

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
           +  A   ++ + VL++G G G L   L + G   + ++ D+ +V   R   A
Sbjct: 44  ILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGA 95

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQED 195
              + +G  VLEIG G G  T ++      V+++E ++ M     +  +  + +K++  D
Sbjct: 65  ELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGD 124

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 10/140 (7%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKV 191
            +A    + +   VLE G G+G+L  VL      V   E  +      ++        K 
Sbjct: 82  YIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLK-----KF 136

Query: 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI--FSEVVL 249
                VK        +        + F  V    P++    V K L+    +        
Sbjct: 137 NLGKNVKFFNVDFKDAEVPEGIFHAAFVDVRE--PWHYLEKVHKSLMEGAPVGFLLPTAN 194

Query: 250 LLQEET-ALRLVEPSLRTSE 268
            + +   ++     +L   E
Sbjct: 195 QVIKLLESIENYFGNLEVVE 214

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 111 KGRFPRKSLGQHYMLNSEIN--DQLAAAAAVQEGDIVLEIGPGTGSLTNVLL--NAGATV 166
           +   P ++L   Y     +      AA    + G+  + IG G   LT +LL    G  V
Sbjct: 90  ESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRV 149

Query: 167 LAIEKDQHMVGLVRERFAS--IDQLKVLQED 195
             +E +  +  L R+      +D + V+  D
Sbjct: 150 NVVEIEPDIAELSRKVIEGLGVDGVNVITGD 180

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQE 194
           A         VLE+  G G LT   L+ G  V A+E    ++   R+R A        + 
Sbjct: 76  ATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRC 135

Query: 195 DFVKCHIRSHMLSLFER 211
             V+  + +   +L +R
Sbjct: 136 TLVQGDMSA--FALDKR 150

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN--VLLNAGATVLAIEKDQHMVGLVRE 181
           +    +     +A A +  + + +IG G+GS+    +      T +  E  +     +  
Sbjct: 8   LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS 67

Query: 182 RFAS--IDQLKVLQEDF 196
              +  +     +Q+  
Sbjct: 68  NAINLGVSDRIAVQQGA 84

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
              +     VLEIG G+G  T +L +    V ++E+ + +    R R  ++D
Sbjct: 72  LLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLD 123

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQ 188
            +L   AA++  + VL++  G G + N        V+A +  + ++ + R         Q
Sbjct: 27  AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ 86

Query: 189 LKVLQED 195
           ++ +Q D
Sbjct: 87  VEYVQGD 93

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK 198
           VL+IG G G    +    G   + ++ ++ M+     +        V++ D ++
Sbjct: 45  VLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK------FNVVKSDAIE 92

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-- 185
           +++     ++EG  VL++G G G     L         V AI+  + MV    E+     
Sbjct: 27  EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG 86

Query: 186 IDQLKVLQED 195
           +  ++VL+ +
Sbjct: 87  LKNVEVLKSE 96

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS 185
           A  + +  IV++   G G+ T  L      V A +  +  +G   +R + 
Sbjct: 17  AEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSD 66

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 5/49 (10%), Positives = 16/49 (32%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
                    +++   G G+ T  L      V+ ++  +  + +  +   
Sbjct: 51  ELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT 99

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 139 VQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
           ++  D +L +G G  +L+  L   G   V +++    +V  ++  +A + QL+    D 
Sbjct: 40  LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV 98

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERF--ASIDQLKVL 192
            A ++ G  +LE+G G+G    ++       V  IE+   +V   +     A +  + V+
Sbjct: 86  IANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVI 145

Query: 193 QED 195
             D
Sbjct: 146 LGD 148

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID 187
             L A   ++      ++G G G+ T +L +      +  I+ D  M+    +R  + +
Sbjct: 23  RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTN 81

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 137 AAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFAS 185
             + +   +++ G G G L  VL   L  G+    I+  + ++   RE F  
Sbjct: 18  WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASI--- 186
             L     ++ G  +L++G G+G +      + G T   I+         + R   +   
Sbjct: 26  ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS 85

Query: 187 DQLKVLQEDF 196
           +++  +  D 
Sbjct: 86  ERVHFIHNDA 95

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 9/47 (19%), Positives = 23/47 (48%)

Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181
               + + D+V+++G G+G +T  +      V AI+     + + ++
Sbjct: 29  GKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQ 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.97
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.97
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.96
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.95
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.93
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.93
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.91
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.91
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	99.89
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.88
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.79
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.59
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.56
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.56
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.55
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.53
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.53
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.52
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.51
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.48
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.48
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.48
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.47
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.47
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.47
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.47
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.47
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.47
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.46
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.46
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.46
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.46
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.46
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.45
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.45
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.45
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.44
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.44
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.44
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.44
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.44
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.43
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.43
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.43
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.43
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.43
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.43
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.42
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.42
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.42
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.41
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.41
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.41
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.41
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.4
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.4
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.4
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.4
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.4
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.39
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.39
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.39
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.38
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.38
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.38
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.38
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.38
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.38
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.38
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.38
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.38
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.37
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.37
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.37
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.36
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.36
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.36
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.36
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.36
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.36
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.36
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.36
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.36
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.36
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.36
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.35
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.35
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.35
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.34
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.34
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.34
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.34
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.34
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.34
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.34
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.34
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.34
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.34
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.34
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.33
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.33
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.33
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.33
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.32
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.32
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.32
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.32
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.32
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.32
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.32
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.32
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.32
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.32
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.32
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.32
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.32
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.32
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.32
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.31
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.31
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.31
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.3
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.3
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.3
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.3
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.3
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.3
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.3
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.29
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.29
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.29
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.29
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.29
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.29
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.28
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.28
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.28
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.28
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.27
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.27
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.27
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.27
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.27
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.27
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.26
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.26
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.26
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.26
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.26
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.25
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.25
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.25
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.25
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.25
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.25
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.25
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.25
3lkd_A	542	Type I restriction-modification system methyltrans	99.24
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.24
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.24
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.24
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.24
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.23
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.23
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.23
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.23
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.23
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.23
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.22
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.22
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.22
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.22
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.22
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.22
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.22
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.22
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.21
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.21
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.21
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.21
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.21
3ocj_A	305	Putative exported protein; structural genomics, PS	99.2
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.2
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.2
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.19
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.19
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.19
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.19
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.19
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.18
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.18
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.18
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.17
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.17
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.17
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.17
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.16
3khk_A	544	Type I restriction-modification system methylation	99.16
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.16
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.15
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.15
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.14
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.13
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.12
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.12
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.12
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.12
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.12
2o07_A	304	Spermidine synthase; structural genomics, structur	99.11
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.11
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.11
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.11
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.1
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.09
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.09
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.09
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.09
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.09
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.09
3ufb_A	530	Type I restriction-modification system methyltran	99.08
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.08
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.08
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.07
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.07
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.06
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.05
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.05
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.05
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.05
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.05
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.04
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.04
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.04
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.03
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.03
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.03
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.03
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.03
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.01
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.01
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.0
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.95
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.95
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.95
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.94
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.94
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.92
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.92
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.92
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.92
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.9
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.89
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.89
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.87
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.87
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.86
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.86
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.84
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.84
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.84
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.83
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.83
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.81
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.81
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.8
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.77
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.75
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.75
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.72
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.71
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.7
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.61
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.59
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.58
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.54
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.53
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.49
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.47
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.4
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.34
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.3
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.27
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.18
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.14
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.13
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.08
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.06
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.02
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.02
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.0
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.76
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.7
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.68
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.49
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.42
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.37
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.33
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.31
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.23
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.21
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.17
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.15
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.15
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.06
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.99
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.72
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.63
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.43
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	95.93
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.57
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	95.56
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	95.53
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	95.5
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	95.36
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	95.12
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.0
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.93
3imf_A	257	Short chain dehydrogenase; structural genomics, in	94.91
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.87
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.83
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.8
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	94.71
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.66
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.66
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	94.65
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.64
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	94.62
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	94.58
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	94.57
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	94.53
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.52
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	94.51
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	94.44
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.31
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	94.27
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.16
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	94.15
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	94.15
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.11
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.1
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	94.05
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	94.04
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.03
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	94.01
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.0
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	93.99
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	93.9
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	93.89
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.85
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	93.82
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	93.81
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	93.77
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	93.77
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	93.76
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	93.75
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	93.7
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.68
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	93.67
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	93.64
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	93.61
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.6
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	93.6
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	93.59
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	93.57
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	93.55
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.53
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	93.51
3cxt_A	291	Dehydrogenase with different specificities; rossma	93.5
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.5
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	93.47
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	93.41
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	93.4
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	93.38
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.35
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	93.29
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	93.27
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.27
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	93.24
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	93.24
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	93.22
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	93.18
3rih_A	293	Short chain dehydrogenase or reductase; structural	93.17
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	93.17
1xkq_A	280	Short-chain reductase family member (5D234); parra	93.16
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	93.14
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	93.11
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	93.0
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	92.98
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.93
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	92.93
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	92.9
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	92.86
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	92.82
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	92.81
4dqx_A	277	Probable oxidoreductase protein; structural genomi	92.79
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	92.78
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	92.77
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	92.76
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	92.76
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	92.74
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	92.7
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	92.59
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	92.59
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	92.58
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	92.52
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	92.5
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	92.48
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	92.48
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	92.48
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	92.47
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	92.47
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	92.44
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.41
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	92.39
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	92.38
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	92.36
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	92.35
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	92.35
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	92.32
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	92.32
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	92.32
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	92.29
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	92.28
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	92.25
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	92.24
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	92.2
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	92.18
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	92.16
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	92.15
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	92.12
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	92.12
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	92.1
1xhl_A	297	Short-chain dehydrogenase/reductase family member	92.09
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	92.01
1spx_A	278	Short-chain reductase family member (5L265); paral	92.01
1xq1_A	266	Putative tropinone reducatse; structural genomics,	91.98
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	91.9
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	91.87
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	91.82
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	91.81
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	91.81
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	91.8
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	91.76
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	91.63
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	91.54
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	91.53
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	91.53
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	91.53
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	91.49
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	91.41
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	91.37
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	91.37
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	91.32
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	91.29
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	91.25
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	91.21
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	91.16
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	91.13
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	91.1
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	91.09
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	91.06
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	91.04
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	90.97
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	90.95
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	90.92
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	90.86
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	90.85
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	90.83
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	90.8
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.62
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	90.6
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	90.53
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	90.52
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	90.52
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	90.5
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	90.47
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	90.46
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	90.45
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.33
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	90.3
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	90.17
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	90.09
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	90.07
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	90.04
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	90.01
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	89.82
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	89.78
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	89.78
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.77
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	89.75
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	89.73
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	89.73
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	89.67
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	89.66
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	89.47
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.46
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	89.38
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	89.28
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	89.26
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	89.23

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.97  E-value=3.7e-30  Score=226.90  Aligned_cols=166  Identities=29%  Similarity=0.448  Sum_probs=153.1

Q ss_pred             HHHHHHHHHhcCCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 023482          101 YHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR  180 (281)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~  180 (281)
                      ...+.+.+.++++.+++.+||||..++.+++.+++.+.+.++ +|||||||+|.+|..+++.+.+|+|+|+|+.+++.++
T Consensus         7 ~~~~~~~~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~   85 (271)
T 3fut_A            7 PQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLE   85 (271)
T ss_dssp             HHHHHHHHHHTTCCCSTTSSCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHH
T ss_pred             HHHHHHHHHhcCCCccccCCccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            345567788889999999999999999999999999999988 9999999999999999999999999999999999999


Q ss_pred             HHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhc
Q 023482          181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV  260 (281)
Q Consensus       181 ~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~  260 (281)
                      +++.. ++++++++|+.++++++           ...+|.||+|+||++.++++.+++.. ..+..+++|+|+|++.|++
T Consensus        86 ~~~~~-~~v~vi~~D~l~~~~~~-----------~~~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~QkEva~Rl~  152 (271)
T 3fut_A           86 ETLSG-LPVRLVFQDALLYPWEE-----------VPQGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQKEVAERMT  152 (271)
T ss_dssp             HHTTT-SSEEEEESCGGGSCGGG-----------SCTTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEEHHHHHHHT
T ss_pred             HhcCC-CCEEEEECChhhCChhh-----------ccCccEEEecCcccccHHHHHHHhcC-CCCCEEEEEeeeeeeeecc
Confidence            98873 58999999999988643           13589999999999999999999988 8889999999999999999


Q ss_pred             CCCCCCCccchhhhhhhhccC
Q 023482          261 EPSLRTSEYRPINIFVNFYSG  281 (281)
Q Consensus       261 ~~~pg~~~y~~~s~l~~~~~~  281 (281)
                       +.||++.|+++|+++|+||+
T Consensus       153 -A~pg~k~yg~lSv~~q~~~~  172 (271)
T 3fut_A          153 -ARPKTPAYGVLTLRVAHHAV  172 (271)
T ss_dssp             -CCTTSTTCSHHHHHHHHHEE
T ss_pred             -cCCCCCcccHHHHHHHHHee
Confidence             99999999999999999985

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.97  E-value=3.6e-30  Score=225.26  Aligned_cols=158  Identities=25%  Similarity=0.508  Sum_probs=139.7

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~  193 (281)
                      .+++.+||||..++.+++.+++.+.+.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++...+++++++
T Consensus         2 ~~~k~~GQnFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~   81 (255)
T 3tqs_A            2 PMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQ   81 (255)
T ss_dssp             -------CCEECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEE
T ss_pred             CCCCcCCcccccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEE
Confidence            46788999999999999999999999999999999999999999999998999999999999999999987666999999


Q ss_pred             cCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhh
Q 023482          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (281)
Q Consensus       194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s  273 (281)
                      +|+.++++++.        ...+.|| ||+|+||++.++++.++++....+..+++|+|+|++.|++ +.||++.|+++|
T Consensus        82 ~D~~~~~~~~~--------~~~~~~~-vv~NlPY~is~~il~~ll~~~~~~~~~~lm~QkEva~Rl~-a~pg~k~yg~ls  151 (255)
T 3tqs_A           82 NDALQFDFSSV--------KTDKPLR-VVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKEVVRRIT-AEVGSHDYGRLS  151 (255)
T ss_dssp             SCTTTCCGGGS--------CCSSCEE-EEEECCHHHHHHHHHHHHHTGGGEEEEEEEEEHHHHHHHT-CCTTSTTCSHHH
T ss_pred             cchHhCCHHHh--------ccCCCeE-EEecCCcccCHHHHHHHHhCCCChheEEEEEeHHHHHHhh-CCCCCCccchhh
Confidence            99999987531        1124577 9999999999999999999888899999999999999999 999999999999


Q ss_pred             hhhhhccC
Q 023482          274 IFVNFYSG  281 (281)
Q Consensus       274 ~l~~~~~~  281 (281)
                      +++|+||+
T Consensus       152 v~~q~~~~  159 (255)
T 3tqs_A          152 VMAQYFCD  159 (255)
T ss_dssp             HHHHHHEE
T ss_pred             heeeeeEE
Confidence            99999985

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.96  E-value=6.8e-29  Score=219.85  Aligned_cols=161  Identities=25%  Similarity=0.493  Sum_probs=140.8

Q ss_pred             CCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCE----EEEEeCCHHHHHHHHHHhcCCC
Q 023482          112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT----VLAIEKDQHMVGLVRERFASID  187 (281)
Q Consensus       112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~----v~gvD~s~~~l~~a~~~~~~~~  187 (281)
                      ++.+++.+||||..++.+++.+++.+.+.++++|||||||+|.+|..+++.+.+    |+|+|+|+.+++.++++.  .+
T Consensus        13 ~~~~~k~~GQ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~~   90 (279)
T 3uzu_A           13 GHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--GE   90 (279)
T ss_dssp             -----CCCSCCEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--GG
T ss_pred             CCCccccCCccccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--CC
Confidence            678899999999999999999999999999999999999999999999998666    999999999999999884  45


Q ss_pred             CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCC
Q 023482          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS  267 (281)
Q Consensus       188 ~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~  267 (281)
                      +++++++|+.++++++.. +     ......+.||+|+||++.++++.++++....+..+++|+|+|++.|++ +.||++
T Consensus        91 ~v~~i~~D~~~~~~~~~~-~-----~~~~~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~QkEva~Rl~-A~pg~k  163 (279)
T 3uzu_A           91 LLELHAGDALTFDFGSIA-R-----PGDEPSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMV-AEPGTK  163 (279)
T ss_dssp             GEEEEESCGGGCCGGGGS-C-----SSSSCCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEHHHHHHHT-CCTTST
T ss_pred             CcEEEECChhcCChhHhc-c-----cccCCceEEEEccCccccHHHHHHHHhccCCccEEEEEeeHHHHHHHh-CCCCCC
Confidence            899999999999876421 0     000145789999999999999999999888899999999999999999 999999


Q ss_pred             ccchhhhhhhhccC
Q 023482          268 EYRPINIFVNFYSG  281 (281)
Q Consensus       268 ~y~~~s~l~~~~~~  281 (281)
                      .|+++||++|+||+
T Consensus       164 ~yg~lSv~~q~~~~  177 (279)
T 3uzu_A          164 AFSRLSVMLQYRYV  177 (279)
T ss_dssp             TCCHHHHHHHHHEE
T ss_pred             cccHHHHHHhhheE
Confidence            99999999999985

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.95  E-value=5.4e-28  Score=215.46  Aligned_cols=159  Identities=28%  Similarity=0.424  Sum_probs=136.3

Q ss_pred             HHhcCCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC
Q 023482          108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID  187 (281)
Q Consensus       108 ~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~  187 (281)
                      ..++++.+++.+||||..++.+++.+++.+.+.++++|||||||+|.+|..+++.+.+|+|||+|+.+++.+++++...+
T Consensus        17 ~~~~~~~~~k~~GQnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~   96 (295)
T 3gru_A           17 RGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYN   96 (295)
T ss_dssp             -------------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCS
T ss_pred             hHhcCCCCccccCccccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCC
Confidence            45568899999999999999999999999999999999999999999999999998899999999999999999987556


Q ss_pred             CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCC
Q 023482          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS  267 (281)
Q Consensus       188 ~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~  267 (281)
                      +++++++|+.++++++            ..||+|++|+||++..+++.++++.  .+..+.+|.|+|++.|++ +.||++
T Consensus        97 ~v~vi~gD~l~~~~~~------------~~fD~Iv~NlPy~is~pil~~lL~~--~~~~~~lm~Q~eva~Rl~-a~pg~k  161 (295)
T 3gru_A           97 NIEIIWGDALKVDLNK------------LDFNKVVANLPYQISSPITFKLIKR--GFDLAVLMYQYEFAKRMV-AAAGTK  161 (295)
T ss_dssp             SEEEEESCTTTSCGGG------------SCCSEEEEECCGGGHHHHHHHHHHH--CCSEEEEEEEHHHHHHHH-CCTTST
T ss_pred             CeEEEECchhhCCccc------------CCccEEEEeCcccccHHHHHHHHhc--ccceEEEeeecccccEEE-ecCCCc
Confidence            9999999999987643            4689999999999999999999985  377899999999999999 999999


Q ss_pred             ccchhhhhhhhccC
Q 023482          268 EYRPINIFVNFYSG  281 (281)
Q Consensus       268 ~y~~~s~l~~~~~~  281 (281)
                      .|+++|+++|+||+
T Consensus       162 ~yg~Lsv~~q~~~~  175 (295)
T 3gru_A          162 DYGRLSVAVQSRAD  175 (295)
T ss_dssp             TCSHHHHHHHTTEE
T ss_pred             chhHHHHHHHhhcc
Confidence            99999999999985

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.93  E-value=4.2e-26  Score=198.91  Aligned_cols=152  Identities=30%  Similarity=0.447  Sum_probs=134.8

Q ss_pred             CCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCCCCeEE
Q 023482          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKV  191 (281)
Q Consensus       113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~  191 (281)
                      +.+++.|||||..++.+++.+++.+.+.++++|||||||+|.+|..+++.+ .+|+|+|+|+.+++.++++  ...++++
T Consensus         3 ~~~~k~~GQnfl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~~~~v~~   80 (249)
T 3ftd_A            3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--GDERLEV   80 (249)
T ss_dssp             -----CCCSSCEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--CCTTEEE
T ss_pred             CCCCCcccccccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--cCCCeEE
Confidence            567889999999999999999999999899999999999999999999995 7999999999999999887  3458999


Q ss_pred             EEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccch
Q 023482          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP  271 (281)
Q Consensus       192 ~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~  271 (281)
                      +++|+.++++++.         . + ...|++|+||++.++++.++++....+..+++|+|+|++.|++ +   ++.|++
T Consensus        81 i~~D~~~~~~~~~---------~-~-~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Qkeva~Rl~-a---~k~yg~  145 (249)
T 3ftd_A           81 INEDASKFPFCSL---------G-K-ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKLQ-G---KKDTGW  145 (249)
T ss_dssp             ECSCTTTCCGGGS---------C-S-SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEEHHHHHHHH-T---SSCCCH
T ss_pred             EEcchhhCChhHc---------c-C-CcEEEEECchhccHHHHHHHHhcCCCCceEEEEEeHHHHHHhh-c---cccccH
Confidence            9999999987541         1 2 3489999999999999999999888899999999999999999 4   999999


Q ss_pred             hhhhhhhccC
Q 023482          272 INIFVNFYSG  281 (281)
Q Consensus       272 ~s~l~~~~~~  281 (281)
                      +|+++|+||+
T Consensus       146 lsv~~q~~~~  155 (249)
T 3ftd_A          146 LSVFVRTFYD  155 (249)
T ss_dssp             HHHHHHHHEE
T ss_pred             HHHHHHhHEE
Confidence            9999999985

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.93  E-value=2.6e-26  Score=200.51  Aligned_cols=151  Identities=23%  Similarity=0.401  Sum_probs=133.8

Q ss_pred             ccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccc
Q 023482          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT--VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (281)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~--v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~  198 (281)
                      |||..++.+++.+++.+.+.++++|||||||+|.+|. ++. +.+  |+|+|+|+.|++.++++....++++++++|+.+
T Consensus         1 QnfL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~   78 (252)
T 1qyr_A            1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             CCCcCCHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhh
Confidence            6899999999999999999889999999999999999 654 567  999999999999999887655689999999999


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhhhhhhh
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF  278 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s~l~~~  278 (281)
                      +++.+. +|+      .+..+.||+|+||++.++++.+++.....+..+++|+|+|++.|++ +.||++.||++|+++|+
T Consensus        79 ~~~~~~-~~~------~~~~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~QkEva~Rl~-a~pG~k~yg~lsv~~q~  150 (252)
T 1qyr_A           79 FNFGEL-AEK------MGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQY  150 (252)
T ss_dssp             CCHHHH-HHH------HTSCEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEEHHHHHHHH-CCTTSTTCSHHHHHHHH
T ss_pred             CCHHHh-hcc------cCCceEEEECCCCCccHHHHHHHHhcCCCcceEEEEEeHHHHHHhc-CCCCCccccHHHHHHHH
Confidence            886532 111      1346899999999999999999998777889999999999999999 99999999999999999


Q ss_pred             ccC
Q 023482          279 YSG  281 (281)
Q Consensus       279 ~~~  281 (281)
                      +|+
T Consensus       151 ~~~  153 (252)
T 1qyr_A          151 YCN  153 (252)
T ss_dssp             HEE
T ss_pred             Hhe
Confidence            874

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.91  E-value=6.1e-24  Score=188.76  Aligned_cols=151  Identities=33%  Similarity=0.508  Sum_probs=135.6

Q ss_pred             CcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEE
Q 023482          116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVL  192 (281)
Q Consensus       116 ~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~  192 (281)
                      ++.+||+|..++.+++.+++.+.+.++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++....   ++++++
T Consensus         3 ~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~   82 (285)
T 1zq9_A            3 NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVL   82 (285)
T ss_dssp             -----CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEE
T ss_pred             CCCCCcCccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence            46789999999999999999999988999999999999999999999889999999999999999988654   389999


Q ss_pred             EcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchh
Q 023482          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPI  272 (281)
Q Consensus       193 ~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~  272 (281)
                      ++|+.++++              ..||.|++|+||++.++++.+++.....+..++.|+|+|++.|++ ..||++.|+.+
T Consensus        83 ~~D~~~~~~--------------~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~v-lkPGg~~y~~l  147 (285)
T 1zq9_A           83 VGDVLKTDL--------------PFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLV-AKPGDKLYCRL  147 (285)
T ss_dssp             ESCTTTSCC--------------CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHH-CCTTCTTCSHH
T ss_pred             Ecceecccc--------------hhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHh-cCCCCcccchh
Confidence            999998764              368999999999999999999998888899999999999999988 89999999999


Q ss_pred             hhhhhhccC
Q 023482          273 NIFVNFYSG  281 (281)
Q Consensus       273 s~l~~~~~~  281 (281)
                      +++.|++++
T Consensus       148 sv~~~~~~~  156 (285)
T 1zq9_A          148 SINTQLLAR  156 (285)
T ss_dssp             HHHHHHHEE
T ss_pred             hhhhhhhhh
Confidence            999998863

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.91  E-value=6.9e-24  Score=189.64  Aligned_cols=155  Identities=35%  Similarity=0.509  Sum_probs=130.6

Q ss_pred             CCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCe
Q 023482          112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQL  189 (281)
Q Consensus       112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v  189 (281)
                      +..+.+.+||+|..++.+++.+++.+.+.++++|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++....  +++
T Consensus        13 ~~~~~k~~Gq~fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v   92 (299)
T 2h1r_A           13 GRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNL   92 (299)
T ss_dssp             ----------CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCE
T ss_pred             cccchhccccceecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCce
Confidence            456788999999999999999999999888999999999999999999998889999999999999999987533  589


Q ss_pred             EEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCcc
Q 023482          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEY  269 (281)
Q Consensus       190 ~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y  269 (281)
                      +++++|+.++++              +.||+|++|+||++..+++.++++....+..+++++|++.+.|++ +.||...|
T Consensus        93 ~~~~~D~~~~~~--------------~~~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rll-a~~G~~~y  157 (299)
T 2h1r_A           93 EVYEGDAIKTVF--------------PKFDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERML-ANVGDSNY  157 (299)
T ss_dssp             EC----CCSSCC--------------CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHT-CCTTSTTC
T ss_pred             EEEECchhhCCc--------------ccCCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHh-cCCCCcch
Confidence            999999998763              468999999999999999999999888899999999999999999 99999999


Q ss_pred             chhhhhhhhccC
Q 023482          270 RPINIFVNFYSG  281 (281)
Q Consensus       270 ~~~s~l~~~~~~  281 (281)
                      +.+++.+|++++
T Consensus       158 ~~ls~~~~~~~~  169 (299)
T 2h1r_A          158 SRLTINVKLFCK  169 (299)
T ss_dssp             CHHHHHHHHHEE
T ss_pred             hHHHHHHHHhhc
Confidence            999999999873

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=99.89  E-value=4.2e-23  Score=187.60  Aligned_cols=163  Identities=18%  Similarity=0.199  Sum_probs=134.9

Q ss_pred             CCCCcccCccccCCHHHHHHHHHHhcCCC------CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhc
Q 023482          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQE------GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~~~------~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      ..+++.|||||+.++.+++.+++.+++.+      ++.|||||+|.|.+|..|++.  ..+|++||+|+.++...++.. 
T Consensus        24 ~~~kk~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-  102 (353)
T 1i4w_A           24 SKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-  102 (353)
T ss_dssp             CSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-
T ss_pred             cCCCCCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-
Confidence            35788999999999999999999998764      589999999999999999986  569999999999999998877 


Q ss_pred             CCCCeEEEEcCccccc-cccchhhHHHh--hc-----CC---CCccEEEEcCCCcccHHHHHHhccCCC--------Ccc
Q 023482          185 SIDQLKVLQEDFVKCH-IRSHMLSLFER--RK-----SS---SGFAKVVANIPFNISTDVIKQLLPMGD--------IFS  245 (281)
Q Consensus       185 ~~~~v~~~~gD~~~~~-~~d~~~d~v~~--~~-----~~---~~~d~Vi~n~P~~~~~~~~~~ll~~~~--------~~~  245 (281)
                      ..++++++++|+.+++ +.    +++..  +.     ..   .....||+|+||++.++++.+++....        .+.
T Consensus       103 ~~~~l~ii~~D~l~~~~~~----~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIstpil~~ll~~~~~~~~l~~~~~~  178 (353)
T 1i4w_A          103 EGSPLQILKRDPYDWSTYS----NLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKV  178 (353)
T ss_dssp             TTSSCEEECSCTTCHHHHH----HHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEE
T ss_pred             cCCCEEEEECCccchhhHH----HhhcccccccccccccccCCCceEEEEECCCchHHHHHHHHHHhccccccccccCcc
Confidence            4579999999997764 21    11100  00     00   012489999999999999999987422        346


Q ss_pred             eEEEeehhhHHHHhcCCCCCCCccchhhhhhhhccC
Q 023482          246 EVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG  281 (281)
Q Consensus       246 ~~~~~~~~~~a~rl~~~~pg~~~y~~~s~l~~~~~~  281 (281)
                      .+++|+|+|+|.||+ +.||++.|+++||++|+||+
T Consensus       179 ~m~lmvQkEvA~Rl~-A~PGsk~yg~LSV~~q~~~~  213 (353)
T 1i4w_A          179 KMLLWMPSTTARKLL-ARPGMHSRSKCSVVREAFTD  213 (353)
T ss_dssp             EEEEEEEHHHHHHHH-CCTTSTTCCHHHHHHHHHEE
T ss_pred             eEEEEeEHHHHHHhc-CCCCCccccHHHHHHHHHcc
Confidence            899999999999999 99999999999999999985

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.88  E-value=5.8e-22  Score=172.13  Aligned_cols=149  Identities=26%  Similarity=0.422  Sum_probs=125.4

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~  193 (281)
                      .+++.|||+|..++.+++.+++.+.+.++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++....+++++++
T Consensus         3 ~~~k~~gQ~fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~   82 (244)
T 1qam_A            3 EKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLN   82 (244)
T ss_dssp             -------CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEEC
T ss_pred             CCCccCCccccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEE
Confidence            46778999999999999999999998888999999999999999999999999999999999999999987667999999


Q ss_pred             cCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhh
Q 023482          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (281)
Q Consensus       194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s  273 (281)
                      +|+.++++.+           ...| .|++|+||++.++++.+++.. .....+++|+|+|.+.|+. +.|     |.++
T Consensus        83 ~D~~~~~~~~-----------~~~~-~vv~nlPy~~~~~~l~~~l~~-~~~~~~~lm~q~e~a~rll-~~~-----G~l~  143 (244)
T 1qam_A           83 KDILQFKFPK-----------NQSY-KIFGNIPYNISTDIIRKIVFD-SIADEIYLIVEYGFAKRLL-NTK-----RSLA  143 (244)
T ss_dssp             CCGGGCCCCS-----------SCCC-EEEEECCGGGHHHHHHHHHHS-CCCSEEEEEEEHHHHHHHT-CTT-----SHHH
T ss_pred             ChHHhCCccc-----------CCCe-EEEEeCCcccCHHHHHHHHhc-CCCCeEEEEEEHHHHHHHh-cCC-----cchh
Confidence            9999987642           1234 799999999999999999875 3467888999999999998 444     7899


Q ss_pred             hhhhhccC
Q 023482          274 IFVNFYSG  281 (281)
Q Consensus       274 ~l~~~~~~  281 (281)
                      ++++++|+
T Consensus       144 v~~~~~~~  151 (244)
T 1qam_A          144 LFLMAEVD  151 (244)
T ss_dssp             HHHTTTEE
T ss_pred             HHhhhhEe
Confidence            99998863

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.79  E-value=2.3e-20  Score=161.90  Aligned_cols=148  Identities=24%  Similarity=0.440  Sum_probs=125.9

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~  193 (281)
                      .+++.+||+|..++.+.+.+++.+.+.++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++....+++++++
T Consensus         2 ~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~   81 (245)
T 1yub_A            2 NKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIH   81 (245)
T ss_dssp             CCCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECC
T ss_pred             CCCcccCCCCCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEE
Confidence            46788999999999999999999998888999999999999999999998999999999999999988776445899999


Q ss_pred             cCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhh
Q 023482          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (281)
Q Consensus       194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s  273 (281)
                      +|+.++++.+           .+.| .|++|+||+...+++.+++.. .......+|+|++.+.|+.  .||    |.++
T Consensus        82 ~D~~~~~~~~-----------~~~f-~vv~n~Py~~~~~~~~~~~~~-~~~~~~~lm~q~e~a~rll--~~~----G~l~  142 (245)
T 1yub_A           82 QDILQFQFPN-----------KQRY-KIVGNIPYHLSTQIIKKVVFE-SRASDIYLIVEEGFYKRTL--DIH----RTLG  142 (245)
T ss_dssp             SCCTTTTCCC-----------SSEE-EEEEECCSSSCHHHHHHHHHH-CCCEEEEEEEESSHHHHHH--CGG----GSHH
T ss_pred             CChhhcCccc-----------CCCc-EEEEeCCccccHHHHHHHHhC-CCCCeEEEEeeHHHHHHHh--CCC----Cchh
Confidence            9999987531           2457 899999999999988888754 3456788899999999998  333    6788


Q ss_pred             hhhhhcc
Q 023482          274 IFVNFYS  280 (281)
Q Consensus       274 ~l~~~~~  280 (281)
                      +..+.++
T Consensus       143 v~~~~~~  149 (245)
T 1yub_A          143 LLLHTQV  149 (245)
T ss_dssp             HHTTTTB
T ss_pred             hhheehe
Confidence            7777665

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.59  E-value=6.6e-15  Score=125.49  Aligned_cols=110  Identities=17%  Similarity=0.190  Sum_probs=94.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (281)
                      ....+.+...+++.+...++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|+++....++++++++|+.+... 
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-  130 (231)
T 1vbf_A           52 NTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-  130 (231)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-
T ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-
Confidence            4678889999999999888999999999999999999998899999999999999999998866689999999987321 


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                                 ..+.||+|+++.+++...+.+.++++++|.+
T Consensus       131 -----------~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l  161 (231)
T 1vbf_A          131 -----------EEKPYDRVVVWATAPTLLCKPYEQLKEGGIM  161 (231)
T ss_dssp             -----------GGCCEEEEEESSBBSSCCHHHHHTEEEEEEE
T ss_pred             -----------cCCCccEEEECCcHHHHHHHHHHHcCCCcEE
Confidence                       1267999999987766666777888888765

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.56  E-value=4.6e-14  Score=118.20  Aligned_cols=102  Identities=29%  Similarity=0.405  Sum_probs=86.3

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhc---CCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC-C
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q  188 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~-~  188 (281)
                      .....+++ |.+++.+...++..+.   ..++.+|||+|||+|.++..++..+. +|+|+|+++.+++.|+++....+ +
T Consensus        20 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~   98 (207)
T 1wy7_A           20 NPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK   98 (207)
T ss_dssp             SCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS
T ss_pred             Ccccceee-ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            45567777 8888888888876654   45678999999999999999999864 89999999999999999987666 8


Q ss_pred             eEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccH
Q 023482          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (281)
Q Consensus       189 v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~  231 (281)
                      ++++++|+.+++               ..||+|++||||+...
T Consensus        99 ~~~~~~d~~~~~---------------~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           99 FKVFIGDVSEFN---------------SRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             EEEEESCGGGCC---------------CCCSEEEECCCCSSSS
T ss_pred             EEEEECchHHcC---------------CCCCEEEEcCCCcccc
Confidence            999999998864               4799999999997653

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.56  E-value=1.7e-14  Score=119.53  Aligned_cols=112  Identities=19%  Similarity=0.302  Sum_probs=84.3

Q ss_pred             ccCCHHHHHHHHHHhcC---CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~  196 (281)
                      ..+...+.+.+++.+..   .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++....  ++++++++|+
T Consensus        23 rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~  102 (189)
T 3p9n_A           23 RPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAV  102 (189)
T ss_dssp             ---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCH
T ss_pred             ccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccH
Confidence            34556666677666643   4778999999999999998888754 8999999999999999998654  3899999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccH----HHHH---H--hccCCCCc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST----DVIK---Q--LLPMGDIF  244 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~----~~~~---~--ll~~~~~~  244 (281)
                      .+++..          ...+.||+|++|+||+...    ..+.   +  ++++++.+
T Consensus       103 ~~~~~~----------~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l  149 (189)
T 3p9n_A          103 AAVVAA----------GTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVA  149 (189)
T ss_dssp             HHHHHH----------CCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEE
T ss_pred             HHHHhh----------ccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEE
Confidence            886421          1247899999999998742    2332   4  66777654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.55  E-value=2.4e-14  Score=120.21  Aligned_cols=110  Identities=16%  Similarity=0.201  Sum_probs=94.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~  200 (281)
                      +...+.+...+++.+...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++++...  .+++++++|+.+..
T Consensus        59 ~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  138 (210)
T 3lbf_A           59 TISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW  138 (210)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             EeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence            5668899999999999999999999999999999999999889999999999999999998754  38999999998865


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ..            .+.||+|+++..++...+.+.++++++|.+
T Consensus       139 ~~------------~~~~D~i~~~~~~~~~~~~~~~~L~pgG~l  170 (210)
T 3lbf_A          139 QA------------RAPFDAIIVTAAPPEIPTALMTQLDEGGIL  170 (210)
T ss_dssp             GG------------GCCEEEEEESSBCSSCCTHHHHTEEEEEEE
T ss_pred             cc------------CCCccEEEEccchhhhhHHHHHhcccCcEE
Confidence            32            368999999866655556677788888765

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.53  E-value=1.9e-13  Score=115.04  Aligned_cols=113  Identities=17%  Similarity=0.170  Sum_probs=91.8

Q ss_pred             cccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--C-CeEEEEcCccc
Q 023482          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDFVK  198 (281)
Q Consensus       122 ~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~-~v~~~~gD~~~  198 (281)
                      ..++.+.+...++..+.+.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++....  . +++++++|+.+
T Consensus        36 ~~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  115 (204)
T 3njr_A           36 GQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA  115 (204)
T ss_dssp             SCCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG
T ss_pred             CCCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh
Confidence            46778888889999999999999999999999999999999889999999999999999988654  3 79999999988


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcc-cHHHHHHhccCCCCcce
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLPMGDIFSE  246 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-~~~~~~~ll~~~~~~~~  246 (281)
                      ..            .....||+|+++..... .-..+.++++++|.+..
T Consensus       116 ~~------------~~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~  152 (204)
T 3njr_A          116 AL------------ADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVA  152 (204)
T ss_dssp             GG------------TTSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEE
T ss_pred             hc------------ccCCCCCEEEECCcccHHHHHHHHHhcCCCcEEEE
Confidence            32            12257999999875432 23444577888887643

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.53  E-value=3.4e-14  Score=119.36  Aligned_cols=105  Identities=16%  Similarity=0.056  Sum_probs=81.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC--------------CCCeEEEEc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--------------IDQLKVLQE  194 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~--------------~~~v~~~~g  194 (281)
                      ....++..+.+.++.+|||+|||+|..+..|++.|.+|+|||+|+.|++.|+++...              ..+++++++
T Consensus        10 ~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   89 (203)
T 1pjz_A           10 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   89 (203)
T ss_dssp             HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence            344445666777888999999999999999999999999999999999999988653              358999999


Q ss_pred             CccccccccchhhHHHhhcCCCCccEEEEcCCCcccH--------HHHHHhccCCCCc
Q 023482          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIF  244 (281)
Q Consensus       195 D~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~  244 (281)
                      |+.++++.+           .+.||+|+++..++...        ..+.+++++||.+
T Consensus        90 d~~~l~~~~-----------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~  136 (203)
T 1pjz_A           90 DFFALTARD-----------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSG  136 (203)
T ss_dssp             CCSSSTHHH-----------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEE
T ss_pred             ccccCCccc-----------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEE
Confidence            999987532           14689999865553321        2345888888863

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.52  E-value=6.5e-14  Score=119.23  Aligned_cols=94  Identities=16%  Similarity=0.248  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCcccccc
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHI  201 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~  201 (281)
                      .++...+.+.....+.++.+|||+||| +|.++..++.. +.+|+|+|+++.+++.|+++...++ +++++++|+..+..
T Consensus        39 ~p~~~~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~  118 (230)
T 3evz_A           39 VTTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKG  118 (230)
T ss_dssp             CCCHHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTT
T ss_pred             eCCCchhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhh
Confidence            344444555344445678899999999 99999999998 8899999999999999999987665 89999999754321


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                                 ...+.||+|++||||..
T Consensus       119 -----------~~~~~fD~I~~npp~~~  135 (230)
T 3evz_A          119 -----------VVEGTFDVIFSAPPYYD  135 (230)
T ss_dssp             -----------TCCSCEEEEEECCCCC-
T ss_pred             -----------cccCceeEEEECCCCcC
Confidence                       22378999999999965

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.51  E-value=2.9e-13  Score=113.23  Aligned_cols=112  Identities=13%  Similarity=0.202  Sum_probs=91.9

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC  199 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~  199 (281)
                      ++.+++...++..+.+.++.+|||+|||+|.++..+++.+  .+|+|+|+++.+++.|+++....  ++++++++|+.+.
T Consensus        23 ~~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  102 (204)
T 3e05_A           23 ITKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG  102 (204)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT
T ss_pred             CChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh
Confidence            3788888999999999999999999999999999999986  79999999999999999987644  4899999999765


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCcccHHHH---HHhccCCCCcceE
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIFSEV  247 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~---~~ll~~~~~~~~~  247 (281)
                      ..            ..+.||+|+++.++.....++   .++++++|.+...
T Consensus       103 ~~------------~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  141 (204)
T 3e05_A          103 LD------------DLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLN  141 (204)
T ss_dssp             CT------------TSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             hh------------cCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEE
Confidence            32            226799999998766444444   4778888876443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.48  E-value=1.9e-13  Score=119.58  Aligned_cols=94  Identities=23%  Similarity=0.313  Sum_probs=75.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHh
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ++++.+|||+|||+|..+..+++.    +++|+|||+|+.|++.|++++...+   +++++++|+.++++          
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~----------  137 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----------  137 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----------
Confidence            457889999999999999999985    5699999999999999999987543   89999999999875          


Q ss_pred             hcCCCCccEEEEcCCCcccH--------HHHHHhccCCCCcce
Q 023482          212 RKSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIFSE  246 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~~~  246 (281)
                          +.+|+|+++.-++...        ..+.++|++||.+..
T Consensus       138 ----~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii  176 (261)
T 4gek_A          138 ----ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVL  176 (261)
T ss_dssp             ----CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ----cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEE
Confidence                4589999986654321        223477888887643

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.48  E-value=2.8e-13  Score=112.99  Aligned_cols=95  Identities=19%  Similarity=0.262  Sum_probs=75.4

Q ss_pred             ccCccccCCHHHHHHHHHHhc---CCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482          118 SLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (281)
Q Consensus       118 ~~g~~~~~~~~~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~  193 (281)
                      .+++ +.++..+...++..+.   ..++.+|||+|||+|.++..++..+. +|+|+|+++.+++.|+++..   ++++++
T Consensus        26 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~  101 (200)
T 1ne2_A           26 YLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---GVNFMV  101 (200)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---TSEEEE
T ss_pred             ceee-cCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC---CCEEEE
Confidence            3444 7777877777776653   45678999999999999999998865 79999999999999999876   799999


Q ss_pred             cCccccccccchhhHHHhhcCCCCccEEEEcCCCcccH
Q 023482          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (281)
Q Consensus       194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~  231 (281)
                      +|+.+++               +.||+|++|+||++..
T Consensus       102 ~d~~~~~---------------~~~D~v~~~~p~~~~~  124 (200)
T 1ne2_A          102 ADVSEIS---------------GKYDTWIMNPPFGSVV  124 (200)
T ss_dssp             CCGGGCC---------------CCEEEEEECCCC----
T ss_pred             CcHHHCC---------------CCeeEEEECCCchhcc
Confidence            9998864               5799999999997654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.48  E-value=2.5e-13  Score=111.72  Aligned_cols=99  Identities=15%  Similarity=0.265  Sum_probs=76.2

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++....  ++++++++|+.+++.           ...
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~-----------~~~   87 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH-----------YVR   87 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG-----------TCC
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh-----------hcc
Confidence            3457889999999999999999999889999999999999999988644  489999988877542           123


Q ss_pred             CCccEEEEcCCCccc--------H-------HHHHHhccCCCCcceE
Q 023482          216 SGFAKVVANIPFNIS--------T-------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       216 ~~~d~Vi~n~P~~~~--------~-------~~~~~ll~~~~~~~~~  247 (281)
                      +.||+|++|++|...        .       ..+.+++++||.+...
T Consensus        88 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  134 (185)
T 3mti_A           88 EPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM  134 (185)
T ss_dssp             SCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence            679999999766332        1       3344778888876443

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.47  E-value=4.7e-13  Score=112.68  Aligned_cols=110  Identities=15%  Similarity=0.174  Sum_probs=91.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~  197 (281)
                      ....+.+...+++.+...++.+|||||||+|.++..+++..   .+|+++|+++.+++.|+++....  .+++++++|+.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~  138 (215)
T 2yxe_A           59 TISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGT  138 (215)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGG
T ss_pred             EeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence            45668889999999988889999999999999999999874   79999999999999999987643  47999999985


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ...            ...+.||+|+++.+++.....+.++++++|.+
T Consensus       139 ~~~------------~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l  173 (215)
T 2yxe_A          139 LGY------------EPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKL  173 (215)
T ss_dssp             GCC------------GGGCCEEEEEESSBBSSCCHHHHHTEEEEEEE
T ss_pred             cCC------------CCCCCeeEEEECCchHHHHHHHHHHcCCCcEE
Confidence            432            11367999999988777667778888887765

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.47  E-value=8.9e-14  Score=116.73  Aligned_cols=108  Identities=18%  Similarity=0.200  Sum_probs=80.6

Q ss_pred             CCHHHHHHHHHHhcCC-CCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcccc-
Q 023482          125 LNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC-  199 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~-  199 (281)
                      +...+.+.+++.+... ++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++....+  +++++++|+.+. 
T Consensus        37 ~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~  116 (202)
T 2fpo_A           37 TTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL  116 (202)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred             CHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH
Confidence            3445566666665542 678999999999999999888764 99999999999999999987554  899999999873 


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCccc--HHHHHHh-----ccCCCCc
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQL-----LPMGDIF  244 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~--~~~~~~l-----l~~~~~~  244 (281)
                      +.            ..+.||+|++++||+..  ..++..+     +++++.+
T Consensus       117 ~~------------~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l  156 (202)
T 2fpo_A          117 AQ------------KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALI  156 (202)
T ss_dssp             SS------------CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEE
T ss_pred             hh------------cCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEE
Confidence            32            23679999999997632  2344433     5555544

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.47  E-value=4.2e-13  Score=114.91  Aligned_cols=112  Identities=13%  Similarity=0.230  Sum_probs=87.9

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~--~~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~  197 (281)
                      ....+.....+...+...++.+|||||||+|+++..++.  .+.+|+++|+++.+++.|++++...+   +++++++|+.
T Consensus        53 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (232)
T 3ntv_A           53 PIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNAL  132 (232)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGG
T ss_pred             CCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH
Confidence            445677777777777777888999999999999999998  46799999999999999999987553   8999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHH---HhccCCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~---~ll~~~~~~  244 (281)
                      +.....         . .+.||+|+.+.+......++.   ++++++|.+
T Consensus       133 ~~~~~~---------~-~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~l  172 (232)
T 3ntv_A          133 EQFENV---------N-DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLV  172 (232)
T ss_dssp             GCHHHH---------T-TSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEE
T ss_pred             HHHHhh---------c-cCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEE
Confidence            752100         1 368999999987766555544   566776654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.47  E-value=3.8e-13  Score=117.02  Aligned_cols=112  Identities=13%  Similarity=0.034  Sum_probs=83.7

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc-------------------C
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA-------------------S  185 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~-------------------~  185 (281)
                      ..+.+.+.+...+...++.+|||+|||+|..+..|++.|.+|+|||+|+.|++.|+++..                   .
T Consensus        52 ~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~  131 (252)
T 2gb4_A           52 GHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSS  131 (252)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccC
Confidence            345555555544444577899999999999999999999999999999999999987663                   1


Q ss_pred             CCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc--------HHHHHHhccCCCCcceE
Q 023482          186 IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS--------TDVIKQLLPMGDIFSEV  247 (281)
Q Consensus       186 ~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~--------~~~~~~ll~~~~~~~~~  247 (281)
                      ..+++++++|+.++++.           ..+.||+|+++..+...        -..+.+++++||.+-..
T Consensus       132 ~~~i~~~~~D~~~l~~~-----------~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          132 SGSISLYCCSIFDLPRA-----------NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             TSSEEEEESCTTTGGGG-----------CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCceEEEECccccCCcc-----------cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            24899999999998753           12679999986544221        12345788888876433

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.47  E-value=1.7e-13  Score=119.35  Aligned_cols=89  Identities=15%  Similarity=0.246  Sum_probs=72.0

Q ss_pred             HHHHHhcCC-CCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchh
Q 023482          132 QLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       132 ~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~  206 (281)
                      .+...+... ++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++..++   +++++++|+.+++..    
T Consensus        39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~----  114 (259)
T 3lpm_A           39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL----  114 (259)
T ss_dssp             HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT----
T ss_pred             HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh----
Confidence            344555666 788999999999999999999854 99999999999999999987553   799999999987521    


Q ss_pred             hHHHhhcCCCCccEEEEcCCCccc
Q 023482          207 SLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                            ...+.||+|++||||...
T Consensus       115 ------~~~~~fD~Ii~npPy~~~  132 (259)
T 3lpm_A          115 ------IPKERADIVTCNPPYFAT  132 (259)
T ss_dssp             ------SCTTCEEEEEECCCC---
T ss_pred             ------hccCCccEEEECCCCCCC
Confidence                  124789999999999544

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.47  E-value=6.9e-13  Score=108.07  Aligned_cols=108  Identities=15%  Similarity=0.200  Sum_probs=88.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~  200 (281)
                      ....+.+...+++.+...++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++....  ++++++++|+.+ +
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~   95 (183)
T 2yxd_A           17 PITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V   95 (183)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H
T ss_pred             CcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c
Confidence            5677888999999998888899999999999999999997779999999999999999998755  389999999987 4


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhcc-CCCCc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP-MGDIF  244 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~-~~~~~  244 (281)
                      ++            .+.||+|+++.+ .....++..+.. ++|.+
T Consensus        96 ~~------------~~~~D~i~~~~~-~~~~~~l~~~~~~~gG~l  127 (183)
T 2yxd_A           96 LD------------KLEFNKAFIGGT-KNIEKIIEILDKKKINHI  127 (183)
T ss_dssp             GG------------GCCCSEEEECSC-SCHHHHHHHHHHTTCCEE
T ss_pred             cc------------CCCCcEEEECCc-ccHHHHHHHHhhCCCCEE
Confidence            32            267999999988 555555554433 45544

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.46  E-value=1.2e-13  Score=112.82  Aligned_cols=84  Identities=24%  Similarity=0.251  Sum_probs=68.0

Q ss_pred             CCHHHHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccc
Q 023482          125 LNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (281)
                      +++.....+++.+..  .++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++.       ..+++++++|+.+ ++.
T Consensus         5 ~P~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~-------~~~~~~~~~d~~~-~~~   75 (170)
T 3q87_B            5 EPGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES-------HRGGNLVRADLLC-SIN   75 (170)
T ss_dssp             CCCHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT-------CSSSCEEECSTTT-TBC
T ss_pred             CcCccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc-------ccCCeEEECChhh-hcc
Confidence            344445555555544  567799999999999999999999 99999999999987       3488999999987 432


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                                  .+.||+|++|+||.+
T Consensus        76 ------------~~~fD~i~~n~~~~~   90 (170)
T 3q87_B           76 ------------QESVDVVVFNPPYVP   90 (170)
T ss_dssp             ------------GGGCSEEEECCCCBT
T ss_pred             ------------cCCCCEEEECCCCcc
Confidence                        267999999999984

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.46  E-value=7e-14  Score=119.96  Aligned_cols=106  Identities=18%  Similarity=0.226  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccc
Q 023482          125 LNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (281)
Q Consensus       125 ~~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~  200 (281)
                      .+..+...+...+. ..++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++++...+   +++++++|+.+++
T Consensus        61 ~~~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  140 (241)
T 3gdh_A           61 TPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA  140 (241)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG
T ss_pred             CHHHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc
Confidence            34445566555543 2367899999999999999999999999999999999999999987554   8999999998875


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcccHHH------HHHhccCCCC
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDV------IKQLLPMGDI  243 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~------~~~ll~~~~~  243 (281)
                      .             ...||+|++|+||+.....      +.++++++|.
T Consensus       141 ~-------------~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~  176 (241)
T 3gdh_A          141 S-------------FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGF  176 (241)
T ss_dssp             G-------------GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHH
T ss_pred             c-------------cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcce
Confidence            2             2689999999999865532      2355566654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.46  E-value=1.7e-13  Score=119.53  Aligned_cols=104  Identities=13%  Similarity=0.122  Sum_probs=83.9

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccch
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~  205 (281)
                      ++++.+.+.+...  .+.+|||||||+|.++..|++.+.+|+|+|+|+.|++.|++    ..+++++++|++++++++  
T Consensus        26 p~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~----~~~v~~~~~~~e~~~~~~--   97 (257)
T 4hg2_A           26 PRALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR----HPRVTYAVAPAEDTGLPP--   97 (257)
T ss_dssp             CHHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC----CTTEEEEECCTTCCCCCS--
T ss_pred             HHHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh----cCCceeehhhhhhhcccC--
Confidence            5677777777654  45689999999999999999999999999999999987753    358999999999998754  


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCcccH-----HHHHHhccCCCCcceE
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNIST-----DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~~~-----~~~~~ll~~~~~~~~~  247 (281)
                                ++||+|+++..+++..     ..+.++|++||.+...
T Consensus        98 ----------~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~  134 (257)
T 4hg2_A           98 ----------ASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAV  134 (257)
T ss_dssp             ----------SCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----------CcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEE
Confidence                      6789999876665543     3456889999987443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.46  E-value=1e-13  Score=116.30  Aligned_cols=107  Identities=18%  Similarity=0.247  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhcCC-CCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcCcccccc
Q 023482          128 EINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHI  201 (281)
Q Consensus       128 ~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~----~~v~~~~gD~~~~~~  201 (281)
                      .+.+.+++.+... ++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++....    ++++++++|+.++..
T Consensus        39 ~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~  118 (201)
T 2ift_A           39 RVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK  118 (201)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHH
Confidence            4455555555432 67899999999999999888776 49999999999999999988643    389999999987532


Q ss_pred             ccchhhHHHhhcCCCC-ccEEEEcCCCcccH--HHHHHh-----ccCCCCc
Q 023482          202 RSHMLSLFERRKSSSG-FAKVVANIPFNIST--DVIKQL-----LPMGDIF  244 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~-~d~Vi~n~P~~~~~--~~~~~l-----l~~~~~~  244 (281)
                      .          ...+. ||+|++|+||....  .++..+     ++++|.+
T Consensus       119 ~----------~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l  159 (201)
T 2ift_A          119 Q----------PQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALI  159 (201)
T ss_dssp             S----------CCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEE
T ss_pred             h----------hccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEE
Confidence            1          12367 99999999976432  344444     6666654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.46  E-value=5.3e-13  Score=121.45  Aligned_cols=95  Identities=21%  Similarity=0.220  Sum_probs=83.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~  197 (281)
                      ....+.++..++..+...++.+|||+|||+|.+++.++..+   .+|+|+|+|+.+++.|+++....+  +++++++|+.
T Consensus       185 a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~  264 (354)
T 3tma_A          185 GSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADAR  264 (354)
T ss_dssp             CSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGG
T ss_pred             CCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChh
Confidence            44567788888998888888999999999999999999864   799999999999999999988665  8999999999


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      +++..            ...||+|++||||..
T Consensus       265 ~~~~~------------~~~~D~Ii~npPyg~  284 (354)
T 3tma_A          265 HLPRF------------FPEVDRILANPPHGL  284 (354)
T ss_dssp             GGGGT------------CCCCSEEEECCCSCC
T ss_pred             hCccc------------cCCCCEEEECCCCcC
Confidence            98743            256899999999965

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.45  E-value=6e-13  Score=113.06  Aligned_cols=115  Identities=14%  Similarity=0.240  Sum_probs=91.2

Q ss_pred             ccCCHHHHHHHHHHh--cCCCCCEEEEEcCCccHHHHHHHHcC-------CEEEEEeCCHHHHHHHHHHhcCC-------
Q 023482          123 YMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERFASI-------  186 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~G~~t~~la~~~-------~~v~gvD~s~~~l~~a~~~~~~~-------  186 (281)
                      .+..+.+...+++.+  .+.++.+|||||||+|+++..+++..       .+|+++|+++.+++.|+++....       
T Consensus        60 ~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~  139 (227)
T 2pbf_A           60 TISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKI  139 (227)
T ss_dssp             EECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSS
T ss_pred             ccCChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcccccc
Confidence            466788888888888  47788999999999999999999874       39999999999999999987643       


Q ss_pred             CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcc
Q 023482          187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       187 ~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~  245 (281)
                      .+++++++|+.+.... ..       ...+.||+|+.+.+++.....+.++++++|.+-
T Consensus       140 ~~v~~~~~d~~~~~~~-~~-------~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv  190 (227)
T 2pbf_A          140 DNFKIIHKNIYQVNEE-EK-------KELGLFDAIHVGASASELPEILVDLLAENGKLI  190 (227)
T ss_dssp             TTEEEEECCGGGCCHH-HH-------HHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEE
T ss_pred             CCEEEEECChHhcccc-cC-------ccCCCcCEEEECCchHHHHHHHHHhcCCCcEEE
Confidence            4899999999875300 00       012679999999887766677778888888663

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.45  E-value=2.9e-13  Score=117.40  Aligned_cols=106  Identities=19%  Similarity=0.232  Sum_probs=85.3

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhh
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ...+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++....  ++++++++|+.++++++    
T Consensus        26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~----  101 (260)
T 1vl5_A           26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD----  101 (260)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT----
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC----
Confidence            456777777778899999999999999999998889999999999999999987644  37999999999988643    


Q ss_pred             HHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482          208 LFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~  247 (281)
                              +.||+|+++..+++..      ..+.++++++|.+...
T Consensus       102 --------~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~  139 (260)
T 1vl5_A          102 --------ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLV  139 (260)
T ss_dssp             --------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence                    6799999986654332      3345788888876544

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.45  E-value=4.9e-13  Score=125.05  Aligned_cols=104  Identities=19%  Similarity=0.208  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccch
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~  205 (281)
                      .+.+.+++.+...++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|+++...++  |++++++|+.+..... .
T Consensus       273 ~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~-~  351 (433)
T 1uwv_A          273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ-P  351 (433)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS-G
T ss_pred             HHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhh-h
Confidence            456667777777778899999999999999999998899999999999999999987554  8999999998732100 0


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCcccHHHHHHhcc
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP  239 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~  239 (281)
                             ...+.||+|++||||....+++..+..
T Consensus       352 -------~~~~~fD~Vv~dPPr~g~~~~~~~l~~  378 (433)
T 1uwv_A          352 -------WAKNGFDKVLLDPARAGAAGVMQQIIK  378 (433)
T ss_dssp             -------GGTTCCSEEEECCCTTCCHHHHHHHHH
T ss_pred             -------hhcCCCCEEEECCCCccHHHHHHHHHh
Confidence                   123579999999999877777777654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.44  E-value=5.8e-13  Score=115.22  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccch
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~  205 (281)
                      ......+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.|+++.....+++++++|+.+++++   
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---  117 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFP---  117 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCC---
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCC---
Confidence            456777888888888899999999999999999997 8899999999999999999887657999999999998754   


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCccc--H------HHHHHhccCCCCcceEE
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNIS--T------DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~~--~------~~~~~ll~~~~~~~~~~  248 (281)
                               .+.||+|+++..++..  .      ..+.++++++|.+....
T Consensus       118 ---------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          118 ---------ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             ---------TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence                     3789999998766554  2      33347788888765444

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.44  E-value=9.5e-13  Score=112.74  Aligned_cols=110  Identities=14%  Similarity=0.220  Sum_probs=90.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC  199 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~  199 (281)
                      ....+.+...+++.+...++.+|||||||+|.++..+++.. .+|+++|+++.+++.|+++....  .+++++.+|+ ..
T Consensus        73 ~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~  151 (235)
T 1jg1_A           73 TVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SK  151 (235)
T ss_dssp             EECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GG
T ss_pred             eeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-cc
Confidence            45678899999999998889999999999999999999985 89999999999999999988654  3799999998 33


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ++.           ....||+|+++.+.....+.+.++++++|.+
T Consensus       152 ~~~-----------~~~~fD~Ii~~~~~~~~~~~~~~~L~pgG~l  185 (235)
T 1jg1_A          152 GFP-----------PKAPYDVIIVTAGAPKIPEPLIEQLKIGGKL  185 (235)
T ss_dssp             CCG-----------GGCCEEEEEECSBBSSCCHHHHHTEEEEEEE
T ss_pred             CCC-----------CCCCccEEEECCcHHHHHHHHHHhcCCCcEE
Confidence            332           1245999999877766656667777777765

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.44  E-value=5.4e-13  Score=122.42  Aligned_cols=95  Identities=18%  Similarity=0.224  Sum_probs=81.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~  197 (281)
                      ....+.+...++... ..++.+|||+|||+|.+++.++..+.  +|+|+|+|+.+++.|+++....+   +++++++|+.
T Consensus       200 a~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~  278 (373)
T 3tm4_A          200 AHLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT  278 (373)
T ss_dssp             TCCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG
T ss_pred             CCccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence            345778888888888 77888999999999999999999876  99999999999999999987654   8999999999


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                      ++++.            .+.||+|++||||...
T Consensus       279 ~~~~~------------~~~fD~Ii~npPyg~r  299 (373)
T 3tm4_A          279 QLSQY------------VDSVDFAISNLPYGLK  299 (373)
T ss_dssp             GGGGT------------CSCEEEEEEECCCC--
T ss_pred             hCCcc------------cCCcCEEEECCCCCcc
Confidence            98743            3679999999999753

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.44  E-value=8e-13  Score=107.55  Aligned_cols=110  Identities=13%  Similarity=0.177  Sum_probs=87.6

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~  198 (281)
                      ++.+++...+++.+.+.++.+|||+|||+|.++..++..  +.+|+|+|+++.+++.|+++....+   ++ ++++|+.+
T Consensus         8 ~t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~   86 (178)
T 3hm2_A            8 LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR   86 (178)
T ss_dssp             SHHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred             ccHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence            456678888899998888899999999999999999987  6799999999999999999987653   78 88899865


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcc--cHHHHHHhccCCCCcc
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMGDIFS  245 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~--~~~~~~~ll~~~~~~~  245 (281)
                       +++          ...+.||+|+++.+++.  .-..+.++++++|.+.
T Consensus        87 -~~~----------~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~  124 (178)
T 3hm2_A           87 -AFD----------DVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLV  124 (178)
T ss_dssp             -GGG----------GCCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEE
T ss_pred             -hhh----------ccCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEE
Confidence             221          11267999999887765  3455567888888764

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.44  E-value=4.2e-13  Score=117.10  Aligned_cols=93  Identities=23%  Similarity=0.303  Sum_probs=70.4

Q ss_pred             HHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC---CC---CeEEEEcCccccccccc
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---ID---QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~---~~---~v~~~~gD~~~~~~~d~  204 (281)
                      +...+...++.+|||+|||+|.++..++..  +.+|+|||+++.+++.|++++..   ++   +++++++|+.+....  
T Consensus        28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~--  105 (260)
T 2ozv_A           28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKA--  105 (260)
T ss_dssp             HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHH--
T ss_pred             HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhh--
Confidence            344455667789999999999999999988  46999999999999999999876   53   699999999886210  


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                         ........+.||+|++||||...
T Consensus       106 ---~~~~~~~~~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          106 ---RVEAGLPDEHFHHVIMNPPYNDA  128 (260)
T ss_dssp             ---HHHTTCCTTCEEEEEECCCC---
T ss_pred             ---hhhhccCCCCcCEEEECCCCcCC
Confidence               00000123689999999999764

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.43  E-value=1e-12  Score=113.37  Aligned_cols=112  Identities=15%  Similarity=0.212  Sum_probs=88.8

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~  199 (281)
                      ...+..+..+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.|+++....   ++++++++|+.++
T Consensus        19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~   98 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   98 (256)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC
Confidence            345677888899998889999999999999999999987 779999999999999999987644   3799999999988


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCccc---H---HHHHHhccCCCCcceEE
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS---T---DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~---~---~~~~~ll~~~~~~~~~~  248 (281)
                      ++ +            +.||+|+++..++..   .   ..+.+++++||.+....
T Consensus        99 ~~-~------------~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A           99 VA-N------------EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             CC-S------------SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             Cc-C------------CCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            64 2            679999986544332   2   23346777777664433

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.43  E-value=7.4e-13  Score=108.08  Aligned_cols=91  Identities=14%  Similarity=0.294  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccc
Q 023482          127 SEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHI  201 (281)
Q Consensus       127 ~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~  201 (281)
                      ..+.+.+++.+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++....+   +++++++|+.+...
T Consensus        16 ~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (177)
T 2esr_A           16 DKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID   95 (177)
T ss_dssp             --CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH
Confidence            345666777766 5677899999999999999999885 599999999999999999987653   79999999987311


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                                 ...+.||+|++|+||.
T Consensus        96 -----------~~~~~fD~i~~~~~~~  111 (177)
T 2esr_A           96 -----------CLTGRFDLVFLDPPYA  111 (177)
T ss_dssp             -----------HBCSCEEEEEECCSSH
T ss_pred             -----------hhcCCCCEEEECCCCC
Confidence                       1225699999999984

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.43  E-value=1.4e-12  Score=107.11  Aligned_cols=106  Identities=18%  Similarity=0.303  Sum_probs=86.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--C--eEEEEcCcccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHIRS  203 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~--v~~~~gD~~~~~~~d  203 (281)
                      ...+.+++.+...++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++....+  +  ++++++|+.+..   
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---  115 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV---  115 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC---
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc---
Confidence            678888898888888999999999999999999988899999999999999999886543  4  999999998732   


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCcccH----HHH---HHhccCCCCcce
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNIST----DVI---KQLLPMGDIFSE  246 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~~~----~~~---~~ll~~~~~~~~  246 (281)
                                ..+.||+|++++||+...    .++   .++++++|.+-.
T Consensus       116 ----------~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  155 (194)
T 1dus_A          116 ----------KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             ----------TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ----------ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEE
Confidence                      236799999999998632    222   366777776533

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.43  E-value=4e-13  Score=120.50  Aligned_cols=109  Identities=15%  Similarity=0.168  Sum_probs=92.1

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~  198 (281)
                      ...+.....+++.+.+.++.+|||||||+|.++..+++.+   .+|+|+|+++++++.|+++....  .+++++++|+.+
T Consensus        58 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~  137 (317)
T 1dl5_A           58 SSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY  137 (317)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred             ccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh
Confidence            3567889999999999899999999999999999999874   46999999999999999998654  379999999988


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      .+..            .+.||+|+++.+++.....+.++++++|.+
T Consensus       138 ~~~~------------~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~l  171 (317)
T 1dl5_A          138 GVPE------------FSPYDVIFVTVGVDEVPETWFTQLKEGGRV  171 (317)
T ss_dssp             CCGG------------GCCEEEEEECSBBSCCCHHHHHHEEEEEEE
T ss_pred             cccc------------CCCeEEEEEcCCHHHHHHHHHHhcCCCcEE
Confidence            5432            267999999988877767778888888765

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.43  E-value=4e-13  Score=108.53  Aligned_cols=114  Identities=14%  Similarity=0.153  Sum_probs=84.6

Q ss_pred             ccCCHHHHHHHHHHhcCC--CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCcccc
Q 023482          123 YMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~  199 (281)
                      ..+...+.+.++..+...  ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++....+ +++++++|+.+.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~  100 (171)
T 1ws6_A           21 RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVF  100 (171)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHH
Confidence            445567777777776542  67899999999999999999998889999999999999999887555 899999999873


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCc-ccHHHHH-----HhccCCCCc
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN-ISTDVIK-----QLLPMGDIF  244 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~-~~~~~~~-----~ll~~~~~~  244 (281)
                      ...     .-   ...+.||+|++|+||+ .....+.     ++++++|.+
T Consensus       101 ~~~-----~~---~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~  143 (171)
T 1ws6_A          101 LPE-----AK---AQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLY  143 (171)
T ss_dssp             HHH-----HH---HTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEE
T ss_pred             HHh-----hh---ccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEE
Confidence            210     00   1124799999999984 3333443     445555543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.43  E-value=2.3e-13  Score=114.54  Aligned_cols=105  Identities=16%  Similarity=0.160  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      .....+...+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++....++++++++|+.+++.      
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~------  111 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFST------  111 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCC------
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCC------
Confidence            44455555666667789999999999999999999889999999999999999999877799999999998762      


Q ss_pred             HHHhhcCCCCccEEEEcCCCcccH---------HHHHHhccCCCCcc
Q 023482          208 LFERRKSSSGFAKVVANIPFNIST---------DVIKQLLPMGDIFS  245 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~~---------~~~~~ll~~~~~~~  245 (281)
                             .+.||+|+++..++...         ..+.++++++|.+.
T Consensus       112 -------~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~  151 (216)
T 3ofk_A          112 -------AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV  151 (216)
T ss_dssp             -------SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             -------CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence                   26899999986654332         12346777777654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.42  E-value=9e-13  Score=111.20  Aligned_cols=107  Identities=16%  Similarity=0.271  Sum_probs=82.9

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC-------CeEEEEcCc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-------QLKVLQEDF  196 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~-------~v~~~~gD~  196 (281)
                      .+...+.+.+.+...++.+|||+|||+|.++..+++.+  .+|+|+|+++.+++.|++++...+       +++++++|+
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (217)
T 3jwh_A           14 NQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL   93 (217)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc
Confidence            34556677777776778899999999999999999974  599999999999999999986543       799999998


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccH-H-------HHHHhccCCCCc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-D-------VIKQLLPMGDIF  244 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-~-------~~~~ll~~~~~~  244 (281)
                      ...+..            .+.||+|+++..++... +       .+.+++++++.+
T Consensus        94 ~~~~~~------------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l  137 (217)
T 3jwh_A           94 TYQDKR------------FHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVI  137 (217)
T ss_dssp             TSCCGG------------GCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEE
T ss_pred             cccccc------------CCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEE
Confidence            766533            26799999976654322 1       234677777743

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.42  E-value=6.9e-14  Score=117.00  Aligned_cols=94  Identities=15%  Similarity=0.276  Sum_probs=58.5

Q ss_pred             HHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccc
Q 023482          129 INDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       129 ~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~  204 (281)
                      +++.+++.+.. .++.+|||+|||+|.++..+++.  +.+++|+|+++.+++.|+++....+ +++++++|+.+ ++.+.
T Consensus        17 ~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~   95 (215)
T 4dzr_A           17 LVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIER   95 (215)
T ss_dssp             HHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHH
T ss_pred             HHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhh
Confidence            45566666654 57789999999999999999998  5599999999999999999887655 78899999887 32210


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                          .   ...+.||+|++|+||...
T Consensus        96 ----~---~~~~~fD~i~~npp~~~~  114 (215)
T 4dzr_A           96 ----A---ERGRPWHAIVSNPPYIPT  114 (215)
T ss_dssp             ----H---HTTCCBSEEEECCCCCC-
T ss_pred             ----h---hccCcccEEEECCCCCCC
Confidence                0   123789999999999653

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.42  E-value=5e-13  Score=109.64  Aligned_cols=114  Identities=15%  Similarity=0.313  Sum_probs=84.2

Q ss_pred             ccCCHHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~  197 (281)
                      ..+...+.+.++..+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++....   ++++++++|+.
T Consensus        25 rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  104 (187)
T 2fhp_A           25 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN  104 (187)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHH
Confidence            3456677788888874 3467899999999999999988875 59999999999999999988644   37999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcc--cHHHHHHh-----ccCCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQL-----LPMGDIF  244 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~--~~~~~~~l-----l~~~~~~  244 (281)
                      +....     +.   ...+.||+|++|+||..  ....+..+     ++++|.+
T Consensus       105 ~~~~~-----~~---~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l  150 (187)
T 2fhp_A          105 RALEQ-----FY---EEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVI  150 (187)
T ss_dssp             HHHHH-----HH---HTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHH-----HH---hcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEE
Confidence            74210     00   12468999999999753  23444443     4555543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.41  E-value=9.1e-13  Score=121.23  Aligned_cols=104  Identities=25%  Similarity=0.375  Sum_probs=81.8

Q ss_pred             HHHHHHHHhc--CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccch
Q 023482          129 INDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       129 ~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~  205 (281)
                      +.+.+.+.+.  ..++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.|+++...++ +++++++|+.+.+..   
T Consensus       219 ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~---  295 (381)
T 3dmg_A          219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTE---  295 (381)
T ss_dssp             HHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCT---
T ss_pred             HHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcccc---
Confidence            3444444432  3367799999999999999999998999999999999999999988665 799999999987532   


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCcc-----cH---HH---HHHhccCCCCc
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNI-----ST---DV---IKQLLPMGDIF  244 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~-----~~---~~---~~~ll~~~~~~  244 (281)
                               .+.||+|++|+||+.     ..   .+   +.++++++|.+
T Consensus       296 ---------~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l  336 (381)
T 3dmg_A          296 ---------EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVF  336 (381)
T ss_dssp             ---------TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEE
T ss_pred             ---------CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEE
Confidence                     368999999999986     21   22   24667777655

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=8.6e-13  Score=114.77  Aligned_cols=110  Identities=15%  Similarity=0.214  Sum_probs=87.9

Q ss_pred             ccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccc
Q 023482          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (281)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~  200 (281)
                      ......+.+.+.+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++.    +++++++|+.+++
T Consensus        14 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~d~~~~~   89 (261)
T 3ege_A           14 QTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP----QVEWFTGYAENLA   89 (261)
T ss_dssp             CSBCCCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT----TEEEECCCTTSCC
T ss_pred             hcccccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc----CCEEEECchhhCC
Confidence            334456788999999998888899999999999999999998899999999999998876543    8999999999987


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~  247 (281)
                      +++            +.||+|+++..++...      ..+.++++ ||.+...
T Consensus        90 ~~~------------~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~  129 (261)
T 3ege_A           90 LPD------------KSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLL  129 (261)
T ss_dssp             SCT------------TCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEE
T ss_pred             CCC------------CCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEE
Confidence            543            6799999987654322      23347788 8865333

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.41  E-value=7.2e-13  Score=111.86  Aligned_cols=107  Identities=14%  Similarity=0.226  Sum_probs=82.1

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC-------CeEEEEcCc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-------QLKVLQEDF  196 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~-------~v~~~~gD~  196 (281)
                      .+...+.+.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.+++.|++++...+       +++++++|+
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (219)
T 3jwg_A           14 NQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL   93 (219)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS
T ss_pred             hHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc
Confidence            34456666677766678899999999999999999875  699999999999999999876442       899999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccH-----HH---HHHhccCCCCc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-----DV---IKQLLPMGDIF  244 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-----~~---~~~ll~~~~~~  244 (281)
                      ...+..            .+.||+|+++..++...     .+   +.+++++++.+
T Consensus        94 ~~~~~~------------~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~  137 (219)
T 3jwg_A           94 VYRDKR------------FSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVI  137 (219)
T ss_dssp             SSCCGG------------GTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEE
T ss_pred             cccccc------------cCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEE
Confidence            776643            26799999876554332     22   34667777643

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.41  E-value=8.9e-13  Score=116.62  Aligned_cols=88  Identities=18%  Similarity=0.278  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d  203 (281)
                      .+++.+++.+...++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++...++   +++++++|+.+.. . 
T Consensus       110 ~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~-~-  187 (284)
T 1nv8_A          110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-K-  187 (284)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-G-
T ss_pred             HHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-c-
Confidence            45566666665446679999999999999999998 7799999999999999999987653   5999999998731 1 


Q ss_pred             chhhHHHhhcCCCCc---cEEEEcCCCcc
Q 023482          204 HMLSLFERRKSSSGF---AKVVANIPFNI  229 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~---d~Vi~n~P~~~  229 (281)
                                  +.|   |+|++||||..
T Consensus       188 ------------~~f~~~D~IvsnPPyi~  204 (284)
T 1nv8_A          188 ------------EKFASIEMILSNPPYVK  204 (284)
T ss_dssp             ------------GGTTTCCEEEECCCCBC
T ss_pred             ------------cccCCCCEEEEcCCCCC
Confidence                        357   99999999964

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.40  E-value=3.2e-12  Score=113.46  Aligned_cols=107  Identities=14%  Similarity=0.164  Sum_probs=87.6

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~  204 (281)
                      ....+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+   +++++++|+.+++    
T Consensus        60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----  135 (302)
T 3hem_A           60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFD----  135 (302)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCC----
T ss_pred             HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcC----
Confidence            4566778888888999999999999999999998 8999999999999999999987543   8999999998751    


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCccc------------H---HHHHHhccCCCCcceEEEe
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNIS------------T---DVIKQLLPMGDIFSEVVLL  250 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~------------~---~~~~~ll~~~~~~~~~~~~  250 (281)
                                 +.||+|+++..++..            .   ..+.++++++|.+......
T Consensus       136 -----------~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          136 -----------EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             -----------CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             -----------CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence                       689999998666444            2   3345888999987555443

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.40  E-value=1e-12  Score=112.72  Aligned_cols=110  Identities=13%  Similarity=0.155  Sum_probs=88.4

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcccccccc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d  203 (281)
                      ++.....+++.+.+.++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++....  .+++++++|+.++++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A            6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred             cCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence            3456677888889999999999999999999999998889999999999999999887543  48999999999887543


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~  247 (281)
                                  +.||+|+++..+++..      ..+.++++++|.+...
T Consensus        86 ------------~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  123 (239)
T 1xxl_A           86 ------------DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV  123 (239)
T ss_dssp             ------------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------------CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence                        6799999985543322      3335778888876443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.40  E-value=3.4e-12  Score=108.65  Aligned_cols=103  Identities=16%  Similarity=0.041  Sum_probs=79.8

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcc-ccccccchh
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFV-KCHIRSHML  206 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~-~~~~~d~~~  206 (281)
                      .+...++.... .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++.   .+++++++|+. .+|+.    
T Consensus        36 ~l~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~~~----  107 (226)
T 3m33_A           36 LTFDLWLSRLL-TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANA---PHADVYEWNGKGELPAG----  107 (226)
T ss_dssp             HHHHHHHHHHC-CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHC---TTSEEEECCSCSSCCTT----
T ss_pred             HHHHHHHHhcC-CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhC---CCceEEEcchhhccCCc----
Confidence            34444444332 46789999999999999999999899999999999999999983   48999999994 55542    


Q ss_pred             hHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcc
Q 023482          207 SLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~  245 (281)
                             ..+.||+|+++......-..+.++++++|.+.
T Consensus       108 -------~~~~fD~v~~~~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          108 -------LGAPFGLIVSRRGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             -------CCCCEEEEEEESCCSGGGGGHHHHEEEEEEEE
T ss_pred             -------CCCCEEEEEeCCCHHHHHHHHHHHcCCCcEEE
Confidence                   13689999998655555556677888877664

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.40  E-value=2.3e-12  Score=112.33  Aligned_cols=110  Identities=20%  Similarity=0.253  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (281)
                      ..+.+.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.|+++....   ++++++.+|+.+++++
T Consensus        47 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  126 (273)
T 3bus_A           47 DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE  126 (273)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence            345677888888888999999999999999999986 789999999999999999887643   3799999999998754


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceEE
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~~  248 (281)
                      +            +.||+|+++..+++..      ..+.++++++|.+....
T Consensus       127 ~------------~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          127 D------------ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             T------------TCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             C------------CCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            3            6799999986664432      23347778887764443

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.40  E-value=6.4e-13  Score=122.23  Aligned_cols=110  Identities=12%  Similarity=0.123  Sum_probs=86.2

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcC-----------CCCeEE
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFAS-----------IDQLKV  191 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~-----------~~~v~~  191 (281)
                      +.+..+..+++.+.+.++++|||||||+|.+++.++.. ++ +|+|||+++.+++.|+++...           .++|+|
T Consensus       157 t~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef  236 (438)
T 3uwp_A          157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  236 (438)
T ss_dssp             THHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence            44678889999999999999999999999999999875 55 699999999999999875421           258999


Q ss_pred             EEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccH-----HHHHHhccCCCCc
Q 023482          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-----DVIKQLLPMGDIF  244 (281)
Q Consensus       192 ~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-----~~~~~ll~~~~~~  244 (281)
                      ++||+.++++.+.    +      +.+|+|++|.++....     ..+.+.+++|+.+
T Consensus       237 i~GD~~~lp~~d~----~------~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrI  284 (438)
T 3uwp_A          237 ERGDFLSEEWRER----I------ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRI  284 (438)
T ss_dssp             EECCTTSHHHHHH----H------HTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEE
T ss_pred             EECcccCCccccc----c------CCccEEEEcccccCchHHHHHHHHHHcCCCCcEE
Confidence            9999999876421    1      3589999998875432     1123667787765

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.39  E-value=1e-12  Score=109.12  Aligned_cols=100  Identities=17%  Similarity=0.283  Sum_probs=77.9

Q ss_pred             HhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHH
Q 023482          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      ...+.++.+|||+|||+|.++..+++.   ..+|+|+|+++.+++.|+++....   ++++++++|+.+++.        
T Consensus        17 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------   88 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK--------   88 (197)
T ss_dssp             HHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG--------
T ss_pred             HhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh--------
Confidence            345567889999999999999999987   259999999999999999998764   389999999988752        


Q ss_pred             HhhcCCCCccEEEEcCCCcc---------------cHHHHHHhccCCCCcce
Q 023482          210 ERRKSSSGFAKVVANIPFNI---------------STDVIKQLLPMGDIFSE  246 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~---------------~~~~~~~ll~~~~~~~~  246 (281)
                         ...+.||+|++|+||..               .-..+.++++++|.+..
T Consensus        89 ---~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~  137 (197)
T 3eey_A           89 ---YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITV  137 (197)
T ss_dssp             ---TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEE
Confidence               12368999999998711               12333477788776643

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.39  E-value=1.4e-12  Score=109.22  Aligned_cols=107  Identities=19%  Similarity=0.277  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (281)
                      +.+...+++.+...++ +|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++....   ++++++++|+.+++++
T Consensus        30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence            4567778888877666 9999999999999999997 679999999999999999997654   3899999999998754


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCccc---H---HHHHHhccCCCCcce
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFNIS---T---DVIKQLLPMGDIFSE  246 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~~---~---~~~~~ll~~~~~~~~  246 (281)
                      +            +.||+|+++..++..   .   ..+.++++++|.+..
T Consensus       109 ~------------~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~  146 (219)
T 3dlc_A          109 D------------NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYI  146 (219)
T ss_dssp             T------------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             c------------ccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEE
Confidence            3            689999998765443   2   233467777776543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.39  E-value=1e-12  Score=120.70  Aligned_cols=104  Identities=14%  Similarity=0.185  Sum_probs=81.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-----CeEEEEcCcccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHI  201 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-----~v~~~~gD~~~~~~  201 (281)
                      ....+++.+...++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|+++...++     +++++.+|+.+.  
T Consensus       210 ~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~--  287 (375)
T 4dcm_A          210 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--  287 (375)
T ss_dssp             HHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT--
T ss_pred             HHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc--
Confidence            4556778887777789999999999999999998  5799999999999999999987543     688999999873  


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcCCCcccH-----------HHHHHhccCCCCcc
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANIPFNIST-----------DVIKQLLPMGDIFS  245 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-----------~~~~~ll~~~~~~~  245 (281)
                                 ...+.||+|++||||+...           ..+.++++++|.+.
T Consensus       288 -----------~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~  331 (375)
T 4dcm_A          288 -----------VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELY  331 (375)
T ss_dssp             -----------CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEE
T ss_pred             -----------CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEE
Confidence                       2236899999999997421           23346677777653

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.38  E-value=2.4e-12  Score=111.28  Aligned_cols=109  Identities=23%  Similarity=0.344  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHh-----cCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-CCCeEEEEcCccccc
Q 023482          127 SEINDQLAAAA-----AVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCH  200 (281)
Q Consensus       127 ~~~~~~l~~~l-----~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~~~v~~~~gD~~~~~  200 (281)
                      ......+++.+     .+.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++... ..+++++++|+.+++
T Consensus        20 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~   99 (263)
T 2yqz_A           20 PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP   99 (263)
T ss_dssp             HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC
T ss_pred             hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC
Confidence            34445555544     456788999999999999999999888999999999999999998732 248999999999887


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~  247 (281)
                      +.+            +.||+|+++..+++..      ..+.++++++|.+...
T Consensus       100 ~~~------------~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          100 LPD------------ESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             SCT------------TCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCC------------CCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            533            6799999987765542      2234778888876443

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.38  E-value=2e-12  Score=109.03  Aligned_cols=103  Identities=28%  Similarity=0.406  Sum_probs=82.7

Q ss_pred             HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHH
Q 023482          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      ..+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++..  .+++++++|+.++++         
T Consensus        35 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~d~~~~~~---------  103 (220)
T 3hnr_A           35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP--KEFSITEGDFLSFEV---------  103 (220)
T ss_dssp             HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC--TTCCEESCCSSSCCC---------
T ss_pred             HHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC--CceEEEeCChhhcCC---------
Confidence            345555555578899999999999999999998999999999999999999876  589999999999864         


Q ss_pred             hhcCCCCccEEEEcCCCcccH--------HHHHHhccCCCCcceEE
Q 023482          211 RRKSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~~~~~  248 (281)
                         . +.||+|+++..++...        ..+.++++++|.+....
T Consensus       104 ---~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          104 ---P-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             ---C-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ---C-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence               2 6899999986664422        23347888888775443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.38  E-value=3.6e-12  Score=110.96  Aligned_cols=112  Identities=13%  Similarity=0.136  Sum_probs=87.4

Q ss_pred             CCHHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcccc
Q 023482          125 LNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (281)
Q Consensus       125 ~~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~  199 (281)
                      ........++..+. +.++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.|+++....   ++++++++|+.++
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  108 (267)
T 3kkz_A           29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL  108 (267)
T ss_dssp             CCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             CCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC
Confidence            34566667777766 6678899999999999999999984 49999999999999999988654   3699999999998


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCcccH-----HHHHHhccCCCCcceEE
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIST-----DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-----~~~~~ll~~~~~~~~~~  248 (281)
                      +++            .+.||+|+++..++...     ..+.++++++|.+....
T Consensus       109 ~~~------------~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          109 PFR------------NEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             CCC------------TTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCC------------CCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEE
Confidence            753            36899999987665432     22346778887764443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.38  E-value=1.9e-12  Score=109.80  Aligned_cols=110  Identities=14%  Similarity=0.210  Sum_probs=90.4

Q ss_pred             ccCCHHHHHHHHHHhc--CCCCCEEEEEcCCccHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHhcC-------CCCeE
Q 023482          123 YMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-------IDQLK  190 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~-------~~~v~  190 (281)
                      .+..+.....+++.+.  +.++.+|||+|||+|..+..+++. +  .+|+++|+++.+++.++++...       .++++
T Consensus        57 ~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~  136 (226)
T 1i1n_A           57 TISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQ  136 (226)
T ss_dssp             EECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEE
T ss_pred             eecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEE
Confidence            5667788888888886  678889999999999999999986 3  6999999999999999988764       34899


Q ss_pred             EEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       191 ~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ++++|+.+.+..            .+.||+|+.+.++......+.++++++|.+
T Consensus       137 ~~~~d~~~~~~~------------~~~fD~i~~~~~~~~~~~~~~~~LkpgG~l  178 (226)
T 1i1n_A          137 LVVGDGRMGYAE------------EAPYDAIHVGAAAPVVPQALIDQLKPGGRL  178 (226)
T ss_dssp             EEESCGGGCCGG------------GCCEEEEEECSBBSSCCHHHHHTEEEEEEE
T ss_pred             EEECCcccCccc------------CCCcCEEEECCchHHHHHHHHHhcCCCcEE
Confidence            999999865422            267999999988766666677888888765

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.38  E-value=2.7e-12  Score=109.31  Aligned_cols=106  Identities=21%  Similarity=0.340  Sum_probs=83.8

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchh
Q 023482          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       130 ~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~  206 (281)
                      ...++..+. ..++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.|+++....++++++++|+.++++.    
T Consensus        32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----  107 (234)
T 3dtn_A           32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE----  107 (234)
T ss_dssp             HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC----
T ss_pred             HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC----
Confidence            345555554 446789999999999999999998  7799999999999999999988777999999999998742    


Q ss_pred             hHHHhhcCCCCccEEEEcCCCcccH--------HHHHHhccCCCCcceEE
Q 023482          207 SLFERRKSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~~~~~  248 (281)
                               +.||+|+++..++...        ..+.++++++|.+....
T Consensus       108 ---------~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          108 ---------EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             ---------SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                     6799999987665433        22347778887764433

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.38  E-value=2.6e-12  Score=108.33  Aligned_cols=96  Identities=15%  Similarity=0.225  Sum_probs=75.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++.+|||||||+|.++..++..  +.+|+|+|+++.+++.|+++....  .+++++++|+.+++-.          ...+
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~----------~~~~  110 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY----------FEDG  110 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT----------SCTT
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh----------cCCC
Confidence            5779999999999999999987  579999999999999999987643  4899999999886510          1236


Q ss_pred             CccEEEEcCCCcc--------------cHHHHHHhccCCCCcce
Q 023482          217 GFAKVVANIPFNI--------------STDVIKQLLPMGDIFSE  246 (281)
Q Consensus       217 ~~d~Vi~n~P~~~--------------~~~~~~~ll~~~~~~~~  246 (281)
                      .||.|++|+|..+              .-..+.++++++|.+..
T Consensus       111 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  154 (214)
T 1yzh_A          111 EIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  154 (214)
T ss_dssp             CCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             CCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEE
Confidence            7999999987532              22334577888887643

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.38  E-value=2.5e-12  Score=110.91  Aligned_cols=112  Identities=12%  Similarity=0.136  Sum_probs=86.6

Q ss_pred             CCHHHHHHHHHHh-cCCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccc
Q 023482          125 LNSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (281)
Q Consensus       125 ~~~~~~~~l~~~l-~~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~  199 (281)
                      ..+.....++..+ .+.++.+|||||||+|..+..+++.+ .+|+|+|+++.+++.|+++....+   +++++++|+.++
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  108 (257)
T 3f4k_A           29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL  108 (257)
T ss_dssp             CCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             CCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence            3456666677766 45677899999999999999999985 499999999999999999887543   599999999988


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCccc--H---HHHHHhccCCCCcceEE
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS--T---DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~--~---~~~~~ll~~~~~~~~~~  248 (281)
                      ++.+            +.||+|+++..++..  .   ..+.++++++|.+....
T Consensus       109 ~~~~------------~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          109 PFQN------------EELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             SSCT------------TCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCCC------------CCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence            7543            689999998665442  2   23346778887764443

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.38  E-value=1.1e-12  Score=112.24  Aligned_cols=105  Identities=20%  Similarity=0.246  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCcccc--ccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC--HIR  202 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~--~~~  202 (281)
                      ..+...+...+ ..++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+ +++++++|+.++  ++.
T Consensus        47 ~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~  125 (236)
T 1zx0_A           47 TPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP  125 (236)
T ss_dssp             HHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC
T ss_pred             HHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccC
Confidence            34445555444 45678999999999999999987654 99999999999999999887554 899999999987  543


Q ss_pred             cchhhHHHhhcCCCCccEEEE-cCCCc----c-c-----HHHHHHhccCCCCc
Q 023482          203 SHMLSLFERRKSSSGFAKVVA-NIPFN----I-S-----TDVIKQLLPMGDIF  244 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~-n~P~~----~-~-----~~~~~~ll~~~~~~  244 (281)
                                  .++||+|++ ..+..    . .     -..+.++++++|.+
T Consensus       126 ------------~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l  166 (236)
T 1zx0_A          126 ------------DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL  166 (236)
T ss_dssp             ------------TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred             ------------CCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEE
Confidence                        367999998 22211    1 1     23356888888865

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.38  E-value=3.6e-12  Score=104.46  Aligned_cols=109  Identities=16%  Similarity=0.208  Sum_probs=89.2

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~  200 (281)
                      .+...+...+++.+...++.+|||+|||+|.++..++..+.+|+++|+++.+++.++++....   .+++++++|+.+ +
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~   94 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-A   94 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-H
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-h
Confidence            667888889999999889999999999999999999998889999999999999999987644   489999999876 2


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcccHHHHH---HhccCCCCc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~---~ll~~~~~~  244 (281)
                      +           ...+.||+|+++.+++....++.   ++++++|.+
T Consensus        95 ~-----------~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l  130 (192)
T 1l3i_A           95 L-----------CKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRI  130 (192)
T ss_dssp             H-----------TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEE
T ss_pred             c-----------ccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEE
Confidence            2           11257999999988765555554   566676655

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.37  E-value=1.4e-12  Score=114.92  Aligned_cols=105  Identities=16%  Similarity=0.149  Sum_probs=83.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d  203 (281)
                      .....+...+  .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++...++   +++++++|+.+++.  
T Consensus       114 ~~~~~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--  189 (278)
T 2frn_A          114 KERVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--  189 (278)
T ss_dssp             HHHHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--
T ss_pred             HHHHHHHHhC--CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--
Confidence            4455555554  3688999999999999999999876 69999999999999999987543   59999999998753  


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCcc--cHHHHHHhccCCCCcceE
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMGDIFSEV  247 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~--~~~~~~~ll~~~~~~~~~  247 (281)
                                 ...||+|++|+|+..  .-....+++++||.+-..
T Consensus       190 -----------~~~fD~Vi~~~p~~~~~~l~~~~~~LkpgG~l~~~  224 (278)
T 2frn_A          190 -----------ENIADRILMGYVVRTHEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             -----------CSCEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             -----------cCCccEEEECCchhHHHHHHHHHHHCCCCeEEEEE
Confidence                       368999999999764  334456788888776433

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.37  E-value=2.6e-12  Score=113.76  Aligned_cols=103  Identities=18%  Similarity=0.199  Sum_probs=78.8

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHH-HHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLT-NVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t-~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~  204 (281)
                      +++.....+.+.++++|||||||+|.++ ..+++. +++|+|||+|+++++.|+++++..  ++++++++|+.+++  + 
T Consensus       110 l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d-  186 (298)
T 3fpf_A          110 LLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--G-  186 (298)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--G-
T ss_pred             HHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--C-
Confidence            4444456778889999999999998766 445553 889999999999999999987643  58999999998864  2 


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCC---cccHHHHHHhccCCCCcc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPF---NISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~---~~~~~~~~~ll~~~~~~~  245 (281)
                                 +.||+|+.+.--   ......+.+.+++||.+.
T Consensus       187 -----------~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lv  219 (298)
T 3fpf_A          187 -----------LEFDVLMVAALAEPKRRVFRNIHRYVDTETRII  219 (298)
T ss_dssp             -----------CCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEE
T ss_pred             -----------CCcCEEEECCCccCHHHHHHHHHHHcCCCcEEE
Confidence                       678999875332   223345568888888764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.37  E-value=3.2e-12  Score=114.07  Aligned_cols=107  Identities=10%  Similarity=0.139  Sum_probs=84.7

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccc
Q 023482          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       130 ~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~  204 (281)
                      .+.+++.+. +.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++....+   +++++++|+.++++.+ 
T Consensus       105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-  183 (312)
T 3vc1_A          105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK-  183 (312)
T ss_dssp             HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT-
T ss_pred             HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC-
Confidence            344666666 778889999999999999999998 8899999999999999999887553   7999999999987543 


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCccc--H---HHHHHhccCCCCcceEE
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNIS--T---DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~--~---~~~~~ll~~~~~~~~~~  248 (281)
                                 +.||+|+++..++..  .   ..+.+++++||.+....
T Consensus       184 -----------~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          184 -----------GAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             -----------TCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----------CCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEE
Confidence                       689999997554332  1   33357888888765444

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.36  E-value=2.1e-12  Score=107.93  Aligned_cols=93  Identities=23%  Similarity=0.247  Sum_probs=75.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCC
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +.++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++....+  +++++++|+.+..              .
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------------~  123 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--------------D  123 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--------------C
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--------------C
Confidence            45778999999999999999998855 99999999999999999987543  5999999997742              2


Q ss_pred             CCccEEEEcCCCcccHHHHH---HhccCCCCcc
Q 023482          216 SGFAKVVANIPFNISTDVIK---QLLPMGDIFS  245 (281)
Q Consensus       216 ~~~d~Vi~n~P~~~~~~~~~---~ll~~~~~~~  245 (281)
                      +.||+|+++++++....++.   ++++++|.+.
T Consensus       124 ~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~  156 (205)
T 3grz_A          124 GKFDLIVANILAEILLDLIPQLDSHLNEDGQVI  156 (205)
T ss_dssp             SCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEE
T ss_pred             CCceEEEECCcHHHHHHHHHHHHHhcCCCCEEE
Confidence            67999999999876554444   5556666553

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.36  E-value=2.7e-12  Score=110.64  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=81.7

Q ss_pred             HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHH
Q 023482          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      ..+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++.. ..+++++++|+.++++.       
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~-------  105 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-SPVVCYEQKAIEDIAIE-------  105 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-CTTEEEEECCGGGCCCC-------
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-cCCeEEEEcchhhCCCC-------
Confidence            3445555656788999999999999999999977 99999999999999999876 45899999999988753       


Q ss_pred             HhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcce
Q 023482          210 ERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSE  246 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~  246 (281)
                           .+.||+|+++..++...      ..+.++++++|.+..
T Consensus       106 -----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  143 (253)
T 3g5l_A          106 -----PDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIF  143 (253)
T ss_dssp             -----TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----CCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEE
Confidence                 36899999987654432      233577788876533

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.36  E-value=5e-12  Score=111.63  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHh----cCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccc
Q 023482          127 SEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (281)
Q Consensus       127 ~~~~~~l~~~l----~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~  198 (281)
                      ......++..+    .+.++.+|||||||+|..+..+++. +.+|+|+|+++.+++.|+++....   ++++++++|+.+
T Consensus        64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  143 (297)
T 2o57_A           64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE  143 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence            45567788888    7778899999999999999999987 889999999999999999887533   379999999999


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCccc------HHHHHHhccCCCCcceEEE
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIS------TDVIKQLLPMGDIFSEVVL  249 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~------~~~~~~ll~~~~~~~~~~~  249 (281)
                      +|+++            +.||+|+++..++..      -..+.++++++|.+.....
T Consensus       144 ~~~~~------------~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          144 IPCED------------NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             CSSCT------------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCC------------CCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            88643            679999987554332      2334578888887754443

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.36  E-value=2.4e-12  Score=112.38  Aligned_cols=107  Identities=19%  Similarity=0.182  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchh
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~  206 (281)
                      +..++.+++.+.+.++.+|||||||+|.++..+++.+++|+|+|+|+.|++.|+++....    ++.+|+.+++.... .
T Consensus        31 ~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~-~  105 (261)
T 3iv6_A           31 PSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIP-K  105 (261)
T ss_dssp             CCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCC-G
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc----cceeeeeecccccc-c
Confidence            456778888888889999999999999999999999999999999999999999998753    34555555443000 0


Q ss_pred             hHHHhhcCCCCccEEEEcCCCcc-cHH----H---HHHhccCCCCcc
Q 023482          207 SLFERRKSSSGFAKVVANIPFNI-STD----V---IKQLLPMGDIFS  245 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~-~~~----~---~~~ll~~~~~~~  245 (281)
                            ...+.||+|+++..++. ..+    .   +.+++ +||.+.
T Consensus       106 ------~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~  145 (261)
T 3iv6_A          106 ------ELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVR  145 (261)
T ss_dssp             ------GGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEE
T ss_pred             ------ccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEE
Confidence                  11368999999876643 221    2   23566 777764

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.36  E-value=3.6e-12  Score=107.67  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=79.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhH
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      .+.+.+.+.  ++.+|||+|||+|.++..++..+.+++|+|+++.+++.|+++.... .+++++++|+.++++.      
T Consensus        29 ~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~------  100 (227)
T 1ve3_A           29 EPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFE------  100 (227)
T ss_dssp             HHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSC------
T ss_pred             HHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCC------
Confidence            344444443  4779999999999999999998889999999999999999987654 4899999999987643      


Q ss_pred             HHhhcCCCCccEEEEcCC--CcccH------HHHHHhccCCCCcce
Q 023482          209 FERRKSSSGFAKVVANIP--FNIST------DVIKQLLPMGDIFSE  246 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P--~~~~~------~~~~~ll~~~~~~~~  246 (281)
                            .+.||+|+++.+  +....      ..+.++++++|.+..
T Consensus       101 ------~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  140 (227)
T 1ve3_A          101 ------DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIM  140 (227)
T ss_dssp             ------TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ------CCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                  367999999988  54432      223467777776633

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.36  E-value=3.6e-12  Score=105.38  Aligned_cols=102  Identities=16%  Similarity=0.145  Sum_probs=80.3

Q ss_pred             HHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHH
Q 023482          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      .+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++....  .+++++++|+.++++        
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------   94 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF--------   94 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC--------
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC--------
Confidence            4455566667789999999999999999999889999999999999999887543  379999999998764        


Q ss_pred             HhhcCCCCccEEEEcCCCcccH--------HHHHHhccCCCCcce
Q 023482          210 ERRKSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIFSE  246 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~~~  246 (281)
                           .+.||+|+++..++...        ..+.++++++|.+-.
T Consensus        95 -----~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~  134 (199)
T 2xvm_A           95 -----DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  134 (199)
T ss_dssp             -----CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             -----CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence                 26799999987665332        223467777776533

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.36  E-value=4.1e-12  Score=109.76  Aligned_cols=107  Identities=21%  Similarity=0.340  Sum_probs=87.8

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccc
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~  198 (281)
                      ..+.....++..+.+.++.+|||+|||+|.++..++..   +.+|+++|+++.+++.|++++...+   +++++++|+.+
T Consensus        77 ~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  156 (255)
T 3mb5_A           77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE  156 (255)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred             ccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence            34566678888899889999999999999999999998   6799999999999999999986432   49999999986


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcc-cHHHHHHhccCCCCc
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLPMGDIF  244 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-~~~~~~~ll~~~~~~  244 (281)
                      . +            ....||+|++|+|..+ .-..+.++++++|.+
T Consensus       157 ~-~------------~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l  190 (255)
T 3mb5_A          157 G-I------------EEENVDHVILDLPQPERVVEHAAKALKPGGFF  190 (255)
T ss_dssp             C-C------------CCCSEEEEEECSSCGGGGHHHHHHHEEEEEEE
T ss_pred             c-c------------CCCCcCEEEECCCCHHHHHHHHHHHcCCCCEE
Confidence            4 2            2357999999988653 445566788887765

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.36  E-value=2.4e-12  Score=107.25  Aligned_cols=90  Identities=18%  Similarity=0.280  Sum_probs=72.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEE
Q 023482          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~V  221 (281)
                      +.+|||+|||+|.++..++..+.+|+|+|+++.+++.|+++..   +++++++|+.++++.            .+.||+|
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~d~~~~~~~------------~~~fD~v  106 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHP---SVTFHHGTITDLSDS------------PKRWAGL  106 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCT---TSEEECCCGGGGGGS------------CCCEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCC---CCeEEeCcccccccC------------CCCeEEE
Confidence            6799999999999999999998899999999999999998854   899999999998753            3789999


Q ss_pred             EEcCCCccc-----HHH---HHHhccCCCCcce
Q 023482          222 VANIPFNIS-----TDV---IKQLLPMGDIFSE  246 (281)
Q Consensus       222 i~n~P~~~~-----~~~---~~~ll~~~~~~~~  246 (281)
                      +++..++..     ..+   +.++++++|.+..
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i  139 (203)
T 3h2b_A          107 LAWYSLIHMGPGELPDALVALRMAVEDGGGLLM  139 (203)
T ss_dssp             EEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEE
T ss_pred             EehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            997544332     222   3467777776543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.36  E-value=3.3e-12  Score=112.51  Aligned_cols=110  Identities=15%  Similarity=0.226  Sum_probs=87.3

Q ss_pred             ccCCHHHHHHHHHHh-cCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l-~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~  197 (281)
                      ++..+.+...+++.+ ...++.+|||||||+|.++..+++.   +.+|+|+|+++.+++.|+++....+ +++++++|+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~   82 (284)
T 3gu3_A            3 LYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT   82 (284)
T ss_dssp             TTCCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT
T ss_pred             cccchHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh
Confidence            344567777777766 5567889999999999999999987   5799999999999999999987665 8999999999


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFS  245 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~  245 (281)
                      ++++.             ++||+|+++..++...      ..+.++++++|.+.
T Consensus        83 ~~~~~-------------~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  123 (284)
T 3gu3_A           83 EIELN-------------DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII  123 (284)
T ss_dssp             TCCCS-------------SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEE
T ss_pred             hcCcC-------------CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEE
Confidence            87642             5799999986654332      23346778887764

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.36  E-value=8.7e-13  Score=111.15  Aligned_cols=104  Identities=18%  Similarity=0.276  Sum_probs=83.2

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccc
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~  204 (281)
                      ...+++.+.+.++.+|||+|||+|.++..+++.+   .+|+|+|+++.+++.|+++....  .+++++++|+.++++.+ 
T Consensus        26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-  104 (219)
T 3dh0_A           26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD-  104 (219)
T ss_dssp             HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS-
T ss_pred             HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC-
Confidence            3567777788888999999999999999999875   69999999999999999987643  38999999999887543 


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCccc---H---HHHHHhccCCCCcc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNIS---T---DVIKQLLPMGDIFS  245 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~---~---~~~~~ll~~~~~~~  245 (281)
                                 +.||+|+++..++..   .   ..+.++++++|.+.
T Consensus       105 -----------~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  140 (219)
T 3dh0_A          105 -----------NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLA  140 (219)
T ss_dssp             -----------SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEE
T ss_pred             -----------CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEE
Confidence                       679999998665433   2   23347777777653

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.36  E-value=1.9e-12  Score=113.74  Aligned_cols=112  Identities=16%  Similarity=0.162  Sum_probs=84.5

Q ss_pred             ccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCc
Q 023482          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (281)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~  196 (281)
                      ..|+.++...+.+.....+.++++|||+|||+|.++..++..+  .+|+|+|+++.+++.|+++...++  +++++++|+
T Consensus        99 ~~f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~  178 (272)
T 3a27_A           99 KIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADN  178 (272)
T ss_dssp             TSCCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCG
T ss_pred             hEEECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECCh
Confidence            3344444444444444456678899999999999999999984  499999999999999999987654  899999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccH--HHHHHhccCCCCcc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST--DVIKQLLPMGDIFS  245 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~--~~~~~ll~~~~~~~  245 (281)
                      .+.+.             .+.||+|+.|+|+....  ....+++++++.+-
T Consensus       179 ~~~~~-------------~~~~D~Vi~d~p~~~~~~l~~~~~~LkpgG~l~  216 (272)
T 3a27_A          179 RDVEL-------------KDVADRVIMGYVHKTHKFLDKTFEFLKDRGVIH  216 (272)
T ss_dssp             GGCCC-------------TTCEEEEEECCCSSGGGGHHHHHHHEEEEEEEE
T ss_pred             HHcCc-------------cCCceEEEECCcccHHHHHHHHHHHcCCCCEEE
Confidence            88731             25799999999974322  33346677777664

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.35  E-value=3.3e-12  Score=110.44  Aligned_cols=82  Identities=18%  Similarity=0.218  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccc---ccccchhhHHHhh
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC---HIRSHMLSLFERR  212 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~---~~~d~~~d~v~~~  212 (281)
                      ++.+|||+|||+|.++..++..  +.+|+|+|+++.+++.|+++...++   +++++++|+.+.   ++.+         
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---------  135 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE---------  135 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT---------
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhc---------
Confidence            4679999999999999999876  6899999999999999999987543   599999998762   2210         


Q ss_pred             cCCCCccEEEEcCCCcccH
Q 023482          213 KSSSGFAKVVANIPFNIST  231 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~~  231 (281)
                      .....||+|++||||....
T Consensus       136 ~~~~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          136 ESEIIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             CCSCCBSEEEECCCCC---
T ss_pred             ccCCcccEEEECCCCccCc
Confidence            0025799999999997543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.35  E-value=9.4e-12  Score=105.32  Aligned_cols=113  Identities=15%  Similarity=0.179  Sum_probs=83.5

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccc
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~  198 (281)
                      ..+.....+...+...++.+|||||||+|..+..+++.   +++|+++|+++.+++.|++++...+   +++++++|+.+
T Consensus        42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  121 (223)
T 3duw_A           42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD  121 (223)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34555555555545567889999999999999999997   6799999999999999999987543   69999999976


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcccHHHH---HHhccCCCCc
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIF  244 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~---~~ll~~~~~~  244 (281)
                      ....     +..  ...+.||+|+.+.+......++   .+++++||.+
T Consensus       122 ~~~~-----~~~--~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~l  163 (223)
T 3duw_A          122 SLQQ-----IEN--EKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVI  163 (223)
T ss_dssp             HHHH-----HHH--TTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEE
T ss_pred             HHHH-----HHh--cCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEE
Confidence            4210     000  1125699999998765555444   4778888854

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.35  E-value=6.5e-12  Score=108.39  Aligned_cols=109  Identities=15%  Similarity=0.185  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccc
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK  198 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~  198 (281)
                      ..+.....++..+.+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|++++...   ++++++++|+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~  159 (258)
T 2pwy_A           80 TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE  159 (258)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG
T ss_pred             ccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh
Confidence            34556678888888889999999999999999999987   579999999999999999987543   589999999988


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCc-ccHHHHHHhccCCCCcc
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~-~~~~~~~~ll~~~~~~~  245 (281)
                      .++.            .+.||+|++++|-. ..-..+.+++++++.+.
T Consensus       160 ~~~~------------~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~  195 (258)
T 2pwy_A          160 AELE------------EAAYDGVALDLMEPWKVLEKAALALKPDRFLV  195 (258)
T ss_dssp             CCCC------------TTCEEEEEEESSCGGGGHHHHHHHEEEEEEEE
T ss_pred             cCCC------------CCCcCEEEECCcCHHHHHHHHHHhCCCCCEEE
Confidence            7543            25799999998754 33455567777777653

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.34  E-value=5e-12  Score=107.93  Aligned_cols=112  Identities=14%  Similarity=0.177  Sum_probs=88.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~  197 (281)
                      ++..+.....+...+...++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.|++++...+   +++++++|+.
T Consensus        36 ~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  115 (233)
T 2gpy_A           36 PIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDAL  115 (233)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGG
T ss_pred             CCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH
Confidence            5677888888888877778889999999999999999987  6799999999999999999986543   7999999998


Q ss_pred             cc-ccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHH---HhccCCCCc
Q 023482          198 KC-HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (281)
Q Consensus       198 ~~-~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~---~ll~~~~~~  244 (281)
                      +. +..          ...+.||+|+++.+......++.   ++++++|.+
T Consensus       116 ~~~~~~----------~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~l  156 (233)
T 2gpy_A          116 QLGEKL----------ELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLI  156 (233)
T ss_dssp             GSHHHH----------TTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEE
T ss_pred             HHHHhc----------ccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEE
Confidence            74 211          11367999999988755554444   556666654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.34  E-value=1.6e-12  Score=111.74  Aligned_cols=106  Identities=19%  Similarity=0.163  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccch
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~  205 (281)
                      .+.+.+.+.+. .+|.+|||||||+|.++..+++. +.+|++||+|+.+++.|+++....+ +++++.+|+.++...   
T Consensus        48 ~~m~~~a~~~~-~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~---  123 (236)
T 3orh_A           48 PYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT---  123 (236)
T ss_dssp             HHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG---
T ss_pred             HHHHHHHHhhc-cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccc---
Confidence            34444444443 46789999999999999999887 4689999999999999999987665 889999998775321   


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCc------cc-----HHHHHHhccCCCCc
Q 023482          206 LSLFERRKSSSGFAKVVANIPFN------IS-----TDVIKQLLPMGDIF  244 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~------~~-----~~~~~~ll~~~~~~  244 (281)
                             ...+.||.|+.+....      ..     ...+.++|++||.|
T Consensus       124 -------~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l  166 (236)
T 3orh_A          124 -------LPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL  166 (236)
T ss_dssp             -------SCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred             -------ccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEE
Confidence                   2346788888754321      11     13356899999876

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.34  E-value=2.2e-12  Score=116.55  Aligned_cols=114  Identities=18%  Similarity=0.146  Sum_probs=83.8

Q ss_pred             ccCCHHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~  197 (281)
                      |........++.+.+. ..++.+|||+|||+|.++..++..+++|++||+|+.+++.|+++...++    +++++++|+.
T Consensus       134 f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~  213 (332)
T 2igt_A          134 FPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM  213 (332)
T ss_dssp             CGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH
T ss_pred             chHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHH
Confidence            3334445555666654 4467799999999999999999988899999999999999999986443    4999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcc-c------------HHHH---HHhccCCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-S------------TDVI---KQLLPMGDIF  244 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-~------------~~~~---~~ll~~~~~~  244 (281)
                      ++...     ..   .....||+||+|||+.. .            ..++   .+++++++.+
T Consensus       214 ~~l~~-----~~---~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~l  268 (332)
T 2igt_A          214 KFIQR-----EE---RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALG  268 (332)
T ss_dssp             HHHHH-----HH---HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCE
T ss_pred             HHHHH-----HH---hcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEE
Confidence            75311     00   11468999999999632 1            2333   3678888874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.34  E-value=2.5e-12  Score=109.44  Aligned_cols=110  Identities=15%  Similarity=0.231  Sum_probs=90.2

Q ss_pred             ccCCHHHHHHHHHHh--cCCCCCEEEEEcCCccHHHHHHHHc-C-------CEEEEEeCCHHHHHHHHHHhcC-------
Q 023482          123 YMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA-G-------ATVLAIEKDQHMVGLVRERFAS-------  185 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~G~~t~~la~~-~-------~~v~gvD~s~~~l~~a~~~~~~-------  185 (281)
                      .+..+.+...+++.+  .+.++.+|||||||+|+++..+++. +       .+|+++|+++.+++.|+++...       
T Consensus        64 ~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~  143 (227)
T 1r18_A           64 TISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLD  143 (227)
T ss_dssp             EECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccC
Confidence            556788888999988  4778889999999999999999985 4       4999999999999999988754       


Q ss_pred             CCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          186 IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       186 ~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ..+++++++|+.+ ++.           ..+.||+|+.+.+.......+.++++++|.+
T Consensus       144 ~~~v~~~~~d~~~-~~~-----------~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~l  190 (227)
T 1r18_A          144 SGQLLIVEGDGRK-GYP-----------PNAPYNAIHVGAAAPDTPTELINQLASGGRL  190 (227)
T ss_dssp             HTSEEEEESCGGG-CCG-----------GGCSEEEEEECSCBSSCCHHHHHTEEEEEEE
T ss_pred             CCceEEEECCccc-CCC-----------cCCCccEEEECCchHHHHHHHHHHhcCCCEE
Confidence            2489999999987 322           2267999999988776667777888887765

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.34  E-value=1.8e-12  Score=114.20  Aligned_cols=99  Identities=18%  Similarity=0.197  Sum_probs=79.4

Q ss_pred             HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchh
Q 023482          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~  206 (281)
                      .++.+.+  .+|.+|||+|||+|.+++.+|..+ ++|+++|+|+.+++.+++|++.++   +++++++|+.+++.     
T Consensus       117 ~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-----  189 (278)
T 3k6r_A          117 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-----  189 (278)
T ss_dssp             HHHHHHC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-----
T ss_pred             HHHHHhc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-----
Confidence            3444444  478999999999999999999986 599999999999999999988664   79999999988742     


Q ss_pred             hHHHhhcCCCCccEEEEcCCCccc--HHHHHHhccCCCCc
Q 023482          207 SLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLPMGDIF  244 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~~--~~~~~~ll~~~~~~  244 (281)
                              .+.||.|+.|+|+...  -+...+++++||.+
T Consensus       190 --------~~~~D~Vi~~~p~~~~~~l~~a~~~lk~gG~i  221 (278)
T 3k6r_A          190 --------ENIADRILMGYVVRTHEFIPKALSIAKDGAII  221 (278)
T ss_dssp             --------CSCEEEEEECCCSSGGGGHHHHHHHEEEEEEE
T ss_pred             --------ccCCCEEEECCCCcHHHHHHHHHHHcCCCCEE
Confidence                    3679999999887533  23445777777754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.34  E-value=1.9e-12  Score=108.29  Aligned_cols=76  Identities=22%  Similarity=0.321  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++....++++++++|+.++++.            .+.|
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~------------~~~f  108 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFP------------SASF  108 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSC------------SSCE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCC------------CCcc
Confidence            4678999999999999999999876 89999999999999999987656899999999988643            3679


Q ss_pred             cEEEEcCCC
Q 023482          219 AKVVANIPF  227 (281)
Q Consensus       219 d~Vi~n~P~  227 (281)
                      |+|+++.++
T Consensus       109 D~v~~~~~~  117 (215)
T 2pxx_A          109 DVVLEKGTL  117 (215)
T ss_dssp             EEEEEESHH
T ss_pred             cEEEECcch
Confidence            999998765

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.34  E-value=6.4e-12  Score=107.79  Aligned_cols=101  Identities=13%  Similarity=0.143  Sum_probs=80.9

Q ss_pred             HhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      .+.+++|.+|||+|||+|+++..+++.   .++|+|+|++++|++.++++..+.+|+..+.+|..+.....         
T Consensus        72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~---------  142 (233)
T 4df3_A           72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYR---------  142 (233)
T ss_dssp             CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGT---------
T ss_pred             hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccc---------
Confidence            356789999999999999999999987   36999999999999999999887789999999987643211         


Q ss_pred             cCCCCccEEEEcCCCcccHHH----HHHhccCCCCcc
Q 023482          213 KSSSGFAKVVANIPFNISTDV----IKQLLPMGDIFS  245 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~~~~----~~~ll~~~~~~~  245 (281)
                      ...+.+|+|+.+.++......    +.++++++|.+.
T Consensus       143 ~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lv  179 (233)
T 4df3_A          143 HLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYML  179 (233)
T ss_dssp             TTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEE
Confidence            223678999999887765432    247788888763

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.34  E-value=5.1e-12  Score=110.85  Aligned_cols=89  Identities=21%  Similarity=0.401  Sum_probs=72.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRS  203 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d  203 (281)
                      .+++.+++.+. .++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|+++....+  +++++++|+.+..   
T Consensus        97 ~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---  172 (276)
T 2b3t_A           97 CLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---  172 (276)
T ss_dssp             HHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---
T ss_pred             HHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---
Confidence            35666666665 56779999999999999999976  6799999999999999999986443  7999999997631   


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                                ..+.||+|++||||...
T Consensus       173 ----------~~~~fD~Iv~npPy~~~  189 (276)
T 2b3t_A          173 ----------AGQQFAMIVSNPPYIDE  189 (276)
T ss_dssp             ----------TTCCEEEEEECCCCBCT
T ss_pred             ----------ccCCccEEEECCCCCCc
Confidence                      13679999999999653

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.34  E-value=1.1e-11  Score=105.58  Aligned_cols=110  Identities=15%  Similarity=0.196  Sum_probs=79.7

Q ss_pred             CCHHHHHH---HHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC----CCeEEEEc
Q 023482          125 LNSEINDQ---LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI----DQLKVLQE  194 (281)
Q Consensus       125 ~~~~~~~~---l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~----~~v~~~~g  194 (281)
                      ..+.....   ++...+..++.+|||||||+|+.+..+++.   +++|+++|+++.+++.|++++...    ++++++++
T Consensus        37 i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g  116 (221)
T 3dr5_A           37 PDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS  116 (221)
T ss_dssp             CCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred             CCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc
Confidence            34444333   333333334459999999999999999985   579999999999999999998753    37999999


Q ss_pred             CccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHH---HHhccCCCCc
Q 023482          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIF  244 (281)
Q Consensus       195 D~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~---~~ll~~~~~~  244 (281)
                      |+.+....          ...+.||+||.+.+.......+   .+++++||.+
T Consensus       117 da~~~l~~----------~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  159 (221)
T 3dr5_A          117 RPLDVMSR----------LANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGAL  159 (221)
T ss_dssp             CHHHHGGG----------SCTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEE
T ss_pred             CHHHHHHH----------hcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEE
Confidence            99875311          1237899999987765544444   4677777654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.34  E-value=4.2e-12  Score=111.61  Aligned_cols=100  Identities=18%  Similarity=0.247  Sum_probs=79.8

Q ss_pred             HhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcC
Q 023482          136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++....+ +++++++|+.+.++             
T Consensus       115 ~~~~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-------------  181 (286)
T 3m70_A          115 AAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-------------  181 (286)
T ss_dssp             HHHHSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-------------
T ss_pred             HhhccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-------------
Confidence            3333467899999999999999999998999999999999999999987665 89999999998764             


Q ss_pred             CCCccEEEEcCCCcccH-----HH---HHHhccCCCCcceEE
Q 023482          215 SSGFAKVVANIPFNIST-----DV---IKQLLPMGDIFSEVV  248 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~~~-----~~---~~~ll~~~~~~~~~~  248 (281)
                      .+.||+|+++.+++...     .+   +.++++++|.+-...
T Consensus       182 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          182 QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            37899999988765331     22   346677777654333

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.34  E-value=4.6e-12  Score=109.60  Aligned_cols=109  Identities=15%  Similarity=0.192  Sum_probs=83.0

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcccc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~  199 (281)
                      .+.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...   ++++++++|+.+.
T Consensus        48 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~  127 (248)
T 3tfw_A           48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS  127 (248)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence            3444444444445557889999999999999999987   679999999999999999998754   3799999999773


Q ss_pred             -ccccchhhHHHhhcCCCCccEEEEcCCCcccHHHH---HHhccCCCCc
Q 023482          200 -HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIF  244 (281)
Q Consensus       200 -~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~---~~ll~~~~~~  244 (281)
                       +..          ...+.||+|+.+.+.....+.+   .+++++||.+
T Consensus       128 l~~~----------~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  166 (248)
T 3tfw_A          128 LESL----------GECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLI  166 (248)
T ss_dssp             HHTC----------CSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEE
T ss_pred             HHhc----------CCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEE
Confidence             211          1234899999988765544444   4788888865

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.33  E-value=4.9e-12  Score=106.98  Aligned_cols=97  Identities=13%  Similarity=0.153  Sum_probs=74.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++.+|||||||+|.++..+++.  +.+|+|||+++.+++.|+++....  .|++++++|+.+++.      .    ...+
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~------~----~~~~  107 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD------V----FEPG  107 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH------H----CCTT
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh------h----cCcC
Confidence            5679999999999999999987  679999999999999999987654  489999999988541      0    1235


Q ss_pred             CccEEEEcCCCcc--------------cHHHHHHhccCCCCcceE
Q 023482          217 GFAKVVANIPFNI--------------STDVIKQLLPMGDIFSEV  247 (281)
Q Consensus       217 ~~d~Vi~n~P~~~--------------~~~~~~~ll~~~~~~~~~  247 (281)
                      .+|.|+.+.|-.+              .-..+.++++++|.+...
T Consensus       108 ~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          108 EVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             SCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             CcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence            7899988754321              123345788888876433

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.33  E-value=4.7e-12  Score=108.08  Aligned_cols=100  Identities=14%  Similarity=0.152  Sum_probs=77.9

Q ss_pred             HHHhcCCCCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccc----cccccchhh
Q 023482          134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK----CHIRSHMLS  207 (281)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~----~~~~d~~~d  207 (281)
                      ++.+.+.++.+|||+|||+|.++..+++. + .+|+|+|+++.+++.|+++.....++.++.+|+.+    .++      
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~------  140 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANI------  140 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTT------
T ss_pred             ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCccccccc------
Confidence            34445567889999999999999999988 4 79999999999999999988766799999999987    332      


Q ss_pred             HHHhhcCCCCccEEEEcCCCccc----HHHHHHhccCCCCcce
Q 023482          208 LFERRKSSSGFAKVVANIPFNIS----TDVIKQLLPMGDIFSE  246 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~----~~~~~~ll~~~~~~~~  246 (281)
                            . ..||+|+.+++....    -..+.++++++|.+..
T Consensus       141 ------~-~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i  176 (230)
T 1fbn_A          141 ------V-EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMI  176 (230)
T ss_dssp             ------S-CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ------C-ccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEE
Confidence                  2 579999988664311    2334567788876543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.33  E-value=2.2e-11  Score=106.99  Aligned_cols=107  Identities=16%  Similarity=0.216  Sum_probs=84.4

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~  204 (281)
                      ....+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.|+++....   ++++++.+|+.+++    
T Consensus        52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----  127 (287)
T 1kpg_A           52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----  127 (287)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC----
T ss_pred             HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC----
Confidence            4566777777788899999999999999999954 789999999999999999988754   38999999997653    


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCccc-----H---HHHHHhccCCCCcceEEEe
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNIS-----T---DVIKQLLPMGDIFSEVVLL  250 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~-----~---~~~~~ll~~~~~~~~~~~~  250 (281)
                                 +.||+|+++..++..     .   ..+.++++++|.+......
T Consensus       128 -----------~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          128 -----------EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             -----------CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             -----------CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence                       578999987544322     2   3335788999887554444

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.33  E-value=1e-11  Score=109.09  Aligned_cols=106  Identities=14%  Similarity=0.200  Sum_probs=81.6

Q ss_pred             HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhh
Q 023482          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ..++..+... +.+|||||||+|.++..++..+.+|+|+|+++.+++.|+++....   ++++++++|+.+++.      
T Consensus        59 ~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------  131 (285)
T 4htf_A           59 DRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS------  131 (285)
T ss_dssp             HHHHHHTCSS-CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG------
T ss_pred             HHHHHhcCCC-CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh------
Confidence            3455555543 679999999999999999999999999999999999999998765   379999999998862      


Q ss_pred             HHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceEE
Q 023482          208 LFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~~  248 (281)
                           ...+.||+|+++..++...      ..+.++++++|.+....
T Consensus       132 -----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  173 (285)
T 4htf_A          132 -----HLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMF  173 (285)
T ss_dssp             -----GCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -----hcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEE
Confidence                 1237899999986654332      33457888888764443

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.32  E-value=2.1e-11  Score=108.79  Aligned_cols=108  Identities=16%  Similarity=0.194  Sum_probs=86.1

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d  203 (281)
                      .....+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.|+++....+   +++++++|+.+++   
T Consensus        77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---  153 (318)
T 2fk8_A           77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---  153 (318)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---
Confidence            45566777777788899999999999999999988 8899999999999999999987543   6999999998763   


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCccc-----H---HHHHHhccCCCCcceEEEe
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNIS-----T---DVIKQLLPMGDIFSEVVLL  250 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~~-----~---~~~~~ll~~~~~~~~~~~~  250 (281)
                                  +.||+|+++..++..     .   ..+.++++++|.+......
T Consensus       154 ------------~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          154 ------------EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             ------------CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ------------CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence                        579999998555333     2   2335788899887554443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.32  E-value=4.8e-12  Score=107.32  Aligned_cols=115  Identities=13%  Similarity=0.139  Sum_probs=84.9

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~  196 (281)
                      ....+.....+...+...++.+|||||||+|.++..+++.   +++|+++|+++.+++.|++++...+   +++++++|+
T Consensus        40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (221)
T 3u81_A           40 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS  119 (221)
T ss_dssp             GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH
Confidence            4556666666666666667889999999999999999984   6799999999999999999886543   699999998


Q ss_pred             ccc-ccccchhhHHHhhcCCCCccEEEEcCCCcccHH---HHH--HhccCCCCc
Q 023482          197 VKC-HIRSHMLSLFERRKSSSGFAKVVANIPFNISTD---VIK--QLLPMGDIF  244 (281)
Q Consensus       197 ~~~-~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~---~~~--~ll~~~~~~  244 (281)
                      .+. +.....       ...+.||+|+.+.+.....+   .+.  +++++|+.+
T Consensus       120 ~~~l~~~~~~-------~~~~~fD~V~~d~~~~~~~~~~~~~~~~~~LkpgG~l  166 (221)
T 3u81_A          120 QDLIPQLKKK-------YDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVL  166 (221)
T ss_dssp             HHHGGGTTTT-------SCCCCCSEEEECSCGGGHHHHHHHHHHTTCCCTTCEE
T ss_pred             HHHHHHHHHh-------cCCCceEEEEEcCCcccchHHHHHHHhccccCCCeEE
Confidence            763 211000       01257999999886655443   233  677888765

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.32  E-value=5e-12  Score=107.52  Aligned_cols=98  Identities=23%  Similarity=0.311  Sum_probs=75.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcccc-ccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC-HIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~-~~~d~~~d~v~~~~~~  215 (281)
                      ++.+|||||||+|.++..+++.  +.+|+|||+++.+++.|+++....  .|++++++|+.++ +..          ...
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~----------~~~  103 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKM----------IPD  103 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHH----------SCT
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH----------cCC
Confidence            5679999999999999999987  468999999999999999987654  3899999999874 200          134


Q ss_pred             CCccEEEEc--CCCcc------------cHHHHHHhccCCCCcceEE
Q 023482          216 SGFAKVVAN--IPFNI------------STDVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       216 ~~~d~Vi~n--~P~~~------------~~~~~~~ll~~~~~~~~~~  248 (281)
                      +.+|.|+.+  .|+..            .-..+.+++++||.+....
T Consensus       104 ~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          104 NSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             TCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            789999998  45432            2233457788888764443

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.32  E-value=8.7e-12  Score=107.03  Aligned_cols=110  Identities=13%  Similarity=0.101  Sum_probs=79.7

Q ss_pred             HHHHHHHHHhc---CCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccccc
Q 023482          128 EINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI  201 (281)
Q Consensus       128 ~~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~  201 (281)
                      .....++..+.   +.++.+|||+|||+|..+..+++.   .++|+|+|+++.|++.+.+......|+.++++|+.....
T Consensus        60 kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~  139 (232)
T 3id6_C           60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQS  139 (232)
T ss_dssp             HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGG
T ss_pred             HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchh
Confidence            44555655554   778999999999999999999986   459999999999876554443333589999999986432


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcCCCcccHHHH----HHhccCCCCcce
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANIPFNISTDVI----KQLLPMGDIFSE  246 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~----~~ll~~~~~~~~  246 (281)
                      ..         ...+.||+|++|.+......++    .++|++||.+..
T Consensus       140 ~~---------~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvi  179 (232)
T 3id6_C          140 YK---------SVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLL  179 (232)
T ss_dssp             TT---------TTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hh---------ccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEE
Confidence            11         1135799999998875444333    348888887643

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.32  E-value=2.5e-12  Score=111.73  Aligned_cols=95  Identities=19%  Similarity=0.289  Sum_probs=75.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...++ .++++++|+.+. +            ..+.
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~------------~~~~  184 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-L------------PFGP  184 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-G------------GGCC
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-C------------cCCC
Confidence            4577899999999999999999988899999999999999999987554 389999998763 1            1267


Q ss_pred             ccEEEEcCCCcccHHHH---HHhccCCCCcce
Q 023482          218 FAKVVANIPFNISTDVI---KQLLPMGDIFSE  246 (281)
Q Consensus       218 ~d~Vi~n~P~~~~~~~~---~~ll~~~~~~~~  246 (281)
                      ||+|++|.+.+....++   .++++++|.+..
T Consensus       185 fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lil  216 (254)
T 2nxc_A          185 FDLLVANLYAELHAALAPRYREALVPGGRALL  216 (254)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHHHcCCCCEEEE
Confidence            99999998776544433   466777776644

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.32  E-value=1.9e-12  Score=113.59  Aligned_cols=102  Identities=25%  Similarity=0.384  Sum_probs=82.8

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhH
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      +...+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.|++.|+++.   .+++++++|+.++++       
T Consensus        45 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~-------  114 (279)
T 3ccf_A           45 YGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY---PHLHFDVADARNFRV-------  114 (279)
T ss_dssp             SCCHHHHHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTSCEEECCTTTCCC-------
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC---CCCEEEECChhhCCc-------
Confidence            3445667777778889999999999999999998889999999999999999876   478999999998764       


Q ss_pred             HHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcce
Q 023482          209 FERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSE  246 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~  246 (281)
                            .+.||+|+++..+++..      ..+.+++++||.+..
T Consensus       115 ------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~  152 (279)
T 3ccf_A          115 ------DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVA  152 (279)
T ss_dssp             ------SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             ------CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEE
Confidence                  26799999987765422      334577888887643

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.32  E-value=2.9e-12  Score=110.66  Aligned_cols=110  Identities=19%  Similarity=0.206  Sum_probs=78.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCC---C---C----------
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---D---Q----------  188 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~---~---~----------  188 (281)
                      ++..+++.+...++.+|||+|||+|.++..++..    +.+|+|+|+|+.+++.|+++....   +   +          
T Consensus        39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~  118 (250)
T 1o9g_A           39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER  118 (250)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhh
Confidence            4444454444445679999999999999999886    569999999999999999887654   2   2          


Q ss_pred             ---------------eE-------------EEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccH---------
Q 023482          189 ---------------LK-------------VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---------  231 (281)
Q Consensus       189 ---------------v~-------------~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~---------  231 (281)
                                     ++             ++++|+.+.....    ..   .....||+|++|+||....         
T Consensus       119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~---~~~~~fD~Iv~npp~~~~~~~~~~~~~~  191 (250)
T 1o9g_A          119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALS----AV---LAGSAPDVVLTDLPYGERTHWEGQVPGQ  191 (250)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHH----HH---HTTCCCSEEEEECCGGGSSSSSSCCCHH
T ss_pred             cccccchhhhhhhhhhhhhccccccccccceeecccccccccc----cc---cCCCCceEEEeCCCeecccccccccccc
Confidence                           66             9999987732100    00   0234799999999985422         


Q ss_pred             ---HH---HHHhccCCCCcc
Q 023482          232 ---DV---IKQLLPMGDIFS  245 (281)
Q Consensus       232 ---~~---~~~ll~~~~~~~  245 (281)
                         .+   +.++++++|.+.
T Consensus       192 ~~~~~l~~~~~~LkpgG~l~  211 (250)
T 1o9g_A          192 PVAGLLRSLASALPAHAVIA  211 (250)
T ss_dssp             HHHHHHHHHHHHSCTTCEEE
T ss_pred             HHHHHHHHHHHhcCCCcEEE
Confidence               22   346778888654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.32  E-value=8e-12  Score=107.45  Aligned_cols=108  Identities=19%  Similarity=0.162  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchh
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~  206 (281)
                      .....+++.+...++.+|||||||+|.++..++.. ..+|+|+|+++.+++.|+++.....+++++++|+.++++.    
T Consensus        80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----  155 (254)
T 1xtp_A           80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLP----  155 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCC----
T ss_pred             HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCC----
Confidence            34566777776667889999999999999999887 4589999999999999999987656899999999988753    


Q ss_pred             hHHHhhcCCCCccEEEEcCCCcccH--------HHHHHhccCCCCcceE
Q 023482          207 SLFERRKSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~~~~  247 (281)
                              .+.||+|+++..++...        ..+.++++++|.+...
T Consensus       156 --------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~  196 (254)
T 1xtp_A          156 --------PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFK  196 (254)
T ss_dssp             --------SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------CCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                    26799999987654431        2234677777766433

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.32  E-value=5.6e-12  Score=114.23  Aligned_cols=103  Identities=17%  Similarity=0.335  Sum_probs=80.4

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~  204 (281)
                      +.+.+.+.+...++.+|||||||+|.++..+++.++ +|+|+|+++ +++.|+++...+   ++++++++|+.+++++  
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--  128 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--  128 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCC--
Confidence            345566666667888999999999999999999865 999999996 999999887654   4899999999988753  


Q ss_pred             hhhHHHhhcCCCCccEEEEcC-CCccc-----HHHH---HHhccCCCCc
Q 023482          205 MLSLFERRKSSSGFAKVVANI-PFNIS-----TDVI---KQLLPMGDIF  244 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~-P~~~~-----~~~~---~~ll~~~~~~  244 (281)
                                .++||+|+++. +|...     ..++   .++++++|.+
T Consensus       129 ----------~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  167 (340)
T 2fyt_A          129 ----------VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSV  167 (340)
T ss_dssp             ----------CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEE
T ss_pred             ----------CCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEE
Confidence                      26799999986 44321     1222   4788888866

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.32  E-value=2.4e-12  Score=119.27  Aligned_cols=94  Identities=21%  Similarity=0.299  Sum_probs=75.5

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeE
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLK  190 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~  190 (281)
                      ..+...|+ |++++.+++.+++.+...++.+|||+|||+|.++..+++.   +.+++|+|+++.+++.|       .+++
T Consensus        13 ~~~~~~g~-~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------~~~~   84 (421)
T 2ih2_A           13 SAPRSLGR-VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAE   84 (421)
T ss_dssp             ---------CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEE
T ss_pred             hhcccCce-EeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------CCCc
Confidence            34455666 8999999999999998666779999999999999999985   46999999999999877       4789


Q ss_pred             EEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       191 ~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      ++++|+.+.+.             .+.||+|++||||.
T Consensus        85 ~~~~D~~~~~~-------------~~~fD~Ii~NPPy~  109 (421)
T 2ih2_A           85 GILADFLLWEP-------------GEAFDLILGNPPYG  109 (421)
T ss_dssp             EEESCGGGCCC-------------SSCEEEEEECCCCC
T ss_pred             EEeCChhhcCc-------------cCCCCEEEECcCcc
Confidence            99999987642             26799999999995

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.32  E-value=4.3e-12  Score=116.24  Aligned_cols=115  Identities=12%  Similarity=0.043  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccc--
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR--  202 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~--  202 (281)
                      ..+...+++.+... +.+|||+|||+|.+++.++....+|+|+|+++.+++.|++|...++  +++++++|+.++...  
T Consensus       200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~  278 (369)
T 3bt7_A          200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN  278 (369)
T ss_dssp             HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHS
T ss_pred             HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHh
Confidence            34555666666554 5789999999999999999877899999999999999999987654  899999999875210  


Q ss_pred             cc-hhhHHHhh-cCCCCccEEEEcCCCccc-HHHHHHhccCCCC
Q 023482          203 SH-MLSLFERR-KSSSGFAKVVANIPFNIS-TDVIKQLLPMGDI  243 (281)
Q Consensus       203 d~-~~d~v~~~-~~~~~~d~Vi~n~P~~~~-~~~~~~ll~~~~~  243 (281)
                      +. .|+.+... .....||+|+.|||+... ..+++.+. +++.
T Consensus       279 ~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~-~~g~  321 (369)
T 3bt7_A          279 GVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ-AYPR  321 (369)
T ss_dssp             SCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHT-TSSE
T ss_pred             hccccccccccccccCCCCEEEECcCccccHHHHHHHHh-CCCE
Confidence            00 00000000 001379999999999644 44555554 4443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.32  E-value=8.7e-12  Score=109.18  Aligned_cols=110  Identities=21%  Similarity=0.350  Sum_probs=89.0

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEcC
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQED  195 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~-----~~v~~~~gD  195 (281)
                      ...+.....++..+.+.++.+|||+|||+|.++..++..   +.+|+++|+++.+++.|++++...     .+++++++|
T Consensus        82 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d  161 (280)
T 1i9g_A           82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  161 (280)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             eecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence            345667788888888889999999999999999999986   579999999999999999987543     489999999


Q ss_pred             ccccccccchhhHHHhhcCCCCccEEEEcCCCc-ccHHHHHHhccCCCCcc
Q 023482          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       196 ~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~-~~~~~~~~ll~~~~~~~  245 (281)
                      +.+.++.            .+.||+|++++|-. ..-..+.+++++++.+.
T Consensus       162 ~~~~~~~------------~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~  200 (280)
T 1i9g_A          162 LADSELP------------DGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLM  200 (280)
T ss_dssp             GGGCCCC------------TTCEEEEEEESSCGGGGHHHHHHHEEEEEEEE
T ss_pred             hHhcCCC------------CCceeEEEECCcCHHHHHHHHHHhCCCCCEEE
Confidence            9987643            36799999998753 33345567777777653

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.32  E-value=7.1e-12  Score=107.86  Aligned_cols=103  Identities=21%  Similarity=0.326  Sum_probs=78.4

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhh
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ++..++......++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++....+ +++++++|+.++++.     
T Consensus        29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-----  103 (252)
T 1wzn_A           29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-----  103 (252)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-----
T ss_pred             HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-----
Confidence            34455555555677899999999999999999999999999999999999999886544 899999999987642     


Q ss_pred             HHHhhcCCCCccEEEEc---CCCcccH------HHHHHhccCCCCc
Q 023482          208 LFERRKSSSGFAKVVAN---IPFNIST------DVIKQLLPMGDIF  244 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n---~P~~~~~------~~~~~ll~~~~~~  244 (281)
                              +.||+|++.   .++....      ..+.++++++|.+
T Consensus       104 --------~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l  141 (252)
T 1wzn_A          104 --------NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVF  141 (252)
T ss_dssp             --------SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             --------CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEE
Confidence                    579999964   2332111      2234667777765

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.32  E-value=3.8e-12  Score=109.79  Aligned_cols=105  Identities=17%  Similarity=0.231  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~  204 (281)
                      ......+++.+...++.+|||||||+|.++..++..  +.+|+|+|+++.+++.++++.   .+++++++|+.+++ .+ 
T Consensus        19 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~~-   93 (259)
T 2p35_A           19 TRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---PNTNFGKADLATWK-PA-   93 (259)
T ss_dssp             GHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---TTSEEEECCTTTCC-CS-
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---CCcEEEECChhhcC-cc-
Confidence            345567777777778889999999999999999988  789999999999999999883   48999999999876 32 


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCcccH---HH---HHHhccCCCCcceE
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNIST---DV---IKQLLPMGDIFSEV  247 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~~---~~---~~~ll~~~~~~~~~  247 (281)
                                 +.||+|+++..+++..   .+   +.++++++|.+...
T Consensus        94 -----------~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  131 (259)
T 2p35_A           94 -----------QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQ  131 (259)
T ss_dssp             -----------SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEE
T ss_pred             -----------CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEE
Confidence                       6799999988776543   22   24667777766433

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.32  E-value=5.6e-12  Score=106.55  Aligned_cols=101  Identities=14%  Similarity=0.062  Sum_probs=73.7

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+.++.+|||+|||+|..+..+++..  .+|+|+|+|+.|++.+.+......++.++.+|+.+.....         ...
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~---------~~~  124 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYS---------GIV  124 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTT---------TTC
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhc---------ccc
Confidence            45678899999999999999999873  6999999999988766555444458999999987641100         112


Q ss_pred             CCccEEEEcCCCcccH----HHHHHhccCCCCcceE
Q 023482          216 SGFAKVVANIPFNIST----DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       216 ~~~d~Vi~n~P~~~~~----~~~~~ll~~~~~~~~~  247 (281)
                      +.||+|+++.+.....    ..+.+++++||.+...
T Consensus       125 ~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          125 EKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            6799999997554332    3346788888876443

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.31  E-value=2.6e-11  Score=103.95  Aligned_cols=110  Identities=16%  Similarity=0.226  Sum_probs=89.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcccccc
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHI  201 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~  201 (281)
                      ..+.....++..+.+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|+++....   .+++++.+|+.+..+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  154 (248)
T 2yvl_A           75 IYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV  154 (248)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC
T ss_pred             ccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc
Confidence            34566678888888888999999999999999999988789999999999999999987643   489999999987531


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcCCCc-ccHHHHHHhccCCCCcce
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGDIFSE  246 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~-~~~~~~~~ll~~~~~~~~  246 (281)
                                  ....||+|++++|-. ..-..+.++++++|.+..
T Consensus       155 ------------~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~  188 (248)
T 2yvl_A          155 ------------PEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGF  188 (248)
T ss_dssp             ------------CTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEE
T ss_pred             ------------CCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEE
Confidence                        235799999998854 444556788888887633

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.31  E-value=1.1e-11  Score=105.88  Aligned_cols=101  Identities=20%  Similarity=0.281  Sum_probs=80.4

Q ss_pred             HHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHH
Q 023482          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      .+...+...++.+|||||||+|.++..+++.+. +|+|+|+++.+++.|+++... .+++++++|+.++++.        
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~--------  104 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-TGITYERADLDKLHLP--------  104 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-SSEEEEECCGGGCCCC--------
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-CCceEEEcChhhccCC--------
Confidence            455666666788999999999999999999887 999999999999999988764 3799999999987743        


Q ss_pred             hhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcc
Q 023482          211 RRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFS  245 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~  245 (281)
                          .+.||+|+++..++...      ..+.++++++|.+-
T Consensus       105 ----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~  141 (243)
T 3bkw_A          105 ----QDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFV  141 (243)
T ss_dssp             ----TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             ----CCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEE
Confidence                36799999987654432      23346777777653

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.31  E-value=3.9e-12  Score=107.75  Aligned_cols=113  Identities=14%  Similarity=0.133  Sum_probs=83.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~  196 (281)
                      +...+.....+...+...++.+|||||||+|..+..++..   +.+|+++|+++.+++.|++++...+   +++++++|+
T Consensus        46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  125 (225)
T 3tr6_A           46 MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA  125 (225)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH
Confidence            3445555555555555557789999999999999999987   6799999999999999999986543   699999999


Q ss_pred             cccccccchhhHHHhhcC---CCCccEEEEcCCCcccHHHH---HHhccCCCCc
Q 023482          197 VKCHIRSHMLSLFERRKS---SSGFAKVVANIPFNISTDVI---KQLLPMGDIF  244 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~---~~~~d~Vi~n~P~~~~~~~~---~~ll~~~~~~  244 (281)
                      .+....      .   ..   .+.||+|+.+.+......++   .+++++||.+
T Consensus       126 ~~~~~~------~---~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~l  170 (225)
T 3tr6_A          126 KDTLAE------L---IHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLI  170 (225)
T ss_dssp             HHHHHH------H---HTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHH------h---hhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEE
Confidence            764210      0   11   16899999988755444333   4677777765

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.30  E-value=4.3e-12  Score=108.31  Aligned_cols=101  Identities=14%  Similarity=0.169  Sum_probs=77.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchh
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~  206 (281)
                      ...++......+ .+|||||||+|.++..++..+.+|+|+|+++.+++.|+++....   .+++++++|+.+++.     
T Consensus        56 l~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----  129 (235)
T 3lcc_A           56 IVHLVDTSSLPL-GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP-----  129 (235)
T ss_dssp             HHHHHHTTCSCC-EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC-----
T ss_pred             HHHHHHhcCCCC-CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC-----
Confidence            334444444433 49999999999999999988889999999999999999998754   379999999998752     


Q ss_pred             hHHHhhcCCCCccEEEEcCCCcccH--------HHHHHhccCCCCc
Q 023482          207 SLFERRKSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIF  244 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~  244 (281)
                              .+.||+|+++..++...        ..+.++++++|.+
T Consensus       130 --------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l  167 (235)
T 3lcc_A          130 --------TELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGEL  167 (235)
T ss_dssp             --------SSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             --------CCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEE
Confidence                    25899999976554322        3334777877765

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.30  E-value=4.9e-12  Score=112.07  Aligned_cols=109  Identities=25%  Similarity=0.348  Sum_probs=83.8

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEcCccccc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCH  200 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-----~~v~~~~gD~~~~~  200 (281)
                      .......+++.+...++ +|||||||+|.++..+++.+.+|+|+|+++.+++.|+++....     .+++++++|+.+++
T Consensus        68 ~~~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (299)
T 3g2m_A           68 GTSEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA  146 (299)
T ss_dssp             CHHHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred             ccHHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence            45667777787775444 8999999999999999999899999999999999999998765     47999999999987


Q ss_pred             cccchhhHHHhhcCCCCccEEEEc-CCCcc-c----H---HHHHHhccCCCCcceEE
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVAN-IPFNI-S----T---DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n-~P~~~-~----~---~~~~~ll~~~~~~~~~~  248 (281)
                      +             .+.||+|+.. ..++. .    .   ..+.++++++|.+....
T Consensus       147 ~-------------~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  190 (299)
T 3g2m_A          147 L-------------DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSL  190 (299)
T ss_dssp             C-------------SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c-------------CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            4             2679988853 22222 2    1   33357778888764433

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.30  E-value=1e-11  Score=106.00  Aligned_cols=105  Identities=18%  Similarity=0.207  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      .+...+...+.  ++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++.. ..+++++++|+.+++++     
T Consensus        42 ~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~-----  113 (242)
T 3l8d_A           42 TIIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGE-GPDLSFIKGDLSSLPFE-----  113 (242)
T ss_dssp             THHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTC-BTTEEEEECBTTBCSSC-----
T ss_pred             HHHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcc-cCCceEEEcchhcCCCC-----
Confidence            35555555554  67899999999999999999999999999999999999998752 35899999999998753     


Q ss_pred             HHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482          208 LFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~  247 (281)
                             .+.||+|+++..++...      ..+.++++++|.+...
T Consensus       114 -------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~  152 (242)
T 3l8d_A          114 -------NEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIA  152 (242)
T ss_dssp             -------TTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -------CCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEE
Confidence                   36899999976554322      2335777887765433

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.30  E-value=9.7e-12  Score=108.39  Aligned_cols=108  Identities=24%  Similarity=0.270  Sum_probs=83.6

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-C--CEEEEEeCCHH------HHHHHHHHhcCC---CCeEEEEcC
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQH------MVGLVRERFASI---DQLKVLQED  195 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~v~gvD~s~~------~l~~a~~~~~~~---~~v~~~~gD  195 (281)
                      .....+++.+.+.++.+|||||||+|.++..+++. +  .+|+|+|+++.      +++.|++++...   ++++++++|
T Consensus        30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d  109 (275)
T 3bkx_A           30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT  109 (275)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence            34566777888888999999999999999999987 4  79999999997      999999998755   379999998


Q ss_pred             ---ccccccccchhhHHHhhcCCCCccEEEEcCCCccc------HHHHHHhccCCCCcceE
Q 023482          196 ---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS------TDVIKQLLPMGDIFSEV  247 (281)
Q Consensus       196 ---~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~------~~~~~~ll~~~~~~~~~  247 (281)
                         ...+++            ..+.||+|+++..++..      ...++.+++++|.+...
T Consensus       110 ~~~~~~~~~------------~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~  158 (275)
T 3bkx_A          110 NLSDDLGPI------------ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVA  158 (275)
T ss_dssp             CTTTCCGGG------------TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEE
T ss_pred             hhhhccCCC------------CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEE
Confidence               333433            23689999998776433      24446777777766443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.30  E-value=1.1e-11  Score=105.26  Aligned_cols=101  Identities=13%  Similarity=0.136  Sum_probs=78.2

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+.++.+|||+|||+|.++..+++. +  .+|+|+|+++.+++.++++.....+++++++|+.+.....         ..
T Consensus        70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---------~~  140 (227)
T 1g8a_A           70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYR---------AL  140 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGT---------TT
T ss_pred             CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhh---------cc
Confidence            3667889999999999999999986 3  6999999999999999998877679999999998743110         11


Q ss_pred             CCCccEEEEcCCCcccH----HHHHHhccCCCCcceE
Q 023482          215 SSGFAKVVANIPFNIST----DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~~~----~~~~~ll~~~~~~~~~  247 (281)
                      .+.||+|++++|.....    ..+.++++++|.+-..
T Consensus       141 ~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          141 VPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            25799999998854332    2345788888876433

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.30  E-value=7.6e-12  Score=109.24  Aligned_cols=105  Identities=21%  Similarity=0.290  Sum_probs=81.8

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccch
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~  205 (281)
                      ...+.......++.+|||||||+|.++..+++.  +.+|+|+|+++.+++.|+++....  .+++++.+|+.++++.   
T Consensus        26 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~---  102 (276)
T 3mgg_A           26 EKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFE---  102 (276)
T ss_dssp             HHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSC---
T ss_pred             HHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCC---
Confidence            333444444567889999999999999999988  679999999999999999988654  3899999999998754   


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcce
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSE  246 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~  246 (281)
                               .+.||+|+++..++...      ..+.++++++|.+..
T Consensus       103 ---------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~  140 (276)
T 3mgg_A          103 ---------DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITV  140 (276)
T ss_dssp             ---------TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---------CCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEE
Confidence                     36899999986654332      234577888877643

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.30  E-value=1.8e-11  Score=113.00  Aligned_cols=94  Identities=12%  Similarity=0.180  Sum_probs=80.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---------------------------------------
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---------------------------------------  163 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---------------------------------------  163 (281)
                      -...+.++..++......++..|||++||+|.+++.++..+                                       
T Consensus       183 Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  262 (393)
T 3k0b_A          183 APIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ  262 (393)
T ss_dssp             CSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             CCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence            34567788889999888888899999999999998888652                                       


Q ss_pred             -CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          164 -ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       164 -~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                       .+|+|+|+|+.+++.|+.|...++   +++++++|+.+++.             ...||+||+||||..
T Consensus       263 ~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~-------------~~~fD~Iv~NPPYg~  319 (393)
T 3k0b_A          263 PLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT-------------EDEYGVVVANPPYGE  319 (393)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC-------------CCCSCEEEECCCCCC
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC-------------CCCCCEEEECCCCcc
Confidence             359999999999999999987654   69999999999763             257999999999964

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.29  E-value=1.2e-11  Score=111.68  Aligned_cols=111  Identities=20%  Similarity=0.298  Sum_probs=86.5

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHhcC-------------CCC
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-------------IDQ  188 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~-------------~~~  188 (281)
                      ..+.....++..+.+.++.+|||+|||+|.++..++.. +  .+|+|+|+++.+++.|+++...             ..+
T Consensus        89 ~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~  168 (336)
T 2b25_A           89 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  168 (336)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence            55667788888888889999999999999999999987 4  7999999999999999998763             248


Q ss_pred             eEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc-cHHHHHHhccCCCCcc
Q 023482          189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLPMGDIFS  245 (281)
Q Consensus       189 v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-~~~~~~~ll~~~~~~~  245 (281)
                      ++++++|+.+....          ...+.||+|++++|-.+ ..+.+.++++++|.+.
T Consensus       169 v~~~~~d~~~~~~~----------~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv  216 (336)
T 2b25_A          169 VDFIHKDISGATED----------IKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCA  216 (336)
T ss_dssp             EEEEESCTTCCC-----------------EEEEEECSSSTTTTHHHHGGGEEEEEEEE
T ss_pred             eEEEECChHHcccc----------cCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEE
Confidence            99999999886311          12256999999876543 3456677888887763

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.29  E-value=1.6e-11  Score=103.05  Aligned_cols=107  Identities=15%  Similarity=0.194  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccc
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~  198 (281)
                      ..+.....+...+...++.+|||||||+|..+..++..   +.+|+++|+++.+++.|++++...+   +++++++|+.+
T Consensus        40 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  119 (210)
T 3c3p_A           40 VDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG  119 (210)
T ss_dssp             CCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHH
Confidence            44444444333333346789999999999999999987   5799999999999999999876443   69999999976


Q ss_pred             c-ccccchhhHHHhhcCCCCccEEEEcCCCcccHHHH---HHhccCCCCc
Q 023482          199 C-HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIF  244 (281)
Q Consensus       199 ~-~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~---~~ll~~~~~~  244 (281)
                      . +.            ..+ ||+|+.+.+......++   .++++++|.+
T Consensus       120 ~~~~------------~~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~l  156 (210)
T 3c3p_A          120 IAAG------------QRD-IDILFMDCDVFNGADVLERMNRCLAKNALL  156 (210)
T ss_dssp             HHTT------------CCS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEE
T ss_pred             Hhcc------------CCC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEE
Confidence            4 21            125 99999987655444444   3566776654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.29  E-value=1.3e-11  Score=106.86  Aligned_cols=116  Identities=11%  Similarity=0.117  Sum_probs=84.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~  196 (281)
                      ....+.....+...+...++.+|||||||+|+.+..++..   +.+|+++|+++.+++.|++++...+   +++++++|+
T Consensus        61 ~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda  140 (247)
T 1sui_A           61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  140 (247)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH
Confidence            4455655555555555556789999999999999999986   6799999999999999999987543   799999999


Q ss_pred             ccc-ccccchhhHHHhhcCCCCccEEEEcCCCcccHH---HHHHhccCCCCc
Q 023482          197 VKC-HIRSHMLSLFERRKSSSGFAKVVANIPFNISTD---VIKQLLPMGDIF  244 (281)
Q Consensus       197 ~~~-~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~---~~~~ll~~~~~~  244 (281)
                      .+. +..      ...-...+.||+|+.+.+......   .+.+++++||.+
T Consensus       141 ~~~l~~l------~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  186 (247)
T 1sui_A          141 LPVLDEM------IKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVI  186 (247)
T ss_dssp             HHHHHHH------HHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCE
T ss_pred             HHHHHHH------HhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEE
Confidence            764 210      000001368999999876443333   345788888876

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.29  E-value=4.6e-12  Score=111.59  Aligned_cols=108  Identities=17%  Similarity=0.236  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC------CCeEEEEcCccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCH  200 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~------~~v~~~~gD~~~~~  200 (281)
                      ..+...+...+...++.+|||||||+|..+..++..+.+|+|+|+|+.+++.|+++....      .++.+..+|+.+++
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  122 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence            455666777776667889999999999999999999899999999999999998876221      27899999998876


Q ss_pred             ---cccchhhHHHhhcCCCCccEEEEc-CCCccc----------H---HHHHHhccCCCCcce
Q 023482          201 ---IRSHMLSLFERRKSSSGFAKVVAN-IPFNIS----------T---DVIKQLLPMGDIFSE  246 (281)
Q Consensus       201 ---~~d~~~d~v~~~~~~~~~d~Vi~n-~P~~~~----------~---~~~~~ll~~~~~~~~  246 (281)
                         +.            .+.||+|+++ ..++..          .   ..+.+++++||.+..
T Consensus       123 ~~~~~------------~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  173 (293)
T 3thr_A          123 KDVPA------------GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  173 (293)
T ss_dssp             HHSCC------------TTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccccc------------CCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEE
Confidence               32            3679999986 333221          1   233477788877643

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.29  E-value=1.4e-11  Score=113.32  Aligned_cols=93  Identities=12%  Similarity=0.159  Sum_probs=79.4

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC----------------------------------------
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG----------------------------------------  163 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~----------------------------------------  163 (281)
                      ...+.++..|+......++..|||++||+|.+++.++..+                                        
T Consensus       177 pl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  256 (384)
T 3ldg_A          177 PIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ  256 (384)
T ss_dssp             CCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence            4457788889998888888999999999999999888652                                        


Q ss_pred             CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          164 ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       164 ~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      .+|+|+|+|+.+++.|++|....+   +++++++|+.+++.             .+.||+||+||||..
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~-------------~~~fD~Iv~NPPYG~  312 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT-------------NKINGVLISNPPYGE  312 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC-------------CCCSCEEEECCCCTT
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc-------------cCCcCEEEECCchhh
Confidence            359999999999999999987654   69999999999763             257999999999963

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.29  E-value=1.3e-11  Score=109.34  Aligned_cols=114  Identities=8%  Similarity=0.005  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcCccc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVK  198 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~---~~~~v~gvD~s~~~l~~a~~~~~~~----~~v~~~~gD~~~  198 (281)
                      ++.+.+.+..... .++.+|||||||+|..+..+++   .+.+|+|+|+++.+++.|+++....    .+++++++|+.+
T Consensus        22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~  100 (299)
T 3g5t_A           22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD  100 (299)
T ss_dssp             CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred             CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence            4555666655543 4778999999999999999995   4679999999999999999987653    499999999999


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcccH-----HHHHHhccCCCCcce
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-----DVIKQLLPMGDIFSE  246 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-----~~~~~ll~~~~~~~~  246 (281)
                      +++.+..  .    ...+.||+|+++..+++..     ..+.+++++||.+..
T Consensus       101 ~~~~~~~--~----~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          101 FKFLGAD--S----VDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             CGGGCTT--T----TTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCccccc--c----ccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            8753200  0    1126899999987654431     233577888887643

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.28  E-value=1.2e-11  Score=108.49  Aligned_cols=104  Identities=19%  Similarity=0.367  Sum_probs=78.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (281)
                      ....++..+.+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|+++....   ++++++++|+.+ ++ 
T Consensus        98 ~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~-  175 (275)
T 1yb2_A           98 DASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FI-  175 (275)
T ss_dssp             --------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CC-
T ss_pred             hHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cC-
Confidence            3456677778888899999999999999999987   679999999999999999998765   489999999987 32 


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCc-ccHHHHHHhccCCCCcc
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~-~~~~~~~~ll~~~~~~~  245 (281)
                                 ..+.||+|++++|-. ..-..+.++++++|.+.
T Consensus       176 -----------~~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~  208 (275)
T 1yb2_A          176 -----------SDQMYDAVIADIPDPWNHVQKIASMMKPGSVAT  208 (275)
T ss_dssp             -----------CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEE
T ss_pred             -----------cCCCccEEEEcCcCHHHHHHHHHHHcCCCCEEE
Confidence                       236799999988743 23345567777777653

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.28  E-value=9.4e-12  Score=116.70  Aligned_cols=101  Identities=18%  Similarity=0.238  Sum_probs=84.1

Q ss_pred             CCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---------------CCEEEEEeCCHHHHHHH
Q 023482          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---------------GATVLAIEKDQHMVGLV  179 (281)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---------------~~~v~gvD~s~~~l~~a  179 (281)
                      .+...|+ |++++.+++.|++.+.+.++.+|||+|||+|.++..+++.               ..+++|+|+++.+++.|
T Consensus       146 ~~~~~G~-fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA  224 (445)
T 2okc_A          146 KKSGAGQ-YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA  224 (445)
T ss_dssp             TTTCCGG-GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred             ccccCCc-ccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHH
Confidence            3445566 8899999999999999888889999999999999888763               35799999999999999


Q ss_pred             HHHhcCC--C--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          180 RERFASI--D--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       180 ~~~~~~~--~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      +.+....  +  ++.+.++|+...+.             ...||+|++||||..
T Consensus       225 ~~nl~l~g~~~~~~~i~~gD~l~~~~-------------~~~fD~Iv~NPPf~~  265 (445)
T 2okc_A          225 SMNLYLHGIGTDRSPIVCEDSLEKEP-------------STLVDVILANPPFGT  265 (445)
T ss_dssp             HHHHHHTTCCSSCCSEEECCTTTSCC-------------SSCEEEEEECCCSSC
T ss_pred             HHHHHHhCCCcCCCCEeeCCCCCCcc-------------cCCcCEEEECCCCCC
Confidence            9886532  2  67899999987653             147999999999964

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.28  E-value=1.3e-11  Score=111.85  Aligned_cols=101  Identities=14%  Similarity=0.152  Sum_probs=77.7

Q ss_pred             CCcccCccccCCHHHHHHHHHHh----cCCCCCEEEEEcCCccHHHHHHHHcC-------CEEEEEeCCHHHHHHHHHHh
Q 023482          115 PRKSLGQHYMLNSEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERF  183 (281)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~l~~~l----~~~~~~~VLDiGcG~G~~t~~la~~~-------~~v~gvD~s~~~l~~a~~~~  183 (281)
                      .....|+ +++++.+...+...+    ...++.+|||+|||+|.++..+++..       .+++|+|+++.+++.|+.+.
T Consensus       101 ~~~~~g~-~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~  179 (344)
T 2f8l_A          101 HGIQVNH-QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGA  179 (344)
T ss_dssp             SSCCGGG-CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHH
T ss_pred             cccccCc-CCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHH
Confidence            3344566 668887766544433    34466799999999999999998762       68999999999999999987


Q ss_pred             cCCC-CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          184 ASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       184 ~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      ...+ ++.++++|+....             ....||+|++||||+.
T Consensus       180 ~~~g~~~~i~~~D~l~~~-------------~~~~fD~Ii~NPPfg~  213 (344)
T 2f8l_A          180 DLQRQKMTLLHQDGLANL-------------LVDPVDVVISDLPVGY  213 (344)
T ss_dssp             HHHTCCCEEEESCTTSCC-------------CCCCEEEEEEECCCSE
T ss_pred             HhCCCCceEEECCCCCcc-------------ccCCccEEEECCCCCC
Confidence            5433 7899999987632             2367999999999754

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.28  E-value=1.6e-11  Score=106.49  Aligned_cols=88  Identities=16%  Similarity=0.217  Sum_probs=72.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      ++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++..   +++++++|+.++++             .+.||+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~d~~~~~~-------------~~~fD~  113 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP---DAVLHHGDMRDFSL-------------GRRFSA  113 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT---TSEEEECCTTTCCC-------------SCCEEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCEEEECChHHCCc-------------cCCcCE
Confidence            56799999999999999999998899999999999999999865   89999999999764             268999


Q ss_pred             EEEcC-CCccc---H------HHHHHhccCCCCc
Q 023482          221 VVANI-PFNIS---T------DVIKQLLPMGDIF  244 (281)
Q Consensus       221 Vi~n~-P~~~~---~------~~~~~ll~~~~~~  244 (281)
                      |+++. .++..   .      ..+.++++++|.+
T Consensus       114 v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l  147 (263)
T 3pfg_A          114 VTCMFSSIGHLAGQAELDAALERFAAHVLPDGVV  147 (263)
T ss_dssp             EEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             EEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEE
Confidence            99986 55443   1      2234667777655

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.27  E-value=1.3e-11  Score=113.34  Aligned_cols=102  Identities=19%  Similarity=0.263  Sum_probs=79.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~  204 (281)
                      +.+.+.......++.+|||||||+|.++..+++.++ +|+|+|++ .+++.|+++...++   +++++++|+.+++++  
T Consensus        51 ~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--  127 (376)
T 3r0q_C           51 YFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP--  127 (376)
T ss_dssp             HHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS--
T ss_pred             HHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC--
Confidence            344455555667889999999999999999999977 99999999 99999999887553   699999999988642  


Q ss_pred             hhhHHHhhcCCCCccEEEEcC-CCcc-----cHHH---HHHhccCCCCc
Q 023482          205 MLSLFERRKSSSGFAKVVANI-PFNI-----STDV---IKQLLPMGDIF  244 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~-P~~~-----~~~~---~~~ll~~~~~~  244 (281)
                                 +.||+|++++ +|..     ...+   +.++++++|.+
T Consensus       128 -----------~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~l  165 (376)
T 3r0q_C          128 -----------EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVM  165 (376)
T ss_dssp             -----------SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEE
T ss_pred             -----------CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEE
Confidence                       6799999976 3332     1122   24778888766

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.27  E-value=4.2e-12  Score=110.14  Aligned_cols=96  Identities=16%  Similarity=0.186  Sum_probs=74.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++.+|||||||+|..++.++..  +.+|+++|+++.+++.|+++....+  +++++++|+.+++..+         ...
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~---------~~~  149 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA---------GHR  149 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST---------TTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc---------ccC
Confidence            46789999999999999999986  6799999999999999999887543  7999999999876421         113


Q ss_pred             CCccEEEEcCCC--cccHHHHHHhccCCCCc
Q 023482          216 SGFAKVVANIPF--NISTDVIKQLLPMGDIF  244 (281)
Q Consensus       216 ~~~d~Vi~n~P~--~~~~~~~~~ll~~~~~~  244 (281)
                      +.||+|+++.--  ......+.++++++|.+
T Consensus       150 ~~fD~I~s~a~~~~~~ll~~~~~~LkpgG~l  180 (249)
T 3g89_A          150 EAYARAVARAVAPLCVLSELLLPFLEVGGAA  180 (249)
T ss_dssp             TCEEEEEEESSCCHHHHHHHHGGGEEEEEEE
T ss_pred             CCceEEEECCcCCHHHHHHHHHHHcCCCeEE
Confidence            679999997432  22223445777887765

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.27  E-value=2.8e-11  Score=106.13  Aligned_cols=107  Identities=21%  Similarity=0.320  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcccc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC  199 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~  199 (281)
                      .+.....++..+.+.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|+++....   ++++++++|+.+.
T Consensus        97 ~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  176 (277)
T 1o54_A           97 YPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG  176 (277)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred             CHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence            3445577888888889999999999999999999987   569999999999999999988654   3799999999875


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCc-ccHHHHHHhccCCCCcc
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~-~~~~~~~~ll~~~~~~~  245 (281)
                       +.            .+.||+|++|+|.. ..-..+.+++++++.+.
T Consensus       177 -~~------------~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~  210 (277)
T 1o54_A          177 -FD------------EKDVDALFLDVPDPWNYIDKCWEALKGGGRFA  210 (277)
T ss_dssp             -CS------------CCSEEEEEECCSCGGGTHHHHHHHEEEEEEEE
T ss_pred             -cc------------CCccCEEEECCcCHHHHHHHHHHHcCCCCEEE
Confidence             22            25799999999875 34455567777777653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.27  E-value=2.6e-11  Score=101.60  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=78.1

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhH
Q 023482          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       130 ~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      ...+++.+. ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|++  ....+++++++|+.++ +.      
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~--~~~~~~~~~~~d~~~~-~~------  104 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR--HGLDNVEFRQQDLFDW-TP------  104 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG--GCCTTEEEEECCTTSC-CC------
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh--cCCCCeEEEecccccC-CC------
Confidence            334455554 5567899999999999999999998999999999999999988  2235899999999887 32      


Q ss_pred             HHhhcCCCCccEEEEcCCCcccH--------HHHHHhccCCCCcceE
Q 023482          209 FERRKSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~~~~  247 (281)
                            .+.||+|+++..++...        ..+.++++++|.+...
T Consensus       105 ------~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~  145 (218)
T 3ou2_A          105 ------DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFV  145 (218)
T ss_dssp             ------SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------CCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence                  36899999976553322        2224777887776444

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.27  E-value=2.7e-11  Score=100.70  Aligned_cols=104  Identities=16%  Similarity=0.180  Sum_probs=78.0

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhH
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      +..++..+.  ++ +|||||||+|.++..+++.+.+|+|+|+++.+++.|+++....+ +++++++|+.++++.      
T Consensus        21 l~~~~~~~~--~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~------   91 (202)
T 2kw5_A           21 LVSVANQIP--QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIV------   91 (202)
T ss_dssp             HHHHHHHSC--SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCC------
T ss_pred             HHHHHHhCC--CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCC------
Confidence            334444443  55 99999999999999999988899999999999999999876443 899999999988743      


Q ss_pred             HHhhcCCCCccEEEEcCCCccc---H---HHHHHhccCCCCcceEE
Q 023482          209 FERRKSSSGFAKVVANIPFNIS---T---DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~~~~---~---~~~~~ll~~~~~~~~~~  248 (281)
                            .+.||+|+++..+...   .   ..+.++++++|.+....
T Consensus        92 ------~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A           92 ------ADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             ------TTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             ------cCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                  2678999987543311   1   22246778887764443

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.27  E-value=1.2e-11  Score=105.54  Aligned_cols=103  Identities=15%  Similarity=0.195  Sum_probs=78.2

Q ss_pred             HHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHH
Q 023482          131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       131 ~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      ..+++.+. ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++...  +++++++|+.+++ .       
T Consensus        31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~--~v~~~~~d~~~~~-~-------  100 (250)
T 2p7i_A           31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD--GITYIHSRFEDAQ-L-------  100 (250)
T ss_dssp             HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS--CEEEEESCGGGCC-C-------
T ss_pred             HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC--CeEEEEccHHHcC-c-------
Confidence            44444443 34667899999999999999999888999999999999999998765  8999999998873 2       


Q ss_pred             HhhcCCCCccEEEEcCCCccc---H---HHHH-HhccCCCCcceEE
Q 023482          210 ERRKSSSGFAKVVANIPFNIS---T---DVIK-QLLPMGDIFSEVV  248 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~---~---~~~~-~ll~~~~~~~~~~  248 (281)
                           .+.||+|+++..++..   .   ..+. ++++++|.+....
T Consensus       101 -----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A          101 -----PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC  141 (250)
T ss_dssp             -----SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -----CCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEc
Confidence                 2679999997554332   1   2335 6777877664433

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.26  E-value=1.5e-11  Score=113.34  Aligned_cols=93  Identities=13%  Similarity=0.218  Sum_probs=79.0

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC----------------------------------------
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG----------------------------------------  163 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~----------------------------------------  163 (281)
                      .....++..|+......++..|||++||+|.+++.++..+                                        
T Consensus       178 pl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  257 (385)
T 3ldu_A          178 PIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK  257 (385)
T ss_dssp             CCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence            3456788888888888888999999999999999987752                                        


Q ss_pred             CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          164 ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       164 ~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      .+|+|+|+|+.+++.|+.+...++   ++++.++|+.+++.             ...||+||+||||..
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-------------~~~~D~Iv~NPPyg~  313 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS-------------EDEFGFIITNPPYGE  313 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-------------SCBSCEEEECCCCCC
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-------------CCCCcEEEECCCCcC
Confidence            469999999999999999987543   79999999998753             257999999999964

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.26  E-value=8.8e-12  Score=113.31  Aligned_cols=94  Identities=16%  Similarity=0.227  Sum_probs=74.3

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhc
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      ...++.+|||||||+|.++..+++.+. +|+|+|++ ++++.|+++...++   +++++++|+.+++++           
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----------  130 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELP-----------  130 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-----------
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCC-----------
Confidence            345788999999999999999999965 99999999 59999999887543   599999999998754           


Q ss_pred             CCCCccEEEEcCCCc-----ccH-HH---HHHhccCCCCc
Q 023482          214 SSSGFAKVVANIPFN-----IST-DV---IKQLLPMGDIF  244 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~-----~~~-~~---~~~ll~~~~~~  244 (281)
                       .++||+|+++++..     ... .+   +.++++++|.+
T Consensus       131 -~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~l  169 (349)
T 3q7e_A          131 -VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLI  169 (349)
T ss_dssp             -SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEE
T ss_pred             -CCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEE
Confidence             36899999986421     112 22   35778888876

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.26  E-value=1.8e-11  Score=105.20  Aligned_cols=97  Identities=16%  Similarity=0.172  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhc--------CCCCeEEEEcCccc-cccccchhhHH
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA--------SIDQLKVLQEDFVK-CHIRSHMLSLF  209 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~--------~~~~v~~~~gD~~~-~~~~d~~~d~v  209 (281)
                      ++.+|||||||+|.++..++..  +.+|+|||+++.|++.|++++.        ...|++++++|+.+ ++..       
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~-------  118 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNF-------  118 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHH-------
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhh-------
Confidence            5678999999999999999987  5699999999999999987753        22489999999987 4400       


Q ss_pred             HhhcCCCCccEEEEcCCCcc--------------cHHHHHHhccCCCCcceE
Q 023482          210 ERRKSSSGFAKVVANIPFNI--------------STDVIKQLLPMGDIFSEV  247 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~--------------~~~~~~~ll~~~~~~~~~  247 (281)
                         ...+.+|.|+.+.|-.+              .-..+.++|++||.+...
T Consensus       119 ---~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          119 ---FYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             ---CCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---CCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence               12367899998755322              123345788888876433

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.26  E-value=9.1e-12  Score=106.97  Aligned_cols=95  Identities=9%  Similarity=0.134  Sum_probs=72.8

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++.+|||||||+|..+..++..  +.+|+|+|+++.+++.|+++....  .+++++++|+.++++..         ...
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---------~~~  139 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRK---------DVR  139 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCT---------TTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccc---------ccc
Confidence            46789999999999999999963  679999999999999999987644  37999999998876420         113


Q ss_pred             CCccEEEEcCCCcccHHHH---HHhccCCCCc
Q 023482          216 SGFAKVVANIPFNISTDVI---KQLLPMGDIF  244 (281)
Q Consensus       216 ~~~d~Vi~n~P~~~~~~~~---~~ll~~~~~~  244 (281)
                      +.||+|+++.. .....++   .++++++|.+
T Consensus       140 ~~fD~V~~~~~-~~~~~~l~~~~~~LkpgG~l  170 (240)
T 1xdz_A          140 ESYDIVTARAV-ARLSVLSELCLPLVKKNGLF  170 (240)
T ss_dssp             TCEEEEEEECC-SCHHHHHHHHGGGEEEEEEE
T ss_pred             CCccEEEEecc-CCHHHHHHHHHHhcCCCCEE
Confidence            67999998763 2223333   4677787766

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.26  E-value=1.7e-11  Score=110.50  Aligned_cols=103  Identities=17%  Similarity=0.327  Sum_probs=78.8

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~  204 (281)
                      +.+.+.+.+...++.+|||||||+|.++..+++.++ +|+|+|++ ++++.|+++...+   ++++++++|+.+++++  
T Consensus        26 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--  102 (328)
T 1g6q_1           26 YRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLP--  102 (328)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--
T ss_pred             HHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCC--
Confidence            344454555555788999999999999999999865 99999999 6999999987654   3799999999988643  


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCcc------cHHHH---HHhccCCCCc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNI------STDVI---KQLLPMGDIF  244 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~------~~~~~---~~ll~~~~~~  244 (281)
                                .+.||+|+++++...      ...++   .++++++|.+
T Consensus       103 ----------~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  141 (328)
T 1g6q_1          103 ----------FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI  141 (328)
T ss_dssp             ----------SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEE
T ss_pred             ----------CCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEE
Confidence                      267999999876321      12333   3788888766

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.25  E-value=8.3e-11  Score=107.77  Aligned_cols=118  Identities=12%  Similarity=0.161  Sum_probs=88.5

Q ss_pred             CCCcccCccccCCHHHHHHHHHHh--cCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC--
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--  187 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~--  187 (281)
                      .+...|.+.+.+.+.....++...  ...++.+|||+| |+|.++..++..+  .+|+|+|+++.+++.|+++.+..+  
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~  221 (373)
T 2qm3_A          143 EPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE  221 (373)
T ss_dssp             CCCGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred             ccchhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            445567776667666666655432  233578999999 9999999999874  599999999999999999987544  


Q ss_pred             CeEEEEcCccc-cccccchhhHHHhhcCCCCccEEEEcCCCcccH-----HHHHHhccCCCC
Q 023482          188 QLKVLQEDFVK-CHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-----DVIKQLLPMGDI  243 (281)
Q Consensus       188 ~v~~~~gD~~~-~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-----~~~~~ll~~~~~  243 (281)
                      +++++++|+.+ ++..           ..+.||+|++|+||....     ....++++++|.
T Consensus       222 ~v~~~~~D~~~~l~~~-----------~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~  272 (373)
T 2qm3_A          222 DIEIFTFDLRKPLPDY-----------ALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRC  272 (373)
T ss_dssp             CEEEECCCTTSCCCTT-----------TSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTC
T ss_pred             CEEEEEChhhhhchhh-----------ccCCccEEEECCCCchHHHHHHHHHHHHHcccCCe
Confidence            89999999988 5421           125799999999996532     223467788774

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.25  E-value=1.4e-11  Score=103.22  Aligned_cols=99  Identities=20%  Similarity=0.238  Sum_probs=76.6

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhH
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      ....++..+  .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++.    +++++.+|+.+++ .      
T Consensus        33 ~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~d~~~~~-~------   99 (211)
T 3e23_A           33 TLTKFLGEL--PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL----GRPVRTMLFHQLD-A------   99 (211)
T ss_dssp             HHHHHHTTS--CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----TSCCEECCGGGCC-C------
T ss_pred             HHHHHHHhc--CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc----CCceEEeeeccCC-C------
Confidence            344444443  36789999999999999999999889999999999999999887    5778999998876 2      


Q ss_pred             HHhhcCCCCccEEEEcCCCcccH--------HHHHHhccCCCCcce
Q 023482          209 FERRKSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIFSE  246 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~~~  246 (281)
                            .+.||+|+++..++...        ..+.++++++|.+..
T Consensus       100 ------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~  139 (211)
T 3e23_A          100 ------IDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA  139 (211)
T ss_dssp             ------CSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ------CCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence                  26899999987664432        233477777776543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.25  E-value=3e-11  Score=100.78  Aligned_cols=97  Identities=16%  Similarity=0.151  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEcCCccHHH-HHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          139 VQEGDIVLEIGPGTGSLT-NVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t-~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ..++.+|||+|||+|..+ ..++..+.+|+|+|+++.+++.|+++.... .+++++++|+.+++++            .+
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~------------~~   88 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFK------------DE   88 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSC------------TT
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCC------------CC
Confidence            446789999999999984 455556889999999999999999887543 4799999999988753            36


Q ss_pred             CccEEEEcCCCccc--H------HHHHHhccCCCCcceE
Q 023482          217 GFAKVVANIPFNIS--T------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~--~------~~~~~ll~~~~~~~~~  247 (281)
                      .||+|+++..++..  .      ..+.++++++|.+-..
T Consensus        89 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  127 (209)
T 2p8j_A           89 SMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACIN  127 (209)
T ss_dssp             CEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            79999997554332  1      2234777787766433

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.25  E-value=1e-11  Score=106.74  Aligned_cols=108  Identities=15%  Similarity=0.195  Sum_probs=79.7

Q ss_pred             ccCC-HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcC
Q 023482          123 YMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFASIDQLKVLQED  195 (281)
Q Consensus       123 ~~~~-~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~------~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD  195 (281)
                      .... +.....+.+.+...++.+|||||||+|+++..+++.      +++|+|||+++.+++.|+. .  .++++++++|
T Consensus        62 ~~~~~p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~--~~~v~~~~gD  138 (236)
T 2bm8_A           62 RMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D--MENITLHQGD  138 (236)
T ss_dssp             ECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G--CTTEEEEECC
T ss_pred             cccCCHHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c--CCceEEEECc
Confidence            3344 777776666665556789999999999999999986      6799999999999988872 2  2589999999


Q ss_pred             cccc---ccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHH---H-hccCCCCc
Q 023482          196 FVKC---HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---Q-LLPMGDIF  244 (281)
Q Consensus       196 ~~~~---~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~---~-ll~~~~~~  244 (281)
                      +.+.   +.           .....||+|+.+........++.   + ++++||.+
T Consensus       139 ~~~~~~l~~-----------~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~l  183 (236)
T 2bm8_A          139 CSDLTTFEH-----------LREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYF  183 (236)
T ss_dssp             SSCSGGGGG-----------GSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEE
T ss_pred             chhHHHHHh-----------hccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEE
Confidence            9885   32           12236999998765333333433   3 88888865

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.25  E-value=3.8e-11  Score=98.51  Aligned_cols=91  Identities=19%  Similarity=0.307  Sum_probs=72.0

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      +.++.+|||+|||+|.++..++..+.+++|+|+++.+++.++++..   +++++++|+.++++.            .+.|
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~---~~~~~~~d~~~~~~~------------~~~~  108 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP---EARWVVGDLSVDQIS------------ETDF  108 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT---TSEEEECCTTTSCCC------------CCCE
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC---CCcEEEcccccCCCC------------CCce
Confidence            3477899999999999999999998899999999999999998875   689999999987643            3679


Q ss_pred             cEEEEcCC-Cccc-----HHH---HHHhccCCCCc
Q 023482          219 AKVVANIP-FNIS-----TDV---IKQLLPMGDIF  244 (281)
Q Consensus       219 d~Vi~n~P-~~~~-----~~~---~~~ll~~~~~~  244 (281)
                      |+|+++++ ++..     ..+   +.++++++|.+
T Consensus       109 D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l  143 (195)
T 3cgg_A          109 DLIVSAGNVMGFLAEDGREPALANIHRALGADGRA  143 (195)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             eEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEE
Confidence            99999844 3222     222   24666766654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.25  E-value=1.5e-11  Score=103.53  Aligned_cols=105  Identities=17%  Similarity=0.264  Sum_probs=77.9

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHH
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      ...++..+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++    .++.++.+|+.++.....     
T Consensus        41 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~-----  111 (227)
T 3e8s_A           41 DQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA----GAGEVHLASYAQLAEAKV-----  111 (227)
T ss_dssp             HHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT----CSSCEEECCHHHHHTTCS-----
T ss_pred             cHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh----cccccchhhHHhhccccc-----
Confidence            34455555555678999999999999999999988999999999999999987    477899999887621100     


Q ss_pred             HhhcCCCCccEEEEcCCCccc--H---HHHHHhccCCCCcce
Q 023482          210 ERRKSSSGFAKVVANIPFNIS--T---DVIKQLLPMGDIFSE  246 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~--~---~~~~~ll~~~~~~~~  246 (281)
                         .....||+|+++..++..  .   ..+.++++++|.+..
T Consensus       112 ---~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~  150 (227)
T 3e8s_A          112 ---PVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVI  150 (227)
T ss_dssp             ---CCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEE
T ss_pred             ---ccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEE
Confidence               223459999998766521  1   334577777776533

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.25  E-value=2.2e-11  Score=108.49  Aligned_cols=95  Identities=11%  Similarity=0.318  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCcccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d  203 (281)
                      +.+.+.+++.+.+.++.+|||+|||+|..+..+++.  +.+|+|+|+|+.+++.|++++..+ ++++++++|+.+++.. 
T Consensus        12 pvLl~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~-   90 (301)
T 1m6y_A           12 PVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL-   90 (301)
T ss_dssp             CTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH-
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHH-
Confidence            346677888888888899999999999999999987  479999999999999999998765 4899999999887521 


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                           +.. .....||.|+.++|+.
T Consensus        91 -----l~~-~g~~~~D~Vl~D~gvS  109 (301)
T 1m6y_A           91 -----LKT-LGIEKVDGILMDLGVS  109 (301)
T ss_dssp             -----HHH-TTCSCEEEEEEECSCC
T ss_pred             -----HHh-cCCCCCCEEEEcCccc
Confidence                 000 1115799999999975

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.25  E-value=1.9e-11  Score=118.02  Aligned_cols=118  Identities=14%  Similarity=0.150  Sum_probs=84.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      .+.+|||||||.|.++..||+.|++|+|||+++.+++.|+.+....+  ++++.++|++++.-.          ...+.|
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~----------~~~~~f  135 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA----------LEEGEF  135 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH----------CCTTSC
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh----------ccCCCc
Confidence            56799999999999999999999999999999999999999887654  799999999887321          234689


Q ss_pred             cEEEEcCCCcccH---------HHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchh
Q 023482          219 AKVVANIPFNIST---------DVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPI  272 (281)
Q Consensus       219 d~Vi~n~P~~~~~---------~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~  272 (281)
                      |+|++.-.++...         .++..+-+.+..  .+..+.-.|+..++.  +.|+.+|..|
T Consensus       136 D~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~--~~~~~~~~e~~~~~~--p~~~~~~~~~  194 (569)
T 4azs_A          136 DLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQA--VILELAVKEEPFYWG--VSQPDDPREL  194 (569)
T ss_dssp             SEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSE--EEEECCCTTSSSGGG--GGSCSSGGGG
T ss_pred             cEEEECcchhcCCCHHHHHHHHHHHHHhccccce--eeEEecccccccccc--CCCCccHHHh
Confidence            9999876554332         222233333322  233344556666665  4566666655

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.24  E-value=2.9e-11  Score=115.79  Aligned_cols=105  Identities=15%  Similarity=0.181  Sum_probs=83.8

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhc----CCCCCEEEEEcCCccHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHhc
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAA----VQEGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~----~~~~~~VLDiGcG~G~~t~~la~~-----~~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      ...+..|+ |++++.+++.|++.+.    ..++.+|+|.+||+|.+...+++.     ..+++|+|+++.++..|+.++.
T Consensus       191 ~~~k~~G~-fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~  269 (542)
T 3lkd_A          191 DSGKKAGE-FYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMI  269 (542)
T ss_dssp             C---CCSS-CCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             HhcccCCe-ecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHH
Confidence            45556777 9999999999999987    456789999999999999888775     4589999999999999998864


Q ss_pred             CC----CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          185 SI----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       185 ~~----~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      -.    +++.+.++|....+++.         .....||+|++||||.
T Consensus       270 l~gi~~~~~~I~~gDtL~~d~p~---------~~~~~fD~IvaNPPf~  308 (542)
T 3lkd_A          270 LHGVPIENQFLHNADTLDEDWPT---------QEPTNFDGVLMNPPYS  308 (542)
T ss_dssp             HTTCCGGGEEEEESCTTTSCSCC---------SSCCCBSEEEECCCTT
T ss_pred             HcCCCcCccceEecceecccccc---------cccccccEEEecCCcC
Confidence            32    26789999998763221         2246899999999996

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.24  E-value=2.6e-12  Score=110.92  Aligned_cols=116  Identities=11%  Similarity=0.100  Sum_probs=86.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~  196 (281)
                      +...+.....+...+...++.+|||||||+|+.+..+++.   +++|+++|+++.+++.|++++...   ++++++++|+
T Consensus        42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  121 (242)
T 3r3h_A           42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA  121 (242)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            4566766666666666667889999999999999999985   579999999999999999998754   3899999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHH---HHhccCCCCc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIF  244 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~---~~ll~~~~~~  244 (281)
                      .+....     +... ...+.||+|+.+.+.......+   .+++++||.+
T Consensus       122 ~~~l~~-----~~~~-~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~l  166 (242)
T 3r3h_A          122 LDTLHS-----LLNE-GGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLI  166 (242)
T ss_dssp             HHHHHH-----HHHH-HCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHH-----Hhhc-cCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEE
Confidence            775211     0000 0136899999988754444333   4677777765

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.24  E-value=8.6e-12  Score=100.92  Aligned_cols=96  Identities=15%  Similarity=0.201  Sum_probs=75.2

Q ss_pred             HHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      +++.+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++   .++++++.+|   .++           
T Consensus         9 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~v~~~~~d---~~~-----------   71 (170)
T 3i9f_A            9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK---FDSVITLSDP---KEI-----------   71 (170)
T ss_dssp             THHHHHSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH---CTTSEEESSG---GGS-----------
T ss_pred             HHHhcCcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh---CCCcEEEeCC---CCC-----------
Confidence            44555667788999999999999999999866999999999999999988   3489999999   333           


Q ss_pred             cCCCCccEEEEcCCCcccH------HHHHHhccCCCCcce
Q 023482          213 KSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSE  246 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~  246 (281)
                       ..+.||+|+++..++...      ..+.++++++|.+..
T Consensus        72 -~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~  110 (170)
T 3i9f_A           72 -PDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVII  110 (170)
T ss_dssp             -CTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             -CCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEE
Confidence             236899999987665431      334577777776543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.24  E-value=2.9e-11  Score=103.19  Aligned_cols=102  Identities=16%  Similarity=0.094  Sum_probs=76.1

Q ss_pred             HhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      .+.+.++.+|||+|||+|.++..+++.   +.+|+|+|+++.+++.+.++.....+++++++|+.+.....         
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~---------  142 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYR---------  142 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGG---------
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhc---------
Confidence            345667889999999999999999987   36999999999988877776665578999999998742100         


Q ss_pred             cCCCCccEEEEcCCCcccH----HHHHHhccCCCCcce
Q 023482          213 KSSSGFAKVVANIPFNIST----DVIKQLLPMGDIFSE  246 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~~----~~~~~ll~~~~~~~~  246 (281)
                      ...+.||+|++++|.....    ..+.++++++|.+-.
T Consensus       143 ~~~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i  180 (233)
T 2ipx_A          143 MLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVI  180 (233)
T ss_dssp             GGCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccCCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEE
Confidence            1236899999998843222    224577888876643

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.24  E-value=1.7e-11  Score=104.09  Aligned_cols=114  Identities=21%  Similarity=0.204  Sum_probs=85.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~  196 (281)
                      +...+.....+...+...++.+|||||||+|.++..+++.   +.+|+++|+++.+++.|++++...   .+++++++|+
T Consensus        51 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  130 (229)
T 2avd_A           51 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  130 (229)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH
Confidence            5566666666666566667889999999999999999986   579999999999999999988654   3899999998


Q ss_pred             cccccccchhhHHHhhcCC--CCccEEEEcCCCcccHHHH---HHhccCCCCc
Q 023482          197 VKCHIRSHMLSLFERRKSS--SGFAKVVANIPFNISTDVI---KQLLPMGDIF  244 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~--~~~d~Vi~n~P~~~~~~~~---~~ll~~~~~~  244 (281)
                      .+....     +.   ...  +.||+|+.+++.......+   .++++++|.+
T Consensus       131 ~~~~~~-----~~---~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~l  175 (229)
T 2avd_A          131 LETLDE-----LL---AAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGIL  175 (229)
T ss_dssp             HHHHHH-----HH---HTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHH-----HH---hcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEE
Confidence            764110     00   111  5799999998865444333   4667777754

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.23  E-value=3.6e-11  Score=101.82  Aligned_cols=95  Identities=21%  Similarity=0.258  Sum_probs=76.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-------CeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-------QLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-------~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      ++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|+++....+       +++++.+|+.++++.           
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----------   98 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFH-----------   98 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSC-----------
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCC-----------
Confidence            67899999999999999999998899999999999999999887543       589999999988753           


Q ss_pred             CCCCccEEEEcCCCcccH---------HHHHHhccCCCCcceE
Q 023482          214 SSSGFAKVVANIPFNIST---------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~~~~---------~~~~~ll~~~~~~~~~  247 (281)
                       .+.||+|+++..++...         ..+.++++++|.+-..
T Consensus        99 -~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (235)
T 3sm3_A           99 -DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLV  140 (235)
T ss_dssp             -TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence             36799999986654332         2234777887766433

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.23  E-value=5.4e-11  Score=101.99  Aligned_cols=122  Identities=13%  Similarity=0.109  Sum_probs=86.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~  196 (281)
                      ....+.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...+   +++++++|+
T Consensus        42 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~  121 (239)
T 2hnk_A           42 MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA  121 (239)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence            3567777777777776667889999999999999999987   5799999999999999999986543   599999998


Q ss_pred             cccccccch----hhHHHhhcC-C-CCccEEEEcCCCcccH---HHHHHhccCCCCcc
Q 023482          197 VKCHIRSHM----LSLFERRKS-S-SGFAKVVANIPFNIST---DVIKQLLPMGDIFS  245 (281)
Q Consensus       197 ~~~~~~d~~----~d~v~~~~~-~-~~~d~Vi~n~P~~~~~---~~~~~ll~~~~~~~  245 (281)
                      .+.......    -.|... .. . +.||+|+.+.......   ..+.++++++|.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~-f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv  178 (239)
T 2hnk_A          122 LETLQVLIDSKSAPSWASD-FAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLI  178 (239)
T ss_dssp             HHHHHHHHHCSSCCGGGTT-TCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEE
T ss_pred             HHHHHHHHhhccccccccc-ccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            763110000    000000 01 2 6799999986654444   33446777777653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.23  E-value=1.3e-11  Score=113.84  Aligned_cols=92  Identities=21%  Similarity=0.300  Sum_probs=69.8

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIR  202 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~  202 (281)
                      +.++.....++..+ ..++.+|||+|||+|.++..++..+++|+++|+|+.+++.|++++..++ ..++.++|+.+....
T Consensus       198 f~dqr~~r~~l~~~-~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~  276 (393)
T 4dmg_A          198 YLDQRENRRLFEAM-VRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRG  276 (393)
T ss_dssp             CGGGHHHHHHHHTT-CCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHT
T ss_pred             CCCHHHHHHHHHHH-hcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHH
Confidence            33444444444433 2358899999999999999999998889999999999999999987554 346778998774210


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCC
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPF  227 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~  227 (281)
                                . .+.||+|+.|||+
T Consensus       277 ----------~-~~~fD~Ii~dpP~  290 (393)
T 4dmg_A          277 ----------L-EGPFHHVLLDPPT  290 (393)
T ss_dssp             ----------C-CCCEEEEEECCCC
T ss_pred             ----------h-cCCCCEEEECCCc
Confidence                      1 2349999999998

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.23  E-value=1.2e-11  Score=113.36  Aligned_cols=93  Identities=25%  Similarity=0.319  Sum_probs=72.5

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhc
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      ...++++|||||||+|.+++.+|+.|+ +|+|||.++ +++.|++++..++   +|+++++|+.++.++           
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-----------  147 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-----------  147 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-----------
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-----------
Confidence            334788999999999999999998876 899999995 8899998887653   799999999998643           


Q ss_pred             CCCCccEEEEcC-----CCcccH-HH---HHHhccCCCCc
Q 023482          214 SSSGFAKVVANI-----PFNIST-DV---IKQLLPMGDIF  244 (281)
Q Consensus       214 ~~~~~d~Vi~n~-----P~~~~~-~~---~~~ll~~~~~~  244 (281)
                        .++|+||+..     .+.... .+   ..++|+++|.+
T Consensus       148 --e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~  185 (376)
T 4hc4_A          148 --EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLL  185 (376)
T ss_dssp             --SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEE
T ss_pred             --ccccEEEeecccccccccchhhhHHHHHHhhCCCCceE
Confidence              6799999853     222222 22   24888888765

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.23  E-value=1.3e-11  Score=111.91  Aligned_cols=88  Identities=17%  Similarity=0.224  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~  204 (281)
                      .....+++.+...++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.|+++...++ +++++.+|+.+.+    
T Consensus       183 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~----  258 (343)
T 2pjd_A          183 VGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV----  258 (343)
T ss_dssp             HHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC----
T ss_pred             HHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc----
Confidence            356777888866667799999999999999999875  599999999999999999987554 6788999987642    


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                                .+.||+|++|+||+.
T Consensus       259 ----------~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          259 ----------KGRFDMIISNPPFHD  273 (343)
T ss_dssp             ----------CSCEEEEEECCCCCS
T ss_pred             ----------cCCeeEEEECCCccc
Confidence                      267999999999975

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.23  E-value=1.2e-11  Score=103.18  Aligned_cols=102  Identities=15%  Similarity=0.203  Sum_probs=76.1

Q ss_pred             HHHHHHHHhcCC---CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcccccc
Q 023482          129 INDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHI  201 (281)
Q Consensus       129 ~~~~l~~~l~~~---~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~  201 (281)
                      +.+.+++.+...   ++.+|||+|||+|..+..++..  +.+++|+|+++.+++.|+++....+  +++++++|+.+.+.
T Consensus        50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~  129 (207)
T 1jsx_A           50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS  129 (207)
T ss_dssp             HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC
T ss_pred             HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc
Confidence            455555555432   3779999999999999999986  6799999999999999999887543  69999999988641


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcCCCcccHHHHH---HhccCCCCc
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~---~ll~~~~~~  244 (281)
                                   .+.||+|+++.. .....++.   ++++++|.+
T Consensus       130 -------------~~~~D~i~~~~~-~~~~~~l~~~~~~L~~gG~l  161 (207)
T 1jsx_A          130 -------------EPPFDGVISRAF-ASLNDMVSWCHHLPGEQGRF  161 (207)
T ss_dssp             -------------CSCEEEEECSCS-SSHHHHHHHHTTSEEEEEEE
T ss_pred             -------------cCCcCEEEEecc-CCHHHHHHHHHHhcCCCcEE
Confidence                         257999998742 22333443   556666654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.22  E-value=2.2e-11  Score=109.23  Aligned_cols=93  Identities=14%  Similarity=0.239  Sum_probs=76.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~  197 (281)
                      +..+......+...+.+.++.+|||+|||+|..+..+++.   +.+|+|+|+++.+++.+++++...+  +++++++|+.
T Consensus       100 ~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~  179 (315)
T 1ixk_A          100 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL  179 (315)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGG
T ss_pred             EEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChh
Confidence            4444455555667778888999999999999999999985   3699999999999999999987543  8999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCC
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~  227 (281)
                      +++.            ..+.||+|++++|.
T Consensus       180 ~~~~------------~~~~fD~Il~d~Pc  197 (315)
T 1ixk_A          180 HIGE------------LNVEFDKILLDAPC  197 (315)
T ss_dssp             GGGG------------GCCCEEEEEEECCT
T ss_pred             hccc------------ccccCCEEEEeCCC
Confidence            8753            12579999999985

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.22  E-value=2.7e-11  Score=112.97  Aligned_cols=97  Identities=18%  Similarity=0.269  Sum_probs=74.1

Q ss_pred             CCHHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccc
Q 023482          125 LNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIR  202 (281)
Q Consensus       125 ~~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~  202 (281)
                      .++...+.+...+. ..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...++ +++++++|+.++.. 
T Consensus       273 ~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-  351 (425)
T 2jjq_A          273 TNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-  351 (425)
T ss_dssp             SBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-
T ss_pred             cCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-
Confidence            34444443333321 4567899999999999999999988899999999999999999886433 39999999988641 


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCcccH-HHHH
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFNIST-DVIK  235 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-~~~~  235 (281)
                                   ..||+|+.|||+.... .++.
T Consensus       352 -------------~~fD~Vv~dPPr~g~~~~~~~  372 (425)
T 2jjq_A          352 -------------KGFDTVIVDPPRAGLHPRLVK  372 (425)
T ss_dssp             -------------TTCSEEEECCCTTCSCHHHHH
T ss_pred             -------------cCCCEEEEcCCccchHHHHHH
Confidence                         2799999999985433 2444

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.22  E-value=5.7e-11  Score=101.25  Aligned_cols=105  Identities=20%  Similarity=0.259  Sum_probs=80.6

Q ss_pred             HHHHHHHHHhcCC--CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccc
Q 023482          128 EINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       128 ~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~  204 (281)
                      .+.+.+.+.+...  ++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++....+ +++++++|+.++++.  
T Consensus        22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~--   99 (246)
T 1y8c_A           22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN--   99 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS--
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc--
Confidence            3445555555433  67899999999999999999998899999999999999999887555 899999999987642  


Q ss_pred             hhhHHHhhcCCCCccEEEEcC-CCccc---H---HH---HHHhccCCCCcc
Q 023482          205 MLSLFERRKSSSGFAKVVANI-PFNIS---T---DV---IKQLLPMGDIFS  245 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~-P~~~~---~---~~---~~~ll~~~~~~~  245 (281)
                                 +.||+|+++. .++..   .   .+   +.++++++|.+-
T Consensus       100 -----------~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~  139 (246)
T 1y8c_A          100 -----------RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI  139 (246)
T ss_dssp             -----------CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             -----------CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEE
Confidence                       6799999987 55443   2   22   236667776653

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.22  E-value=2.8e-11  Score=109.92  Aligned_cols=103  Identities=17%  Similarity=0.209  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d  203 (281)
                      .+.+.+++.+...++.+|||||||+|.++..+++.+. +|+|+|+++ +++.|+++.+.+   ++++++++|+.+++++ 
T Consensus        37 ~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-  114 (348)
T 2y1w_A           37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-  114 (348)
T ss_dssp             HHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-
T ss_pred             HHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-
Confidence            3556677777777889999999999999999999865 999999996 889998887644   4899999999987532 


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCc-cc----HHHH---HHhccCCCCc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFN-IS----TDVI---KQLLPMGDIF  244 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~-~~----~~~~---~~ll~~~~~~  244 (281)
                                  ++||+|+++.++. ..    ...+   .++++++|.+
T Consensus       115 ------------~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  151 (348)
T 2y1w_A          115 ------------EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNM  151 (348)
T ss_dssp             ------------SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEE
T ss_pred             ------------CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEE
Confidence                        5799999997643 11    2233   4677777766

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.22  E-value=3.2e-11  Score=103.58  Aligned_cols=117  Identities=11%  Similarity=0.107  Sum_probs=82.3

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~  196 (281)
                      ....+.....+...+...++.+|||||||+|+.+..+++.   +.+|+++|+++.+++.|+++++..+   +++++++|+
T Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  131 (237)
T 3c3y_A           52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA  131 (237)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            3345555555444455556789999999999999999986   6799999999999999999987543   699999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccHHH---HHHhccCCCCc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV---IKQLLPMGDIF  244 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~---~~~ll~~~~~~  244 (281)
                      .+....     +...-...+.||+|+.+.+......+   +.+++++||.+
T Consensus       132 ~~~l~~-----l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~l  177 (237)
T 3c3y_A          132 MLALDN-----LLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIV  177 (237)
T ss_dssp             HHHHHH-----HHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHH-----HHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEE
Confidence            764110     00000013689999998764433333   34677777754

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.22  E-value=8.6e-12  Score=106.54  Aligned_cols=96  Identities=9%  Similarity=0.086  Sum_probs=72.5

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCC-HHHHHHH---HHHhcCC--CCeEEEEcCccccccccchhhHHHh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKD-QHMVGLV---RERFASI--DQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s-~~~l~~a---~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      .++.+|||||||+|.++..+++.  +.+|+|||+| +.|++.|   +++....  .+++++++|+.++|..         
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~---------   93 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE---------   93 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG---------
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhh---------
Confidence            46789999999999999999954  6799999999 7777776   6665443  3899999999998531         


Q ss_pred             hcCCCCccEEEEcCCCccc-----------HHHHHHhccCCCCcce
Q 023482          212 RKSSSGFAKVVANIPFNIS-----------TDVIKQLLPMGDIFSE  246 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~-----------~~~~~~ll~~~~~~~~  246 (281)
                        ..+.+|.|++|+|+...           -..+.+++++||.+..
T Consensus        94 --~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           94 --LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             --GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             --ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence              12567888999886432           1334578888887644

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.22  E-value=5.2e-11  Score=101.52  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccch
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~  205 (281)
                      ..+.+.+...+.  ++.+|||+|||+|.++..+++. .+|+|+|+++.+++.|+++.... .+++++++|+.++++.   
T Consensus        21 ~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~---   94 (243)
T 3d2l_A           21 PEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP---   94 (243)
T ss_dssp             HHHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS---
T ss_pred             HHHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC---
Confidence            345666666655  4689999999999999999988 89999999999999999987644 3899999999887632   


Q ss_pred             hhHHHhhcCCCCccEEEEcC-CCccc---H------HHHHHhccCCCCcc
Q 023482          206 LSLFERRKSSSGFAKVVANI-PFNIS---T------DVIKQLLPMGDIFS  245 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~-P~~~~---~------~~~~~ll~~~~~~~  245 (281)
                                +.||+|+++. .++..   .      ..+.++++++|.+-
T Consensus        95 ----------~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~  134 (243)
T 3d2l_A           95 ----------EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL  134 (243)
T ss_dssp             ----------SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEE
Confidence                      6799999864 33322   1      22346777777653

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.22  E-value=5.3e-11  Score=104.57  Aligned_cols=97  Identities=21%  Similarity=0.275  Sum_probs=76.2

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcC
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      +.++.+|||||||+|.++..++..+. +|+|+|+++.+++.|+++....+   +++++++|+.+.++.           .
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----------~  130 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-----------L  130 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-----------C
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-----------C
Confidence            45778999999999999999988865 99999999999999999987653   699999999988751           2


Q ss_pred             CCCccEEEEcCCCcc----cH------HHHHHhccCCCCcce
Q 023482          215 SSGFAKVVANIPFNI----ST------DVIKQLLPMGDIFSE  246 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~----~~------~~~~~ll~~~~~~~~  246 (281)
                      .+.||+|+++..++.    ..      ..+.++++++|.+..
T Consensus       131 ~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  172 (298)
T 1ri5_A          131 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM  172 (298)
T ss_dssp             SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            368999999865543    11      223467788777643

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.21  E-value=1e-11  Score=109.07  Aligned_cols=93  Identities=16%  Similarity=0.220  Sum_probs=73.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRS  203 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d  203 (281)
                      ....+...+.+.++.+|||+|||+|..+..+++.  + .+|+|+|+++.+++.++++....+  +++++++|+.+++...
T Consensus        71 ~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~  150 (274)
T 3ajd_A           71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYL  150 (274)
T ss_dssp             GGGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhh
Confidence            3344555667788999999999999999999984  4 699999999999999999987654  8999999998764210


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                           .   ...+.||+|++++|+..
T Consensus       151 -----~---~~~~~fD~Vl~d~Pcs~  168 (274)
T 3ajd_A          151 -----L---KNEIFFDKILLDAPCSG  168 (274)
T ss_dssp             -----H---HTTCCEEEEEEEECCC-
T ss_pred             -----h---hccccCCEEEEcCCCCC
Confidence                 0   12468999999999853

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.21  E-value=8.5e-11  Score=100.58  Aligned_cols=102  Identities=12%  Similarity=0.207  Sum_probs=76.1

Q ss_pred             HHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc--ccccch
Q 023482          129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC--HIRSHM  205 (281)
Q Consensus       129 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~--~~~d~~  205 (281)
                      +...+...+. +.++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++      ++++.+|+.+.  ++    
T Consensus        28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~d~~~~~~~~----   97 (240)
T 3dli_A           28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK------FNVVKSDAIEYLKSL----   97 (240)
T ss_dssp             HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT------SEEECSCHHHHHHTS----
T ss_pred             HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh------cceeeccHHHHhhhc----
Confidence            3334433333 34668999999999999999999988999999999999999875      78999998875  43    


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCccc-----H---HHHHHhccCCCCcceEE
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNIS-----T---DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~~-----~---~~~~~ll~~~~~~~~~~  248 (281)
                              ..+.||+|+++..++..     .   ..+.++++++|.+....
T Consensus        98 --------~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (240)
T 3dli_A           98 --------PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES  140 (240)
T ss_dssp             --------CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred             --------CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEe
Confidence                    23789999997554322     2   23357889998875443

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.21  E-value=1.4e-11  Score=103.95  Aligned_cols=101  Identities=17%  Similarity=0.163  Sum_probs=72.8

Q ss_pred             HHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHh----cCC--CCeEEEEcCcccccccc
Q 023482          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERF----ASI--DQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~----~~~--~~v~~~~gD~~~~~~~d  203 (281)
                      ..++.+.+.++.+|||+|||+|.++..+++.  +.+|+|+|+++.|++.+.++.    ...  .+++++++|+.++++.+
T Consensus        18 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~   97 (218)
T 3mq2_A           18 AEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS   97 (218)
T ss_dssp             HHHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC
T ss_pred             HHHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC
Confidence            3445556668889999999999999999998  679999999999888643322    222  38999999999988643


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCccc-----------HHHHHHhccCCCCcc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNIS-----------TDVIKQLLPMGDIFS  245 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~~-----------~~~~~~ll~~~~~~~  245 (281)
                                  +. |.|+...++...           -..+.++++++|.+.
T Consensus        98 ------------~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  137 (218)
T 3mq2_A           98 ------------GV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFL  137 (218)
T ss_dssp             ------------CE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEE
T ss_pred             ------------CC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEE
Confidence                        33 666655554322           133457778877653

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.21  E-value=2.6e-11  Score=111.62  Aligned_cols=97  Identities=11%  Similarity=0.122  Sum_probs=74.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~  197 (281)
                      |+.++.....++...- .++.+|||+|||+|.++..++..++ +|+|+|+|+.+++.|++|...++    +++++++|+.
T Consensus       195 ff~~~~~~~~~~~~~~-~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~  273 (385)
T 2b78_A          195 IFLDQRQVRNELINGS-AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF  273 (385)
T ss_dssp             SCGGGHHHHHHHHHTT-TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH
T ss_pred             cCCcHHHHHHHHHHHh-cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHH
Confidence            3455555555555442 4678999999999999999999765 99999999999999999987553    7999999997


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +....     +.   .....||+|+.|||+.
T Consensus       274 ~~l~~-----~~---~~~~~fD~Ii~DPP~~  296 (385)
T 2b78_A          274 DYFKY-----AR---RHHLTYDIIIIDPPSF  296 (385)
T ss_dssp             HHHHH-----HH---HTTCCEEEEEECCCCC
T ss_pred             HHHHH-----HH---HhCCCccEEEECCCCC
Confidence            73210     00   1245899999999994

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.21  E-value=4.7e-11  Score=102.32  Aligned_cols=102  Identities=11%  Similarity=0.090  Sum_probs=77.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      +.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++.. ..+++++++|+.+++.... +|.      ...|
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~-~~~------~~~~  125 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT-AANISYRLLDGLVPEQAAQ-IHS------EIGD  125 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC-CTTEEEEECCTTCHHHHHH-HHH------HHCS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc-ccCceEEECcccccccccc-ccc------ccCc
Confidence            3567799999999999999999998899999999999999999874 3489999999998764321 111      1358


Q ss_pred             cEEEEcCCCcccH-----HH---HHHhccCCCCcceEE
Q 023482          219 AKVVANIPFNIST-----DV---IKQLLPMGDIFSEVV  248 (281)
Q Consensus       219 d~Vi~n~P~~~~~-----~~---~~~ll~~~~~~~~~~  248 (281)
                      |+|+++..++...     .+   +.++++++|.+....
T Consensus       126 d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          126 ANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             CEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             cEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            9999976554333     22   347788888754333

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.20  E-value=3.4e-11  Score=107.04  Aligned_cols=95  Identities=18%  Similarity=0.125  Sum_probs=75.9

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHH--Hc-CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHh
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLL--NA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la--~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      .+.++.+|||||||+|..+..++  .. +.+|+|+|+++.+++.|+++....+   +++++++|+.++++          
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------  184 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT----------  184 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC----------
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc----------
Confidence            35678899999999999999995  22 6699999999999999999987654   59999999999874          


Q ss_pred             hcCCCCccEEEEcCCCccc--H-------HHHHHhccCCCCcc
Q 023482          212 RKSSSGFAKVVANIPFNIS--T-------DVIKQLLPMGDIFS  245 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~--~-------~~~~~ll~~~~~~~  245 (281)
                        . +.||+|+++.+++..  .       ..+.+++++||.+.
T Consensus       185 --~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  224 (305)
T 3ocj_A          185 --R-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV  224 (305)
T ss_dssp             --C-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             --c-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEE
Confidence              2 689999998876543  1       23346778877653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.20  E-value=5.9e-11  Score=116.95  Aligned_cols=102  Identities=11%  Similarity=0.138  Sum_probs=80.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhc--------CCCCeEEEEcCc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFA--------SIDQLKVLQEDF  196 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~--------~~~~v~~~~gD~  196 (281)
                      ...+.+++.+...++.+|||||||+|.++..|++.+   .+|+|||+++.|++.|++++.        ...+++++++|+
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa  787 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI  787 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence            456667777776788999999999999999999986   799999999999999988553        123899999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccH-H-------HHHHhccCC
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-D-------VIKQLLPMG  241 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-~-------~~~~ll~~~  241 (281)
                      .++++.+            +.||+|+++..+++.. +       .+.+++++|
T Consensus       788 ~dLp~~d------------~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG  828 (950)
T 3htx_A          788 LEFDSRL------------HDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK  828 (950)
T ss_dssp             TSCCTTS------------CSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             HhCCccc------------CCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence            9988543            6799999976654432 2       235777776

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.20  E-value=3.9e-11  Score=110.26  Aligned_cols=99  Identities=20%  Similarity=0.242  Sum_probs=78.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC----------CCeEEEEcCcccc------
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI----------DQLKVLQEDFVKC------  199 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~----------~~v~~~~gD~~~~------  199 (281)
                      ..++.+|||||||+|..+..+++.   +.+|+|+|+++.+++.|++++...          .+++++++|+.++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            447789999999999999999885   459999999999999999886421          4999999999987      


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceEEE
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEVVL  249 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~~~  249 (281)
                      +++            .+.||+|+++..++...      ..+.+++++||.+.....
T Consensus       161 ~~~------------~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          161 GVP------------DSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             CCC------------TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCC------------CCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            543            36899999998776542      334578888887754443

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.19  E-value=8.5e-11  Score=98.35  Aligned_cols=97  Identities=18%  Similarity=0.176  Sum_probs=74.6

Q ss_pred             HHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ++..+.. ++.+|||+|||+|.++..+   +. +++|+|+++.+++.++++.   .+++++++|+.++++.+        
T Consensus        29 ~l~~~~~-~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~~~--------   93 (211)
T 2gs9_A           29 ALKGLLP-PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---PEATWVRAWGEALPFPG--------   93 (211)
T ss_dssp             HHHTTCC-CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC---TTSEEECCCTTSCCSCS--------
T ss_pred             HHHHhcC-CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcccccCCCCC--------
Confidence            3444433 6789999999999999888   66 9999999999999999887   48899999999887543        


Q ss_pred             hcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceEE
Q 023482          212 RKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~~  248 (281)
                          +.||+|+++..++...      ..+.++++++|.+-...
T Consensus        94 ----~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  132 (211)
T 2gs9_A           94 ----ESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGV  132 (211)
T ss_dssp             ----SCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----CcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence                6799999986654432      23357778887764443

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.19  E-value=3.7e-11  Score=108.67  Aligned_cols=89  Identities=16%  Similarity=0.296  Sum_probs=72.8

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++.+|||+|||+|.++.. +..+.+|+|+|+|+.+++.|+++...++   +++++++|+.++.               .
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---------------~  257 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---------------V  257 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------------C
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------------C
Confidence            4778999999999999999 8766799999999999999999987553   7999999998753               5


Q ss_pred             CccEEEEcCCCcccH--HHHHHhccCCCCc
Q 023482          217 GFAKVVANIPFNIST--DVIKQLLPMGDIF  244 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~~--~~~~~ll~~~~~~  244 (281)
                      .||+|+.|||+....  ..+.++++++|.+
T Consensus       258 ~fD~Vi~dpP~~~~~~l~~~~~~L~~gG~l  287 (336)
T 2yx1_A          258 KGNRVIMNLPKFAHKFIDKALDIVEEGGVI  287 (336)
T ss_dssp             CEEEEEECCTTTGGGGHHHHHHHEEEEEEE
T ss_pred             CCcEEEECCcHhHHHHHHHHHHHcCCCCEE
Confidence            799999999976432  3334666776654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.19  E-value=3.5e-11  Score=111.10  Aligned_cols=93  Identities=16%  Similarity=0.168  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC---C-CeEEEEcCccccc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---D-QLKVLQEDFVKCH  200 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~---~-~v~~~~gD~~~~~  200 (281)
                      ++.....++..+  .++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|+++...+   . +++++++|+.+..
T Consensus       207 ~~~~~~~~l~~~--~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~  284 (396)
T 3c0k_A          207 DQRDSRLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL  284 (396)
T ss_dssp             GGHHHHHHHHHH--CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHH
T ss_pred             CHHHHHHHHHHh--hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHH
Confidence            333334444444  467899999999999999999985 49999999999999999998643   2 7999999998753


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      ..     +.   .....||+|+.|||+.
T Consensus       285 ~~-----~~---~~~~~fD~Ii~dpP~~  304 (396)
T 3c0k_A          285 RT-----YR---DRGEKFDVIVMDPPKF  304 (396)
T ss_dssp             HH-----HH---HTTCCEEEEEECCSST
T ss_pred             HH-----HH---hcCCCCCEEEECCCCC
Confidence            11     00   1246899999999983

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.19  E-value=1.7e-10  Score=100.37  Aligned_cols=92  Identities=13%  Similarity=0.231  Sum_probs=74.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++.+|||||||+|.++..+++.  +.+|+|+|+++.+++.|+++..   ++.++.+|+.++++.+            +.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~d~~~~~~~~------------~~  148 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP---QVTFCVASSHRLPFSD------------TS  148 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT---TSEEEECCTTSCSBCT------------TC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC---CcEEEEcchhhCCCCC------------Cc
Confidence            46789999999999999999997  6799999999999999998763   7899999999887543            67


Q ss_pred             ccEEEEcCCCcccHHHHHHhccCCCCcceE
Q 023482          218 FAKVVANIPFNISTDVIKQLLPMGDIFSEV  247 (281)
Q Consensus       218 ~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~  247 (281)
                      ||+|+++..... -..+.++++++|.+...
T Consensus       149 fD~v~~~~~~~~-l~~~~~~L~pgG~l~~~  177 (269)
T 1p91_A          149 MDAIIRIYAPCK-AEELARVVKPGGWVITA  177 (269)
T ss_dssp             EEEEEEESCCCC-HHHHHHHEEEEEEEEEE
T ss_pred             eeEEEEeCChhh-HHHHHHhcCCCcEEEEE
Confidence            899998765443 45556788888776433

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.19  E-value=3.4e-11  Score=111.20  Aligned_cols=97  Identities=24%  Similarity=0.247  Sum_probs=74.3

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~  198 (281)
                      |+.++.....++..+. .++.+|||+|||+|.++..++..++ +|+|+|+++.+++.|+++...++   +++++++|+.+
T Consensus       200 ~f~~~~~~~~~~~~~~-~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~  278 (396)
T 2as0_A          200 FFLDQRENRLALEKWV-QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE  278 (396)
T ss_dssp             CCSTTHHHHHHHGGGC-CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             ccCCHHHHHHHHHHHh-hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHH
Confidence            3444444444444442 3678999999999999999999854 99999999999999999987654   79999999987


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      ....     +.   .....||+|+.|||+.
T Consensus       279 ~~~~-----~~---~~~~~fD~Vi~dpP~~  300 (396)
T 2as0_A          279 EMEK-----LQ---KKGEKFDIVVLDPPAF  300 (396)
T ss_dssp             HHHH-----HH---HTTCCEEEEEECCCCS
T ss_pred             HHHH-----HH---hhCCCCCEEEECCCCC
Confidence            5311     00   1246899999999984

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.18  E-value=9e-11  Score=101.15  Aligned_cols=97  Identities=19%  Similarity=0.191  Sum_probs=72.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcC----------CCCeEEEEcCccc-cccccchh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS----------IDQLKVLQEDFVK-CHIRSHML  206 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~----------~~~v~~~~gD~~~-~~~~d~~~  206 (281)
                      .++.+|||||||+|.++..++..+  .+|+|||+++.+++.|+++...          ..|++++++|+.+ ++..    
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~----  123 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNF----  123 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGT----
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHh----
Confidence            356799999999999999999874  5899999999999999887653          2589999999987 4310    


Q ss_pred             hHHHhhcCCCCccEEEEcCCCcc--------------cHHHHHHhccCCCCcce
Q 023482          207 SLFERRKSSSGFAKVVANIPFNI--------------STDVIKQLLPMGDIFSE  246 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~--------------~~~~~~~ll~~~~~~~~  246 (281)
                            ...+.+|.|+.+.|-.+              .-..+.+++++||.+..
T Consensus       124 ------~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~  171 (246)
T 2vdv_E          124 ------FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT  171 (246)
T ss_dssp             ------SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred             ------ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence                  12367888887754332              22334578888877644

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.18  E-value=5.2e-11  Score=114.20  Aligned_cols=101  Identities=14%  Similarity=0.067  Sum_probs=80.8

Q ss_pred             cccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--------------------CCEEEEEeCCHHHH
Q 023482          117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--------------------GATVLAIEKDQHMV  176 (281)
Q Consensus       117 ~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--------------------~~~v~gvD~s~~~l  176 (281)
                      ...|+ |++++.+++.|++.+.+.++.+|||++||+|.++..+++.                    ..+++|+|+++.++
T Consensus       146 ~~~G~-fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~  224 (541)
T 2ar0_A          146 SGAGQ-YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR  224 (541)
T ss_dssp             ----C-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred             ccCCe-eeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH
Confidence            34566 8899999999999999888889999999999999888753                    13799999999999


Q ss_pred             HHHHHHhcCCC--C-----eEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          177 GLVRERFASID--Q-----LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       177 ~~a~~~~~~~~--~-----v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      +.|+.++.-.+  +     +.+.++|....+.           .....||+|++||||..
T Consensus       225 ~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~-----------~~~~~fD~Vv~NPPf~~  273 (541)
T 2ar0_A          225 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG-----------ENLPKAHIVATNPPFGS  273 (541)
T ss_dssp             HHHHHHHHTTTCCCBGGGTBSEEESCTTSHHH-----------HTSCCEEEEEECCCCTT
T ss_pred             HHHHHHHHHhCCCccccccCCeEeCCCccccc-----------ccccCCeEEEECCCccc
Confidence            99998875443  3     7899999876542           12367999999999964

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.18  E-value=1.3e-11  Score=107.68  Aligned_cols=85  Identities=14%  Similarity=0.023  Sum_probs=66.4

Q ss_pred             HHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCH-------HHHHHHHHHhcCC---CCeEEEEcCccccccccc
Q 023482          135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ-------HMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~-------~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~  204 (281)
                      +.+...++.+|||+|||+|..++.++..+++|+|+|+++       .+++.|+++...+   ++++++++|+.++...  
T Consensus        77 ~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~--  154 (258)
T 2r6z_A           77 KAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPA--  154 (258)
T ss_dssp             HHTTGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHH--
T ss_pred             HHhCcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHh--
Confidence            333445678999999999999999999988999999999       9999998876543   2599999999874210  


Q ss_pred             hhhHHHhhcCC--CCccEEEEcCCCcc
Q 023482          205 MLSLFERRKSS--SGFAKVVANIPFNI  229 (281)
Q Consensus       205 ~~d~v~~~~~~--~~~d~Vi~n~P~~~  229 (281)
                              ...  ..||+|+.||||..
T Consensus       155 --------~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          155 --------LVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             --------HHHHHCCCSEEEECCCC--
T ss_pred             --------hhccCCCccEEEECCCCCC
Confidence                    111  57999999999864

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.17  E-value=3.6e-11  Score=102.99  Aligned_cols=94  Identities=12%  Similarity=0.064  Sum_probs=73.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ++.+|||||||+|.++..+++. ..+|+|+|+++.+++.|+++....  .+++++++|+.++++.            .+.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~------------~~~  146 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE------------PDS  146 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCC------------SSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCC------------CCC
Confidence            5789999999999999999887 459999999999999999998754  2799999999888743            257


Q ss_pred             ccEEEEcCCCccc-H-------HHHHHhccCCCCcce
Q 023482          218 FAKVVANIPFNIS-T-------DVIKQLLPMGDIFSE  246 (281)
Q Consensus       218 ~d~Vi~n~P~~~~-~-------~~~~~ll~~~~~~~~  246 (281)
                      ||+|+++..++.. .       ..+.++++++|.+..
T Consensus       147 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i  183 (241)
T 2ex4_A          147 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVI  183 (241)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            9999998554322 2       222467777776644

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.17  E-value=1.6e-10  Score=107.51  Aligned_cols=111  Identities=14%  Similarity=0.141  Sum_probs=80.9

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHH-------HHHhcCC----CCeEEE
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLV-------RERFASI----DQLKVL  192 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a-------~~~~~~~----~~v~~~  192 (281)
                      .+.++..+++.+.+.++.+|||||||+|.++..++.. + .+|+|||+++.+++.|       ++++...    ++++++
T Consensus       227 ~p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i  306 (433)
T 1u2z_A          227 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  306 (433)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence            3788899999999989999999999999999999986 4 4899999999999988       7776532    489999


Q ss_pred             EcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccH-----HHHHHhccCCCCc
Q 023482          193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-----DVIKQLLPMGDIF  244 (281)
Q Consensus       193 ~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-----~~~~~ll~~~~~~  244 (281)
                      ++|....+..   ++     ...+.||+|++|.......     ..+.+.+++||.+
T Consensus       307 ~gD~~~~~~~---~~-----~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~l  355 (433)
T 1u2z_A          307 LKKSFVDNNR---VA-----ELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKI  355 (433)
T ss_dssp             ESSCSTTCHH---HH-----HHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEE
T ss_pred             EcCccccccc---cc-----cccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEE
Confidence            9875532110   00     0125689999974432111     1334667777764

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.17  E-value=7.6e-11  Score=100.83  Aligned_cols=113  Identities=13%  Similarity=0.165  Sum_probs=80.4

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~  197 (281)
                      ...+.....+...+...++.+|||||||+|+++..++..   +.+|+++|+++.+++.|++++...   ++++++++|+.
T Consensus        55 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~  134 (232)
T 3cbg_A           55 QISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPAL  134 (232)
T ss_dssp             SCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            345555555555455556789999999999999999986   569999999999999999987543   26999999986


Q ss_pred             ccccccchhhHHHhhcCC--CCccEEEEcCCCcccHHH---HHHhccCCCCc
Q 023482          198 KCHIRSHMLSLFERRKSS--SGFAKVVANIPFNISTDV---IKQLLPMGDIF  244 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~--~~~d~Vi~n~P~~~~~~~---~~~ll~~~~~~  244 (281)
                      +....     +.   ...  +.||+|+.+.+.......   +.++++++|.+
T Consensus       135 ~~l~~-----l~---~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~l  178 (232)
T 3cbg_A          135 ATLEQ-----LT---QGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLM  178 (232)
T ss_dssp             HHHHH-----HH---TSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             HHHHH-----HH---hcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEE
Confidence            53100     00   112  679999998764333333   34667777654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.17  E-value=2.2e-11  Score=111.96  Aligned_cols=80  Identities=20%  Similarity=0.192  Sum_probs=66.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      ++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|+++...++  +++++++|+.+....     +.   .....|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~-----~~---~~~~~f  280 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRR-----LE---KEGERF  280 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHH-----HH---HTTCCE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHH-----HH---hcCCCe
Confidence            67799999999999999999886799999999999999999987654  699999999875311     00   124689


Q ss_pred             cEEEEcCCCc
Q 023482          219 AKVVANIPFN  228 (281)
Q Consensus       219 d~Vi~n~P~~  228 (281)
                      |+|+.|||+.
T Consensus       281 D~Ii~dpP~~  290 (382)
T 1wxx_A          281 DLVVLDPPAF  290 (382)
T ss_dssp             EEEEECCCCS
T ss_pred             eEEEECCCCC
Confidence            9999999984

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.16  E-value=6.2e-11  Score=104.92  Aligned_cols=45  Identities=20%  Similarity=0.368  Sum_probs=40.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS  185 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~  185 (281)
                      ++.+|||||||+|.++..++..  +.+|+|||+|+.+++.|++++..
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~   92 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRH   92 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHh
Confidence            6789999999999999999997  57999999999999999988653

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.16  E-value=3.7e-11  Score=115.20  Aligned_cols=103  Identities=17%  Similarity=0.116  Sum_probs=81.8

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-----------------CCEEEEEeCCHHHH
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-----------------GATVLAIEKDQHMV  176 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-----------------~~~v~gvD~s~~~l  176 (281)
                      ..++..|+ |++++.+++.|++.+.+.++ +|||.+||+|.+...+++.                 ..+++|+|+++.++
T Consensus       219 ~~~k~~G~-fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~  296 (544)
T 3khk_A          219 AEGKQGGQ-YYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTW  296 (544)
T ss_dssp             TTTCCSTT-TCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHH
T ss_pred             hhCccCCe-EeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHH
Confidence            34455677 99999999999999988766 9999999999998877542                 34899999999999


Q ss_pred             HHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          177 GLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       177 ~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      ..|+.++.-.+   ++.+.++|....+.           .....||+|++||||..
T Consensus       297 ~lA~~Nl~l~gi~~~i~i~~gDtL~~~~-----------~~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          297 KLAAMNMVIRGIDFNFGKKNADSFLDDQ-----------HPDLRADFVMTNPPFNM  341 (544)
T ss_dssp             HHHHHHHHHTTCCCBCCSSSCCTTTSCS-----------CTTCCEEEEEECCCSSC
T ss_pred             HHHHHHHHHhCCCcccceeccchhcCcc-----------cccccccEEEECCCcCC
Confidence            99998875433   44448888776542           22368999999999974

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.16  E-value=3.2e-11  Score=105.09  Aligned_cols=101  Identities=13%  Similarity=0.115  Sum_probs=72.9

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC-----------------------------
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-----------------------------  187 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~-----------------------------  187 (281)
                      ...++.+|||||||+|.++..++..++ +|+|+|+|+.|++.|++++....                             
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            345678999999999998888877775 79999999999999998764321                             


Q ss_pred             --CeE-EEEcCcccc-ccccchhhHHHhhcCCCCccEEEEcCCCccc-------HHHH---HHhccCCCCcceE
Q 023482          188 --QLK-VLQEDFVKC-HIRSHMLSLFERRKSSSGFAKVVANIPFNIS-------TDVI---KQLLPMGDIFSEV  247 (281)
Q Consensus       188 --~v~-~~~gD~~~~-~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~-------~~~~---~~ll~~~~~~~~~  247 (281)
                        +++ ++++|+.+. |+..         ...++||+|+++.-++..       ...+   .++|++||.+-..
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~---------~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~  196 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAP---------AVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT  196 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTT---------CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HhhhheEEeccccCCCCCCc---------cccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence              243 899999884 3221         123689999998655431       1233   3888999877444

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.15  E-value=1.2e-10  Score=100.89  Aligned_cols=90  Identities=21%  Similarity=0.298  Sum_probs=70.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      ++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++...  +  ++++|+.++++.+            +.||+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~--~--~~~~d~~~~~~~~------------~~fD~  117 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK--N--VVEAKAEDLPFPS------------GAFEA  117 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS--C--EEECCTTSCCSCT------------TCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC--C--EEECcHHHCCCCC------------CCEEE
Confidence            678999999999999999999988999999999999999988762  2  8999999887533            67999


Q ss_pred             EEEcCCC-cc---cH---HHHHHhccCCCCcce
Q 023482          221 VVANIPF-NI---ST---DVIKQLLPMGDIFSE  246 (281)
Q Consensus       221 Vi~n~P~-~~---~~---~~~~~ll~~~~~~~~  246 (281)
                      |+++... ++   ..   ..+.++++++|.+..
T Consensus       118 v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  150 (260)
T 2avn_A          118 VLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA  150 (260)
T ss_dssp             EEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEcchhhhccccHHHHHHHHHHHcCCCeEEEE
Confidence            9986432 22   12   233577788876643

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.15  E-value=1.5e-10  Score=109.41  Aligned_cols=101  Identities=17%  Similarity=0.204  Sum_probs=78.0

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccch
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~  205 (281)
                      .+.+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.|++++..+   ++++++++|+.+++++   
T Consensus       147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~---  222 (480)
T 3b3j_A          147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---  222 (480)
T ss_dssp             HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS---
T ss_pred             HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC---
Confidence            4456666666678899999999999999999885 4999999998 999999887654   4899999999987532   


Q ss_pred             hhHHHhhcCCCCccEEEEcCCC-ccc----HHHH---HHhccCCCCc
Q 023482          206 LSLFERRKSSSGFAKVVANIPF-NIS----TDVI---KQLLPMGDIF  244 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~-~~~----~~~~---~~ll~~~~~~  244 (281)
                                +.||+|+++++. +..    ...+   .++++++|.+
T Consensus       223 ----------~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~l  259 (480)
T 3b3j_A          223 ----------EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNM  259 (480)
T ss_dssp             ----------SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEE
T ss_pred             ----------CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEE
Confidence                      579999999883 322    1222   3667777765

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.14  E-value=2.2e-10  Score=102.01  Aligned_cols=113  Identities=12%  Similarity=0.127  Sum_probs=79.2

Q ss_pred             HHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC---------CCeEEEEcCc
Q 023482          129 INDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---------DQLKVLQEDF  196 (281)
Q Consensus       129 ~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~---------~~v~~~~gD~  196 (281)
                      ++..+++.+..  .++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++....         .+++++++|+
T Consensus        20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~   99 (313)
T 3bgv_A           20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS   99 (313)
T ss_dssp             HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT
T ss_pred             HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc
Confidence            33444444432  26779999999999999999876 569999999999999999887532         3799999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCccc-------HHHH---HHhccCCCCcceE
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-------TDVI---KQLLPMGDIFSEV  247 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~-------~~~~---~~ll~~~~~~~~~  247 (281)
                      .++++.+...      ...+.||+|+++..+++.       ..++   .++++++|.+-..
T Consensus       100 ~~~~~~~~~~------~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (313)
T 3bgv_A          100 SKELLIDKFR------DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGT  154 (313)
T ss_dssp             TTSCSTTTCS------STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccchhhhcc------cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            9876211000      123589999999877664       1222   3667888776433

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.13  E-value=4.3e-11  Score=110.56  Aligned_cols=78  Identities=15%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcCcccc-ccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKC-HIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~----~~v~~~~gD~~~~-~~~d~~~d~v~~~~~~  215 (281)
                      ++.+|||+|||+|..+..++..+.+|++||+|+.+++.|+.|....    ++++++++|+.+. +.           ...
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-----------~~~  161 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-----------IKT  161 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-----------HHH
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-----------ccC
Confidence            4789999999999999999998899999999999999999998744    4799999999874 21           011


Q ss_pred             CCccEEEEcCCCcc
Q 023482          216 SGFAKVVANIPFNI  229 (281)
Q Consensus       216 ~~~d~Vi~n~P~~~  229 (281)
                      ..||+|+.||||..
T Consensus       162 ~~fDvV~lDPPrr~  175 (410)
T 3ll7_A          162 FHPDYIYVDPARRS  175 (410)
T ss_dssp             HCCSEEEECCEEC-
T ss_pred             CCceEEEECCCCcC
Confidence            47999999999975

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.12  E-value=5.1e-10  Score=98.51  Aligned_cols=110  Identities=23%  Similarity=0.262  Sum_probs=74.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeC-CHHHHHHHHHHh-----cCC-------CCeEEEEc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK-DQHMVGLVRERF-----ASI-------DQLKVLQE  194 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~-s~~~l~~a~~~~-----~~~-------~~v~~~~g  194 (281)
                      +.+.+.......++.+|||+|||+|.++..++..+. +|+|+|+ ++.+++.|+++.     ...       ++++++..
T Consensus        67 l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~  146 (281)
T 3bzb_A           67 LADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPY  146 (281)
T ss_dssp             HHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEEC
T ss_pred             HHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEe
Confidence            445555555455778999999999999999999876 9999999 899999999998     332       26778766


Q ss_pred             CccccccccchhhHHHhhcCCCCccEEEE-cCCCccc--H---HHHHHhcc---C--CCCc
Q 023482          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVA-NIPFNIS--T---DVIKQLLP---M--GDIF  244 (281)
Q Consensus       195 D~~~~~~~d~~~d~v~~~~~~~~~d~Vi~-n~P~~~~--~---~~~~~ll~---~--~~~~  244 (281)
                      |..+..-     ++... ...+.||+|++ +..|+..  .   ..+.++++   +  +|.+
T Consensus       147 ~~~~~~~-----~~~~~-~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l  201 (281)
T 3bzb_A          147 RWGDSPD-----SLQRC-TGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVA  201 (281)
T ss_dssp             CTTSCTH-----HHHHH-HSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEE
T ss_pred             cCCCccH-----HHHhh-ccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEE
Confidence            6544210     11100 02468999997 6666542  1   33457777   7  7754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.12  E-value=2.4e-10  Score=112.83  Aligned_cols=92  Identities=15%  Similarity=0.190  Sum_probs=72.1

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVK  198 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~~  198 (281)
                      +.++.....++..+.  ++.+|||+|||+|.++..++..++ +|++||+|+.+++.|++|+..++    +++++++|+.+
T Consensus       524 f~d~r~~r~~l~~~~--~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~  601 (703)
T 3v97_A          524 FLDHRIARRMLGQMS--KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLA  601 (703)
T ss_dssp             CGGGHHHHHHHHHHC--TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHH
T ss_pred             cccHHHHHHHHHHhc--CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH
Confidence            334444444444433  678999999999999999998866 79999999999999999987553    79999999987


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      ...           ...+.||+|++|||+.
T Consensus       602 ~l~-----------~~~~~fD~Ii~DPP~f  620 (703)
T 3v97_A          602 WLR-----------EANEQFDLIFIDPPTF  620 (703)
T ss_dssp             HHH-----------HCCCCEEEEEECCCSB
T ss_pred             HHH-----------hcCCCccEEEECCccc
Confidence            421           2236899999999974

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.12  E-value=1.2e-10  Score=105.21  Aligned_cols=96  Identities=16%  Similarity=0.232  Sum_probs=72.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHH
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      ...+.+|||||||+|.++..+++.  ..+|++||+|+.+++.|++++..      .++++++++|+.+....        
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~--------  189 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN--------  189 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT--------
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHh--------
Confidence            346689999999999999999987  46999999999999999998753      25899999998764110        


Q ss_pred             hhcCCCCccEEEEcCC--Ccc-----cH---HHHHHhccCCCCc
Q 023482          211 RRKSSSGFAKVVANIP--FNI-----ST---DVIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P--~~~-----~~---~~~~~ll~~~~~~  244 (281)
                        ...+.||+|++|++  ...     ..   ..+.++|+++|.+
T Consensus       190 --~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~l  231 (334)
T 1xj5_A          190 --AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVV  231 (334)
T ss_dssp             --SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEE
T ss_pred             --ccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEE
Confidence              12367999999875  221     12   2345777777765

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.12  E-value=1.2e-10  Score=102.61  Aligned_cols=111  Identities=14%  Similarity=0.072  Sum_probs=75.0

Q ss_pred             HHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC-------------------
Q 023482          130 NDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-------------------  187 (281)
Q Consensus       130 ~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~-------------------  187 (281)
                      ...+.+.+..  .++.+|||||||+|..+..++.. +.+|+|+|+|+.|++.|++++....                   
T Consensus        58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~  137 (289)
T 2g72_A           58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence            3445555433  36789999999999965545443 6799999999999999988654310                   


Q ss_pred             -------------CeEEEEcCccc-cccccchhhHHHhhcCCCCccEEEEcCCCcc----cH------HHHHHhccCCCC
Q 023482          188 -------------QLKVLQEDFVK-CHIRSHMLSLFERRKSSSGFAKVVANIPFNI----ST------DVIKQLLPMGDI  243 (281)
Q Consensus       188 -------------~v~~~~gD~~~-~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~----~~------~~~~~ll~~~~~  243 (281)
                                   .++++.+|+.+ +|+.+..       ...++||+|+++..+++    ..      ..+.++|++||.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-------~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~  210 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGS-------PAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGH  210 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSC-------SSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred             cchhhhHHHHHhhhceEEecccCCCCCccccc-------cCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCE
Confidence                         15678889987 6543211       12356999999877655    21      223577888887


Q ss_pred             cceE
Q 023482          244 FSEV  247 (281)
Q Consensus       244 ~~~~  247 (281)
                      +...
T Consensus       211 l~~~  214 (289)
T 2g72_A          211 LLLI  214 (289)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.11  E-value=1.4e-10  Score=103.49  Aligned_cols=96  Identities=15%  Similarity=0.241  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHH
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      ...+.+|||||||+|.++..+++..  .+|++||+|+.+++.|++++..      .++++++.+|+.+.-.         
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~---------  163 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK---------  163 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH---------
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh---------
Confidence            3466899999999999999999873  6999999999999999998753      3589999999976310         


Q ss_pred             hhcCCCCccEEEEcCCCccc----------HHHHHHhccCCCCcc
Q 023482          211 RRKSSSGFAKVVANIPFNIS----------TDVIKQLLPMGDIFS  245 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~----------~~~~~~ll~~~~~~~  245 (281)
                        ...+.||+||++++....          -..+.++++++|.+.
T Consensus       164 --~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv  206 (304)
T 2o07_A          164 --QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLC  206 (304)
T ss_dssp             --TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEE
T ss_pred             --hCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEE
Confidence              123679999998875322          233457777777663

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.11  E-value=9.8e-11  Score=101.11  Aligned_cols=100  Identities=11%  Similarity=0.167  Sum_probs=75.0

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCC----------------------------
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQ----------------------------  188 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~----------------------------  188 (281)
                      ...++.+|||+|||+|.++..++..+. +|+|+|+++.+++.|+++....++                            
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            334667999999999999999998877 999999999999999998865432                            


Q ss_pred             ---e-EEEEcCcccccc-ccchhhHHHhhcCCCCccEEEEcCCCc----c---cHHH---HHHhccCCCCcce
Q 023482          189 ---L-KVLQEDFVKCHI-RSHMLSLFERRKSSSGFAKVVANIPFN----I---STDV---IKQLLPMGDIFSE  246 (281)
Q Consensus       189 ---v-~~~~gD~~~~~~-~d~~~d~v~~~~~~~~~d~Vi~n~P~~----~---~~~~---~~~ll~~~~~~~~  246 (281)
                         + +++++|+.+.+. .+         ...+.||+|+++..++    .   ...+   +.+++++||.+-.
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~---------~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~  196 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGG---------VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVM  196 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTT---------CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hhhheeEEEeeeccCCCCCc---------cccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Confidence               7 999999988643 11         1226799999976554    2   1222   3467788876633

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.11  E-value=2.8e-10  Score=96.74  Aligned_cols=68  Identities=21%  Similarity=0.331  Sum_probs=60.1

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++..   +++++++|+.++++             .+.||
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~---~~~~~~~d~~~~~~-------------~~~~D  102 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLP---DATLHQGDMRDFRL-------------GRKFS  102 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCT---TCEEEECCTTTCCC-------------SSCEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCC---CCEEEECCHHHccc-------------CCCCc
Confidence            467899999999999999999987799999999999999998864   79999999998763             26799


Q ss_pred             EEEE
Q 023482          220 KVVA  223 (281)
Q Consensus       220 ~Vi~  223 (281)
                      +|++
T Consensus       103 ~v~~  106 (239)
T 3bxo_A          103 AVVS  106 (239)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9995

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.11  E-value=8.1e-10  Score=97.02  Aligned_cols=123  Identities=15%  Similarity=0.059  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHhc-CCCCCEEEEEcCCc---cHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccc
Q 023482          127 SEINDQLAAAAA-VQEGDIVLEIGPGT---GSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (281)
Q Consensus       127 ~~~~~~l~~~l~-~~~~~~VLDiGcG~---G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~  200 (281)
                      +.+...++..+. .....+|||||||+   |.++..+++.  +.+|+++|+|+.|++.|++++...++++++++|+.+.+
T Consensus        62 ~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~  141 (274)
T 2qe6_A           62 RKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPE  141 (274)
T ss_dssp             HHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHH
T ss_pred             hHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCch
Confidence            345556666655 23447999999999   9988777664  67999999999999999999876569999999998753


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcccH-----HH---HHHhccCCCCcceEEEe
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST-----DV---IKQLLPMGDIFSEVVLL  250 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-----~~---~~~ll~~~~~~~~~~~~  250 (281)
                      ..-..-+.-.. ...+.||+|+++.-+++..     .+   +.+.+++|+.+......
T Consensus       142 ~~~~~~~~~~~-~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          142 YILNHPDVRRM-IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             HHHHSHHHHHH-CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             hhhccchhhcc-CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            11000000000 1224789999986554322     23   34777888887555543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.10  E-value=1.6e-10  Score=101.64  Aligned_cols=93  Identities=17%  Similarity=0.242  Sum_probs=72.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHhh
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      .+.+|||||||+|.++..+++. + .+|++||+|+.+++.|++++..      .++++++.+|+.+.-.           
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~-----------  143 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA-----------  143 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH-----------
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-----------
Confidence            5679999999999999999987 4 6999999999999999998732      2489999999876310           


Q ss_pred             cCCCCccEEEEcCCCccc----------HHHHHHhccCCCCc
Q 023482          213 KSSSGFAKVVANIPFNIS----------TDVIKQLLPMGDIF  244 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~----------~~~~~~ll~~~~~~  244 (281)
                      ...+.||+|+++++....          -..+.++++++|.+
T Consensus       144 ~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~l  185 (275)
T 1iy9_A          144 KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIF  185 (275)
T ss_dssp             TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEE
T ss_pred             hCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEE
Confidence            123679999999876321          23445777777765

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.09  E-value=3.1e-10  Score=97.01  Aligned_cols=62  Identities=16%  Similarity=0.154  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIR  202 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~  202 (281)
                      ++.+|||||||+|++++.++..+  .+|+|+|+++.+++.|++|+..++   ++++.++|..+...+
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~   87 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE   87 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc
Confidence            67899999999999999999985  389999999999999999998664   799999999887543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.09  E-value=1.9e-10  Score=103.00  Aligned_cols=95  Identities=15%  Similarity=0.276  Sum_probs=74.4

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC-------CCCeEEEEcCccccccccchhhHHH
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~-------~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      ..+.+|||||||+|.++..+++.  +.+|++||+|+.+++.|++++..       .++++++.+|+.+...         
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~---------  146 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE---------  146 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH---------
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH---------
Confidence            45679999999999999999987  46999999999999999998753       3589999999987410         


Q ss_pred             hhcCCCCccEEEEcCCCcc---c-------HH---HHHHhccCCCCcc
Q 023482          211 RRKSSSGFAKVVANIPFNI---S-------TD---VIKQLLPMGDIFS  245 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~---~-------~~---~~~~ll~~~~~~~  245 (281)
                        ...+.||+|+++++...   .       ..   .+.++++++|.+.
T Consensus       147 --~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv  192 (314)
T 1uir_A          147 --RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMG  192 (314)
T ss_dssp             --HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEE
T ss_pred             --hcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEE
Confidence              22467999999987755   1       23   3457777777664

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.09  E-value=1e-10  Score=101.83  Aligned_cols=89  Identities=17%  Similarity=0.262  Sum_probs=68.6

Q ss_pred             HHHHHHhcCCCC--CEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC----------C-CCeEEEEcCcc
Q 023482          131 DQLAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS----------I-DQLKVLQEDFV  197 (281)
Q Consensus       131 ~~l~~~l~~~~~--~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~----------~-~~v~~~~gD~~  197 (281)
                      +.+.+.+.+.++  .+|||+|||+|..+..++..+++|++||+++.+++.++.+++.          . .+++++++|+.
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~  155 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHH
Confidence            345566666677  8999999999999999999988999999999886666655421          1 36999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                      ++--           ...+.||+|+.||||...
T Consensus       156 ~~L~-----------~~~~~fDvV~lDP~y~~~  177 (258)
T 2oyr_A          156 TALT-----------DITPRPQVVYLDPMFPHK  177 (258)
T ss_dssp             HHST-----------TCSSCCSEEEECCCCCCC
T ss_pred             HHHH-----------hCcccCCEEEEcCCCCCc
Confidence            7421           112469999999999653

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.09  E-value=3.1e-10  Score=97.82  Aligned_cols=61  Identities=13%  Similarity=0.095  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHI  201 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~  201 (281)
                      ++.+|||||||+|++++.++..+  .+|+|+|+++.+++.|++|+..++   ++++..+|..+...
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~   86 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE   86 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC
Confidence            67899999999999999999985  389999999999999999987664   69999999988654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.09  E-value=3.2e-10  Score=101.10  Aligned_cols=95  Identities=15%  Similarity=0.171  Sum_probs=72.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhc------CCCCeEEEEcCccccccccchhhHHHh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~------~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      .++.+|||||||+|.++..+++.  ..+|++||+|+.+++.|++++.      ..++++++.+|+.+.+..         
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~---------  164 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ---------  164 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS---------
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh---------
Confidence            46689999999999999999987  4699999999999999998873      124899999999876421         


Q ss_pred             hcCCCCccEEEEcCCCccc-------H---HHHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIPFNIS-------T---DVIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~-------~---~~~~~ll~~~~~~  244 (281)
                       ...+.||+|+++.+....       .   ..+.++++++|.+
T Consensus       165 -~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l  206 (304)
T 3bwc_A          165 -TPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGIC  206 (304)
T ss_dssp             -SCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEE
T ss_pred             -ccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEE
Confidence             024689999998765432       1   2335777777765

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.09  E-value=2.6e-10  Score=101.99  Aligned_cols=96  Identities=14%  Similarity=0.152  Sum_probs=76.2

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK  198 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~  198 (281)
                      +.+......+...+.+.++.+|||+|||+|..+..++..   ..+|+|+|+++.+++.+++++++.+  +++++++|+.+
T Consensus        85 ~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~  164 (309)
T 2b9e_A           85 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA  164 (309)
T ss_dssp             EECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred             EEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHh
Confidence            333333445556677888999999999999999999985   3699999999999999999998664  89999999988


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      ++..+         .....||.|+.++|+.
T Consensus       165 ~~~~~---------~~~~~fD~Vl~D~PcS  185 (309)
T 2b9e_A          165 VSPSD---------PRYHEVHYILLDPSCS  185 (309)
T ss_dssp             SCTTC---------GGGTTEEEEEECCCCC
T ss_pred             cCccc---------cccCCCCEEEEcCCcC
Confidence            75321         1114699999999973

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=99.08  E-value=4.6e-10  Score=107.39  Aligned_cols=103  Identities=16%  Similarity=0.223  Sum_probs=83.0

Q ss_pred             cccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---------------CCEEEEEeCCHHHHHHHHH
Q 023482          117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---------------GATVLAIEKDQHMVGLVRE  181 (281)
Q Consensus       117 ~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---------------~~~v~gvD~s~~~l~~a~~  181 (281)
                      ...|+ |++++.+++.|++.+.+.++.+|+|.+||+|.+...+.+.               ...++|+|+++.++..|+.
T Consensus       194 g~~Gq-fyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~m  272 (530)
T 3ufb_A          194 GDSGE-FYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQM  272 (530)
T ss_dssp             SSCCC-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHH
T ss_pred             CcCce-ECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHH
Confidence            34577 9999999999999999999999999999999998877542               2469999999999999987


Q ss_pred             HhcC--CCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          182 RFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       182 ~~~~--~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +.--  .+...+.++|....+..+.        .....||+|++||||.
T Consensus       273 Nl~lhg~~~~~I~~~dtL~~~~~~~--------~~~~~fD~Il~NPPf~  313 (530)
T 3ufb_A          273 NLLLHGLEYPRIDPENSLRFPLREM--------GDKDRVDVILTNPPFG  313 (530)
T ss_dssp             HHHHHTCSCCEEECSCTTCSCGGGC--------CGGGCBSEEEECCCSS
T ss_pred             HHHhcCCccccccccccccCchhhh--------cccccceEEEecCCCC
Confidence            7542  2356788999887664321        2235799999999995

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.08  E-value=2.1e-10  Score=103.11  Aligned_cols=94  Identities=17%  Similarity=0.224  Sum_probs=72.1

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ..+.+|||||||+|.++..+++.  +.+|+++|+|+.+++.|++++..      .++++++++|+.+...          
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~----------  184 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE----------  184 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH----------
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh----------
Confidence            45679999999999999999987  46999999999999999999865      3489999999876311          


Q ss_pred             hcCCCCccEEEEcCC--Cccc-----HH---HHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIP--FNIS-----TD---VIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P--~~~~-----~~---~~~~ll~~~~~~  244 (281)
                       ...+.||+|++|++  +...     ..   .+.++++++|.+
T Consensus       185 -~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~l  226 (321)
T 2pt6_A          185 -NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYC  226 (321)
T ss_dssp             -HCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEE
T ss_pred             -hcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEE
Confidence             12367999999873  3211     22   334677777765

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.08  E-value=5.9e-10  Score=110.01  Aligned_cols=97  Identities=12%  Similarity=0.155  Sum_probs=80.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---------------------------------------
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---------------------------------------  163 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---------------------------------------  163 (281)
                      -.....++..++......++..|||++||+|.+++.++..+                                       
T Consensus       172 apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~  251 (703)
T 3v97_A          172 APIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG  251 (703)
T ss_dssp             CSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence            34567888899999888888899999999999998877542                                       


Q ss_pred             -----CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          164 -----ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       164 -----~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                           .+|+|+|+|+.+++.|+.|...++   .+++.++|+.++..+          ...+.+|+||+||||..
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~----------~~~~~~d~Iv~NPPYG~  315 (703)
T 3v97_A          252 LAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNP----------LPKGPYGTVLSNPPYGE  315 (703)
T ss_dssp             HHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS----------CTTCCCCEEEECCCCCC
T ss_pred             cccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc----------cccCCCCEEEeCCCccc
Confidence                 479999999999999999987665   599999999987422          11237999999999975

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.07  E-value=6e-11  Score=111.43  Aligned_cols=95  Identities=20%  Similarity=0.205  Sum_probs=76.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVK  198 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~  198 (281)
                      ++.+......+...+.+.++.+|||+|||+|..+..+++.   .++|+|+|+++.+++.+++++.+.+ .++++++|+.+
T Consensus        83 ~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~  162 (464)
T 3m6w_A           83 YYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRA  162 (464)
T ss_dssp             EEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHH
T ss_pred             EEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            4444444555666778888999999999999999999976   3699999999999999999987543 48999999987


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      ++.           ...+.||+|+.|+|+.
T Consensus       163 l~~-----------~~~~~FD~Il~D~PcS  181 (464)
T 3m6w_A          163 LAE-----------AFGTYFHRVLLDAPCS  181 (464)
T ss_dssp             HHH-----------HHCSCEEEEEEECCCC
T ss_pred             hhh-----------hccccCCEEEECCCcC
Confidence            641           1236899999999973

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.07  E-value=2.6e-10  Score=101.28  Aligned_cols=94  Identities=15%  Similarity=0.163  Sum_probs=70.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ..+.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++..      .++++++++|+.+...          
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~----------  158 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR----------  158 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG----------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh----------
Confidence            35679999999999999999987  46999999999999999998742      3589999999876421          


Q ss_pred             hcCCCCccEEEEcCCCc-c-------cH---HHHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIPFN-I-------ST---DVIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~-~-------~~---~~~~~ll~~~~~~  244 (281)
                       ...+.||+|++++|.. .       ..   ..+.++++++|.+
T Consensus       159 -~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l  201 (296)
T 1inl_A          159 -KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVF  201 (296)
T ss_dssp             -GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEE
T ss_pred             -hCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEE
Confidence             1236799999987643 1       12   2334677777755

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.06  E-value=4.6e-10  Score=95.69  Aligned_cols=58  Identities=17%  Similarity=0.221  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~  198 (281)
                      ++.+|||||||+|++++.++..+  .+|+|+|+++.+++.|++|...++   ++++..+|+.+
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~   77 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA   77 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh
Confidence            67799999999999999999985  489999999999999999998664   69999999865

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.05  E-value=9.3e-10  Score=91.47  Aligned_cols=97  Identities=22%  Similarity=0.331  Sum_probs=68.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      +.++.+|||+|||+|.++..+++.+++|+|||+++..         ...+++++++|+.+.+..+...+.+.. ...+.|
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---------~~~~v~~~~~D~~~~~~~~~~~~~~~~-~~~~~~   92 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---------EIAGVRFIRCDIFKETIFDDIDRALRE-EGIEKV   92 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---------CCTTCEEEECCTTSSSHHHHHHHHHHH-HTCSSE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---------cCCCeEEEEccccCHHHHHHHHHHhhc-ccCCcc
Confidence            3577899999999999999999998899999999741         224899999999886543322222110 011389


Q ss_pred             cEEEEcCCCccc----H-------------HHHHHhccCCCCcc
Q 023482          219 AKVVANIPFNIS----T-------------DVIKQLLPMGDIFS  245 (281)
Q Consensus       219 d~Vi~n~P~~~~----~-------------~~~~~ll~~~~~~~  245 (281)
                      |+|++|++....    .             ....++|++||.+-
T Consensus        93 D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv  136 (191)
T 3dou_A           93 DDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVL  136 (191)
T ss_dssp             EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             eEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence            999999765321    1             12247788888774

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.05  E-value=3.6e-10  Score=99.97  Aligned_cols=106  Identities=19%  Similarity=0.225  Sum_probs=74.0

Q ss_pred             HHHHHHHHhcCC-CCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEE-EcCccccccccch
Q 023482          129 INDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVL-QEDFVKCHIRSHM  205 (281)
Q Consensus       129 ~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~-~gD~~~~~~~d~~  205 (281)
                      -+..+++.+.+. ++.+|||+|||||.++..+++.++ +|+|||+++.|++.+.++.   .++... ..|+..++..+  
T Consensus        72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~---~rv~~~~~~ni~~l~~~~--  146 (291)
T 3hp7_A           72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD---DRVRSMEQYNFRYAEPVD--  146 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC---TTEEEECSCCGGGCCGGG--
T ss_pred             HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cccceecccCceecchhh--
Confidence            345566666654 567999999999999999999865 9999999999999865432   244333 34555554321  


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCccc---HHHHHHhccCCCCcce
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNIS---TDVIKQLLPMGDIFSE  246 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~~---~~~~~~ll~~~~~~~~  246 (281)
                             .....||.|+++.-|...   -+.+.++++++|.+-.
T Consensus       147 -------l~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~  183 (291)
T 3hp7_A          147 -------FTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVA  183 (291)
T ss_dssp             -------CTTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEE
T ss_pred             -------CCCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEE
Confidence                   122458999998776543   3556789999987633

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.05  E-value=4.3e-10  Score=105.56  Aligned_cols=94  Identities=16%  Similarity=0.209  Sum_probs=76.0

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcccc
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC  199 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~  199 (281)
                      .+......+...+.+.++.+|||+|||+|..+..++..  + .+|+|+|+++.+++.++++....+  +++++++|+.++
T Consensus       243 ~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~  322 (450)
T 2yxl_A          243 VQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKA  322 (450)
T ss_dssp             ECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCC
T ss_pred             ecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhc
Confidence            33444555566778888999999999999999999985  3 699999999999999999987554  899999999887


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +..          ...+.||+|+.|+|+.
T Consensus       323 ~~~----------~~~~~fD~Vl~D~Pcs  341 (450)
T 2yxl_A          323 PEI----------IGEEVADKVLLDAPCT  341 (450)
T ss_dssp             SSS----------SCSSCEEEEEEECCCC
T ss_pred             chh----------hccCCCCEEEEcCCCC
Confidence            521          1125799999999984

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.05  E-value=2.8e-10  Score=94.16  Aligned_cols=86  Identities=10%  Similarity=0.040  Sum_probs=63.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchh
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~  206 (281)
                      ...+...+.  ++.+|||+|||+|.++..++..  +++|+|+|+|+.|++.++++....+ ..++..+|..+.       
T Consensus        40 Y~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-------  110 (200)
T 3fzg_A           40 YTYVFGNIK--HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-------  110 (200)
T ss_dssp             HHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-------
T ss_pred             HHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-------
Confidence            444445553  5779999999999999999776  6699999999999999999987654 223333665443       


Q ss_pred             hHHHhhcCCCCccEEEEcCCCccc
Q 023482          207 SLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                            ..++.||+|+++.-++..
T Consensus       111 ------~~~~~~DvVLa~k~LHlL  128 (200)
T 3fzg_A          111 ------VYKGTYDVVFLLKMLPVL  128 (200)
T ss_dssp             ------HTTSEEEEEEEETCHHHH
T ss_pred             ------CCCCCcChhhHhhHHHhh
Confidence                  234679999997655433

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.05  E-value=3.9e-10  Score=106.53  Aligned_cols=95  Identities=14%  Similarity=0.152  Sum_probs=76.2

Q ss_pred             ccCCHHHHHHHHHHhcCC--CCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcC
Q 023482          123 YMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQED  195 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD  195 (281)
                      ++.+......+...+.+.  ++.+|||+|||+|..|..+++.   .++|+|+|+++.+++.+++++.+.  .+++++++|
T Consensus        97 ~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D  176 (479)
T 2frx_A           97 FYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD  176 (479)
T ss_dssp             EEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred             EEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            444444444455666777  8899999999999999999986   369999999999999999998754  389999999


Q ss_pred             ccccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       196 ~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +.+++.           ...+.||+|++|+|+.
T Consensus       177 ~~~~~~-----------~~~~~fD~Il~D~PcS  198 (479)
T 2frx_A          177 GRVFGA-----------AVPEMFDAILLDAPCS  198 (479)
T ss_dssp             STTHHH-----------HSTTCEEEEEEECCCC
T ss_pred             HHHhhh-----------hccccCCEEEECCCcC
Confidence            988652           1236799999999974

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.04  E-value=8.2e-10  Score=108.66  Aligned_cols=114  Identities=15%  Similarity=0.181  Sum_probs=83.2

Q ss_pred             HHHHHHHhcCCCCCcccCccccCCHHHHHHHHHH----hc--CCCCCEEEEEcCCccHHHHHHHHcC-----CEEEEEeC
Q 023482          103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAA----AA--VQEGDIVLEIGPGTGSLTNVLLNAG-----ATVLAIEK  171 (281)
Q Consensus       103 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~----l~--~~~~~~VLDiGcG~G~~t~~la~~~-----~~v~gvD~  171 (281)
                      .+.+.+.++....+...|+ |++++.++..|+..    +.  ..++.+|||+|||+|.++..++...     .+++|+|+
T Consensus       278 dL~ell~eya~k~Rkk~Gq-FYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEI  356 (878)
T 3s1s_A          278 ELAELIHDIATRGRGHEGV-VPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDI  356 (878)
T ss_dssp             HHHHHHHHHHTTSCCCCBS-SSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECS
T ss_pred             HHHHHHHHHHHHhCCcCce-EcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEEC
Confidence            3334444455566667777 99999999999887    32  2357799999999999999998762     37999999


Q ss_pred             CHHHHHHH--HHHhcCC----C--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          172 DQHMVGLV--RERFASI----D--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       172 s~~~l~~a--~~~~~~~----~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      ++.+++.|  +.+...+    +  ...+...|+.....           .....||+||+||||.
T Consensus       357 Dp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~-----------~~~~kFDVVIgNPPYg  410 (878)
T 3s1s_A          357 ETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP-----------EDFANVSVVVMNPPYV  410 (878)
T ss_dssp             CGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG-----------GGGTTEEEEEECCBCC
T ss_pred             CHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccc-----------cccCCCCEEEECCCcc
Confidence            99999999  5554431    1  34566666665321           1236799999999994

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.04  E-value=3.3e-10  Score=91.08  Aligned_cols=101  Identities=18%  Similarity=0.286  Sum_probs=70.3

Q ss_pred             HHHHHhc-CCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482          132 QLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       132 ~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      .+++.+. ..++.+|||+|||+|.++..+++.   +.+++|+|+++ +++.        .+++++++|+.+.+..+....
T Consensus        12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------~~~~~~~~d~~~~~~~~~~~~   82 (180)
T 1ej0_A           12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------VGVDFLQGDFRDELVMKALLE   82 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------TTEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------CcEEEEEcccccchhhhhhhc
Confidence            3444444 557789999999999999999987   36999999999 6532        589999999988651110000


Q ss_pred             HHHhhcCCCCccEEEEcCCCccc--------------HHH---HHHhccCCCCcc
Q 023482          208 LFERRKSSSGFAKVVANIPFNIS--------------TDV---IKQLLPMGDIFS  245 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~--------------~~~---~~~ll~~~~~~~  245 (281)
                      .    ...+.||+|++|+|++..              ..+   +.++++++|.+.
T Consensus        83 ~----~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  133 (180)
T 1ej0_A           83 R----VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFV  133 (180)
T ss_dssp             H----HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             c----CCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence            0    123689999999887542              222   346777777654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.04  E-value=4.3e-10  Score=99.13  Aligned_cols=94  Identities=18%  Similarity=0.269  Sum_probs=72.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhc------------CCCCeEEEEcCccccccccchh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFA------------SIDQLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~------------~~~~v~~~~gD~~~~~~~d~~~  206 (281)
                      ..+.+|||||||+|.++..+++.+ .+|++||+|+.+++.|++++.            ..++++++.+|+.+...     
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~-----  148 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK-----  148 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH-----
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhc-----
Confidence            456799999999999999999884 599999999999999999871            12489999999876311     


Q ss_pred             hHHHhhcCCCCccEEEEcCCCccc-------H---HHHHHhccCCCCcc
Q 023482          207 SLFERRKSSSGFAKVVANIPFNIS-------T---DVIKQLLPMGDIFS  245 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~~-------~---~~~~~ll~~~~~~~  245 (281)
                            . .+.||+|++++|....       .   ..+.++++++|.+.
T Consensus       149 ------~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv  190 (281)
T 1mjf_A          149 ------N-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYV  190 (281)
T ss_dssp             ------H-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEE
T ss_pred             ------c-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEE
Confidence                  2 3679999999875321       2   23357777777653

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.03  E-value=6.7e-10  Score=99.30  Aligned_cols=93  Identities=13%  Similarity=0.191  Sum_probs=71.4

Q ss_pred             CEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      .+|||||||+|.++..+++.  +.+|++||+|+.+++.|++++...  ++++++++|+.++...          ...+.|
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~----------~~~~~f  160 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAES----------FTPASR  160 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHT----------CCTTCE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhh----------ccCCCC
Confidence            39999999999999999984  679999999999999999998743  4899999999875210          123689


Q ss_pred             cEEEEcCCCcc-------cH---HHHHHhccCCCCcc
Q 023482          219 AKVVANIPFNI-------ST---DVIKQLLPMGDIFS  245 (281)
Q Consensus       219 d~Vi~n~P~~~-------~~---~~~~~ll~~~~~~~  245 (281)
                      |+||++.....       ..   ..+.++|+++|.+.
T Consensus       161 DvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv  197 (317)
T 3gjy_A          161 DVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYV  197 (317)
T ss_dssp             EEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEE
T ss_pred             CEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEE
Confidence            99999753221       12   33457788887763

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.03  E-value=4.3e-10  Score=100.72  Aligned_cols=94  Identities=16%  Similarity=0.250  Sum_probs=71.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ..+.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++..      .++++++.+|+.+...          
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~----------  176 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK----------  176 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH----------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH----------
Confidence            35679999999999999999987  46999999999999999999864      2489999999976311          


Q ss_pred             hcCCCCccEEEEcCCCcc----------cHHHHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIPFNI----------STDVIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~----------~~~~~~~ll~~~~~~  244 (281)
                       ...+.||+|+++++...          .-..+.++++++|.+
T Consensus       177 -~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~l  218 (314)
T 2b2c_A          177 -NHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGIL  218 (314)
T ss_dssp             -HCTTCEEEEEECCC-------------HHHHHHHHEEEEEEE
T ss_pred             -hcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEE
Confidence             12367999999875321          112335677777655

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.03  E-value=5.5e-10  Score=99.49  Aligned_cols=101  Identities=17%  Similarity=0.171  Sum_probs=67.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC--------CeEEEEcCccccccccchhhHHHh
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID--------QLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~--------~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ++.+|||||||+|..+..++.. +.+|+|+|+|+.|++.|+++....+        ++++.++|+..-.+..   ++. .
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~---~l~-~  123 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVS---SVR-E  123 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHH---HHH-T
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhh---hhh-c
Confidence            4679999999999866666655 5799999999999999998875332        2678888873311100   000 0


Q ss_pred             hcCCCCccEEEEcCCCcc------cH---HHHHHhccCCCCcc
Q 023482          212 RKSSSGFAKVVANIPFNI------ST---DVIKQLLPMGDIFS  245 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~------~~---~~~~~ll~~~~~~~  245 (281)
                      ....+.||+|++...++.      ..   ..+.++|++||.+-
T Consensus       124 ~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i  166 (302)
T 2vdw_A          124 VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVL  166 (302)
T ss_dssp             TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEE
T ss_pred             cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            012368999998644321      12   23458889998873

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.03  E-value=8.5e-11  Score=108.91  Aligned_cols=107  Identities=14%  Similarity=0.131  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      .+++.+++.+.+.++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|+++........+..+++.++++.     
T Consensus        94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~-----  168 (416)
T 4e2x_A           94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRT-----  168 (416)
T ss_dssp             HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHH-----
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccC-----
Confidence            456677777777788899999999999999999998999999999999999987611100111223333333322     


Q ss_pred             HHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcce
Q 023482          208 LFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSE  246 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~  246 (281)
                             .++||+|+++..+++..      ..+.++++++|.+..
T Consensus       169 -------~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i  206 (416)
T 4e2x_A          169 -------EGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVF  206 (416)
T ss_dssp             -------HCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEE
T ss_pred             -------CCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEE
Confidence                   37899999986654432      334578888876643

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.03  E-value=6.2e-10  Score=92.31  Aligned_cols=99  Identities=15%  Similarity=0.260  Sum_probs=66.5

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccc---cc-------
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR---SH-------  204 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~---d~-------  204 (281)
                      +.++.+|||+|||+|.++..+++.    +.+|+|+|+++..         ...+++++++|+.+.+..   ..       
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~   90 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN   90 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------CCTTCEEEECCTTTTSSCCC----------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------CCCCceEEEccccchhhhhhcccccccccc
Confidence            356789999999999999999986    3699999999831         124799999999886510   00       


Q ss_pred             ---hhhHHHhhcCCCCccEEEEcCCCccc----H-------------HHHHHhccCCCCcce
Q 023482          205 ---MLSLFERRKSSSGFAKVVANIPFNIS----T-------------DVIKQLLPMGDIFSE  246 (281)
Q Consensus       205 ---~~d~v~~~~~~~~~d~Vi~n~P~~~~----~-------------~~~~~ll~~~~~~~~  246 (281)
                         ..+.+........||+|+++.++++.    .             ..+.++++++|.+..
T Consensus        91 ~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~  152 (201)
T 2plw_A           91 NNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV  152 (201)
T ss_dssp             -CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence               00000000123689999999766542    1             124578888887643

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.01  E-value=2.6e-10  Score=106.90  Aligned_cols=94  Identities=16%  Similarity=0.140  Sum_probs=76.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~  197 (281)
                      ++.+......+...+.+.++.+|||+|||+|..+..+++.   .++|+|+|+++.+++.+++++.+.+  ++.++++|+.
T Consensus        87 ~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~  166 (456)
T 3m4x_A           87 EYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPA  166 (456)
T ss_dssp             CEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHH
T ss_pred             EEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHH
Confidence            4444444555666778888999999999999999999986   3699999999999999999987654  8999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCC
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~  227 (281)
                      +++.           ...+.||+|+.|+|+
T Consensus       167 ~l~~-----------~~~~~FD~Il~DaPC  185 (456)
T 3m4x_A          167 ELVP-----------HFSGFFDRIVVDAPC  185 (456)
T ss_dssp             HHHH-----------HHTTCEEEEEEECCC
T ss_pred             Hhhh-----------hccccCCEEEECCCC
Confidence            7641           123689999999996

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.01  E-value=7.9e-10  Score=97.54  Aligned_cols=95  Identities=18%  Similarity=0.219  Sum_probs=72.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHH
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      ..++.+|||||||+|..+..+++.  ..+|+++|+|+.+++.|++++..      .++++++.+|+.+...         
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~---------  146 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE---------  146 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH---------
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHH---------
Confidence            345689999999999999999987  46999999999999999999864      2489999999977421         


Q ss_pred             hhcCCCCccEEEEcCCCcc--c-----H---HHHHHhccCCCCc
Q 023482          211 RRKSSSGFAKVVANIPFNI--S-----T---DVIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~--~-----~---~~~~~ll~~~~~~  244 (281)
                        ...+.||+|+++.+...  .     .   ..+.++++++|.+
T Consensus       147 --~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~l  188 (283)
T 2i7c_A          147 --NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYC  188 (283)
T ss_dssp             --HCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEE
T ss_pred             --hCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEE
Confidence              12467999999764322  1     2   2335677777765

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.00  E-value=8.5e-10  Score=102.90  Aligned_cols=96  Identities=18%  Similarity=0.243  Sum_probs=79.9

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCcccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~  199 (281)
                      +..+......+...+.+.++.+|||+|||+|..+..+++..  .+|+|+|+++.+++.+++++...+ +++++++|+.++
T Consensus       228 ~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~  307 (429)
T 1sqg_A          228 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP  307 (429)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred             eEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhc
Confidence            55556667777778888899999999999999999999874  699999999999999999987665 789999999886


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +..          ...+.||.|+.|+|+.
T Consensus       308 ~~~----------~~~~~fD~Vl~D~Pcs  326 (429)
T 1sqg_A          308 SQW----------CGEQQFDRILLDAPCS  326 (429)
T ss_dssp             HHH----------HTTCCEEEEEEECCCC
T ss_pred             hhh----------cccCCCCEEEEeCCCC
Confidence            410          1236799999999985

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.95  E-value=2.8e-09  Score=89.59  Aligned_cols=98  Identities=20%  Similarity=0.234  Sum_probs=71.5

Q ss_pred             HHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      .+++.+. .++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++..     +++++|+.+...+         
T Consensus        24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~d~~~~~~~---------   88 (230)
T 3cc8_A           24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLD-----HVVLGDIETMDMP---------   88 (230)
T ss_dssp             HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSS-----EEEESCTTTCCCC---------
T ss_pred             HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCC-----cEEEcchhhcCCC---------
Confidence            3444444 567899999999999999999888899999999999999987653     6899999873221         


Q ss_pred             hcCCCCccEEEEcCCCccc---HHHH---HHhccCCCCcc
Q 023482          212 RKSSSGFAKVVANIPFNIS---TDVI---KQLLPMGDIFS  245 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~---~~~~---~~ll~~~~~~~  245 (281)
                       ...+.||+|+++..++..   ..++   .++++++|.+-
T Consensus        89 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~  127 (230)
T 3cc8_A           89 -YEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVIL  127 (230)
T ss_dssp             -SCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEE
T ss_pred             -CCCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEE
Confidence             223679999997655432   2233   35566666553

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.95  E-value=1.4e-10  Score=99.57  Aligned_cols=109  Identities=16%  Similarity=0.236  Sum_probs=66.6

Q ss_pred             HHHHHHHHhcCC-CCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEE-cCccccccccch
Q 023482          129 INDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQ-EDFVKCHIRSHM  205 (281)
Q Consensus       129 ~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~-gD~~~~~~~d~~  205 (281)
                      ....+++.+.+. .+.+|||||||+|.++..+++.++ +|+|+|+++.|++.|+++..   ++.... .++..+...+..
T Consensus        24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~---~~~~~~~~~~~~~~~~~~~  100 (232)
T 3opn_A           24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE---RVVVMEQFNFRNAVLADFE  100 (232)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT---TEEEECSCCGGGCCGGGCC
T ss_pred             HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc---cccccccceEEEeCHhHcC
Confidence            345666666554 456999999999999999999975 99999999999999877544   222211 122211111000


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcce
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSE  246 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~  246 (281)
                      ...    .....+|++++++  ...-+.+.++++++|.+-.
T Consensus       101 ~~~----~d~~~~D~v~~~l--~~~l~~i~rvLkpgG~lv~  135 (232)
T 3opn_A          101 QGR----PSFTSIDVSFISL--DLILPPLYEILEKNGEVAA  135 (232)
T ss_dssp             SCC----CSEEEECCSSSCG--GGTHHHHHHHSCTTCEEEE
T ss_pred             cCC----CCEEEEEEEhhhH--HHHHHHHHHhccCCCEEEE
Confidence            000    0002344444443  3444666789999987644

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.95  E-value=8.7e-10  Score=96.25  Aligned_cols=91  Identities=13%  Similarity=0.106  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHhhc
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      ..+.+|||||||+|.++..+++.+.+|+++|+|+.+++.|+++++.      .++++++.+|+.+..             
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-------------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-------------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-------------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-------------
Confidence            3567999999999999999887767999999999999999987643      248999999998752             


Q ss_pred             CCCCccEEEEcCCCcc-cHHHHHHhccCCCCcc
Q 023482          214 SSSGFAKVVANIPFNI-STDVIKQLLPMGDIFS  245 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~~-~~~~~~~ll~~~~~~~  245 (281)
                        +.||+|+++.+-.. .-..+.+.|+++|.+.
T Consensus       138 --~~fD~Ii~d~~dp~~~~~~~~~~L~pgG~lv  168 (262)
T 2cmg_A          138 --KKYDLIFCLQEPDIHRIDGLKRMLKEDGVFI  168 (262)
T ss_dssp             --CCEEEEEESSCCCHHHHHHHHTTEEEEEEEE
T ss_pred             --hhCCEEEECCCChHHHHHHHHHhcCCCcEEE
Confidence              46899998853221 2334556777777653

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.94  E-value=4.5e-09  Score=95.42  Aligned_cols=105  Identities=14%  Similarity=0.135  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR  202 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~  202 (281)
                      .....+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++++...   ++++++.+|+.+.+++
T Consensus       177 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  255 (359)
T 1x19_A          177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP  255 (359)
T ss_dssp             HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC
T ss_pred             hhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC
Confidence            34566777777778889999999999999999987  569999999 99999999987643   2699999999987642


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCc-ccH----HHH---HHhccCCCCcceE
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFN-IST----DVI---KQLLPMGDIFSEV  247 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~-~~~----~~~---~~ll~~~~~~~~~  247 (281)
                                    .+|+|+++..++ +..    .++   .+.++++|.+-..
T Consensus       256 --------------~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~  294 (359)
T 1x19_A          256 --------------EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL  294 (359)
T ss_dssp             --------------CCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             --------------CCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                          239998876654 332    222   3667778766333

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.94  E-value=3e-09  Score=96.87  Aligned_cols=101  Identities=21%  Similarity=0.229  Sum_probs=76.5

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccc
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~  204 (281)
                      ...+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|+++....   ++++++.+|+.+ +++  
T Consensus       171 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~--  246 (374)
T 1qzz_A          171 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP--  246 (374)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS--
T ss_pred             HHHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC--
Confidence            345666666677889999999999999999987  569999999 99999999987654   389999999976 321  


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCc-ccHH----HH---HHhccCCCCcc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFN-ISTD----VI---KQLLPMGDIFS  245 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~-~~~~----~~---~~ll~~~~~~~  245 (281)
                                 ..||+|+++..++ +..+    ++   .++++++|.+-
T Consensus       247 -----------~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~  284 (374)
T 1qzz_A          247 -----------VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLL  284 (374)
T ss_dssp             -----------CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             -----------CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence                       2489999976654 3332    22   36667776553

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.92  E-value=4.6e-09  Score=94.09  Aligned_cols=102  Identities=11%  Similarity=0.139  Sum_probs=77.0

Q ss_pred             HHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcccccc
Q 023482          129 INDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHI  201 (281)
Q Consensus       129 ~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~  201 (281)
                      ....+++.+..  .++.+|||+|||+|.++..+++.  +.+++++|++ .+++.|+++....   ++++++.+|+.+.++
T Consensus       151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  229 (335)
T 2r3s_A          151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY  229 (335)
T ss_dssp             HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC
T ss_pred             hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC
Confidence            44566667766  67789999999999999999987  6799999999 9999999987543   369999999988654


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcCCCc-ccHH----HH---HHhccCCCCc
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANIPFN-ISTD----VI---KQLLPMGDIF  244 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~-~~~~----~~---~~ll~~~~~~  244 (281)
                      +             +.||+|+++..++ +..+    ++   .++++++|.+
T Consensus       230 ~-------------~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l  267 (335)
T 2r3s_A          230 G-------------NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKV  267 (335)
T ss_dssp             C-------------SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             C-------------CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEE
Confidence            2             3499999965543 3322    22   3556666644

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.92  E-value=7.6e-09  Score=90.42  Aligned_cols=94  Identities=15%  Similarity=0.245  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchh
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~  206 (281)
                      +-+.+.+++.+.+.++..++|.+||.|..+..+++.+++|+|+|.|+.+++.|++ +.. ++++++++|+.+++.     
T Consensus         8 pVLl~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f~~l~~-----   80 (285)
T 1wg8_A            8 PVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL-PGLTVVQGNFRHLKR-----   80 (285)
T ss_dssp             CTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC-TTEEEEESCGGGHHH-----
T ss_pred             hHHHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc-CCEEEEECCcchHHH-----
Confidence            3457788888888889999999999999999999988899999999999999999 765 699999999998752     


Q ss_pred             hHHHhhcCCCCccEEEEcCCCcc
Q 023482          207 SLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                       .+.. ...+.+|.|+.++.+..
T Consensus        81 -~L~~-~g~~~vDgIL~DLGvSS  101 (285)
T 1wg8_A           81 -HLAA-LGVERVDGILADLGVSS  101 (285)
T ss_dssp             -HHHH-TTCSCEEEEEEECSCCH
T ss_pred             -HHHH-cCCCCcCEEEeCCcccc
Confidence             1111 12257999999988764

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.92  E-value=2.1e-09  Score=98.64  Aligned_cols=92  Identities=11%  Similarity=0.035  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCC---------------C--CeEEEEcCcccccc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI---------------D--QLKVLQEDFVKCHI  201 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~---------------~--~v~~~~gD~~~~~~  201 (281)
                      ++.+|||+|||+|..++.++.. + .+|+++|+++.+++.+++|++.+               +  +++++++|+.++..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            6789999999999999999987 3 58999999999999999998755               3  49999999977531


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcCCCcccHHHHH---HhccCCCCc
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~---~ll~~~~~~  244 (281)
                                 .....||+|+.+||+. ..+++.   +++++++.+
T Consensus       127 -----------~~~~~fD~I~lDP~~~-~~~~l~~a~~~lk~gG~l  160 (378)
T 2dul_A          127 -----------ERHRYFHFIDLDPFGS-PMEFLDTALRSAKRRGIL  160 (378)
T ss_dssp             -----------HSTTCEEEEEECCSSC-CHHHHHHHHHHEEEEEEE
T ss_pred             -----------hccCCCCEEEeCCCCC-HHHHHHHHHHhcCCCCEE
Confidence                       1135799999887653 344443   556666643

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.92  E-value=1.3e-09  Score=96.07  Aligned_cols=103  Identities=16%  Similarity=0.215  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCCccHHHHHH----HHc--CCEE--EEEeCCHHHHHHHHHHhcCC---CCeEE--EEcCccccccccchh
Q 023482          140 QEGDIVLEIGPGTGSLTNVL----LNA--GATV--LAIEKDQHMVGLVRERFASI---DQLKV--LQEDFVKCHIRSHML  206 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~l----a~~--~~~v--~gvD~s~~~l~~a~~~~~~~---~~v~~--~~gD~~~~~~~d~~~  206 (281)
                      .++.+|||||||+|.++..+    +..  +..|  +|+|+|++|++.|+++....   .++++  ..+++.+++..    
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~----  126 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSR----  126 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHH----
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhh----
Confidence            45679999999999876543    332  3444  99999999999999987643   35544  45665543210    


Q ss_pred             hHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceEE
Q 023482          207 SLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~~  248 (281)
                       +. .-...++||+|+++.-+++..      ..+.++|++||.+....
T Consensus       127 -~~-~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          127 -ML-EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             -HH-TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -hc-cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence             00 000236799999986655432      33458888988775543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.90  E-value=3e-09  Score=89.64  Aligned_cols=85  Identities=19%  Similarity=0.237  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEE
Q 023482          142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~V  221 (281)
                      +.+|||+|||+|.++..++..    +|+|+++.+++.++++     +++++++|+.++++.            .+.||+|
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~------------~~~fD~v  106 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR-----GVFVLKGTAENLPLK------------DESFDFA  106 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-----TCEEEECBTTBCCSC------------TTCEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-----CCEEEEcccccCCCC------------CCCeeEE
Confidence            779999999999999988765    9999999999999886     689999999887743            3679999


Q ss_pred             EEcCCCccc---H---HHHHHhccCCCCcceE
Q 023482          222 VANIPFNIS---T---DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       222 i~n~P~~~~---~---~~~~~ll~~~~~~~~~  247 (281)
                      +++..++..   .   ..+.++++++|.+...
T Consensus       107 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~  138 (219)
T 1vlm_A          107 LMVTTICFVDDPERALKEAYRILKKGGYLIVG  138 (219)
T ss_dssp             EEESCGGGSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcchHhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence            997655432   2   2334677777766443

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.89  E-value=1.3e-08  Score=92.78  Aligned_cols=93  Identities=14%  Similarity=0.237  Sum_probs=72.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccc--ccccchhhHHHhh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC--HIRSHMLSLFERR  212 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~--~~~d~~~d~v~~~  212 (281)
                      ....+|||||||+|.++..+++.  +.+++++|+ +.+++.|+++....+   +++++.+|+.+.  |++          
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p----------  246 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP----------  246 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC----------
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC----------
Confidence            35679999999999999999985  569999999 999999999987653   799999999875  221          


Q ss_pred             cCCCCccEEEEcCCCc-ccHH----H---HHHhccCCCCcce
Q 023482          213 KSSSGFAKVVANIPFN-ISTD----V---IKQLLPMGDIFSE  246 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~-~~~~----~---~~~ll~~~~~~~~  246 (281)
                         +.||+|+....++ +..+    +   +.+.+++||.+..
T Consensus       247 ---~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i  285 (363)
T 3dp7_A          247 ---TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYI  285 (363)
T ss_dssp             ---CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             ---CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence               5789999865553 4332    2   2366788886643

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.89  E-value=4.6e-10  Score=98.76  Aligned_cols=99  Identities=17%  Similarity=0.182  Sum_probs=69.1

Q ss_pred             HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---CCC-CeEEE--EcCccccccccc
Q 023482          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA---SID-QLKVL--QEDFVKCHIRSH  204 (281)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~---~~~-~v~~~--~gD~~~~~~~d~  204 (281)
                      ..+.+...+.++.+|||+|||+|.++..+++. .+|+|||+++ |+..++++..   ..+ +++++  ++|+.+++    
T Consensus        72 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~----  145 (276)
T 2wa2_A           72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME----  145 (276)
T ss_dssp             HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC----
T ss_pred             HHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC----
Confidence            44444444557889999999999999999998 7999999998 5433322211   112 78999  99998864    


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCcc------------cHHHHHHhccCCC--Ccc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNI------------STDVIKQLLPMGD--IFS  245 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~------------~~~~~~~ll~~~~--~~~  245 (281)
                                .+.||+|+++.....            .-..+.++++++|  .|.
T Consensus       146 ----------~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v  190 (276)
T 2wa2_A          146 ----------PFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFC  190 (276)
T ss_dssp             ----------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEE
T ss_pred             ----------CCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEE
Confidence                      267999999866211            1123457788888  553

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.87  E-value=1.9e-08  Score=91.74  Aligned_cols=104  Identities=22%  Similarity=0.312  Sum_probs=78.2

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccc
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~  204 (281)
                      ...+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++++...   ++++++.+|+.+ +++  
T Consensus       191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p--  266 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIP--  266 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCC--
T ss_pred             HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CCC--
Confidence            455666666777889999999999999999987  569999999 99999999987643   489999999983 321  


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCc-ccHH----HH---HHhccCCCCcceEE
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFN-ISTD----VI---KQLLPMGDIFSEVV  248 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~-~~~~----~~---~~ll~~~~~~~~~~  248 (281)
                                 ..||+|++...++ +..+    ++   .+.+++++.+-...
T Consensus       267 -----------~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          267 -----------DGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             -----------SSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             -----------CCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence                       3689999865543 3332    33   35667777664433

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.87  E-value=4.9e-09  Score=94.75  Aligned_cols=103  Identities=14%  Similarity=0.192  Sum_probs=76.2

Q ss_pred             HHHHHhcCCC-CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccch
Q 023482          132 QLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       132 ~l~~~l~~~~-~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~  205 (281)
                      .+++.+...+ +.+|||||||+|.++..+++.  +.+++++|+ +.+++.|+++....+   +++++.+|+.+.+.    
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----  243 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN----  243 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG----
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc----
Confidence            4555555556 789999999999999999987  569999999 889999998876543   79999999988641    


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCc-ccH----HHH---HHhccCCCCcce
Q 023482          206 LSLFERRKSSSGFAKVVANIPFN-IST----DVI---KQLLPMGDIFSE  246 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~-~~~----~~~---~~ll~~~~~~~~  246 (281)
                             ..++.||+|+++..++ +..    .++   .+.++++|.+-.
T Consensus       244 -------~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i  285 (352)
T 3mcz_A          244 -------FEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLI  285 (352)
T ss_dssp             -------GTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             -------cCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence                   0235699999976554 333    233   355667665533

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.86  E-value=6.7e-09  Score=90.90  Aligned_cols=117  Identities=15%  Similarity=0.191  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHhcCC-CCCEEEEEcCCc--cHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccc
Q 023482          127 SEINDQLAAAAAVQ-EGDIVLEIGPGT--GSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK  198 (281)
Q Consensus       127 ~~~~~~l~~~l~~~-~~~~VLDiGcG~--G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~  198 (281)
                      +.+..+.+..+... ...+|||||||+  +..+..+++.   +++|++||.|+.|++.|++++...  ++++++++|+.+
T Consensus        63 r~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~  142 (277)
T 3giw_A           63 RDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLD  142 (277)
T ss_dssp             HHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTC
T ss_pred             HHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccC
Confidence            44555666666532 346899999997  3344555443   679999999999999999998764  379999999988


Q ss_pred             ccc------ccchhhHHHhhcCCCCccEEEEcCCCcccH------HHHHH---hccCCCCcceEEEe
Q 023482          199 CHI------RSHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQ---LLPMGDIFSEVVLL  250 (281)
Q Consensus       199 ~~~------~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~---ll~~~~~~~~~~~~  250 (281)
                      .+.      .+..+|+       +....|++|.-+++..      .++.+   .+++|+.+....+.
T Consensus       143 ~~~~l~~~~~~~~~D~-------~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          143 PASILDAPELRDTLDL-------TRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             HHHHHTCHHHHTTCCT-------TSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             hhhhhcccccccccCc-------CCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence            631      0122222       2233677886665443      34544   47888887555443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.86  E-value=5.6e-10  Score=97.63  Aligned_cols=97  Identities=9%  Similarity=0.047  Sum_probs=68.2

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---CCC-CeEEE--EcCcccccccc
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA---SID-QLKVL--QEDFVKCHIRS  203 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~---~~~-~v~~~--~gD~~~~~~~d  203 (281)
                      ...+.+...+.++.+|||+|||+|.++..+++. .+|+|||+++ |+..+++...   ..+ ++.++  ++|+.+++   
T Consensus        63 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~---  137 (265)
T 2oxt_A           63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP---  137 (265)
T ss_dssp             HHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC---
T ss_pred             HHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC---
Confidence            445555545567889999999999999999988 7999999998 5433221111   112 78999  99998864   


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCcc------------cHHHHHHhccCCC
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNI------------STDVIKQLLPMGD  242 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~------------~~~~~~~ll~~~~  242 (281)
                                 ...||+|+++.....            .-..+.++++++|
T Consensus       138 -----------~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG  177 (265)
T 2oxt_A          138 -----------VERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNP  177 (265)
T ss_dssp             -----------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             -----------CCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCC
Confidence                       267999999866211            1133457788888

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.84  E-value=4e-09  Score=97.08  Aligned_cols=93  Identities=14%  Similarity=0.101  Sum_probs=72.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHhcCCC--C--eEEEEcCcccccc-ccchhhHHHh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHI-RSHMLSLFER  211 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~--~--v~~~~gD~~~~~~-~d~~~d~v~~  211 (281)
                      .++.+|||++||+|.+++.++..  + .+|+++|+++.+++.+++|++.++  +  ++++++|+.++.. .         
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~---------  121 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE---------  121 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC---------
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh---------
Confidence            35789999999999999999985  4 489999999999999999998664  3  9999999977521 0         


Q ss_pred             hcCCCCccEEEEcCCCcccHHHHH---HhccCCCCc
Q 023482          212 RKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~~~~~---~ll~~~~~~  244 (281)
                       . ...||+|+.|| |....+++.   +++++++.+
T Consensus       122 -~-~~~fD~V~lDP-~g~~~~~l~~a~~~Lk~gGll  154 (392)
T 3axs_A          122 -W-GFGFDYVDLDP-FGTPVPFIESVALSMKRGGIL  154 (392)
T ss_dssp             -C-SSCEEEEEECC-SSCCHHHHHHHHHHEEEEEEE
T ss_pred             -h-CCCCcEEEECC-CcCHHHHHHHHHHHhCCCCEE
Confidence             1 25799999998 554444544   455666543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.84  E-value=8.2e-09  Score=93.53  Aligned_cols=99  Identities=18%  Similarity=0.275  Sum_probs=74.6

Q ss_pred             HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccch
Q 023482          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~  205 (281)
                      ..+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++++...   ++++++.+|+.+ +++   
T Consensus       173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~---  247 (360)
T 1tw3_A          173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP---  247 (360)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS---
T ss_pred             HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCC---
Confidence            45566667777889999999999999999987  469999999 99999999987654   389999999976 221   


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCc-ccHH----HH---HHhccCCCCc
Q 023482          206 LSLFERRKSSSGFAKVVANIPFN-ISTD----VI---KQLLPMGDIF  244 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~-~~~~----~~---~~ll~~~~~~  244 (281)
                                ..||+|+++..++ +..+    ++   .++++++|.+
T Consensus       248 ----------~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l  284 (360)
T 1tw3_A          248 ----------RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRI  284 (360)
T ss_dssp             ----------SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEE
T ss_pred             ----------CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEE
Confidence                      3489999876653 3332    23   3555666654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.84  E-value=8.3e-09  Score=92.54  Aligned_cols=102  Identities=13%  Similarity=0.291  Sum_probs=77.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d  203 (281)
                      ....+++.+...+ .+|||+|||+|..+..+++.  +.+++++|+ +.+++.|++++...   ++++++.+|+.+ +++ 
T Consensus       156 ~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-  231 (334)
T 2ip2_A          156 AFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-  231 (334)
T ss_dssp             HHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-
T ss_pred             HHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-
Confidence            4456666666666 89999999999999999987  569999999 99999999887542   489999999987 431 


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCc-ccHH----H---HHHhccCCCCcce
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFN-ISTD----V---IKQLLPMGDIFSE  246 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~-~~~~----~---~~~ll~~~~~~~~  246 (281)
                                  +.||+|+++..++ +..+    +   +.+.++++|.+-.
T Consensus       232 ------------~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i  270 (334)
T 2ip2_A          232 ------------SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVV  270 (334)
T ss_dssp             ------------SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             ------------CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence                        5689999976654 3332    2   2366788876533

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.83  E-value=6.6e-09  Score=85.59  Aligned_cols=95  Identities=17%  Similarity=0.264  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc-C----------CEEEEEeCCHHHHHHHHHHhcCCCCeEEE-EcCccccccccchh
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA-G----------ATVLAIEKDQHMVGLVRERFASIDQLKVL-QEDFVKCHIRSHML  206 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~-~----------~~v~gvD~s~~~l~~a~~~~~~~~~v~~~-~gD~~~~~~~d~~~  206 (281)
                      +.++.+|||+|||+|.++..+++. +          .+|+|+|+++..         ...+++++ .+|+.+.+..+...
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~~~~~~~~~   90 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTDPRTSQRIL   90 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCCHHHHHHHH
Confidence            457789999999999999999987 3          799999999832         12478999 99987654321111


Q ss_pred             hHHHhhcCCCCccEEEEcCCCcc-----------------cHHHHHHhccCCCCcce
Q 023482          207 SLFERRKSSSGFAKVVANIPFNI-----------------STDVIKQLLPMGDIFSE  246 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~~-----------------~~~~~~~ll~~~~~~~~  246 (281)
                      +.    .....||+|+++.+++.                 .-..+.++++++|.+..
T Consensus        91 ~~----~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~  143 (196)
T 2nyu_A           91 EV----LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLC  143 (196)
T ss_dssp             HH----SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             Hh----cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            11    12357999999875432                 01123477788887643

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.83  E-value=1.2e-09  Score=97.34  Aligned_cols=97  Identities=10%  Similarity=0.137  Sum_probs=67.1

Q ss_pred             HHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeC----CHHHHHHHHHHhcCC--CCeEEEEc-Cccccccccch
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK----DQHMVGLVRERFASI--DQLKVLQE-DFVKCHIRSHM  205 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~----s~~~l~~a~~~~~~~--~~v~~~~g-D~~~~~~~d~~  205 (281)
                      +.+...+.++.+|||+|||+|.++..+++. ++|+|||+    ++.+++.+.  ....  ++++++++ |+.+++     
T Consensus        74 i~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~-----  145 (305)
T 2p41_A           74 FVERNLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP-----  145 (305)
T ss_dssp             HHHTTSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC-----
T ss_pred             HHHcCCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC-----
Confidence            344333456789999999999999999988 68999999    554432111  1112  37999999 888764     


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCc---c---------cHHHHHHhccCCCCcce
Q 023482          206 LSLFERRKSSSGFAKVVANIPFN---I---------STDVIKQLLPMGDIFSE  246 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~---~---------~~~~~~~ll~~~~~~~~  246 (281)
                               ...||+|+++.+++   +         .-..+.+++++||.|..
T Consensus       146 ---------~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~  189 (305)
T 2p41_A          146 ---------PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV  189 (305)
T ss_dssp             ---------CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             ---------cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence                     25799999987653   1         11224578899997644

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.81  E-value=1e-08  Score=92.03  Aligned_cols=94  Identities=17%  Similarity=0.245  Sum_probs=70.9

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhh
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      ...+..+|||||||+|.++..+++.  +.+++++|+ +.+++.|++++...   ++++++.+|+.+ +++          
T Consensus       166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p----------  233 (332)
T 3i53_A          166 DWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLP----------  233 (332)
T ss_dssp             CCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCC----------
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCC----------
Confidence            3345679999999999999999986  569999999 99999999887643   489999999973 321          


Q ss_pred             cCCCCccEEEEcCCCc-ccHH----HH---HHhccCCCCcce
Q 023482          213 KSSSGFAKVVANIPFN-ISTD----VI---KQLLPMGDIFSE  246 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~-~~~~----~~---~~ll~~~~~~~~  246 (281)
                         ..||+|++...++ +..+    ++   .+.+++||.+-.
T Consensus       234 ---~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i  272 (332)
T 3i53_A          234 ---AGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLV  272 (332)
T ss_dssp             ---CSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred             ---CCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence               2689999865553 4332    22   366678877643

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.81  E-value=9.8e-09  Score=90.13  Aligned_cols=74  Identities=15%  Similarity=0.188  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCCccH----HHHHHHHc-C-----CEEEEEeCCHHHHHHHHHHhc--------------------C---C-
Q 023482          141 EGDIVLEIGPGTGS----LTNVLLNA-G-----ATVLAIEKDQHMVGLVRERFA--------------------S---I-  186 (281)
Q Consensus       141 ~~~~VLDiGcG~G~----~t~~la~~-~-----~~v~gvD~s~~~l~~a~~~~~--------------------~---~-  186 (281)
                      ++.+|||+|||||.    +++.+++. +     .+|+|+|+|+.|++.|+++.-                    .   . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            34689999999998    66666664 2     599999999999999998641                    0   1 


Q ss_pred             ---------CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC
Q 023482          187 ---------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       187 ---------~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                               .+|+|.++|+.+.+++           ..+.||+|++..
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~-----------~~~~fDlI~crn  221 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYN-----------VPGPFDAIFCRN  221 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCC-----------CCCCEEEEEECS
T ss_pred             ceeechhhcccCeEEecccCCCCCC-----------cCCCeeEEEECC
Confidence                     2699999999885542           126799999953

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.80  E-value=1.3e-08  Score=87.11  Aligned_cols=74  Identities=14%  Similarity=0.029  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      .++.+|||||||+|.++..+. .+.+++|+|+|+.+++.++.+....+ +.++.++|....+++             +.+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-------------~~~  169 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-------------EAG  169 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-------------CBC
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-------------CCc
Confidence            457799999999999999888 66799999999999999999986554 889999999887643             578


Q ss_pred             cEEEEcCCC
Q 023482          219 AKVVANIPF  227 (281)
Q Consensus       219 d~Vi~n~P~  227 (281)
                      |+|+++.-+
T Consensus       170 DvvLllk~l  178 (253)
T 3frh_A          170 DLALIFKLL  178 (253)
T ss_dssp             SEEEEESCH
T ss_pred             chHHHHHHH
Confidence            999988544

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.77  E-value=1.2e-08  Score=80.27  Aligned_cols=84  Identities=13%  Similarity=0.294  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCcc-HHHHHHHH-cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccccccc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTG-SLTNVLLN-AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G-~~t~~la~-~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d  203 (281)
                      ...+.+++.+...  ++.+|||||||.| ..+..|++ .+..|+++|+++.+++             +++.|+.+-..  
T Consensus        22 ~e~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~-------------~v~dDiF~P~~--   84 (153)
T 2k4m_A           22 WNDLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG-------------IVRDDITSPRM--   84 (153)
T ss_dssp             HHHHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT-------------EECCCSSSCCH--
T ss_pred             HHHHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc-------------eEEccCCCCcc--
Confidence            3455666666654  4579999999999 59999997 7899999999998876             78899887332  


Q ss_pred             chhhHHHhhcCCCCccEEEE-cCCCcccHHHHH
Q 023482          204 HMLSLFERRKSSSGFAKVVA-NIPFNISTDVIK  235 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~-n~P~~~~~~~~~  235 (281)
                         ++      ...||+|.+ |||.....++++
T Consensus        85 ---~~------Y~~~DLIYsirPP~El~~~i~~  108 (153)
T 2k4m_A           85 ---EI------YRGAALIYSIRPPAEIHSSLMR  108 (153)
T ss_dssp             ---HH------HTTEEEEEEESCCTTTHHHHHH
T ss_pred             ---cc------cCCcCEEEEcCCCHHHHHHHHH
Confidence               11      147999965 899888888776

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.75  E-value=1.1e-08  Score=93.81  Aligned_cols=103  Identities=13%  Similarity=0.121  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCC------ccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPG------TGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG------~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~  198 (281)
                      ...+.++..+.. ++.+|||||||      +|..+..+++.   +++|+|||+++.|.       ....+++++++|+.+
T Consensus       204 ~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~~~rI~fv~GDa~d  275 (419)
T 3sso_A          204 PHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VDELRIRTIQGDQND  275 (419)
T ss_dssp             HHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GCBTTEEEEECCTTC
T ss_pred             HHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hcCCCcEEEEecccc
Confidence            445556655543 46799999999      77777777764   67999999999983       123599999999999


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcccH-----HHHHHhccCCCCc
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-----DVIKQLLPMGDIF  244 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-----~~~~~ll~~~~~~  244 (281)
                      +++.+...      ...+.||+|+++.-..+..     ..+.++|++||.+
T Consensus       276 lpf~~~l~------~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvl  320 (419)
T 3sso_A          276 AEFLDRIA------RRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLY  320 (419)
T ss_dssp             HHHHHHHH------HHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEE
T ss_pred             cchhhhhh------cccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEE
Confidence            87642111      0127899999975432211     2234667777655

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.75  E-value=8.6e-08  Score=80.17  Aligned_cols=118  Identities=14%  Similarity=0.166  Sum_probs=79.1

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC-----CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~-----~v~~~~gD~  196 (281)
                      ....+...+.+...+  .+.++|||+||  |++|+.+++. +++|++||.+++..+.|++++++.+     +|+++.||+
T Consensus        14 ~~v~~~~~~~L~~~l--~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda   89 (202)
T 3cvo_A           14 LTMPPAEAEALRMAY--EEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDI   89 (202)
T ss_dssp             CCSCHHHHHHHHHHH--HHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCC
T ss_pred             ccCCHHHHHHHHHHh--hCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCc
Confidence            345555555555544  36789999998  5899999987 6899999999999999999987543     799999997


Q ss_pred             ccc-----ccccchhhHHHh----h---cCCCCccEEEEcCCCc-ccHHHHHHhccCCCCc
Q 023482          197 VKC-----HIRSHMLSLFER----R---KSSSGFAKVVANIPFN-ISTDVIKQLLPMGDIF  244 (281)
Q Consensus       197 ~~~-----~~~d~~~d~v~~----~---~~~~~~d~Vi~n~P~~-~~~~~~~~ll~~~~~~  244 (281)
                      .+.     |.....++.+..    +   ...+.||+||.+-.+. ...+....++++|+.+
T Consensus        90 ~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~I  150 (202)
T 3cvo_A           90 GPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTL  150 (202)
T ss_dssp             SSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEE
T ss_pred             hhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEE
Confidence            653     111111111110    0   1236799999987643 2223334677777655

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.72  E-value=1.7e-08  Score=87.28  Aligned_cols=77  Identities=12%  Similarity=0.197  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++.+|||||||+|.++..++..  .++|+++|+|+.+++.++.++..++ +.++.+.|...-+.             .+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p-------------~~  197 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRL-------------DE  197 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCC-------------CS
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCC-------------CC
Confidence            34679999999999999999876  5699999999999999999998765 78999999876543             37


Q ss_pred             CccEEEEcCCCcc
Q 023482          217 GFAKVVANIPFNI  229 (281)
Q Consensus       217 ~~d~Vi~n~P~~~  229 (281)
                      .+|+++++.-++.
T Consensus       198 ~~DvaL~lkti~~  210 (281)
T 3lcv_B          198 PADVTLLLKTLPC  210 (281)
T ss_dssp             CCSEEEETTCHHH
T ss_pred             CcchHHHHHHHHH
Confidence            7999999876543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.71  E-value=9.8e-09  Score=85.97  Aligned_cols=85  Identities=13%  Similarity=0.188  Sum_probs=62.0

Q ss_pred             HHHHHhc-CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHH
Q 023482          132 QLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       132 ~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      .+++.+. ..++.+|||||||+|.++..+   +.+|+|+|+++.             +++++++|+.++++.        
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~-------------~~~~~~~d~~~~~~~--------  112 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSI---RNPVHCFDLASL-------------DPRVTVCDMAQVPLE--------  112 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS-------------STTEEESCTTSCSCC--------
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC-------------CceEEEeccccCCCC--------
Confidence            3444443 346679999999999999877   368999999987             467899999987753        


Q ss_pred             hhcCCCCccEEEEcCCCcccH-----HHHHHhccCCCCc
Q 023482          211 RRKSSSGFAKVVANIPFNIST-----DVIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~~-----~~~~~ll~~~~~~  244 (281)
                          .+.||+|+++..+++..     ..+.++++++|.+
T Consensus       113 ----~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l  147 (215)
T 2zfu_A          113 ----DESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLL  147 (215)
T ss_dssp             ----TTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEE
T ss_pred             ----CCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEE
Confidence                36799999987665321     2234677777765

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.61  E-value=7.3e-08  Score=87.11  Aligned_cols=98  Identities=18%  Similarity=0.307  Sum_probs=68.6

Q ss_pred             HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccch
Q 023482          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~  205 (281)
                      ..+++.+...++.+|||||||+|.++..+++.  +.+++++|+ +.++.  +++...   .++++++.+|+.+ +     
T Consensus       174 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~-----  244 (348)
T 3lst_A          174 LILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-E-----  244 (348)
T ss_dssp             HHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-C-----
T ss_pred             HHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-C-----
Confidence            45666667777889999999999999999986  458999999 45554  322221   2479999999972 2     


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCc-ccHH----H---HHHhccCCCCcce
Q 023482          206 LSLFERRKSSSGFAKVVANIPFN-ISTD----V---IKQLLPMGDIFSE  246 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~-~~~~----~---~~~ll~~~~~~~~  246 (281)
                             . + .||+|+++..++ +..+    +   +.+.+++||.+-.
T Consensus       245 -------~-p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i  284 (348)
T 3lst_A          245 -------V-P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLV  284 (348)
T ss_dssp             -------C-C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             -------C-C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence                   1 2 689999876554 3332    2   2467788887643

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.59  E-value=1.4e-07  Score=86.02  Aligned_cols=97  Identities=7%  Similarity=0.134  Sum_probs=70.6

Q ss_pred             HHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482          131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       131 ~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ..++..+. ..++.+|||||||+|..+..+++.  ..+++++|+ +.+++.|++    .++++++.+|+.+ +++     
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~-----  266 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP----LSGIEHVGGDMFA-SVP-----  266 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT-CCC-----
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh----cCCCEEEeCCccc-CCC-----
Confidence            44555554 556789999999999999999987  458999999 999987764    2479999999987 532     


Q ss_pred             HHHhhcCCCCccEEEEcCCCc-ccHH----H---HHHhccCCCCcceE
Q 023482          208 LFERRKSSSGFAKVVANIPFN-ISTD----V---IKQLLPMGDIFSEV  247 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~-~~~~----~---~~~ll~~~~~~~~~  247 (281)
                              . ||+|+++..++ +..+    +   +.+.++++|.+-..
T Consensus       267 --------~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          267 --------Q-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             --------C-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------C-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                    2 89999876654 3332    2   23666777765433

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.58  E-value=1.1e-07  Score=86.70  Aligned_cols=96  Identities=11%  Similarity=0.240  Sum_probs=69.1

Q ss_pred             HHHHHhc-CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhH
Q 023482          132 QLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       132 ~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      .++..+. ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.|++    .++++++.+|+.+ +++      
T Consensus       193 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~p------  260 (368)
T 3reo_A          193 KILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA----FSGVEHLGGDMFD-GVP------  260 (368)
T ss_dssp             HHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT-CCC------
T ss_pred             HHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh----cCCCEEEecCCCC-CCC------
Confidence            3444444 456689999999999999999986  569999999 888877653    2589999999987 542      


Q ss_pred             HHhhcCCCCccEEEEcCCCc-ccHH----HH---HHhccCCCCcceE
Q 023482          209 FERRKSSSGFAKVVANIPFN-ISTD----VI---KQLLPMGDIFSEV  247 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~~-~~~~----~~---~~ll~~~~~~~~~  247 (281)
                             .. |+|+....++ +..+    ++   .+.+++++.+...
T Consensus       261 -------~~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~  299 (368)
T 3reo_A          261 -------KG-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVA  299 (368)
T ss_dssp             -------CC-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             -------CC-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence                   22 8888876554 4332    22   3667888866433

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.54  E-value=2.3e-07  Score=84.51  Aligned_cols=98  Identities=13%  Similarity=0.225  Sum_probs=71.0

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchh
Q 023482          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       130 ~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~  206 (281)
                      ...++..+. ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.|++    .++++++.+|+.+ +++    
T Consensus       189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~p----  258 (364)
T 3p9c_A          189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----FPGVTHVGGDMFK-EVP----  258 (364)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT-CCC----
T ss_pred             HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----cCCeEEEeCCcCC-CCC----
Confidence            344555555 556789999999999999999986  569999999 888877653    2589999999987 643    


Q ss_pred             hHHHhhcCCCCccEEEEcCCCc-ccH----HHH---HHhccCCCCcceE
Q 023482          207 SLFERRKSSSGFAKVVANIPFN-IST----DVI---KQLLPMGDIFSEV  247 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~-~~~----~~~---~~ll~~~~~~~~~  247 (281)
                               .. |+|+....++ +..    .++   .+.+++++.+...
T Consensus       259 ---------~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          259 ---------SG-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLV  297 (364)
T ss_dssp             ---------CC-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             ---------CC-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence                     22 8888865553 433    222   3667888866443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.53  E-value=1.8e-07  Score=84.66  Aligned_cols=89  Identities=11%  Similarity=0.253  Sum_probs=66.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++    .++++++.+|+.+ ++              .
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~--------------p  245 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG----SNNLTYVGGDMFT-SI--------------P  245 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----BTTEEEEECCTTT-CC--------------C
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc----CCCcEEEeccccC-CC--------------C
Confidence            346679999999999999999987  569999999 999987764    2469999999976 43              1


Q ss_pred             CccEEEEcCCCc-ccHH----H---HHHhccC---CCCcceE
Q 023482          217 GFAKVVANIPFN-ISTD----V---IKQLLPM---GDIFSEV  247 (281)
Q Consensus       217 ~~d~Vi~n~P~~-~~~~----~---~~~ll~~---~~~~~~~  247 (281)
                      .||+|+++..++ +..+    +   +.+.+++   +|.+-..
T Consensus       246 ~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~  287 (352)
T 1fp2_A          246 NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII  287 (352)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            389999876654 3332    2   2366677   7765433

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.49  E-value=2.1e-07  Score=82.24  Aligned_cols=83  Identities=19%  Similarity=0.258  Sum_probs=59.2

Q ss_pred             cCCCCCEEEEEcC------CccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEE-EEcCccccccccchhh
Q 023482          138 AVQEGDIVLEIGP------GTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKV-LQEDFVKCHIRSHMLS  207 (281)
Q Consensus       138 ~~~~~~~VLDiGc------G~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~-~~gD~~~~~~~d~~~d  207 (281)
                      .+.++.+|||+||      |+|.  ..+++.   +++|+|+|+++.        +   .++++ +++|+.++++.     
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---~~v~~~i~gD~~~~~~~-----  121 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---SDADSTLIGDCATVHTA-----  121 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---CSSSEEEESCGGGCCCS-----
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---CCCEEEEECccccCCcc-----
Confidence            4567889999999      4476  334443   479999999998        1   37889 99999887542     


Q ss_pred             HHHhhcCCCCccEEEEcCCCcc-----------------cHHHHHHhccCCCCcce
Q 023482          208 LFERRKSSSGFAKVVANIPFNI-----------------STDVIKQLLPMGDIFSE  246 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~-----------------~~~~~~~ll~~~~~~~~  246 (281)
                              +.||+|++|++.+.                 .-..+.++|++||.|..
T Consensus       122 --------~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~  169 (290)
T 2xyq_A          122 --------NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV  169 (290)
T ss_dssp             --------SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             --------CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEE
Confidence                    57999999965332                 12334577888887643

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.47  E-value=8.9e-07  Score=80.26  Aligned_cols=100  Identities=13%  Similarity=0.230  Sum_probs=72.1

Q ss_pred             HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchh
Q 023482          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~  206 (281)
                      ..++.........+|+|||||+|.++..++++  +.+++.+|. |.+++.|+++....  ++|+++.+|+.+.+.     
T Consensus       169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~-----  242 (353)
T 4a6d_A          169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL-----  242 (353)
T ss_dssp             HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC-----
T ss_pred             HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC-----
Confidence            34455555566789999999999999999997  558888887 88999999887643  489999999987543     


Q ss_pred             hHHHhhcCCCCccEEEEc-CCCcccHH----HHH---HhccCCCCcc
Q 023482          207 SLFERRKSSSGFAKVVAN-IPFNISTD----VIK---QLLPMGDIFS  245 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n-~P~~~~~~----~~~---~ll~~~~~~~  245 (281)
                               ..+|+++.. .-..|..+    +++   +.+++++.+-
T Consensus       243 ---------~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~ll  280 (353)
T 4a6d_A          243 ---------PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGIL  280 (353)
T ss_dssp             ---------CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEE
T ss_pred             ---------CCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence                     345777764 44445543    233   4457777653

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.40  E-value=4.1e-07  Score=82.41  Aligned_cols=87  Identities=15%  Similarity=0.284  Sum_probs=65.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++    ..+++++.+|+.+ ++              ..
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~--------------~~  251 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----NENLNFVGGDMFK-SI--------------PS  251 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----CSSEEEEECCTTT-CC--------------CC
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----CCCcEEEeCccCC-CC--------------CC
Confidence            45679999999999999999987  458999999 788876654    2469999999987 53              24


Q ss_pred             ccEEEEcCCCc-ccH----HHH---HHhccC---CCCcce
Q 023482          218 FAKVVANIPFN-IST----DVI---KQLLPM---GDIFSE  246 (281)
Q Consensus       218 ~d~Vi~n~P~~-~~~----~~~---~~ll~~---~~~~~~  246 (281)
                      ||+|+++..++ +..    .++   .+.+++   ++.+-.
T Consensus       252 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i  291 (358)
T 1zg3_A          252 ADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVII  291 (358)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEE
T ss_pred             ceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence            89999987665 333    222   356677   776543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.34  E-value=2.6e-07  Score=74.85  Aligned_cols=85  Identities=13%  Similarity=0.147  Sum_probs=63.5

Q ss_pred             hcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +++.++.+|||+|||.              +++|+++.|++.|+++...  +++++++|+.++++..         ...+
T Consensus         8 ~g~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~--~~~~~~~d~~~~~~~~---------~~~~   62 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN--EGRVSVENIKQLLQSA---------HKES   62 (176)
T ss_dssp             TTCCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT--TSEEEEEEGGGGGGGC---------CCSS
T ss_pred             cCCCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc--CcEEEEechhcCcccc---------CCCC
Confidence            4567889999999996              2499999999999998753  5999999999887510         0236


Q ss_pred             CccEEEEcCCCccc----H---HHHHHhccCCCCcce
Q 023482          217 GFAKVVANIPFNIS----T---DVIKQLLPMGDIFSE  246 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~----~---~~~~~ll~~~~~~~~  246 (281)
                      .||+|+++..+++.    .   ..+.+++++||.+..
T Consensus        63 ~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~   99 (176)
T 2ld4_A           63 SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFL   99 (176)
T ss_dssp             CEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEE
T ss_pred             CEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEE
Confidence            89999997555433    2   334588888887644

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.30  E-value=1.6e-06  Score=76.74  Aligned_cols=61  Identities=28%  Similarity=0.345  Sum_probs=54.5

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~  185 (281)
                      ..+..+++.+++... .+++.|||++||+|..+..++..+.+++|+|+++.+++.|++++..
T Consensus       219 ~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          219 PFPLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             CSCHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence            356788888888876 5788999999999999999999999999999999999999998864

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.27  E-value=3.9e-06  Score=74.97  Aligned_cols=94  Identities=12%  Similarity=0.263  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d  203 (281)
                      +-+.+.+++.+.+.++..++|..||.|..+..+++.   .++|+|+|.|+.+++.|+ ++. .++++++++++.+++-  
T Consensus        43 pVLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~-~~Rv~lv~~nF~~l~~--  118 (347)
T 3tka_A           43 TVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID-DPRFSIIHGPFSALGE--  118 (347)
T ss_dssp             CTTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC-CTTEEEEESCGGGHHH--
T ss_pred             cccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc-CCcEEEEeCCHHHHHH--
Confidence            346677888888889999999999999999999986   359999999999999985 442 3589999999988742  


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCc
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                          .+......+.+|.|+.|+.++
T Consensus       119 ----~L~~~g~~~~vDgILfDLGVS  139 (347)
T 3tka_A          119 ----YVAERDLIGKIDGILLDLGVS  139 (347)
T ss_dssp             ----HHHHTTCTTCEEEEEEECSCC
T ss_pred             ----HHHhcCCCCcccEEEECCccC
Confidence                111101113689999998875

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.18  E-value=2.4e-06  Score=82.78  Aligned_cols=89  Identities=18%  Similarity=0.288  Sum_probs=61.0

Q ss_pred             CCEEEEEcCCccHHHHHHH---Hc-CC--EEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhh
Q 023482          142 GDIVLEIGPGTGSLTNVLL---NA-GA--TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la---~~-~~--~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      +..|||+|||+|.+....+   +. +.  +|+|||.++. ...|++....+   ++|++++||++++..+          
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~LP----------  426 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWVAP----------  426 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCCCS----------
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceeccCC----------
Confidence            3579999999999844443   33 22  7899999984 55566665543   3899999999998643          


Q ss_pred             cCCCCccEEEEcC----CCcccH-HHH---HHhccCCCCc
Q 023482          213 KSSSGFAKVVANI----PFNIST-DVI---KQLLPMGDIF  244 (281)
Q Consensus       213 ~~~~~~d~Vi~n~----P~~~~~-~~~---~~ll~~~~~~  244 (281)
                         .+.|+||+-.    -++... .++   +++|+++|.+
T Consensus       427 ---EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGim  463 (637)
T 4gqb_A          427 ---EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVS  463 (637)
T ss_dssp             ---SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred             ---cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEE
Confidence               6799999842    222222 222   4777777655

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.14  E-value=7.7e-06  Score=74.15  Aligned_cols=86  Identities=20%  Similarity=0.260  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      +.+|.+|||+||++|..|..+++++++|+|||+.+ |-.    .+...++|+++.+|+.+....            .+.+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~----~l~~~~~V~~~~~d~~~~~~~------------~~~~  271 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQ----SLMDTGQVTWLREDGFKFRPT------------RSNI  271 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCH----HHHTTTCEEEECSCTTTCCCC------------SSCE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cCh----hhccCCCeEEEeCccccccCC------------CCCc
Confidence            45789999999999999999999999999999763 222    222346999999999887632            3679


Q ss_pred             cEEEEcCCCcc--cHHHHHHhccCC
Q 023482          219 AKVVANIPFNI--STDVIKQLLPMG  241 (281)
Q Consensus       219 d~Vi~n~P~~~--~~~~~~~ll~~~  241 (281)
                      |.|++++-.+.  ....+.+++..+
T Consensus       272 D~vvsDm~~~p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          272 SWMVCDMVEKPAKVAALMAQWLVNG  296 (375)
T ss_dssp             EEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCCChHHhHHHHHHHHhcc
Confidence            99999865443  224455655544

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.13  E-value=1.5e-05  Score=70.32  Aligned_cols=95  Identities=21%  Similarity=0.278  Sum_probs=73.1

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC-------CCCeEEEEcCccccccccchhhHHH
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~-------~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      ..+++||-||-|.|..+..+++.  ..+|+.||+|+..++.+++.+..       .++++++.+|+.++--         
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~---------  152 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN---------  152 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS---------
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh---------
Confidence            45679999999999999999987  45999999999999999987642       2489999999988632         


Q ss_pred             hhcCCCCccEEEEcCCCc----------ccHHHHHHhccCCCCcc
Q 023482          211 RRKSSSGFAKVVANIPFN----------ISTDVIKQLLPMGDIFS  245 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~----------~~~~~~~~ll~~~~~~~  245 (281)
                        .....||+||.+.+-.          ..-..+++.|+++|.+.
T Consensus       153 --~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v  195 (294)
T 3o4f_A          153 --QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFV  195 (294)
T ss_dssp             --CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEE
T ss_pred             --hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEE
Confidence              3457899999875321          11245567777777663

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.08  E-value=3.9e-07  Score=79.63  Aligned_cols=81  Identities=11%  Similarity=-0.008  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      .+..+||+-+|+|.+++.+.+.+.+++.+|.++..++..++|+...++++++++|+...-..     +   ......||+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~-----l---~~~~~~fdL  162 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNA-----L---LPPPEKRGL  162 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHH-----H---CSCTTSCEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHH-----h---cCCCCCccE
Confidence            35568999999999999999877799999999999999999998766899999997653100     0   022346999


Q ss_pred             EEEcCCCcc
Q 023482          221 VVANIPFNI  229 (281)
Q Consensus       221 Vi~n~P~~~  229 (281)
                      |+.+|||..
T Consensus       163 VfiDPPYe~  171 (283)
T 2oo3_A          163 IFIDPSYER  171 (283)
T ss_dssp             EEECCCCCS
T ss_pred             EEECCCCCC
Confidence            999999984

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.06  E-value=5.2e-06  Score=75.40  Aligned_cols=96  Identities=23%  Similarity=0.301  Sum_probs=75.6

Q ss_pred             cccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCC--------CCeEE
Q 023482          122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--------DQLKV  191 (281)
Q Consensus       122 ~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~--------~~v~~  191 (281)
                      .|+.+..........+.+++|.+|||+++|.|.=|..|++.+  ..|+++|+++..++.+++++.+.        .++.+
T Consensus       129 d~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v  208 (359)
T 4fzv_A          129 EYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRV  208 (359)
T ss_dssp             SEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEE
T ss_pred             chhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEE
Confidence            344444455556667788999999999999999999998874  38999999999999998887532        37899


Q ss_pred             EEcCccccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       192 ~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      ...|+..++.           ...+.||.|+.+.|=.
T Consensus       209 ~~~D~~~~~~-----------~~~~~fD~VLlDaPCS  234 (359)
T 4fzv_A          209 TSWDGRKWGE-----------LEGDTYDRVLVDVPCT  234 (359)
T ss_dssp             ECCCGGGHHH-----------HSTTCEEEEEEECCCC
T ss_pred             EeCchhhcch-----------hccccCCEEEECCccC
Confidence            9999887642           2347899999998843

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.02  E-value=5.9e-06  Score=80.40  Aligned_cols=96  Identities=10%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             CCEEEEEcCCccHHHHHH---HH-cC-----------CEEEEEeCCHHHHHHHHHHhc-CC-CCeEEEEcCccccccccc
Q 023482          142 GDIVLEIGPGTGSLTNVL---LN-AG-----------ATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l---a~-~~-----------~~v~gvD~s~~~l~~a~~~~~-~~-~~v~~~~gD~~~~~~~d~  204 (281)
                      +..|||||||+|.+....   ++ .+           .+|+|||.++.++..++.... .. ++|+++++|++++.++..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            458999999999996432   21 12           299999999987766655443 22 379999999999864210


Q ss_pred             hhhHHHhhcCCCCccEEEEcCC-C----cccHHHH---HHhccCCCCc
Q 023482          205 MLSLFERRKSSSGFAKVVANIP-F----NISTDVI---KQLLPMGDIF  244 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P-~----~~~~~~~---~~ll~~~~~~  244 (281)
                      .       ....+.|+||+-+. +    ....+.+   .++|+++|.+
T Consensus       490 ~-------~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~  530 (745)
T 3ua3_A          490 D-------RGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS  530 (745)
T ss_dssp             H-------TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred             c-------CCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence            0       12478999999654 1    2222333   3777777755

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.02  E-value=3.5e-06  Score=73.07  Aligned_cols=97  Identities=16%  Similarity=0.080  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc-------C-------CEEEEEeCCH---HHHH-----------HHHHHhcC-------
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA-------G-------ATVLAIEKDQ---HMVG-----------LVRERFAS-------  185 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-------~-------~~v~gvD~s~---~~l~-----------~a~~~~~~-------  185 (281)
                      ++.+|||||+|+|+.++.+++.       .       .+++++|.+|   +.+.           .|++.+..       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4569999999999998886542       1       3899999886   4444           55555432       


Q ss_pred             -------C--CCeEEEEcCcccc-ccccchhhHHHhhcCCCCccEEEEcC--CCc----ccHH---HHHHhccCCCCcc
Q 023482          186 -------I--DQLKVLQEDFVKC-HIRSHMLSLFERRKSSSGFAKVVANI--PFN----ISTD---VIKQLLPMGDIFS  245 (281)
Q Consensus       186 -------~--~~v~~~~gD~~~~-~~~d~~~d~v~~~~~~~~~d~Vi~n~--P~~----~~~~---~~~~ll~~~~~~~  245 (281)
                             .  .+++++.||+.+. +..+.        .....||+|+.++  |-.    |..+   .+.+++++++.+.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~--------~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~  210 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDD--------SLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA  210 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCG--------GGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhccc--------ccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEE
Confidence                   1  2688999999873 32110        0013799999874  321    2333   3456777777653

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.00  E-value=1.9e-05  Score=68.36  Aligned_cols=61  Identities=15%  Similarity=0.221  Sum_probs=54.1

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~  185 (281)
                      ..+..+++.+++... .+++.|||.+||+|..+.+..+.+.+++|+|+++.+++.|++++..
T Consensus       196 ~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh
Confidence            455778888888765 6788999999999999999999999999999999999999999874

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.76  E-value=7.5e-05  Score=68.21  Aligned_cols=77  Identities=22%  Similarity=0.223  Sum_probs=61.2

Q ss_pred             CEEEEEcCCccHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEE
Q 023482          143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~V  221 (281)
                      -+++|+.||.|.++..+.+.|.+ |.++|+++.+++..+.|+.   +..++++|+.++...+    +.........+|+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~---~~~~~~~DI~~~~~~~----~~~~~~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP---RSLHVQEDVSLLNAEI----IKGFFKNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT---TSEEECCCGGGCCHHH----HHHHHCSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC---CCceEecChhhcCHHH----HHhhcccCCCeeEE
Confidence            47999999999999999998885 6699999999999998875   6788999999876432    11000134679999


Q ss_pred             EEcCC
Q 023482          222 VANIP  226 (281)
Q Consensus       222 i~n~P  226 (281)
                      ++.||
T Consensus        76 ~ggpP   80 (376)
T 3g7u_A           76 IGGPP   80 (376)
T ss_dssp             EECCC
T ss_pred             EecCC
Confidence            99998

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.70  E-value=3.5e-05  Score=69.49  Aligned_cols=74  Identities=20%  Similarity=0.312  Sum_probs=58.7

Q ss_pred             CEEEEEcCCccHHHHHHHHcC--C-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          143 DIVLEIGPGTGSLTNVLLNAG--A-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~--~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      .+|+|+.||+|.++..+...|  . .|.++|+++.+++..+.|+.   +..++++|+.++...+     +    ....+|
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~---~~~~~~~Di~~~~~~~-----~----~~~~~D   70 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---HTQLLAKTIEGITLEE-----F----DRLSFD   70 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---TSCEECSCGGGCCHHH-----H----HHHCCS
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc---ccccccCCHHHccHhH-----c----CcCCcC
Confidence            479999999999999999887  3 69999999999999999986   4457899998875321     1    012589


Q ss_pred             EEEEcCCCc
Q 023482          220 KVVANIPFN  228 (281)
Q Consensus       220 ~Vi~n~P~~  228 (281)
                      +|+++||.+
T Consensus        71 ~l~~gpPCq   79 (343)
T 1g55_A           71 MILMSPPCQ   79 (343)
T ss_dssp             EEEECCC--
T ss_pred             EEEEcCCCc
Confidence            999999943

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.68  E-value=0.00018  Score=64.42  Aligned_cols=74  Identities=18%  Similarity=0.232  Sum_probs=59.9

Q ss_pred             CCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          142 GDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      +.+++|+.||+|.++..+...|. .+.++|+++.+++..+.|+....     ++|+.++...+           ...+|+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~-----~~Di~~~~~~~-----------~~~~D~   74 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP-----EGDITQVNEKT-----------IPDHDI   74 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC-----BSCGGGSCGGG-----------SCCCSE
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC-----cCCHHHcCHhh-----------CCCCCE
Confidence            46899999999999999999887 58889999999999999986422     78988875321           245899


Q ss_pred             EEEcCCCcccH
Q 023482          221 VVANIPFNIST  231 (281)
Q Consensus       221 Vi~n~P~~~~~  231 (281)
                      |++.||.+-.+
T Consensus        75 l~~gpPCQ~fS   85 (327)
T 2c7p_A           75 LCAGFPCQAFS   85 (327)
T ss_dssp             EEEECCCTTTC
T ss_pred             EEECCCCCCcc
Confidence            99999986443

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.49  E-value=5.9e-05  Score=65.47  Aligned_cols=104  Identities=13%  Similarity=0.128  Sum_probs=62.6

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchh
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~  206 (281)
                      +..+.+...+.++.+|||+|||+|.++..++.. +. .++|+|+...+....... ...+ ++..+.+++....      
T Consensus        63 L~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~~ii~~~~~~dv~~------  135 (277)
T 3evf_A           63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGWNIITFKDKTDIHR------  135 (277)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTGGGEEEECSCCTTT------
T ss_pred             HHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCCCeEEEeccceehh------
Confidence            334444445567789999999999999988876 33 788898874431110000 0011 5555666654333      


Q ss_pred             hHHHhhcCCCCccEEEEcCCCc----ccH--------HHHHHhccCC-CCcce
Q 023482          207 SLFERRKSSSGFAKVVANIPFN----IST--------DVIKQLLPMG-DIFSE  246 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~----~~~--------~~~~~ll~~~-~~~~~  246 (281)
                            ..+..+|+|+++.-.+    +..        .+..++|+++ |.|..
T Consensus       136 ------l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~  182 (277)
T 3evf_A          136 ------LEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV  182 (277)
T ss_dssp             ------SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             ------cCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence                  2346799999986444    111        2234677777 76633

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.42  E-value=0.00043  Score=62.93  Aligned_cols=77  Identities=25%  Similarity=0.348  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC----------CCeEEEEcCccccccccchhhHH
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI----------DQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~----------~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      ++++||=||-|.|..+..+.+. ..+|+.||+|+..++.+++.+...          ++++++.+|+.++--.     ..
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~-----~~  279 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKR-----YA  279 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHH-----HH
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHh-----hh
Confidence            5679999999999999999886 459999999999999999986431          2689999998764210     00


Q ss_pred             HhhcCCCCccEEEEcC
Q 023482          210 ERRKSSSGFAKVVANI  225 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~  225 (281)
                         .....||+||.++
T Consensus       280 ---~~~~~yDvIIvDl  292 (381)
T 3c6k_A          280 ---KEGREFDYVINDL  292 (381)
T ss_dssp             ---HHTCCEEEEEEEC
T ss_pred             ---hccCceeEEEECC
Confidence               2346799999874

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.37  E-value=8.6e-05  Score=66.35  Aligned_cols=75  Identities=12%  Similarity=0.166  Sum_probs=60.2

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCcccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC  199 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~  199 (281)
                      ..+..+++.+++... .+++.|||..||+|..+.+....+.+.+|+|+++..++.+++++...+ ....++.|+.++
T Consensus       236 ~kp~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i  311 (323)
T 1boo_A          236 RFPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNISEEKITDIYNRI  311 (323)
T ss_dssp             CCCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            345678888887654 578899999999999999988889999999999999999999987553 344455555444

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.33  E-value=0.00068  Score=59.77  Aligned_cols=79  Identities=18%  Similarity=0.106  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGAT---VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~---v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ...+++|+.||.|.++..+.+.|.+   |.++|+++.+.+..+.|+.   +..++.+|+.++...+    +    ...+.
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~---~~~~~~~DI~~i~~~~----i----~~~~~   83 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ---GKIMYVGDVRSVTQKH----I----QEWGP   83 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT---TCEEEECCGGGCCHHH----H----HHTCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC---CCceeCCChHHccHHH----h----cccCC
Confidence            4458999999999999999988764   5999999999998888865   4568899999876432    1    12256


Q ss_pred             ccEEEEcCCCccc
Q 023482          218 FAKVVANIPFNIS  230 (281)
Q Consensus       218 ~d~Vi~n~P~~~~  230 (281)
                      +|++++.+|-+-.
T Consensus        84 ~Dll~ggpPCQ~f   96 (295)
T 2qrv_A           84 FDLVIGGSPCNDL   96 (295)
T ss_dssp             CSEEEECCCCGGG
T ss_pred             cCEEEecCCCccc
Confidence            8999999986543

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.31  E-value=0.0007  Score=59.28  Aligned_cols=78  Identities=17%  Similarity=0.105  Sum_probs=57.1

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc-------CCEEEEEeCCHH--------------------------HHHHHHHHhcCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA-------GATVLAIEKDQH--------------------------MVGLVRERFASI  186 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~-------~~~v~gvD~s~~--------------------------~l~~a~~~~~~~  186 (281)
                      ..+..|||+|+..|++++.|+..       +.+|+++|..+.                          .++.+++++++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            34569999999999999998753       568999996421                          467788887754


Q ss_pred             ----CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCC
Q 023482          187 ----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (281)
Q Consensus       187 ----~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~  227 (281)
                          ++|+++.||+.+.-..          ...+.+|+|+.+.-.
T Consensus       185 gl~~~~I~li~Gda~etL~~----------~~~~~~d~vfIDaD~  219 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPT----------APIDTLAVLRMDGDL  219 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTT----------CCCCCEEEEEECCCS
T ss_pred             CCCcCceEEEEeCHHHHHhh----------CCCCCEEEEEEcCCc
Confidence                4899999999764211          223578999987643

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.23  E-value=0.00014  Score=63.31  Aligned_cols=86  Identities=13%  Similarity=0.092  Sum_probs=52.8

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchh
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~  206 (281)
                      +..+.+...+.++.+|||+|||+|.++..++.. + ..|+|+|+...+...+... ...+ ++..+..++....      
T Consensus        79 L~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~~ii~~~~~~dv~~------  151 (282)
T 3gcz_A           79 LRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGWNLIRFKDKTDVFN------  151 (282)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTGGGEEEECSCCGGG------
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCCceEEeeCCcchhh------
Confidence            444455555667889999999999999988865 4 3799999986542222110 0011 3333333322111      


Q ss_pred             hHHHhhcCCCCccEEEEcCCCc
Q 023482          207 SLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                            .....+|+|+++...+
T Consensus       152 ------l~~~~~DvVLSDmApn  167 (282)
T 3gcz_A          152 ------MEVIPGDTLLCDIGES  167 (282)
T ss_dssp             ------SCCCCCSEEEECCCCC
T ss_pred             ------cCCCCcCEEEecCccC
Confidence                  2346899999986554

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.21  E-value=0.00053  Score=61.37  Aligned_cols=75  Identities=13%  Similarity=0.151  Sum_probs=58.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHcCC---EE-EEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLNAGA---TV-LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~---~v-~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .-+++|+.||.|.++..+...|.   .| .++|+++.+.+..+.|+...    ++++|+.++...+     +    ....
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~----~~~~DI~~~~~~~-----i----~~~~   76 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE----VQVKNLDSISIKQ-----I----ESLN   76 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC----CBCCCTTTCCHHH-----H----HHTC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC----cccCChhhcCHHH-----h----ccCC
Confidence            34899999999999999998873   45 69999999999999998642    6789998876432     1    1136


Q ss_pred             ccEEEEcCCCcc
Q 023482          218 FAKVVANIPFNI  229 (281)
Q Consensus       218 ~d~Vi~n~P~~~  229 (281)
                      +|++++.+|=+.
T Consensus        77 ~Dil~ggpPCQ~   88 (327)
T 3qv2_A           77 CNTWFMSPPCQP   88 (327)
T ss_dssp             CCEEEECCCCTT
T ss_pred             CCEEEecCCccC
Confidence            899999998443

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.17  E-value=0.00054  Score=61.44  Aligned_cols=73  Identities=14%  Similarity=0.254  Sum_probs=57.9

Q ss_pred             CEEEEEcCCccHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          143 DIVLEIGPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~---~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      -+++|+.||.|.+...+...|.   .|.++|+++.+.+..+.|+.   ...++++|+.++...+         .....+|
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~---~~~~~~~DI~~~~~~~---------~~~~~~D   71 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP---ETNLLNRNIQQLTPQV---------IKKWNVD   71 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---TSCEECCCGGGCCHHH---------HHHTTCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC---CCceeccccccCCHHH---------hccCCCC
Confidence            3799999999999999988874   47899999999999998886   4457889998876432         1113589


Q ss_pred             EEEEcCCC
Q 023482          220 KVVANIPF  227 (281)
Q Consensus       220 ~Vi~n~P~  227 (281)
                      ++++.+|=
T Consensus        72 ~l~ggpPC   79 (333)
T 4h0n_A           72 TILMSPPC   79 (333)
T ss_dssp             EEEECCCC
T ss_pred             EEEecCCC
Confidence            99998874

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.15  E-value=0.0012  Score=58.74  Aligned_cols=69  Identities=17%  Similarity=0.204  Sum_probs=57.2

Q ss_pred             EEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEE
Q 023482          144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi  222 (281)
                      +|+|+.||.|.+...+.+.|. -+.++|+++.+.+.-+.|+.    -+++++|+.++...+           ....|+++
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~----~~~~~~DI~~i~~~~-----------~~~~D~l~   66 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSDE-----------FPKCDGII   66 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC----SEEEESCGGGCCGGG-----------SCCCSEEE
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCcccCChhhCCHhh-----------CCcccEEE
Confidence            699999999999999988887 46799999999999888875    268899999886432           25689999


Q ss_pred             EcCCC
Q 023482          223 ANIPF  227 (281)
Q Consensus       223 ~n~P~  227 (281)
                      +.||=
T Consensus        67 ggpPC   71 (331)
T 3ubt_Y           67 GGPPS   71 (331)
T ss_dssp             CCCCG
T ss_pred             ecCCC
Confidence            98873

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.15  E-value=0.0003  Score=59.61  Aligned_cols=82  Identities=12%  Similarity=0.097  Sum_probs=57.9

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcC--CCCeEEEEc-Cccccccccc
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFAS--IDQLKVLQE-DFVKCHIRSH  204 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~--~~~v~~~~g-D~~~~~~~d~  204 (281)
                      +..+.+...+.++.+|+|+||++|..+...+.. ++ +|+|+|+-..-.+.=+ ....  .+.|+|..+ |+..++    
T Consensus        67 L~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn~v~fk~gvDv~~~~----  141 (267)
T 3p8z_A           67 LQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWNIVKLMSGKDVFYLP----  141 (267)
T ss_dssp             HHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTTSEEEECSCCGGGCC----
T ss_pred             HHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcCceEEEeccceeecC----
Confidence            455555566778889999999999999988876 44 8999999754431000 0011  237899999 987654    


Q ss_pred             hhhHHHhhcCCCCccEEEEcCC
Q 023482          205 MLSLFERRKSSSGFAKVVANIP  226 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P  226 (281)
                                ...+|.|+++.-
T Consensus       142 ----------~~~~DtllcDIg  153 (267)
T 3p8z_A          142 ----------PEKCDTLLCDIG  153 (267)
T ss_dssp             ----------CCCCSEEEECCC
T ss_pred             ----------CccccEEEEecC
Confidence                      256899999853

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.06  E-value=0.0013  Score=58.68  Aligned_cols=63  Identities=14%  Similarity=0.200  Sum_probs=53.0

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCH---HHHHHHHHHhcCCC
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ---HMVGLVRERFASID  187 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~---~~l~~a~~~~~~~~  187 (281)
                      ..+..+++.+++... .+++.|||..||+|..+.+....+.+.+|+|+++   ..++.+++++...+
T Consensus       226 ~kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          226 QKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            466788999988764 5788999999999999999988899999999999   99999999987544

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.99  E-value=0.0015  Score=57.06  Aligned_cols=82  Identities=12%  Similarity=0.062  Sum_probs=55.8

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCC--CCeEEEEc-Cccccccccc
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASI--DQLKVLQE-DFVKCHIRSH  204 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~g-D~~~~~~~d~  204 (281)
                      +..+.+...+.++..|||+||++|.++..++.. ++ +|+|+|+-..-.+.=+ .....  .-|++..+ |+..++.   
T Consensus        83 L~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~lV~~~~~~Dv~~l~~---  158 (321)
T 3lkz_A           83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWNIVTMKSGVDVFYRPS---  158 (321)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGGGEEEECSCCTTSSCC---
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCcceEEEeccCHhhCCC---
Confidence            455556666778889999999999999988776 44 7999999755221000 00011  14788888 8876642   


Q ss_pred             hhhHHHhhcCCCCccEEEEcCC
Q 023482          205 MLSLFERRKSSSGFAKVVANIP  226 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P  226 (281)
                                 ..+|.|+++.-
T Consensus       159 -----------~~~D~ivcDig  169 (321)
T 3lkz_A          159 -----------ECCDTLLCDIG  169 (321)
T ss_dssp             -----------CCCSEEEECCC
T ss_pred             -----------CCCCEEEEECc
Confidence                       45899998765

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.72  E-value=0.0026  Score=58.53  Aligned_cols=59  Identities=15%  Similarity=0.221  Sum_probs=48.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHH-Hc-C--CEEEEEeCCHHHHHHHHHHhcC-----C-CCeEEEEcCcc
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLL-NA-G--ATVLAIEKDQHMVGLVRERFAS-----I-DQLKVLQEDFV  197 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la-~~-~--~~v~gvD~s~~~l~~a~~~~~~-----~-~~v~~~~gD~~  197 (281)
                      +.+++.|+|||++.|..+..++ .. +  ++|+++|.+|...+.+++++..     . .++++++.-+.
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            4578899999999999999988 43 2  6999999999999999998875     2 57777765443

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.63  E-value=0.0029  Score=59.46  Aligned_cols=84  Identities=13%  Similarity=0.177  Sum_probs=61.7

Q ss_pred             CEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccc-------hhhHHHhhcC
Q 023482          143 DIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-------MLSLFERRKS  214 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~-------~~d~v~~~~~  214 (281)
                      -+++|+.||.|.++..+...|. .|.++|+++.+.+..+.|+...++..++++|+.++...+.       .+..+.  ..
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~--~~  166 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIR--QH  166 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHH--HH
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhh--hc
Confidence            4899999999999999988876 4899999999999999888544456688899988753211       001110  12


Q ss_pred             CCCccEEEEcCCCc
Q 023482          215 SSGFAKVVANIPFN  228 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~  228 (281)
                      .+.+|+|++.||=+
T Consensus       167 ~~~~Dvl~gGpPCQ  180 (482)
T 3me5_A          167 IPEHDVLLAGFPCQ  180 (482)
T ss_dssp             SCCCSEEEEECCCC
T ss_pred             CCCCCEEEecCCCc
Confidence            25689999988743

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.43  E-value=0.0035  Score=54.80  Aligned_cols=43  Identities=16%  Similarity=0.142  Sum_probs=32.8

Q ss_pred             HHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHH
Q 023482          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQH  174 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~  174 (281)
                      .+.+.--+.++.+|||+||++|.++..+++. + ..|+|+|+...
T Consensus        72 ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~  116 (300)
T 3eld_A           72 WLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE  116 (300)
T ss_dssp             HHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             HHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc
Confidence            3334422347789999999999999999986 4 38999999754

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=95.93  E-value=0.0063  Score=52.16  Aligned_cols=80  Identities=15%  Similarity=0.012  Sum_probs=48.7

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-CCe---EEEEc-Cccccccc
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQL---KVLQE-DFVKCHIR  202 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~~v---~~~~g-D~~~~~~~  202 (281)
                      +..|.+.--++++.+|+|+||+.|..+..+++.  ...|.|.++.... . .. -.... .++   +|..+ |+.+++  
T Consensus        62 L~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~-P~~~~~~Gv~~i~~~~G~Df~~~~--  136 (269)
T 2px2_A           62 LRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EE-PMLMQSYGWNIVTMKSGVDVFYKP--  136 (269)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CC-CCCCCSTTGGGEEEECSCCGGGSC--
T ss_pred             HHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cC-CCcccCCCceEEEeeccCCccCCC--
Confidence            334444444568899999999999999999987  2244454443321 0 00 00000 133   55557 998743  


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCC
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIP  226 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P  226 (281)
                                  +..+|+|+++..
T Consensus       137 ------------~~~~DvVLSDMA  148 (269)
T 2px2_A          137 ------------SEISDTLLCDIG  148 (269)
T ss_dssp             ------------CCCCSEEEECCC
T ss_pred             ------------CCCCCEEEeCCC
Confidence                        257899999853

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.57  E-value=0.041  Score=47.15  Aligned_cols=83  Identities=13%  Similarity=0.194  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +++.+|=-|.+.|.   ++..+++.|++|+.+|.+++.++.+.+.+... +++.++.+|+.+..--+..++.+.  ...+
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~--~~~G   83 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTF--ETYS   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            57888888987775   45556667999999999999998887777654 489999999988654444444332  3347


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|-
T Consensus        84 ~iDiLVNNA   92 (254)
T 4fn4_A           84 RIDVLCNNA   92 (254)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999873

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=95.56  E-value=0.05  Score=49.34  Aligned_cols=21  Identities=14%  Similarity=0.233  Sum_probs=17.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHc
Q 023482          142 GDIVLEIGPGTGSLTNVLLNA  162 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~  162 (281)
                      +.+|+|+|||+|..|..+...
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~   73 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDF   73 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHH
Confidence            468999999999999988543

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=95.53  E-value=0.08  Score=48.15  Aligned_cols=81  Identities=6%  Similarity=-0.142  Sum_probs=47.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHc-------------------CCEEEEEeCC-----------HHHHHHHHHHhcCCCCeEE
Q 023482          142 GDIVLEIGPGTGSLTNVLLNA-------------------GATVLAIEKD-----------QHMVGLVRERFASIDQLKV  191 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~-------------------~~~v~gvD~s-----------~~~l~~a~~~~~~~~~v~~  191 (281)
                      .-+|+|+||++|..|..+...                   ..+|+.-|+-           +.+.+.+++......+.-|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            468999999999999888654                   1256666654           4444443332221112344


Q ss_pred             EEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccH
Q 023482          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (281)
Q Consensus       192 ~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~  231 (281)
                      +.|....+-      +.   +-+..++|+|++|..+||.+
T Consensus       133 ~~gvpgSFy------~r---lfp~~S~d~v~Ss~aLHWls  163 (384)
T 2efj_A          133 IGAMPGSFY------SR---LFPEESMHFLHSCYCLHWLS  163 (384)
T ss_dssp             EEECCSCTT------SC---CSCTTCEEEEEEESCTTBCS
T ss_pred             EEecchhhh------hc---cCCCCceEEEEecceeeecC
Confidence            444333211      00   02347899999998888854

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=95.50  E-value=0.1  Score=47.54  Aligned_cols=72  Identities=24%  Similarity=0.271  Sum_probs=47.6

Q ss_pred             ccccCCHHHH--------HHHHH---HhcCCCCCEEEEEcCCccHHHHHHHHc---------CCEEEEEeCCHHHHHHHH
Q 023482          121 QHYMLNSEIN--------DQLAA---AAAVQEGDIVLEIGPGTGSLTNVLLNA---------GATVLAIEKDQHMVGLVR  180 (281)
Q Consensus       121 ~~~~~~~~~~--------~~l~~---~l~~~~~~~VLDiGcG~G~~t~~la~~---------~~~v~gvD~s~~~l~~a~  180 (281)
                      ..|++.+++.        .++++   .+....+-.|+|+|.|.|.++..+.+.         ..+++.||+|+...+.-+
T Consensus        49 GDF~Tapeis~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~  128 (387)
T 1zkd_A           49 GDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQ  128 (387)
T ss_dssp             --CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHH
T ss_pred             CCeeCCCchHHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHH
Confidence            3588887752        22222   222223347999999999998877642         238999999999988777


Q ss_pred             HHhcCCCCeEEE
Q 023482          181 ERFASIDQLKVL  192 (281)
Q Consensus       181 ~~~~~~~~v~~~  192 (281)
                      +++...++|++.
T Consensus       129 ~~L~~~~~v~W~  140 (387)
T 1zkd_A          129 TLLAGIRNIHWH  140 (387)
T ss_dssp             HHSTTCSSEEEE
T ss_pred             HHhcCCCCeEEe
Confidence            777654456554

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=95.36  E-value=0.029  Score=57.07  Aligned_cols=81  Identities=20%  Similarity=0.103  Sum_probs=56.5

Q ss_pred             CEEEEEcCCccHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHH----hhcCCC
Q 023482          143 DIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE----RRKSSS  216 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~----~~~~~~  216 (281)
                      -+++|+.||.|.++..+.+.|.  .+.++|+++.+.+..+.|+.   +..++.+|+.++.-....-|+..    .+...+
T Consensus       541 l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p---~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~~~  617 (1002)
T 3swr_A          541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP---GSTVFTEDCNILLKLVMAGETTNSRGQRLPQKG  617 (1002)
T ss_dssp             EEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT---TSEEECSCHHHHHHHHHHTCSBCTTCCBCCCTT
T ss_pred             CeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC---CCccccccHHHHhhhccchhhhhhhhhhcccCC
Confidence            3899999999999999988886  57799999999998888875   56778888755410000000000    001235


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      .+|+|++.||
T Consensus       618 ~vDll~GGpP  627 (1002)
T 3swr_A          618 DVEMLCGGPP  627 (1002)
T ss_dssp             TCSEEEECCC
T ss_pred             CeeEEEEcCC
Confidence            6899999987

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.12  E-value=0.099  Score=44.47  Aligned_cols=83  Identities=14%  Similarity=0.158  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..--+..++.+.  ...+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g   87 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETM--KAYG   87 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHTS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            56789999987664   45556667999999999998888777666543 489999999987643333333322  2346


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        88 ~id~lv~nA   96 (264)
T 3ucx_A           88 RVDVVINNA   96 (264)
T ss_dssp             CCSEEEECC
T ss_pred             CCcEEEECC
Confidence            789999875

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.00  E-value=0.18  Score=44.92  Aligned_cols=105  Identities=17%  Similarity=0.157  Sum_probs=64.0

Q ss_pred             HHHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHH
Q 023482          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~-v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      +....+.++++||=+|+|. |.++..+++. |++ |+++|.+++-++.+++. .. .-+.+ ..|..+   .+...+.+.
T Consensus       172 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~-~~~~~-~~~~~~---~~~~~~~v~  245 (363)
T 3m6i_A          172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP-EVVTH-KVERLS---AEESAKKIV  245 (363)
T ss_dssp             HHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT-TCEEE-ECCSCC---HHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch-hcccc-cccccc---hHHHHHHHH
Confidence            3566778899999999875 7777788876 776 99999999999999876 31 12222 111100   011111222


Q ss_pred             hhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          211 RRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ....+..+|+||-...-........+++.+++.+
T Consensus       246 ~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~i  279 (363)
T 3m6i_A          246 ESFGGIEPAVALECTGVESSIAAAIWAVKFGGKV  279 (363)
T ss_dssp             HHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEE
T ss_pred             HHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEE
Confidence            1133457999998765432333444666666655

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.93  E-value=0.13  Score=37.44  Aligned_cols=85  Identities=15%  Similarity=0.201  Sum_probs=58.3

Q ss_pred             CCEEEEEcCCccHHHHHHHH----cC-CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLN----AG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~----~~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ..+|+=+|+  |.++..++.    .+ .+|+++|.+++.++.+.     ...+.++.+|..+...   ..+.      ..
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-----~~~~~~~~~d~~~~~~---~~~~------~~   68 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-----RMGVATKQVDAKDEAG---LAKA------LG   68 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-----TTTCEEEECCTTCHHH---HHHH------TT
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-----hCCCcEEEecCCCHHH---HHHH------Hc
Confidence            457999998  555555543    47 79999999998777665     1367788888765321   1111      14


Q ss_pred             CccEEEEcCCCcccHHHHHHhccCCC
Q 023482          217 GFAKVVANIPFNISTDVIKQLLPMGD  242 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~~~~~~~ll~~~~  242 (281)
                      .+|+||...|+....++.....+.+.
T Consensus        69 ~~d~vi~~~~~~~~~~~~~~~~~~g~   94 (118)
T 3ic5_A           69 GFDAVISAAPFFLTPIIAKAAKAAGA   94 (118)
T ss_dssp             TCSEEEECSCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEECCCchhhHHHHHHHHHhCC
Confidence            68999999998887777777766553

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=94.91  E-value=0.088  Score=44.61  Aligned_cols=83  Identities=13%  Similarity=0.223  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|.+.|.   ++..|++.|++|+.++.+++.++.+...+...+ ++.++.+|+.+..--+..++.+.  ...+
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g   82 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQID--EKFG   82 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            46788888866553   344555568999999999999888887776543 89999999987543333333322  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        83 ~id~lv~nA   91 (257)
T 3imf_A           83 RIDILINNA   91 (257)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.87  E-value=0.059  Score=46.20  Aligned_cols=83  Identities=14%  Similarity=0.133  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=-|.+.|.   ++..+++.|++|+..|++++.++.+.+.+... .++..+.+|+.+...-+..++.+.  ...+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~G   85 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLD--AEGI   85 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH--HTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HHCC
Confidence            57888888877665   45556667999999999999888877666544 488999999887544333444432  4557


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|-
T Consensus        86 ~iDiLVNNA   94 (255)
T 4g81_D           86 HVDILINNA   94 (255)
T ss_dssp             CCCEEEECC
T ss_pred             CCcEEEECC
Confidence            899999874

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.83  E-value=0.098  Score=46.91  Aligned_cols=99  Identities=13%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             HHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ....+.++++||-+|+|. |.++..+++. |+ +|+++|.+++.++.+++.-.    -.++..+  +.++    .+.+..
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi~~~--~~~~----~~~~~~  253 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA----THVINSK--TQDP----VAAIKE  253 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC----SEEEETT--TSCH----HHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----CEEecCC--ccCH----HHHHHH
Confidence            455677899999999986 7888888876 77 79999999999998875421    1223221  1111    111211


Q ss_pred             hcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                       ...+.+|+||-...-........+++++++.+
T Consensus       254 -~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~i  285 (371)
T 1f8f_A          254 -ITDGGVNFALESTGSPEILKQGVDALGILGKI  285 (371)
T ss_dssp             -HTTSCEEEEEECSCCHHHHHHHHHTEEEEEEE
T ss_pred             -hcCCCCcEEEECCCCHHHHHHHHHHHhcCCEE
Confidence             12237899988765432233334555555443

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.80  E-value=0.15  Score=45.31  Aligned_cols=102  Identities=22%  Similarity=0.245  Sum_probs=63.5

Q ss_pred             HHHHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHH
Q 023482          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      .+....+.++++||-+|+|. |.++..+++. |+ +|+++|.+++.++.+++.-.    -.++  |..+.++    .+.+
T Consensus       158 al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa----~~vi--~~~~~~~----~~~v  227 (352)
T 3fpc_A          158 GAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA----TDII--NYKNGDI----VEQI  227 (352)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC----CEEE--CGGGSCH----HHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC----ceEE--cCCCcCH----HHHH
Confidence            34667788999999999875 7778888876 77 89999999999988876422    1222  2211111    1122


Q ss_pred             HhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ........+|+||-...-........+++.+++.+
T Consensus       228 ~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~  262 (352)
T 3fpc_A          228 LKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDI  262 (352)
T ss_dssp             HHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEE
T ss_pred             HHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEE
Confidence            21133446999998665433334444555555544

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=94.71  E-value=0.14  Score=42.82  Aligned_cols=83  Identities=14%  Similarity=0.176  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++..+.+...+... .++.++.+|+.+...-+..++.+.  ...+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIK--AENL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH--HHcC
Confidence            45788888865543   44455556899999999998888776666544 389999999987543333333332  3346


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        82 ~id~li~~A   90 (247)
T 3lyl_A           82 AIDILVNNA   90 (247)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.66  E-value=0.087  Score=44.74  Aligned_cols=84  Identities=14%  Similarity=0.176  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..-....++.+.  ...+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~g  105 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVL--AAHG  105 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHH--HhcC
Confidence            56789988876542   33444556899999999998888777666543 478999999987543333333221  2235


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|++|.|.-
T Consensus       106 ~id~lv~~Ag  115 (262)
T 3rkr_A          106 RCDVLVNNAG  115 (262)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998743

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.66  E-value=0.093  Score=44.10  Aligned_cols=84  Identities=17%  Similarity=0.185  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... +++.++.+|+.+...-...++.+.  ...+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g   85 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTL--AEFG   85 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            46789988976553   44555556899999999999888777666543 478899999987643333333322  2235


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|++|.|.-
T Consensus        86 ~id~li~~Ag   95 (253)
T 3qiv_A           86 GIDYLVNNAA   95 (253)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899998853

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=94.65  E-value=0.13  Score=43.60  Aligned_cols=83  Identities=19%  Similarity=0.317  Sum_probs=58.1

Q ss_pred             CCCEEEEEcC-CccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGP-GTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGc-G~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|. |.|.   ++..+++.|++|+.++.+++.++.+.+.+...  .++.++.+|+.+...-+..++.+.  ..
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~   98 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTV--EK   98 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHH--HH
Confidence            5678998887 5443   55566677999999999999888877776543  389999999987543333333322  22


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        99 ~g~id~li~~A  109 (266)
T 3o38_A           99 AGRLDVLVNNA  109 (266)
T ss_dssp             HSCCCEEEECC
T ss_pred             hCCCcEEEECC
Confidence            35789999874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.64  E-value=0.36  Score=42.79  Aligned_cols=101  Identities=20%  Similarity=0.134  Sum_probs=61.4

Q ss_pred             HHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      ....+.++++||-+|+|. |.++..+++. |++|+++|.+++.++.+++.-.   . .++..+- .-++    .+.+...
T Consensus       162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa---~-~~~~~~~-~~~~----~~~i~~~  232 (352)
T 1e3j_A          162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA---D-VTLVVDP-AKEE----ESSIIER  232 (352)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC---S-EEEECCT-TTSC----HHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC---C-EEEcCcc-cccH----HHHHHHH
Confidence            456778899999999874 7777777775 8899999999999988875321   1 2222110 0111    1111110


Q ss_pred             cC---CCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          213 KS---SSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       213 ~~---~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ..   ...+|+||-+...........+++.+++.+
T Consensus       233 ~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~i  267 (352)
T 1e3j_A          233 IRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTL  267 (352)
T ss_dssp             HHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEE
T ss_pred             hccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            11   356899998776443333344566666654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=94.62  E-value=0.081  Score=44.79  Aligned_cols=82  Identities=13%  Similarity=0.144  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+... +++.++.+|+.+..--+..++.+.  .. +
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~-g   82 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAAD--AH-A   82 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH--HH-S
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHH--hh-C
Confidence            46788988877664   44555566899999999988887777666543 488999999987654333344332  23 6


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        83 ~id~lv~nA   91 (252)
T 3h7a_A           83 PLEVTIFNV   91 (252)
T ss_dssp             CEEEEEECC
T ss_pred             CceEEEECC
Confidence            789999874

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=94.58  E-value=0.15  Score=44.02  Aligned_cols=83  Identities=22%  Similarity=0.193  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... +++.++.+|+.+..--+..++.+.  ...+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g  104 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLV--LKFG  104 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence            56789988876654   44455566899999999999888877776554 489999999987543333333322  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus       105 ~iD~lVnnA  113 (283)
T 3v8b_A          105 HLDIVVANA  113 (283)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=94.57  E-value=0.15  Score=45.26  Aligned_cols=92  Identities=21%  Similarity=0.213  Sum_probs=59.4

Q ss_pred             HHHHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHH
Q 023482          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      .+....+.++++||-+|+|. |.++..+++. |++|+++|.+++-++.+++. .   --.++ .|...+           
T Consensus       168 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l-G---a~~v~-~~~~~~-----------  231 (348)
T 3two_A          168 PLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM-G---VKHFY-TDPKQC-----------  231 (348)
T ss_dssp             HHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT-T---CSEEE-SSGGGC-----------
T ss_pred             HHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc-C---CCeec-CCHHHH-----------
Confidence            34455778899999999875 7777777776 88999999999999888763 2   11233 332221           


Q ss_pred             hhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          211 RRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                        .  ..+|+||-...-........+++++++.+
T Consensus       232 --~--~~~D~vid~~g~~~~~~~~~~~l~~~G~i  261 (348)
T 3two_A          232 --K--EELDFIISTIPTHYDLKDYLKLLTYNGDL  261 (348)
T ss_dssp             --C--SCEEEEEECCCSCCCHHHHHTTEEEEEEE
T ss_pred             --h--cCCCEEEECCCcHHHHHHHHHHHhcCCEE
Confidence              1  26888887655442333444555555543

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=94.53  E-value=0.069  Score=48.92  Aligned_cols=43  Identities=19%  Similarity=-0.038  Sum_probs=37.0

Q ss_pred             CEEEEEcCCccHHHHHHHHcCC---E----EEEEeCCHHHHHHHHHHhcC
Q 023482          143 DIVLEIGPGTGSLTNVLLNAGA---T----VLAIEKDQHMVGLVRERFAS  185 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~~---~----v~gvD~s~~~l~~a~~~~~~  185 (281)
                      -+|+|+.||.|.+...+.+.|.   -    |.++|+++.++..-+.++..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            3899999999999999987752   3    88899999999988888864

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.52  E-value=0.11  Score=45.11  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..-.+..++.+.  ...+
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g  107 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAF--RLLG  107 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HhCC
Confidence            57789999987653   44555556899999999999888877766543 489999999987543332333221  1225


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus       108 ~id~lvnnA  116 (301)
T 3tjr_A          108 GVDVVFSNA  116 (301)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=94.51  E-value=0.14  Score=44.04  Aligned_cols=83  Identities=11%  Similarity=0.108  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..--...++.+.  ...+
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g  100 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAV--ERFG  100 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH--HHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46789999976553   44555566999999999999888777766554 489999999987543332333221  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus       101 ~id~lv~nA  109 (279)
T 3sju_A          101 PIGILVNSA  109 (279)
T ss_dssp             SCCEEEECC
T ss_pred             CCcEEEECC
Confidence            789999874

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=94.44  E-value=0.11  Score=43.99  Aligned_cols=83  Identities=13%  Similarity=0.171  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+....+..++.+.  ...+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g   88 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAAL--DQFG   88 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46788888876654   44455556999999999998887776666543 489999999987543333333222  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        89 ~id~lv~nA   97 (256)
T 3gaf_A           89 KITVLVNNA   97 (256)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.31  E-value=0.35  Score=42.99  Aligned_cols=102  Identities=20%  Similarity=0.128  Sum_probs=62.3

Q ss_pred             HHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ....+.++++||-+|+|. |.++..+++. |+ +|+++|.+++-++.+++.-.   . .++..+-.+  . ....+.+..
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---~-~vi~~~~~~--~-~~~~~~i~~  237 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA---D-LVLQISKES--P-QEIARKVEG  237 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC---S-EEEECSSCC--H-HHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC---C-EEEcCcccc--c-chHHHHHHH
Confidence            456778899999999885 7788888875 77 99999999999888875321   1 233221000  0 011111211


Q ss_pred             hcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ... ..+|+||-...-........+++.+++.+
T Consensus       238 ~~~-~g~D~vid~~g~~~~~~~~~~~l~~~G~i  269 (356)
T 1pl8_A          238 QLG-CKPEVTIECTGAEASIQAGIYATRSGGTL  269 (356)
T ss_dssp             HHT-SCCSEEEECSCCHHHHHHHHHHSCTTCEE
T ss_pred             HhC-CCCCEEEECCCChHHHHHHHHHhcCCCEE
Confidence            122 56899998776433333444666666654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=94.27  E-value=0.16  Score=43.93  Aligned_cols=81  Identities=11%  Similarity=0.159  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=-|.+.|.   .+..|++.|++|+.+|.+++.++.+.+.+.  +++..+.+|+.+..-.+..++.+.  ...+.
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~G~  103 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG--GGAVGIQADSANLAELDRLYEKVK--AEAGR  103 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTCEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CCeEEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            57889988987775   555566679999999999999888776664  478889999987654444444432  33477


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|-
T Consensus       104 iDiLVNNA  111 (273)
T 4fgs_A          104 IDVLFVNA  111 (273)
T ss_dssp             EEEEEECC
T ss_pred             CCEEEECC
Confidence            89999873

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.16  E-value=0.17  Score=43.56  Aligned_cols=84  Identities=14%  Similarity=0.126  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcccc-ccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC-HIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~-~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.++.-.+.+.+.+...  .++.++.+|+.+. ......++.+.  ..
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~--~~   88 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIK--TH   88 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHH--HH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHH--Hh
Confidence            46788988876553   44445556899999999998887777666543  3799999999875 43233333332  12


Q ss_pred             CCCccEEEEcCC
Q 023482          215 SSGFAKVVANIP  226 (281)
Q Consensus       215 ~~~~d~Vi~n~P  226 (281)
                      .+..|++|.|.-
T Consensus        89 ~g~iD~lv~nAg  100 (311)
T 3o26_A           89 FGKLDILVNNAG  100 (311)
T ss_dssp             HSSCCEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence            357899999853

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=94.15  E-value=0.17  Score=43.40  Aligned_cols=83  Identities=20%  Similarity=0.278  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++...+.+...+++.++.+|+.+....+..++.+.  ...+.
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~  105 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALG--ELSAR  105 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHH--HHCSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHH--HhcCC
Confidence            46788988876543   33444556899999999998877766666544478888899877543222233221  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus       106 iD~lvnnA  113 (276)
T 2b4q_A          106 LDILVNNA  113 (276)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=94.15  E-value=0.21  Score=42.85  Aligned_cols=84  Identities=13%  Similarity=0.161  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeC-CHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++. +++.++.+.+.+... .++.++.+|+.+....+..++.+.  ...
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~  105 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVV--AEF  105 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHH--HHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HHc
Confidence            56789988876654   44555566899999996 777776665555433 489999999988654443444332  223


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|++|.|.-
T Consensus       106 g~iD~lvnnAg  116 (280)
T 4da9_A          106 GRIDCLVNNAG  116 (280)
T ss_dssp             SCCCEEEEECC
T ss_pred             CCCCEEEECCC
Confidence            57899998753

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.11  E-value=0.22  Score=42.41  Aligned_cols=82  Identities=12%  Similarity=0.159  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++ |.++..+    ++.|.+|++++.++..++...+.+... .++.++.+|+.+...-+..++.+.  ...
T Consensus        30 ~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~  106 (272)
T 1yb1_A           30 TGEIVLITGAG-HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVK--AEI  106 (272)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHT
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHH--HHC
Confidence            46788888865 4455444    445889999999998777666555433 389999999987543222233221  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|+||.|.
T Consensus       107 g~iD~li~~A  116 (272)
T 1yb1_A          107 GDVSILVNNA  116 (272)
T ss_dssp             CCCSEEEECC
T ss_pred             CCCcEEEECC
Confidence            5789999875

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.10  E-value=0.11  Score=44.13  Aligned_cols=84  Identities=13%  Similarity=0.114  Sum_probs=59.9

Q ss_pred             CCCEEEEEcC----CccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGc----G~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      +++++|=-|.    |.|. ++..|++.|++|+.++.+++.++.+.+.++..  .++.++.+|+.+..--...++.+.  .
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~   82 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIG--K   82 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHH--H
Confidence            5788998884    4554 56667778999999999998888877776643  378899999887543333333332  3


Q ss_pred             CCCCccEEEEcCC
Q 023482          214 SSSGFAKVVANIP  226 (281)
Q Consensus       214 ~~~~~d~Vi~n~P  226 (281)
                      ..+..|++|.|.-
T Consensus        83 ~~G~iD~lvnnAg   95 (256)
T 4fs3_A           83 DVGNIDGVYHSIA   95 (256)
T ss_dssp             HHCCCSEEEECCC
T ss_pred             HhCCCCEEEeccc
Confidence            3477899998743

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=94.05  E-value=0.21  Score=42.81  Aligned_cols=83  Identities=14%  Similarity=0.165  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC----------------HHHHHHHHHHhcCC-CCeEEEEcCccccc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD----------------QHMVGLVRERFASI-DQLKVLQEDFVKCH  200 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s----------------~~~l~~a~~~~~~~-~~v~~~~gD~~~~~  200 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.+|.+                ++.++.+.+.+... .++.++.+|+.+..
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~   89 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYD   89 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHH
Confidence            56789999987664   455556669999999987                66666666555443 48999999998754


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcC
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      --+..++.+.  ...+..|++|.|.
T Consensus        90 ~v~~~~~~~~--~~~g~id~lv~nA  112 (286)
T 3uve_A           90 ALKAAVDSGV--EQLGRLDIIVANA  112 (286)
T ss_dssp             HHHHHHHHHH--HHHSCCCEEEECC
T ss_pred             HHHHHHHHHH--HHhCCCCEEEECC
Confidence            3333333322  2235789999874

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=94.04  E-value=0.1  Score=51.76  Aligned_cols=54  Identities=17%  Similarity=0.187  Sum_probs=43.3

Q ss_pred             CEEEEEcCCccHHHHHHHHcC------C-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 023482          143 DIVLEIGPGTGSLTNVLLNAG------A-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~~------~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~  199 (281)
                      -+|+|+.||.|.++.-+.+.|      . -+.++|+++.+++.-+.|+.   +..+.+.|+.++
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp---~~~~~~~di~~i  273 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP---QTEVRNEKADEF  273 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT---TSEEEESCHHHH
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC---CCceecCcHHHh
Confidence            479999999999998887664      2 57899999999999988876   456667776543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=94.03  E-value=0.19  Score=43.59  Aligned_cols=84  Identities=14%  Similarity=0.103  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|.+    .|. ++..+++.|++|+.++.++...+.+++.....+++.++.+|+.+..--+..++.+.  ...
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~  107 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLE--KKW  107 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHH--HHT
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHH--Hhc
Confidence            57889999965    333 55666777999999999976665555444433578899999987543333333332  234


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|++|.|.-
T Consensus       108 g~iD~lVnnAG  118 (293)
T 3grk_A          108 GKLDFLVHAIG  118 (293)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            67899998743

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=94.01  E-value=0.23  Score=42.08  Aligned_cols=83  Identities=10%  Similarity=0.103  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..-....++.+.  ...+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g   83 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVV--RDFG   83 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HHhC
Confidence            46788988876553   34444556899999999998877766665543 378999999887542222232221  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        84 ~id~lv~nA   92 (262)
T 1zem_A           84 KIDFLFNNA   92 (262)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.00  E-value=0.18  Score=42.80  Aligned_cols=83  Identities=18%  Similarity=0.206  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|.+.|.   ++..|++.|++|+.++.+++.++.+.+.+...  .++.++.+|+.+..-.+..++.+.  ...
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   86 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAV--EEF   86 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence            56788888866553   34445556899999999999888777766544  389999999987543333333222  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        87 g~id~lvnnA   96 (262)
T 3pk0_A           87 GGIDVVCANA   96 (262)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=93.99  E-value=0.1  Score=44.96  Aligned_cols=83  Identities=17%  Similarity=0.283  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+....+..++.+.  ...+
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g   84 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAV--RRFG   84 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            56788888876553   44555566899999999999888877776544 488999999887543333333322  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        85 ~iD~lvnnA   93 (280)
T 3tox_A           85 GLDTAFNNA   93 (280)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=93.90  E-value=0.2  Score=42.91  Aligned_cols=83  Identities=14%  Similarity=0.223  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .+++||=.|.+.|.   ++..|++.|++|+.++.+++.++.+.+.+...+    ++.++.+|+.+..-....++.+.  .
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~   87 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVT--A   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHH--H
Confidence            46789988876553   444555668999999999998887776665432    68899999987543333333322  2


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|++|.|.
T Consensus        88 ~~g~id~lv~nA   99 (281)
T 3svt_A           88 WHGRLHGVVHCA   99 (281)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HcCCCCEEEECC
Confidence            235789999874

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=93.89  E-value=0.11  Score=44.56  Aligned_cols=83  Identities=18%  Similarity=0.219  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+.......++.+.  ...+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g  102 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLD--EQGI  102 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH--HHTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHCC
Confidence            56788888866553   44455556899999999998888777666543 488999999987653333333332  2345


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus       103 ~iD~lv~nA  111 (271)
T 4ibo_A          103 DVDILVNNA  111 (271)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.85  E-value=0.14  Score=43.76  Aligned_cols=83  Identities=16%  Similarity=0.131  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... +++.++.+|+.+..-.+..++.+.  ...+
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g   80 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAV--DTWG   80 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            35688888876553   44455566899999999998888777666543 478889999887543333333221  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        81 ~iD~lVnnA   89 (264)
T 3tfo_A           81 RIDVLVNNA   89 (264)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=93.82  E-value=0.26  Score=42.14  Aligned_cols=83  Identities=11%  Similarity=0.113  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+...-+..++.+.  ...+
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g   98 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVV--ERYG   98 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HHhC
Confidence            46789988876543   33444556899999999988777665555432 478899999887543222233221  2335


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        99 ~iD~lv~~A  107 (277)
T 2rhc_B           99 PVDVLVNNA  107 (277)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.81  E-value=0.26  Score=42.18  Aligned_cols=83  Identities=14%  Similarity=0.096  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeC-------------CHHHHHHHHHHhcCC-CCeEEEEcCcccccccc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-------------DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~-------------s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d  203 (281)
                      .++++|=.|.+.|.   ++..|++.|++|+.+|.             +++.++.+.+.+... .++.++.+|+.+..--+
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   93 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAALR   93 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence            57789988877654   44555666999999998             677777776666544 38899999998754333


Q ss_pred             chhhHHHhhcCCCCccEEEEcC
Q 023482          204 HMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      ..++.+.  ...+..|++|.|.
T Consensus        94 ~~~~~~~--~~~g~id~lvnnA  113 (280)
T 3pgx_A           94 ELVADGM--EQFGRLDVVVANA  113 (280)
T ss_dssp             HHHHHHH--HHHCCCCEEEECC
T ss_pred             HHHHHHH--HHcCCCCEEEECC
Confidence            2333221  2235789999874

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=93.77  E-value=0.21  Score=42.46  Aligned_cols=83  Identities=16%  Similarity=0.243  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~--~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+..  ..++.++.+|+.+....+..++.+.  ...
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   96 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAA--EAF   96 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HHc
Confidence            56788888876553   4445555689999999999888777665543  2489999999988654333333332  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        97 g~id~lv~nA  106 (266)
T 4egf_A           97 GGLDVLVNNA  106 (266)
T ss_dssp             TSCSEEEEEC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=93.77  E-value=0.34  Score=41.28  Aligned_cols=83  Identities=16%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC-
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS-  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~-  215 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+....+..++.+.  ... 
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   97 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVA--HVFD   97 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHTT
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46788988865443   33444556899999999988777665555432 378999999887543333333222  122 


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        98 g~id~lv~nA  107 (273)
T 1ae1_A           98 GKLNILVNNA  107 (273)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCcEEEECC
Confidence            6789999874

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=93.76  E-value=0.23  Score=41.74  Aligned_cols=83  Identities=17%  Similarity=0.256  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+....+..++.+.  ...+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g   83 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTV--EALG   83 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46788888866543   34444556899999999988877666555433 378999999887543222232221  1225


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        84 ~id~lv~nA   92 (247)
T 2jah_A           84 GLDILVNNA   92 (247)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=93.75  E-value=0.12  Score=44.44  Aligned_cols=83  Identities=20%  Similarity=0.263  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|.+.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..--+..++.+.  ...+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~~~g  108 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMT--GELG  108 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            56789988876553   44555566899999999988877776666543 488999999987643333333222  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus       109 ~iD~lvnnA  117 (276)
T 3r1i_A          109 GIDIAVCNA  117 (276)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=93.70  E-value=0.26  Score=42.12  Aligned_cols=79  Identities=10%  Similarity=0.093  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+.  .++.++.+|+.+..-.+..++.+   ...+.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~---~~~~~  103 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELG--NRAEFVSTNVTSEDSVLAAIEAA---NQLGR  103 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHH---TTSSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHH---HHhCC
Confidence            56788988876653   444555568999999999988887776663  48999999998764333333333   23456


Q ss_pred             ccEEEEc
Q 023482          218 FAKVVAN  224 (281)
Q Consensus       218 ~d~Vi~n  224 (281)
                      .|++|.|
T Consensus       104 id~lv~~  110 (281)
T 3ppi_A          104 LRYAVVA  110 (281)
T ss_dssp             EEEEEEC
T ss_pred             CCeEEEc
Confidence            8888877

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.68  E-value=0.095  Score=46.41  Aligned_cols=99  Identities=15%  Similarity=0.128  Sum_probs=60.9

Q ss_pred             HHhcCCCCCEEEEEcCC--ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          135 AAAAVQEGDIVLEIGPG--TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG--~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ....+.++++||-+|+|  .|..+..+++. |++|+++|.+++-++.+++.-.   . .++  |..+.++    .+.+..
T Consensus       138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga---~-~~~--~~~~~~~----~~~~~~  207 (340)
T 3gms_A          138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGA---A-YVI--DTSTAPL----YETVME  207 (340)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC---S-EEE--ETTTSCH----HHHHHH
T ss_pred             HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCC---c-EEE--eCCcccH----HHHHHH
Confidence            45677889999999987  67777777775 8899999999988888876321   1 222  2211111    122221


Q ss_pred             hcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ......+|+||.+..-......+ .++++++.+
T Consensus       208 ~~~~~g~Dvvid~~g~~~~~~~~-~~l~~~G~i  239 (340)
T 3gms_A          208 LTNGIGADAAIDSIGGPDGNELA-FSLRPNGHF  239 (340)
T ss_dssp             HTTTSCEEEEEESSCHHHHHHHH-HTEEEEEEE
T ss_pred             HhCCCCCcEEEECCCChhHHHHH-HHhcCCCEE
Confidence            13345799999876533333333 455555543

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=93.67  E-value=0.22  Score=43.20  Aligned_cols=83  Identities=17%  Similarity=0.179  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC------------HHHHHHHHHHhcCC-CCeEEEEcCccccccccc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s------------~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~  204 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.+|.+            ++.++.+...+... .++.++.+|+.+..--..
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~  106 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQA  106 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence            56789999987664   445556669999999987            66666655555433 489999999987543333


Q ss_pred             hhhHHHhhcCCCCccEEEEcC
Q 023482          205 MLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      .++.+.  ...+..|++|.|.
T Consensus       107 ~~~~~~--~~~g~iD~lv~nA  125 (299)
T 3t7c_A          107 AVDDGV--TQLGRLDIVLANA  125 (299)
T ss_dssp             HHHHHH--HHHSCCCEEEECC
T ss_pred             HHHHHH--HHhCCCCEEEECC
Confidence            333322  2235789999873

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=93.64  E-value=0.22  Score=42.11  Aligned_cols=81  Identities=19%  Similarity=0.289  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+.  .++.++.+|+.+..-.+..++.+.  ...+.
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   82 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG--PRVHALRSDIADLNEIAVLGAAAG--QTLGA   82 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHH--HHHSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHH--HHhCC
Confidence            56789999976554   444555568999999999988877766653  378999999987643333333322  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        83 id~lv~nA   90 (255)
T 4eso_A           83 IDLLHINA   90 (255)
T ss_dssp             EEEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=93.61  E-value=0.17  Score=42.69  Aligned_cols=83  Identities=14%  Similarity=0.226  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---C-CCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---I-DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~---~-~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+..   . .++.++.+|+.+..-.+..++.+.  .
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~   83 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH--Q   83 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH--H
Confidence            46788988877653   4455556699999999999888777665532   2 478899999987543333333322  2


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|++|.|.
T Consensus        84 ~~g~iD~lvnnA   95 (250)
T 3nyw_A           84 KYGAVDILVNAA   95 (250)
T ss_dssp             HHCCEEEEEECC
T ss_pred             hcCCCCEEEECC
Confidence            235789999874

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.60  E-value=0.49  Score=42.21  Aligned_cols=99  Identities=11%  Similarity=0.039  Sum_probs=61.1

Q ss_pred             HHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      +...+.++++||-+|+|. |..+..+++. |++|+++|.+++-++.+++.-.    -.++..+..+      ..+.+...
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~------~~~~v~~~  252 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA----DHGINRLEED------WVERVYAL  252 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC----SEEEETTTSC------HHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC----CEEEcCCccc------HHHHHHHH
Confidence            345677899999999874 7777777775 8899999999999988876422    1233211111      11122111


Q ss_pred             cCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          213 KSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      .....+|+||-+.. ........+++.+++.+
T Consensus       253 ~~g~g~D~vid~~g-~~~~~~~~~~l~~~G~i  283 (363)
T 3uog_A          253 TGDRGADHILEIAG-GAGLGQSLKAVAPDGRI  283 (363)
T ss_dssp             HTTCCEEEEEEETT-SSCHHHHHHHEEEEEEE
T ss_pred             hCCCCceEEEECCC-hHHHHHHHHHhhcCCEE
Confidence            33447999998766 33333344555555554

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=93.60  E-value=0.22  Score=43.75  Aligned_cols=83  Identities=17%  Similarity=0.137  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++.|.   ++..|++.|.+|++++.+++.++.+.+.+...+   ++.++.+|+.+..-.+..++.+.  ..
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~   84 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE--AR   84 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH--Hh
Confidence            46789999977554   444555568999999999988877766554322   78999999987543333333332  23


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        85 ~g~id~lv~nA   95 (319)
T 3ioy_A           85 FGPVSILCNNA   95 (319)
T ss_dssp             TCCEEEEEECC
T ss_pred             CCCCCEEEECC
Confidence            36789999874

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=93.59  E-value=0.36  Score=40.74  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.+|.+++.++.+...+.  +++.++.+|+.+...-...++.+.  ...+.
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~--~~~g~   82 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG--PAAYAVQMDVTRQDSIDAAIAATV--EHAGG   82 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHH--HHSSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CCceEEEeeCCCHHHHHHHHHHHH--HHcCC
Confidence            56789988866553   444555568999999999988877766653  478899999987543332333222  23457


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        83 id~lv~~A   90 (259)
T 4e6p_A           83 LDILVNNA   90 (259)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=93.57  E-value=0.12  Score=44.49  Aligned_cols=82  Identities=20%  Similarity=0.236  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... +++.++.+|+.+.......++.+..   .+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~---~g  108 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEA---IA  108 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHH---HS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHH---hC
Confidence            56789988876553   44455556899999999987777666555433 4899999999876544434443322   26


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus       109 ~iD~lvnnA  117 (275)
T 4imr_A          109 PVDILVINA  117 (275)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=93.55  E-value=0.25  Score=41.14  Aligned_cols=82  Identities=16%  Similarity=0.228  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++ |.++..+    ++.|++|+.++.+++..+...+.+....++.++.+|+.+..--...++.+.  ...+
T Consensus         5 ~~k~vlVtGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   81 (251)
T 1zk4_A            5 DGKVAIITGGT-LGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATE--KAFG   81 (251)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCcEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHH--HHhC
Confidence            45678888765 4445444    445889999999988777666655443589999999887542222222221  1225


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        82 ~id~li~~A   90 (251)
T 1zk4_A           82 PVSTLVNNA   90 (251)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.53  E-value=0.41  Score=36.23  Aligned_cols=70  Identities=19%  Similarity=0.255  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++|+=+|+|  .++..++    +.|.+|+++|.+++.++.++..     .+.++.+|..+...       +.. .....
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-----~~~~~~gd~~~~~~-------l~~-~~~~~   70 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-----GFDAVIADPTDESF-------YRS-LDLEG   70 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-----TCEEEECCTTCHHH-------HHH-SCCTT
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-----CCcEEECCCCCHHH-------HHh-CCccc
Confidence            3578888885  4555444    3488999999999988877652     46788999876431       111 12246


Q ss_pred             ccEEEEcCC
Q 023482          218 FAKVVANIP  226 (281)
Q Consensus       218 ~d~Vi~n~P  226 (281)
                      +|.||...|
T Consensus        71 ~d~vi~~~~   79 (141)
T 3llv_A           71 VSAVLITGS   79 (141)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEEecC
Confidence            899998877

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=93.51  E-value=0.32  Score=41.19  Aligned_cols=82  Identities=13%  Similarity=0.172  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++ |.++..+    ++.|++|+.++.++...+...+.+...+++.++.+|+.+..--...++.+.  ...+
T Consensus        15 ~~k~vlITGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   91 (278)
T 2bgk_A           15 QDKVAIITGGA-GGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTI--AKHG   91 (278)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             cCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence            46789988865 4445444    445889999999988776655555433479999999987543222222221  1225


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        92 ~id~li~~A  100 (278)
T 2bgk_A           92 KLDIMFGNV  100 (278)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.50  E-value=0.25  Score=42.21  Aligned_cols=83  Identities=17%  Similarity=0.109  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC------------HHHHHHHHHHhcCC-CCeEEEEcCccccccccc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s------------~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~  204 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.+|.+            .+.++.+...+... .++.++.+|+.+..-...
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   88 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR   88 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence            56789988876553   445555669999999987            66666665555433 489999999987543322


Q ss_pred             hhhHHHhhcCCCCccEEEEcC
Q 023482          205 MLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      .++.+.  ...+..|++|.|.
T Consensus        89 ~~~~~~--~~~g~id~lv~nA  107 (287)
T 3pxx_A           89 ELANAV--AEFGKLDVVVANA  107 (287)
T ss_dssp             HHHHHH--HHHSCCCEEEECC
T ss_pred             HHHHHH--HHcCCCCEEEECC
Confidence            232221  2235789999874

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=93.47  E-value=0.27  Score=41.24  Aligned_cols=82  Identities=13%  Similarity=0.153  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++ |.++..+    ++.|.+|+.++.++...+...+.+... .++.++.+|+.+...-...++.+.  ...
T Consensus        12 ~~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   88 (260)
T 3awd_A           12 DNRVAIVTGGA-QNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVH--EQE   88 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH--HHc
Confidence            46788988865 4445444    445889999999988776655554432 479999999987532222222221  112


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|+||.|.
T Consensus        89 ~~id~vi~~A   98 (260)
T 3awd_A           89 GRVDILVACA   98 (260)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999874

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=93.41  E-value=0.18  Score=52.80  Aligned_cols=83  Identities=19%  Similarity=0.110  Sum_probs=56.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHH----hhcCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE----RRKSS  215 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~----~~~~~  215 (281)
                      .-+++|+.||.|.++..+...|.  .+.++|+++.+++.-+.|+.   +..++.+|+.++.-....-|+..    .+...
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p---~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp~~  927 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP---GTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQK  927 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT---TSEEECSCHHHHHHHHTTTCSBCSSCCBCCCT
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC---CCcEeeccHHHHhHhhhccchhhhhhhhcccc
Confidence            34799999999999999998886  48899999999998888865   45677777654310000000000    00122


Q ss_pred             CCccEEEEcCCC
Q 023482          216 SGFAKVVANIPF  227 (281)
Q Consensus       216 ~~~d~Vi~n~P~  227 (281)
                      +.+|+|++.||=
T Consensus       928 ~~vDvl~GGpPC  939 (1330)
T 3av4_A          928 GDVEMLCGGPPC  939 (1330)
T ss_dssp             TTCSEEEECCCC
T ss_pred             CccceEEecCCC
Confidence            468999998874

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=93.40  E-value=0.21  Score=42.60  Aligned_cols=83  Identities=19%  Similarity=0.183  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC------------HHHHHHHHHHhcCC-CCeEEEEcCccccccccc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s------------~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~  204 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.+|.+            ++.++.+.+.+... .++.++.+|+.+..--+.
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   91 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSA   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            56789988876553   445556669999999987            66666555444332 489999999987543333


Q ss_pred             hhhHHHhhcCCCCccEEEEcC
Q 023482          205 MLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      .++.+.  ...+..|++|.|.
T Consensus        92 ~~~~~~--~~~g~id~lv~nA  110 (278)
T 3sx2_A           92 ALQAGL--DELGRLDIVVANA  110 (278)
T ss_dssp             HHHHHH--HHHCCCCEEEECC
T ss_pred             HHHHHH--HHcCCCCEEEECC
Confidence            333222  2235789999874

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=93.38  E-value=0.37  Score=40.63  Aligned_cols=83  Identities=18%  Similarity=0.211  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC-
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS-  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~-  215 (281)
                      .+++||=.|.+.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..-....++.+.  ... 
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~   85 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVA--NHFH   85 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH--HHTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence            46788888865443   33444556899999999988777665554332 378889999887543222222221  122 


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        86 g~id~lv~~A   95 (260)
T 2ae2_A           86 GKLNILVNNA   95 (260)
T ss_dssp             TCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.35  E-value=0.27  Score=37.48  Aligned_cols=74  Identities=23%  Similarity=0.294  Sum_probs=48.3

Q ss_pred             CEEEEEcCCc-cHH-HHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          143 DIVLEIGPGT-GSL-TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       143 ~~VLDiGcG~-G~~-t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      ++|+=+|+|. |.. +..|.+.|.+|+++|.+++.++.++..     .+.++.||+.+....       .. .....+|.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~-----g~~~i~gd~~~~~~l-------~~-a~i~~ad~   74 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER-----GVRAVLGNAANEEIM-------QL-AHLECAKW   74 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-----TCEEEESCTTSHHHH-------HH-TTGGGCSE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc-----CCCEEECCCCCHHHH-------Hh-cCcccCCE
Confidence            4788888763 332 223333488999999999998887652     567899998764321       10 11245788


Q ss_pred             EEEcCCCcc
Q 023482          221 VVANIPFNI  229 (281)
Q Consensus       221 Vi~n~P~~~  229 (281)
                      |+...|-..
T Consensus        75 vi~~~~~~~   83 (140)
T 3fwz_A           75 LILTIPNGY   83 (140)
T ss_dssp             EEECCSCHH
T ss_pred             EEEECCChH
Confidence            888777543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=93.29  E-value=0.29  Score=41.48  Aligned_cols=83  Identities=17%  Similarity=0.185  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-C-C-CeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I-D-QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~-~-~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+.. . + ++.++.+|+.+..--...++.+.  ..
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE--RT   84 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH--HH
Confidence            46789989977653   4455556689999999999888777666543 2 2 58999999987543333333322  22


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        85 ~g~id~lvnnA   95 (265)
T 3lf2_A           85 LGCASILVNNA   95 (265)
T ss_dssp             HCSCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            35789999874

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=93.27  E-value=0.16  Score=43.38  Aligned_cols=83  Identities=12%  Similarity=0.104  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+...+... .++.++.+|+.+..-.+..++.+.  ...+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g  104 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTL--KEFG  104 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHH--HHcC
Confidence            46788888865553   44455566899999999998887776655433 378899999887543333333221  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus       105 ~iD~lvnnA  113 (270)
T 3ftp_A          105 ALNVLVNNA  113 (270)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.27  E-value=0.19  Score=45.48  Aligned_cols=48  Identities=23%  Similarity=0.351  Sum_probs=40.5

Q ss_pred             HHHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHH
Q 023482          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (281)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~  181 (281)
                      +....+.++++||-+|+|. |.++..+++. |+ +|+++|.+++.++.+++
T Consensus       178 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          178 CVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            3556778899999999986 8888888876 87 99999999999888764

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=93.24  E-value=0.3  Score=41.39  Aligned_cols=83  Identities=12%  Similarity=0.089  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+..   ..++.++.+|+.+..--...++.+.  ..
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~   89 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT--ER   89 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH--HH
Confidence            46789988876553   3444555689999999998877766554432   2478899999887543222232221  12


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        90 ~g~id~lv~nA  100 (267)
T 1iy8_A           90 FGRIDGFFNNA  100 (267)
T ss_dssp             HSCCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            35789999874

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=93.24  E-value=0.29  Score=41.75  Aligned_cols=83  Identities=13%  Similarity=0.134  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeC-------------CHHHHHHHHHHhcCC-CCeEEEEcCcccccccc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-------------DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~-------------s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d  203 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.+|.             +++.++.+.+..... .++.++.+|+.+..--.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   89 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLR   89 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            56789988877654   44555666999999998             677666665554433 48999999998754333


Q ss_pred             chhhHHHhhcCCCCccEEEEcC
Q 023482          204 HMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      ..++.+.  ...+..|++|.|.
T Consensus        90 ~~~~~~~--~~~g~id~lvnnA  109 (277)
T 3tsc_A           90 KVVDDGV--AALGRLDIIVANA  109 (277)
T ss_dssp             HHHHHHH--HHHSCCCEEEECC
T ss_pred             HHHHHHH--HHcCCCCEEEECC
Confidence            3333221  2235789999874

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=93.22  E-value=0.35  Score=40.64  Aligned_cols=81  Identities=20%  Similarity=0.252  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+...  .++.++.+|+.+.......++.+.  ...+.
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~   83 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIG--DAALAVAADISKEADVDAAVEAAL--SKFGK   83 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTSHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHH--HhcCC
Confidence            46789999987653   455556668999999999998887776553  478999999987543333333222  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        84 id~li~~A   91 (261)
T 3n74_A           84 VDILVNNA   91 (261)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=93.18  E-value=0.14  Score=44.53  Aligned_cols=84  Identities=15%  Similarity=0.131  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|.+    .|. ++..|++.|++|+.++.++...+.+.+.....+.+.++.+|+.+..--+..++.+.  ...
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~  106 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLA--EEW  106 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            56789999974    443 55666677999999999976555555444433567899999987543333333332  223


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|++|.|.-
T Consensus       107 g~iD~lVnnAG  117 (296)
T 3k31_A          107 GSLDFVVHAVA  117 (296)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57899998753

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=93.17  E-value=0.18  Score=43.82  Aligned_cols=83  Identities=17%  Similarity=0.175  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|.+.|.   ++..|++.|++|+.++.+++.++.+.+.+...  +++.++.+|+.+..-....++.+.  ...
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~  117 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVV--DAF  117 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHH--HHc
Confidence            56788888876553   44555566899999999998887777766544  389999999987543333333221  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus       118 g~iD~lvnnA  127 (293)
T 3rih_A          118 GALDVVCANA  127 (293)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=93.17  E-value=0.28  Score=42.07  Aligned_cols=81  Identities=20%  Similarity=0.269  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.+|.+++.++.+.+.+.  .++.++.+|+.+....+..++.+.  ...+.
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~  103 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIG--CGAAACRVDVSDEQQIIAMVDACV--AAFGG  103 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--SSCEEEECCTTCHHHHHHHHHHHH--HHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC--CcceEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            56788988876653   455556679999999999988877766653  478899999987543333333221  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus       104 iD~lvnnA  111 (277)
T 3gvc_A          104 VDKLVANA  111 (277)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.16  E-value=0.27  Score=42.07  Aligned_cols=83  Identities=14%  Similarity=0.148  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-C---CeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-D---QLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~---~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .   ++.++.+|+.+....+..++.+.  .
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~   82 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL--K   82 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHH--H
Confidence            46788888865542   34444556899999999998877766655433 2   68999999987543222233221  1


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|++|.|.
T Consensus        83 ~~g~iD~lv~nA   94 (280)
T 1xkq_A           83 QFGKIDVLVNNA   94 (280)
T ss_dssp             HHSCCCEEEECC
T ss_pred             hcCCCCEEEECC
Confidence            235789999874

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=93.14  E-value=0.4  Score=40.29  Aligned_cols=82  Identities=17%  Similarity=0.216  Sum_probs=52.1

Q ss_pred             CCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ++++|=.|.+.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+...-...++.+.  ...+.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~g~   79 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQAR--KTLGG   79 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HHTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence            3567777765442   33444556899999999988776665555432 478899999887542222222221  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        80 id~lv~nA   87 (256)
T 1geg_A           80 FDVIVNNA   87 (256)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=93.11  E-value=0.26  Score=41.42  Aligned_cols=81  Identities=16%  Similarity=0.242  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+...+.  .++.++.+|+.+..--+..++.+.  ...+.
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   80 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIG--KKARAIAADISDPGSVKALFAEIQ--ALTGG   80 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC--TTEEECCCCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHH--HHCCC
Confidence            56789988876553   445555669999999999988877766553  478899999887543333333322  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        81 id~lv~nA   88 (247)
T 3rwb_A           81 IDILVNNA   88 (247)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=93.00  E-value=0.34  Score=40.38  Aligned_cols=80  Identities=13%  Similarity=0.051  Sum_probs=54.7

Q ss_pred             CCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      ++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+..  ++.++.+|+.+..-.+..++.+.  ...+..
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~--~~~g~i   78 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGN--AVIGIVADLAHHEDVDVAFAAAV--EWGGLP   78 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GEEEEECCTTSHHHHHHHHHHHH--HHHCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHH--HhcCCC
Confidence            4678888876553   4445556689999999999988877766642  68999999987543333333222  223578


Q ss_pred             cEEEEcC
Q 023482          219 AKVVANI  225 (281)
Q Consensus       219 d~Vi~n~  225 (281)
                      |++|.|.
T Consensus        79 d~lvnnA   85 (235)
T 3l6e_A           79 ELVLHCA   85 (235)
T ss_dssp             SEEEEEC
T ss_pred             cEEEECC
Confidence            9999874

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=92.98  E-value=0.28  Score=41.95  Aligned_cols=82  Identities=17%  Similarity=0.213  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.++...+.+.+.....+++.++.+|+.+..-.....+.+   ...+.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~---~~~g~  106 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEEL---AATRR  106 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHH---HHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH---HhcCC
Confidence            56789999976653   4555566689999999765544444433333348899999998754332222322   22367


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus       107 iD~lv~nA  114 (273)
T 3uf0_A          107 VDVLVNNA  114 (273)
T ss_dssp             CCEEEECC
T ss_pred             CcEEEECC
Confidence            89999874

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=92.93  E-value=0.23  Score=41.97  Aligned_cols=83  Identities=13%  Similarity=0.103  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++    .|. ++..|++.|++|+.++.+....+.+++.....+++.++.+|+.+..-....++.+.  ...
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   90 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLK--THW   90 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH--HHC
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            67899999964    332 34455556899999998865555555444444578899999987553333333332  234


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        91 g~id~lv~nA  100 (271)
T 3ek2_A           91 DSLDGLVHSI  100 (271)
T ss_dssp             SCEEEEEECC
T ss_pred             CCCCEEEECC
Confidence            6789999874

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=92.93  E-value=0.28  Score=41.77  Aligned_cols=83  Identities=17%  Similarity=0.216  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeC-CHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++.|.   ++..+++.|++|+.++. +++..+...+.+... .++.++.+|+.+..-....++.+.  ...
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~  105 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIV--QSD  105 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--Hhc
Confidence            56789988877653   44555556899999999 666666665555443 389999999887543333333222  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus       106 g~id~li~nA  115 (271)
T 4iin_A          106 GGLSYLVNNA  115 (271)
T ss_dssp             SSCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=92.90  E-value=0.35  Score=40.91  Aligned_cols=83  Identities=12%  Similarity=0.161  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEE-eCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAI-EKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gv-D~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.+ +.+++.++.+.+.+...+ ++.++.+|+.+..--+..++.+.  ...
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   80 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQID--ETF   80 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            46788888866543   344455568999886 889888877776665543 89999999987543333333322  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        81 g~id~lv~nA   90 (258)
T 3oid_A           81 GRLDVFVNNA   90 (258)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999875

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=92.86  E-value=0.3  Score=41.81  Aligned_cols=81  Identities=14%  Similarity=0.147  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+.  +++.++.+|+.+..-.+..++.+.  ...+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~  102 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG--DDALCVPTDVTDPDSVRALFTATV--EKFGR  102 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT--SCCEEEECCTTSHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CCeEEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            56788888876553   445555668999999999988877766654  478999999987543333333222  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus       103 iD~lVnnA  110 (272)
T 4dyv_A          103 VDVLFNNA  110 (272)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=92.82  E-value=0.37  Score=41.34  Aligned_cols=81  Identities=14%  Similarity=0.179  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.......  .++.++.+|+.+..-....++.+.  ...+.
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   79 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG--GNAVGVVGDVRSLQDQKRAAERCL--AAFGK   79 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTB--TTEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcC--CcEEEEEcCCCCHHHHHHHHHHHH--HhcCC
Confidence            46788988877653   445556668999999999988877665543  488999999987543333333322  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        80 iD~lvnnA   87 (281)
T 3zv4_A           80 IDTLIPNA   87 (281)
T ss_dssp             CCEEECCC
T ss_pred             CCEEEECC
Confidence            89999874

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=92.81  E-value=0.28  Score=41.45  Aligned_cols=84  Identities=19%  Similarity=0.212  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-CCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+.. ..++.++.+|+.+..--...++.+.. ...+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~~g   82 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDR-EQQG   82 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHH-HHTT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHH-hcCC
Confidence            45678888865443   3344445689999999998877766555432 23788999998875432223332211 1146


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        83 ~id~lvnnA   91 (260)
T 2qq5_A           83 RLDVLVNNA   91 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEECC
Confidence            789999886

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=92.79  E-value=0.42  Score=40.93  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.....  .++.++.+|+.+..-.+..++.+.  ...+.
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~  101 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG--SKAFGVRVDVSSAKDAESMVEKTT--AKWGR  101 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            46789988876653   445555668999999999988776665543  478899999887543333333222  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus       102 iD~lv~nA  109 (277)
T 4dqx_A          102 VDVLVNNA  109 (277)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=92.78  E-value=0.25  Score=42.25  Aligned_cols=81  Identities=19%  Similarity=0.191  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCCH--HHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQ--HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s~--~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .+++||=.|.+    .|. ++..+++.|++|+.++.++  +.++...   ...+++.++.+|+.+..--...++.+.  .
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~   99 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLC---AEFNPAAVLPCDVISDQEIKDLFVELG--K   99 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHH---GGGCCSEEEECCTTCHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHH---HhcCCceEEEeecCCHHHHHHHHHHHH--H
Confidence            57899999943    454 5666677799999999987  3333332   233478999999987543333333332  2


Q ss_pred             CCCCccEEEEcCC
Q 023482          214 SSSGFAKVVANIP  226 (281)
Q Consensus       214 ~~~~~d~Vi~n~P  226 (281)
                      ..+..|++|.|.-
T Consensus       100 ~~g~id~li~nAg  112 (280)
T 3nrc_A          100 VWDGLDAIVHSIA  112 (280)
T ss_dssp             HCSSCCEEEECCC
T ss_pred             HcCCCCEEEECCc
Confidence            3467899998753

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=92.77  E-value=0.3  Score=42.74  Aligned_cols=83  Identities=14%  Similarity=0.137  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC------------HHHHHHHHHHhcCC-CCeEEEEcCccccccccc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s------------~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~  204 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.+|.+            ++.++.+.+.+... .++.++.+|+.+..--+.
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  124 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQA  124 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence            56789988876654   445556669999999986            66666555444433 489999999987543332


Q ss_pred             hhhHHHhhcCCCCccEEEEcC
Q 023482          205 MLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      .++.+.  ...+..|++|.|.
T Consensus       125 ~~~~~~--~~~g~iD~lVnnA  143 (317)
T 3oec_A          125 VVDEAL--AEFGHIDILVSNV  143 (317)
T ss_dssp             HHHHHH--HHHSCCCEEEECC
T ss_pred             HHHHHH--HHcCCCCEEEECC
Confidence            333221  2235789999874

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=92.76  E-value=0.39  Score=40.53  Aligned_cols=83  Identities=12%  Similarity=0.161  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~--~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+..  ..++.++.+|+.+..--+..++.+.  ...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   83 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVR--SSF   83 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            46788888866442   3344455689999999998877665554432  2478899999887543222222221  122


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        84 g~id~lv~~A   93 (263)
T 3ai3_A           84 GGADILVNNA   93 (263)
T ss_dssp             SSCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999874

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=92.76  E-value=0.29  Score=41.59  Aligned_cols=78  Identities=18%  Similarity=0.154  Sum_probs=53.5

Q ss_pred             CEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       143 ~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      ++||=-|.+.|.   ++..+++.|++|+.+|++++.++.+.+   ..+++..+.+|+.+..-.+..++.+.  ...+..|
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~v~~~~--~~~g~iD   77 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK---ERPNLFYFHGDVADPLTLKKFVEYAM--EKLQRID   77 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT---TCTTEEEEECCTTSHHHHHHHHHHHH--HHHSCCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hcCCEEEEEecCCCHHHHHHHHHHHH--HHcCCCC
Confidence            567777877664   455666679999999999887665443   33488899999987543333333322  3347789


Q ss_pred             EEEEcC
Q 023482          220 KVVANI  225 (281)
Q Consensus       220 ~Vi~n~  225 (281)
                      ++|.|-
T Consensus        78 iLVNNA   83 (247)
T 3ged_A           78 VLVNNA   83 (247)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999874

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=92.74  E-value=0.33  Score=40.87  Aligned_cols=83  Identities=17%  Similarity=0.173  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..-....++.+.  ...+
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g   90 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAV--NLHG   90 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            46788888865442   33444456899999999988776655554432 378889999876532222222221  1225


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        91 ~iD~lv~~A   99 (260)
T 2zat_A           91 GVDILVSNA   99 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=92.70  E-value=0.39  Score=41.00  Aligned_cols=83  Identities=16%  Similarity=0.144  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC------------HHHHHHHHHHhcCC-CCeEEEEcCccccccccc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s------------~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~  204 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.+|.+            .+.++......... .++.++.+|+.+..--+.
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   88 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALES   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            56789999977653   445555669999999986            55555554444333 489999999987543333


Q ss_pred             hhhHHHhhcCCCCccEEEEcC
Q 023482          205 MLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      .++.+.  ...+..|++|.|.
T Consensus        89 ~~~~~~--~~~g~id~lv~nA  107 (281)
T 3s55_A           89 FVAEAE--DTLGGIDIAITNA  107 (281)
T ss_dssp             HHHHHH--HHHTCCCEEEECC
T ss_pred             HHHHHH--HhcCCCCEEEECC
Confidence            333222  2235789999874

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=92.59  E-value=0.28  Score=42.89  Aligned_cols=71  Identities=15%  Similarity=0.237  Sum_probs=46.7

Q ss_pred             HHHHHHhc-----CCCCCEEEEEcC------CccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCc
Q 023482          131 DQLAAAAA-----VQEGDIVLEIGP------GTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF  196 (281)
Q Consensus       131 ~~l~~~l~-----~~~~~~VLDiGc------G~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~  196 (281)
                      ..+.+.++     ...+.+|||+|+      ..|..  .+.+.   ++.|+++|+.+-..         ..+ .+++||.
T Consensus        94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s---------da~-~~IqGD~  161 (344)
T 3r24_A           94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS---------DAD-STLIGDC  161 (344)
T ss_dssp             HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC---------SSS-EEEESCG
T ss_pred             HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc---------CCC-eEEEccc
Confidence            34555553     346789999996      67773  33322   46999999986321         113 4599997


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCC
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P  226 (281)
                      .++             ...+++|+|+|+..
T Consensus       162 ~~~-------------~~~~k~DLVISDMA  178 (344)
T 3r24_A          162 ATV-------------HTANKWDLIISDMY  178 (344)
T ss_dssp             GGE-------------EESSCEEEEEECCC
T ss_pred             ccc-------------ccCCCCCEEEecCC
Confidence            664             23478999999753

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=92.59  E-value=0.33  Score=41.36  Aligned_cols=83  Identities=17%  Similarity=0.126  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeC-CHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++. ++...+.+.+.+... .++.++.+|+.+..--+..++.+.  ...
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~--~~~  104 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVI--ERW  104 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            46788888876553   44455566899999998 777766665555433 488999999987643333333322  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus       105 g~id~lv~nA  114 (269)
T 4dmm_A          105 GRLDVLVNNA  114 (269)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=92.58  E-value=0.35  Score=40.59  Aligned_cols=81  Identities=17%  Similarity=0.259  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+..  ++.++.+|+.+..--+..++.+.  ...+.
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~   83 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD--NGKGMALNVTNPESIEAVLKAIT--DEFGG   83 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG--GEEEEECCTTCHHHHHHHHHHHH--HHHCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--cceEEEEeCCCHHHHHHHHHHHH--HHcCC
Confidence            56788988876553   4455556699999999999888777666542  57888999887543333333322  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        84 iD~lv~nA   91 (248)
T 3op4_A           84 VDILVNNA   91 (248)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=92.52  E-value=0.38  Score=41.10  Aligned_cols=81  Identities=10%  Similarity=0.126  Sum_probs=53.6

Q ss_pred             CEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       143 ~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      +++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+....++.++.+|+.+..--...++.+.  ...+..|
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~iD   99 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLP--EEFATLR   99 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCC--GGGSSCC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHhCCCC
Confidence            678888876553   44555666899999999998887766655433578899999887532222222111  2235689


Q ss_pred             EEEEcC
Q 023482          220 KVVANI  225 (281)
Q Consensus       220 ~Vi~n~  225 (281)
                      ++|.|.
T Consensus       100 ~lvnnA  105 (272)
T 2nwq_A          100 GLINNA  105 (272)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999874

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=92.50  E-value=0.54  Score=41.46  Aligned_cols=95  Identities=17%  Similarity=0.214  Sum_probs=59.2

Q ss_pred             cCCCCCEEEEEcC--CccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          138 AVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       138 ~~~~~~~VLDiGc--G~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+.++++||-+|+  |.|..+..+++. |++|++++.+++.++.+++. ..  . .++  |..+.++    .+.+.....
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~-ga--~-~~~--d~~~~~~----~~~~~~~~~  232 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL-GA--D-ETV--NYTHPDW----PKEVRRLTG  232 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-TC--S-EEE--ETTSTTH----HHHHHHHTT
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc-CC--C-EEE--cCCcccH----HHHHHHHhC
Confidence            5678899999998  678888888775 88999999999999888753 21  1 122  2222111    112211122


Q ss_pred             CCCccEEEEcCCCcccHHHHHHhccCCCC
Q 023482          215 SSGFAKVVANIPFNISTDVIKQLLPMGDI  243 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~  243 (281)
                      ...+|+||.+.. ........++++.++.
T Consensus       233 ~~~~d~vi~~~g-~~~~~~~~~~l~~~G~  260 (343)
T 2eih_A          233 GKGADKVVDHTG-ALYFEGVIKATANGGR  260 (343)
T ss_dssp             TTCEEEEEESSC-SSSHHHHHHHEEEEEE
T ss_pred             CCCceEEEECCC-HHHHHHHHHhhccCCE
Confidence            347999998876 3344444455555544

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=92.48  E-value=0.33  Score=40.85  Aligned_cols=83  Identities=16%  Similarity=0.186  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCc--cccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF--VKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~--~~~~~~d~~~d~v~~~~  213 (281)
                      .++++|=.|.+.|.   ++..|++.|++|+.++.+++.++.+.+.+...  .++.++.+|+  .+.......++.+.  .
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~   88 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA--V   88 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHH--H
Confidence            56789988876553   44455556899999999998887766655422  2788999998  43322222222221  2


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|++|.|.
T Consensus        89 ~~g~id~lv~nA  100 (252)
T 3f1l_A           89 NYPRLDGVLHNA  100 (252)
T ss_dssp             HCSCCSEEEECC
T ss_pred             hCCCCCEEEECC
Confidence            346789999874

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=92.48  E-value=0.54  Score=40.31  Aligned_cols=83  Identities=17%  Similarity=0.208  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeC-CHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++. +++.++...+.+...  +++.++.+|+.+...-+..++.+.  ..
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~  101 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVA--DR  101 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHH--HH
Confidence            46789999976554   44455566899999998 677776666655543  488999999987543333333322  23


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus       102 ~g~iD~lv~nA  112 (281)
T 3v2h_A          102 FGGADILVNNA  112 (281)
T ss_dssp             TSSCSEEEECC
T ss_pred             CCCCCEEEECC
Confidence            46789999874

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=92.48  E-value=0.51  Score=39.76  Aligned_cols=82  Identities=15%  Similarity=0.199  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--C-CeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~-~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+...  + ++.++.+|+.+..--+..++.+.  ..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~   83 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKAR--DL   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH--HT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHH--Hh
Confidence            46788888866543   33444556899999999988776665544321  3 78899999887543222233221  22


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+ .|++|.|.
T Consensus        84 ~g-id~lv~~A   93 (260)
T 2z1n_A           84 GG-ADILVYST   93 (260)
T ss_dssp             TC-CSEEEECC
T ss_pred             cC-CCEEEECC
Confidence            24 89999874

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=92.47  E-value=0.42  Score=40.68  Aligned_cols=81  Identities=15%  Similarity=0.204  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+...  .++.++.+|+.+....+..++.+.  ...+.
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~  101 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG--KDVFVFSANLSDRKSIKQLAEVAE--REMEG  101 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--SSEEEEECCTTSHHHHHHHHHHHH--HHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceEEEEeecCCHHHHHHHHHHHH--HHcCC
Confidence            56789988876553   444555668999999999988877665543  478999999987543333333322  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus       102 iD~lvnnA  109 (266)
T 3grp_A          102 IDILVNNA  109 (266)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=92.47  E-value=0.34  Score=40.94  Aligned_cols=83  Identities=10%  Similarity=0.088  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEE-eCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gv-D~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.+ +.+++..+.+.+.+... .++.++.+|+.+..--+..++.+.  ...
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   84 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAA--DKF   84 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence            56789988877654   445555668999988 67777666666655544 488999999987543333333322  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        85 g~id~lv~nA   94 (259)
T 3edm_A           85 GEIHGLVHVA   94 (259)
T ss_dssp             CSEEEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=92.44  E-value=0.44  Score=41.03  Aligned_cols=82  Identities=10%  Similarity=0.153  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHH
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      .+++||=.|++ |.++..+    ++.|++|+.++.+++.++.+.+.+..      ..++.++.+|+.+...-...++.+.
T Consensus        17 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           17 QGQVAIVTGGA-TGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            46789988865 5555544    44588999999998877766555432      2479999999987543222232221


Q ss_pred             hhcCCCCccEEEEcC
Q 023482          211 RRKSSSGFAKVVANI  225 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~  225 (281)
                        ...+..|+||.|.
T Consensus        96 --~~~g~id~li~~A  108 (303)
T 1yxm_A           96 --DTFGKINFLVNNG  108 (303)
T ss_dssp             --HHHSCCCEEEECC
T ss_pred             --HHcCCCCEEEECC
Confidence              1225689999874

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=92.41  E-value=0.19  Score=43.18  Aligned_cols=83  Identities=17%  Similarity=0.239  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-C-CeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... + .+.++.+|+.+..--+..++.+.  ...
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~  109 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVR--AEF  109 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            56788888876543   34445556899999999998887766555322 2 45899999987653333333332  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus       110 g~iD~lvnnA  119 (281)
T 4dry_A          110 ARLDLLVNNA  119 (281)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            6789999874

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=92.39  E-value=0.33  Score=40.48  Aligned_cols=82  Identities=15%  Similarity=0.157  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|+ +|.++..+++    .|.+|++++.+++.++...+.+... +++.++.+|+.+...-...++.+.  ...
T Consensus        10 ~~~~vlVtGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   86 (255)
T 1fmc_A           10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAI--SKL   86 (255)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHH--Hhc
Confidence            4578887775 4555555544    4889999999988776655554432 478899999887542222222221  122


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|+||.|.
T Consensus        87 ~~~d~vi~~A   96 (255)
T 1fmc_A           87 GKVDILVNNA   96 (255)
T ss_dssp             SSCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=92.38  E-value=0.38  Score=40.49  Aligned_cols=82  Identities=12%  Similarity=0.139  Sum_probs=51.7

Q ss_pred             CCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHH--HHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHM--VGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~--l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      ++++|=.|++.|.   ++..|++.|++|+.++.+++.  ++.+.+.+... .++.++.+|+.+...-+..++.+.  ...
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   79 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAA--EKL   79 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHh
Confidence            4578888865443   334445568999999998776  55555555433 478999999887543222233221  123


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        80 g~iD~lv~nA   89 (258)
T 3a28_C           80 GGFDVLVNNA   89 (258)
T ss_dssp             TCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=92.36  E-value=0.39  Score=40.15  Aligned_cols=83  Identities=16%  Similarity=0.209  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeC-CHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++. +++.++.+.+.+... .++.++.+|+.+...-+..++.+.  ...
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   80 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTV--DVF   80 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            35678877765442   33444456899999999 887776655554432 478899999887543222333221  122


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        81 g~id~lv~nA   90 (246)
T 2uvd_A           81 GQVDILVNNA   90 (246)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999874

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=92.35  E-value=0.38  Score=42.43  Aligned_cols=50  Identities=24%  Similarity=0.295  Sum_probs=41.4

Q ss_pred             HHHHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH
Q 023482          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~  182 (281)
                      .+....+.++++||-+|+|. |.++..+++. |++|+++|.+++-++.+++.
T Consensus       158 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  209 (340)
T 3s2e_A          158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL  209 (340)
T ss_dssp             HHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc
Confidence            34555677899999999975 8888888886 88999999999999988763

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=92.35  E-value=0.54  Score=40.20  Aligned_cols=82  Identities=17%  Similarity=0.194  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++ |.++..++.    .|.+|+.++.+++.++.+.+.+... .++.++.+|+.+...-+..++.+.  ...
T Consensus        43 ~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~~~  119 (285)
T 2c07_A           43 ENKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKIL--TEH  119 (285)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH--HHC
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHH--Hhc
Confidence            45688888865 455555544    4789999999988777666655543 378999999887543222222221  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|+||.|.
T Consensus       120 ~~id~li~~A  129 (285)
T 2c07_A          120 KNVDILVNNA  129 (285)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5689999874

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=92.32  E-value=0.57  Score=40.21  Aligned_cols=82  Identities=20%  Similarity=0.250  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~--~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++. .++..    |++.|++|++++.+++.++.+.+.+..  ..++.++.+|+.+...-...++.+.  ..
T Consensus        25 ~~k~vlITGasg-giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~  101 (302)
T 1w6u_A           25 QGKVAFITGGGT-GLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELI--KV  101 (302)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHH--HH
Confidence            467888888654 44444    445588999999998877665554432  2479999999987543222222221  23


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus       102 ~g~id~li~~A  112 (302)
T 1w6u_A          102 AGHPNIVINNA  112 (302)
T ss_dssp             TCSCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            35789999874

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=92.32  E-value=0.48  Score=39.48  Aligned_cols=78  Identities=15%  Similarity=0.240  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ++++||=.|++.|.   ++..|++.|++|+.++.+++.++...+.+.  .++.++.+|+.+....   ..++   ...+.
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~---~~~~---~~~~~   84 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK--DNYTIEVCNLANKEEC---SNLI---SKTSN   84 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--SSEEEEECCTTSHHHH---HHHH---HTCSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc--cCccEEEcCCCCHHHH---HHHH---HhcCC
Confidence            67789988876553   344455568999999999998887776664  3788999998764321   1222   22356


Q ss_pred             ccEEEEcCC
Q 023482          218 FAKVVANIP  226 (281)
Q Consensus       218 ~d~Vi~n~P  226 (281)
                      .|++|.|.-
T Consensus        85 id~li~~Ag   93 (249)
T 3f9i_A           85 LDILVCNAG   93 (249)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998753

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=92.32  E-value=0.76  Score=40.46  Aligned_cols=100  Identities=16%  Similarity=0.222  Sum_probs=59.5

Q ss_pred             HHHHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHH
Q 023482          133 LAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      .+....+.++++||-+|+| .|..+..+++. |++|+++|.+++-++.+++ +..  . .++  |..+-++    .+.+.
T Consensus       156 ~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lGa--~-~~~--d~~~~~~----~~~~~  225 (339)
T 1rjw_A          156 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-LGA--D-LVV--NPLKEDA----AKFMK  225 (339)
T ss_dssp             HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-TTC--S-EEE--CTTTSCH----HHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-CCC--C-EEe--cCCCccH----HHHHH
Confidence            3344577789999999986 47777777765 8899999999999988875 221  1 122  3222111    11121


Q ss_pred             hhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          211 RRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ...  +.+|+||.+..-........++++.++.+
T Consensus       226 ~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~  257 (339)
T 1rjw_A          226 EKV--GGVHAAVVTAVSKPAFQSAYNSIRRGGAC  257 (339)
T ss_dssp             HHH--SSEEEEEESSCCHHHHHHHHHHEEEEEEE
T ss_pred             HHh--CCCCEEEECCCCHHHHHHHHHHhhcCCEE
Confidence            112  46899998766422223333455554443

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=92.29  E-value=0.46  Score=40.33  Aligned_cols=81  Identities=11%  Similarity=0.208  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+.  .++.++.+|+.+...-+..++.+.  ...+.
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~--~~~g~   80 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE--AEAIAVVADVSDPKAVEAVFAEAL--EEFGR   80 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC--SSEEEEECCTTSHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--CceEEEEcCCCCHHHHHHHHHHHH--HHcCC
Confidence            45788888876543   344445568999999999887776655443  478899999887543222222221  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        81 iD~lvnnA   88 (263)
T 2a4k_A           81 LHGVAHFA   88 (263)
T ss_dssp             CCEEEEGG
T ss_pred             CcEEEECC
Confidence            89999874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=92.28  E-value=0.61  Score=41.74  Aligned_cols=101  Identities=20%  Similarity=0.210  Sum_probs=60.8

Q ss_pred             HHHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHH
Q 023482          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      +....+.++++||=+|+|. |.++..+++. |+ +|+++|.+++-.+.+++.-.   . .++  |..+-++    .+.+.
T Consensus       175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---~-~vi--~~~~~~~----~~~i~  244 (370)
T 4ej6_A          175 VDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA---T-ATV--DPSAGDV----VEAIA  244 (370)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC---S-EEE--CTTSSCH----HHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC---C-EEE--CCCCcCH----HHHHH
Confidence            4566788999999999875 7777777776 77 99999999999998876422   1 122  2111111    11111


Q ss_pred             hh--cCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          211 RR--KSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~--~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ..  ...+.+|+||-...-........+++++++.+
T Consensus       245 ~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~v  280 (370)
T 4ej6_A          245 GPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTV  280 (370)
T ss_dssp             STTSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEE
T ss_pred             hhhhccCCCCCEEEECCCCHHHHHHHHHHhccCCEE
Confidence            10  11247899998755332333344556555544

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=92.25  E-value=0.5  Score=40.19  Aligned_cols=80  Identities=20%  Similarity=0.258  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+...   ++.++.+|+.+..--...++.+.  ...+.
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~   82 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP---GAVFILCDVTQEDDVKTLVSETI--RRFGR   82 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT---TEEEEECCTTSHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---CCeEEEcCCCCHHHHHHHHHHHH--HHcCC
Confidence            46788988866543   344445568999999999887766655443   58889999887543222333221  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        83 iD~lv~nA   90 (270)
T 1yde_A           83 LDCVVNNA   90 (270)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=92.24  E-value=0.43  Score=41.16  Aligned_cols=83  Identities=14%  Similarity=0.167  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHH-HHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQH-MVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~-~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|.+.|.   ++..|++.|++|+.++.++. ..+.+.+..... .++.++.+|+.+..--...++.+.  ...
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~  123 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETV--RQL  123 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            56789999976553   44455556899999999865 344444444443 389999999987543333333222  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus       124 g~iD~lvnnA  133 (291)
T 3ijr_A          124 GSLNILVNNV  133 (291)
T ss_dssp             SSCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999873

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=92.20  E-value=0.43  Score=40.76  Aligned_cols=83  Identities=11%  Similarity=0.106  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~--~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+.+.++.+...+..  ..++.++.+|+.+..--...++.+.  ...
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~  103 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQAL--KEF  103 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            56789999976553   3444555688999999998877666554432  2489999999987543333333222  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus       104 g~id~lv~nA  113 (277)
T 4fc7_A          104 GRIDILINCA  113 (277)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=92.18  E-value=0.49  Score=42.05  Aligned_cols=60  Identities=18%  Similarity=0.142  Sum_probs=44.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-----------------------CCeEEEEcC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-----------------------DQLKVLQED  195 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-----------------------~~v~~~~gD  195 (281)
                      +...|+.+|||.......+...  +..++-||. |+.++.-++.+...                       ++.+++-+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4568999999999999999875  345666665 77777666655432                       478999999


Q ss_pred             cccccc
Q 023482          196 FVKCHI  201 (281)
Q Consensus       196 ~~~~~~  201 (281)
                      +.+.+.
T Consensus       176 L~d~~w  181 (334)
T 1rjd_A          176 LNDITE  181 (334)
T ss_dssp             TTCHHH
T ss_pred             CCCcHH
Confidence            988643

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=92.16  E-value=0.51  Score=40.66  Aligned_cols=60  Identities=12%  Similarity=0.101  Sum_probs=42.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEe-CCHHHHHHHHHHhc-C-CCCeEEEEcCccccc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFA-S-IDQLKVLQEDFVKCH  200 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD-~s~~~l~~a~~~~~-~-~~~v~~~~gD~~~~~  200 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++ .+++.++.+.+.+. . ..++.++.+|+.+..
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVA   73 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcc
Confidence            46788888866553   3344455689999999 99888776665553 2 248999999998765

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=92.15  E-value=0.49  Score=39.92  Aligned_cols=84  Identities=15%  Similarity=0.175  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .++++|=.|++    .|. ++..|++.|++|+.++.++...+.+.+.....+  ++.++.+|+.+...-+..++.+.  .
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK--E   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH--H
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH--H
Confidence            46789999965    343 556667779999999998766665555544332  79999999987654333343332  2


Q ss_pred             CCCCccEEEEcCC
Q 023482          214 SSSGFAKVVANIP  226 (281)
Q Consensus       214 ~~~~~d~Vi~n~P  226 (281)
                      ..+..|++|.|.-
T Consensus        84 ~~g~id~li~~Ag   96 (266)
T 3oig_A           84 QVGVIHGIAHCIA   96 (266)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HhCCeeEEEEccc
Confidence            2357899998753

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=92.12  E-value=0.55  Score=38.88  Aligned_cols=82  Identities=16%  Similarity=0.193  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~--~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++ |.++..+    ++.|.+|+.++.+++.++.....+..  ..++.++.+|+.+...-...++.+.  ..
T Consensus         6 ~~~~vlVtGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   82 (248)
T 2pnf_A            6 QGKVSLVTGST-RGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIY--NL   82 (248)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHH--Hh
Confidence            45678877764 4445444    44588999999998877665554432  2478899999877532222222221  22


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|+||.|.
T Consensus        83 ~~~~d~vi~~A   93 (248)
T 2pnf_A           83 VDGIDILVNNA   93 (248)
T ss_dssp             SSCCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            35789999874

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=92.10  E-value=0.28  Score=42.07  Aligned_cols=81  Identities=15%  Similarity=0.258  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++.| ++..    +++.|.+|++++.+++.++.+...+...  .++.++.+|+.+....+..++.+.  ..
T Consensus        27 ~~k~vlITGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~~  103 (286)
T 1xu9_A           27 QGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG--KL  103 (286)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHH--HH
Confidence            4678998886544 4444    4455889999999998877665544322  268899999887543222222221  12


Q ss_pred             CCCccEEEEc
Q 023482          215 SSGFAKVVAN  224 (281)
Q Consensus       215 ~~~~d~Vi~n  224 (281)
                      .+..|++|.|
T Consensus       104 ~g~iD~li~n  113 (286)
T 1xu9_A          104 MGGLDMLILN  113 (286)
T ss_dssp             HTSCSEEEEC
T ss_pred             cCCCCEEEEC
Confidence            2578999977

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.09  E-value=0.36  Score=41.84  Aligned_cols=83  Identities=12%  Similarity=0.202  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-C---CeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-D---QLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~---~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+... .   ++.++.+|+.+.......++.+.  .
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~  102 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL--A  102 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHH--H
Confidence            46788888865543   33444556899999999988777665554332 2   68899999887543222232221  1


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|++|.|.
T Consensus       103 ~~g~iD~lvnnA  114 (297)
T 1xhl_A          103 KFGKIDILVNNA  114 (297)
T ss_dssp             HHSCCCEEEECC
T ss_pred             hcCCCCEEEECC
Confidence            235789999874

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=92.01  E-value=0.55  Score=38.98  Aligned_cols=81  Identities=11%  Similarity=0.121  Sum_probs=51.7

Q ss_pred             CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHh-cCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERF-ASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~-~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++||=.|++ |.++..+    ++.|++|+.++.++..++.+.+.+ ... .++.++.+|+.+...-...++.+.  ...
T Consensus         2 ~k~vlItGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~   78 (250)
T 2cfc_A            2 SRVAIVTGAS-SGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATM--EQF   78 (250)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HHh
Confidence            3577877855 4445444    445889999999988777666555 222 378999999887543222222221  122


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        79 ~~id~li~~A   88 (250)
T 2cfc_A           79 GAIDVLVNNA   88 (250)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4689999874

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.01  E-value=0.44  Score=40.51  Aligned_cols=83  Identities=13%  Similarity=0.155  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHh---cCC-CCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERF---ASI-DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~---~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+   ... .++.++.+|+.+....+..++.+.  .
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~   82 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL--G   82 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHH--H
Confidence            45678888865442   33444556899999999988877666555   222 378899999887543222232221  1


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|++|.|.
T Consensus        83 ~~g~id~lv~~A   94 (278)
T 1spx_A           83 KFGKLDILVNNA   94 (278)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HcCCCCEEEECC
Confidence            225789999874

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=91.98  E-value=0.58  Score=39.34  Aligned_cols=83  Identities=11%  Similarity=0.106  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++ |.++..+    ++.|++|+.++.++..++.....+... .++.++.+|+.+.......++.+.. ...
T Consensus        13 ~~k~vlITGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~   90 (266)
T 1xq1_A           13 KAKTVLVTGGT-KGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS-MFG   90 (266)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH-HHT
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHH-HhC
Confidence            45688877764 4445444    445889999999988776665554432 3788999998765322222222211 111


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|+||.|.
T Consensus        91 ~~id~li~~A  100 (266)
T 1xq1_A           91 GKLDILINNL  100 (266)
T ss_dssp             TCCSEEEEEC
T ss_pred             CCCcEEEECC
Confidence            5689999874

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=91.90  E-value=0.48  Score=39.12  Aligned_cols=82  Identities=12%  Similarity=0.075  Sum_probs=52.3

Q ss_pred             CCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhc--CCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~--~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++++|=.|++.|.   ++..+++.|++|+.++.+++-++.+.+.+.  ...++.++.+|+.+..--...++.+.  ...+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~g   79 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVL--ERFG   79 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HH--HHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHH--HhcC
Confidence            4578888865443   344445568999999999888777665543  12489999999987542222222221  1225


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        80 ~id~li~~A   88 (235)
T 3l77_A           80 DVDVVVANA   88 (235)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=91.87  E-value=0.53  Score=39.69  Aligned_cols=81  Identities=21%  Similarity=0.191  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++...+.+.  .++.++.+|+.+..--+..++.+.  ...+.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~--~~~g~   86 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE--NGGFAVEVDVTKRASVDAAMQKAI--DALGG   86 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCT--TCCEEEECCTTCHHHHHHHHHHHH--HHHTC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--cCCeEEEEeCCCHHHHHHHHHHHH--HHcCC
Confidence            46789988865443   334444568999999999887766554443  267888999877432222222221  12256


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        87 iD~lv~~A   94 (263)
T 3ak4_A           87 FDLLCANA   94 (263)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=91.82  E-value=0.53  Score=39.75  Aligned_cols=83  Identities=16%  Similarity=0.174  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++..+.+.+.+...   .++.++.+|+.+..--...++.+.  ..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~   83 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVV--DH   83 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHH--HH
Confidence            46788888865443   33444556899999999988776655555431   368899999887532222222221  12


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        84 ~g~id~lv~~A   94 (267)
T 2gdz_A           84 FGRLDILVNNA   94 (267)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25689999875

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=91.81  E-value=0.26  Score=42.17  Aligned_cols=83  Identities=10%  Similarity=0.073  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=-|.+.|.   .+..+++.|++|+.++.+++..+.+.+..+..+++.++.+|+.+..-....++.+.  ...+.
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~--~~~G~   83 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTI--ATFGR   83 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHH--HHhCC
Confidence            57889998988775   45666777999999999876555444433334588999999887543333333322  33477


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|-
T Consensus        84 iDiLVNnA   91 (258)
T 4gkb_A           84 LDGLVNNA   91 (258)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999873

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=91.81  E-value=0.5  Score=40.08  Aligned_cols=82  Identities=10%  Similarity=0.071  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCCccHHHHH----HHHcCCEEEEEeC-CHHHHHHHHHHhcC--CCCeEEEEcCcccc----ccccchhhHH
Q 023482          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEK-DQHMVGLVRERFAS--IDQLKVLQEDFVKC----HIRSHMLSLF  209 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~-s~~~l~~a~~~~~~--~~~v~~~~gD~~~~----~~~d~~~d~v  209 (281)
                      .++++|=.|++.| ++..    |++.|++|+.++. +++.++.+.+.+..  ..++.++.+|+.+.    ...+..++.+
T Consensus        10 ~~k~~lVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   88 (276)
T 1mxh_A           10 ECPAAVITGGARR-IGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS   88 (276)
T ss_dssp             -CCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHH
Confidence            4567887776544 4444    4455899999999 88877666555432  24789999999875    3222222222


Q ss_pred             HhhcCCCCccEEEEcC
Q 023482          210 ERRKSSSGFAKVVANI  225 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~  225 (281)
                      .  ...+..|++|.|.
T Consensus        89 ~--~~~g~id~lv~nA  102 (276)
T 1mxh_A           89 F--RAFGRCDVLVNNA  102 (276)
T ss_dssp             H--HHHSCCCEEEECC
T ss_pred             H--HhcCCCCEEEECC
Confidence            1  1235689999874

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=91.80  E-value=0.46  Score=40.35  Aligned_cols=83  Identities=14%  Similarity=0.209  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHh-cC-CCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERF-AS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~-~~-~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|.+.|.   ++..|++.|++|+.++.+++.++.+.+.+ .. ..++.++.+|+.+..--...++.+.  ...
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~   97 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK--EKF   97 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            46788988866543   34444556899999999988776655444 21 2378889999887532222222221  122


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        98 g~iD~lvnnA  107 (267)
T 1vl8_A           98 GKLDTVVNAA  107 (267)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.76  E-value=0.57  Score=40.94  Aligned_cols=98  Identities=9%  Similarity=0.108  Sum_probs=58.1

Q ss_pred             HhcCCCCCEEEEEc--CCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482          136 AAAVQEGDIVLEIG--PGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       136 ~l~~~~~~~VLDiG--cG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      ..++.++++||-.|  .|.|..+..++.. |++|+++|.+++.++.+++. ..  . .++  |..+..+    .+.+...
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~-g~--~-~~~--~~~~~~~----~~~~~~~  204 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA-GA--W-QVI--NYREEDL----VERLKEI  204 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH-TC--S-EEE--ETTTSCH----HHHHHHH
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CC--C-EEE--ECCCccH----HHHHHHH
Confidence            34667889999999  4567677666664 88999999999988888763 21  1 122  2222111    1111111


Q ss_pred             cCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          213 KSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      .....+|++|.+.. ........++++.++.+
T Consensus       205 ~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~i  235 (327)
T 1qor_A          205 TGGKKVRVVYDSVG-RDTWERSLDCLQRRGLM  235 (327)
T ss_dssp             TTTCCEEEEEECSC-GGGHHHHHHTEEEEEEE
T ss_pred             hCCCCceEEEECCc-hHHHHHHHHHhcCCCEE
Confidence            22346899998876 33333344555555443

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=91.63  E-value=0.49  Score=39.68  Aligned_cols=82  Identities=13%  Similarity=0.094  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCccHHHHH----HHH-cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGSLTNV----LLN-AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~-~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|+ +|.++..    |++ .|.+|+.++.++...+.+.+.+... .++.++.+|+.+...-...++.+.  ..
T Consensus         3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~   79 (276)
T 1wma_A            3 GIHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLR--KE   79 (276)
T ss_dssp             CCCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHH--Hh
Confidence            4567887775 4554544    455 6889999999988776665555432 478999999887542222222221  12


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|+||.|.
T Consensus        80 ~g~id~li~~A   90 (276)
T 1wma_A           80 YGGLDVLVNNA   90 (276)
T ss_dssp             HSSEEEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24689999864

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=91.54  E-value=0.51  Score=40.67  Aligned_cols=83  Identities=13%  Similarity=0.157  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCC---EEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHh
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGA---TVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~---~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      .++++|=.|++.|.   ++..+++.|+   +|+.++.+++.++.+.+.+..   ..++.++.+|+.+..-.+..++.+. 
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~-  110 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP-  110 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC-
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH-
Confidence            56789999976553   3334444565   999999999888877666543   2378899999987543322222221 


Q ss_pred             hcCCCCccEEEEcC
Q 023482          212 RKSSSGFAKVVANI  225 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~  225 (281)
                       ...+..|++|.|.
T Consensus       111 -~~~g~iD~lVnnA  123 (287)
T 3rku_A          111 -QEFKDIDILVNNA  123 (287)
T ss_dssp             -GGGCSCCEEEECC
T ss_pred             -HhcCCCCEEEECC
Confidence             2235789999874

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=91.53  E-value=0.62  Score=40.96  Aligned_cols=60  Identities=12%  Similarity=0.101  Sum_probs=42.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEe-CCHHHHHHHHHHhc-C-CCCeEEEEcCccccc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFA-S-IDQLKVLQEDFVKCH  200 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD-~s~~~l~~a~~~~~-~-~~~v~~~~gD~~~~~  200 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++ .+++.++.+.+.+. . ..++.++.+|+.+..
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~  110 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVA  110 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCch
Confidence            46788887766543   3344455689999999 99888777665553 2 247999999998765

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=91.53  E-value=0.85  Score=40.71  Aligned_cols=101  Identities=11%  Similarity=0.110  Sum_probs=60.4

Q ss_pred             HHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ....+.++++||-+|+|. |.++..+++. |+ +|+++|.+++-++.+++. ..  . .++  |..+.+  +...+.+..
T Consensus       186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga--~-~vi--~~~~~~--~~~~~~~~~  257 (374)
T 1cdo_A          186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF-GA--T-DFV--NPNDHS--EPISQVLSK  257 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TC--C-EEE--CGGGCS--SCHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CC--c-eEE--eccccc--hhHHHHHHH
Confidence            345677899999999874 7777777775 77 899999999999888753 21  1 222  222100  011122221


Q ss_pred             hcCCCCccEEEEcCCCcccHHHHHHhccCC-CCc
Q 023482          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMG-DIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~-~~~  244 (281)
                      ... +.+|+||-...-........++++++ +.+
T Consensus       258 ~~~-~g~D~vid~~g~~~~~~~~~~~l~~~~G~i  290 (374)
T 1cdo_A          258 MTN-GGVDFSLECVGNVGVMRNALESCLKGWGVS  290 (374)
T ss_dssp             HHT-SCBSEEEECSCCHHHHHHHHHTBCTTTCEE
T ss_pred             HhC-CCCCEEEECCCCHHHHHHHHHHhhcCCcEE
Confidence            122 47999998766433333444566666 654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=91.53  E-value=0.54  Score=39.09  Aligned_cols=83  Identities=14%  Similarity=0.250  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcccccc--ccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI--RSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~--~d~~~d~v~~~~  213 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.++..++.+.+.+...  .++.++..|......  ....++.+.  .
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~--~   90 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVE--H   90 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHH--H
Confidence            56788988876553   34445556899999999999888777666533  367888888732221  111222221  2


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|++|.|.
T Consensus        91 ~~g~id~lv~nA  102 (247)
T 3i1j_A           91 EFGRLDGLLHNA  102 (247)
T ss_dssp             HHSCCSEEEECC
T ss_pred             hCCCCCEEEECC
Confidence            235789999874

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=91.49  E-value=0.49  Score=40.65  Aligned_cols=77  Identities=21%  Similarity=0.219  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.++...+.+.+.+.  +++.++.+|+.+..--.   .++   ..-+.
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~---~~~---~~~~~   86 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMA--GQVEVRELDLQDLSSVR---RFA---DGVSG   86 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSS--SEEEEEECCTTCHHHHH---HHH---HTCCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc--CCeeEEEcCCCCHHHHH---HHH---HhcCC
Confidence            56788988876543   344445568999999999988776655442  47899999988753211   122   12257


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        87 iD~lv~nA   94 (291)
T 3rd5_A           87 ADVLINNA   94 (291)
T ss_dssp             EEEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=91.41  E-value=0.54  Score=39.45  Aligned_cols=81  Identities=15%  Similarity=0.248  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++...+.+.  .++.++.+|+.+..--...++.+.  ...+.
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~--~~~g~   80 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG--ERSMFVRHDVSSEADWTLVMAAVQ--RRLGT   80 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC--TTEEEECCCTTCHHHHHHHHHHHH--HHHCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC--CceEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence            45678888865442   334444568899999999887776655542  478899999887542222222221  12356


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        81 id~lv~~A   88 (253)
T 1hxh_A           81 LNVLVNNA   88 (253)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=91.37  E-value=0.28  Score=43.95  Aligned_cols=88  Identities=17%  Similarity=0.191  Sum_probs=60.1

Q ss_pred             CEEEEEcCCccHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          143 DIVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~---~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      .+||=+||  |..+..+++   ...+|+..|++.+.++.++.      .+..+..|+.+..   ...+.+      ...|
T Consensus        17 mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~------~~~~~~~d~~d~~---~l~~~~------~~~D   79 (365)
T 3abi_A           17 MKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE------FATPLKVDASNFD---KLVEVM------KEFE   79 (365)
T ss_dssp             CEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT------TSEEEECCTTCHH---HHHHHH------TTCS
T ss_pred             cEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc------cCCcEEEecCCHH---HHHHHH------hCCC
Confidence            47999998  455554444   35699999999988876643      3455667765432   111222      4679


Q ss_pred             EEEEcCCCcccHHHHHHhccCCCCcceE
Q 023482          220 KVVANIPFNISTDVIKQLLPMGDIFSEV  247 (281)
Q Consensus       220 ~Vi~n~P~~~~~~~~~~ll~~~~~~~~~  247 (281)
                      +||+-.|+....++.+.+++.+..+-..
T Consensus        80 vVi~~~p~~~~~~v~~~~~~~g~~yvD~  107 (365)
T 3abi_A           80 LVIGALPGFLGFKSIKAAIKSKVDMVDV  107 (365)
T ss_dssp             EEEECCCGGGHHHHHHHHHHHTCEEEEC
T ss_pred             EEEEecCCcccchHHHHHHhcCcceEee
Confidence            9999888888888999888877765443

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=91.37  E-value=0.62  Score=40.73  Aligned_cols=96  Identities=14%  Similarity=0.080  Sum_probs=57.1

Q ss_pred             hcCCCCCEEEEEc--CCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482          137 AAVQEGDIVLEIG--PGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       137 l~~~~~~~VLDiG--cG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      ..++++++||-+|  .|.|..+..+++. |++|++++.+++-++.+++.-.   . .++..  .+.++    .+.+....
T Consensus       136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga---~-~~~~~--~~~~~----~~~~~~~~  205 (325)
T 3jyn_A          136 YQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGA---W-ETIDY--SHEDV----AKRVLELT  205 (325)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC---S-EEEET--TTSCH----HHHHHHHT
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---C-EEEeC--CCccH----HHHHHHHh
Confidence            4667899999998  3467777777775 8899999999999998875321   1 22221  11111    11121112


Q ss_pred             CCCCccEEEEcCCCcccHHHHHHhccCCCC
Q 023482          214 SSSGFAKVVANIPFNISTDVIKQLLPMGDI  243 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~  243 (281)
                      ....+|+||.+..-.. .....+++.+++.
T Consensus       206 ~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~  234 (325)
T 3jyn_A          206 DGKKCPVVYDGVGQDT-WLTSLDSVAPRGL  234 (325)
T ss_dssp             TTCCEEEEEESSCGGG-HHHHHTTEEEEEE
T ss_pred             CCCCceEEEECCChHH-HHHHHHHhcCCCE
Confidence            3357899998765422 2233344444443

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=91.32  E-value=0.59  Score=39.75  Aligned_cols=82  Identities=16%  Similarity=0.200  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .+++||=.|++ |.++..+    ++.|++|++++.++..++.+.+.+...   .++.++.+|+.+...-+..++.+.  .
T Consensus        31 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~  107 (279)
T 1xg5_A           31 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR--S  107 (279)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH--H
Confidence            46788888865 4444444    445889999999988777665554322   367889999887542222222221  1


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+.+|+||.|.
T Consensus       108 ~~g~iD~vi~~A  119 (279)
T 1xg5_A          108 QHSGVDICINNA  119 (279)
T ss_dssp             HHCCCSEEEECC
T ss_pred             hCCCCCEEEECC
Confidence            225689999874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=91.29  E-value=0.74  Score=40.55  Aligned_cols=96  Identities=20%  Similarity=0.256  Sum_probs=59.8

Q ss_pred             cCCCCCEEEEEcCCc-cHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          138 AVQEGDIVLEIGPGT-GSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~-G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+.++++||-+|+|. |.++..+++.  +.+|+++|.+++-++.+++.-.    -.++..+  + +    ..+.+.....
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa----~~~i~~~--~-~----~~~~v~~~t~  236 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA----DAAVKSG--A-G----AADAIRELTG  236 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC----SEEEECS--T-T----HHHHHHHHHG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC----CEEEcCC--C-c----HHHHHHHHhC
Confidence            567899999999875 7788888875  5799999999999998876321    1222221  1 1    1122222123


Q ss_pred             CCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          215 SSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ...+|+||-...-........+++.+++.+
T Consensus       237 g~g~d~v~d~~G~~~~~~~~~~~l~~~G~i  266 (345)
T 3jv7_A          237 GQGATAVFDFVGAQSTIDTAQQVVAVDGHI  266 (345)
T ss_dssp             GGCEEEEEESSCCHHHHHHHHHHEEEEEEE
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            347999998766442333344555555544

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=91.25  E-value=0.43  Score=40.62  Aligned_cols=81  Identities=15%  Similarity=0.101  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.+|.+++.++.+.+.+.  .++.++.+|+.+..--...++.+.  ...+.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   85 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVG--RGAVHHVVDLTNEVSVRALIDFTI--DTFGR   85 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHC--TTCEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC--CCeEEEECCCCCHHHHHHHHHHHH--HHcCC
Confidence            46789988876553   445556669999999999887776665552  478899999887543333333222  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        86 id~lv~nA   93 (271)
T 3tzq_B           86 LDIVDNNA   93 (271)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=91.21  E-value=1.1  Score=39.95  Aligned_cols=101  Identities=12%  Similarity=0.131  Sum_probs=60.4

Q ss_pred             HHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ....+.++++||-+|+|. |.++..+++. |+ +|+++|.+++-++.+++.-.   . .++  |..+.  .+...+.+..
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa---~-~vi--~~~~~--~~~~~~~v~~  255 (373)
T 2fzw_A          184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA---T-ECI--NPQDF--SKPIQEVLIE  255 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC---S-EEE--CGGGC--SSCHHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC---c-eEe--ccccc--cccHHHHHHH
Confidence            345677899999999874 6677777775 77 89999999999988875321   1 222  22110  0011122222


Q ss_pred             hcCCCCccEEEEcCCCcccHHHHHHhccCC-CCc
Q 023482          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMG-DIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~-~~~  244 (281)
                       ...+.+|+||-...-........++++++ +.+
T Consensus       256 -~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~i  288 (373)
T 2fzw_A          256 -MTDGGVDYSFECIGNVKVMRAALEACHKGWGVS  288 (373)
T ss_dssp             -HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEE
T ss_pred             -HhCCCCCEEEECCCcHHHHHHHHHhhccCCcEE
Confidence             12247999998765432333344566666 554

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=91.16  E-value=0.66  Score=41.55  Aligned_cols=101  Identities=14%  Similarity=0.095  Sum_probs=60.8

Q ss_pred             HHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ....+.++++||=+|+| .|.++..+++. |+ +|+++|.+++-++.+++.    +--.++  |..+.  .+...+.+..
T Consensus       187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~~vi--~~~~~--~~~~~~~i~~  258 (378)
T 3uko_A          187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----GVNEFV--NPKDH--DKPIQEVIVD  258 (378)
T ss_dssp             TTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----TCCEEE--CGGGC--SSCHHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCcEEE--ccccC--chhHHHHHHH
Confidence            44567789999999987 47778888876 77 899999999999887643    211222  21110  0111122222


Q ss_pred             hcCCCCccEEEEcCCCcccHHHHHHhccCC-CCc
Q 023482          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMG-DIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~-~~~  244 (281)
                       ...+.+|+||-...-........+++.++ +.+
T Consensus       259 -~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~i  291 (378)
T 3uko_A          259 -LTDGGVDYSFECIGNVSVMRAALECCHKGWGTS  291 (378)
T ss_dssp             -HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEE
T ss_pred             -hcCCCCCEEEECCCCHHHHHHHHHHhhccCCEE
Confidence             22348999998766433333344566654 544

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=91.13  E-value=0.8  Score=37.87  Aligned_cols=81  Identities=10%  Similarity=0.097  Sum_probs=51.9

Q ss_pred             CCEEEEEcCCccHHHHHHH----HcCC-------EEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHH
Q 023482          142 GDIVLEIGPGTGSLTNVLL----NAGA-------TVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la----~~~~-------~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      +++||=.|++ |.++..++    +.|.       +|+.++.++..++.....+... .++.++.+|+.+...-...++.+
T Consensus         2 ~k~vlITGas-ggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            2 KHILLITGAG-KGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             CEEEEEETTT-SHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence            3467777754 44555544    4577       9999999988877766655443 37889999988753222222222


Q ss_pred             HhhcCCCCccEEEEcC
Q 023482          210 ERRKSSSGFAKVVANI  225 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~  225 (281)
                      .  ...+..|++|.|.
T Consensus        81 ~--~~~g~id~li~~A   94 (244)
T 2bd0_A           81 V--ERYGHIDCLVNNA   94 (244)
T ss_dssp             H--HHTSCCSEEEECC
T ss_pred             H--HhCCCCCEEEEcC
Confidence            1  2235789999874

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=91.10  E-value=0.67  Score=40.96  Aligned_cols=99  Identities=18%  Similarity=0.144  Sum_probs=57.8

Q ss_pred             HHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ...++ ++++||-+|+| .|..+..+++. |+ +|+++|.+++-++.+++.-.   . .++  |..+-++    .+.+..
T Consensus       162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga---~-~~~--~~~~~~~----~~~v~~  230 (348)
T 2d8a_A          162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA---D-YVI--NPFEEDV----VKEVMD  230 (348)
T ss_dssp             TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC---S-EEE--CTTTSCH----HHHHHH
T ss_pred             HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC---C-EEE--CCCCcCH----HHHHHH
Confidence            34466 88999999986 36677777765 77 99999999998888875321   1 122  2211111    112211


Q ss_pred             hcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ......+|+||.+...........+++++++.+
T Consensus       231 ~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~i  263 (348)
T 2d8a_A          231 ITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRV  263 (348)
T ss_dssp             HTTTSCEEEEEECSCCHHHHHHHHHHEEEEEEE
T ss_pred             HcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            122346899998876422223333455554443

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=91.09  E-value=1.1  Score=40.24  Aligned_cols=103  Identities=16%  Similarity=0.123  Sum_probs=60.0

Q ss_pred             HHhc-CCCCCEEEEEcCC-ccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHH
Q 023482          135 AAAA-VQEGDIVLEIGPG-TGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       135 ~~l~-~~~~~~VLDiGcG-~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      ..++ +.++++||-+|+| .|.++..+++. | .+|++++.+++-++.+++. .   --.++..+..+   .+...+.+.
T Consensus       188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l-G---a~~vi~~~~~~---~~~~~~~v~  260 (380)
T 1vj0_A          188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-G---ADLTLNRRETS---VEERRKAIM  260 (380)
T ss_dssp             HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-T---CSEEEETTTSC---HHHHHHHHH
T ss_pred             HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc-C---CcEEEeccccC---cchHHHHHH
Confidence            4456 7788999999976 46677777775 7 5999999999999888742 2   11233221000   001111121


Q ss_pred             hhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          211 RRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      .......+|+||-+...........+++++++.+
T Consensus       261 ~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~i  294 (380)
T 1vj0_A          261 DITHGRGADFILEATGDSRALLEGSELLRRGGFY  294 (380)
T ss_dssp             HHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEE
T ss_pred             HHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            1122336999998776433333344555555544

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=91.06  E-value=1.1  Score=40.02  Aligned_cols=101  Identities=13%  Similarity=0.127  Sum_probs=60.2

Q ss_pred             HHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ....+.++++||-+|+|. |.++..+++. |+ +|+++|.+++.++.+++. ..  . .++  |..+.  .+...+.+..
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga--~-~vi--~~~~~--~~~~~~~~~~  256 (374)
T 2jhf_A          185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV-GA--T-ECV--NPQDY--KKPIQEVLTE  256 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TC--S-EEE--CGGGC--SSCHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC--c-eEe--ccccc--chhHHHHHHH
Confidence            345677899999999874 7777777775 77 899999999998888643 21  1 222  22110  0011122222


Q ss_pred             hcCCCCccEEEEcCCCcccHHHHHHhccCC-CCc
Q 023482          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMG-DIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~-~~~  244 (281)
                       ...+.+|+||-...-........++++++ +.+
T Consensus       257 -~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~i  289 (374)
T 2jhf_A          257 -MSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVS  289 (374)
T ss_dssp             -HTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEE
T ss_pred             -HhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEE
Confidence             12247999998766432333344566666 554

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=91.04  E-value=0.62  Score=41.99  Aligned_cols=47  Identities=21%  Similarity=0.285  Sum_probs=39.4

Q ss_pred             HHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHH
Q 023482          135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE  181 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~  181 (281)
                      ....+.++++||-+|+|. |.++..+++. |+ +|+++|.+++.++.+++
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          179 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            455777899999999875 7788888876 77 79999999999998875

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=90.97  E-value=0.55  Score=39.34  Aligned_cols=82  Identities=15%  Similarity=0.159  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeC-CHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~-s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++ |.++..+    ++.|++|+.++. +++.++...+.+... .++.++.+|+.+.......++.+.  ..
T Consensus         6 ~~k~vlITGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   82 (261)
T 1gee_A            6 EGKVVVITGSS-TGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAI--KE   82 (261)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HH
Confidence            45688887755 4445444    445889999999 877666555544332 378899999887532222222221  12


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        83 ~g~id~li~~A   93 (261)
T 1gee_A           83 FGKLDVMINNA   93 (261)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24689999874

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=90.95  E-value=0.29  Score=41.19  Aligned_cols=81  Identities=15%  Similarity=0.196  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++..+.+.+.+.  .++.++.+|+.+.......++.+.  ...+.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   81 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELG--AAVRFRNADVTNEADATAALAFAK--QEFGH   81 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------CEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence            46788988877653   445555668999999999877665544432  378899999887543333333322  22357


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        82 id~lv~nA   89 (257)
T 3tpc_A           82 VHGLVNCA   89 (257)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=90.92  E-value=0.21  Score=44.02  Aligned_cols=82  Identities=16%  Similarity=0.306  Sum_probs=53.1

Q ss_pred             HHhcCCCCCEEEEEcC--CccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          135 AAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ....+.++++||-.|+  |.|..+..+++. |++|++++.+++-++.+.+.+..  . .++  |..+.++    .+.+..
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~--~-~~~--~~~~~~~----~~~~~~  213 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGF--D-GAI--DYKNEDL----AAGLKR  213 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC--S-EEE--ETTTSCH----HHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC--C-EEE--ECCCHHH----HHHHHH
Confidence            5567889999999998  567777777765 88999999999988887444321  1 222  2222111    122221


Q ss_pred             hcCCCCccEEEEcCC
Q 023482          212 RKSSSGFAKVVANIP  226 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P  226 (281)
                       ...+.+|+||.+.-
T Consensus       214 -~~~~~~d~vi~~~g  227 (336)
T 4b7c_A          214 -ECPKGIDVFFDNVG  227 (336)
T ss_dssp             -HCTTCEEEEEESSC
T ss_pred             -hcCCCceEEEECCC
Confidence             22457999998765

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=90.86  E-value=0.2  Score=45.17  Aligned_cols=77  Identities=5%  Similarity=0.027  Sum_probs=51.4

Q ss_pred             CEEEEEcCCccHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcC---ccc
Q 023482          143 DIVLEIGPGTGSLTNVLLNA------------------GATVLAIEKDQHMVGLVRERFASI---DQLKVLQED---FVK  198 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la~~------------------~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD---~~~  198 (281)
                      -+|+|+||++|..|..+...                  ..+|+.-|+-.+....+-+.+...   .+..|+.|.   +..
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~  132 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence            47999999999988765432                  137888888877777776666531   123444443   333


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcccH
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIST  231 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~  231 (281)
                      -.+            +..++|+|++|..++|.+
T Consensus       133 rlf------------p~~S~d~v~Ss~aLHWls  153 (359)
T 1m6e_X          133 RLF------------PRNTLHFIHSSYSLMWLS  153 (359)
T ss_dssp             CCS------------CTTCBSCEEEESCTTBCS
T ss_pred             ccC------------CCCceEEEEehhhhhhcc
Confidence            333            347789999998888755

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=90.85  E-value=0.47  Score=40.99  Aligned_cols=83  Identities=12%  Similarity=0.088  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC--HHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD--QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s--~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .++++|=.|.+.|.   ++..|++.|++|+.++.+  +...+.+.+..... .++.++.+|+.+....+..++.+.  ..
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~  125 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAR--EA  125 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH--HH
Confidence            56789999976553   444555568999999986  34444444444333 488999999887543333333322  22


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus       126 ~g~iD~lv~nA  136 (294)
T 3r3s_A          126 LGGLDILALVA  136 (294)
T ss_dssp             HTCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            35789999874

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=90.83  E-value=0.64  Score=39.04  Aligned_cols=81  Identities=15%  Similarity=0.138  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+.  .++.++.+|+.+..-....++.+.  ...+.
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~   79 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG--DAARYQHLDVTIEEDWQRVVAYAR--EEFGS   79 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG--GGEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            46788888865443   344445568999999999887766554442  368889999876532222222221  12257


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        80 iD~lv~nA   87 (254)
T 1hdc_A           80 VDGLVNNA   87 (254)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=90.80  E-value=0.85  Score=38.46  Aligned_cols=81  Identities=16%  Similarity=0.165  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++..+.+.+.+.  .++.++.+|+.+..--...++.+.  ...+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~--~~~g~   81 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA--DAARYVHLDVTQPAQWKAAVDTAV--TAFGG   81 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG--GGEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh--cCceEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            46788888866543   334445568999999999887776655543  257889999877542222222221  12257


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        82 iD~lv~~A   89 (260)
T 1nff_A           82 LHVLVNNA   89 (260)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=90.62  E-value=0.75  Score=38.37  Aligned_cols=82  Identities=15%  Similarity=0.102  Sum_probs=51.3

Q ss_pred             CCEEEEEcCCccH---HHHHHHHcCCEEEEEeC-CHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++++|=-|.+.|.   ++..|++.|++|+.++. +++..+.+.+.+... .++.++.+|+.+..--+..++.+.  ...+
T Consensus         4 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g   81 (246)
T 3osu_A            4 TKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVV--SQFG   81 (246)
T ss_dssp             SCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            5677877765543   34445556899999887 556666555554433 488999999987543333333221  2235


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        82 ~id~lv~nA   90 (246)
T 3osu_A           82 SLDVLVNNA   90 (246)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=90.60  E-value=0.76  Score=38.92  Aligned_cols=83  Identities=12%  Similarity=0.068  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEe-CCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD-~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++ .+....+......... .++.++.+|+.+..--+..++.+.  ...
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~  101 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVL--ADF  101 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH--HHc
Confidence            46678877865443   3444455588999998 6666665555444433 489999999987543333333322  222


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus       102 g~id~li~nA  111 (269)
T 3gk3_A          102 GKVDVLINNA  111 (269)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=90.53  E-value=0.44  Score=40.17  Aligned_cols=83  Identities=16%  Similarity=0.176  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHH-HHHHHHHhcC--CCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHM-VGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~-l~~a~~~~~~--~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.++.+++. ++.+.+.+..  ..++.++.+|+.+...-+..++.+.  ..
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~   80 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAV--RQ   80 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHH--Hh
Confidence            35678877865443   334445568999999998766 6555444432  2478889999887543222232221  12


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        81 ~g~iD~lv~~A   91 (260)
T 1x1t_A           81 MGRIDILVNNA   91 (260)
T ss_dssp             HSCCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25789999874

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=90.52  E-value=0.71  Score=40.51  Aligned_cols=97  Identities=21%  Similarity=0.306  Sum_probs=58.0

Q ss_pred             hcCCCCCEEEEEcC--CccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482          137 AAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       137 l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      ..+.++++||-+|+  |.|..+..+++. |++|++++.+++-++.+++.    +.-.++..+  +.++    .+.+....
T Consensus       144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~~~~~~~--~~~~----~~~~~~~~  213 (334)
T 3qwb_A          144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----GAEYLINAS--KEDI----LRQVLKFT  213 (334)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCSEEEETT--TSCH----HHHHHHHT
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCcEEEeCC--CchH----HHHHHHHh
Confidence            36678999999994  567777777775 88999999999998887663    211222221  1111    11221112


Q ss_pred             CCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          214 SSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ....+|+||.+..-.. .....+++++++.+
T Consensus       214 ~~~g~D~vid~~g~~~-~~~~~~~l~~~G~i  243 (334)
T 3qwb_A          214 NGKGVDASFDSVGKDT-FEISLAALKRKGVF  243 (334)
T ss_dssp             TTSCEEEEEECCGGGG-HHHHHHHEEEEEEE
T ss_pred             CCCCceEEEECCChHH-HHHHHHHhccCCEE
Confidence            3457999998765432 33334455555543

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=90.52  E-value=0.62  Score=39.03  Aligned_cols=80  Identities=11%  Similarity=0.086  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+++||=.|++. .++..+    ++.|.+|+.++.++..++.+.+.+.  .++.++.+|+.+..--+..++.+.  ...+
T Consensus        11 ~~k~vlVTGasg-giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~--~~~g   85 (265)
T 2o23_A           11 KGLVAVITGGAS-GLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLG--NNCVFAPADVTSEKDVQTALALAK--GKFG   85 (265)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHH--HHCC
Confidence            467899888754 444444    4458899999998776665554442  478999999887542222222221  1224


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        86 ~id~li~~A   94 (265)
T 2o23_A           86 RVDVAVNCA   94 (265)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            689999874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=90.50  E-value=0.54  Score=42.13  Aligned_cols=48  Identities=23%  Similarity=0.231  Sum_probs=39.6

Q ss_pred             HHHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Q 023482          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (281)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~v~gvD~s~~~l~~a~~  181 (281)
                      +..+.+.++++||-+|+|. |.++..+++. |++|+++|.+++-++.+++
T Consensus       187 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          187 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            3445777899999999984 7777788775 8899999999999988876

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=90.47  E-value=0.95  Score=37.91  Aligned_cols=78  Identities=23%  Similarity=0.311  Sum_probs=49.0

Q ss_pred             EEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       144 ~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      ++|=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+.  +++.++.+|+.+..-.+..++.+.  ...+..|+
T Consensus         2 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~iD~   77 (248)
T 3asu_A            2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG--DNLYIAQLDVRNRAAIEEMLASLP--AEWCNIDI   77 (248)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHTSC--TTTCCCCE
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--CceEEEEcCCCCHHHHHHHHHHHH--HhCCCCCE
Confidence            45555654332   445555668999999999988776665553  478899999877432222222111  22357899


Q ss_pred             EEEcC
Q 023482          221 VVANI  225 (281)
Q Consensus       221 Vi~n~  225 (281)
                      +|.|.
T Consensus        78 lvnnA   82 (248)
T 3asu_A           78 LVNNA   82 (248)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99874

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=90.46  E-value=1.5  Score=39.57  Aligned_cols=97  Identities=19%  Similarity=0.218  Sum_probs=58.0

Q ss_pred             cCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          138 AVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+.++++||=+|+|. |.++..+++. |+ +|+++|.+++-++.+++.-.    -.++.  ..+-+    ..+.+.....
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa----~~vi~--~~~~~----~~~~i~~~t~  279 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA----DHVID--PTKEN----FVEAVLDYTN  279 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC----SEEEC--TTTSC----HHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC----CEEEc--CCCCC----HHHHHHHHhC
Confidence            467889999999864 6677777775 77 99999999999998876422    12222  11111    1122222133


Q ss_pred             CCCccEEEEcCCCc-ccHHHHHHhc----cCCCCc
Q 023482          215 SSGFAKVVANIPFN-ISTDVIKQLL----PMGDIF  244 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~-~~~~~~~~ll----~~~~~~  244 (281)
                      ...+|+||-...-. ........++    ..++.+
T Consensus       280 g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~i  314 (404)
T 3ip1_A          280 GLGAKLFLEATGVPQLVWPQIEEVIWRARGINATV  314 (404)
T ss_dssp             TCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEE
T ss_pred             CCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEE
Confidence            44799999876543 1222233333    666654

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=90.45  E-value=0.54  Score=40.30  Aligned_cols=83  Identities=12%  Similarity=0.097  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCH-HHHHHHHHHhc--CCCCeEEEEcCccc----cccccchhhHHH
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ-HMVGLVRERFA--SIDQLKVLQEDFVK----CHIRSHMLSLFE  210 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~-~~l~~a~~~~~--~~~~v~~~~gD~~~----~~~~d~~~d~v~  210 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.++ +.++.+.+.+.  ...++.++.+|+.+    ....+..++.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~  101 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCF  101 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHH
Confidence            46788888876553   3444455689999999987 66655554443  22478999999987    322222222221


Q ss_pred             hhcCCCCccEEEEcC
Q 023482          211 RRKSSSGFAKVVANI  225 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~  225 (281)
                        ...+..|++|.|.
T Consensus       102 --~~~g~iD~lvnnA  114 (288)
T 2x9g_A          102 --RAFGRCDVLVNNA  114 (288)
T ss_dssp             --HHHSCCCEEEECC
T ss_pred             --HhcCCCCEEEECC
Confidence              1235789999874

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.33  E-value=0.72  Score=39.12  Aligned_cols=83  Identities=16%  Similarity=0.172  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeC-CHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++. +++..+...+.+... .++.++.+|+.+..--...++.+.  ...
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   94 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAV--AHF   94 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence            56789988876554   44555566899999876 455555555554433 489999999987543333333322  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        95 g~id~lvnnA  104 (270)
T 3is3_A           95 GHLDIAVSNS  104 (270)
T ss_dssp             SCCCEEECCC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=90.30  E-value=0.3  Score=42.78  Aligned_cols=83  Identities=14%  Similarity=0.209  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC----------HHHHHHHHHHhcCC-CCeEEEEcCccccccccchh
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD----------QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML  206 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s----------~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~  206 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.+|.+          ...++.....+... .++.++.+|+.+..-....+
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~  105 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLI  105 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence            57789988876553   445555669999999987          55555555544433 47889999988754333333


Q ss_pred             hHHHhhcCCCCccEEEEcC
Q 023482          207 SLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       207 d~v~~~~~~~~~d~Vi~n~  225 (281)
                      +.+.  ...+..|++|.|.
T Consensus       106 ~~~~--~~~g~iD~lv~nA  122 (322)
T 3qlj_A          106 QTAV--ETFGGLDVLVNNA  122 (322)
T ss_dssp             HHHH--HHHSCCCEEECCC
T ss_pred             HHHH--HHcCCCCEEEECC
Confidence            3322  2235789999874

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=90.17  E-value=0.38  Score=40.08  Aligned_cols=83  Identities=14%  Similarity=0.159  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCC-HHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s-~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++ |.++..++    +.|.+|++++.+ ++.++.+.+.+... .++.++.+|+.+...-...++.+.  ..
T Consensus         6 ~~k~vlVTGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   82 (258)
T 3afn_B            6 KGKRVLITGSS-QGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFV--AK   82 (258)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HH
Confidence            45688877754 55555544    458899999998 66555544444322 378999999887542222222221  12


Q ss_pred             CCCccEEEEcCC
Q 023482          215 SSGFAKVVANIP  226 (281)
Q Consensus       215 ~~~~d~Vi~n~P  226 (281)
                      .+..|+||.|.-
T Consensus        83 ~g~id~vi~~Ag   94 (258)
T 3afn_B           83 FGGIDVLINNAG   94 (258)
T ss_dssp             HSSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            246899998753

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=90.09  E-value=0.89  Score=38.02  Aligned_cols=83  Identities=20%  Similarity=0.214  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--------CCeEEEEcCccccccccchhhHH
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--------DQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--------~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      .+++||=.|++.|.   ++..|++.|.+|+.++.++..++...+.+...        .++.++.+|+.+...-...++.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   85 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQV   85 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHH
Confidence            45688888865443   33344455889999999988776655544321        36889999988753222222222


Q ss_pred             HhhcCCCCc-cEEEEcC
Q 023482          210 ERRKSSSGF-AKVVANI  225 (281)
Q Consensus       210 ~~~~~~~~~-d~Vi~n~  225 (281)
                      .  ...+.. |+||.|.
T Consensus        86 ~--~~~g~i~d~vi~~A  100 (264)
T 2pd6_A           86 Q--ACFSRPPSVVVSCA  100 (264)
T ss_dssp             H--HHHSSCCSEEEECC
T ss_pred             H--HHhCCCCeEEEECC
Confidence            1  112345 9999874

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=90.07  E-value=0.84  Score=38.30  Aligned_cols=85  Identities=15%  Similarity=0.218  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHH---cCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHh
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLN---AGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~---~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      .++++|=.|++.|.   ++..|++   .|++|+.++.+++.++.+.+.+..   ..++.++.+|+.+..-....++.+..
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            35678878876553   4455555   688999999999887766655532   23688999999875433333333211


Q ss_pred             hcCCCCcc--EEEEcC
Q 023482          212 RKSSSGFA--KVVANI  225 (281)
Q Consensus       212 ~~~~~~~d--~Vi~n~  225 (281)
                      ....+.+|  ++|.|.
T Consensus        85 ~~~~g~~d~~~lvnnA  100 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNA  100 (259)
T ss_dssp             SCCCTTCCEEEEEECC
T ss_pred             ccccccCCccEEEECC
Confidence            00234667  888763

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=90.04  E-value=1.3  Score=38.70  Aligned_cols=98  Identities=16%  Similarity=0.200  Sum_probs=58.3

Q ss_pred             HhcCCCCCEEEEEcC--CccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482          136 AAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       136 ~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      ...+.++++||-.|+  |.|..+..++.. |++|+++|.+++.++.+++. ..  . .++  |..+..+    .+.+...
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~-g~--~-~~~--d~~~~~~----~~~i~~~  209 (333)
T 1wly_A          140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL-GC--H-HTI--NYSTQDF----AEVVREI  209 (333)
T ss_dssp             TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-TC--S-EEE--ETTTSCH----HHHHHHH
T ss_pred             hhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC--C-EEE--ECCCHHH----HHHHHHH
Confidence            345678899999995  677777777765 88999999999888888653 21  1 122  2222111    1112111


Q ss_pred             cCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          213 KSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      .....+|++|.+..-.. .....+++++++.+
T Consensus       210 ~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~i  240 (333)
T 1wly_A          210 TGGKGVDVVYDSIGKDT-LQKSLDCLRPRGMC  240 (333)
T ss_dssp             HTTCCEEEEEECSCTTT-HHHHHHTEEEEEEE
T ss_pred             hCCCCCeEEEECCcHHH-HHHHHHhhccCCEE
Confidence            22346899998865432 33333455555443

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=90.01  E-value=0.73  Score=38.73  Aligned_cols=82  Identities=18%  Similarity=0.187  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeC-CHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~-s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++ |.++..+    ++.|.+|++++. ++..++...+.+... .++.++.+|+.+...-...++.+.  ..
T Consensus        20 ~~k~vlItGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   96 (274)
T 1ja9_A           20 AGKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAV--SH   96 (274)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HH
Confidence            45688877754 5555554    445889999999 777766655544432 478899999887532222222211  12


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        97 ~~~~d~vi~~A  107 (274)
T 1ja9_A           97 FGGLDFVMSNS  107 (274)
T ss_dssp             HSCEEEEECCC
T ss_pred             cCCCCEEEECC
Confidence            24689999874

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=89.82  E-value=0.97  Score=37.12  Aligned_cols=78  Identities=14%  Similarity=0.140  Sum_probs=50.1

Q ss_pred             CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++||=.|++ |.++..+    ++.|.+|++++.+++.++.....+.   ++.++.+|+.+..--+..++.+.  ...+.
T Consensus         5 ~k~vlVtGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~--~~~~~   78 (234)
T 2ehd_A            5 KGAVLITGAS-RGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE---GALPLPGDVREEGDWARAVAAME--EAFGE   78 (234)
T ss_dssp             CCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST---TCEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---hceEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence            4578877755 4455444    4458899999999887766555443   68899999887543222222221  11246


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        79 id~li~~A   86 (234)
T 2ehd_A           79 LSALVNNA   86 (234)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=89.78  E-value=0.69  Score=39.12  Aligned_cols=83  Identities=6%  Similarity=0.126  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC---HHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD---QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s---~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .++++|=.|.+.|.   ++..|++.|++|+.++.+   .+.++.+.+.+... .++.++.+|+.+..--...++.+.  .
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~   87 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE--K   87 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--H
Confidence            56789988877653   334444558899998764   45555555555443 378999999987543333333332  2


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|++|.|.
T Consensus        88 ~~g~iD~lvnnA   99 (262)
T 3ksu_A           88 EFGKVDIAINTV   99 (262)
T ss_dssp             HHCSEEEEEECC
T ss_pred             HcCCCCEEEECC
Confidence            235789999874

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=89.78  E-value=0.61  Score=38.64  Aligned_cols=82  Identities=17%  Similarity=0.175  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCccHHHHH----HHHcCCEEEEE-eCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gv-D~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .+++||=.|++ |.++..    |++.|++|+.+ +.++..++...+.+... .++.++.+|+.+...-...++.+.  ..
T Consensus         4 ~~~~vlItGas-ggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~   80 (247)
T 2hq1_A            4 KGKTAIVTGSS-RGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAM--DA   80 (247)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHH--HH
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--Hh
Confidence            35678888865 444444    44558899999 56665555544444322 478999999887542222222221  12


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        81 ~~~~d~vi~~A   91 (247)
T 2hq1_A           81 FGRIDILVNNA   91 (247)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24689999874

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=89.77  E-value=1.1  Score=38.23  Aligned_cols=83  Identities=13%  Similarity=0.138  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC-HHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s-~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+ .+..+.+.+.+... .++.++.+|+.+..--...++.+.  ...
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~  107 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETV--EAL  107 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence            56789999987654   445556668999998654 45555555444433 488999999987543332333221  223


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus       108 g~iD~lvnnA  117 (271)
T 3v2g_A          108 GGLDILVNSA  117 (271)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCcEEEECC
Confidence            5789999874

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=89.75  E-value=0.6  Score=39.68  Aligned_cols=81  Identities=14%  Similarity=0.183  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .+++||=.|++.|.   ++..|++.|.+|++++.+++.++.......  +++.++.+|+.+...-+..++.+.  ...+.
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g~   79 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYP--DRAEAISLDVTDGERIDVVAADVL--ARYGR   79 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCT--TTEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--CCceEEEeeCCCHHHHHHHHHHHH--HhCCC
Confidence            35678877765442   334445568999999999887766555432  489999999987543222222221  22356


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        80 id~lv~~A   87 (281)
T 3m1a_A           80 VDVLVNNA   87 (281)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89999874

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=89.73  E-value=0.71  Score=39.13  Aligned_cols=83  Identities=14%  Similarity=0.150  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEE-eCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gv-D~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++.|.   ++..|++.|++|+.+ ..+++..+...+.+... .++.++.+|+.+..-.+..++.+.  ...
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~  102 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVD--RQF  102 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HhC
Confidence            46788888865543   334445558898776 77887777666655433 488999999987543333333222  122


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus       103 g~id~li~nA  112 (272)
T 4e3z_A          103 GRLDGLVNNA  112 (272)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5789999874

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=89.73  E-value=1.3  Score=36.63  Aligned_cols=79  Identities=11%  Similarity=0.207  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCe-EEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQL-KVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v-~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=.|++ |.++..+    ++.|.+|++++.+++.++.+.+.+.  .++ .++.+|+.+...-...++.+.  . .
T Consensus        10 ~~k~vlITGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~--~-~   83 (254)
T 2wsb_A           10 DGACAAVTGAG-SGIGLEICRAFAASGARLILIDREAAALDRAAQELG--AAVAARIVADVTDAEAMTAAAAEAE--A-V   83 (254)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEEECCTTCHHHHHHHHHHHH--H-H
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--ccceeEEEEecCCHHHHHHHHHHHH--h-h
Confidence            46788888865 4445444    4458899999999887766655542  256 889999877542222222221  1 2


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        84 ~~id~li~~A   93 (254)
T 2wsb_A           84 APVSILVNSA   93 (254)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCcEEEECC
Confidence            5689999874

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=89.67  E-value=0.96  Score=38.25  Aligned_cols=79  Identities=16%  Similarity=0.212  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .++++|=.|++.|.   ++..+++.|++|+.++.+++.++.+.+.+...   ..+.++.+|+.+...-   ..++   ..
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~---~~~~---~~   82 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGC---QDVI---EK   82 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHH---HHHH---HH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHH---HHHH---Hh
Confidence            46788888876543   34445556899999999998877666554321   3677888898764321   1222   23


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        83 ~g~id~lv~nA   93 (267)
T 3t4x_A           83 YPKVDILINNL   93 (267)
T ss_dssp             CCCCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            46789999874

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=89.66  E-value=0.35  Score=44.56  Aligned_cols=64  Identities=25%  Similarity=0.384  Sum_probs=44.5

Q ss_pred             ccccCCHHHHH--------HHHHHhcCCCCCEEEEEcCCccHHHHHHHHc----C---CEEEEEeCCHHHHHHHHHHhc
Q 023482          121 QHYMLNSEIND--------QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G---ATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       121 ~~~~~~~~~~~--------~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~---~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      .+|++.+++..        ++.+.........|+|+|+|.|.++..+...    +   .+++.||+|+.+.+.-++++.
T Consensus       109 GDFiTAPeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          109 SDFVTAPELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             -CCSSCGGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCccCchhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            57999877532        2333222222468999999999988887652    2   389999999998877776664

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=89.47  E-value=0.35  Score=41.52  Aligned_cols=83  Identities=14%  Similarity=0.144  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHH-------HHHHHHHHhcC-CCCeEEEEcCccccccccchhhHH
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQH-------MVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~-------~l~~a~~~~~~-~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      .++++|=.|++.|.   ++..|++.|++|+.++.+++       .++.+.+.+.. ..++.++.+|+.+..--...++.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   87 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAKT   87 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            46789988877663   44455556899999999865       23333333322 247899999998754333333332


Q ss_pred             HhhcCCCCccEEEEcC
Q 023482          210 ERRKSSSGFAKVVANI  225 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~  225 (281)
                      .  ...+..|++|.|.
T Consensus        88 ~--~~~g~id~lvnnA  101 (285)
T 3sc4_A           88 V--EQFGGIDICVNNA  101 (285)
T ss_dssp             H--HHHSCCSEEEECC
T ss_pred             H--HHcCCCCEEEECC
Confidence            2  2235789999874

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=89.46  E-value=0.65  Score=45.22  Aligned_cols=33  Identities=27%  Similarity=0.184  Sum_probs=25.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc------------C--CEEEEEeCCH
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA------------G--ATVLAIEKDQ  173 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~------------~--~~v~gvD~s~  173 (281)
                      +.-+|+|+|.|+|+..+.+.+.            .  .+++++|..|
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p  104 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYP  104 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCC
Confidence            3458999999999987776542            1  3799999944

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=89.38  E-value=3.6  Score=30.33  Aligned_cols=72  Identities=15%  Similarity=0.188  Sum_probs=45.5

Q ss_pred             CEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      .+|+=+|+  |.++..++    +.+.+|+.+|.+++.++.++...    .+.++.+|..+...       +.. .....+
T Consensus         5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~----~~~~~~~d~~~~~~-------l~~-~~~~~~   70 (140)
T 1lss_A            5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKT-------LED-AGIEDA   70 (140)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHH-------HHH-TTTTTC
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc----CcEEEEcCCCCHHH-------HHH-cCcccC
Confidence            57888876  55555444    34789999999998877665432    45677888654321       100 112467


Q ss_pred             cEEEEcCCCc
Q 023482          219 AKVVANIPFN  228 (281)
Q Consensus       219 d~Vi~n~P~~  228 (281)
                      |+|+...|..
T Consensus        71 d~vi~~~~~~   80 (140)
T 1lss_A           71 DMYIAVTGKE   80 (140)
T ss_dssp             SEEEECCSCH
T ss_pred             CEEEEeeCCc
Confidence            9988887754

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=89.28  E-value=0.47  Score=38.10  Aligned_cols=45  Identities=16%  Similarity=0.248  Sum_probs=35.0

Q ss_pred             hcCCCCCEEEEEcC--CccHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Q 023482          137 AAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE  181 (281)
Q Consensus       137 l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~  181 (281)
                      ..+.++++||..|+  |.|..+..++.. |++|+++|.+++..+.+++
T Consensus        34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A           34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred             hCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            45678899999994  566666666654 8899999999988877653

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=89.26  E-value=1.1  Score=36.73  Aligned_cols=73  Identities=19%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             EEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          145 VLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       145 VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      |+=+|+  |.++..+++    .+.+|+.+|.+++.++......    ++.++.||+.+...-       .. ..-...|.
T Consensus         3 iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~----~~~~i~gd~~~~~~l-------~~-a~i~~ad~   68 (218)
T 3l4b_C            3 VIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL----KATIIHGDGSHKEIL-------RD-AEVSKNDV   68 (218)
T ss_dssp             EEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS----SSEEEESCTTSHHHH-------HH-HTCCTTCE
T ss_pred             EEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc----CCeEEEcCCCCHHHH-------Hh-cCcccCCE
Confidence            555554  666666655    4789999999999887765432    467899998764311       10 12356788


Q ss_pred             EEEcCCCcccH
Q 023482          221 VVANIPFNIST  231 (281)
Q Consensus       221 Vi~n~P~~~~~  231 (281)
                      |+...+-....
T Consensus        69 vi~~~~~d~~n   79 (218)
T 3l4b_C           69 VVILTPRDEVN   79 (218)
T ss_dssp             EEECCSCHHHH
T ss_pred             EEEecCCcHHH
Confidence            88877654433

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=89.23  E-value=1  Score=40.15  Aligned_cols=51  Identities=18%  Similarity=0.205  Sum_probs=37.7

Q ss_pred             HHHHhcCC-CCCEEEEEcCCc-cHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHh
Q 023482          133 LAAAAAVQ-EGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERF  183 (281)
Q Consensus       133 l~~~l~~~-~~~~VLDiGcG~-G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~  183 (281)
                      .+....+. ++++||=+|+|. |..+..+++. |++|++++.+++-++.+++.+
T Consensus       178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l  231 (366)
T 1yqd_A          178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF  231 (366)
T ss_dssp             HHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS
T ss_pred             HHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence            34445666 889999999763 5566666665 889999999998887776444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d1i4wa_	322	c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake	3e-30
d1zq9a1	278	c.66.1.24 (A:36-313) Probable dimethyladenosine tr	4e-18
d1qyra_	252	c.66.1.24 (A:) High level kasugamycin resistance p	2e-16
d1yuba_	245	c.66.1.24 (A:) rRNA adenine dimethylase {Streptoco	3e-14
d1qama_	235	c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus	8e-12
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	6e-08
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	1e-06
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	5e-06
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	2e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	4e-05
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	1e-04
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-04
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	2e-04
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	4e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	5e-04
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	7e-04
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	0.001
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	0.002
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	0.003

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (284), Expect = 3e-30
 Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 25/189 (13%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLLNAGAT--V 166
            +   G  Y+ N  + +++     +       E   VL++ PG G  + +  N       
Sbjct: 11  LKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY 70

Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA------- 219
             +EK   +   +  +F     L++L+ D       S+++            +       
Sbjct: 71  SLLEKRSSLYKFLNAKFEG-SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKF 129

Query: 220 KVVANIPFNISTDVIKQLL--------PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP 271
             VAN+    S  +I Q L               +++L +   TA +L+           
Sbjct: 130 LTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLL-ARPGMHSRSK 188

Query: 272 INIFVNFYS 280
            ++    ++
Sbjct: 189 CSVVREAFT 197

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} Length = 278

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 4e-18
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 17/141 (12%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           QH + N  I + +   AA++  D+VLE+GPGTG++T  LL     V+A E D  +V  + 
Sbjct: 1   QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELH 60

Query: 181 ERFA---SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237
           +R        +L+VL  D +K  +                    VAN+P+ IS+  + +L
Sbjct: 61  KRVQGTPVASKLQVLVGDVLKTDLPFFD--------------TCVANLPYQISSPFVFKL 106

Query: 238 LPMGDIFSEVVLLLQEETALR 258
           L     F   +L+ Q E ALR
Sbjct: 107 LLHRPFFRCAILMFQREFALR 127

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

 Score = 74.6 bits (182), Expect = 2e-16
 Identities = 32/159 (20%), Positives = 72/159 (45%), Gaps = 8/159 (5%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +  + D + +A   Q+G  ++EIGPG  +LT  +      +  IE D+ +   ++
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
                  +L + Q+D +  +       + +         +V  N+P+NIST ++  L   
Sbjct: 61  THPFLGPKLTIYQQDAMTFNFGELAEKMGQP-------LRVFGNLPYNISTPLMFHLFSY 113

Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
            D  +++  +LQ+E     +     +  Y  +++   +Y
Sbjct: 114 TDAIADMHFMLQKEVV-NRLVAGPNSKAYGRLSVMAQYY 151

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

 Score = 68.4 bits (166), Expect = 3e-14
 Identities = 21/91 (23%), Positives = 42/91 (46%)

Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
                 Q+++ + ++ +Q+     ++E D V EIG G G LT  L      V +IE D H
Sbjct: 3   KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH 62

Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHM 205
           +  L  E+     ++ ++ +D ++    +  
Sbjct: 63  LFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} Length = 235

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

 Score = 61.4 bits (148), Expect = 8e-12
 Identities = 20/85 (23%), Positives = 36/85 (42%)

Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
           Q+++ +    D++     + E D + EIG G G  T  L+     V AIE D  +     
Sbjct: 1   QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTE 60

Query: 181 ERFASIDQLKVLQEDFVKCHIRSHM 205
            +    D  +VL +D ++     + 
Sbjct: 61  NKLVDHDNFQVLNKDILQFKFPKNQ 85

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 49.4 bits (117), Expect = 6e-08
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 5/148 (3%)

Query: 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
           E+   +   A   + D+ +++G GTG +T  L      V AI+++   +           
Sbjct: 20  EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG 79

Query: 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEV 247
                  D V         +L +                  I   +  +L P G I    
Sbjct: 80  -----LGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA 134

Query: 248 VLLLQEETALRLVEPSLRTSEYRPINIF 275
           +LL  +  A+  +           +NI 
Sbjct: 135 ILLETKFEAMECLRDLGFDVNITELNIA 162

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
           +L   AA++  + VL++  G G + N        V+A +  + ++
Sbjct: 6   KLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDIL 50

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.2 bits (103), Expect = 5e-06
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
           H+ L       +   A  +    VL+IG G G             + ++  + M
Sbjct: 2   HHSL-----GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEM 50

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 12/152 (7%)

Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFA--- 184
           + + +   +  GD VLE G G+G ++  L  A      V++ E  +    L ++ +    
Sbjct: 88  NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 147

Query: 185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI--PFNISTDVIKQLLPMGD 242
              +L  ++E           +S       S  F  V  ++  P          L   G 
Sbjct: 148 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGV 207

Query: 243 IFSEVVLLLQEETALRLVEPSLRTSEYRPINI 274
                V ++     + L++  +RT E      
Sbjct: 208 C---AVYVVNITQVIELLD-GIRTCELALSCE 235

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEK 171
            G H  ML  E+      + +     + +  +VL++G GTG L      AGA  V+ IE 
Sbjct: 5   FGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIEC 64

Query: 172 DQHM 175
               
Sbjct: 65  SSIS 68

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK 171
            G H  ML  +I      D +     + +  +VL++G GTG L+     AGA  VL +++
Sbjct: 7   YGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQ 66

Query: 172 DQHMV 176
            + + 
Sbjct: 67  SEILY 71

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFA 184
            +     ++ G  +LE+G G+G++++ +   LN   T+  +E+D+  +    +  +
Sbjct: 76  YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 113 RFPRKSLGQHYMLN---SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLA 168
           R    S  +H + N    E    L     ++ G  +L++G G+G +      + G T   
Sbjct: 2   RIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTG 61

Query: 169 IEKDQHMVGLVRERF 183
           I+         + R 
Sbjct: 62  IDMSSLFTAQAKRRA 76

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 3/83 (3%)

Query: 127 SEINDQLAA---AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF 183
           SE+N  L     +  V  G  VL    G     + L   G  V+  E  +  V       
Sbjct: 3   SEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTER 62

Query: 184 ASIDQLKVLQEDFVKCHIRSHML 206
                +    +  V       + 
Sbjct: 63  GEQPHITSQGDFKVYAAPGIEIW 85

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK 171
            G H  ML   +      + +     + +  IVL++G GTG L+      GA  V+ ++ 
Sbjct: 10  YGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDM 69

Query: 172 DQHM 175
              +
Sbjct: 70  SSII 73

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 11/144 (7%)

Query: 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
           +G      +E    L           VL++  GTG  + +L+  G +V +++    M+  
Sbjct: 34  IGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKY 93

Query: 179 VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL 238
             +   +    +  +  F K  I        ++   +      V         +    L 
Sbjct: 94  ALKERWN----RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI-----CLGNSFAHLP 144

Query: 239 PMGDIFSEVVLLLQEETALRLVEP 262
                 SE  L L+      +V P
Sbjct: 145 DSKGDQSEHRLALKN--IASMVRP 166

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
               +LE+G   G  T+ L      +  +E  +  
Sbjct: 20  RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEA 54

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 132 QLAAAAA------VQEGDIVLEIGPGTGSLTNVL--LNAGATVLAIEKDQHMVGLVRERF 183
           +LAA         ++  + VL +G  +G+  + L  +     + A+E        + E  
Sbjct: 41  KLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELV 100

Query: 184 ASIDQLKVLQEDFVKCH 200
              + +  L  D  K  
Sbjct: 101 RERNNIIPLLFDASKPW 117

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 139 VQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERF 183
            + GD VL++G G G        AG      ++  +  +   R R 
Sbjct: 22  TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	99.93
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	99.93
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	99.91
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.91
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	99.84
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.68
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.68
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.65
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.65
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.65
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.61
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.6
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.59
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.59
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.59
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.55
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.53
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.52
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.51
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.5
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.5
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.49
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.48
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.48
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.45
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.45
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.45
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.43
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.42
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.42
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.42
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.41
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.41
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.4
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.38
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.38
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.38
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.38
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.37
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.37
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.35
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.35
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.34
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.34
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.33
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.33
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.32
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.29
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.28
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.28
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.28
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.27
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.26
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.26
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.24
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.23
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.23
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.22
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.22
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.2
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.18
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.17
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.14
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.13
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.11
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.08
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.04
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.03
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.02
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.02
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.98
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.98
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.97
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.94
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.86
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.77
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.76
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.75
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.73
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.49
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.49
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.33
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.33
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.27
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.26
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.18
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.13
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.06
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.04
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.02
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.0
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.93
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.93
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.82
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.72
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.67
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.66
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.61
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.57
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.51
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.46
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.39
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.34
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.29
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.25
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.23
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.2
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.95
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.91
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.72
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.62
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.32
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.15
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.11
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.0
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.97
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.92
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.88
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.87
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	95.74
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.74
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.63
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.58
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.57
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.42
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.4
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.29
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.27
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.24
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.16
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.15
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.1
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.08
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.06
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.05
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.01
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.91
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.85
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.78
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.76
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.55
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.53
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.46
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	94.46
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	94.45
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.3
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.24
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.01
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.95
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.91
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.82
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.68
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.66
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	93.65
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.65
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.63
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.58
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	93.56
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	93.54
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.47
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.29
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.28
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.26
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.24
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.23
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.23
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	93.07
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.95
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.92
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.88
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	92.65
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	92.54
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.54
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.33
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	92.2
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	92.12
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	91.5
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.42
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	91.18
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	91.05
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	90.93
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	90.3
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	90.14
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.8
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	89.75
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	89.3
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	88.96
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	88.13
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	88.03
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	87.78
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.38
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	86.03
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	85.82
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	85.79
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	85.58
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.57
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	84.16
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.05
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	84.02
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	83.71
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	83.47
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	83.36
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	82.8
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	81.3
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	81.19
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	80.3

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.8e-26  Score=197.65  Aligned_cols=153  Identities=23%  Similarity=0.391  Sum_probs=137.8

Q ss_pred             ccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccc
Q 023482          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (281)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~  200 (281)
                      |||..++.+++.+++.+.+.+++.|||||||+|.+|..|++.+.+|++||+|+.+++.++......++++++++|+.+++
T Consensus         1 QnFL~d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~   80 (252)
T d1qyra_           1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN   80 (252)
T ss_dssp             CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCC
T ss_pred             CCccCCHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhc
Confidence            68999999999999999999999999999999999999999999999999999999999887665569999999999987


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhhhhhhhcc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS  280 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s~l~~~~~  280 (281)
                      +.+..       ...+....|++|+||++.++++.+++.....+..+++|+|+|+|.|++ +.||++.|+++|+++|++|
T Consensus        81 ~~~~~-------~~~~~~~~vvgNlPY~Iss~Il~~l~~~~~~~~~~~~m~QkEvA~Ri~-A~~gsk~yg~Lsv~~q~~~  152 (252)
T d1qyra_          81 FGELA-------EKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLV-AGPNSKAYGRLSVMAQYYC  152 (252)
T ss_dssp             HHHHH-------HHHTSCEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEEHHHHHHHH-CCTTSTTCSHHHHHHHHHE
T ss_pred             ccccc-------cccCCCeEEEecchHHHHHHHHHHhcccccceehhhhhhhHHHHHHhc-cCCCChhhhHHHhhhhhcc
Confidence            64311       111445689999999999999999998888889999999999999999 9999999999999999998


Q ss_pred             C
Q 023482          281 G  281 (281)
Q Consensus       281 ~  281 (281)
                      +
T Consensus       153 ~  153 (252)
T d1qyra_         153 N  153 (252)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=196.19  Aligned_cols=146  Identities=34%  Similarity=0.502  Sum_probs=136.1

Q ss_pred             ccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcc
Q 023482          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (281)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~  197 (281)
                      |||..++.+++.+++.+.+.+++.|||||+|+|.+|..|++.+.+|++||+|+.+++.+++.+...   ++++++++|+.
T Consensus         1 QnFL~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l   80 (278)
T d1zq9a1           1 QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL   80 (278)
T ss_dssp             CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred             CCCcCCHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHh
Confidence            689999999999999999999999999999999999999999999999999999999999988754   48999999999


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhhhhhh
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVN  277 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s~l~~  277 (281)
                      +.++              ..++.||+|+||++.++++.+++.....+..+++|+|+|+|.|++ +.||++.|+++|+++|
T Consensus        81 ~~~~--------------~~~~~vV~NLPY~Iss~il~~~~~~~~~~~~~v~m~QkEvA~Rl~-A~p~~k~yg~LSv~~q  145 (278)
T d1zq9a1          81 KTDL--------------PFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLV-AKPGDKLYCRLSINTQ  145 (278)
T ss_dssp             TSCC--------------CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHH-CCTTCTTCSHHHHHHH
T ss_pred             hhhh--------------hhhhhhhcchHHHHHHHHHHHHHhhCCccceeeEeecHHHHHHHh-hhhccchhhhhhhhee
Confidence            8764              345789999999999999999998888889999999999999999 9999999999999999


Q ss_pred             hccC
Q 023482          278 FYSG  281 (281)
Q Consensus       278 ~~~~  281 (281)
                      ++|+
T Consensus       146 ~~~~  149 (278)
T d1zq9a1         146 LLAR  149 (278)
T ss_dssp             HHEE
T ss_pred             ecce
Confidence            9985

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=99.91  E-value=3.3e-26  Score=196.47  Aligned_cols=149  Identities=23%  Similarity=0.396  Sum_probs=134.7

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ  193 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~  193 (281)
                      ..+..|||||..++.+++.+++.+.+.++++|||||||+|.+|..|++.+.+|++||+|+.+++.+++++...+|+++++
T Consensus         2 ~~~~k~GQnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~   81 (245)
T d1yuba_           2 NKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIH   81 (245)
T ss_dssp             CCCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhh
Confidence            35678999999999999999999999999999999999999999999999999999999999999988887667999999


Q ss_pred             cCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhh
Q 023482          194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN  273 (281)
Q Consensus       194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s  273 (281)
                      +|+.+++++            ...++.||+|+||+++++++.+++.. ..+..+++|+|+|++.|++      +.|+++|
T Consensus        82 ~D~l~~~~~------------~~~~~~vv~NLPY~Ist~il~~~l~~-~~~~~~v~m~QkEva~r~~------~~~~~ls  142 (245)
T d1yuba_          82 QDILQFQFP------------NKQRYKIVGNIPYHLSTQIIKKVVFE-SRASDIYLIVEEGFYKRTL------DIHRTLG  142 (245)
T ss_dssp             SCCTTTTCC------------CSSEEEEEEECCSSSCHHHHHHHHHH-CCCEEEEEEEESSHHHHHH------CGGGSHH
T ss_pred             hhhhccccc------------cceeeeEeeeeehhhhHHHHHHHhhh-chhhhhhhhhhhhHHhhhh------hhhhhhh
Confidence            999998754            35678899999999999999998865 4567899999999999987      3599999


Q ss_pred             hhhhhccC
Q 023482          274 IFVNFYSG  281 (281)
Q Consensus       274 ~l~~~~~~  281 (281)
                      +++|++|+
T Consensus       143 v~~q~~~~  150 (245)
T d1yuba_         143 LLLHTQVS  150 (245)
T ss_dssp             HHTTTTBC
T ss_pred             hhhhhcce
Confidence            99999986

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.91  E-value=1.7e-24  Score=184.73  Aligned_cols=142  Identities=27%  Similarity=0.433  Sum_probs=128.2

Q ss_pred             ccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccc
Q 023482          121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (281)
Q Consensus       121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~  200 (281)
                      |||..++.+++.+++.+.+.++++|||||||+|.+|..|++.+.+|++||+|+.+++.++++....+|++++++|+.+++
T Consensus         1 QnFL~d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~   80 (235)
T d1qama_           1 QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK   80 (235)
T ss_dssp             CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC
T ss_pred             CCCcCCHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcc
Confidence            68999999999999999999999999999999999999999999999999999999999999887789999999999987


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhhhhhhhcc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS  280 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s~l~~~~~  280 (281)
                      ++.            .....||+|+||+++++++.+++.. ..+..+++|+|+|+|.|++ +.|     +.+|+++|++|
T Consensus        81 ~~~------------~~~~~vv~NLPYnIss~il~~ll~~-~~~~~~vlm~QkEvA~Ri~-a~~-----~~lsv~~~~~~  141 (235)
T d1qama_          81 FPK------------NQSYKIFGNIPYNISTDIIRKIVFD-SIADEIYLIVEYGFAKRLL-NTK-----RSLALFLMAEV  141 (235)
T ss_dssp             CCS------------SCCCEEEEECCGGGHHHHHHHHHHS-CCCSEEEEEEEHHHHHHHT-CTT-----SHHHHHHTTTE
T ss_pred             ccc------------cccceeeeeehhhhhHHHHHHHHhh-hhhhhhhhhhhHHHHHhhh-ccc-----ccceEEEeecc
Confidence            532            3456799999999999999999865 4578899999999999998 543     56999999987


Q ss_pred             C
Q 023482          281 G  281 (281)
Q Consensus       281 ~  281 (281)
                      +
T Consensus       142 ~  142 (235)
T d1qama_         142 D  142 (235)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1e-20  Score=168.48  Aligned_cols=164  Identities=18%  Similarity=0.216  Sum_probs=131.7

Q ss_pred             CCCCcccCccccCCHHHHHHHHHHhcCC------CCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhc
Q 023482          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~~------~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      ...++.+||||+.++.+++.+++.+.+.      .++.|||||+|.|.+|..|.+. + .+|+++|+|+..++..++.+.
T Consensus         9 ~k~kk~~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~   88 (322)
T d1i4wa_           9 SKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE   88 (322)
T ss_dssp             CSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT
T ss_pred             hhhhhhccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc
Confidence            4577889999999999999999998754      4568999999999999999886 3 489999999999999998775


Q ss_pred             CCCCeEEEEcCccccccccchhhHHHhh-------c---CCCCccEEEEcCCCcccHHHHHHhccCCC--------Ccce
Q 023482          185 SIDQLKVLQEDFVKCHIRSHMLSLFERR-------K---SSSGFAKVVANIPFNISTDVIKQLLPMGD--------IFSE  246 (281)
Q Consensus       185 ~~~~v~~~~gD~~~~~~~d~~~d~v~~~-------~---~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~--------~~~~  246 (281)
                      . ++++++++|+..+....   |++...       .   .....-.||+|+||++.++++.+++....        -+..
T Consensus        89 ~-~~~~ii~~D~l~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~vvaNLPy~iss~il~~~l~~~~~~~~l~~~g~~~  164 (322)
T d1i4wa_          89 G-SPLQILKRDPYDWSTYS---NLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVK  164 (322)
T ss_dssp             T-SSCEEECSCTTCHHHHH---HHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEE
T ss_pred             C-CCcEEEeCchhhcchhh---hhhhcccccccccccccccCCceEEEEeCCchhhHHHHHHHHHhccccccccccccce
Confidence            3 68999999998764211   111100       0   00112358999999999999988775211        1358


Q ss_pred             EEEeehhhHHHHhcCCCCCCCccchhhhhhhhccC
Q 023482          247 VVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG  281 (281)
Q Consensus       247 ~~~~~~~~~a~rl~~~~pg~~~y~~~s~l~~~~~~  281 (281)
                      +++|+|+|+|.|++ +.||++.|+++||++|+||+
T Consensus       165 ~vlm~QkEvA~Rl~-A~pg~k~y~~lSV~~q~~~~  198 (322)
T d1i4wa_         165 MLLWMPSTTARKLL-ARPGMHSRSKCSVVREAFTD  198 (322)
T ss_dssp             EEEEEEHHHHHHHH-CCTTSTTCCHHHHHHHHHEE
T ss_pred             EEEEEeHHHHHHHh-cCCCCccccHHHHHHHHHhc
Confidence            99999999999999 99999999999999999985

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.68  E-value=7.8e-17  Score=132.98  Aligned_cols=96  Identities=19%  Similarity=0.258  Sum_probs=76.4

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhc---CCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCe
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQL  189 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v  189 (281)
                      .++.+++| |.++++++..++..+.   --.|++|||+|||+|.+++.++..++ +|+|||+|+.+++.|++|..   ++
T Consensus        19 ~~~~~leQ-y~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~---~~   94 (197)
T d1ne2a_          19 NFKNYLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---GV   94 (197)
T ss_dssp             ---------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---TS
T ss_pred             CCCccccc-CCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc---cc
Confidence            56677888 9999999988865553   33688999999999999999888875 89999999999999999875   78


Q ss_pred             EEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       190 ~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +++++|+.+++               +.||.||+||||.
T Consensus        95 ~~~~~D~~~l~---------------~~fD~Vi~NPPfg  118 (197)
T d1ne2a_          95 NFMVADVSEIS---------------GKYDTWIMNPPFG  118 (197)
T ss_dssp             EEEECCGGGCC---------------CCEEEEEECCCC-
T ss_pred             cEEEEehhhcC---------------CcceEEEeCcccc
Confidence            99999998764               6799999999994

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.68  E-value=6.9e-17  Score=136.65  Aligned_cols=108  Identities=12%  Similarity=0.144  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~  204 (281)
                      +...+.+++.+.++++.+|||||||+|.++..+++.+.+|+|||+|+.|++.|+++....  +++.++++|+.++|+++ 
T Consensus         2 ~~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~-   80 (234)
T d1xxla_           2 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD-   80 (234)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT-
T ss_pred             chHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccc-
Confidence            456778999999999999999999999999999999999999999999999999887643  48999999999998765 


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcce
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSE  246 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~  246 (281)
                                 ++||+|+++..+++..      ..+.++++++|.+..
T Consensus        81 -----------~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~  117 (234)
T d1xxla_          81 -----------DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLL  117 (234)
T ss_dssp             -----------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----------cccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEE
Confidence                       6789999876654432      333588888887644

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=5.2e-16  Score=128.72  Aligned_cols=101  Identities=30%  Similarity=0.427  Sum_probs=85.6

Q ss_pred             CCCCcccCccccCCHHHHHHHHHHh---cCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC-
Q 023482          113 RFPRKSLGQHYMLNSEINDQLAAAA---AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-  187 (281)
Q Consensus       113 ~~~~~~~g~~~~~~~~~~~~l~~~l---~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~-  187 (281)
                      ..++.+++| |.+++.++..++...   +...|++|||+|||+|.+++.++..|+ +|+|+|+|+.+++.|++|....+ 
T Consensus        16 ~~~~~~l~q-y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~   94 (201)
T d1wy7a1          16 KNPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG   94 (201)
T ss_dssp             SSCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT
T ss_pred             CCCCccccc-CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC
Confidence            357778888 999999988776443   334678999999999999999888875 99999999999999999988665 


Q ss_pred             CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       188 ~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      +.+++.+|+.+++               ..||+||+||||..
T Consensus        95 ~~~~~~~d~~~~~---------------~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1          95 KFKVFIGDVSEFN---------------SRVDIVIMNPPFGS  121 (201)
T ss_dssp             SEEEEESCGGGCC---------------CCCSEEEECCCCSS
T ss_pred             CceEEECchhhhC---------------CcCcEEEEcCcccc
Confidence            8899999987753               67999999999954

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.65  E-value=2.2e-16  Score=132.65  Aligned_cols=106  Identities=19%  Similarity=0.232  Sum_probs=87.2

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhh
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ..++++.++++++++|||||||+|.++..+++.+++|+|+|+|+.|++.|+++....  ++++++++|+.++|+++    
T Consensus         4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~----   79 (231)
T d1vl5a_           4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD----   79 (231)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT----
T ss_pred             HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccccc----
Confidence            457888899999999999999999999999999999999999999999999887644  48999999999998654    


Q ss_pred             HHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482          208 LFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~  247 (281)
                              ++||+|+++.-+++..      ..+.+++++||.+...
T Consensus        80 --------~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          80 --------ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             --------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------cccccccccccccccCCHHHHHHHHHHhcCCCcEEEEE
Confidence                    6789999876554432      3345888888876443

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.65  E-value=3e-16  Score=128.50  Aligned_cols=109  Identities=15%  Similarity=0.189  Sum_probs=93.6

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH  200 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~  200 (281)
                      .+..++...++..+.+.++++|||+|||+|.+++.++..+.+|+|+|+++++++.|++|.+.++   +++++++|+.+..
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~   95 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL   95 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc
Confidence            5778899999999999999999999999999999999888899999999999999999987663   9999999998875


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcccHHHHH---HhccCCCCc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF  244 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~---~ll~~~~~~  244 (281)
                      .            ....||.|+.+.+......++.   +.+++++.+
T Consensus        96 ~------------~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~l  130 (186)
T d1l3ia_          96 C------------KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRI  130 (186)
T ss_dssp             T------------TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEE
T ss_pred             c------------ccCCcCEEEEeCccccchHHHHHHHHHhCcCCEE
Confidence            3            3368999999988776666554   556677765

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.2e-15  Score=126.87  Aligned_cols=145  Identities=12%  Similarity=0.151  Sum_probs=109.1

Q ss_pred             HHHhHhhhccCC-CcHHHHHHHHHhcCCC---CCcc---------cCccccCCHHHHHHHHHHh--cCCCCCEEEEEcCC
Q 023482           87 ASACIVCARSQD-DDYHATIKALNSKGRF---PRKS---------LGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPG  151 (281)
Q Consensus        87 r~~mv~~~~r~~-~~~~~~~~~~~~~~~~---~~~~---------~g~~~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG  151 (281)
                      ++.|++.+.+.. .....+.+.+.+....   +...         .++ ++..|.+...|++.+  .++++++|||||||
T Consensus         8 ~~~mv~~l~~~g~i~~~~v~~a~~~vpRe~Fvp~~aY~D~~l~i~~~~-~is~P~~~a~~le~L~~~l~~g~~VLdiG~G   86 (224)
T d1i1na_           8 HSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQA-TISAPHMHAYALELLFDQLHEGAKALDVGSG   86 (224)
T ss_dssp             HHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSCTTSSSCEEEETTE-EECCHHHHHHHHHHTTTTSCTTCEEEEETCT
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCcccCCCCCccccchh-hhhhhHHHHHHHHHHhhccCCCCeEEEecCC
Confidence            678999887755 4566777776654221   1111         133 788899999999998  67899999999999


Q ss_pred             ccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC-------CCeEEEEcCccccccccchhhHHHhhcCCCCccEE
Q 023482          152 TGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (281)
Q Consensus       152 ~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~-------~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~V  221 (281)
                      +|+.+..|++.   ..+|+++|+++++++.|++++++.       ++++++.+|+.+....            ...||+|
T Consensus        87 sGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~------------~~~fD~I  154 (224)
T d1i1na_          87 SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE------------EAPYDAI  154 (224)
T ss_dssp             TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG------------GCCEEEE
T ss_pred             CCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch------------hhhhhhh
Confidence            99999999986   459999999999999999887632       4899999999887643            3679999


Q ss_pred             EEcCCCcccHHHHHHhccCCCCc
Q 023482          222 VANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       222 i~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      +.+.......+.+.+.|++||.+
T Consensus       155 ~~~~~~~~ip~~l~~~LkpGG~L  177 (224)
T d1i1na_         155 HVGAAAPVVPQALIDQLKPGGRL  177 (224)
T ss_dssp             EECSBBSSCCHHHHHTEEEEEEE
T ss_pred             hhhcchhhcCHHHHhhcCCCcEE
Confidence            98754444444455566777765

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.60  E-value=2.7e-15  Score=126.14  Aligned_cols=110  Identities=17%  Similarity=0.190  Sum_probs=91.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR  202 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~  202 (281)
                      .++.+.....|++.+.++++++|||||||+|++|..|++.+.+|+++|+++.+++.|+++.....|++++++|...... 
T Consensus        52 ~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~-  130 (224)
T d1vbfa_          52 NTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-  130 (224)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-
T ss_pred             ceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcch-
Confidence            6778899999999999999999999999999999999999999999999999999999998877899999999877542 


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                                 ..++||+|+.+-.....++.+...|++||.+
T Consensus       131 -----------~~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrL  161 (224)
T d1vbfa_         131 -----------EEKPYDRVVVWATAPTLLCKPYEQLKEGGIM  161 (224)
T ss_dssp             -----------GGCCEEEEEESSBBSSCCHHHHHTEEEEEEE
T ss_pred             -----------hhhhHHHHHhhcchhhhhHHHHHhcCCCCEE
Confidence                       2367999998644433334444555666654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.59  E-value=4.4e-15  Score=122.14  Aligned_cols=103  Identities=17%  Similarity=0.334  Sum_probs=85.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcCccccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~----~~v~~~~gD~~~~~~~d~  204 (281)
                      ..+.+++.+.+.++++|||+|||+|.++..++..+.+|+++|+|+.+++.|++++..+    .+++++.+|+.+ ++   
T Consensus        40 ~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~---  115 (194)
T d1dusa_          40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NV---  115 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TC---
T ss_pred             HHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hh---
Confidence            3566788888889999999999999999999998889999999999999999987644    269999999876 32   


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCcccHHHHH-------HhccCCCCc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNISTDVIK-------QLLPMGDIF  244 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~-------~ll~~~~~~  244 (281)
                               ....||+|++|+||+...+.+.       ++++++|.+
T Consensus       116 ---------~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l  153 (194)
T d1dusa_         116 ---------KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEI  153 (194)
T ss_dssp             ---------TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ---------ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEE
Confidence                     2378999999999987665433       556666654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=3.3e-15  Score=124.92  Aligned_cols=110  Identities=15%  Similarity=0.167  Sum_probs=91.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~  197 (281)
                      .++.|.+...+++.+.++++++|||||||+|+++..+++.   ..+|+++|+++++++.|+++++..  .|+.++++|+.
T Consensus        57 ~i~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~  136 (213)
T d1dl5a1          57 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGY  136 (213)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             eeccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchH
Confidence            5677999999999999999999999999999999999986   459999999999999999998765  49999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      +..+.            .+.||+|+.+......++.+.+.+++||.+
T Consensus       137 ~~~~~------------~~~fD~I~~~~~~~~~p~~l~~~LkpGG~l  171 (213)
T d1dl5a1         137 YGVPE------------FSPYDVIFVTVGVDEVPETWFTQLKEGGRV  171 (213)
T ss_dssp             GCCGG------------GCCEEEEEECSBBSCCCHHHHHHEEEEEEE
T ss_pred             Hcccc------------ccchhhhhhhccHHHhHHHHHHhcCCCcEE
Confidence            86543            267999999765544445555667777765

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.59  E-value=7.7e-15  Score=122.61  Aligned_cols=146  Identities=16%  Similarity=0.237  Sum_probs=109.5

Q ss_pred             HHHHHhHhhhccCC-CcHHHHHHHHHhcCCC---CCc-------------ccCccccCCHHHHHHHHHHhcCCCCCEEEE
Q 023482           85 GAASACIVCARSQD-DDYHATIKALNSKGRF---PRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLE  147 (281)
Q Consensus        85 ~~r~~mv~~~~r~~-~~~~~~~~~~~~~~~~---~~~-------------~~g~~~~~~~~~~~~l~~~l~~~~~~~VLD  147 (281)
                      +.+..|++...+.. .....+.+.+.+...+   +..             ..|+ ++..|.+...|++.+.++++++|||
T Consensus         6 e~~~~lv~~L~~~g~i~~~~v~~A~~~VpRe~Fvp~~~~~~AY~D~~l~i~~g~-~is~P~~~a~ml~~L~l~~g~~VLe   84 (215)
T d1jg1a_           6 EKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQ-TVSAPHMVAIMLEIANLKPGMNILE   84 (215)
T ss_dssp             HHHHHHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTC-EECCHHHHHHHHHHHTCCTTCCEEE
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHcCCchhcCCHHHhhcccccCCcccchhh-hhhhhhhHHHHHHhhccCccceEEE
Confidence            34566777766654 4566666666654211   111             1133 7888999999999999999999999


Q ss_pred             EcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEc
Q 023482          148 IGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN  224 (281)
Q Consensus       148 iGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n  224 (281)
                      ||||+|+.+..|++. +.+|+++|+++.+++.|++++.+.+  |+.++++|..+...            ..+.||.|+.+
T Consensus        85 IGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~------------~~~pfD~Iiv~  152 (215)
T d1jg1a_          85 VGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP------------PKAPYDVIIVT  152 (215)
T ss_dssp             ECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG------------GGCCEEEEEEC
T ss_pred             ecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc------------ccCcceeEEee
Confidence            999999999999987 7789999999999999999998664  99999999987542            33789999986


Q ss_pred             CCC-cccHHHHHHhccCCCCc
Q 023482          225 IPF-NISTDVIKQLLPMGDIF  244 (281)
Q Consensus       225 ~P~-~~~~~~~~~ll~~~~~~  244 (281)
                      -.. .....++.+| ++||.+
T Consensus       153 ~a~~~ip~~l~~qL-~~gGrL  172 (215)
T d1jg1a_         153 AGAPKIPEPLIEQL-KIGGKL  172 (215)
T ss_dssp             SBBSSCCHHHHHTE-EEEEEE
T ss_pred             cccccCCHHHHHhc-CCCCEE
Confidence            443 4445555554 555544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=8.3e-15  Score=124.52  Aligned_cols=110  Identities=15%  Similarity=0.225  Sum_probs=88.0

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~  199 (281)
                      ...++.+..+.+.+.+.++++|||||||+|.++..+++. +++|+|||+|+.|++.|+++....+   +++++++|+.++
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            346678888999999999999999999999999999886 7899999999999999999876553   799999999987


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCccc---H---HHHHHhccCCCCcce
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS---T---DVIKQLLPMGDIFSE  246 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~---~---~~~~~ll~~~~~~~~  246 (281)
                      . .            .++||.|++..-+++.   .   ..+.+++++||.+..
T Consensus        96 ~-~------------~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i  135 (245)
T d1nkva_          96 V-A------------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLI  135 (245)
T ss_dssp             C-C------------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEE
T ss_pred             c-c------------cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEE
Confidence            3 2            2679999986443322   2   334577788877643

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.53  E-value=2e-14  Score=124.73  Aligned_cols=108  Identities=15%  Similarity=0.193  Sum_probs=84.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~  204 (281)
                      +++.+.....+.++.+|||||||+|.++..|++. +++|+|||+++.+++.|+++....   ++++++++|+.++|+++ 
T Consensus        55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~-  133 (282)
T d2o57a1          55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED-  133 (282)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT-
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccc-
Confidence            3444555557788999999999999999999987 889999999999999999887643   48999999999998654 


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceEE
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~~  248 (281)
                                 ++||+|++.-.++...      ..+.++|++||.+....
T Consensus       134 -----------~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         134 -----------NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             -----------TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----------cccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence                       6789999865443221      33458888888764433

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=1.1e-14  Score=124.66  Aligned_cols=120  Identities=19%  Similarity=0.210  Sum_probs=86.8

Q ss_pred             CCCCCcccCc-cccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-Ce
Q 023482          112 GRFPRKSLGQ-HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QL  189 (281)
Q Consensus       112 ~~~~~~~~g~-~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v  189 (281)
                      .+++...||. +..+.+..++.+.+..  .++++|||+|||+|.+++.+++.+++|+|+|+|+.+++.|++|.+.++ ++
T Consensus        92 ~i~pg~aFGTG~H~TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~  169 (254)
T d2nxca1          92 VIEPGMAFGTGHHETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRP  169 (254)
T ss_dssp             ECCCC-----CCSHHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCC
T ss_pred             EEccccccCccccchhhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCce
Confidence            4566667764 2333344455554443  478999999999999999999989999999999999999999988766 78


Q ss_pred             EEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccH---HHHHHhccCCCCcce
Q 023482          190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGDIFSE  246 (281)
Q Consensus       190 ~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~---~~~~~ll~~~~~~~~  246 (281)
                      +++++|+.+.             ...++||+|++|..++...   +.+.+.+++||.+-.
T Consensus       170 ~~~~~d~~~~-------------~~~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lil  216 (254)
T d2nxca1         170 RFLEGSLEAA-------------LPFGPFDLLVANLYAELHAALAPRYREALVPGGRALL  216 (254)
T ss_dssp             EEEESCHHHH-------------GGGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEecccccc-------------ccccccchhhhccccccHHHHHHHHHHhcCCCcEEEE
Confidence            8999997653             2236899999997665444   344577788887643

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=3e-14  Score=118.51  Aligned_cols=93  Identities=18%  Similarity=0.266  Sum_probs=75.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      .++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.|+++....+ ++.++++|+.++++.+            ++|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~------------~~f  103 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFED------------KTF  103 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCT------------TCE
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccC------------cCc
Confidence            466799999999999999999999999999999999999998876443 7899999999998654            678


Q ss_pred             cEEEEcCCCccc-H-H------HHHHhccCCCCc
Q 023482          219 AKVVANIPFNIS-T-D------VIKQLLPMGDIF  244 (281)
Q Consensus       219 d~Vi~n~P~~~~-~-~------~~~~ll~~~~~~  244 (281)
                      |+|+++--+++. . +      .+.+++++||.+
T Consensus       104 D~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~l  137 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKF  137 (226)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             eEEEEecchhhCChhHHHHHHHHHHHHcCcCcEE
Confidence            999987555442 1 1      234777888876

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.50  E-value=5.7e-14  Score=119.06  Aligned_cols=103  Identities=20%  Similarity=0.316  Sum_probs=81.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhh
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ....++......++++|||||||+|.++..+++.+.+|+|||+|+.|++.|+++....+ +++++++|+.+++++     
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-----  103 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-----  103 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-----
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccc-----
Confidence            45556666677778899999999999999999999999999999999999999987654 899999999998753     


Q ss_pred             HHHhhcCCCCccEEEEc-CCCcc-cH-------HHHHHhccCCCCc
Q 023482          208 LFERRKSSSGFAKVVAN-IPFNI-ST-------DVIKQLLPMGDIF  244 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n-~P~~~-~~-------~~~~~ll~~~~~~  244 (281)
                              +.||.|++. .-++. ..       ..+.+++++||.+
T Consensus       104 --------~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~l  141 (251)
T d1wzna1         104 --------NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVF  141 (251)
T ss_dssp             --------SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             --------cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEE
Confidence                    579998874 22222 11       2234777777765

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=7.7e-14  Score=117.16  Aligned_cols=146  Identities=16%  Similarity=0.239  Sum_probs=105.1

Q ss_pred             HHHhHhhhccCCC-cHHHHHHHHHhcCCC---CCccc-------C-ccccCCHHHHHHHHHHh--cCCCCCEEEEEcCCc
Q 023482           87 ASACIVCARSQDD-DYHATIKALNSKGRF---PRKSL-------G-QHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGT  152 (281)
Q Consensus        87 r~~mv~~~~r~~~-~~~~~~~~~~~~~~~---~~~~~-------g-~~~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~  152 (281)
                      ++.|++...+... +...+.+.+.+...+   ++..+       + ..++..|.+..++++.+  .++++++|||||||+
T Consensus        12 ~~~lv~~l~~~gvi~~~~v~~a~~~vpRe~Fvp~~aY~D~~lpi~~~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGs   91 (223)
T d1r18a_          12 NEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGS   91 (223)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSCTTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTT
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCccccCCCCccccCCceeehhhhHHHHHHHHhhccCCCCeEEEecCCC
Confidence            4568886554443 566677777654321   11111       1 23778899999999998  688999999999999


Q ss_pred             cHHHHHHHHc----C----CEEEEEeCCHHHHHHHHHHhcC-------CCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          153 GSLTNVLLNA----G----ATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       153 G~~t~~la~~----~----~~v~gvD~s~~~l~~a~~~~~~-------~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      |++|..|++.    |    .+|+++|+++++++.|++++..       ..|+.++++|..+...            ..+.
T Consensus        92 GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~------------~~~~  159 (223)
T d1r18a_          92 GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP------------PNAP  159 (223)
T ss_dssp             SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG------------GGCS
T ss_pred             CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc------------cccc
Confidence            9999999875    2    3899999999999999887643       2499999999987653            2368


Q ss_pred             ccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          218 FAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       218 ~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ||+|+.+-.....+..+.+.+++||.+
T Consensus       160 fD~Iiv~~a~~~~p~~l~~~Lk~gG~l  186 (223)
T d1r18a_         160 YNAIHVGAAAPDTPTELINQLASGGRL  186 (223)
T ss_dssp             EEEEEECSCBSSCCHHHHHTEEEEEEE
T ss_pred             eeeEEEEeechhchHHHHHhcCCCcEE
Confidence            999998754444444455555666654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.49  E-value=6.3e-14  Score=120.36  Aligned_cols=110  Identities=21%  Similarity=0.355  Sum_probs=93.0

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQE  194 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~-----~~v~~~~g  194 (281)
                      -+.-+.-+..++..+.+.+|.+|||+|||+|.+|..||..   .++|+++|+++++++.|+++++..     .|++++++
T Consensus        78 qiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~  157 (264)
T d1i9ga_          78 QVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS  157 (264)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred             cccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec
Confidence            3556778899999999999999999999999999999987   469999999999999999987642     49999999


Q ss_pred             CccccccccchhhHHHhhcCCCCccEEEEcCCCccc-HHHHHHhccCCCCc
Q 023482          195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-TDVIKQLLPMGDIF  244 (281)
Q Consensus       195 D~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~-~~~~~~ll~~~~~~  244 (281)
                      |+.+.++++            ..||.||.++|-.|. -+.+.+++++++.+
T Consensus       158 d~~~~~~~~------------~~fDaV~ldlp~P~~~l~~~~~~LkpGG~l  196 (264)
T d1i9ga_         158 DLADSELPD------------GSVDRAVLDMLAPWEVLDAVSRLLVAGGVL  196 (264)
T ss_dssp             CGGGCCCCT------------TCEEEEEEESSCGGGGHHHHHHHEEEEEEE
T ss_pred             ccccccccC------------CCcceEEEecCCHHHHHHHHHhccCCCCEE
Confidence            999877543            679999999876443 35567888888876

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.48  E-value=1.5e-13  Score=112.85  Aligned_cols=101  Identities=20%  Similarity=0.191  Sum_probs=78.1

Q ss_pred             HHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhh
Q 023482          135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      ..+....+.+|||||||+|..+..+++++.+|+|+|+|+.+++.|+++....  +++++..+|+.+.++           
T Consensus        24 ~~~~~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------   92 (198)
T d2i6ga1          24 AAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-----------   92 (198)
T ss_dssp             HHHTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-----------
T ss_pred             HHcccCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-----------
Confidence            3344445569999999999999999999999999999999999999887654  489999999998764           


Q ss_pred             cCCCCccEEEEcCCCccc-----HHHH---HHhccCCCCcceEE
Q 023482          213 KSSSGFAKVVANIPFNIS-----TDVI---KQLLPMGDIFSEVV  248 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~-----~~~~---~~ll~~~~~~~~~~  248 (281)
                        .+.||+|+++..++..     ..++   .++++++|.+....
T Consensus        93 --~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1          93 --DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             --CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence              2679999997666542     2333   35677777664433

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.48  E-value=3.9e-14  Score=115.13  Aligned_cols=107  Identities=16%  Similarity=0.095  Sum_probs=81.5

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--------------CCeEE
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--------------DQLKV  191 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--------------~~v~~  191 (281)
                      ++.+.. .+..+.+.++.+|||+|||+|..+..||++|.+|+|+|+|+.|++.|+++.+..              .++++
T Consensus         6 ~~~~~~-~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T d1pjza_           6 NKDLQQ-YWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEI   84 (201)
T ss_dssp             THHHHH-HHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred             HHHHHH-HHHHcCCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccce
Confidence            344444 456678889999999999999999999999999999999999999999987542              25678


Q ss_pred             EEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccH--------HHHHHhccCCCCc
Q 023482          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIF  244 (281)
Q Consensus       192 ~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~  244 (281)
                      +.+|+.+++..+           ...||.|++..-+....        ..+.++++++|.+
T Consensus        85 ~~~d~~~l~~~~-----------~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l  134 (201)
T d1pjza_          85 WCGDFFALTARD-----------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSG  134 (201)
T ss_dssp             EEECCSSSTHHH-----------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEE
T ss_pred             eccccccccccc-----------ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEE
Confidence            889988876432           25789998865543322        2334678888765

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.45  E-value=1.8e-13  Score=108.14  Aligned_cols=98  Identities=15%  Similarity=0.267  Sum_probs=76.8

Q ss_pred             HHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccch
Q 023482          131 DQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       131 ~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~  205 (281)
                      +.+...++. -.+.+|||+|||+|.+++.++.+|+ +|++||.++.+++.+++++...+   +++++++|+.+...    
T Consensus         3 e~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~----   78 (152)
T d2esra1           3 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID----   78 (152)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH----
T ss_pred             HHHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccc----
Confidence            344455543 2688999999999999999988875 99999999999999999998764   79999999877421    


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCccc--HHHHHHhcc
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLP  239 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~~--~~~~~~ll~  239 (281)
                             ....+||+|+.+|||...  .+.+..+..
T Consensus        79 -------~~~~~fDiIf~DPPy~~~~~~~~l~~i~~  107 (152)
T d2esra1          79 -------CLTGRFDLVFLDPPYAKETIVATIEALAA  107 (152)
T ss_dssp             -------HBCSCEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred             -------ccccccceeEechhhccchHHHHHHHHHH
Confidence                   334789999999999644  345555443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4e-13  Score=112.91  Aligned_cols=115  Identities=11%  Similarity=0.003  Sum_probs=89.1

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-----------------
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------------  186 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-----------------  186 (281)
                      ..++.+.+.+.+.+.+.++.+|||+|||+|..+..||+.|.+|+|||+|+.+++.|+++....                 
T Consensus        28 ~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d2bzga1          28 QGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS  107 (229)
T ss_dssp             TCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence            356777788888888888899999999999999999999999999999999999999875421                 


Q ss_pred             --CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc-----H---HHHHHhccCCCCcceEEE
Q 023482          187 --DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-----T---DVIKQLLPMGDIFSEVVL  249 (281)
Q Consensus       187 --~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~-----~---~~~~~ll~~~~~~~~~~~  249 (281)
                        .+++++++|+.+++.           ...+.||+|+..--++..     .   ..+.++++++|.+-...+
T Consensus       108 ~~~~v~~~~~d~~~l~~-----------~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1         108 SSGNISLYCCSIFDLPR-----------TNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             TTSSEEEEESCGGGGGG-----------SCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCCcEEEEEcchhhccc-----------cccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence              378999999988764           234689999875433221     2   344688888887544433

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.45  E-value=1e-13  Score=118.16  Aligned_cols=105  Identities=18%  Similarity=0.332  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH  200 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~  200 (281)
                      +.-+..++..+++.+|.+|||+|||+|.++..|++.   .++|+++|+++++++.|++++++.   +|+++.++|+.+..
T Consensus        71 pkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~  150 (250)
T d1yb2a1          71 EIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI  150 (250)
T ss_dssp             ----------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC
T ss_pred             HHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc
Confidence            344567888999999999999999999999999986   469999999999999999998765   49999999998752


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcc-cHHHHHHhccCCCCc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLPMGDIF  244 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-~~~~~~~ll~~~~~~  244 (281)
                                   ....||.|+.++|-.+ .-+.+.+++++||.+
T Consensus       151 -------------~~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~l  182 (250)
T d1yb2a1         151 -------------SDQMYDAVIADIPDPWNHVQKIASMMKPGSVA  182 (250)
T ss_dssp             -------------CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEE
T ss_pred             -------------ccceeeeeeecCCchHHHHHHHHHhcCCCceE
Confidence                         2367999999987543 235567888888876

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.43  E-value=1.4e-13  Score=119.50  Aligned_cols=106  Identities=16%  Similarity=0.241  Sum_probs=83.7

Q ss_pred             CHHHHHHHHHHh-cCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccc
Q 023482          126 NSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCH  200 (281)
Q Consensus       126 ~~~~~~~l~~~l-~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~  200 (281)
                      +.++.+.+++.+ .+.++.+|||||||+|.++..+++.   +.+|+|+|+|+.+++.|+++....+ +++++++|+.+++
T Consensus        11 n~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~   90 (281)
T d2gh1a1          11 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE   90 (281)
T ss_dssp             CHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC
T ss_pred             hHHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc
Confidence            455667776655 4567789999999999999999885   5799999999999999999988765 8999999999887


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIF  244 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~  244 (281)
                      +.             ++||+|+++.-+++..      ..+.+.+++||.+
T Consensus        91 ~~-------------~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l  127 (281)
T d2gh1a1          91 LN-------------DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKI  127 (281)
T ss_dssp             CS-------------SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEE
T ss_pred             cc-------------CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEE
Confidence            53             5699999986654432      2234677777765

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=4.1e-13  Score=115.87  Aligned_cols=87  Identities=22%  Similarity=0.420  Sum_probs=70.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~  204 (281)
                      +++..+.... ..+.+|||+|||+|.+++.++..  ..+|+|+|+|+.+++.|++|...++  +++++++|+.+.     
T Consensus        97 lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~-----  170 (274)
T d2b3ta1          97 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-----  170 (274)
T ss_dssp             HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-----
T ss_pred             hhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc-----
Confidence            3444555443 34568999999999999999886  5699999999999999999987654  799999998763     


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                              ....+||+|++||||-.
T Consensus       171 --------~~~~~fDlIvsNPPYi~  187 (274)
T d2b3ta1         171 --------LAGQQFAMIVSNPPYID  187 (274)
T ss_dssp             --------GTTCCEEEEEECCCCBC
T ss_pred             --------cCCCceeEEEecchhhh
Confidence                    22368999999999954

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=8.8e-13  Score=114.53  Aligned_cols=107  Identities=16%  Similarity=0.217  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS  203 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d  203 (281)
                      ...+.+++.+++++|.+|||||||.|..+..+++. |++|+||++|+..++.|+++..+.   +++++..+|+.+++   
T Consensus        49 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---  125 (285)
T d1kpga_          49 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---  125 (285)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---
Confidence            45678888999999999999999999999998887 899999999999999999987655   38999999987764   


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCc--------ccHHHHHHhccCCCCcceEEE
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFN--------ISTDVIKQLLPMGDIFSEVVL  249 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~--------~~~~~~~~ll~~~~~~~~~~~  249 (281)
                                  +.||.|++---+.        ..-..+.++|+++|.+.....
T Consensus       126 ------------~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         126 ------------EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             ------------CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ------------ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence                        6789999843221        122344589999998754443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=8.2e-13  Score=114.54  Aligned_cols=106  Identities=16%  Similarity=0.201  Sum_probs=84.5

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS  203 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d  203 (281)
                      ...+.+++.+.+++|++|||||||+|.++..+++. +++|+|||+|+++++.|+++..+.+   ++.+...|..+++   
T Consensus        39 ~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~---  115 (280)
T d2fk8a1          39 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---  115 (280)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc---
Confidence            34677888899999999999999999999999877 8999999999999999999987654   7888888877653   


Q ss_pred             chhhHHHhhcCCCCccEEEEcCCCcc-----cH---HHHHHhccCCCCcceEE
Q 023482          204 HMLSLFERRKSSSGFAKVVANIPFNI-----ST---DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~-----~~---~~~~~ll~~~~~~~~~~  248 (281)
                                  +.||.|++.--+..     ..   ..+.++|+++|.+..-.
T Consensus       116 ------------~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         116 ------------EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             ------------CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ------------cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence                        67999998533321     12   33468899999875433

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=7.6e-13  Score=113.97  Aligned_cols=94  Identities=13%  Similarity=0.218  Sum_probs=76.9

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ..++.+|||||||+|.++..+++.  +.+++|+|+|+.|++.|+++..   +++++++|+.++|+.+            +
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~---~~~~~~~d~~~l~~~~------------~  146 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP---QVTFCVASSHRLPFSD------------T  146 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT---TSEEEECCTTSCSBCT------------T
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc---cccceeeehhhccCCC------------C
Confidence            446779999999999999999987  5699999999999999988754   8999999999999765            6


Q ss_pred             CccEEEEcCCCcccHHHHHHhccCCCCcceEE
Q 023482          217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~  248 (281)
                      .||+|++....... ..+.+++++||.+....
T Consensus       147 sfD~v~~~~~~~~~-~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         147 SMDAIIRIYAPCKA-EELARVVKPGGWVITAT  177 (268)
T ss_dssp             CEEEEEEESCCCCH-HHHHHHEEEEEEEEEEE
T ss_pred             CEEEEeecCCHHHH-HHHHHHhCCCcEEEEEe
Confidence            78888886544433 45688899988775443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.41  E-value=3.6e-13  Score=114.11  Aligned_cols=70  Identities=23%  Similarity=0.287  Sum_probs=62.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      ++++|||||||+|.++..+++.+.+|+|||+|+.|++.|+++....+ +++++++|+.++++             .+.||
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-------------~~~fD  103 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-------------NRKFD  103 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-------------SCCEE
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcc-------------ccccc
Confidence            45799999999999999999999999999999999999999876554 89999999998764             25799


Q ss_pred             EEEE
Q 023482          220 KVVA  223 (281)
Q Consensus       220 ~Vi~  223 (281)
                      +|++
T Consensus       104 ~i~~  107 (246)
T d1y8ca_         104 LITC  107 (246)
T ss_dssp             EEEE
T ss_pred             ccce
Confidence            9987

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.40  E-value=3.5e-13  Score=108.54  Aligned_cols=106  Identities=15%  Similarity=0.174  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHhc--CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCcccccc
Q 023482          125 LNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHI  201 (281)
Q Consensus       125 ~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~  201 (281)
                      +...+.+.+...+.  ...+.+|||+|||+|.+++.++..|++++++|.|+.+++.+++|+..++ +.+++..|+.....
T Consensus        23 t~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~  102 (171)
T d1ws6a1          23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLP  102 (171)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHH
T ss_pred             CcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccc
Confidence            44445555555543  3467899999999999999999999999999999999999999987654 44566555543210


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcCCCcccH-HHHHHhc
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLL  238 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-~~~~~ll  238 (281)
                      .      .  .....+||+||.||||.... ..+..++
T Consensus       103 ~------~--~~~~~~fD~If~DPPY~~~~~~~l~~l~  132 (171)
T d1ws6a1         103 E------A--KAQGERFTVAFMAPPYAMDLAALFGELL  132 (171)
T ss_dssp             H------H--HHTTCCEEEEEECCCTTSCTTHHHHHHH
T ss_pred             c------c--cccCCccceeEEccccccCHHHHHHHHH
Confidence            0      0  03446899999999997543 3444444

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=5e-13  Score=112.35  Aligned_cols=90  Identities=21%  Similarity=0.304  Sum_probs=70.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++...    .++.+|+.++++++            +.||+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~----~~~~~~~~~l~~~~------------~~fD~  105 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK----NVVEAKAEDLPFPS------------GAFEA  105 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS----CEEECCTTSCCSCT------------TCEEE
T ss_pred             CCCEEEEECCCCchhcccccccceEEEEeeccccccccccccccc----cccccccccccccc------------ccccc
Confidence            567999999999999999999999999999999999999987542    37889999998654            67898


Q ss_pred             EEEc-CCCcc---cH---HHHHHhccCCCCcce
Q 023482          221 VVAN-IPFNI---ST---DVIKQLLPMGDIFSE  246 (281)
Q Consensus       221 Vi~n-~P~~~---~~---~~~~~ll~~~~~~~~  246 (281)
                      |++. .-+++   ..   ..+.+++++||.+..
T Consensus       106 ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii  138 (246)
T d2avna1         106 VLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA  138 (246)
T ss_dssp             EEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             eeeecchhhhhhhHHHHHHHHHhhcCcCcEEEE
Confidence            8874 22222   11   234578888887643

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.38  E-value=6.7e-13  Score=113.49  Aligned_cols=104  Identities=18%  Similarity=0.187  Sum_probs=82.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      ....+++.+....+.+|||+|||+|.++..++.. ..+|++||+++.|++.|+++....++++++++|+.+++++     
T Consensus        81 ~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~-----  155 (254)
T d1xtpa_          81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLP-----  155 (254)
T ss_dssp             HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCC-----
T ss_pred             HHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccC-----
Confidence            4566777777777889999999999999988866 5689999999999999999987767899999999998754     


Q ss_pred             HHHhhcCCCCccEEEEcCCCcccH-H----H---HHHhccCCCCc
Q 023482          208 LFERRKSSSGFAKVVANIPFNIST-D----V---IKQLLPMGDIF  244 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~~-~----~---~~~ll~~~~~~  244 (281)
                             .+.||+|++...+++.+ +    +   +.++++++|.+
T Consensus       156 -------~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~i  193 (254)
T d1xtpa_         156 -------PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYI  193 (254)
T ss_dssp             -------SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             -------CCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEE
Confidence                   36899999987665442 2    1   23666666655

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.7e-13  Score=113.35  Aligned_cols=96  Identities=11%  Similarity=0.078  Sum_probs=73.8

Q ss_pred             cCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcC
Q 023482          138 AVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       138 ~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      ...++.+|||||||+|..+..++.. ..+|+|||+|+.|++.|++++...+  +++++++|+.+++++            
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~------------  124 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE------------  124 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCC------------
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccc------------
Confidence            3456679999999999999988765 5589999999999999999887543  789999999998754            


Q ss_pred             CCCccEEEEcCCCccc-HH----H---HHHhccCCCCcc
Q 023482          215 SSGFAKVVANIPFNIS-TD----V---IKQLLPMGDIFS  245 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~~-~~----~---~~~ll~~~~~~~  245 (281)
                      .+.||+|++.--++.. .+    +   +.++++++|.+.
T Consensus       125 ~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~  163 (222)
T d2ex4a1         125 PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIV  163 (222)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccccccccccccchhhhhhhHHHHHHHhcCCcceEE
Confidence            3789999986554332 22    2   346777776553

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-12  Score=115.35  Aligned_cols=111  Identities=19%  Similarity=0.280  Sum_probs=87.2

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcC-------------CC
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-------------ID  187 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~-------------~~  187 (281)
                      +.-+.-+..++..+++.+|.+|||+|||+|+++..||..   .++|+++|+++++++.|+++++.             .+
T Consensus        81 iiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~  160 (324)
T d2b25a1          81 ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD  160 (324)
T ss_dssp             CCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred             ccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence            455677889999999999999999999999999999986   46999999999999999998763             14


Q ss_pred             CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc-cHHHHHHhccCCCCc
Q 023482          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLPMGDIF  244 (281)
Q Consensus       188 ~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-~~~~~~~ll~~~~~~  244 (281)
                      |+++.++|+.+....          .....||.||.++|-.| .-+.+.++|++||.+
T Consensus       161 nv~~~~~di~~~~~~----------~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~l  208 (324)
T d2b25a1         161 NVDFIHKDISGATED----------IKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVC  208 (324)
T ss_dssp             CEEEEESCTTCCC-----------------EEEEEECSSSTTTTHHHHGGGEEEEEEE
T ss_pred             ceeEEecchhhcccc----------cCCCCcceEeecCcCHHHHHHHHHHhccCCCEE
Confidence            899999999876432          23367999999877533 335567888888865

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.37  E-value=1e-12  Score=109.12  Aligned_cols=100  Identities=14%  Similarity=0.097  Sum_probs=79.9

Q ss_pred             hcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       137 l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      +.++++++|||+|||+|+.+..+++.  ..+|+|||+++.|++.|+++.+..+|+.++.+|+.+.+..+.         .
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~---------~  122 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSG---------I  122 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTT---------T
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCcccccc---------c
Confidence            56779999999999999999999986  359999999999999999998877899999999988665432         2


Q ss_pred             CCCccEEEEcCCCcccHHH----HHHhccCCCCcc
Q 023482          215 SSGFAKVVANIPFNISTDV----IKQLLPMGDIFS  245 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~~~~~----~~~ll~~~~~~~  245 (281)
                      ...+|+|+.+.+.......    +.++++++|.+.
T Consensus       123 ~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~  157 (209)
T d1nt2a_         123 VEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVV  157 (209)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred             cceEEEEEecccChhhHHHHHHHHHHHhccCCeEE
Confidence            2457888888766554432    347888888764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=4.5e-12  Score=110.31  Aligned_cols=108  Identities=14%  Similarity=0.155  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIR  202 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~  202 (281)
                      ....+.+++.+++++|.+|||||||+|.++..+++. +++|+||++|++.++.++++....+   .+++...|....   
T Consensus        47 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~---  123 (291)
T d1kpia_          47 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---  123 (291)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc---
Confidence            345788899999999999999999999999999876 8999999999999999998877543   788888886432   


Q ss_pred             cchhhHHHhhcCCCCccEEEEcCCCcc---------------cHHHHHHhccCCCCcceEEE
Q 023482          203 SHMLSLFERRKSSSGFAKVVANIPFNI---------------STDVIKQLLPMGDIFSEVVL  249 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~---------------~~~~~~~ll~~~~~~~~~~~  249 (281)
                                  .++||.|++.--+..               .-..+.++|++||.+-.-..
T Consensus       124 ------------~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i  173 (291)
T d1kpia_         124 ------------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  173 (291)
T ss_dssp             ------------CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred             ------------ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence                        267999998543322               12345689999998754443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.35  E-value=2e-12  Score=108.10  Aligned_cols=94  Identities=18%  Similarity=0.249  Sum_probs=72.5

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      +++.+|||+|||+|..+..|++.    +.+|+|+|+|+.|++.|+++....+   ++++..+|+.++++           
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-----------  106 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----------  106 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-----------
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-----------
Confidence            46789999999999999999874    6799999999999999999876543   78889999987764           


Q ss_pred             cCCCCccEEEEcCCCccc-----H---HHHHHhccCCCCcceE
Q 023482          213 KSSSGFAKVVANIPFNIS-----T---DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~-----~---~~~~~ll~~~~~~~~~  247 (281)
                         ..+|+|+++.-+++.     .   ..+.+.|++||.+-..
T Consensus       107 ---~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         107 ---KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             ---CSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---ccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecc
Confidence               457888886544332     1   2234777888876443

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=2e-12  Score=105.10  Aligned_cols=117  Identities=16%  Similarity=0.205  Sum_probs=84.2

Q ss_pred             CCHHHHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccc
Q 023482          125 LNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH  200 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~  200 (281)
                      +...+.+.+...+.. -.+.+|||++||+|.+++.++.+|+ +|+.||.|+.+++.+++|+...  .+++++.+|+.+..
T Consensus        26 t~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l  105 (183)
T d2fpoa1          26 TTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL  105 (183)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred             CcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccc
Confidence            344455555555532 2677999999999999999999977 8999999999999999998754  48999999987642


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCccc--HHHHHHhccCCCCcc-eEEEeehh
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLPMGDIFS-EVVLLLQE  253 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~--~~~~~~ll~~~~~~~-~~~~~~~~  253 (281)
                      -           .....||+||.+|||...  ..++..+.. .+.+. .....++.
T Consensus       106 ~-----------~~~~~fDlIf~DPPY~~~~~~~~l~~l~~-~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         106 A-----------QKGTPHNIVFVDPPFRRGLLEETINLLED-NGWLADEALIYVES  149 (183)
T ss_dssp             S-----------SCCCCEEEEEECCSSSTTTHHHHHHHHHH-TTCEEEEEEEEEEE
T ss_pred             c-----------ccccccCEEEEcCccccchHHHHHHHHHH-CCCCCCCeEEEEEe
Confidence            1           334689999999999753  344444443 33343 33444443

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=2.4e-12  Score=110.63  Aligned_cols=110  Identities=20%  Similarity=0.303  Sum_probs=89.6

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~  196 (281)
                      -+.-+.-+..++..+++.++.+|||+|||+|.++..||+.   +++|+++|+++++++.|+++++..+   ++.+..+|+
T Consensus        85 qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~  164 (266)
T d1o54a_          85 QIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI  164 (266)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG
T ss_pred             cccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc
Confidence            3455678889999999999999999999999999999986   4699999999999999999988654   888988987


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcc-cHHHHHHhccCCCCcc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLPMGDIFS  245 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-~~~~~~~ll~~~~~~~  245 (281)
                      ...             .....+|.|+.+.|-.+ .-+.+.++|++||.+.
T Consensus       165 ~~~-------------~~~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv  201 (266)
T d1o54a_         165 SEG-------------FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFA  201 (266)
T ss_dssp             GGC-------------CSCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEE
T ss_pred             ccc-------------ccccceeeeEecCCCHHHHHHHHHhhcCCCCEEE
Confidence            543             12356899999877533 3356678888888763

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.34  E-value=2.1e-12  Score=109.95  Aligned_cols=95  Identities=20%  Similarity=0.295  Sum_probs=73.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcC
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      ..++++|||+|||+|..+..+++.+ .+|+|||+|+.|++.|+++....+   ++.++++|+...++.           .
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-----------~   90 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-----------L   90 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-----------C
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-----------c
Confidence            4477899999999999999998886 489999999999999998876543   799999999776542           2


Q ss_pred             CCCccEEEEcCCCccc-------H---HHHHHhccCCCCc
Q 023482          215 SSGFAKVVANIPFNIS-------T---DVIKQLLPMGDIF  244 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~~-------~---~~~~~ll~~~~~~  244 (281)
                      .+.||+|+++.-.++.       .   ..+.++|++||.+
T Consensus        91 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~  130 (252)
T d1ri5a_          91 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYF  130 (252)
T ss_dssp             SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEE
T ss_pred             cccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEE
Confidence            3679999997544332       1   2234677888765

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.33  E-value=3.2e-12  Score=103.86  Aligned_cols=110  Identities=15%  Similarity=0.317  Sum_probs=84.9

Q ss_pred             ccCCHHHHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~  197 (281)
                      ..+...+.+.+...+.. ..+.+|||++||+|.+++.++.+|+ +|++||.|+.+++.+++|+...   .+++++++|+.
T Consensus        22 RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~  101 (182)
T d2fhpa1          22 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN  101 (182)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             CcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch
Confidence            45556777778787764 3688999999999999999999977 8999999999999999998643   38999999997


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCCccc--HHHHHHhccC
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLPM  240 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~--~~~~~~ll~~  240 (281)
                      +.--.     +.   .....||+||.+|||...  ...+..+.+.
T Consensus       102 ~~l~~-----~~---~~~~~fDlIflDPPY~~~~~~~~l~~i~~~  138 (182)
T d2fhpa1         102 RALEQ-----FY---EEKLQFDLVLLDPPYAKQEIVSQLEKMLER  138 (182)
T ss_dssp             HHHHH-----HH---HTTCCEEEEEECCCGGGCCHHHHHHHHHHT
T ss_pred             hhhhh-----hc---ccCCCcceEEechhhhhhHHHHHHHHHHHC
Confidence            64110     00   344689999999999643  4566665543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.33  E-value=1.7e-12  Score=108.58  Aligned_cols=91  Identities=14%  Similarity=0.258  Sum_probs=72.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      .+++|||||||+|.++..+++.+.+|+|||+|+++++.|+++..  .+++++++|+.++++             ++.||+
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~--~~~~~~~~~~~~~~~-------------~~~fD~   84 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK--DGITYIHSRFEDAQL-------------PRRYDN   84 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC--SCEEEEESCGGGCCC-------------SSCEEE
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc--ccccccccccccccc-------------cccccc
Confidence            56789999999999999999988999999999999999998865  489999999988764             267999


Q ss_pred             EEEcCCCccc---HHHH----HHhccCCCCcce
Q 023482          221 VVANIPFNIS---TDVI----KQLLPMGDIFSE  246 (281)
Q Consensus       221 Vi~n~P~~~~---~~~~----~~ll~~~~~~~~  246 (281)
                      |++.--+++.   ..++    .+++++||.+..
T Consensus        85 I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i  117 (225)
T d2p7ia1          85 IVLTHVLEHIDDPVALLKRINDDWLAEGGRLFL  117 (225)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ccccceeEecCCHHHHHHHHHHHhcCCCceEEE
Confidence            9987555332   2222    366778776643

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.32  E-value=1.5e-12  Score=111.54  Aligned_cols=100  Identities=18%  Similarity=0.198  Sum_probs=79.1

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccch
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~  205 (281)
                      ..++.+.+  .++.+|||+|||+|.+++.+|..+ ++|+++|+|+.+++.+++|+..++   +++++++|+.+++.    
T Consensus        98 r~ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~----  171 (260)
T d2frna1          98 RVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----  171 (260)
T ss_dssp             HHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----
T ss_pred             HHHHHhhc--CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc----
Confidence            33444443  478999999999999999999886 599999999999999999988654   79999999988742    


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCcccH--HHHHHhccCCCCc
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNIST--DVIKQLLPMGDIF  244 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~~~--~~~~~ll~~~~~~  244 (281)
                               .+.||.|++|+|.....  +...+++++||.+
T Consensus       172 ---------~~~~D~Ii~~~p~~~~~~l~~a~~~l~~gG~l  203 (260)
T d2frna1         172 ---------ENIADRILMGYVVRTHEFIPKALSIAKDGAII  203 (260)
T ss_dssp             ---------CSCEEEEEECCCSSGGGGHHHHHHHEEEEEEE
T ss_pred             ---------CCCCCEEEECCCCchHHHHHHHHhhcCCCCEE
Confidence                     36799999998864322  3344677777755

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.8e-12  Score=106.90  Aligned_cols=107  Identities=19%  Similarity=0.188  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccc
Q 023482          127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~  204 (281)
                      ..+.+.+...+. .+|.+|||||||+|.++..+++.. .+|+|||+|+.+++.|+++....+ ++.++.+|+......  
T Consensus        40 ~~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--  116 (229)
T d1zx0a1          40 TPYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT--  116 (229)
T ss_dssp             HHHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG--
T ss_pred             HHHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccc--
Confidence            344455555554 467899999999999999999874 689999999999999999987654 788888887765321  


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCC------ccc-----HHHHHHhccCCCCc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPF------NIS-----TDVIKQLLPMGDIF  244 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~------~~~-----~~~~~~ll~~~~~~  244 (281)
                              ...++||.|+.+...      +..     -..+.++|++||.|
T Consensus       117 --------~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~  159 (229)
T d1zx0a1         117 --------LPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL  159 (229)
T ss_dssp             --------SCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred             --------cccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEE
Confidence                    234678888864322      211     13346889999876

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.9e-12  Score=109.96  Aligned_cols=110  Identities=12%  Similarity=0.120  Sum_probs=85.1

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcC-----------CCCeEE
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS-----------IDQLKV  191 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~-----------~~~v~~  191 (281)
                      ........+++.+.+.++++|||+|||+|..+..+|.. + .+++|||+++.+++.|+++...           .+++++
T Consensus       135 ~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~  214 (328)
T d1nw3a_         135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  214 (328)
T ss_dssp             CCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             hHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence            56788999999999999999999999999999999876 4 4899999999999999876542           348999


Q ss_pred             EEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccH-----HHHHHhccCCCCc
Q 023482          192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-----DVIKQLLPMGDIF  244 (281)
Q Consensus       192 ~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-----~~~~~ll~~~~~~  244 (281)
                      ++||+.+.++.+..+|          .|+|+.|.-.+...     ..+.+.+++|+.+
T Consensus       215 ~~gd~~~~~~~~~~~~----------advi~~~~~~f~~~~~~~l~e~~r~LKpGg~i  262 (328)
T d1nw3a_         215 ERGDFLSEEWRERIAN----------TSVIFVNNFAFGPEVDHQLKERFANMKEGGRI  262 (328)
T ss_dssp             EECCTTSHHHHHHHHH----------CSEEEECCTTTCHHHHHHHHHHHTTCCTTCEE
T ss_pred             EECcccccccccccCc----------ceEEEEcceecchHHHHHHHHHHHhCCCCcEE
Confidence            9999999887664443          37787764333221     1233566777765

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.2e-11  Score=110.47  Aligned_cols=115  Identities=18%  Similarity=0.203  Sum_probs=92.4

Q ss_pred             cCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCc
Q 023482          119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF  196 (281)
Q Consensus       119 ~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~  196 (281)
                      |..|......+.+.+++.+...++++|||+.||+|.+++.|++.+.+|+|||.++.+++.|+++...++  |++++.+|.
T Consensus       190 fQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~  269 (358)
T d1uwva2         190 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL  269 (358)
T ss_dssp             CCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCT
T ss_pred             hccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecch
Confidence            333334445566677777888888999999999999999999999999999999999999999987664  999999998


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCC
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMG  241 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~  241 (281)
                      .+.-....        .....+|+||.+||.....+++..+++..
T Consensus       270 ~~~~~~~~--------~~~~~~d~vilDPPR~G~~~~~~~l~~~~  306 (358)
T d1uwva2         270 EEDVTKQP--------WAKNGFDKVLLDPARAGAAGVMQQIIKLE  306 (358)
T ss_dssp             TSCCSSSG--------GGTTCCSEEEECCCTTCCHHHHHHHHHHC
T ss_pred             hhhhhhhh--------hhhccCceEEeCCCCccHHHHHHHHHHcC
Confidence            77421110        23467899999999988888888887643

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=8.4e-12  Score=107.26  Aligned_cols=90  Identities=16%  Similarity=0.222  Sum_probs=71.7

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~  204 (281)
                      +++.+++........+|+|+|||+|.++..+++. .++|+++|+|+.+++.|++|.+.++   ++.++.+|+.+...   
T Consensus        98 lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~---  174 (271)
T d1nv8a_          98 LVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK---  174 (271)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG---
T ss_pred             hhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccc---
Confidence            3555555544445678999999999999998876 6799999999999999999988664   68889999876432   


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                              ...+.||+||+||||-.
T Consensus       175 --------~~~~~fDlIVsNPPYI~  191 (271)
T d1nv8a_         175 --------EKFASIEMILSNPPYVK  191 (271)
T ss_dssp             --------GGTTTCCEEEECCCCBC
T ss_pred             --------cccCcccEEEEcccccC
Confidence                    23368999999999954

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.6e-12  Score=106.56  Aligned_cols=84  Identities=18%  Similarity=0.214  Sum_probs=64.7

Q ss_pred             CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ..+|||+|||+|.++..++..  +.+++|+|+++++++.|++|...++   ++.+++.+.....+..     +.. ...+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~-----~~~-~~~~  135 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDA-----LKE-ESEI  135 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTT-----STT-CCSC
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhh-----hhh-cccC
Confidence            358999999999999999986  7899999999999999999988663   7888887765432211     100 2346


Q ss_pred             CccEEEEcCCCcccH
Q 023482          217 GFAKVVANIPFNIST  231 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~~  231 (281)
                      .||+|++||||....
T Consensus       136 ~fD~ivsNPPY~~~~  150 (250)
T d2h00a1         136 IYDFCMCNPPFFANQ  150 (250)
T ss_dssp             CBSEEEECCCCC---
T ss_pred             ceeEEEecCcccccc
Confidence            799999999998544

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-11  Score=108.35  Aligned_cols=102  Identities=18%  Similarity=0.267  Sum_probs=74.6

Q ss_pred             HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhh
Q 023482          131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      +.+.+.....++++|||||||+|.+++.+|+.|+ +|+|+|.++.+...++......  .+++++++|+.+++++     
T Consensus        25 ~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~-----   99 (311)
T d2fyta1          25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP-----   99 (311)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCS-----
T ss_pred             HHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCc-----
Confidence            3444444556789999999999999999999975 8999999998875444333322  4899999999998753     


Q ss_pred             HHHhhcCCCCccEEEEcCCCccc-----H-HH---HHHhccCCCCc
Q 023482          208 LFERRKSSSGFAKVVANIPFNIS-----T-DV---IKQLLPMGDIF  244 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~~~~-----~-~~---~~~ll~~~~~~  244 (281)
                             ..+||+|++++..+..     . .+   ..++++++|.+
T Consensus       100 -------~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~i  138 (311)
T d2fyta1         100 -------VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSV  138 (311)
T ss_dssp             -------CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEE
T ss_pred             -------cccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEE
Confidence                   3689999997554321     1 22   34788888765

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.26  E-value=1.3e-11  Score=101.82  Aligned_cols=97  Identities=13%  Similarity=0.153  Sum_probs=74.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +...|||||||+|..+..+|+.  +.+++|||+++.++..|.++....  .|+.++++|+..+..      .    ...+
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~------~----~~~~   98 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD------V----FEPG   98 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH------H----CCTT
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhc------c----cCch
Confidence            4568999999999999999997  579999999999999999887655  499999999987641      1    2346


Q ss_pred             CccEEEEcCCCcc--------------cHHHHHHhccCCCCcceE
Q 023482          217 GFAKVVANIPFNI--------------STDVIKQLLPMGDIFSEV  247 (281)
Q Consensus       217 ~~d~Vi~n~P~~~--------------~~~~~~~ll~~~~~~~~~  247 (281)
                      .+|.|+.+.|-.+              .-..+.++|++||.+...
T Consensus        99 ~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1          99 EVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             SCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             hhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            7888887643322              124456888999977444

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=8.7e-12  Score=110.22  Aligned_cols=100  Identities=17%  Similarity=0.291  Sum_probs=74.7

Q ss_pred             HHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhh
Q 023482          132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      .+.......++++|||||||+|.++..+++.|+ +|+|+|.++ ++..|+++...+   ++++++++|+.+++++     
T Consensus        29 aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~-----  102 (328)
T d1g6q1_          29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLP-----  102 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS-----
T ss_pred             HHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCc-----
Confidence            344444445789999999999999999999875 999999996 667777766544   3899999999998754     


Q ss_pred             HHHhhcCCCCccEEEEcCCC-----cccH----HHHHHhccCCCCc
Q 023482          208 LFERRKSSSGFAKVVANIPF-----NIST----DVIKQLLPMGDIF  244 (281)
Q Consensus       208 ~v~~~~~~~~~d~Vi~n~P~-----~~~~----~~~~~ll~~~~~~  244 (281)
                             ..++|+|++.+..     ....    ....++++++|.+
T Consensus       103 -------~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~i  141 (328)
T d1g6q1_         103 -------FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI  141 (328)
T ss_dssp             -------SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEE
T ss_pred             -------ccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEE
Confidence                   3679999986432     2222    2225788888876

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=1.3e-11  Score=107.20  Aligned_cols=108  Identities=15%  Similarity=0.225  Sum_probs=75.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC------CeEEEEcCccccccc
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID------QLKVLQEDFVKCHIR  202 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~------~v~~~~gD~~~~~~~  202 (281)
                      ..+++...+...++.+|||+|||+|.++..|++.|.+|+|+|+|+.|++.|+++.....      +..+..+|+..++..
T Consensus        44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T d1xvaa_          44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  123 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccc
Confidence            44556666666677899999999999999999999999999999999999998865432      455666666544311


Q ss_pred             cchhhHHHhhcCCCCccEEEEc------CCCc--c------cHHHHHHhccCCCCcc
Q 023482          203 SHMLSLFERRKSSSGFAKVVAN------IPFN--I------STDVIKQLLPMGDIFS  245 (281)
Q Consensus       203 d~~~d~v~~~~~~~~~d~Vi~n------~P~~--~------~~~~~~~ll~~~~~~~  245 (281)
                      .         ...+.||.|++-      +|..  .      .-..+.++|++||.+-
T Consensus       124 ~---------~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li  171 (292)
T d1xvaa_         124 V---------PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV  171 (292)
T ss_dssp             S---------CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred             c---------CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEE
Confidence            0         234679988862      1111  0      1233457888888763

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=3.5e-11  Score=100.88  Aligned_cols=101  Identities=11%  Similarity=0.098  Sum_probs=79.8

Q ss_pred             HhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      .+.+.+|.+|||+|||+|..+..+++.   .++|+|+|+++.+++.++.+.+..+++..+.+|+.......         
T Consensus        68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~---------  138 (227)
T d1g8aa_          68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYR---------  138 (227)
T ss_dssp             CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGT---------
T ss_pred             ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccccc---------
Confidence            346789999999999999999999997   46999999999999999999888789999999986643211         


Q ss_pred             cCCCCccEEEEcCCCcccHH----HHHHhccCCCCcc
Q 023482          213 KSSSGFAKVVANIPFNISTD----VIKQLLPMGDIFS  245 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~~~----~~~~ll~~~~~~~  245 (281)
                      .....+|+|+.+.+......    ...++++++|.+-
T Consensus       139 ~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lv  175 (227)
T d1g8aa_         139 ALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGM  175 (227)
T ss_dssp             TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccceEEEEEEccccchHHHHHHHHHHhcccCCeEE
Confidence            22367899999988754432    2347788887653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.22  E-value=3e-11  Score=101.56  Aligned_cols=101  Identities=13%  Similarity=0.125  Sum_probs=74.7

Q ss_pred             HhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482          136 AAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       136 ~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      .+.+.++.+|||+|||+|+.+..+++.  +..|+|||+|+.|++.|+.+....+++..+.+|+...+...         .
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~---------~  139 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYA---------N  139 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGT---------T
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccc---------c
Confidence            345779999999999999999999987  36999999999999999999887789999999988754221         1


Q ss_pred             CCCCccEEEEcCCCcccH----HHHHHhccCCCCcc
Q 023482          214 SSSGFAKVVANIPFNIST----DVIKQLLPMGDIFS  245 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~~~~----~~~~~ll~~~~~~~  245 (281)
                      ....+|.++.........    ..+.++|+++|.+.
T Consensus       140 ~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~  175 (230)
T d1g8sa_         140 IVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM  175 (230)
T ss_dssp             TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccceeEEeeccccchHHHHHHHHHHHHhcccCceEE
Confidence            112345555555433222    23357888888653

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.22  E-value=6.1e-12  Score=111.14  Aligned_cols=98  Identities=24%  Similarity=0.267  Sum_probs=73.9

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~  198 (281)
                      ++.++.-....+..+ ..++++|||+|||+|.+++.++..|+ +|+++|+++.+++.|++|+..++   +++++++|+.+
T Consensus       128 ~flDqr~~r~~~~~~-~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~  206 (324)
T d2as0a2         128 FFLDQRENRLALEKW-VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE  206 (324)
T ss_dssp             CCSTTHHHHHHHGGG-CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cccchhhHHHHHHhh-cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhh
Confidence            334444433333322 24788999999999999999998875 89999999999999999998664   78999999876


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      .-..     +.   .....||+||.|||...
T Consensus       207 ~~~~-----~~---~~~~~fD~Vi~DpP~~~  229 (324)
T d2as0a2         207 EMEK-----LQ---KKGEKFDIVVLDPPAFV  229 (324)
T ss_dssp             HHHH-----HH---HTTCCEEEEEECCCCSC
T ss_pred             hhHH-----HH---hccCCCCchhcCCcccc
Confidence            3210     00   34578999999999753

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.20  E-value=4.9e-11  Score=98.36  Aligned_cols=97  Identities=14%  Similarity=0.233  Sum_probs=75.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ....|||||||+|.++..+|+.  ...++|+|+++.++..|.++....  .|+.++++|+.++...          ....
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~----------~~~~  100 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY----------FEDG  100 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT----------SCTT
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhh----------ccCC
Confidence            4568999999999999999997  679999999999999998877644  4999999999886411          2346


Q ss_pred             CccEEEEcCCCccc-----------H---HHHHHhccCCCCcceE
Q 023482          217 GFAKVVANIPFNIS-----------T---DVIKQLLPMGDIFSEV  247 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~-----------~---~~~~~ll~~~~~~~~~  247 (281)
                      ++|.|+.+.|--|.           .   ..+.++|++||.+...
T Consensus       101 ~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         101 EIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             CCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             ceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            78999888664332           2   3456888999887443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=1.6e-11  Score=107.89  Aligned_cols=93  Identities=15%  Similarity=0.210  Sum_probs=69.8

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      ..++++|||||||+|.++..+++.|+ +|+|+|.++.+ ..++++...+   ++++++++|+.+++++            
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~------------   97 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELP------------   97 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCS------------
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHcccc------------
Confidence            34788999999999999999999975 89999999765 5555554433   3899999999998753            


Q ss_pred             CCCccEEEEcCCCcc------cHH---HHHHhccCCCCc
Q 023482          215 SSGFAKVVANIPFNI------STD---VIKQLLPMGDIF  244 (281)
Q Consensus       215 ~~~~d~Vi~n~P~~~------~~~---~~~~ll~~~~~~  244 (281)
                      ..++|+|++....+.      ...   ...++++++|.+
T Consensus        98 ~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~i  136 (316)
T d1oria_          98 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLI  136 (316)
T ss_dssp             SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEE
T ss_pred             cceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEE
Confidence            367999998644321      122   335888888866

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.17  E-value=2.1e-11  Score=100.21  Aligned_cols=87  Identities=18%  Similarity=0.246  Sum_probs=67.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK  220 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~  220 (281)
                      ++.+|||||||+|.++..++    +++|||+|+.+++.|+++     +++++++|+.++++.+            .+||+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~-----~~~~~~~d~~~l~~~~------------~~fD~   94 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR-----GVFVLKGTAENLPLKD------------ESFDF   94 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT-----TCEEEECBTTBCCSCT------------TCEEE
T ss_pred             CCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc-----cccccccccccccccc------------ccccc
Confidence            45689999999999988774    579999999999999874     6899999999998643            67899


Q ss_pred             EEEcCCCcccH------HHHHHhccCCCCcceEE
Q 023482          221 VVANIPFNIST------DVIKQLLPMGDIFSEVV  248 (281)
Q Consensus       221 Vi~n~P~~~~~------~~~~~ll~~~~~~~~~~  248 (281)
                      |+++.-++...      ..+.++++++|.+....
T Consensus        95 I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_          95 ALMVTTICFVDDPERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             EEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccccccchhhhhhcCCCCceEEEEe
Confidence            99875443322      23357788888764444

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.14  E-value=4.1e-11  Score=104.54  Aligned_cols=97  Identities=19%  Similarity=0.159  Sum_probs=74.0

Q ss_pred             ccCCHHHHHHHHHHh-cCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAA-AVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l-~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~----~~v~~~~gD~~  197 (281)
                      |.-+.....++.+.+ ...++.+|||++||+|.+++.++..|++|++||.|+.+++.|++|...+    .+++++++|+.
T Consensus       113 f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~  192 (309)
T d2igta1         113 FPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM  192 (309)
T ss_dssp             CGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH
T ss_pred             ccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHH
Confidence            333444444444443 2346789999999999999999999999999999999999999998643    26999999997


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCCC
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~  227 (281)
                      ++--     ...   .....||+||.+||.
T Consensus       193 ~~l~-----~~~---~~~~~fD~IilDPP~  214 (309)
T d2igta1         193 KFIQ-----REE---RRGSTYDIILTDPPK  214 (309)
T ss_dssp             HHHH-----HHH---HHTCCBSEEEECCCS
T ss_pred             HhHH-----HHh---hcCCCCCEEEECCCc
Confidence            6421     001   345789999999995

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.13  E-value=3e-11  Score=106.30  Aligned_cols=95  Identities=19%  Similarity=0.156  Sum_probs=73.7

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH  200 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~  200 (281)
                      ++.+++....+.+   ..++++|||++||+|.++..++..+.+|+++|+|+.+++.|++|...++  +++++++|+.++.
T Consensus       130 ~flDqr~~r~~~~---~~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~  206 (318)
T d1wxxa2         130 AYLDQRENRLYME---RFRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL  206 (318)
T ss_dssp             CCGGGHHHHHHGG---GCCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHH
T ss_pred             cchhhhhhHHHHH---HhCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHh
Confidence            4445544444333   3368899999999999999998767799999999999999999998665  8999999987742


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      -.     +.   .....||+|+.|||..
T Consensus       207 ~~-----~~---~~~~~fD~Vi~DpP~~  226 (318)
T d1wxxa2         207 RR-----LE---KEGERFDLVVLDPPAF  226 (318)
T ss_dssp             HH-----HH---HTTCCEEEEEECCCCS
T ss_pred             hh-----hH---hhhcCCCEEEEcCCcc
Confidence            10     00   3457899999999964

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.11  E-value=1.3e-10  Score=94.09  Aligned_cols=117  Identities=16%  Similarity=0.247  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCccccc
Q 023482          127 SEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCH  200 (281)
Q Consensus       127 ~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~~~~  200 (281)
                      ..+.+.+...+.. -.+.+|||+.||||.+++..+.+|+ +|+.||.|+.+++.+++|++..+    ...++..|+.+.-
T Consensus        28 ~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l  107 (183)
T d2ifta1          28 DRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL  107 (183)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred             HHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccc
Confidence            3455555555543 2667999999999999999999987 99999999999999999987542    5677777765532


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCccc--HHHHHHhccCCCCcc-eEEEeehh
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLPMGDIFS-EVVLLLQE  253 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~--~~~~~~ll~~~~~~~-~~~~~~~~  253 (281)
                      ...         .....||+||.+|||...  .+.+..+... +.+. ...++++.
T Consensus       108 ~~~---------~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~-~~L~~~~liiiE~  153 (183)
T d2ifta1         108 KQP---------QNQPHFDVVFLDPPFHFNLAEQAISLLCEN-NWLKPNALIYVET  153 (183)
T ss_dssp             TSC---------CSSCCEEEEEECCCSSSCHHHHHHHHHHHT-TCEEEEEEEEEEE
T ss_pred             ccc---------ccCCcccEEEechhHhhhhHHHHHHHHHHh-CCcCCCcEEEEEe
Confidence            110         234579999999999664  3555555543 3443 34444443

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.08  E-value=6.6e-11  Score=104.00  Aligned_cols=94  Identities=14%  Similarity=0.243  Sum_probs=72.7

Q ss_pred             ccCCH-HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCc
Q 023482          123 YMLNS-EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~-~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~  196 (281)
                      ++.++ .....++..+.  ++++|||++||+|.+++.++..|+ +|++||+|+.+++.|++|...++    +++++++|+
T Consensus       127 lflDqR~~r~~l~~~~~--~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~  204 (317)
T d2b78a2         127 IFLDQRQVRNELINGSA--AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV  204 (317)
T ss_dssp             SCGGGHHHHHHHHHTTT--BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH
T ss_pred             CcHHHHHHHHHHHHHhh--CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccH
Confidence            33443 34455555444  688999999999999999888776 89999999999999999987542    799999999


Q ss_pred             cccccccchhhHHHhh-cCCCCccEEEEcCCC
Q 023482          197 VKCHIRSHMLSLFERR-KSSSGFAKVVANIPF  227 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~-~~~~~~d~Vi~n~P~  227 (281)
                      .+.-         ... .....||+||.+||.
T Consensus       205 ~~~l---------~~~~~~~~~fD~Ii~DPP~  227 (317)
T d2b78a2         205 FDYF---------KYARRHHLTYDIIIIDPPS  227 (317)
T ss_dssp             HHHH---------HHHHHTTCCEEEEEECCCC
T ss_pred             HHHH---------HHHHhhcCCCCEEEEcChh
Confidence            6531         111 345789999999995

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.04  E-value=4e-10  Score=99.15  Aligned_cols=97  Identities=14%  Similarity=0.191  Sum_probs=75.0

Q ss_pred             cCccccCCHHHHHHHHHHh----cCCCCCEEEEEcCCccHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHhcCC-
Q 023482          119 LGQHYMLNSEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNA-------GATVLAIEKDQHMVGLVRERFASI-  186 (281)
Q Consensus       119 ~g~~~~~~~~~~~~l~~~l----~~~~~~~VLDiGcG~G~~t~~la~~-------~~~v~gvD~s~~~l~~a~~~~~~~-  186 (281)
                      .|+ +++++.++..|...+    ...++.+|||.|||+|.++..+...       ..+++|+|+++.++..|+.+.... 
T Consensus        92 ~g~-~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~  170 (328)
T d2f8la1          92 VNH-QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR  170 (328)
T ss_dssp             GGG-CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             CCe-EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh
Confidence            344 778888877666543    4566779999999999999888653       237999999999999998876543 


Q ss_pred             CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       187 ~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      .+..+.++|.....             ....||+|++||||..
T Consensus       171 ~~~~~~~~d~~~~~-------------~~~~fD~vi~NPPy~~  200 (328)
T d2f8la1         171 QKMTLLHQDGLANL-------------LVDPVDVVISDLPVGY  200 (328)
T ss_dssp             CCCEEEESCTTSCC-------------CCCCEEEEEEECCCSE
T ss_pred             hhhhhhcccccccc-------------ccccccccccCCCCCC
Confidence            37788888876543             2368999999999953

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.03  E-value=3.2e-10  Score=96.24  Aligned_cols=100  Identities=18%  Similarity=0.244  Sum_probs=75.4

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccc
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~  204 (281)
                      ...+++.+......+|||||||+|.++..++++  +.+++++|+ +++++.++++....   ++++++.+|+.+..    
T Consensus        69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~----  143 (253)
T d1tw3a2          69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL----  143 (253)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC----
T ss_pred             HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc----
Confidence            355667777777889999999999999999987  569999998 67899999887654   38999999987631    


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCc-ccHH----HH---HHhccCCCCc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFN-ISTD----VI---KQLLPMGDIF  244 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~-~~~~----~~---~~ll~~~~~~  244 (281)
                                +..||+|+.+.-++ +..+    ++   .+.+++||.+
T Consensus       144 ----------~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l  181 (253)
T d1tw3a2         144 ----------PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRI  181 (253)
T ss_dssp             ----------SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEE
T ss_pred             ----------ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEE
Confidence                      25689999865543 3332    23   3556777765

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=7.1e-10  Score=100.05  Aligned_cols=111  Identities=16%  Similarity=0.258  Sum_probs=78.9

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcC-----------CCCeEE
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS-----------IDQLKV  191 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~-----------~~~v~~  191 (281)
                      +.+..+..+++.+.++++++|||||||+|..+..+|.. + ++++|||+++.+++.|+++...           .+.+.+
T Consensus       200 l~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~  279 (406)
T d1u2za_         200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF  279 (406)
T ss_dssp             BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred             CCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence            46788999999999999999999999999999999987 5 4899999999999999887642           124444


Q ss_pred             -EEcCccccccccchhhHHHhhcCCCCccEEEEcC-CCccc----HHHHHHhccCCCCc
Q 023482          192 -LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI-PFNIS----TDVIKQLLPMGDIF  244 (281)
Q Consensus       192 -~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~-P~~~~----~~~~~~ll~~~~~~  244 (281)
                       ..+++.+.+..+..         ...+|+|+.|. .+...    -..+.+.+++|+.+
T Consensus       280 ~~~~~f~~~~~~d~~---------~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrI  329 (406)
T d1u2za_         280 SLKKSFVDNNRVAEL---------IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKI  329 (406)
T ss_dssp             EESSCSTTCHHHHHH---------GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEE
T ss_pred             eeeechhhccccccc---------cccceEEEEecccCchHHHHHHHHHHHhcCCCcEE
Confidence             45666554432211         13467888763 22111    12334677888765

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.02  E-value=5e-10  Score=91.30  Aligned_cols=94  Identities=10%  Similarity=0.290  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccc
Q 023482          128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~  204 (281)
                      -+.+.+++.+.+.++..+||++||+|..+..+++.  +++|+|+|.++.|++.|++++...+ ++.++++++.+++... 
T Consensus        10 Vll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~-   88 (192)
T d1m6ya2          10 VMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL-   88 (192)
T ss_dssp             TTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH-
T ss_pred             hHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH-
Confidence            35677888899999999999999999999999986  6799999999999999999988764 8999999998865321 


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCCc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                           .. ...+.+|.|+.++.++
T Consensus        89 -----~~-~~~~~vdgIl~DlGvS  106 (192)
T d1m6ya2          89 -----KT-LGIEKVDGILMDLGVS  106 (192)
T ss_dssp             -----HH-TTCSCEEEEEEECSCC
T ss_pred             -----HH-cCCCCcceeeeccchh
Confidence                 11 2347899999998764

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.98  E-value=7.3e-10  Score=100.99  Aligned_cols=102  Identities=19%  Similarity=0.252  Sum_probs=82.6

Q ss_pred             CCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---------------CCEEEEEeCCHHHHH
Q 023482          113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---------------GATVLAIEKDQHMVG  177 (281)
Q Consensus       113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---------------~~~v~gvD~s~~~l~  177 (281)
                      ...+...|+ |+|++.+++.|++.+.+.++.+|+|..||+|.+...+.+.               ...++|+|+++.+..
T Consensus       135 ~~~~k~~G~-f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~  213 (425)
T d2okca1         135 QDKKSGAGQ-YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVT  213 (425)
T ss_dssp             TCTTTCCGG-GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHH
T ss_pred             Hhhhccchh-hccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHH
Confidence            345556777 9999999999999999988899999999999999888663               124999999999999


Q ss_pred             HHHHHhcCC----CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          178 LVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       178 ~a~~~~~~~----~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      .|+.+.--.    .+..+.++|..+.+             ....||+|++||||.
T Consensus       214 la~~n~~l~g~~~~~~~i~~~d~l~~~-------------~~~~fD~Ii~NPPfg  255 (425)
T d2okca1         214 LASMNLYLHGIGTDRSPIVCEDSLEKE-------------PSTLVDVILANPPFG  255 (425)
T ss_dssp             HHHHHHHHTTCCSSCCSEEECCTTTSC-------------CSSCEEEEEECCCSS
T ss_pred             HHHhhhhhcCCccccceeecCchhhhh-------------cccccceEEecCCCC
Confidence            998776422    25667888877643             236799999999995

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.2e-09  Score=90.72  Aligned_cols=116  Identities=21%  Similarity=0.208  Sum_probs=86.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF  196 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~  196 (281)
                      ....++....+...+....+++|||||||+|++|..++..   +++|+++|.+++..+.|++++...+   +++++.||+
T Consensus        41 ~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda  120 (219)
T d2avda1          41 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  120 (219)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeeh
Confidence            3456666666666666667889999999999999999985   5799999999999999999987553   899999999


Q ss_pred             cccccccchhhHHHhhcCCCCccEEEEcCCCcccH---HHHHHhccCCCCc
Q 023482          197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGDIF  244 (281)
Q Consensus       197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~---~~~~~ll~~~~~~  244 (281)
                      .+....     .+.. ...+.||.|+.+.-.....   +...+++++||.+
T Consensus       121 ~e~l~~-----~~~~-~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvi  165 (219)
T d2avda1         121 LETLDE-----LLAA-GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGIL  165 (219)
T ss_dssp             HHHHHH-----HHHT-TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEE
T ss_pred             hhcchh-----hhhh-cccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEE
Confidence            774211     1100 2346799999986544333   3445777777765

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.97  E-value=4.9e-10  Score=92.49  Aligned_cols=86  Identities=21%  Similarity=0.306  Sum_probs=70.8

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH  200 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~  200 (281)
                      +|++.+++.|++.+...++.+|||.|||+|.++..+.+.   ..+++|+|+++.++..+       .+..++++|....+
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~-------~~~~~~~~~~~~~~   74 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE   74 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc-------ccceeeeeehhccc
Confidence            588999999999999999999999999999998888764   45899999998765332       25678899987754


Q ss_pred             cccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          201 IRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                                   ....||.|++||||..
T Consensus        75 -------------~~~~fd~ii~npP~~~   90 (223)
T d2ih2a1          75 -------------PGEAFDLILGNPPYGI   90 (223)
T ss_dssp             -------------CSSCEEEEEECCCCCC
T ss_pred             -------------cccccceecccCcccc
Confidence                         2367999999999953

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.6e-10  Score=97.99  Aligned_cols=98  Identities=15%  Similarity=0.163  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHc--------CCEEEEEeCCHHHHHHHHHHhcCCC---Ce--EEEEcCccccccccchhhH
Q 023482          142 GDIVLEIGPGTGSLTNVLLNA--------GATVLAIEKDQHMVGLVRERFASID---QL--KVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~--------~~~v~gvD~s~~~l~~a~~~~~~~~---~v--~~~~gD~~~~~~~d~~~d~  208 (281)
                      ..+|||||||+|.++..++..        ..+++|||+|+.|++.|++++....   ++  .+...++.++.     .+.
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  115 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQ-----SRM  115 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHH-----HHH
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhc-----chh
Confidence            347999999999998888653        2378999999999999999987543   33  33444443221     010


Q ss_pred             HHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcc
Q 023482          209 FERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFS  245 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~  245 (281)
                      .. ....+.||+|++..-+++..      .-+.++++++|.+-
T Consensus       116 ~~-~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~  157 (280)
T d1jqea_         116 LE-KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKML  157 (280)
T ss_dssp             TT-SSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEE
T ss_pred             cc-cCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEE
Confidence            00 03457899999975544332      23347778877653

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.86  E-value=4.7e-09  Score=87.58  Aligned_cols=115  Identities=11%  Similarity=0.123  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccc
Q 023482          125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK  198 (281)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~  198 (281)
                      ..+.....+...+....+++|||||+++|++|..|+..   +++|+++|.+++..+.|++++++.+   ++++++||+.+
T Consensus        43 ~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~  122 (227)
T d1susa1          43 TSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP  122 (227)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH
Confidence            44554445544455556789999999999999999975   6799999999999999999998664   79999999976


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCCcc---cHHHHHHhccCCCCc
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI---STDVIKQLLPMGDIF  244 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~---~~~~~~~ll~~~~~~  244 (281)
                      .-..     +...-...+.||.||.+.--..   .-+.+..++.+|+.+
T Consensus       123 ~L~~-----l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGii  166 (227)
T d1susa1         123 VLDE-----MIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVI  166 (227)
T ss_dssp             HHHH-----HHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCE
T ss_pred             HHHH-----HHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEE
Confidence            4210     0000012467999999743322   224456788888875

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.8e-09  Score=88.92  Aligned_cols=47  Identities=11%  Similarity=0.136  Sum_probs=40.9

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI  186 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~  186 (281)
                      .++.+|||||||+|..+..++..+. +|+|+|+|+.+++.|+++++..
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~   97 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE   97 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhc
Confidence            4567999999999999888887755 7999999999999999987653

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.76  E-value=2.2e-08  Score=84.90  Aligned_cols=101  Identities=22%  Similarity=0.270  Sum_probs=73.9

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccc
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~  204 (281)
                      ...+++.+......+|||||||+|.++..++++  +.+++++|+ +++++.+++++...   ++++++.+|+.+ +.   
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~---  144 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL---  144 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC---
T ss_pred             HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-cc---
Confidence            345556666667789999999999999999997  679999998 78999999887644   389999999876 22   


Q ss_pred             hhhHHHhhcCCCCccEEEEcCCC-cccHH----HHH---HhccCCCCcc
Q 023482          205 MLSLFERRKSSSGFAKVVANIPF-NISTD----VIK---QLLPMGDIFS  245 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P~-~~~~~----~~~---~ll~~~~~~~  245 (281)
                                +..+|+|+...-+ ++..+    +++   +.+++++.+.
T Consensus       145 ----------p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~ll  183 (256)
T d1qzza2         145 ----------PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLL  183 (256)
T ss_dssp             ----------SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------cccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeE
Confidence                      2458888876544 34332    233   5567776543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=2e-08  Score=82.97  Aligned_cols=96  Identities=14%  Similarity=0.135  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccc
Q 023482          126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC  199 (281)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~  199 (281)
                      .++.-+.+...+...++++|||||||+|++|+.|+..   +++|+++|+++.+++.|+.++...+   +|+++.||+.++
T Consensus        41 ~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~  120 (214)
T d2cl5a1          41 GDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL  120 (214)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccc
Confidence            3444444444445556789999999999999999975   5799999999999999999887543   799999999875


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCC
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPF  227 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~  227 (281)
                      -..     +... .....||.|+.+.-.
T Consensus       121 l~~-----l~~~-~~~~~~D~ifiD~~~  142 (214)
T d2cl5a1         121 IPQ-----LKKK-YDVDTLDMVFLDHWK  142 (214)
T ss_dssp             GGG-----HHHH-SCCCCEEEEEECSCG
T ss_pred             ccc-----hhhc-ccccccceeeecccc
Confidence            211     0000 233679999987543

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.4e-08  Score=94.77  Aligned_cols=102  Identities=14%  Similarity=0.090  Sum_probs=73.1

Q ss_pred             CCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--------------------CCEEEEEeCCHH
Q 023482          115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--------------------GATVLAIEKDQH  174 (281)
Q Consensus       115 ~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--------------------~~~v~gvD~s~~  174 (281)
                      .+...|+ |+|++.+++.|++.+.+.++.+|+|..||+|.+...+.+.                    ...++|+|+++.
T Consensus       139 ~~~~~Gq-fyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~  217 (524)
T d2ar0a1         139 TKSGAGQ-YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG  217 (524)
T ss_dssp             ------C-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred             hccccch-hccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHH
Confidence            3444567 9999999999999999999999999999999998877552                    125899999999


Q ss_pred             HHHHHHHHhcCCC-C------eEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          175 MVGLVRERFASID-Q------LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       175 ~l~~a~~~~~~~~-~------v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      +...|+.+.--.+ .      -.+..+|....+       .    .....||+|++||||.
T Consensus       218 ~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d-------~----~~~~kfD~Ii~NPPfg  267 (524)
T d2ar0a1         218 TRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-------G----ENLPKAHIVATNPPFG  267 (524)
T ss_dssp             HHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHH-------H----HTSCCEEEEEECCCCT
T ss_pred             HHHHHHHHHHhhcccccccccchhhhhhhhhhc-------c----cccccceeEEecCCcc
Confidence            9999988765332 1      123333333211       1    2346899999999995

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.49  E-value=5e-07  Score=72.39  Aligned_cols=112  Identities=14%  Similarity=0.247  Sum_probs=84.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhH
Q 023482          129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      +++.+++.+.+.++..++|..+|.|..+..+.+.+++|+|+|.++.+++.|+...  ..++.++++++.++.-      .
T Consensus         6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~--~~~~~~~~~~f~~~~~------~   77 (182)
T d1wg8a2           6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH--LPGLTVVQGNFRHLKR------H   77 (182)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--CTTEEEEESCGGGHHH------H
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc--ccceeEeehHHHHHHH------H
Confidence            4667778888899999999999999999999999889999999999999998753  3589999999987642      1


Q ss_pred             HHhhcCCCCccEEEEcCCCcccH---------------HHHHHhccCCCCcceEEE
Q 023482          209 FERRKSSSGFAKVVANIPFNIST---------------DVIKQLLPMGDIFSEVVL  249 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~~~~~---------------~~~~~ll~~~~~~~~~~~  249 (281)
                      +.. ...+.+|.|+.++-+....               +....++++++.+....+
T Consensus        78 l~~-~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          78 LAA-LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             HHH-TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHH-cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            111 2336799999988664332               222356666666544443

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.3e-07  Score=80.28  Aligned_cols=47  Identities=9%  Similarity=0.032  Sum_probs=39.2

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcC
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS  185 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~  185 (281)
                      ...+.+|||||||+|.++...+.. ..+|+|+|+++.|++.+++++.+
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhc
Confidence            346789999999999887655544 56999999999999999988754

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.33  E-value=6.8e-07  Score=76.31  Aligned_cols=94  Identities=19%  Similarity=0.267  Sum_probs=70.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcC------------CCCeEEEEcCccccccccch
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS------------IDQLKVLQEDFVKCHIRSHM  205 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~------------~~~v~~~~gD~~~~~~~d~~  205 (281)
                      ...+++||.||.|.|..+..+.+. ..+|+.||+|+.+++.|++.+..            .++++++.+|+.+.-     
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l-----  144 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI-----  144 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH-----
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH-----
Confidence            346679999999999999998876 34899999999999999986632            248999999997642     


Q ss_pred             hhHHHhhcCCCCccEEEEcCCCcccH----------HHHHHhccCCCCc
Q 023482          206 LSLFERRKSSSGFAKVVANIPFNIST----------DVIKQLLPMGDIF  244 (281)
Q Consensus       206 ~d~v~~~~~~~~~d~Vi~n~P~~~~~----------~~~~~ll~~~~~~  244 (281)
                             ....+||+||.+++-....          ..+++.|.++|.+
T Consensus       145 -------~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~  186 (276)
T d1mjfa_         145 -------KNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIY  186 (276)
T ss_dssp             -------HHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEE
T ss_pred             -------hccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceE
Confidence                   2246799999875432211          3345677777765

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.4e-06  Score=74.89  Aligned_cols=88  Identities=14%  Similarity=0.138  Sum_probs=72.4

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccc
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH  204 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~  204 (281)
                      .......+.+.++++|||+++|.|.=|..++..   ..+|+++|+++.-++.+++++.+.+  ++.+...|+..++..+ 
T Consensus        83 S~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~-  161 (293)
T d2b9ea1          83 SCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-  161 (293)
T ss_dssp             GGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-
T ss_pred             ccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccc-
Confidence            334555667889999999999999999888875   4699999999999999999998775  8999999998876433 


Q ss_pred             hhhHHHhhcCCCCccEEEEcCC
Q 023482          205 MLSLFERRKSSSGFAKVVANIP  226 (281)
Q Consensus       205 ~~d~v~~~~~~~~~d~Vi~n~P  226 (281)
                              ...+.||.|+.++|
T Consensus       162 --------~~~~~fD~VL~DaP  175 (293)
T d2b9ea1         162 --------PRYHEVHYILLDPS  175 (293)
T ss_dssp             --------GGGTTEEEEEECCC
T ss_pred             --------cccceeeEEeecCc
Confidence                    22367999999988

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.27  E-value=5.8e-07  Score=75.35  Aligned_cols=85  Identities=18%  Similarity=0.244  Sum_probs=65.5

Q ss_pred             HHHHhcCCCC--CEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-----------CCeEEEEcCcccc
Q 023482          133 LAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------DQLKVLQEDFVKC  199 (281)
Q Consensus       133 l~~~l~~~~~--~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-----------~~v~~~~gD~~~~  199 (281)
                      +.+.++.+.+  .+|||.-||.|..+..++..|++|+++|.++.+....+..+.+.           .+++++++|..++
T Consensus        78 l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~  157 (250)
T d2oyra1          78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA  157 (250)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH
T ss_pred             HHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH
Confidence            4445554444  48999999999999999999999999999998877666544321           2799999998775


Q ss_pred             ccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482          200 HIRSHMLSLFERRKSSSGFAKVVANIPFN  228 (281)
Q Consensus       200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~  228 (281)
                      -.           ...+.||+|+.+|+|.
T Consensus       158 L~-----------~~~~~~DvIYlDPMFp  175 (250)
T d2oyra1         158 LT-----------DITPRPQVVYLDPMFP  175 (250)
T ss_dssp             ST-----------TCSSCCSEEEECCCCC
T ss_pred             Hh-----------ccCCCCCEEEECCCCc
Confidence            32           1235689999999994

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.26  E-value=7e-07  Score=74.26  Aligned_cols=120  Identities=13%  Similarity=0.169  Sum_probs=74.9

Q ss_pred             CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHhcCCC
Q 023482          114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFASID  187 (281)
Q Consensus       114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~------~~~v~gvD~s~~~l~~a~~~~~~~~  187 (281)
                      ....|.|...+..|.-+..+-+.+.-.++++|||||++.|.++..++..      .++|+++|+++........   ...
T Consensus        53 ~~~~w~G~p~~k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~---~~~  129 (232)
T d2bm8a1          53 SPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---DME  129 (232)
T ss_dssp             SCCEETTEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---GCT
T ss_pred             cCccccceecccCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc---ccc
Confidence            4556778866666665555555554446779999999999999877742      4699999998754432221   225


Q ss_pred             CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEc--CCCcccH-H-HHHHhccCCCCc
Q 023482          188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN--IPFNIST-D-VIKQLLPMGDIF  244 (281)
Q Consensus       188 ~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n--~P~~~~~-~-~~~~ll~~~~~~  244 (281)
                      ++++++||..+....+    .    .....+|.||-+  ..+.... . ...++++.|+.+
T Consensus       130 ~I~~i~gDs~~~~~~~----~----l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~i  182 (232)
T d2bm8a1         130 NITLHQGDCSDLTTFE----H----LREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYF  182 (232)
T ss_dssp             TEEEEECCSSCSGGGG----G----GSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEE
T ss_pred             ceeeeecccccHHHHH----H----HHhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEE
Confidence            9999999987654321    1    122345666654  2332111 1 123677777743

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.18  E-value=2.3e-06  Score=74.13  Aligned_cols=97  Identities=15%  Similarity=0.274  Sum_probs=73.4

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC-------CCCeEEEEcCccccccccchhhHH
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~-------~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      ...+++||.||.|.|..+..+++.  ..+|++||+++..++.|++.+..       .++++++.+|+.+.-.        
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~--------  146 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE--------  146 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH--------
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhh--------
Confidence            346689999999999999999876  45999999999999999988632       2489999999987521        


Q ss_pred             HhhcCCCCccEEEEcC--CCcc--------cH---HHHHHhccCCCCcce
Q 023482          210 ERRKSSSGFAKVVANI--PFNI--------ST---DVIKQLLPMGDIFSE  246 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~--P~~~--------~~---~~~~~ll~~~~~~~~  246 (281)
                         .....||+||.++  |+..        ..   ..+++.|+++|.+..
T Consensus       147 ---~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~  193 (312)
T d1uira_         147 ---RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM  193 (312)
T ss_dssp             ---HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred             ---hcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence               3346899999865  3321        11   345677788887643

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.13  E-value=3.4e-06  Score=72.38  Aligned_cols=94  Identities=15%  Similarity=0.164  Sum_probs=69.7

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ..+++||-||.|.|..+..+++.  ..+|++||+|+.+++.+++.++.      .++++++.+|+.+.--          
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~----------  157 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR----------  157 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG----------
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHh----------
Confidence            45679999999999999999986  35999999999999999987642      3599999999987532          


Q ss_pred             hcCCCCccEEEEcCCCcc--------cH---HHHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIPFNI--------ST---DVIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~--------~~---~~~~~ll~~~~~~  244 (281)
                       .....||+||.+++-..        ..   ..+++.|.++|.+
T Consensus       158 -~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~  200 (295)
T d1inla_         158 -KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVF  200 (295)
T ss_dssp             -GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEE
T ss_pred             -cCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEE
Confidence             34467999998753211        11   2345666666655

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.06  E-value=5.9e-06  Score=70.23  Aligned_cols=94  Identities=17%  Similarity=0.239  Sum_probs=71.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhc------CCCCeEEEEcCccccccccchhhHHHh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~------~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ..+++||-||-|.|..+..+.+.  ..+|+.||+|+..++.|++.++      ..++++++.+|+.+.-.          
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~----------  143 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA----------  143 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH----------
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHh----------
Confidence            45679999999999999999986  3599999999999999998763      22499999999977421          


Q ss_pred             hcCCCCccEEEEcCCC------cc-c---HHHHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIPF------NI-S---TDVIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~------~~-~---~~~~~~ll~~~~~~  244 (281)
                       ....+||+|+.+++-      +. .   -..+++.|+++|.+
T Consensus       144 -~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~  185 (274)
T d1iy9a_         144 -KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIF  185 (274)
T ss_dssp             -TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEE
T ss_pred             -hcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceE
Confidence             334689999987532      11 1   14455677777765

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=7.3e-06  Score=69.97  Aligned_cols=96  Identities=16%  Similarity=0.251  Sum_probs=71.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhc------CCCCeEEEEcCccccccccchhhHHH
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~------~~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      ...+++||-||-|.|..+..+.+.  ..+|+.||+++.+++.|++.++      ..++++++.+|+.+.--         
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~---------  146 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK---------  146 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH---------
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHh---------
Confidence            346689999999999999999986  4599999999999999998764      23599999999887521         


Q ss_pred             hhcCCCCccEEEEcCC--Cccc--------HHHHHHhccCCCCcc
Q 023482          211 RRKSSSGFAKVVANIP--FNIS--------TDVIKQLLPMGDIFS  245 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P--~~~~--------~~~~~~ll~~~~~~~  245 (281)
                        ...++||+||.+++  ....        -..+++.|+++|.+.
T Consensus       147 --~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v  189 (285)
T d2o07a1         147 --QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLC  189 (285)
T ss_dssp             --TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEE
T ss_pred             --cCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEE
Confidence              23468999999753  2211        133456777777653

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.02  E-value=6e-06  Score=71.25  Aligned_cols=95  Identities=16%  Similarity=0.277  Sum_probs=70.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCC------CCeEEEEcCccccccccchhhHHH
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~------~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      ...+++||-||-|.|..+..+.+..  .+|+.||+|+.+++.+++.++..      ++++++.+|+.+.--         
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~---------  174 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK---------  174 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH---------
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHH---------
Confidence            3466799999999999999999873  59999999999999999987532      489999999987521         


Q ss_pred             hhcCCCCccEEEEcCCCccc------H----HHHHHhccCCCCc
Q 023482          211 RRKSSSGFAKVVANIPFNIS------T----DVIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~------~----~~~~~ll~~~~~~  244 (281)
                        .....||+||.+++-...      +    ..+++.|.++|.+
T Consensus       175 --~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~  216 (312)
T d2b2ca1         175 --NHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGIL  216 (312)
T ss_dssp             --HCTTCEEEEEECCC-------------HHHHHHHHEEEEEEE
T ss_pred             --hCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEE
Confidence              345789999987532111      1    3345666666655

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.00  E-value=1.1e-05  Score=69.67  Aligned_cols=92  Identities=14%  Similarity=0.245  Sum_probs=74.2

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV  197 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~  197 (281)
                      ++.+..........+.+.+|++|||+++|.|.=|..++..   .+.++++|+++.-+..++.+..+.+  ++.+.+.|..
T Consensus        98 ~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~  177 (313)
T d1ixka_          98 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL  177 (313)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGG
T ss_pred             EEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccc
Confidence            4444455556667778899999999999999988888775   4589999999999999998887654  8888888887


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEcCC
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P  226 (281)
                      .++.            ....||.|+.++|
T Consensus       178 ~~~~------------~~~~fD~ILvDaP  194 (313)
T d1ixka_         178 HIGE------------LNVEFDKILLDAP  194 (313)
T ss_dssp             GGGG------------GCCCEEEEEEECC
T ss_pred             cccc------------ccccccEEEEccc
Confidence            7653            3367999999877

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=9.1e-06  Score=66.11  Aligned_cols=90  Identities=14%  Similarity=0.175  Sum_probs=67.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ++++|+|+|||.|.=++.+|-.  ..+++.+|.+..-+...+......  .|+++++++++++..             ..
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~-------------~~  131 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-------------EP  131 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-------------CS
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc-------------cc
Confidence            5679999999999988888864  679999999999999888776654  499999999998742             25


Q ss_pred             CccEEEEc--CCCcccHHHHHHhccCCCC
Q 023482          217 GFAKVVAN--IPFNISTDVIKQLLPMGDI  243 (281)
Q Consensus       217 ~~d~Vi~n--~P~~~~~~~~~~ll~~~~~  243 (281)
                      .||+|++-  -|....-+...++++.++.
T Consensus       132 ~fD~V~sRA~~~~~~ll~~~~~~l~~~g~  160 (207)
T d1jsxa_         132 PFDGVISRAFASLNDMVSWCHHLPGEQGR  160 (207)
T ss_dssp             CEEEEECSCSSSHHHHHHHHTTSEEEEEE
T ss_pred             ccceehhhhhcCHHHHHHHHHHhcCCCcE
Confidence            78998874  2333333444455555543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.93  E-value=1.8e-05  Score=67.67  Aligned_cols=95  Identities=16%  Similarity=0.235  Sum_probs=70.7

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhc------CCCCeEEEEcCccccccccchhhHHHh
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~------~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ..+++||-||-|.|..+..+.+. . .+|+.||+|++.++.+++.++      ..++++++.+|+.+.-..         
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~---------  149 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN---------  149 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT---------
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhh---------
Confidence            45679999999999999999987 3 589999999999999998763      235999999998764211         


Q ss_pred             hcCCCCccEEEEcCC--Cccc--------HHHHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIP--FNIS--------TDVIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P--~~~~--------~~~~~~ll~~~~~~  244 (281)
                       .....||+||.+++  ....        -..+++.|+++|.+
T Consensus       150 -~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~  191 (290)
T d1xj5a_         150 -AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVV  191 (290)
T ss_dssp             -SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEE
T ss_pred             -ccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEE
Confidence             22357999998753  2211        13445677777765

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=2.4e-05  Score=66.66  Aligned_cols=94  Identities=15%  Similarity=0.233  Sum_probs=71.5

Q ss_pred             ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccc
Q 023482          123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK  198 (281)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~  198 (281)
                      +..+..........+.+.++.+|||+++|.|.=|..+++.  ...|+++|+++.-+...+.++++.+  ++.+...|...
T Consensus        84 ~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~  163 (284)
T d1sqga2          84 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP  163 (284)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred             EEeccccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeecccccc
Confidence            4445555556666788889999999999999999999876  3689999999999999999988775  45555555433


Q ss_pred             cccccchhhHHHhhcCCCCccEEEEcCCC
Q 023482          199 CHIRSHMLSLFERRKSSSGFAKVVANIPF  227 (281)
Q Consensus       199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~  227 (281)
                      ...           .....||.|+.++|=
T Consensus       164 ~~~-----------~~~~~fd~IL~DaPC  181 (284)
T d1sqga2         164 SQW-----------CGEQQFDRILLDAPC  181 (284)
T ss_dssp             HHH-----------HTTCCEEEEEEECCC
T ss_pred             chh-----------cccccccEEEEeccc
Confidence            221           234679999999874

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.72  E-value=9.2e-06  Score=67.83  Aligned_cols=83  Identities=16%  Similarity=0.117  Sum_probs=58.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc------------------------------------------CCEEEEEeCCHHHHH
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA------------------------------------------GATVLAIEKDQHMVG  177 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~------------------------------------------~~~v~gvD~s~~~l~  177 (281)
                      ..+..++|.-||+|++.+..+..                                          ...++|.|+++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            34457999999999998876531                                          024678999999998


Q ss_pred             HHH---HHhcCC---CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482          178 LVR---ERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI  229 (281)
Q Consensus       178 ~a~---~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~  229 (281)
                      .|+   +|....   ..+++.+.|+.+.....   +.    ..+....+||+||||..
T Consensus       129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~---~~----~~~~~~GlIVtNPPYGE  179 (249)
T d1o9ga_         129 AARRLRERLTAEGGALPCAIRTADVFDPRALS---AV----LAGSAPDVVLTDLPYGE  179 (249)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHH---HH----HTTCCCSEEEEECCGGG
T ss_pred             HHHHHHHHHHHcCCCceeeeeecchhccCcch---hc----cCCCCCCEEEeCCCccc
Confidence            884   455544   37899999987654211   11    23456799999999953

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.67  E-value=4.4e-05  Score=67.49  Aligned_cols=86  Identities=14%  Similarity=0.089  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCC-----------------CeEEEEcCcccccc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASID-----------------QLKVLQEDFVKCHI  201 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~-----------------~v~~~~gD~~~~~~  201 (281)
                      .+.+|||..||+|..++..+.. +. +|+++|+|+.+++.+++|++.++                 ++.+.+.|+..+..
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            5779999999999999977664 44 99999999999999999975331                 35566666654432


Q ss_pred             ccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhc
Q 023482          202 RSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL  238 (281)
Q Consensus       202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll  238 (281)
                                 .....||+|..+| |....+++...+
T Consensus       125 -----------~~~~~fDvIDiDP-fGs~~pfldsAi  149 (375)
T d2dula1         125 -----------ERHRYFHFIDLDP-FGSPMEFLDTAL  149 (375)
T ss_dssp             -----------HSTTCEEEEEECC-SSCCHHHHHHHH
T ss_pred             -----------hhcCcCCcccCCC-CCCcHHHHHHHH
Confidence                       3446799999985 888888887443

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.66  E-value=0.00015  Score=60.11  Aligned_cols=64  Identities=6%  Similarity=0.202  Sum_probs=47.2

Q ss_pred             HHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccc
Q 023482          130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (281)
Q Consensus       130 ~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~  198 (281)
                      ...+++... .....+|||||||+|.++..++++  +.+++.+|+ |..++    .....++++++.+|+.+
T Consensus        69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~----~~~~~~ri~~~~gd~~~  135 (244)
T d1fp1d2          69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE----NAPPLSGIEHVGGDMFA  135 (244)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT----TCCCCTTEEEEECCTTT
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh----ccCCCCCeEEecCCccc
Confidence            445555555 344579999999999999999987  569999997 33432    22233599999999875

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.61  E-value=0.0002  Score=57.20  Aligned_cols=41  Identities=22%  Similarity=0.172  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCccHH----HHHHHHc------CCEEEEEeCCHHHHHHHHH
Q 023482          141 EGDIVLEIGPGTGSL----TNVLLNA------GATVLAIEKDQHMVGLVRE  181 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~----t~~la~~------~~~v~gvD~s~~~l~~a~~  181 (281)
                      +.-+|+++|||+|.-    ++.+.+.      ..+|+|.|+|+.+++.|++
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            345899999999983    3333332      1379999999999999984

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.57  E-value=0.00011  Score=60.45  Aligned_cols=60  Identities=15%  Similarity=0.223  Sum_probs=53.4

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      ..+.++.+++++... .+|+.|||..||+|..+.+..+.+-+.+|+|++++.++.|++++.
T Consensus       196 ~kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            356688899998876 578899999999999998888889999999999999999999875

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.51  E-value=6.4e-05  Score=62.22  Aligned_cols=94  Identities=9%  Similarity=0.165  Sum_probs=68.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .+.+|+|||+|.|.=++.++-.  ..+++.+|.+..-+...+......  .|+.++++.++++....         ....
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~---------~~~~  140 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRK---------DVRE  140 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCT---------TTTT
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccc---------cccc
Confidence            4679999999999988888764  679999999999888887766543  49999999998875321         1236


Q ss_pred             CccEEEEc--CCCcccHHHHHHhccCCCC
Q 023482          217 GFAKVVAN--IPFNISTDVIKQLLPMGDI  243 (281)
Q Consensus       217 ~~d~Vi~n--~P~~~~~~~~~~ll~~~~~  243 (281)
                      .||+|++-  -+....-.....+++.++.
T Consensus       141 ~~D~v~sRAva~l~~ll~~~~~~l~~~g~  169 (239)
T d1xdza_         141 SYDIVTARAVARLSVLSELCLPLVKKNGL  169 (239)
T ss_dssp             CEEEEEEECCSCHHHHHHHHGGGEEEEEE
T ss_pred             cceEEEEhhhhCHHHHHHHHhhhcccCCE
Confidence            79999984  2333344445566665554

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00019  Score=56.75  Aligned_cols=75  Identities=19%  Similarity=0.312  Sum_probs=55.0

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       140 ~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .++.+|||+||+.|.++..+.+.   ...++++|+.+         .....++.++.+|+.+....+....    .....
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~---------~~~i~~~~~~~~d~~~~~~~~~~~~----~~~~~   87 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---------MDPIVGVDFLQGDFRDELVMKALLE----RVGDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---------CCCCTTEEEEESCTTSHHHHHHHHH----HHTTC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc---------ccccCCceEeecccccchhhhhhhh----hccCc
Confidence            47789999999999999998875   35899999865         2233589999999977443222111    13457


Q ss_pred             CccEEEEcCCC
Q 023482          217 GFAKVVANIPF  227 (281)
Q Consensus       217 ~~d~Vi~n~P~  227 (281)
                      .+|+|+++...
T Consensus        88 ~~DlVlSD~ap   98 (180)
T d1ej0a_          88 KVQVVMSDMAP   98 (180)
T ss_dssp             CEEEEEECCCC
T ss_pred             ceeEEEecccc
Confidence            89999998544

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.39  E-value=0.00018  Score=61.05  Aligned_cols=61  Identities=15%  Similarity=0.189  Sum_probs=53.8

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~  185 (281)
                      ..+..+.+++++... .+++.|||..||+|..+.+....|.+.+|+|++++.++.|++++..
T Consensus       234 ~kP~~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         234 RFPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CCCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             cCchHHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence            345688889988775 4788999999999999998888899999999999999999998874

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.34  E-value=0.00034  Score=57.89  Aligned_cols=73  Identities=14%  Similarity=0.280  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      ...+|+|||||+|.++..++++  +.+++.+|. ++.++.+    ...++++++.+|+.+-.               ..+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~~~~rv~~~~gD~f~~~---------------p~a  139 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----SGSNNLTYVGGDMFTSI---------------PNA  139 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----CCBTTEEEEECCTTTCC---------------CCC
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----cccCceEEEecCcccCC---------------CCC
Confidence            3468999999999999999987  679999998 4444322    23359999999997621               245


Q ss_pred             cEEEEc-CCCcccHHH
Q 023482          219 AKVVAN-IPFNISTDV  233 (281)
Q Consensus       219 d~Vi~n-~P~~~~~~~  233 (281)
                      |+++.. .-..|..+.
T Consensus       140 D~~~l~~vLHdw~d~~  155 (244)
T d1fp2a2         140 DAVLLKYILHNWTDKD  155 (244)
T ss_dssp             SEEEEESCGGGSCHHH
T ss_pred             cEEEEEeecccCChHH
Confidence            777764 444555543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.29  E-value=0.00058  Score=57.85  Aligned_cols=69  Identities=17%  Similarity=0.215  Sum_probs=56.5

Q ss_pred             EEEEEcCCccHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEE
Q 023482          144 IVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV  222 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi  222 (281)
                      +|+|+.||.|.+...+...|.+ +.++|+++.+.+..+.|+.    -.++++|+.+++..+           ....|+++
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~----~~~~~~Di~~~~~~~-----------~~~~dll~   66 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSDE-----------FPKCDGII   66 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC----SEEEESCTTTSCGGG-----------SCCCSEEE
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCCccCChhhCCHhH-----------cccccEEe
Confidence            6999999999999998888875 5599999999998888875    357889999886532           25689999


Q ss_pred             EcCCC
Q 023482          223 ANIPF  227 (281)
Q Consensus       223 ~n~P~  227 (281)
                      +.+|=
T Consensus        67 ~g~PC   71 (324)
T d1dcta_          67 GGPPC   71 (324)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            98774

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.25  E-value=0.00061  Score=56.20  Aligned_cols=63  Identities=13%  Similarity=0.208  Sum_probs=45.7

Q ss_pred             HHHHHHhcCCC-CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccc
Q 023482          131 DQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK  198 (281)
Q Consensus       131 ~~l~~~l~~~~-~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~  198 (281)
                      ..++....... ..+|+|||||+|.++..++++  +.+++.+|+-+. ++    .....++++++.+|+.+
T Consensus        70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~----~~~~~~r~~~~~~d~~~  135 (243)
T d1kyza2          70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE----DAPSYPGVEHVGGDMFV  135 (243)
T ss_dssp             HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT----TCCCCTTEEEEECCTTT
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh----hcccCCceEEecccccc
Confidence            34444444333 468999999999999999997  679999998543 22    22233589999999865

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.23  E-value=0.00036  Score=58.02  Aligned_cols=61  Identities=15%  Similarity=0.274  Sum_probs=53.9

Q ss_pred             cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC
Q 023482          124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS  185 (281)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~  185 (281)
                      ..+..+.+++++... .+|+.|||..||+|..+.+....+-+.+|+|+++..++.|++++..
T Consensus       191 ~kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         191 QKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             CCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence            356678889888775 5789999999999999988888899999999999999999998874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.20  E-value=0.0024  Score=49.04  Aligned_cols=106  Identities=17%  Similarity=0.150  Sum_probs=66.5

Q ss_pred             HHHHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHH
Q 023482          133 LAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      .+...+++++++||-+||| .|.++..+++. |++|+++|.+++-++.|++.-.   ...+ ..|-...... ...+.+.
T Consensus        18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga---~~~~-~~~~~~~~~~-~~~~~~~   92 (170)
T d1e3ja2          18 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA---DVTL-VVDPAKEEES-SIIERIR   92 (170)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC---SEEE-ECCTTTSCHH-HHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC---cEEE-eccccccccc-hhhhhhh
Confidence            3456678899999999998 67777777776 8899999999999999987532   2222 2222111111 0111111


Q ss_pred             hhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          211 RRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      . ..+..+|+||-...-........+++++++.+
T Consensus        93 ~-~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~i  125 (170)
T d1e3ja2          93 S-AIGDLPNVTIDCSGNEKCITIGINITRTGGTL  125 (170)
T ss_dssp             H-HSSSCCSEEEECSCCHHHHHHHHHHSCTTCEE
T ss_pred             c-ccccCCceeeecCCChHHHHHHHHHHhcCCce
Confidence            1 33567899988665443334445677777765

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.95  E-value=0.0017  Score=55.18  Aligned_cols=71  Identities=18%  Similarity=0.242  Sum_probs=57.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      .+-+|||+.||.|.+...|.+.|.+ +.++|+++.+++..+.|+...     .++|+.++...           ....+|
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-----~~~Di~~~~~~-----------~~~~~D   73 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----PEGDITQVNEK-----------TIPDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----CBSCGGGSCGG-----------GSCCCS
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-----CcCchhcCchh-----------hcceee
Confidence            4569999999999999999888874 567999999999999998632     36888887643           235689


Q ss_pred             EEEEcCCC
Q 023482          220 KVVANIPF  227 (281)
Q Consensus       220 ~Vi~n~P~  227 (281)
                      ++++.+|=
T Consensus        74 ll~ggpPC   81 (327)
T d2c7pa1          74 ILCAGFPC   81 (327)
T ss_dssp             EEEEECCC
T ss_pred             eeeccccc
Confidence            99998873

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00047  Score=59.01  Aligned_cols=74  Identities=18%  Similarity=0.241  Sum_probs=57.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHcCC--E-EEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          142 GDIVLEIGPGTGSLTNVLLNAGA--T-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~~~~--~-v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      +-+|+|+.||.|.+...|...|.  + +.++|+++.+++..+.|+.   +..++++|+.++...+         ......
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~---~~~~~~~di~~~~~~~---------~~~~~~   69 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---HTQLLAKTIEGITLEE---------FDRLSF   69 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---TSCEECSCGGGCCHHH---------HHHHCC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC---CCCcccCchhhCCHhH---------cCCCCc
Confidence            34799999999999988877764  3 6799999999999888875   5567889998876432         111357


Q ss_pred             cEEEEcCCC
Q 023482          219 AKVVANIPF  227 (281)
Q Consensus       219 d~Vi~n~P~  227 (281)
                      |++++.+|=
T Consensus        70 Dll~ggpPC   78 (343)
T d1g55a_          70 DMILMSPPC   78 (343)
T ss_dssp             SEEEECCC-
T ss_pred             cEEEeeccc
Confidence            999999883

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.72  E-value=0.0032  Score=48.94  Aligned_cols=102  Identities=19%  Similarity=0.206  Sum_probs=67.4

Q ss_pred             HHHHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHH
Q 023482          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      .++..+++++++||=+|||. |.++..+++. |+ +|+++|.+++-++.|++.-.    ..++  |..+-++    .+.+
T Consensus        19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa----~~~i--~~~~~~~----~~~v   88 (174)
T d1jqba2          19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA----TDIL--NYKNGHI----EDQV   88 (174)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC----SEEE--CGGGSCH----HHHH
T ss_pred             HHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc----cccc--cccchhH----HHHH
Confidence            35667888999999999996 7888888887 65 79999999999999986422    1222  2222221    2222


Q ss_pred             HhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      .....+..+|+||-...-........+++++++.+
T Consensus        89 ~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~i  123 (174)
T d1jqba2          89 MKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGII  123 (174)
T ss_dssp             HHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEE
T ss_pred             HHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEE
Confidence            22234456999998876554444445666666655

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.0046  Score=48.05  Aligned_cols=101  Identities=18%  Similarity=0.166  Sum_probs=61.8

Q ss_pred             hcCCCCCEEEEEcCC-ccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482          137 AAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       137 l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      ..+++|++||-+|+| .|.++..+++. |+ +|+++|.+++.++.+++.-.   . .++  |..+.+..+ ..+.+....
T Consensus        24 ~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa---~-~vi--~~~~~~~~~-~~~~i~~~~   96 (182)
T d1vj0a2          24 PESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA---D-LTL--NRRETSVEE-RRKAIMDIT   96 (182)
T ss_dssp             SSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC---S-EEE--ETTTSCHHH-HHHHHHHHT
T ss_pred             hCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccc---e-EEE--eccccchHH-HHHHHHHhh
Confidence            456789999999998 47777788876 76 89999999999999976421   1 222  222211111 011121113


Q ss_pred             CCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          214 SSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       214 ~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      .+..+|+||-...-........+++++++.+
T Consensus        97 ~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~i  127 (182)
T d1vj0a2          97 HGRGADFILEATGDSRALLEGSELLRRGGFY  127 (182)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHEEEEEEE
T ss_pred             CCCCceEEeecCCchhHHHHHHHHhcCCCEE
Confidence            4456999997665433334445666666654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.32  E-value=0.007  Score=50.12  Aligned_cols=83  Identities=13%  Similarity=0.167  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=-|++.|.   ++..|++.|++|+.+|.+++.++.+.+.+...+.+.++.+|+.+..--...++.+.  ...+.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   82 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTI--AKHGK   82 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence            57889999987765   34555566999999999999999888888766788999999887543333344332  23467


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        83 iD~lVnnA   90 (268)
T d2bgka1          83 LDIMFGNV   90 (268)
T ss_dssp             CCEEEECC
T ss_pred             cceecccc
Confidence            89999763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.15  E-value=0.012  Score=46.48  Aligned_cols=49  Identities=22%  Similarity=0.300  Sum_probs=40.9

Q ss_pred             HHHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHH
Q 023482          134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (281)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~  182 (281)
                      ++..+++++++||-+|||. |.++..+++. ++ +|+++|.++..++.|++.
T Consensus        18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            4567888999999999997 6677777765 54 999999999999999875

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.011  Score=48.22  Aligned_cols=83  Identities=13%  Similarity=0.161  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      .|+.+|=-|++.|.   ++..+++.|++|+.+|.+++-++...+.+... +++..+.+|+.+..--+..++.+.  ...+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~--~~~g   83 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVK--AEIG   83 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HHcC
Confidence            57889988988876   66667777999999999999998887777644 489999999988754444444443  3457


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        84 ~idilinna   92 (244)
T d1yb1a_          84 DVSILVNNA   92 (244)
T ss_dssp             CCSEEEECC
T ss_pred             CCceeEeec
Confidence            789999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.005  Score=47.27  Aligned_cols=49  Identities=20%  Similarity=0.242  Sum_probs=41.4

Q ss_pred             HHHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH
Q 023482          134 AAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (281)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~  182 (281)
                      +...+++++++||-+|+| .|.++..+++. |++|+++|.+++.++.|++.
T Consensus        20 l~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          20 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             HHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence            445677899999999998 77777777766 89999999999999998875

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.97  E-value=0.011  Score=48.54  Aligned_cols=83  Identities=17%  Similarity=0.266  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=-|.+.|.   ++..|++.|++|+.+|.+++.++.+.+.+...+++.++.+|+.+...-+..++.+.  ...+.
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~G~   82 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATE--KAFGP   82 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHH--HHHSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHH--HHhCC
Confidence            57888888876664   45555667999999999999999888887765689999999988654444444442  33467


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        83 iDiLVnnA   90 (251)
T d1zk4a1          83 VSTLVNNA   90 (251)
T ss_dssp             CCEEEECC
T ss_pred             ceEEEecc
Confidence            89999874

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.92  E-value=0.018  Score=47.25  Aligned_cols=84  Identities=15%  Similarity=0.185  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +++++|=.|++.|.   ++..+++.|++|+.++.+++-++.+.+.+... .++.++.+|+.+...-+..++.+.. ...+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~~~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH-VFDG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH-HTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHH-HhCC
Confidence            67899999987763   45566667999999999999888887777654 3888999999886544444444432 2335


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|+++.|.
T Consensus        84 ~idilinna   92 (258)
T d1ae1a_          84 KLNILVNNA   92 (258)
T ss_dssp             CCCEEEECC
T ss_pred             CcEEEeccc
Confidence            688888764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.88  E-value=0.015  Score=47.61  Aligned_cols=84  Identities=19%  Similarity=0.243  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +++.+|=-|.+.|.   ++..|++.|++|+.+|.+++.++.+.+.++..+ ++..+.+|+.+..--...++.+.  ...+
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~--~~~g   86 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKIL--TEHK   86 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH--HHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HhcC
Confidence            57788888976663   344444558899999999999998888877654 89999999987554444444432  3457


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|++|.|..
T Consensus        87 ~iDilvnnag   96 (251)
T d2c07a1          87 NVDILVNNAG   96 (251)
T ss_dssp             CCCEEEECCC
T ss_pred             Cceeeeeccc
Confidence            8999998753

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.013  Score=48.08  Aligned_cols=84  Identities=17%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      +++.+|=-|++.|.   ++..|++.|++|+.++.+++.++.+.+.+...   +++.++.+|+.+-.-.+..+|.+.  ..
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~--~~   86 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR--SQ   86 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH--Hh
Confidence            67899999988775   45555666999999999999988887766543   378889999987544334444443  33


Q ss_pred             CCCccEEEEcCC
Q 023482          215 SSGFAKVVANIP  226 (281)
Q Consensus       215 ~~~~d~Vi~n~P  226 (281)
                      .+..|++|.|..
T Consensus        87 ~g~iD~lVnnAg   98 (257)
T d1xg5a_          87 HSGVDICINNAG   98 (257)
T ss_dssp             HCCCSEEEECCC
T ss_pred             cCCCCEEEeccc
Confidence            477899998753

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=95.74  E-value=0.032  Score=48.24  Aligned_cols=81  Identities=23%  Similarity=0.350  Sum_probs=51.6

Q ss_pred             ccCc--cccCCHHHHHH--------HHHH---hcCCCCCEEEEEcCCccHHHHHHHHc---------CCEEEEEeCCHHH
Q 023482          118 SLGQ--HYMLNSEINDQ--------LAAA---AAVQEGDIVLEIGPGTGSLTNVLLNA---------GATVLAIEKDQHM  175 (281)
Q Consensus       118 ~~g~--~~~~~~~~~~~--------l~~~---l~~~~~~~VLDiGcG~G~~t~~la~~---------~~~v~gvD~s~~~  175 (281)
                      .+|.  +|+|.+++-..        +...   +.....-.|+|+|+|.|.++..+...         ..+++-+|.++.+
T Consensus        43 ~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L  122 (365)
T d1zkda1          43 PLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL  122 (365)
T ss_dssp             -------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred             CCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhH
Confidence            4444  69998876322        2222   23323457999999999998877652         2379999999998


Q ss_pred             HHHHHHHhcCCCCeEEEEcCcccc
Q 023482          176 VGLVRERFASIDQLKVLQEDFVKC  199 (281)
Q Consensus       176 l~~a~~~~~~~~~v~~~~gD~~~~  199 (281)
                      .+.-++++....+++++ .|..++
T Consensus       123 ~~~Q~~~l~~~~~i~w~-~~~~~~  145 (365)
T d1zkda1         123 RQKQQTLLAGIRNIHWH-DSFEDV  145 (365)
T ss_dssp             HHHHHHHSTTCSSEEEE-SSGGGS
T ss_pred             HHHHHHHhcccccceec-cChhhc
Confidence            88888777755566543 344443

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.74  E-value=0.019  Score=47.20  Aligned_cols=83  Identities=10%  Similarity=0.115  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +++++|=-|.+.|.   ++..|++.|++|+.+|.+++.++.+.+.+...+ ++..+.+|+.+..--...++.+.  ...+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g   81 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVV--RDFG   81 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence            57889988977664   556666779999999999999998888877654 89999999987543333333332  2346


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        82 ~iDilVnna   90 (260)
T d1zema1          82 KIDFLFNNA   90 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CCCeehhhh
Confidence            789999763

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.63  E-value=0.024  Score=46.56  Aligned_cols=84  Identities=18%  Similarity=0.209  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +++++|=-|.+.|.   ++..|++.|++|+.+|.+++-++.+.+.+... .++.++.+|+.+..--+..++.+.. ...+
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~-~~~~   85 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN-HFHG   85 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH-HTTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHH-HhCC
Confidence            57899998987664   45666667999999999999998887777654 4788899998775433333333321 2234


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        86 ~idilvnnA   94 (259)
T d2ae2a_          86 KLNILVNNA   94 (259)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEECC
Confidence            689999874

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.58  E-value=0.025  Score=46.25  Aligned_cols=82  Identities=11%  Similarity=0.116  Sum_probs=59.1

Q ss_pred             CCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ++.+|=-|.+.|.   ++..|++.|++|+.+|.+++.++.+.+.+...+ ++.++.+|+.+..--+..++.+.  ...+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~--~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVV--ERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH--HHhCC
Confidence            4566777876554   445566679999999999999988877776544 89999999987654444444432  34578


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|-
T Consensus        80 iDilVnnA   87 (257)
T d2rhca1          80 VDVLVNNA   87 (257)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEecc
Confidence            89999873

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.057  Score=40.98  Aligned_cols=104  Identities=19%  Similarity=0.115  Sum_probs=63.7

Q ss_pred             HHHHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHH
Q 023482          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      .++..++.++++||=+|+|. |.++..+++. |+ +|+++|.++.-++.|++.-.   . .++..+-.+...   ....+
T Consensus        18 a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga---~-~~~~~~~~~~~~---~~~~~   90 (171)
T d1pl8a2          18 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA---D-LVLQISKESPQE---IARKV   90 (171)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC---S-EEEECSSCCHHH---HHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCC---c-cccccccccccc---ccccc
Confidence            34566788999999999985 4455555554 76 89999999999999986422   1 222222111110   01111


Q ss_pred             HhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      .. ..+..+|+||....-........+++++++.+
T Consensus        91 ~~-~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~i  124 (171)
T d1pl8a2          91 EG-QLGCKPEVTIECTGAEASIQAGIYATRSGGTL  124 (171)
T ss_dssp             HH-HHTSCCSEEEECSCCHHHHHHHHHHSCTTCEE
T ss_pred             cc-cCCCCceEEEeccCCchhHHHHHHHhcCCCEE
Confidence            11 23457899998776554455556777777655

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.42  E-value=0.034  Score=40.53  Aligned_cols=70  Identities=14%  Similarity=0.176  Sum_probs=47.8

Q ss_pred             EEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          144 IVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      +|+=+|  .|.++..+++    .|.+|+.+|.|++.++.++..+    ++.+++||+.+...-.       . ......|
T Consensus         2 ~IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~----~~~vi~Gd~~~~~~l~-------~-~~i~~a~   67 (132)
T d1lssa_           2 YIIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLE-------D-AGIEDAD   67 (132)
T ss_dssp             EEEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHH-------H-TTTTTCS
T ss_pred             EEEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh----hhhhccCcccchhhhh-------h-cChhhhh
Confidence            345544  5777776665    3789999999999998877653    4679999998754321       1 2235678


Q ss_pred             EEEEcCCC
Q 023482          220 KVVANIPF  227 (281)
Q Consensus       220 ~Vi~n~P~  227 (281)
                      .+++-.+-
T Consensus        68 ~vv~~t~~   75 (132)
T d1lssa_          68 MYIAVTGK   75 (132)
T ss_dssp             EEEECCSC
T ss_pred             hhcccCCc
Confidence            88875544

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.40  E-value=0.029  Score=46.00  Aligned_cols=85  Identities=12%  Similarity=0.112  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +++++|=-|++.|.   ++..+++.|++|+.++.+++-++.+.+.+... .++..+.+|+.+..-....++.+.. ...+
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~~g   85 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS-MFGG   85 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH-HHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHH-HhCC
Confidence            57899999988775   55666677999999999999988887776544 4899999998775433333333321 1236


Q ss_pred             CccEEEEcCC
Q 023482          217 GFAKVVANIP  226 (281)
Q Consensus       217 ~~d~Vi~n~P  226 (281)
                      ..|++|.|..
T Consensus        86 ~idilvnnAG   95 (259)
T d1xq1a_          86 KLDILINNLG   95 (259)
T ss_dssp             CCSEEEEECC
T ss_pred             Cccccccccc
Confidence            7899998754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.29  E-value=0.042  Score=42.25  Aligned_cols=103  Identities=14%  Similarity=0.104  Sum_probs=63.9

Q ss_pred             HHHHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHH
Q 023482          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      ++....++++++||=+|||. |.++..+++. |+ .|+++|.+++-++.|++.-.    ..++...-.+..    .....
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga----~~~i~~~~~~~~----~~~~~   91 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA----TDCLNPRELDKP----VQDVI   91 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSC----HHHHH
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC----CcccCCccchhh----hhhhH
Confidence            34456678999999999997 8888888886 65 89999999999988887422    122221111111    11111


Q ss_pred             HhhcCCCCccEEEEcCCCcccHHHHHHhccCC-CCc
Q 023482          210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMG-DIF  244 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~-~~~  244 (281)
                      .. ..+..+|++|....-........+++.++ +.+
T Consensus        92 ~~-~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~  126 (174)
T d1e3ia2          92 TE-LTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSC  126 (174)
T ss_dssp             HH-HHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEE
T ss_pred             hh-hhcCCCcEEEEecccchHHHHHHHHhhcCCeEE
Confidence            11 34567899998765444444444555553 544

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.02  Score=47.00  Aligned_cols=83  Identities=17%  Similarity=0.213  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +++++|=-|.+.|.   ++..+++.|++|+.++.+++.++.+.+.+... +++.++.+|+.+..--+..++.+.  ...+
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~--~~~g   87 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAI--SKLG   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence            57888988876654   34455556899999999999998888777654 488999999987543333333332  2336


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        88 ~iDilvnnA   96 (255)
T d1fmca_          88 KVDILVNNA   96 (255)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEeeeCC
Confidence            789999874

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.24  E-value=0.025  Score=46.72  Aligned_cols=82  Identities=15%  Similarity=0.167  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~----~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      +++++|=-|++.|.   ++..|++.|++|+.+|.+++-++.+.+.+...    .++..+.+|+.+..--+..++.+.  .
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~--~   81 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL--K   81 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH--H
Confidence            57888988977764   55666667999999999999999888877654    268999999987554334444332  2


Q ss_pred             CCCCccEEEEc
Q 023482          214 SSSGFAKVVAN  224 (281)
Q Consensus       214 ~~~~~d~Vi~n  224 (281)
                      ..+..|++|.|
T Consensus        82 ~~g~iDilvnn   92 (272)
T d1xkqa_          82 QFGKIDVLVNN   92 (272)
T ss_dssp             HHSCCCEEEEC
T ss_pred             HhCCceEEEeC
Confidence            34678999987

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.16  E-value=0.038  Score=45.10  Aligned_cols=80  Identities=18%  Similarity=0.224  Sum_probs=56.9

Q ss_pred             EEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       144 ~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      .+|=-|++.|.   ++..+++.|++|+.+|++++.++.+.+.+... +++..+.+|+.+..--...++.+.  ...+..|
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~iD   80 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQAR--KTLGGFD   80 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HHTTCCC
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HHhCCcc
Confidence            34666766554   44555667999999999999998887777654 489999999987654444444432  3457899


Q ss_pred             EEEEcC
Q 023482          220 KVVANI  225 (281)
Q Consensus       220 ~Vi~n~  225 (281)
                      ++|.|-
T Consensus        81 ilVnnA   86 (255)
T d1gega_          81 VIVNNA   86 (255)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            999873

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.034  Score=45.42  Aligned_cols=80  Identities=20%  Similarity=0.258  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +|+++|=-|++.|.   ++..|++.|++|+.+|.+++.++.+.+...   ++.++.+|+.+..--+..++.+.  ...+.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~---~~~~~~~Dvs~~~~v~~~~~~~~--~~~g~   79 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP---GAVFILCDVTQEDDVKTLVSETI--RRFGR   79 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT---TEEEEECCTTSHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC---CCeEEEccCCCHHHHHHHHHHHH--HhcCC
Confidence            57899999987764   455566679999999999998887776554   78899999987554333333332  23367


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        80 iDilVnnA   87 (250)
T d1ydea1          80 LDCVVNNA   87 (250)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEecc
Confidence            89999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.046  Score=41.44  Aligned_cols=96  Identities=18%  Similarity=0.139  Sum_probs=60.1

Q ss_pred             HHHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          134 AAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      +...+++++++||=+|+| .|.++..+++. |++++++|.+++-.+.+++.-.    -.++..+-.+.        ..  
T Consensus        23 l~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa----d~~i~~~~~~~--------~~--   88 (168)
T d1uufa2          23 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA----DEVVNSRNADE--------MA--   88 (168)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC----SEEEETTCHHH--------HH--
T ss_pred             HHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC----cEEEECchhhH--------HH--
Confidence            456678899999999987 46677777775 8899999999998888875422    12332111110        00  


Q ss_pred             hcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                       .....+|.+|....-.........++.+++.+
T Consensus        89 -~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~i  120 (168)
T d1uufa2          89 -AHLKSFDFILNTVAAPHNLDDFTTLLKRDGTM  120 (168)
T ss_dssp             -TTTTCEEEEEECCSSCCCHHHHHTTEEEEEEE
T ss_pred             -HhcCCCceeeeeeecchhHHHHHHHHhcCCEE
Confidence             23357899887654333333344566555554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.021  Score=43.73  Aligned_cols=99  Identities=19%  Similarity=0.257  Sum_probs=60.2

Q ss_pred             HHhcCCCCCEEEEEcC--CccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          135 AAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       135 ~~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      ...+++++++||-.|+  |.|..+..+++. |++|++++.+++-.+.+++.-.    -.++  |..+.++.    +.+..
T Consensus        22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga----~~vi--~~~~~~~~----~~i~~   91 (174)
T d1yb5a2          22 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA----HEVF--NHREVNYI----DKIKK   91 (174)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----SEEE--ETTSTTHH----HHHHH
T ss_pred             HHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCc----cccc--ccccccHH----HHhhh
Confidence            4456778999999996  467778888876 8899999999988888876321    1232  22222221    22222


Q ss_pred             hcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ...+..+|+|+...- ....+...+++++++.+
T Consensus        92 ~t~~~g~d~v~d~~g-~~~~~~~~~~l~~~G~i  123 (174)
T d1yb5a2          92 YVGEKGIDIIIEMLA-NVNLSKDLSLLSHGGRV  123 (174)
T ss_dssp             HHCTTCEEEEEESCH-HHHHHHHHHHEEEEEEE
T ss_pred             hhccCCceEEeeccc-HHHHHHHHhccCCCCEE
Confidence            234567999997643 21222233555555544

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.04  Score=44.93  Aligned_cols=84  Identities=15%  Similarity=0.166  Sum_probs=59.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      .|+++|=-|++.|.   ++..+++.|++|+.+|.+++-++.+.+.+...   .++.++.+|+.+..--...++.+.  ..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~   79 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVV--DH   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHH--HH
Confidence            47788888977664   44555566999999999999988887766532   278899999988543333343332  23


Q ss_pred             CCCccEEEEcCC
Q 023482          215 SSGFAKVVANIP  226 (281)
Q Consensus       215 ~~~~d~Vi~n~P  226 (281)
                      .+..|++|.|--
T Consensus        80 ~G~iDilVnnAg   91 (254)
T d2gdza1          80 FGRLDILVNNAG   91 (254)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCcCeeccccc
Confidence            467899998743

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.05  E-value=0.072  Score=40.62  Aligned_cols=101  Identities=13%  Similarity=0.097  Sum_probs=63.0

Q ss_pred             HHHHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHH
Q 023482          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      ++...+++++++||=+|||. |.++..+++. ++ .|+++|.++.-++.+++.-.    ..++..+-.+      ..+.+
T Consensus        20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga----~~~i~~~~~~------~~~~i   89 (174)
T d1f8fa2          20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA----THVINSKTQD------PVAAI   89 (174)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC----SEEEETTTSC------HHHHH
T ss_pred             HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC----eEEEeCCCcC------HHHHH
Confidence            34556778999999999984 3355555554 55 78899999999999886421    2344322111      11222


Q ss_pred             HhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      .. ..++.+|+||-...-........+++++++.+
T Consensus        90 ~~-~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i  123 (174)
T d1f8fa2          90 KE-ITDGGVNFALESTGSPEILKQGVDALGILGKI  123 (174)
T ss_dssp             HH-HTTSCEEEEEECSCCHHHHHHHHHTEEEEEEE
T ss_pred             HH-HcCCCCcEEEEcCCcHHHHHHHHhcccCceEE
Confidence            22 23467999998776554445555666666654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.01  E-value=0.026  Score=46.71  Aligned_cols=82  Identities=12%  Similarity=0.230  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~----~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      +|+++|=-|++.|.   ++..|++.|++|+.+|.+++-++.+.+.+...    .++..+.+|+.+..--+..++.+.  .
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~   80 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL--A   80 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH--H
Confidence            57888988987774   55566667999999999999998887776543    278999999988654444444332  2


Q ss_pred             CCCCccEEEEc
Q 023482          214 SSSGFAKVVAN  224 (281)
Q Consensus       214 ~~~~~d~Vi~n  224 (281)
                      ..+..|++|.|
T Consensus        81 ~~G~iDilVnn   91 (274)
T d1xhla_          81 KFGKIDILVNN   91 (274)
T ss_dssp             HHSCCCEEEEC
T ss_pred             HcCCceEEEee
Confidence            34678999987

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.042  Score=44.53  Aligned_cols=76  Identities=21%  Similarity=0.250  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .|+++|=-|.+.|.   ++..+++.|++|+.+|.+++-++.+.+...   ++..+..|+.+...-+   ..+   ...+.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~---~~~~~~~Dv~d~~~v~---~~~---~~~g~   76 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP---GIEPVCVDLGDWEATE---RAL---GSVGP   76 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST---TCEEEECCTTCHHHHH---HHH---TTCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---CCeEEEEeCCCHHHHH---HHH---HHhCC
Confidence            68899999988773   556666679999999999998887766554   6788889987643211   122   34578


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|-
T Consensus        77 iDilVnnA   84 (244)
T d1pr9a_          77 VDLLVNNA   84 (244)
T ss_dssp             CCEEEECC
T ss_pred             ceEEEecc
Confidence            99999874

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.85  E-value=0.03  Score=45.94  Aligned_cols=83  Identities=13%  Similarity=0.161  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcCccccccccchhhHHHhhc
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~----~~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      +++.+|=-|++.|.   ++..|++.|++|+.+|.+++.++.+.+.+...    .++.++.+|+.+..--+..++.+.  .
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~--~   81 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL--G   81 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHH--H
Confidence            57788888877665   44555667999999999999998887766433    268999999987654444444332  3


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|++|.|.
T Consensus        82 ~~g~iDilvnnA   93 (264)
T d1spxa_          82 KFGKLDILVNNA   93 (264)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HhCCCCEeeccc
Confidence            347789999873

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.78  E-value=0.044  Score=44.50  Aligned_cols=81  Identities=16%  Similarity=0.165  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=-|++.|.   ++..|++.|++|+.+|++++-++.+.+.+.  +++.++.+|+.+..--...++.+.  ...+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   80 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA--DAARYVHLDVTQPAQWKAAVDTAV--TAFGG   80 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG--GGEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh--CcceEEEeecCCHHHHHHHHHHHH--HHhCC
Confidence            57889999988774   556666779999999999998888777665  478889999887543333444432  23367


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        81 idilinnA   88 (244)
T d1nffa_          81 LHVLVNNA   88 (244)
T ss_dssp             CCEEEECC
T ss_pred             CeEEEECC
Confidence            89999874

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.76  E-value=0.037  Score=45.33  Aligned_cols=82  Identities=12%  Similarity=0.093  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      +++++|=-|.+.|.   ++..|++.|++|+.+|.+++.++.+.+.+..   ..++..+.+|+.+..--+..++.+.  ..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~--~~   80 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT--ER   80 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHH--HH
Confidence            57788888987775   5666777799999999999988877665532   2378899999987654333444332  33


Q ss_pred             CCCccEEEEc
Q 023482          215 SSGFAKVVAN  224 (281)
Q Consensus       215 ~~~~d~Vi~n  224 (281)
                      .+..|++|.|
T Consensus        81 ~G~iDiLVnn   90 (258)
T d1iy8a_          81 FGRIDGFFNN   90 (258)
T ss_dssp             HSCCSEEEEC
T ss_pred             hCCCCEEEEC
Confidence            4678999986

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.55  E-value=0.05  Score=41.00  Aligned_cols=50  Identities=26%  Similarity=0.275  Sum_probs=40.1

Q ss_pred             HHHHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH
Q 023482          133 LAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~  182 (281)
                      .+...+++++++||=+|+| .|.++..+++. |++|+++|.+++-++.+++.
T Consensus        19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence            3456778899999999987 45566666665 78999999999999998864

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.061  Score=43.52  Aligned_cols=81  Identities=19%  Similarity=0.215  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=-|.+.|.   ++..+++.|++|+.+|.+++.++.+.+.+.  .++..+.+|+.+..-.+..++.+.  ...+.
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   78 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG--ANGKGLMLNVTDPASIESVLEKIR--AEFGE   78 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHH--HHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC--CCCcEEEEEecCHHHhhhhhhhhh--cccCC
Confidence            57788888877664   455556679999999999999888877665  367888999877544334444432  34578


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        79 iDilVnnA   86 (243)
T d1q7ba_          79 VDILVNNA   86 (243)
T ss_dssp             CSEEEECC
T ss_pred             cceehhhh
Confidence            89999873

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.46  E-value=0.051  Score=44.38  Aligned_cols=81  Identities=15%  Similarity=0.138  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=-|.+.|.   ++..+++.|++|+.+|++++-++.+.+.+.  +++.++.+|+.+..--+..++.+.  ...+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   79 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG--DAARYQHLDVTIEEDWQRVVAYAR--EEFGS   79 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG--GGEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CceEEEEcccCCHHHHHHHHHHHH--HHcCC
Confidence            57889999988774   556666779999999999988777665543  478999999987544333444332  23367


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        80 iDilVnnA   87 (254)
T d1hdca_          80 VDGLVNNA   87 (254)
T ss_dssp             CCEEEECC
T ss_pred             ccEEEecC
Confidence            89999874

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.46  E-value=0.045  Score=44.64  Aligned_cols=81  Identities=15%  Similarity=0.248  Sum_probs=58.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=-|.+.|.   ++..|++.|++|+..|.+++.++.+.+.+.  ++..++.+|+.+....+..++.+.  ...+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g~   80 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG--ERSMFVRHDVSSEADWTLVMAAVQ--RRLGT   80 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC--TTEEEECCCTTCHHHHHHHHHHHH--HHHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CCeEEEEeecCCHHHHHHHHHHHH--HHhCC
Confidence            57889988877663   455566679999999999999888777664  477888999887554444444443  23467


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        81 iDilVnnA   88 (253)
T d1hxha_          81 LNVLVNNA   88 (253)
T ss_dssp             CCEEEECC
T ss_pred             CCeEEecc
Confidence            89999874

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.45  E-value=0.05  Score=44.39  Aligned_cols=81  Identities=12%  Similarity=0.142  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=-|.+.|.   ++..|++.|++|+.+|.+++.++.+.+.+.  +++..+.+|+.+..--...++.+.  ...+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~--~~~~~~~~Dvt~~~~v~~~~~~~~--~~~g~   79 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG--PAACAIALDVTDQASIDRCVAELL--DRWGS   79 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CceEEEEeeCCCHHHHHHHHHHHH--HHhCC
Confidence            57788999987764   455666679999999999998887777664  478899999987554333444432  23467


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        80 iDilVnnA   87 (256)
T d1k2wa_          80 IDILVNNA   87 (256)
T ss_dssp             CCEEEECC
T ss_pred             ccEEEeec
Confidence            89999874

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.30  E-value=0.073  Score=43.01  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .|+++|=-|.+.|.   ++..|++.|++|+.+|.+++-++.+.+...   ++..+.+|+.+...-+   ..+   ...+.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~---~~~~~~~Dv~~~~~v~---~~~---~~~g~   74 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP---GIEPVCVDLGDWDATE---KAL---GGIGP   74 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST---TCEEEECCTTCHHHHH---HHH---TTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC---CCeEEEEeCCCHHHHH---HHH---HHcCC
Confidence            57889988987664   455566679999999999988777666543   6788889987643211   122   44578


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|-
T Consensus        75 iDilVnnA   82 (242)
T d1cyda_          75 VDLLVNNA   82 (242)
T ss_dssp             CSEEEECC
T ss_pred             CeEEEECC
Confidence            99999873

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.24  E-value=0.058  Score=43.89  Aligned_cols=83  Identities=14%  Similarity=0.226  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhc-CC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~-~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++++|=-|.+.|.   ++..+++.|++|+.+|.+++-++.+.+.+. .. .++..+.+|+.+..--+..++.+.  ...
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   81 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK--EKF   81 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence            57889999987764   555666779999999999988877665543 22 378889999987544333444432  234


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        82 g~iDiLVnnA   91 (251)
T d1vl8a_          82 GKLDTVVNAA   91 (251)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            6789999873

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.01  E-value=0.077  Score=42.85  Aligned_cols=78  Identities=14%  Similarity=0.093  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=-|.+.|.   ++..|++.|++|+.+|.+++.++.+.+.+    +++.+.+|+.+..--+..++.+.  ...+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   77 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV----GAHPVVMDVADPASVERGFAEAL--AHLGR   77 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----TCEEEECCTTCHHHHHHHHHHHH--HHHSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----CCeEEEEecCCHHHHHHHHHHHH--HhcCC
Confidence            57889999987764   44555666999999999998888776544    56788899887544333444332  23367


Q ss_pred             ccEEEEc
Q 023482          218 FAKVVAN  224 (281)
Q Consensus       218 ~d~Vi~n  224 (281)
                      .|++|.|
T Consensus        78 iDilVnn   84 (242)
T d1ulsa_          78 LDGVVHY   84 (242)
T ss_dssp             CCEEEEC
T ss_pred             ceEEEEC
Confidence            8999986

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.95  E-value=0.07  Score=40.81  Aligned_cols=84  Identities=14%  Similarity=0.279  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          141 EGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       141 ~~~~VLDiGcG~-G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      ++.+|+=||+|. |..++..|.. |++|+.+|.+++.+++.+..+..  +++....+-..+.      +.+      ...
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~--~~~~~~~~~~~l~------~~~------~~a   96 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS--RVELLYSNSAEIE------TAV------AEA   96 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHH------HHH------HTC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc--cceeehhhhhhHH------Hhh------ccC
Confidence            467999999995 6666766665 89999999999999998887763  5566555543332      111      457


Q ss_pred             cEEEEc-------CCCcccHHHHHHhc
Q 023482          219 AKVVAN-------IPFNISTDVIKQLL  238 (281)
Q Consensus       219 d~Vi~n-------~P~~~~~~~~~~ll  238 (281)
                      |+||..       .|.-+..+.++.+.
T Consensus        97 DivI~aalipG~~aP~lIt~~mv~~Mk  123 (168)
T d1pjca1          97 DLLIGAVLVPGRRAPILVPASLVEQMR  123 (168)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSC
T ss_pred             cEEEEeeecCCcccCeeecHHHHhhcC
Confidence            999984       35555556666554

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.91  E-value=0.069  Score=44.17  Aligned_cols=83  Identities=20%  Similarity=0.292  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~--~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +|+++|=-|++.|.   ++..|++.|++|+.+|.++.-++.+.+.+..  ..++.++.+|+.+..-....++.+.  ...
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~--~~~  101 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELI--KVA  101 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH--HHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhh--hhc
Confidence            67899999987762   5556666799999999999888776655432  2478899999887543322232222  345


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus       102 g~iDilvnnA  111 (294)
T d1w6ua_         102 GHPNIVINNA  111 (294)
T ss_dssp             CSCSEEEECC
T ss_pred             cccchhhhhh
Confidence            7789999874

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.12  Score=43.10  Aligned_cols=83  Identities=13%  Similarity=0.185  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHh
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      +++++|=-|++.|.   ++..|++.|++|+.+|.+++-++.+.+.+..      ..++..+.+|+.+..--...++.+. 
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~-   89 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL-   89 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH-
Confidence            68899999987765   3455566699999999999888777655431      1388999999987654333444332 


Q ss_pred             hcCCCCccEEEEcC
Q 023482          212 RKSSSGFAKVVANI  225 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~  225 (281)
                       ...+..|++|.|.
T Consensus        90 -~~~G~iDiLVnnA  102 (297)
T d1yxma1          90 -DTFGKINFLVNNG  102 (297)
T ss_dssp             -HHHSCCCEEEECC
T ss_pred             -HHhCCeEEEEeec
Confidence             2336789999874

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.68  E-value=0.2  Score=37.31  Aligned_cols=50  Identities=22%  Similarity=0.327  Sum_probs=38.6

Q ss_pred             HHHHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH
Q 023482          133 LAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~  182 (281)
                      .+...++.++++||=.|+|. |..+..+++. +++|+++|.+++-++.+++.
T Consensus        19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence            34556778999999999985 4444555554 78999999999999998774

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.66  E-value=0.13  Score=38.60  Aligned_cols=75  Identities=16%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             EEEEEcCC--ccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEE
Q 023482          144 IVLEIGPG--TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV  221 (281)
Q Consensus       144 ~VLDiGcG--~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~V  221 (281)
                      +|.=||+|  -+.++..+.+.|.+|++.|.+++.++.+++.-.    +.....+...+                ...|+|
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~----~~~~~~~~~~~----------------~~~DiI   61 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL----VDEAGQDLSLL----------------QTAKII   61 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS----CSEEESCGGGG----------------TTCSEE
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhc----cceeeeecccc----------------cccccc
Confidence            46667776  333555666678999999999999888776421    11111121111                456888


Q ss_pred             EEcCCCcccHHHHHHhc
Q 023482          222 VANIPFNISTDVIKQLL  238 (281)
Q Consensus       222 i~n~P~~~~~~~~~~ll  238 (281)
                      |...|......++..+.
T Consensus        62 ilavp~~~~~~vl~~l~   78 (165)
T d2f1ka2          62 FLCTPIQLILPTLEKLI   78 (165)
T ss_dssp             EECSCHHHHHHHHHHHG
T ss_pred             cccCcHhhhhhhhhhhh
Confidence            87777666666666554

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=93.65  E-value=0.11  Score=41.90  Aligned_cols=81  Identities=11%  Similarity=0.208  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=.|++.|.   ++..|++.|++|+..+.+.+.++...+.+.  +++.++++|+.+..--+..++.+.  ...+.
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dls~~~~i~~~~~~i~--~~~g~   79 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE--AEAIAVVADVSDPKAVEAVFAEAL--EEFGR   79 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC--SSEEEEECCTTSHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CceEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence            67889999988665   445555669999999999988776655443  488899999987543333333332  23367


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        80 iDiLinnA   87 (241)
T d2a4ka1          80 LHGVAHFA   87 (241)
T ss_dssp             CCEEEEGG
T ss_pred             ccEecccc
Confidence            89999873

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.65  E-value=0.062  Score=43.60  Aligned_cols=83  Identities=16%  Similarity=0.191  Sum_probs=59.9

Q ss_pred             CCCEEEEEcC----CccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGc----G~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++++|=-|+    |.|. ++..|++.|++|+..+.++...+.+.+.....++..++.+|+.+..--+..++.+.  ...
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~   84 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVK--EAF   84 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHH--Hhc
Confidence            5789999985    3554 66677778999999999988877777666555678889999987544333444332  234


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        85 g~iDilVnna   94 (256)
T d1ulua_          85 GGLDYLVHAI   94 (256)
T ss_dssp             SSEEEEEECC
T ss_pred             CCceEEEecc
Confidence            6789999774

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.63  E-value=0.09  Score=43.28  Aligned_cols=80  Identities=18%  Similarity=0.243  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=-|.+.|.   ++..|++.|++|+.+|.+++.++.+.+...  +++..+.+|+.+....+..++.+.  ...+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g~   79 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG--DNVLGIVGDVRSLEDQKQAASRCV--ARFGK   79 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CCeeEEecccccHHHHHHHHHHHH--HHhCC
Confidence            57889999977664   445555669999999999998877766554  378899999987654333333332  23467


Q ss_pred             ccEEEEc
Q 023482          218 FAKVVAN  224 (281)
Q Consensus       218 ~d~Vi~n  224 (281)
                      .|++|.|
T Consensus        80 idilvnn   86 (276)
T d1bdba_          80 IDTLIPN   86 (276)
T ss_dssp             CCEEECC
T ss_pred             ccccccc
Confidence            8988876

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.58  E-value=0.23  Score=37.73  Aligned_cols=50  Identities=20%  Similarity=0.174  Sum_probs=38.3

Q ss_pred             HHHHhcCCCCCEEEEEcCCccH-HHHHHHHc-CC-EEEEEeCCHHHHHHHHHH
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGS-LTNVLLNA-GA-TVLAIEKDQHMVGLVRER  182 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~-~t~~la~~-~~-~v~gvD~s~~~l~~a~~~  182 (281)
                      +++..+++++++||=+|||... ++..+++. ++ +|+++|.+++-++.|++.
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            3445677899999999998544 44555554 64 899999999999999874

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=93.56  E-value=0.031  Score=45.66  Aligned_cols=42  Identities=17%  Similarity=0.137  Sum_probs=32.8

Q ss_pred             HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeC
Q 023482          130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEK  171 (281)
Q Consensus       130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~  171 (281)
                      +.++.+...+.+..+|+|+|||.|..+..++..  ...|.|+++
T Consensus        55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            344555555667789999999999999999977  357888887

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=93.54  E-value=0.077  Score=43.42  Aligned_cols=83  Identities=16%  Similarity=0.169  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC-HHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s-~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++++|=-|.+.|.   ++..|++.|++|+.++.+ ++.++.+.+.+... .++..+.+|+.+..--+..++.+.  ...
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~--~~~   83 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAI--KEF   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHh
Confidence            57888988887774   455666679999999987 45666665555544 378889999987544333344332  234


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        84 G~iDiLVnnA   93 (261)
T d1geea_          84 GKLDVMINNA   93 (261)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEeeccc
Confidence            6789999874

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.47  E-value=0.075  Score=41.20  Aligned_cols=76  Identities=12%  Similarity=0.085  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      ++++||=.|.+.|.   ++..+++.|++|+.++.+++.++.+.+.+....++.+...|..+.....         ..-+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---------~~~~~   92 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRA---------EAVKG   92 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHH---------HHTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHH---------HHhcC
Confidence            68899999976554   4555666799999999999999888777664445566666665432110         11256


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|-
T Consensus        93 iDilin~A  100 (191)
T d1luaa1          93 AHFVFTAG  100 (191)
T ss_dssp             CSEEEECC
T ss_pred             cCeeeecC
Confidence            79999874

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.29  E-value=0.12  Score=39.17  Aligned_cols=97  Identities=9%  Similarity=0.070  Sum_probs=59.8

Q ss_pred             HhcCCCCCEEEEEcCC--ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482          136 AAAVQEGDIVLEIGPG--TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR  212 (281)
Q Consensus       136 ~l~~~~~~~VLDiGcG--~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~  212 (281)
                      ...++++++||=.|+|  .|..+..+++. |++|++++.+++-.+.+++.-.   . .++  |..+-++.    +.+..+
T Consensus        23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa---~-~vi--~~~~~d~~----~~v~~~   92 (179)
T d1qora2          23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA---W-QVI--NYREEDLV----ERLKEI   92 (179)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC---S-EEE--ETTTSCHH----HHHHHH
T ss_pred             HhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC---e-EEE--ECCCCCHH----HHHHHH
Confidence            3466789999998666  56677778776 8999999999999999886522   1 233  22222221    222222


Q ss_pred             cCCCCccEEEEcCCCcccHHHHHHhccCCCC
Q 023482          213 KSSSGFAKVVANIPFNISTDVIKQLLPMGDI  243 (281)
Q Consensus       213 ~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~  243 (281)
                      ..+..+|+|+-...-. .......++.+++.
T Consensus        93 t~g~g~d~v~d~~g~~-~~~~~~~~l~~~G~  122 (179)
T d1qora2          93 TGGKKVRVVYDSVGRD-TWERSLDCLQRRGL  122 (179)
T ss_dssp             TTTCCEEEEEECSCGG-GHHHHHHTEEEEEE
T ss_pred             hCCCCeEEEEeCccHH-HHHHHHHHHhcCCe
Confidence            3456789888765433 33334445544443

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.28  E-value=0.29  Score=36.91  Aligned_cols=99  Identities=15%  Similarity=0.108  Sum_probs=58.5

Q ss_pred             HHHHhcCCCCCEEEEEcCCccH-HHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCCCCeEEEE-cCccccccccchhhH
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGS-LTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQ-EDFVKCHIRSHMLSL  208 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~-~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~-gD~~~~~~~d~~~d~  208 (281)
                      +.+..+++++++||=+|+|.+. ++..++.. + .+|+++|.+++-.+.+++.-..    .++. .+..+      ..+.
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~----~~i~~~~~~~------~~~~   89 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT----ECVNPQDYKK------PIQE   89 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS----EEECGGGCSS------CHHH
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe----eEEecCCchh------HHHH
Confidence            3455678899999999997544 33444443 4 5999999999999998876331    2221 11111      1111


Q ss_pred             HHhhcCCCCccEEEEcCCCcccHHHHHHhccCC
Q 023482          209 FERRKSSSGFAKVVANIPFNISTDVIKQLLPMG  241 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~  241 (281)
                      +.....++.+|+||..............++..+
T Consensus        90 ~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~  122 (176)
T d2jhfa2          90 VLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEA  122 (176)
T ss_dssp             HHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTT
T ss_pred             HHHHHhcCCCCEEEecCCchhHHHHHHHHHhcC
Confidence            111144567999998776554444333444443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.26  E-value=0.094  Score=42.62  Aligned_cols=83  Identities=20%  Similarity=0.233  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCcc---HHHHHHHHcCCEEEEE-eCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAI-EKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G---~~t~~la~~~~~v~gv-D~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .|++||=-|.+.|   .++..|++.|++|+.. ..+++.++.+.+.+...+ ++..+.+|+.+..--+..++.+.  ...
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~--~~~   82 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAV--SHF   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHH--HHc
Confidence            6889998886665   3556666679988864 577887888777776554 89999999987543333333332  334


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        83 g~idilinna   92 (259)
T d1ja9a_          83 GGLDFVMSNS   92 (259)
T ss_dssp             SCEEEEECCC
T ss_pred             CCCcEEEecc
Confidence            6789999874

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.082  Score=43.33  Aligned_cols=82  Identities=17%  Similarity=0.149  Sum_probs=56.7

Q ss_pred             CCEE-EEEcCCccH---HHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          142 GDIV-LEIGPGTGS---LTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       142 ~~~V-LDiGcG~G~---~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      |++| |==|++.|.   ++..|++. +++|+..+.+++-++.+.+.+... .++.++.+|+.+..--...++.+.  ...
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~--~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLR--KEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHH--Hhc
Confidence            4455 444555544   34456665 789999999999998888777644 489999999988754444444443  234


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|-
T Consensus        80 g~iDiLVnNA   89 (275)
T d1wmaa1          80 GGLDVLVNNA   89 (275)
T ss_dssp             SSEEEEEECC
T ss_pred             CCcEEEEEcC
Confidence            6799999873

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.23  E-value=0.31  Score=36.51  Aligned_cols=102  Identities=11%  Similarity=0.085  Sum_probs=60.7

Q ss_pred             HHHhcCCCCCEEEEEcCC-ccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHH
Q 023482          134 AAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      .+..+++++++||=.||| .|.++..+++. + ..|+++|.+++-++.+++.=.    -.++..+-.+-+    ....+.
T Consensus        21 ~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa----~~~i~~~~~~~~----~~~~~~   92 (176)
T d2fzwa2          21 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA----TECINPQDFSKP----IQEVLI   92 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC----SEEECGGGCSSC----HHHHHH
T ss_pred             HHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC----cEEEeCCchhhH----HHHHHH
Confidence            345678899999999987 23345555554 5 489999999999998886432    123222111111    111111


Q ss_pred             hhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          211 RRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      . ..+..+|+||....-.........++..++..
T Consensus        93 ~-~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~  125 (176)
T d2fzwa2          93 E-MTDGGVDYSFECIGNVKVMRAALEACHKGWGV  125 (176)
T ss_dssp             H-HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCE
T ss_pred             H-HcCCCCcEeeecCCCHHHHHHHHHhhcCCcee
Confidence            1 34567999998765444445555666665543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.23  E-value=0.15  Score=38.36  Aligned_cols=102  Identities=18%  Similarity=0.246  Sum_probs=60.1

Q ss_pred             HHHHhcCCCCCEEEEEcC-C-ccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhH
Q 023482          133 LAAAAAVQEGDIVLEIGP-G-TGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGc-G-~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      .+...+++++++||=+|+ | .|.++..+++. + .+|+++|.+++-++.+++.-.   . .++..+-.+  +    .+.
T Consensus        19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga---~-~~i~~~~~~--~----~~~   88 (170)
T d1jvba2          19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA---D-YVINASMQD--P----LAE   88 (170)
T ss_dssp             HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC---S-EEEETTTSC--H----HHH
T ss_pred             HHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC---c-eeeccCCcC--H----HHH
Confidence            455667889999999997 3 55666666665 5 599999999999999987522   1 233322211  1    111


Q ss_pred             HHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          209 FERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      +.....++.+|+|+-...-....+....++++++.+
T Consensus        89 ~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~i  124 (170)
T d1jvba2          89 IRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKY  124 (170)
T ss_dssp             HHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEE
T ss_pred             HHHHhhcccchhhhcccccchHHHhhhhhcccCCEE
Confidence            111134566898887654222222223455555544

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.07  E-value=0.062  Score=43.40  Aligned_cols=82  Identities=11%  Similarity=0.168  Sum_probs=56.6

Q ss_pred             CEEEEEcCCccHHHHHHH-------HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          143 DIVLEIGPGTGSLTNVLL-------NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       143 ~~VLDiGcG~G~~t~~la-------~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      ++||=-|++.|. +..++       +.|++|+..+.+++-++.+++..+..+++.++.+|+.+..-.+..++.+......
T Consensus         3 KtilITGas~GI-G~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   81 (248)
T d1snya_           3 NSILITGCNRGL-GLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKD   81 (248)
T ss_dssp             SEEEESCCSSHH-HHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGG
T ss_pred             CEEEEeCCCCHH-HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhc
Confidence            468877876663 44333       2477999999998887777655555569999999998866544555554332345


Q ss_pred             CCccEEEEcC
Q 023482          216 SGFAKVVANI  225 (281)
Q Consensus       216 ~~~d~Vi~n~  225 (281)
                      +..|++|.|.
T Consensus        82 ~~iDiLvnNA   91 (248)
T d1snya_          82 QGLNVLFNNA   91 (248)
T ss_dssp             GCCSEEEECC
T ss_pred             CCcceEEeec
Confidence            6789999873

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.95  E-value=0.061  Score=43.88  Aligned_cols=83  Identities=16%  Similarity=0.166  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC-HHHHHHHHHHhcC--CCCeEEEEcCccccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s-~~~l~~a~~~~~~--~~~v~~~~gD~~~~~~~d~~~d~v~~~~~  214 (281)
                      +++++|=-|++.|.   ++..|++.|++|+.++.+ ++.++.+.+.+..  ..++.++.+|+.+..--...++.+.  ..
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~   80 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAV--RQ   80 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHH--HH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH--HH
Confidence            57788888877765   555666779999999986 6667666655432  2388899999988654444444332  23


Q ss_pred             CCCccEEEEcC
Q 023482          215 SSGFAKVVANI  225 (281)
Q Consensus       215 ~~~~d~Vi~n~  225 (281)
                      .+..|++|.|.
T Consensus        81 ~G~iDiLVnnA   91 (260)
T d1x1ta1          81 MGRIDILVNNA   91 (260)
T ss_dssp             HSCCSEEEECC
T ss_pred             hCCCcEEEeec
Confidence            46789999874

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.92  E-value=0.062  Score=43.85  Aligned_cols=84  Identities=19%  Similarity=0.228  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhc-CC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~-~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++++|=-|.+.|.   ++..|++.|++|+.+|.+++-++.+.+.+. .. .++..+.+|+.+..--+..++.+.  ...
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~   85 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQID--ADL   85 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH--HHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHH--HHh
Confidence            57889999976664   455566679999999999776665554442 22 388999999987654444444433  345


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|++|.|..
T Consensus        86 g~iDilVnnAg   96 (260)
T d1h5qa_          86 GPISGLIANAG   96 (260)
T ss_dssp             CSEEEEEECCC
T ss_pred             CCCcEeccccc
Confidence            78999998753

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.88  E-value=0.13  Score=41.99  Aligned_cols=84  Identities=17%  Similarity=0.130  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC-HHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s-~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +|+++|=-|++.|.   ++..|++.|++|+..+.+ ++.++.+.+.+... .++.++.+|..+...-...++.+.  ...
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~--~~~   94 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV--KIF   94 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHH--HHh
Confidence            57899999988774   566667779999999986 66666666655544 489999999987543333333332  234


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|++|.|..
T Consensus        95 g~idilV~nag  105 (272)
T d1g0oa_          95 GKLDIVCSNSG  105 (272)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCccccccc
Confidence            67899998753

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=92.65  E-value=0.16  Score=41.06  Aligned_cols=78  Identities=17%  Similarity=0.119  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +|+++|=-|.+.|.   ++..|++.|++|+..|.+++..+.+++.     +..++.+|+.+..--+..++.+.  ...+.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~--~~~G~   76 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI-----GGAFFQVDLEDERERVRFVEEAA--YALGR   76 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH-----TCEEEECCTTCHHHHHHHHHHHH--HHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-----CCeEEEEeCCCHHHHHHHHHHHH--HhcCC
Confidence            68899998976664   4455566799999999998877655442     44678889877543333333332  33477


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|-
T Consensus        77 iDiLVnnA   84 (248)
T d2d1ya1          77 VDVLVNNA   84 (248)
T ss_dssp             CCEEEECC
T ss_pred             CCeEEEeC
Confidence            89999873

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.11  Score=42.49  Aligned_cols=82  Identities=15%  Similarity=0.247  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +|+++|=-|++.|.   ++..+++.|++|+.++.+++.++.+.+.....  .++.+...|..+........+.+.  ...
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~   90 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG--KLM   90 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH--HHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHH--HHh
Confidence            68899999998885   55566667999999999999998887654322  367778888766543333333332  233


Q ss_pred             CCccEEEEc
Q 023482          216 SGFAKVVAN  224 (281)
Q Consensus       216 ~~~d~Vi~n  224 (281)
                      +..|+++.|
T Consensus        91 g~~~~li~n   99 (269)
T d1xu9a_          91 GGLDMLILN   99 (269)
T ss_dssp             TSCSEEEEC
T ss_pred             CCccccccc
Confidence            567777765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.54  E-value=0.091  Score=40.24  Aligned_cols=52  Identities=13%  Similarity=0.147  Sum_probs=39.5

Q ss_pred             HHHHhcCCCCCEEEEEcCCccH-HHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhc
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGS-LTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA  184 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~-~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~  184 (281)
                      +.+..+++++++|+=+|||... ++..+++. + .+|+++|.+++-++.|++.-.
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA   75 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA   75 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence            3445567899999999998544 44555554 5 599999999999999998644

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.33  E-value=0.25  Score=33.79  Aligned_cols=80  Identities=15%  Similarity=0.160  Sum_probs=45.5

Q ss_pred             CCCEEEEEc-CCcc--HHHHHHHHcCCEEEEEeCCHH-HHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIG-PGTG--SLTNVLLNAGATVLAIEKDQH-MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiG-cG~G--~~t~~la~~~~~v~gvD~s~~-~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      ..++|.=|| ||+|  .++..|.++|.+|+|-|.... ..+..++     ..+.+..+...+.-               .
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~-----~Gi~v~~g~~~~~i---------------~   66 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ-----AGAKIYIGHAEEHI---------------E   66 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH-----TTCEEEESCCGGGG---------------T
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH-----CCCeEEECCccccC---------------C
Confidence            445676675 3455  455666777999999998632 2222222     14566666554321               3


Q ss_pred             CccEEEEcCCCcccHHHHHHhccC
Q 023482          217 GFAKVVANIPFNISTDVIKQLLPM  240 (281)
Q Consensus       217 ~~d~Vi~n~P~~~~~~~~~~ll~~  240 (281)
                      ..|.||-.+......+.+....+.
T Consensus        67 ~~d~vV~S~AI~~~npel~~A~~~   90 (96)
T d1p3da1          67 GASVVVVSSAIKDDNPELVTSKQK   90 (96)
T ss_dssp             TCSEEEECTTSCTTCHHHHHHHHT
T ss_pred             CCCEEEECCCcCCCCHHHHHHHHc
Confidence            457777766555545555544443

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=92.20  E-value=0.2  Score=40.17  Aligned_cols=79  Identities=10%  Similarity=0.091  Sum_probs=56.3

Q ss_pred             EEEEcCCccH---HHHHHHHcCCE-------EEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhc
Q 023482          145 VLEIGPGTGS---LTNVLLNAGAT-------VLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRK  213 (281)
Q Consensus       145 VLDiGcG~G~---~t~~la~~~~~-------v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~  213 (281)
                      ||=-|++.|.   ++..|++.|++       |+..+.+++-++.+.+.+...+ ++.++.+|+.+...-+..++.+.  .
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~--~   81 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV--E   81 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH--H
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--H
Confidence            5666777664   44555666776       9999999999988887776554 78899999988654444444432  3


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|++|.|.
T Consensus        82 ~~g~iDilvnnA   93 (240)
T d2bd0a1          82 RYGHIDCLVNNA   93 (240)
T ss_dssp             HTSCCSEEEECC
T ss_pred             HcCCcceeeccc
Confidence            457899999874

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=92.12  E-value=0.14  Score=41.43  Aligned_cols=81  Identities=9%  Similarity=0.049  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +++.+|=-|.+.|.   ++..|++.|++|+.+|.++.-  .+....+.. +++.++.+|+.+..--+..++.+.  ...+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~--~~~G   79 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVI--STFG   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH--HHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHH--HHcC
Confidence            57888888877664   455566679999999997642  222222222 488999999987654444444432  2346


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        80 ~iDilVnnA   88 (247)
T d2ew8a1          80 RCDILVNNA   88 (247)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            789999874

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.50  E-value=0.31  Score=36.64  Aligned_cols=95  Identities=18%  Similarity=0.133  Sum_probs=57.5

Q ss_pred             CCCCCEEEEEcCCcc-HHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          139 VQEGDIVLEIGPGTG-SLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G-~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++++||=+|+|.. .++..+++. + .+|+++|.+++-++.+++.-.    ..++..+-..       .+.+.....+
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga----~~~i~~~~~~-------~~~~~~~~~~   98 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA----DHVVDARRDP-------VKQVMELTRG   98 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC----SEEEETTSCH-------HHHHHHHTTT
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc----ceeecCcccH-------HHHHHHhhCC
Confidence            568899999999854 444566654 5 489999999999988886432    2344332111       1111111344


Q ss_pred             CCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          216 SGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       216 ~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      ..+|+||-...-...-....+++++++.+
T Consensus        99 ~g~d~vid~~g~~~~~~~a~~~l~~~G~i  127 (172)
T d1h2ba2          99 RGVNVAMDFVGSQATVDYTPYLLGRMGRL  127 (172)
T ss_dssp             CCEEEEEESSCCHHHHHHGGGGEEEEEEE
T ss_pred             CCceEEEEecCcchHHHHHHHHHhCCCEE
Confidence            56999998776543334344555666554

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.42  E-value=0.071  Score=38.55  Aligned_cols=65  Identities=15%  Similarity=0.180  Sum_probs=42.7

Q ss_pred             CCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC
Q 023482          150 PGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       150 cG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      ||.|.++..+++    .|.+|+.+|.+++.++.++..     ...++.||+.+...-.       . ..-...|.++...
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-----~~~~~~gd~~~~~~l~-------~-a~i~~a~~vi~~~   72 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-----ATHAVIANATEENELL-------S-LGIRNFEYVIVAI   72 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-----CSEEEECCTTCTTHHH-------H-HTGGGCSEEEECC
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-----CCcceeeecccchhhh-------c-cCCccccEEEEEc
Confidence            355676666665    488999999999999887532     3467889987754211       1 1123467777766


Q ss_pred             CC
Q 023482          226 PF  227 (281)
Q Consensus       226 P~  227 (281)
                      +=
T Consensus        73 ~~   74 (134)
T d2hmva1          73 GA   74 (134)
T ss_dssp             CS
T ss_pred             Cc
Confidence            64

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=91.18  E-value=0.2  Score=40.63  Aligned_cols=84  Identities=17%  Similarity=0.169  Sum_probs=56.7

Q ss_pred             CCCEEEEEcC----CccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGc----G~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +++++|=.|.    |.|. ++..|++.|++|+.++++++..+.+++.....++..+...|+.+..-.+..++.+.  ...
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~   81 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVK--KDL   81 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH--HHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHH--HHc
Confidence            6889999985    3554 55666667999999999977666665554444566778888776543333343332  345


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|++|.|.-
T Consensus        82 g~id~lV~nag   92 (274)
T d2pd4a1          82 GSLDFIVHSVA   92 (274)
T ss_dssp             SCEEEEEECCC
T ss_pred             CCCCeEEeecc
Confidence            77899998754

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=91.05  E-value=0.19  Score=43.63  Aligned_cols=47  Identities=15%  Similarity=0.222  Sum_probs=39.6

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcC
Q 023482          139 VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFAS  185 (281)
Q Consensus       139 ~~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~  185 (281)
                      +.+++.++|||+=.|..+..++..    ..+|+++|.++...+..++++..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~  260 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  260 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            457789999999999988877653    35999999999999999988753

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=90.93  E-value=0.31  Score=37.02  Aligned_cols=100  Identities=13%  Similarity=0.119  Sum_probs=59.9

Q ss_pred             HHHhcCCCCCEEEEEcCCc--cHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHH
Q 023482          134 AAAAAVQEGDIVLEIGPGT--GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE  210 (281)
Q Consensus       134 ~~~l~~~~~~~VLDiGcG~--G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~  210 (281)
                      .+..+++++++||=.|.|.  |..+..+++. |++|+++..+++-.+.+++.-.    -.++.-+-.+      ..+.+.
T Consensus        22 ~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga----~~vi~~~~~~------~~~~~~   91 (182)
T d1v3va2          22 LEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF----DAAFNYKTVN------SLEEAL   91 (182)
T ss_dssp             HTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----SEEEETTSCS------CHHHHH
T ss_pred             HHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh----hhhccccccc------HHHHHH
Confidence            3455778999999888754  5566777776 8899999999998888876532    1223222111      111211


Q ss_pred             hhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          211 RRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       211 ~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      .......+|+|+-...- ...+....++++++.+
T Consensus        92 ~~~~~~Gvd~v~D~vG~-~~~~~~~~~l~~~G~~  124 (182)
T d1v3va2          92 KKASPDGYDCYFDNVGG-EFLNTVLSQMKDFGKI  124 (182)
T ss_dssp             HHHCTTCEEEEEESSCH-HHHHHHGGGEEEEEEE
T ss_pred             HHhhcCCCceeEEecCc-hhhhhhhhhccCCCeE
Confidence            11455679998886642 2233334555555443

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=90.30  E-value=0.44  Score=38.01  Aligned_cols=84  Identities=21%  Similarity=0.228  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCc--c--H-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          141 EGDIVLEIGPGT--G--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       141 ~~~~VLDiGcG~--G--~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      .+++||=-|++.  |  . ++..|++.|++|+..+.+++..+.+.+.....++......|..+..-....++.+.  ...
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   81 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELG--KVW   81 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH--TTC
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhh--hcc
Confidence            678899988744  4  3 66778888999999999988887777666655666777777655432222222211  455


Q ss_pred             CCccEEEEcCC
Q 023482          216 SGFAKVVANIP  226 (281)
Q Consensus       216 ~~~d~Vi~n~P  226 (281)
                      +..|.+|.|..
T Consensus        82 ~~~d~~v~~a~   92 (258)
T d1qsga_          82 PKFDGFVHSIG   92 (258)
T ss_dssp             SSEEEEEECCC
T ss_pred             cccceEEEeec
Confidence            77888888743

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.14  E-value=0.27  Score=37.15  Aligned_cols=98  Identities=13%  Similarity=0.090  Sum_probs=58.0

Q ss_pred             HHhcCCCCCEEEEEc--CCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHh
Q 023482          135 AAAAVQEGDIVLEIG--PGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       135 ~~l~~~~~~~VLDiG--cG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      +...++++++||=.|  .|.|..+..+++. +++++++..+++-.+.+++.    +--.++.  ..+-++    .+.+..
T Consensus        19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~----Ga~~vi~--~~~~~~----~~~v~~   88 (183)
T d1pqwa_          19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GVEYVGD--SRSVDF----ADEILE   88 (183)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CCSEEEE--TTCSTH----HHHHHH
T ss_pred             HHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc----ccccccc--CCccCH----HHHHHH
Confidence            444677889999877  3467777888876 88999999998888877653    2112222  112111    122222


Q ss_pred             hcCCCCccEEEEcCCCcccHHHHHHhccCCCC
Q 023482          212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGDI  243 (281)
Q Consensus       212 ~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~  243 (281)
                      ...+..+|+|+....-. ......+++++++.
T Consensus        89 ~t~~~g~d~v~d~~g~~-~~~~~~~~l~~~G~  119 (183)
T d1pqwa_          89 LTDGYGVDVVLNSLAGE-AIQRGVQILAPGGR  119 (183)
T ss_dssp             HTTTCCEEEEEECCCTH-HHHHHHHTEEEEEE
T ss_pred             HhCCCCEEEEEecccch-HHHHHHHHhcCCCE
Confidence            13456799999866522 22333455555544

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.80  E-value=0.26  Score=37.10  Aligned_cols=100  Identities=12%  Similarity=0.072  Sum_probs=57.6

Q ss_pred             HHHHhcCCCCCEEEEEcCCccHHHHH-HHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHH
Q 023482          133 LAAAAAVQEGDIVLEIGPGTGSLTNV-LLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF  209 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGcG~G~~t~~-la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v  209 (281)
                      +.+..+++++++|+=+|+|.+..... ++..  +.+|+++|.+++-++.+++.=.    -.++..+  +-+   ...+.+
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA----d~~in~~--~~~---~~~~~~   90 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA----TDFVNPN--DHS---EPISQV   90 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----CEEECGG--GCS---SCHHHH
T ss_pred             HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC----cEEEcCC--Ccc---hhHHHH
Confidence            34556788999999999998554433 4443  4589999999999998886422    1233221  111   001111


Q ss_pred             HhhcCCCCccEEEEcCCCcccHHHHHHhccCC
Q 023482          210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMG  241 (281)
Q Consensus       210 ~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~  241 (281)
                      ........+|+|+-+.--.........++..+
T Consensus        91 ~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g  122 (175)
T d1cdoa2          91 LSKMTNGGVDFSLECVGNVGVMRNALESCLKG  122 (175)
T ss_dssp             HHHHHTSCBSEEEECSCCHHHHHHHHHTBCTT
T ss_pred             HHhhccCCcceeeeecCCHHHHHHHHHHhhCC
Confidence            11134467899988765443333333444333

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.75  E-value=0.34  Score=38.81  Aligned_cols=80  Identities=20%  Similarity=0.153  Sum_probs=52.3

Q ss_pred             EEEEEcCCccH---HHHHHHHcCCEEEEEeC-CHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          144 IVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       144 ~VLDiGcG~G~---~t~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      .||=-|.+.|.   ++..+++.|++|+..+. +++.++.+.+.++.. +++.++.+|+.+..--+..++.+.  ...+..
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~i   80 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAI--DAWGTI   80 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHH--HHSSCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH--HHcCCC
Confidence            45556655553   33445556899988765 777777777666544 378899999987654444444433  345789


Q ss_pred             cEEEEcC
Q 023482          219 AKVVANI  225 (281)
Q Consensus       219 d~Vi~n~  225 (281)
                      |++|.|.
T Consensus        81 DiLVnnA   87 (244)
T d1edoa_          81 DVVVNNA   87 (244)
T ss_dssp             SEEEECC
T ss_pred             Ccccccc
Confidence            9999874

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.30  E-value=0.42  Score=35.42  Aligned_cols=89  Identities=17%  Similarity=0.199  Sum_probs=51.4

Q ss_pred             CCEEEEEcCC-ccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          142 GDIVLEIGPG-TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       142 ~~~VLDiGcG-~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      .++||=||+| .|. ++..|++.|.+|+.+|.+.+-.+.....+.   .......+.....   ...+.+      ...|
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~---~~~~~~~~~~~~~---~~~~~i------~~~~   69 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQ---HSTPISLDVNDDA---ALDAEV------AKHD   69 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCT---TEEEEECCTTCHH---HHHHHH------TTSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhccc---ccccccccccchh---hhHhhh------hccc
Confidence            4678889885 333 223333447899999999997776655433   4444433332211   111111      4568


Q ss_pred             EEEEcCCCcccHHHHHHhccCCC
Q 023482          220 KVVANIPFNISTDVIKQLLPMGD  242 (281)
Q Consensus       220 ~Vi~n~P~~~~~~~~~~ll~~~~  242 (281)
                      .+++..|+.........+.+.+.
T Consensus        70 ~~i~~~~~~~~~~~~~~~~~~~~   92 (182)
T d1e5qa1          70 LVISLIPYTFHATVIKSAIRQKK   92 (182)
T ss_dssp             EEEECSCGGGHHHHHHHHHHHTC
T ss_pred             eeEeeccchhhhHHHHHHHhhcc
Confidence            88888887766666655554433

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=88.96  E-value=0.48  Score=38.77  Aligned_cols=73  Identities=14%  Similarity=0.124  Sum_probs=43.4

Q ss_pred             EEEEEcCCccHHHHHHHH----cCCEEEEEe-CCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482          144 IVLEIGPGTGSLTNVLLN----AGATVLAIE-KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF  218 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~----~~~~v~gvD-~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~  218 (281)
                      +||=.| |+|.++..+.+    +|.+|+++| ++...-..........++++++.+|+.+...-..   .    .....+
T Consensus         2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~---~----~~~~~~   73 (338)
T d1orra_           2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTR---L----ITKYMP   73 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHH---H----HHHHCC
T ss_pred             EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHH---H----HHhcCC
Confidence            567555 67888766654    488999998 3322222222233344689999999987532111   1    112357


Q ss_pred             cEEEEc
Q 023482          219 AKVVAN  224 (281)
Q Consensus       219 d~Vi~n  224 (281)
                      |.||..
T Consensus        74 d~Vih~   79 (338)
T d1orra_          74 DSCFHL   79 (338)
T ss_dssp             SEEEEC
T ss_pred             ceEEee
Confidence            888874

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.13  E-value=1  Score=33.23  Aligned_cols=39  Identities=18%  Similarity=0.331  Sum_probs=29.0

Q ss_pred             EEEEEcCCc-cH-HHHHHHHcC--CEEEEEeCCHHHHHHHHHH
Q 023482          144 IVLEIGPGT-GS-LTNVLLNAG--ATVLAIEKDQHMVGLVRER  182 (281)
Q Consensus       144 ~VLDiGcG~-G~-~t~~la~~~--~~v~gvD~s~~~l~~a~~~  182 (281)
                      +|+=||||. |. ++..|.+.+  .+|+|+|.+++.++.|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~   45 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL   45 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence            577799874 33 444555555  4899999999999998875

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=88.03  E-value=0.38  Score=32.43  Aligned_cols=69  Identities=6%  Similarity=-0.032  Sum_probs=38.9

Q ss_pred             ccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcC-ccccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482          152 TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQED-FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS  230 (281)
Q Consensus       152 ~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD-~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~  230 (281)
                      ...++..|.++|.+|.|-|..+......   +... .+++..+. ...+                ...|.||-.+.....
T Consensus        14 Ms~LA~~L~~~G~~VsGSD~~~~~~t~~---L~~~-Gi~i~~gh~~~~i----------------~~~d~vV~SsAI~~~   73 (89)
T d1j6ua1          14 MSAVALHEFSNGNDVYGSNIEETERTAY---LRKL-GIPIFVPHSADNW----------------YDPDLVIKTPAVRDD   73 (89)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCHHHHH---HHHT-TCCEESSCCTTSC----------------CCCSEEEECTTCCTT
T ss_pred             HHHHHHHHHhCCCeEEEEeCCCChhHHH---HHHC-CCeEEeeeccccc----------------CCCCEEEEecCcCCC
Confidence            3345566667799999999986333222   2222 35554442 2222                345788877666555


Q ss_pred             HHHHHHhccC
Q 023482          231 TDVIKQLLPM  240 (281)
Q Consensus       231 ~~~~~~ll~~  240 (281)
                      .+.+....+.
T Consensus        74 npel~~A~~~   83 (89)
T d1j6ua1          74 NPEIVRARME   83 (89)
T ss_dssp             CHHHHHHHHT
T ss_pred             CHHHHHHHHc
Confidence            5666555443

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.78  E-value=0.34  Score=38.81  Aligned_cols=82  Identities=16%  Similarity=0.165  Sum_probs=52.9

Q ss_pred             CCEEEEEcCCccH---HHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482          142 GDIVLEIGPGTGS---LTNVLLNAGA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS  216 (281)
Q Consensus       142 ~~~VLDiGcG~G~---~t~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~  216 (281)
                      +++||=-|++.|.   ++..|++.|+  +|++...+++.++.+++..  ..++.++.+|+.+..-.+..++.+.......
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   80 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIK--DSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCC--CTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhh--CCceEEEEEecCCHHHHHHHHHHHHHHhCCC
Confidence            4688888877763   4455555664  7999998887766554322  2489999999987654444444443211223


Q ss_pred             CccEEEEcC
Q 023482          217 GFAKVVANI  225 (281)
Q Consensus       217 ~~d~Vi~n~  225 (281)
                      ..|++|.|.
T Consensus        81 ~idilinnA   89 (250)
T d1yo6a1          81 GLSLLINNA   89 (250)
T ss_dssp             CCCEEEECC
T ss_pred             CeEEEEEcC
Confidence            579999873

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.38  E-value=1.1  Score=32.71  Aligned_cols=73  Identities=14%  Similarity=0.039  Sum_probs=44.6

Q ss_pred             EEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          144 IVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      +|+=+|+  |..+..+++    .+.+++.||.+++........... .++.++.||+.+...       +.. ..-...+
T Consensus         5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~-~~~~vi~Gd~~d~~~-------L~~-a~i~~a~   73 (153)
T d1id1a_           5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-DNADVIPGDSNDSSV-------LKK-AGIDRCR   73 (153)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-TTCEEEESCTTSHHH-------HHH-HTTTTCS
T ss_pred             EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc-CCcEEEEccCcchHH-------HHH-hccccCC
Confidence            4555554  666666655    378999999998754433333221 378999999987432       111 2235567


Q ss_pred             EEEEcCCC
Q 023482          220 KVVANIPF  227 (281)
Q Consensus       220 ~Vi~n~P~  227 (281)
                      .|+.-.+-
T Consensus        74 ~vi~~~~~   81 (153)
T d1id1a_          74 AILALSDN   81 (153)
T ss_dssp             EEEECSSC
T ss_pred             EEEEcccc
Confidence            77776553

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=86.03  E-value=1.1  Score=35.71  Aligned_cols=83  Identities=14%  Similarity=0.131  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC----CccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHh-hc
Q 023482          141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFER-RK  213 (281)
Q Consensus       141 ~~~~VLDiGc----G~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~-~~  213 (281)
                      .++++|=.|+    |.|. ++..|++.|++|+..+.+..-+..  +..+.. .+...+++|+.+..-.+..++.+.. ..
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~--~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~   82 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQ--RITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   82 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHH--HHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHH--HHHHHcCCceeeEeeecccccccccccchhhhccc
Confidence            6789999984    4564 556778889999999988754422  222222 3677888998775433344444432 13


Q ss_pred             CCCCccEEEEcC
Q 023482          214 SSSGFAKVVANI  225 (281)
Q Consensus       214 ~~~~~d~Vi~n~  225 (281)
                      ..+..|+++.|.
T Consensus        83 ~~~~ld~~i~~a   94 (268)
T d2h7ma1          83 AGNKLDGVVHSI   94 (268)
T ss_dssp             TTCCEEEEEECC
T ss_pred             cCCCcceeeecc
Confidence            346788888774

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=85.82  E-value=0.39  Score=38.70  Aligned_cols=84  Identities=10%  Similarity=-0.003  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhc--CCCCeEEEEcCcc-ccccccchhhHHHhhcC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFV-KCHIRSHMLSLFERRKS  214 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~--~~~~v~~~~gD~~-~~~~~d~~~d~v~~~~~  214 (281)
                      ++++||=-|++.|.   ++..+++.|++|+.+..+.+-.+.+.+...  ...++.++..|.. +.......+|.+.  ..
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~   81 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF--DQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH--HH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH--HH
Confidence            57889999988775   455566678887777443322332222221  2237888999986 3322233344443  23


Q ss_pred             CCCccEEEEcCC
Q 023482          215 SSGFAKVVANIP  226 (281)
Q Consensus       215 ~~~~d~Vi~n~P  226 (281)
                      .+..|++|.|.-
T Consensus        82 ~g~iDilvnnAG   93 (254)
T d1sbya1          82 LKTVDILINGAG   93 (254)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEeCCC
Confidence            367899998753

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.79  E-value=0.51  Score=35.46  Aligned_cols=50  Identities=24%  Similarity=0.247  Sum_probs=39.1

Q ss_pred             HHHHhcCCCCCEEEEEcC-C-ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH
Q 023482          133 LAAAAAVQEGDIVLEIGP-G-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER  182 (281)
Q Consensus       133 l~~~l~~~~~~~VLDiGc-G-~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~  182 (281)
                      .+...+++++++||=.|. | .|..+..+++. |++|++++.+++-.+.+++.
T Consensus        19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l   71 (171)
T d1iz0a2          19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL   71 (171)
T ss_dssp             HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT
T ss_pred             HHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc
Confidence            445567789999999884 3 46677777776 88999999999888887763

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.58  E-value=0.52  Score=35.86  Aligned_cols=100  Identities=21%  Similarity=0.185  Sum_probs=58.7

Q ss_pred             HHHHHhcCCCCCEEEEEcCC--ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhH
Q 023482          132 QLAAAAAVQEGDIVLEIGPG--TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL  208 (281)
Q Consensus       132 ~l~~~l~~~~~~~VLDiGcG--~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~  208 (281)
                      .+.......++++||=-|.+  .|.++..+++. |++|+++--+++-.+.+++.-.   . .++.-+  +.. .    +.
T Consensus        22 ~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa---~-~vi~~~--~~~-~----~~   90 (176)
T d1xa0a2          22 RLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGA---K-EVLARE--DVM-A----ER   90 (176)
T ss_dssp             HHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTC---S-EEEECC-------------
T ss_pred             HHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhccc---c-eeeecc--hhH-H----HH
Confidence            34444556678899998864  55677777776 8899999999888888876422   1 222211  110 0    00


Q ss_pred             HHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482          209 FERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF  244 (281)
Q Consensus       209 v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~  244 (281)
                      +. ...++.+|+|+-+.--......+. ++++++++
T Consensus        91 ~~-~~~~~gvD~vid~vgg~~~~~~l~-~l~~~Gri  124 (176)
T d1xa0a2          91 IR-PLDKQRWAAAVDPVGGRTLATVLS-RMRYGGAV  124 (176)
T ss_dssp             ----CCSCCEEEEEECSTTTTHHHHHH-TEEEEEEE
T ss_pred             HH-HhhccCcCEEEEcCCchhHHHHHH-HhCCCceE
Confidence            10 034568999888766444444444 44444443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.57  E-value=0.36  Score=34.42  Aligned_cols=64  Identities=19%  Similarity=0.239  Sum_probs=45.6

Q ss_pred             CCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCC
Q 023482          150 PGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP  226 (281)
Q Consensus       150 cG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P  226 (281)
                      ||.|..+..+++.  +.+++.+|.++...+.++..     ++.++.||+.+-..       +.. ..-...+.++...+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-----~~~~i~Gd~~~~~~-------L~~-a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-----GANFVHGDPTRVSD-------LEK-ANVRGARAVIVNLE   71 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-----TCEEEESCTTSHHH-------HHH-TTCTTCSEEEECCS
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-----CccccccccCCHHH-------HHH-hhhhcCcEEEEecc
Confidence            6778899999886  56899999999988776542     67899999876431       111 22355677777655

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=84.16  E-value=0.43  Score=39.65  Aligned_cols=58  Identities=24%  Similarity=0.133  Sum_probs=41.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 023482          141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC  199 (281)
Q Consensus       141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~  199 (281)
                      .+++||=.| |+|.++..+++    .|.+|+++|.++.-.....+.....++++++.+|+.+.
T Consensus         7 ~~KkILVTG-~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~   68 (356)
T d1rkxa_           7 QGKRVFVTG-HTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQ   68 (356)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccCh
Confidence            578999888 56888877765    48899999987554333333333335899999998764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=84.05  E-value=1.5  Score=36.15  Aligned_cols=71  Identities=13%  Similarity=0.244  Sum_probs=44.5

Q ss_pred             EEEEEcCCccHHHHHHHH----cCCEEEEEeC----CHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482          144 IVLEIGPGTGSLTNVLLN----AGATVLAIEK----DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS  215 (281)
Q Consensus       144 ~VLDiGcG~G~~t~~la~----~~~~v~gvD~----s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~  215 (281)
                      +||=.| |+|.++..++.    .+.+|+++|.    ....+........  .+++++++|+.+...-.   ..+    ..
T Consensus         2 KiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~l~---~~~----~~   71 (338)
T d1udca_           2 RVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG--KHPTFVEGDIRNEALMT---EIL----HD   71 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHT--SCCEEEECCTTCHHHHH---HHH----HH
T ss_pred             EEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcC--CCCEEEEeecCCHHHHH---HHH----hc
Confidence            466666 78998888765    3789999985    2333333332222  48999999998754211   111    12


Q ss_pred             CCccEEEEc
Q 023482          216 SGFAKVVAN  224 (281)
Q Consensus       216 ~~~d~Vi~n  224 (281)
                      ..+|+||.-
T Consensus        72 ~~~d~ViHl   80 (338)
T d1udca_          72 HAIDTVIHF   80 (338)
T ss_dssp             TTCSEEEEC
T ss_pred             cCCCEEEEC
Confidence            457988864

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.02  E-value=1.2  Score=35.21  Aligned_cols=65  Identities=12%  Similarity=0.158  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS  207 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d  207 (281)
                      +|+.+|=-|++.|.   ++..|++.|++|+.+|.+++-++.+.+.+.  .+......|..+....+..++
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~   71 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLG--NNCVFAPADVTSEKDVQTALA   71 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHC--TTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC--CCccccccccccccccccccc
Confidence            68889999988775   455566679999999999888877766654  366777777766544333333

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.71  E-value=1.1  Score=35.71  Aligned_cols=75  Identities=12%  Similarity=0.207  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=-|++.|.   ++..|++.|++|+.+|.+++-++...    +..+++....|.....    .++.+.  ...+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~----~~~~~~~~~~d~~~~~----~~~~~~--~~~~~   74 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE----KYPGIQTRVLDVTKKK----QIDQFA--NEVER   74 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG----GSTTEEEEECCTTCHH----HHHHHH--HHCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----hccCCceeeeeccccc----cccccc--ccccc
Confidence            57888988876664   45555667999999999987665432    2336677777754322    122221  23367


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|.+|.|.
T Consensus        75 id~lVn~a   82 (245)
T d2ag5a1          75 LDVLFNVA   82 (245)
T ss_dssp             CSEEEECC
T ss_pred             ceeEEecc
Confidence            89998874

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.47  E-value=1.2  Score=35.51  Aligned_cols=84  Identities=14%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCCccH---HHHHHHH---cCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHh
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLN---AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFER  211 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~---~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~  211 (281)
                      .++.+|=-|++.|.   ++..|++   .|++|+.++.+++.++.+.+.+...   .++.++.+|+.+....+..++.+..
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            45566666776654   3444554   3789999999999998887765421   2788899999876544444444322


Q ss_pred             h--cCCCCccEEEEc
Q 023482          212 R--KSSSGFAKVVAN  224 (281)
Q Consensus       212 ~--~~~~~~d~Vi~n  224 (281)
                      .  ......|+++.|
T Consensus        85 ~~~~~~~~~~~lvnn   99 (259)
T d1oaaa_          85 LPRPEGLQRLLLINN   99 (259)
T ss_dssp             SCCCTTCCEEEEEEC
T ss_pred             hhhhccCceEEEEec
Confidence            1  122345677765

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.36  E-value=2.6  Score=31.47  Aligned_cols=85  Identities=8%  Similarity=0.091  Sum_probs=47.6

Q ss_pred             EEEEEcCCc-cHH-HHHHHHc-CCEEEEE-eCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482          144 IVLEIGPGT-GSL-TNVLLNA-GATVLAI-EKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA  219 (281)
Q Consensus       144 ~VLDiGcG~-G~~-t~~la~~-~~~v~gv-D~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d  219 (281)
                      +|.=||||. |.. ...+... +.+++|+ |.+++-.+...+...-....+ ...|..++             ......|
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~l-------------l~~~~iD   68 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTK-IHGSYESL-------------LEDPEID   68 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCE-EESSHHHH-------------HHCTTCC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccccccee-ecCcHHHh-------------hhccccc
Confidence            567789984 432 2223333 5688876 899877665554443212223 23344432             1224567


Q ss_pred             EEEEcCCCcccHHHHHHhccCCC
Q 023482          220 KVVANIPFNISTDVIKQLLPMGD  242 (281)
Q Consensus       220 ~Vi~n~P~~~~~~~~~~ll~~~~  242 (281)
                      +|+...|-....+....+++.|.
T Consensus        69 ~v~I~tp~~~h~~~~~~~l~~g~   91 (184)
T d1ydwa1          69 ALYVPLPTSLHVEWAIKAAEKGK   91 (184)
T ss_dssp             EEEECCCGGGHHHHHHHHHTTTC
T ss_pred             eeeecccchhhcchhhhhhhccc
Confidence            77776666666677777666654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.80  E-value=1.9  Score=36.21  Aligned_cols=73  Identities=15%  Similarity=0.120  Sum_probs=43.0

Q ss_pred             CCEEEEEcCCccHHHHHHHH----cCCEEEEEeCC-HH-------------------HHHHHHHHhcCCCCeEEEEcCcc
Q 023482          142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKD-QH-------------------MVGLVRERFASIDQLKVLQEDFV  197 (281)
Q Consensus       142 ~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s-~~-------------------~l~~a~~~~~~~~~v~~~~gD~~  197 (281)
                      |.+||=.| |+|.++..|+.    .|.+|+++|-- ..                   .+...+..  ...+++++.+|+.
T Consensus         1 g~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~Dl~   77 (393)
T d1i24a_           1 GSRVMVIG-GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL--TGKSIELYVGDIC   77 (393)
T ss_dssp             -CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH--HCCCCEEEESCTT
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhh--cCCCcEEEEccCC
Confidence            46788777 58988877765    48899999931 11                   11111111  1247999999998


Q ss_pred             ccccccchhhHHHhhcCCCCccEEEEc
Q 023482          198 KCHIRSHMLSLFERRKSSSGFAKVVAN  224 (281)
Q Consensus       198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n  224 (281)
                      +...-+..+       ....+|+|+.-
T Consensus        78 d~~~l~~~~-------~~~~~d~ViHl   97 (393)
T d1i24a_          78 DFEFLAESF-------KSFEPDSVVHF   97 (393)
T ss_dssp             SHHHHHHHH-------HHHCCSEEEEC
T ss_pred             CHHHHHHHH-------Hhhcchheecc
Confidence            754322111       11357888863

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.30  E-value=3  Score=32.54  Aligned_cols=69  Identities=20%  Similarity=0.239  Sum_probs=45.8

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      +++++|=-|.+.|.   ++..|++.|++|+.+|.+++.++..        ..+++.+|+.+.      .|.+.  ...+.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~--------~~~~~~~Dv~~~------~~~~~--~~~g~   66 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS--------GHRYVVCDLRKD------LDLLF--EKVKE   66 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT--------CSEEEECCTTTC------HHHHH--HHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc--------CCcEEEcchHHH------HHHHH--HHhCC
Confidence            57889999977664   3445566699999999998765432        235677777542      12221  33467


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        67 iD~lVnnA   74 (234)
T d1o5ia_          67 VDILVLNA   74 (234)
T ss_dssp             CSEEEECC
T ss_pred             CcEEEecc
Confidence            89999873

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=81.19  E-value=0.93  Score=36.93  Aligned_cols=79  Identities=10%  Similarity=-0.007  Sum_probs=61.0

Q ss_pred             EEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC
Q 023482          146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI  225 (281)
Q Consensus       146 LDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~  225 (281)
                      +.+=+|+-.++..+.+..-+++.+|+.+.-.+..++++....++++.+.|..+.-.        ..+.+...--+|+.+|
T Consensus        87 l~~YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~~~~~~v~~~DG~~~l~--------allPP~~rRgLVLIDP  158 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLN--------ALLPPPEKRGLIFIDP  158 (271)
T ss_dssp             CCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHH--------HHCSCTTSCEEEEECC
T ss_pred             cCcCCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhccCCCceEEcCchHHHHH--------hhCCCCCCceEEEecC
Confidence            45779999999888888789999999999999999888776799999999876311        1112334456788899


Q ss_pred             CCcccHH
Q 023482          226 PFNISTD  232 (281)
Q Consensus       226 P~~~~~~  232 (281)
                      ||....+
T Consensus       159 pYE~k~e  165 (271)
T d2oo3a1         159 SYERKEE  165 (271)
T ss_dssp             CCCSTTH
T ss_pred             CcCCHHH
Confidence            9977653

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.30  E-value=1.7  Score=34.31  Aligned_cols=73  Identities=16%  Similarity=0.181  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482          141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG  217 (281)
Q Consensus       141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~  217 (281)
                      .++++|=-|++.|.   ++..+++.|++|+.+|.+++          ...++..+.+|+.+..--+..++.+.  ...+.
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~g~   73 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG----------APKGLFGVEVDVTDSDAVDRAFTAVE--EHQGP   73 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC----------CCTTSEEEECCTTCHHHHHHHHHHHH--HHHSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc----------hhcCceEEEEecCCHHHHHHHHHHHH--HhcCC
Confidence            67889998987665   45555667999999998742          22367788899887654344444433  23467


Q ss_pred             ccEEEEcC
Q 023482          218 FAKVVANI  225 (281)
Q Consensus       218 ~d~Vi~n~  225 (281)
                      .|++|.|.
T Consensus        74 iDiLVnnA   81 (237)
T d1uzma1          74 VEVLVSNA   81 (237)
T ss_dssp             CSEEEEEC
T ss_pred             ceEEEeee
Confidence            89999874