Citrus Sinensis ID: 023563

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MSTISRMKCLITPPFSLTPISLHLSKATTLASKSCFLNPATSLRNPKFIHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCRQHYVSGQVVVEAARIVLESQKVQCGSYV
Secondary Structure (PSIPRED)
ccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEEccccccccccEEcccccccccEEEccccHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHHcccEEEEcccccccccccccEEEEEccccEEEEcccccEEEccHHHHccccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEccccccccccEEEEccccEEEEEEcccHHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHEHcccccEEEEEccccccHHHHHHcccccccHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mstisrmkclitppfsltpislhlskattlaskscflnpatslrnpkfihsmvsprpplfslqnrnlhseasvsspsgeihvivgpmfagkTTTLLRRIQAETQKGRNVAVIKsnkdtrygldsivthdgvklpccalttLSSFRqkfgsdaydqvdvigideaQFFEDLYDFCREAADHDGKTVIVAGLDgdylrrsfgsvidiipladSVTKLTARCEfcgkrafftlrkteetkteliggsdiympvCRQHYVSGQVVVEAARIVLESQKVQCGSYV
Flexible Loop (DISEMBL)
mstisrmkclitppfsltpISLHLSKATTLASKSCFLNPATSLRNPKFIHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIqaetqkgrnvaviksnkdtrygLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGkrafftlrkteetkteliggsdiYMPVCRQHYVSGQVVVEAARIVLesqkvqcgsyv
Low Complexity Region (SEG)
MSTISRMKCLITPPFSLTPISLHLSKATTLASKSCFLNPATSLRNPKFIHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRkteetkteLIGGSDIYMPVCRQHYVSGQVVVEAARIVLESQKVQCGSYV
Disordered region (IsUnstruct)
*******KCLITPPFSLTPISLHLSKATTLASKSCFLNPATSLR***FI******************************IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCRQHYVSGQVVVEAARIVLESQK*******
Disordered Region (DISOPRED)
*********LITPPFSLTP**LHLS**TTLA***************************LFSLQNRN********SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCRQHYVSG**********************
Disordered Region (DISEMBL)
MSTISRMKCLITPPFSLTPISLHLSKATTLASKSCFLNPATSLRNPKFIHSMVSPRPPLFSLQNRNL**********GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCRQHYVSGQVVVEAARIVLESQ********
Disordered Region (DISPRO)
*********LITPPFSLTPISLHLSKATTLASKSCFLNPATSLRNPKFIHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCRQHYVSGQVVVEAARIVLES*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTISRMKCLITPPFSLTPISLHLSKATTLASKSCFLNPATSLRNPKFIHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCRQHYVSGQVVVEAARIVLESQKVQCGSYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
O81263	271	Thymidine kinase OS=Oryza	yes	no	0.725	0.749	0.756	2e-88
P23335	177	Thymidine kinase OS=Swine	yes	no	0.621	0.983	0.461	2e-38
P04184	233	Thymidine kinase, cytosol	yes	no	0.614	0.738	0.473	3e-36
P04047	224	Thymidine kinase, cytosol	yes	no	0.628	0.785	0.436	1e-35
P04183	234	Thymidine kinase, cytosol	yes	no	0.639	0.764	0.456	7e-35
P09768	234	Thymidine kinase, cytosol	yes	no	0.625	0.747	0.452	2e-34
A5D7R8	238	Thymidine kinase, cytosol	yes	no	0.65	0.764	0.444	3e-34
Q27564	227	Thymidine kinase 1 OS=Dic	yes	no	0.635	0.784	0.443	6e-34
Q90033	181	Thymidine kinase OS=Yaba	N/A	no	0.628	0.972	0.431	2e-33
Q9Q8N6	178	Thymidine kinase OS=Myxom	no	no	0.603	0.949	0.428	2e-33

>sp|O81263|KITH_ORYSJ Thymidine kinase OS=Oryza sativa subsp. japonica GN=TK PE=2 SV=2

 Score =  325 bits (834), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 155/205 (75%), Positives = 177/205 (86%), Gaps = 2/205 (0%)

Query: 70  EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG-RNVAVIKSNKDTRYGLDSIVTH 128
           EA  S P GEIHVIVGPMFAGKTT LLRR+Q E   G RNVA+IKS+KD RYGLDS+VTH
Sbjct: 60  EAQPSYP-GEIHVIVGPMFAGKTTALLRRVQVEAGTGSRNVALIKSDKDNRYGLDSVVTH 118

Query: 129 DGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVA 188
           DG K+PC AL  LSSF+ K G++AYD+VDVIGIDEAQFF+DL+DFC +AAD DGK V+VA
Sbjct: 119 DGTKMPCWALPELSSFQDKLGTEAYDKVDVIGIDEAQFFDDLHDFCCKAADRDGKIVVVA 178

Query: 189 GLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYM 248
           GLDGDY R  FGSV+DIIPLADSVTKLTARCE CG+RAFFTLRKT ETKTELIGG+D+YM
Sbjct: 179 GLDGDYKRNKFGSVLDIIPLADSVTKLTARCELCGRRAFFTLRKTRETKTELIGGADVYM 238

Query: 249 PVCRQHYVSGQVVVEAARIVLESQK 273
           PVCRQHY+ GQ+V+EA RIVL+ +K
Sbjct: 239 PVCRQHYLDGQIVIEATRIVLDLEK 263

Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 2EC: 1

>sp|P23335|KITH_SWPVK Thymidine kinase OS=Swinepox virus (strain Kasza) GN=TK PE=3 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/180 (46%), Positives = 117/180 (65%), Gaps = 6/180 (3%)

Query: 78  GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCA 137
           G IH+I+GPMF+GK+T L+R +        N  VIK +KD RYG D++ THD   +   A
Sbjct: 4   GFIHLILGPMFSGKSTELIRLVNRYQIATYNCRVIKYSKDNRYGNDAVYTHDKCYIS--A 61

Query: 138 LTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRR 197
           ++T S F  K   D  D VD++GIDE QFF D+ +FC   A+  GK VIVA LDG Y R+
Sbjct: 62  VSTDSLFDIK---DTLDDVDIVGIDEGQFFNDIVEFCEYIANK-GKIVIVAALDGTYERK 117

Query: 198 SFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCRQHYVS 257
            FG+++++IPL++ VTKL A C  C + A F+ R ++E + ELIGG + Y+ VCR  Y++
Sbjct: 118 PFGNILNLIPLSEKVTKLNAICMICHRDASFSKRLSDEKEIELIGGKEKYLSVCRSCYLT 177

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P04184|KITH_MOUSE Thymidine kinase, cytosolic OS=Mus musculus GN=Tk1 PE=2 SV=3

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 118/188 (62%), Gaps = 16/188 (8%)

Query: 74  SSPS---GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG 130
           SSPS   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY  +S  THD 
Sbjct: 12  SSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-NSFSTHDR 70

Query: 131 V---KLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIV 187
                LP C L  ++  ++  G      V VIGIDE QFF D+ DFC E   ++GKTVIV
Sbjct: 71  NTMDALPACMLRDVT--QESLG------VAVIGIDEGQFFPDIVDFC-EMMANEGKTVIV 121

Query: 188 AGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIY 247
           A LDG + R++FGS+++++PLA+SV KLTA C  C + A +T R   E + E+IGG+D Y
Sbjct: 122 AALDGTFQRKAFGSILNLVPLAESVVKLTAVCMECFREAAYTKRLGLEKEVEVIGGADKY 181

Query: 248 MPVCRQHY 255
             VCR  Y
Sbjct: 182 HSVCRLCY 189

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P04047|KITH_CHICK Thymidine kinase, cytosolic OS=Gallus gallus GN=TK1 PE=3 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 114/188 (60%), Gaps = 12/188 (6%)

Query: 71  ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG 130
            S   P G+I VI GPMF+GK+T L+RR++          ++K  KDTRY    + THD 
Sbjct: 12  GSPGRPRGQIQVIFGPMFSGKSTELMRRVRRFQLAQYRCLLVKYAKDTRYCTTGVSTHDR 71

Query: 131 VKL---PCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIV 187
             +   P CAL  +  +++  GS       VIGIDE QFF D+ +FC + A+  GKTVIV
Sbjct: 72  NTMEARPACALQDV--YQEALGSA------VIGIDEGQFFPDIVEFCEKMAN-TGKTVIV 122

Query: 188 AGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIY 247
           A LDG + R++FGS+++++PLA+SV KL A C  C + A +T R   E + E+IGG+D Y
Sbjct: 123 AALDGTFQRKAFGSILNLVPLAESVVKLNAVCMECYREASYTKRLGAEREVEVIGGADKY 182

Query: 248 MPVCRQHY 255
             VCR  Y
Sbjct: 183 HSVCRACY 190

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P04183|KITH_HUMAN Thymidine kinase, cytosolic OS=Homo sapiens GN=TK1 PE=1 SV=2

 Score =  147 bits (372), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 89/195 (45%), Positives = 117/195 (60%), Gaps = 16/195 (8%)

Query: 71  ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG 130
            S S   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY   S  THD 
Sbjct: 12  GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDR 70

Query: 131 ---VKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIV 187
                LP C L  ++  ++  G      V VIGIDE QFF D+ +FC EA  + GKTVIV
Sbjct: 71  NTMEALPACLLRDVA--QEALG------VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIV 121

Query: 188 AGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIY 247
           A LDG + R+ FG++++++PLA+SV KLTA C  C + A +T R   E + E+IGG+D Y
Sbjct: 122 AALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKY 181

Query: 248 MPVCRQHY---VSGQ 259
             VCR  Y    SGQ
Sbjct: 182 HSVCRLCYFKKASGQ 196

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P09768|KITH_CRIGR Thymidine kinase, cytosolic OS=Cricetulus griseus GN=TK1 PE=3 SV=1

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 114/188 (60%), Gaps = 13/188 (6%)

Query: 71  ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG 130
            S S   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY   S  THD 
Sbjct: 12  GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQNKCLVIKYAKDTRYS-SSFSTHDR 70

Query: 131 V---KLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIV 187
                LP C L  ++  ++  G+       VIGIDE QFF D+ +FC E   + GKTVIV
Sbjct: 71  NTMDALPACLLRDVA--QEALGAA------VIGIDEGQFFPDIVEFC-EVMANAGKTVIV 121

Query: 188 AGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIY 247
           A LDG + R++FGS+++++PLA+SV KLTA C  C + A +T R   E + E+IGG+D Y
Sbjct: 122 AALDGTFQRKAFGSILNLVPLAESVVKLTAVCMECFREAAYTKRLGLEKEVEVIGGADKY 181

Query: 248 MPVCRQHY 255
             VCR  Y
Sbjct: 182 HSVCRVCY 189

Cricetulus griseus (taxid: 10029)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|A5D7R8|KITH_BOVIN Thymidine kinase, cytosolic OS=Bos taurus GN=TK1 PE=2 SV=1

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/198 (44%), Positives = 115/198 (58%), Gaps = 16/198 (8%)

Query: 71  ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG 130
            S S   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY      THD 
Sbjct: 12  GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQVAQYKCLVIKYAKDTRYS-SLFSTHDR 70

Query: 131 ---VKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIV 187
                LP C L  +    Q+        V VIGIDE QFF D+ +FC   A+  GKTVIV
Sbjct: 71  NTMEALPACLLRDVIQDAQR--------VAVIGIDEGQFFPDIVEFCENMAN-SGKTVIV 121

Query: 188 AGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIY 247
           A LDG + R++FG++++++PLA+SV KLTA C  C + A +T R   E + E+IGG+D Y
Sbjct: 122 AALDGTFQRKAFGTILNLVPLAESVVKLTAVCMECFREAAYTKRLGVEKEVEVIGGADKY 181

Query: 248 MPVCRQHY---VSGQVVV 262
             VCR  Y    SGQ  V
Sbjct: 182 HSVCRLCYFKKASGQPAV 199

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q27564|KITH_DICDI Thymidine kinase 1 OS=Dictyostelium discoideum GN=thyB PE=1 SV=1

 Score =  144 bits (363), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 111/194 (57%), Gaps = 16/194 (8%)

Query: 73  VSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG--LDS--IVTH 128
           V+  +G+I VI GPMF+GKTT L+RRI+      +   +IK +KDTRY   +D   +VTH
Sbjct: 3   VTQIAGKIQVIFGPMFSGKTTELIRRIKRFNFANKKCLLIKYSKDTRYNDNIDKSFLVTH 62

Query: 129 DGVK---LPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTV 185
           D       PC  L  +    Q +        DVIGIDE QFF D+  F  + A+  GKTV
Sbjct: 63  DKQNYQAFPCSILEDVKEQAQNY--------DVIGIDEGQFFPDVVQFSEDLANQ-GKTV 113

Query: 186 IVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSD 245
           I+A LDG + R+ F SVID++  A+ +TKLTA C  C   A F+ R  E    ELIGG D
Sbjct: 114 IIAALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESDDIELIGGID 173

Query: 246 IYMPVCRQHYVSGQ 259
            Y+ VCR  Y S Q
Sbjct: 174 KYISVCRGCYNSDQ 187

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q90033|KITH_YMTV5 Thymidine kinase OS=Yaba monkey tumor virus (strain VR587) GN=TK PE=3 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 7/183 (3%)

Query: 73  VSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVK 132
           ++S SG IH+I+GPMF+GK+T L+R ++          VIK +KD RYG   +VTHD   
Sbjct: 1   MNSRSGYIHIILGPMFSGKSTELIRLLKRYQVAMYTCLVIKYSKDERYG-RGLVTHDNDS 59

Query: 133 LPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDG 192
           +P   + +L+       +D     DVIGIDE QFF D+ +FC   A+ +GK +IVA LDG
Sbjct: 60  VPAIPVNSLNEIN---CNDI--NADVIGIDEGQFFPDIVEFCDYMAN-NGKILIVAALDG 113

Query: 193 DYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCR 252
            +LR+ FG+++++IP A+ V KLTA C  C   A F+ R ++E + E+IGG + Y  VCR
Sbjct: 114 TFLRQPFGNILNLIPRAEYVLKLTAVCMICFGSASFSKRISDEQEIEIIGGKEKYQSVCR 173

Query: 253 QHY 255
             Y
Sbjct: 174 VCY 176

Papio hamadryas (taxid: 9557)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|Q9Q8N6|KITH_MYXVL Thymidine kinase OS=Myxoma virus (strain Lausanne) GN=TK PE=3 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 110/182 (60%), Gaps = 13/182 (7%)

Query: 77  SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGV---KL 133
            G+IH+I+GPMFAGK+T L+R ++          V+K  KD RYG + + THD      +
Sbjct: 5   GGQIHLIIGPMFAGKSTELIRLVKRYQIARYKCLVVKYEKDARYG-NGVRTHDNTCISAV 63

Query: 134 PCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGD 193
           P  +L  + S  +         V+VIGIDE QFF ++  FC   A+  GK +IVA LDG 
Sbjct: 64  PTASLDDVESISE--------HVEVIGIDEGQFFPNIVSFCERMANA-GKVLIVAALDGT 114

Query: 194 YLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCRQ 253
           + R+ F ++ ++IPLA++VTKL A C +C K A F+ R   ET+ E+IGGSD Y  VCR+
Sbjct: 115 FQRKPFTNICELIPLAENVTKLNAVCMYCYKDASFSKRLGNETEIEIIGGSDKYKSVCRK 174

Query: 254 HY 255
            Y
Sbjct: 175 CY 176

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
359497110	283	PREDICTED: thymidine kinase-like [Vitis	0.957	0.946	0.742	1e-110
224139492	228	predicted protein [Populus trichocarpa]	0.792	0.973	0.837	1e-104
356557967	279	PREDICTED: thymidine kinase-like [Glycin	0.95	0.953	0.684	1e-101
388507780	279	unknown [Lotus japonicus]	0.971	0.974	0.677	1e-100
449505560	244	PREDICTED: thymidine kinase-like [Cucumi	0.785	0.901	0.781	2e-98
356532644	276	PREDICTED: thymidine kinase-like [Glycin	0.95	0.963	0.659	8e-98
224086509	192	predicted protein [Populus trichocarpa]	0.685	1.0	0.880	8e-98
449443536	244	PREDICTED: thymidine kinase-like [Cucumi	0.785	0.901	0.763	5e-95
359485880	234	PREDICTED: thymidine kinase-like [Vitis	0.725	0.867	0.793	2e-92
255586437	234	thymidine kinase, putative [Ricinus comm	0.735	0.880	0.769	1e-90

>gi|359497110|ref|XP_002266298.2| PREDICTED: thymidine kinase-like [Vitis vinifera]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/283 (74%), Positives = 232/283 (81%), Gaps = 15/283 (5%)

Query: 6   RMKCLITPPFSLTPISLHLSKATT-----LASKSCFLNPATSLRNPKFIH--SMVSPRPP 58
           RMK L++P FS   +S HL+K T+     LASKS   N    L+NP  +H  S +S   P
Sbjct: 3   RMKSLLSPSFS--TLSPHLTKTTSFSLYFLASKSILCNSQI-LKNPDCLHIKSTISSMKP 59

Query: 59  LFS---LQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN 115
           L S   +Q+R    EAS SS SGEIHVIVGPMF+GKTTTLLRRIQ+ET  GR VA+IKSN
Sbjct: 60  LMSSNSIQSRRFQIEASQSS-SGEIHVIVGPMFSGKTTTLLRRIQSETSNGRKVAIIKSN 118

Query: 116 KDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCR 175
           KDTRYGLDSIVTHDGVKLPC AL  LSSFR+K GSDAYD++DVIGIDEAQFF DLY+FC 
Sbjct: 119 KDTRYGLDSIVTHDGVKLPCWALADLSSFREKLGSDAYDELDVIGIDEAQFFGDLYEFCC 178

Query: 176 EAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEE 235
           +AADHDGKTVIVAGLDGDYLRRSFGSV+DIIPLADSVTKLTARCE CGKRAFFTLRKT E
Sbjct: 179 KAADHDGKTVIVAGLDGDYLRRSFGSVLDIIPLADSVTKLTARCEICGKRAFFTLRKTAE 238

Query: 236 TKTELIGGSDIYMPVCRQHYVSGQVVV-EAARIVLESQKVQCG 277
            KTELIGG+D+YMPVCRQHYVSGQVV+ EA RIVLESQKVQCG
Sbjct: 239 KKTELIGGADVYMPVCRQHYVSGQVVIEEATRIVLESQKVQCG 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139492|ref|XP_002323138.1| predicted protein [Populus trichocarpa] gi|222867768|gb|EEF04899.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/222 (83%), Positives = 202/222 (90%)

Query: 57  PPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK 116
           P  F +Q R +HS++S+SS SGEIHVIVGPMFAGKTTTLL R+QAE   GRNVA+IKSNK
Sbjct: 5   PSNFPIQTRCVHSKSSLSSSSGEIHVIVGPMFAGKTTTLLHRVQAEINDGRNVAIIKSNK 64

Query: 117 DTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCRE 176
           D RYGLDS+VTHDGVKLPCCAL  LSSF+Q FG DAYDQ+DVIGIDEAQFF DLYDFCRE
Sbjct: 65  DNRYGLDSVVTHDGVKLPCCALPNLSSFKQSFGQDAYDQLDVIGIDEAQFFGDLYDFCRE 124

Query: 177 AADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEET 236
            ADHDGKTVIVAGLDGDYLRRSFGSV+DIIPLADSVTKL+ARCE CGKRAFFTLRKTEET
Sbjct: 125 VADHDGKTVIVAGLDGDYLRRSFGSVLDIIPLADSVTKLSARCEICGKRAFFTLRKTEET 184

Query: 237 KTELIGGSDIYMPVCRQHYVSGQVVVEAARIVLESQKVQCGS 278
           +TELIGG+D+YMPVCRQHYVSGQV VEAAR+VLESQK QCGS
Sbjct: 185 RTELIGGADVYMPVCRQHYVSGQVAVEAARMVLESQKAQCGS 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557967|ref|XP_003547281.1| PREDICTED: thymidine kinase-like [Glycine max]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/285 (68%), Positives = 226/285 (79%), Gaps = 19/285 (6%)

Query: 7   MKCLITPPFS-LTPISLHLSKATTLASKSCFLNPAT--SLR-NPKFI-HSMVSPRPPLFS 61
           MK L+ P FS L+P      KA+  A  S      T  S R NP+ I + ++   PP FS
Sbjct: 1   MKSLLNPKFSALSP------KASPFALFSLPSQSTTRFSFRSNPRRIPNRLLRLNPPPFS 54

Query: 62  -------LQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKS 114
                  +QNR+L +E S   PSGEIHVIVGPMFAGKTT+LLRRIQ+ET  GRNVA+IKS
Sbjct: 55  SNNFICAIQNRSLQTEPS-PPPSGEIHVIVGPMFAGKTTSLLRRIQSETANGRNVAIIKS 113

Query: 115 NKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFC 174
           +KDTRYGLDSIVTHDG KLPC AL  LSSF+QKFG DAY+++DVIGIDEAQFF+DLY+FC
Sbjct: 114 SKDTRYGLDSIVTHDGAKLPCWALANLSSFKQKFGMDAYEKLDVIGIDEAQFFDDLYEFC 173

Query: 175 REAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE 234
           R+AADHDGKTVIVAGLDG+YLRRSFGSV+DIIPLADSVTKLTARCE CGKRA FTLRKT+
Sbjct: 174 RQAADHDGKTVIVAGLDGNYLRRSFGSVLDIIPLADSVTKLTARCEICGKRACFTLRKTQ 233

Query: 235 ETKTELIGGSDIYMPVCRQHYVSGQVVVEAARIVLESQKVQCGSY 279
           + + ELIGG D+YMPVCRQHY SGQV +EA R VLES+KV+CGS+
Sbjct: 234 DKQIELIGGVDVYMPVCRQHYASGQVAMEATRHVLESKKVECGSH 278

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507780|gb|AFK41956.1| unknown [Lotus japonicus]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/279 (67%), Positives = 223/279 (79%), Gaps = 7/279 (2%)

Query: 7   MKCLITPPFS--LTPISLHLSKATTLASKSCFLNPATSLRNPKFIH---SMVSPRPPLFS 61
           MK ++ P  S  L+P     S        S F+ P  + R P  +    +  S R  + +
Sbjct: 1   MKSILNPKLSAALSPNLPKFSSFALFPRPSEFMTPFPT-RIPNHLRLNPTHFSSRNMIPT 59

Query: 62  LQNRNLHSEASVSSPS-GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRY 120
            QNR+L SE+S S+ S GEIHVIVGPMFAGKTT+L+RRIQ+E+  GRNVA+IKS+KDTRY
Sbjct: 60  TQNRSLQSESSASASSSGEIHVIVGPMFAGKTTSLIRRIQSESGNGRNVAIIKSSKDTRY 119

Query: 121 GLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADH 180
           GLDSIVTHDG KLPC AL  LSSF+QKFG DAY+Q+DVIGIDEAQFF+DLYDFCREAADH
Sbjct: 120 GLDSIVTHDGTKLPCWALANLSSFKQKFGVDAYEQLDVIGIDEAQFFDDLYDFCREAADH 179

Query: 181 DGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTEL 240
           DGKTV+VAGLDG+YLRR+FGSV+DIIPLADSVTKLTARCE CGK AFFTLRKT+ET+ EL
Sbjct: 180 DGKTVVVAGLDGNYLRRNFGSVLDIIPLADSVTKLTARCEICGKHAFFTLRKTQETQVEL 239

Query: 241 IGGSDIYMPVCRQHYVSGQVVVEAARIVLESQKVQCGSY 279
           IGG D+YMPVCRQHYV+GQV +E  R+VLESQKV+CGS+
Sbjct: 240 IGGVDVYMPVCRQHYVNGQVAMETTRLVLESQKVECGSH 278

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505560|ref|XP_004162508.1| PREDICTED: thymidine kinase-like [Cucumis sativus]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 172/220 (78%), Positives = 195/220 (88%)

Query: 55  PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKS 114
           P    FS QNRN    AS+S PSGEIHVI+GPMFAGKTTTLLRRIQ+E+  GR+VA+IKS
Sbjct: 19  PSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGKTTTLLRRIQSESCNGRSVAIIKS 78

Query: 115 NKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFC 174
           NKDTRYGLDSIVTHDG+KLPC A+  LSSF++KFG  +YD++DVIGIDEAQFF+DLYDFC
Sbjct: 79  NKDTRYGLDSIVTHDGMKLPCWAIPNLSSFKKKFGQGSYDKLDVIGIDEAQFFDDLYDFC 138

Query: 175 REAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE 234
            EAAD DGKTVIVAGLDGDYLRR+FGSV+DIIPLADSVTKLTARCE CG RAFFTLRKT+
Sbjct: 139 CEAADIDGKTVIVAGLDGDYLRRNFGSVLDIIPLADSVTKLTARCEICGNRAFFTLRKTQ 198

Query: 235 ETKTELIGGSDIYMPVCRQHYVSGQVVVEAARIVLESQKV 274
           E +TELIGG+D+YMPVCRQHYVSGQV +E AR V+ES+KV
Sbjct: 199 EKETELIGGADMYMPVCRQHYVSGQVAIETARTVVESRKV 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532644|ref|XP_003534881.1| PREDICTED: thymidine kinase-like [Glycine max]

 Score =  362 bits (930), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 186/282 (65%), Positives = 223/282 (79%), Gaps = 16/282 (5%)

Query: 7   MKCLITPPFS-LTPISLHLSKATTLASKSCFLNPATSLRNPKFIHSMV---SPRPP---- 58
           MK L+ P FS L+P +   +  +  +S+  F +      NP+ I + +   +P P     
Sbjct: 1   MKSLLNPKFSALSPKASPFALFSLPSSRFSFRS------NPRRIPNRLLRLNPSPCSSNN 54

Query: 59  -LFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKD 117
              ++QNR+L +E S   PSGEIHVIVGPMFAGKTT+LLRRIQ+ET  GRNVA+IKS+KD
Sbjct: 55  FCCTIQNRSLQTEPS-PPPSGEIHVIVGPMFAGKTTSLLRRIQSETTNGRNVAIIKSSKD 113

Query: 118 TRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREA 177
           TRYGLDSIVTHDG +LPC AL  LSSF+QKFG DAY+++DVIGIDEAQFF+DLY+FC +A
Sbjct: 114 TRYGLDSIVTHDGAELPCWALENLSSFKQKFGIDAYEKLDVIGIDEAQFFDDLYEFCLQA 173

Query: 178 ADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETK 237
           ADHDGKTVIVAGLDG+YLRRSFGSV+DIIPLADSVTKLTARCE CGKRA FTLRKT++ +
Sbjct: 174 ADHDGKTVIVAGLDGNYLRRSFGSVLDIIPLADSVTKLTARCEICGKRACFTLRKTQDKQ 233

Query: 238 TELIGGSDIYMPVCRQHYVSGQVVVEAARIVLESQKVQCGSY 279
            ELIGG D+YMPVCRQHYVSGQV +EA R VLES KV+C S+
Sbjct: 234 IELIGGVDVYMPVCRQHYVSGQVAMEATRHVLESHKVECASH 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086509|ref|XP_002307900.1| predicted protein [Populus trichocarpa] gi|222853876|gb|EEE91423.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (930), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 169/192 (88%), Positives = 179/192 (93%)

Query: 78  GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCA 137
           GEIHVIVGPMFAGKTTTLL R+QAE   GRNVA+IKSNKD RYGLDS+ THDGVKLPCCA
Sbjct: 1   GEIHVIVGPMFAGKTTTLLHRVQAEINDGRNVAIIKSNKDNRYGLDSVATHDGVKLPCCA 60

Query: 138 LTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRR 197
           L  LSSFRQK G DAYDQ+DVIGIDEAQFFEDLYDFCRE ADHDGKTVIVAGLDGDYLRR
Sbjct: 61  LPNLSSFRQKLGQDAYDQLDVIGIDEAQFFEDLYDFCREVADHDGKTVIVAGLDGDYLRR 120

Query: 198 SFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCRQHYVS 257
           SFGSV+DIIPLADSVTKL+ARCE CGKRAFFTLRKTEET+TELIGG+D+YMPVCRQHYVS
Sbjct: 121 SFGSVLDIIPLADSVTKLSARCEICGKRAFFTLRKTEETQTELIGGADVYMPVCRQHYVS 180

Query: 258 GQVVVEAARIVL 269
           GQV VEAAR+VL
Sbjct: 181 GQVAVEAARMVL 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443536|ref|XP_004139533.1| PREDICTED: thymidine kinase-like [Cucumis sativus]

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 168/220 (76%), Positives = 191/220 (86%)

Query: 55  PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKS 114
           P    FS QNRN    AS+S PSGEIHVI+GPMFAGKTTTLLRRIQ+E+  GR+VA+IKS
Sbjct: 19  PSKGFFSTQNRNPQMRASLSPPSGEIHVILGPMFAGKTTTLLRRIQSESCNGRSVAIIKS 78

Query: 115 NKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFC 174
           NKDTRYGLDSIVTHDG+KLPC A+  LSSF++KFG  +YD++DVIGIDEAQFF+DLYDFC
Sbjct: 79  NKDTRYGLDSIVTHDGMKLPCWAIPNLSSFKKKFGQGSYDKLDVIGIDEAQFFDDLYDFC 138

Query: 175 REAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE 234
            EAAD DGKTVIVAGLD    RR+FGSV+DIIPLADSVTKLTARCE CG RAFFTLRKT+
Sbjct: 139 CEAADIDGKTVIVAGLDXXXXRRNFGSVLDIIPLADSVTKLTARCEICGNRAFFTLRKTQ 198

Query: 235 ETKTELIGGSDIYMPVCRQHYVSGQVVVEAARIVLESQKV 274
           E +TELIGG+D+YMPVCRQHYVSGQV +E AR V+ES+KV
Sbjct: 199 EKETELIGGADMYMPVCRQHYVSGQVAIETARTVVESRKV 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485880|ref|XP_003633348.1| PREDICTED: thymidine kinase-like [Vitis vinifera]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 161/203 (79%), Positives = 181/203 (89%)

Query: 71  ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG 130
            S+    GE+HVIVGPMFAGKTT LLRRI++E+  GRNVA+IKS+KDTRY  DSIVTHDG
Sbjct: 17  GSIHRALGEVHVIVGPMFAGKTTALLRRIKSESNNGRNVAMIKSSKDTRYATDSIVTHDG 76

Query: 131 VKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGL 190
           VK PC AL  LSSFRQKFG++AY++++VIGIDEAQFFEDLYDFC E ADHDGKTVIVAGL
Sbjct: 77  VKFPCWALPDLSSFRQKFGAEAYEKLEVIGIDEAQFFEDLYDFCCEVADHDGKTVIVAGL 136

Query: 191 DGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPV 250
           DGDYLRRSFGSV+D+IPLADSVTKLTARCE CGKRAFFTLRK EE +TELIGG+DIYMPV
Sbjct: 137 DGDYLRRSFGSVLDVIPLADSVTKLTARCELCGKRAFFTLRKIEEMQTELIGGADIYMPV 196

Query: 251 CRQHYVSGQVVVEAARIVLESQK 273
           CRQHYV+GQ V+EAAR  LES+K
Sbjct: 197 CRQHYVNGQAVIEAARNALESRK 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586437|ref|XP_002533863.1| thymidine kinase, putative [Ricinus communis] gi|223526185|gb|EEF28513.1| thymidine kinase, putative [Ricinus communis]

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 160/208 (76%), Positives = 183/208 (87%), Gaps = 2/208 (0%)

Query: 74  SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKL 133
           + P+GE+HVIVGPMFAGKTT LLRRI +E   GRNVA+IKS+KDTRY  DS+VTHDG+K 
Sbjct: 20  NKPAGEVHVIVGPMFAGKTTALLRRINSEGSNGRNVAMIKSSKDTRYARDSVVTHDGLKF 79

Query: 134 PCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGD 193
           PC AL  LSSFR K G DAY ++DVIGIDEAQFFEDLYDFC +AADHDGKTVIVAGLDGD
Sbjct: 80  PCWALPDLSSFRDKLGHDAYQRIDVIGIDEAQFFEDLYDFCSKAADHDGKTVIVAGLDGD 139

Query: 194 YLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCRQ 253
           YLRRSFGSV+D+IPLAD+VTKLTARCE CGKRAFFTLRKT ET+TELIGG+D+YMPVCR+
Sbjct: 140 YLRRSFGSVLDVIPLADNVTKLTARCELCGKRAFFTLRKTAETQTELIGGADMYMPVCRR 199

Query: 254 HYVSGQVVVEAARIVL--ESQKVQCGSY 279
           HYV+GQVV+EAAR VL  +S K+Q  S+
Sbjct: 200 HYVNGQVVMEAARNVLVADSCKLQPDSH 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
TAIR|locus:2178297	282	TK1b "AT5G23070" [Arabidopsis	0.925	0.918	0.588	1.3e-75
TAIR|locus:2077382	238	TK1a "AT3G07800" [Arabidopsis	0.728	0.857	0.648	5.5e-70
MGI|MGI:98763	233	Tk1 "thymidine kinase 1" [Mus	0.614	0.738	0.462	4.1e-33
UNIPROTKB|P04047	224	TK1 "Thymidine kinase, cytosol	0.625	0.781	0.427	1.4e-32
UNIPROTKB|P04183	234	TK1 "Thymidine kinase, cytosol	0.635	0.760	0.448	2.3e-32
UNIPROTKB|A5D7R8	238	TK1 "Thymidine kinase, cytosol	0.646	0.760	0.441	6e-32
UNIPROTKB|P09768	234	TK1 "Thymidine kinase, cytosol	0.621	0.743	0.443	7.7e-32
UNIPROTKB|K7ERV3	267	TK1 "Thymidine kinase" [Homo s	0.535	0.561	0.460	1.8e-31
DICTYBASE|DDB_G0289179	227	thyB "calmodulin-binding prote	0.635	0.784	0.432	5.4e-31
ZFIN|ZDB-GENE-030131-5801	236	tk1 "thymidine kinase 1, solub	0.632	0.75	0.424	5.4e-31

TAIR|locus:2178297 TK1b "AT5G23070" [Arabidopsis thaliana (taxid:3702)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 160/272 (58%), Positives = 200/272 (73%)

Query:     7 MKCLITPPFSLTPISLHLSKATTLASKSCF---LNPATSLRNPKFIHSMVSPRPPLFSLQ 63
             M+ LI+P  SL P SLHL K +  ++   F   +N  T   +P    S +S R  L +  
Sbjct:     6 MRTLISP--SLAPFSLHLHKPSLFSTALRFSFSINNITPTNSPP---STISTRK-LQTKA 59

Query:    64 NRNLHSEAS--VSSPS-GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRY 120
              R   S +S  +SS S GEIHV+VGPMF+GKTTTLLRRI AE + G+ +A+IKSNKDTRY
Sbjct:    60 TRVTSSSSSQPLSSSSPGEIHVVVGPMFSGKTTTLLRRILAERETGKRIAIIKSNKDTRY 119

Query:   121 GLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYD-QVDVIGIDEAQFFEDLYDFCREAAD 179
               +SIVTHDG K PC +L  LSSF+++FG D Y+ ++DVIGIDEAQFF DLY+FCREAAD
Sbjct:   120 CTESIVTHDGEKYPCWSLPDLSSFKERFGFDDYENRLDVIGIDEAQFFGDLYEFCREAAD 179

Query:   180 HDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXX 239
              +GKTVIVAGLDGD++RR FGSV+D+IP+AD+VTKLT+RCE CGKRA FT+R        
Sbjct:   180 KEGKTVIVAGLDGDFMRRRFGSVLDLIPIADTVTKLTSRCEVCGKRALFTMRKTEEKETE 239

Query:   240 LIGGSDIYMPVCRQHYVSGQVVVEAARIVLES 271
             LIGG+++YMPVCR HYV GQ V+E AR VL+S
Sbjct:   240 LIGGAEVYMPVCRSHYVCGQNVLETARAVLDS 271

GO:0004797 "thymidine kinase activity" evidence=ISS;IDA

GO:0009165 "nucleotide biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2077382 TK1a "AT3G07800" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 133/205 (64%), Positives = 167/205 (81%)

Query:    77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC 136
             SG +HVI+GPMF+GK+T+LLRRI++E   GR+VA++KS+KDTRY  DS+VTHDG+  PC 
Sbjct:    30 SGAVHVIMGPMFSGKSTSLLRRIKSEISDGRSVAMLKSSKDTRYAKDSVVTHDGIGFPCW 89

Query:   137 ALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLR 196
             AL  L SF +KFG DAY+++DVIGIDEAQFF DLY+FC + AD DGK VIVAGLDGDYLR
Sbjct:    90 ALPDLMSFPEKFGLDAYNKLDVIGIDEAQFFGDLYEFCCKVADDDGKIVIVAGLDGDYLR 149

Query:   197 RSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXLIGGSDIYMPVCRQHYV 256
             RSFG+V+DIIP+ADSVTKLTARCE CG +AFFTLR        LIGG+D+YMPVCR+HY+
Sbjct:   150 RSFGAVLDIIPIADSVTKLTARCEVCGHKAFFTLRKNCDTRTELIGGADVYMPVCRKHYI 209

Query:   257 SGQVVVEAARIVLE-SQKVQCGSYV 280
             +  +V++A++ VLE S K +  S V
Sbjct:   210 TNHIVIKASKKVLEDSDKARAESCV 234

GO:0004797 "thymidine kinase activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009165 "nucleotide biosynthetic process" evidence=IEA;ISS

MGI|MGI:98763 Tk1 "thymidine kinase 1" [Mus musculus (taxid:10090)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 87/188 (46%), Positives = 115/188 (61%)

Query:    74 SSPS---GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG 130
             SSPS   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY  +S  THD 
Sbjct:    12 SSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-NSFSTHDR 70

Query:   131 VK---LPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIV 187
                  LP C L  ++  ++  G      V VIGIDE QFF D+ DFC   A+ +GKTVIV
Sbjct:    71 NTMDALPACMLRDVT--QESLG------VAVIGIDEGQFFPDIVDFCEMMAN-EGKTVIV 121

Query:   188 AGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXLIGGSDIY 247
             A LDG + R++FGS+++++PLA+SV KLTA C  C + A +T R        +IGG+D Y
Sbjct:   122 AALDGTFQRKAFGSILNLVPLAESVVKLTAVCMECFREAAYTKRLGLEKEVEVIGGADKY 181

Query:   248 MPVCRQHY 255
               VCR  Y
Sbjct:   182 HSVCRLCY 189

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004797 "thymidine kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0009165 "nucleotide biosynthetic process" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0046104 "thymidine metabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=ISO

UNIPROTKB|P04047 TK1 "Thymidine kinase, cytosolic" [Gallus gallus (taxid:9031)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 80/187 (42%), Positives = 111/187 (59%)

Query:    72 SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGV 131
             S   P G+I VI GPMF+GK+T L+RR++          ++K  KDTRY    + THD  
Sbjct:    13 SPGRPRGQIQVIFGPMFSGKSTELMRRVRRFQLAQYRCLLVKYAKDTRYCTTGVSTHDRN 72

Query:   132 KL---PCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVA 188
              +   P CAL  +  +++  GS       VIGIDE QFF D+ +FC + A+  GKTVIVA
Sbjct:    73 TMEARPACALQDV--YQEALGSA------VIGIDEGQFFPDIVEFCEKMAN-TGKTVIVA 123

Query:   189 GLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXLIGGSDIYM 248
              LDG + R++FGS+++++PLA+SV KL A C  C + A +T R        +IGG+D Y 
Sbjct:   124 ALDGTFQRKAFGSILNLVPLAESVVKLNAVCMECYREASYTKRLGAEREVEVIGGADKYH 183

Query:   249 PVCRQHY 255
              VCR  Y
Sbjct:   184 SVCRACY 190

GO:0005524 "ATP binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0004797 "thymidine kinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISS

UNIPROTKB|P04183 TK1 "Thymidine kinase, cytosolic" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 87/194 (44%), Positives = 114/194 (58%)

Query:    72 SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG- 130
             S S   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY   S  THD  
Sbjct:    13 SPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRN 71

Query:   131 --VKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVA 188
                 LP C L  ++  ++  G      V VIGIDE QFF D+ +FC EA  + GKTVIVA
Sbjct:    72 TMEALPACLLRDVA--QEALG------VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIVA 122

Query:   189 GLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXLIGGSDIYM 248
              LDG + R+ FG++++++PLA+SV KLTA C  C + A +T R        +IGG+D Y 
Sbjct:   123 ALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYH 182

Query:   249 PVCRQHY---VSGQ 259
              VCR  Y    SGQ
Sbjct:   183 SVCRLCYFKKASGQ 196

GO:0005524 "ATP binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0004797 "thymidine kinase activity" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0014856 "skeletal muscle cell proliferation" evidence=IEA

GO:0031667 "response to nutrient levels" evidence=IEA

GO:0046104 "thymidine metabolic process" evidence=IEA

GO:0046688 "response to copper ion" evidence=IEA

GO:0048565 "digestive tract development" evidence=IEA

GO:0051414 "response to cortisol stimulus" evidence=IEA

GO:0060138 "fetal process involved in parturition" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IPI

GO:0008270 "zinc ion binding" evidence=IDA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=TAS

GO:0019206 "nucleoside kinase activity" evidence=EXP

GO:0043097 "pyrimidine nucleoside salvage" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0009165 "nucleotide biosynthetic process" evidence=EXP

UNIPROTKB|A5D7R8 TK1 "Thymidine kinase, cytosolic" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 87/197 (44%), Positives = 113/197 (57%)

Query:    72 SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG- 130
             S S   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY      THD  
Sbjct:    13 SPSKTRGQIQVILGPMFSGKSTELMRRVRRFQVAQYKCLVIKYAKDTRYS-SLFSTHDRN 71

Query:   131 --VKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVA 188
                 LP C L  +         DA  +V VIGIDE QFF D+ +FC   A+  GKTVIVA
Sbjct:    72 TMEALPACLLRDVIQ-------DA-QRVAVIGIDEGQFFPDIVEFCENMAN-SGKTVIVA 122

Query:   189 GLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXLIGGSDIYM 248
              LDG + R++FG++++++PLA+SV KLTA C  C + A +T R        +IGG+D Y 
Sbjct:   123 ALDGTFQRKAFGTILNLVPLAESVVKLTAVCMECFREAAYTKRLGVEKEVEVIGGADKYH 182

Query:   249 PVCRQHY---VSGQVVV 262
              VCR  Y    SGQ  V
Sbjct:   183 SVCRLCYFKKASGQPAV 199

GO:0008270 "zinc ion binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0004797 "thymidine kinase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P09768 TK1 "Thymidine kinase, cytosolic" [Cricetulus griseus (taxid:10029)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 83/187 (44%), Positives = 111/187 (59%)

Query:    72 SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGV 131
             S S   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY   S  THD  
Sbjct:    13 SPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQNKCLVIKYAKDTRYS-SSFSTHDRN 71

Query:   132 K---LPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVA 188
                 LP C L  ++  ++  G+       VIGIDE QFF D+ +FC E   + GKTVIVA
Sbjct:    72 TMDALPACLLRDVA--QEALGAA------VIGIDEGQFFPDIVEFC-EVMANAGKTVIVA 122

Query:   189 GLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXLIGGSDIYM 248
              LDG + R++FGS+++++PLA+SV KLTA C  C + A +T R        +IGG+D Y 
Sbjct:   123 ALDGTFQRKAFGSILNLVPLAESVVKLTAVCMECFREAAYTKRLGLEKEVEVIGGADKYH 182

Query:   249 PVCRQHY 255
              VCR  Y
Sbjct:   183 SVCRVCY 189

GO:0008270 "zinc ion binding" evidence=ISS

UNIPROTKB|K7ERV3 TK1 "Thymidine kinase" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
 Identities = 75/163 (46%), Positives = 100/163 (61%)

Query:    72 SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG- 130
             S S   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY   S  THD  
Sbjct:    13 SPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRN 71

Query:   131 --VKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVA 188
                 LP C L  ++  ++  G      V VIGIDE QFF D+ +FC EA  + GKTVIVA
Sbjct:    72 TMEALPACLLRDVA--QEALG------VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIVA 122

Query:   189 GLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLR 231
              LDG + R+ FG++++++PLA+SV KLTA C  C + A +T R
Sbjct:   123 ALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKR 165

GO:0005524 "ATP binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0004797 "thymidine kinase activity" evidence=IEA

DICTYBASE|DDB_G0289179 thyB "calmodulin-binding protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 84/194 (43%), Positives = 109/194 (56%)

Query:    73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG--LDS--IVTH 128
             V+  +G+I VI GPMF+GKTT L+RRI+      +   +IK +KDTRY   +D   +VTH
Sbjct:     3 VTQIAGKIQVIFGPMFSGKTTELIRRIKRFNFANKKCLLIKYSKDTRYNDNIDKSFLVTH 62

Query:   129 DGVK---LPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTV 185
             D       PC  L  +    Q +        DVIGIDE QFF D+  F  + A+  GKTV
Sbjct:    63 DKQNYQAFPCSILEDVKEQAQNY--------DVIGIDEGQFFPDVVQFSEDLANQ-GKTV 113

Query:   186 IVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXLIGGSD 245
             I+A LDG + R+ F SVID++  A+ +TKLTA C  C   A F+ R        LIGG D
Sbjct:   114 IIAALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESDDIELIGGID 173

Query:   246 IYMPVCRQHYVSGQ 259
              Y+ VCR  Y S Q
Sbjct:   174 KYISVCRGCYNSDQ 187

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IDA

GO:0004797 "thymidine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005516 "calmodulin binding" evidence=IEA;IPI

GO:0004683 "calmodulin-dependent protein kinase activity" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-030131-5801 tk1 "thymidine kinase 1, soluble" [Danio rerio (taxid:7955)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 76/179 (42%), Positives = 106/179 (59%)

Query:    78 GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC- 136
             G+I VI GPMF+GK+T L+RR++       +  +IK  KDTRY    + THD  +     
Sbjct:    19 GQIQVIFGPMFSGKSTELMRRVRRFQVAQYSCLLIKYAKDTRYSCTGMATHDMYEQEIVN 78

Query:   137 ALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLR 196
              +  + + R +  +    Q  VIGIDE QFF D  +FC E A+  GKT+IVA LDG + R
Sbjct:    79 TMEAVPANRLRDVAPLALQACVIGIDEGQFFPDTVEFCEEMANM-GKTIIVAALDGTFQR 137

Query:   197 RSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXLIGGSDIYMPVCRQHY 255
             ++FG++++++PLA+SV KL A C  C K A +T R        +IGGSD Y  VCR  Y
Sbjct:   138 KAFGNILNLVPLAESVVKLNAVCMQCFKEAAYTKRLGAEKEVEVIGGSDKYHAVCRCCY 196

GO:0005524 "ATP binding" evidence=IEA

GO:0004797 "thymidine kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81263	KITH_ORYSJ	2, ., 7, ., 1, ., 2, 1	0.7560	0.725	0.7490	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.21	0.946
3rd Layer	2.7.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	280
pfam00265	175	pfam00265, TK, Thymidine kinase	3e-67
PTZ00293	211	PTZ00293, PTZ00293, thymidine kinase; Provisional	1e-65
PRK04296	190	PRK04296, PRK04296, thymidine kinase; Provisional	9e-53
COG1435	201	COG1435, Tdk, Thymidine kinase [Nucleotide transpo	2e-47

>gnl|CDD|215828 pfam00265, TK, Thymidine kinase

 Score =  206 bits (526), Expect = 3e-67
 Identities = 80/180 (44%), Positives = 110/180 (61%), Gaps = 7/180 (3%)

Query: 78  GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLP--C 135
           G I +I+GPMF+GK+T L+RR+           VIK   D RYG   +VTHDG+ +    
Sbjct: 1   GSIELIIGPMFSGKSTELIRRVYRYQLAQYKCVVIKYAIDNRYGTGKVVTHDGISMEAKL 60

Query: 136 CALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYL 195
              + L   +        + + V+GIDEAQFF+D+ +FC   A+  GK VIVAGLDGD+ 
Sbjct: 61  IKTSLLDDIKDIIS----NTIHVVGIDEAQFFDDIVEFCETMAN-LGKIVIVAGLDGDFQ 115

Query: 196 RRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCRQHY 255
           R+ FG++++++PLA+ VTKL A C  C K A FT R   E +  LIGGSD Y+ VCR+ Y
Sbjct: 116 RKPFGNILNLLPLAEKVTKLKAVCMKCYKDASFTKRLNNEKEIILIGGSDKYVSVCRKCY 175

Length = 175

>gnl|CDD|185542 PTZ00293, PTZ00293, thymidine kinase; Provisional

 Score =  203 bits (519), Expect = 1e-65
 Identities = 87/211 (41%), Positives = 116/211 (54%), Gaps = 24/211 (11%)

Query: 78  GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDS-IVTHDGVKL--- 133
           G I VI+GPMF+GKTT L+R ++  T   +   VIK +KDTRY  +  I +HD   L   
Sbjct: 4   GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTRYSDEQNISSHDKQMLKAI 63

Query: 134 PCCALTTLSSFRQKFGSDAYDQV---DVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGL 190
               L            +  +     DVI IDE QFF DL +F   AA+  GK VIVA L
Sbjct: 64  KVSKLK-----------EVLETAKNYDVIAIDEGQFFPDLVEFSEAAAN-LGKIVIVAAL 111

Query: 191 DGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPV 250
           DG + R+ FG ++++IPLA+ VTKLTA C FCGK A F+ R  +  + ELIGG D Y+  
Sbjct: 112 DGTFQRKPFGQILNLIPLAERVTKLTAVCMFCGKEASFSKRIVQSEQIELIGGEDKYIAT 171

Query: 251 CRQHYVSGQVVVEAARIVLESQK-VQCGSYV 280
           CR+ + + Q     A   LE Q  V+   + 
Sbjct: 172 CRKCFRTKQ----LAEKELEKQDLVEFADFS 198

Length = 211

>gnl|CDD|235272 PRK04296, PRK04296, thymidine kinase; Provisional

 Score =  169 bits (432), Expect = 9e-53
 Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 10/191 (5%)

Query: 77  SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC 136
             ++  I G M +GK+T LL+R     ++G  V V K   D RYG   +V+  G+     
Sbjct: 1   MAKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAI 60

Query: 137 ALTTLSSFRQKFGSDAYDQVDVIGIDEAQFF--EDLYDFCREAADHDGKTVIVAGLDGDY 194
            +++ +   +    +  +++D + IDEAQF   E +        D  G  VI  GLD D+
Sbjct: 61  PVSSDTDIFELI-EEEGEKIDCVLIDEAQFLDKEQVVQLAEVLDD-LGIPVICYGLDTDF 118

Query: 195 LRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE------ETKTELIGGSDIYM 248
               F     ++ LAD VT+L A C  CG++A    R  +      E    L+GG++ Y 
Sbjct: 119 RGEPFEGSPYLLALADKVTELKAICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYE 178

Query: 249 PVCRQHYVSGQ 259
            VCR+HY    
Sbjct: 179 AVCRKHYKEAL 189

Length = 190

>gnl|CDD|224352 COG1435, Tdk, Thymidine kinase [Nucleotide transport and metabolism]

 Score =  156 bits (397), Expect = 2e-47
 Identities = 67/189 (35%), Positives = 92/189 (48%), Gaps = 8/189 (4%)

Query: 76  PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPC 135
             G +  I GPMF+GKT  LLRR +   + G  V V K   DTRYG+  + +  G+    
Sbjct: 2   KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEA 61

Query: 136 CALTTLSSFRQKFGSDAYDQ-VDVIGIDEAQFF-EDLYDFCREAADHDGKTVIVAGLDGD 193
             + + +    +  +      VD + IDEAQFF E+L     E AD  G  VI  GLD D
Sbjct: 62  VVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDEELVYVLNELADRLGIPVICYGLDTD 121

Query: 194 YLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETK------TELIGGSDIY 247
           +    F     ++ +AD VTKL A C  CG++A  TLR              LIGG++ Y
Sbjct: 122 FRGEPFEGSKYLLAIADKVTKLKAICNVCGRKATRTLRLINGGPAVYEGPQILIGGNESY 181

Query: 248 MPVCRQHYV 256
              CR+H+ 
Sbjct: 182 EARCRKHHK 190

Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.98
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.97
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.97
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.97
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.97
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.97
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.97
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.97
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.97
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.97
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.97
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.97
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.97
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.97
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.97
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.97
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.97
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.97
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.97
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.97
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.97
COG4559	259	ABC-type hemin transport system, ATPase component	99.97
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.97
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.96
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.96
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.96
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.96
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.96
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.96
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.96
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.96
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.96
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.96
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.96
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.96
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.96
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.96
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.96
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.96
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.96
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.96
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.96
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.96
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.96
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.96
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.96
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.96
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.96
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.96
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.96
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.96
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.96
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.96
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.96
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.96
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.96
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.96
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.96
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.96
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.96
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.96
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.96
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.96
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.96
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.96
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.96
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.96
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.96
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.96
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.96
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.96
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.96
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.96
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.96
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.96
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.96
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.96
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.96
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.96
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.96
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.96
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.96
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.96
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.96
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.96
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.96
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.95
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.95
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK10908	222	cell division protein FtsE; Provisional	99.95
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.95
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.95
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.95
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.95
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.95
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.95
COG1123	539	ATPase components of various ABC-type transport sy	99.95
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.95
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.95
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.95
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.95
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.95
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.95
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.95
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.95
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.95
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.95
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.95
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.95
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.95
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.95
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.95
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.95
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.95
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.95
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.95
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.95
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.95
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.95
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.95
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.95
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.95
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.95
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.95
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.95
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.95
COG1123	539	ATPase components of various ABC-type transport sy	99.95
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK10938	490	putative molybdenum transport ATP-binding protein	99.95
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.95
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.95
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.95
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.95
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.95
cd03246	173	ABCC_Protease_Secretion This family represents the	99.95
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.95
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.95
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.95
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.95
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.95
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.95
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.95
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.95
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.95
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.95
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.95
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.94
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.94
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.94
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.94
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.94
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.94
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.94
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.94
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.94
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.94
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.94
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.94
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.94
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.94
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.94
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.94
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.94
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.94
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.94
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.94
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.94
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.94
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.94
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.94
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.94
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.94
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.94
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.94
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.94
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.94
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.94
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.94
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.93
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.93
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.93
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.93
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.93
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.93
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.93
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.93
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.93
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.93
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.93
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.93
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.93
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.93
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.93
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.93
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.93
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.93
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.93
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.93
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.93
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.93
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.93
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.93
PRK10938	490	putative molybdenum transport ATP-binding protein	99.93
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.93
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.93
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.93
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.92
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.92
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.92
COG4181	228	Predicted ABC-type transport system involved in ly	99.92
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.92
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.92
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.92
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.92
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.92
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.92
COG4172	534	ABC-type uncharacterized transport system, duplica	99.92
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.92
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.92
PRK13409	590	putative ATPase RIL; Provisional	99.92
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.92
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.92
COG4172	534	ABC-type uncharacterized transport system, duplica	99.92
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.92
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.92
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.92
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.92
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.92
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.92
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.92
PTZ00293	211	thymidine kinase; Provisional	99.92
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.91
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.91
COG4987	573	CydC ABC-type transport system involved in cytochr	99.91
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.91
PRK11147	635	ABC transporter ATPase component; Reviewed	99.91
COG0488	530	Uup ATPase components of ABC transporters with dup	99.91
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.91
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.91
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.91
PRK11147	635	ABC transporter ATPase component; Reviewed	99.91
PLN03211	659	ABC transporter G-25; Provisional	99.91
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.91
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.91
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.91
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.91
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.91
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.91
PLN03073	718	ABC transporter F family; Provisional	99.91
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.91
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.91
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.91
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.91
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.9
COG4988	559	CydD ABC-type transport system involved in cytochr	99.9
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.9
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.9
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.9
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.9
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.9
PLN03073	718	ABC transporter F family; Provisional	99.9
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.9
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.9
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.9
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.9
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.9
COG0488	530	Uup ATPase components of ABC transporters with dup	99.9
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.89
PLN03130	1622	ABC transporter C family member; Provisional	99.89
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.89
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.89
PLN03232	1495	ABC transporter C family member; Provisional	99.89
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.89
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.89
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.89
KOG3125	234	consensus Thymidine kinase [Nucleotide transport a	99.89
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.88
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.88
PTZ00243	1560	ABC transporter; Provisional	99.88
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.88
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.88
PF00265	176	TK: Thymidine kinase; InterPro: IPR001267 Thymidin	99.88
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.88
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.88
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.87
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.87
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.87
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.87
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.87
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.86
PRK13409	590	putative ATPase RIL; Provisional	99.86
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.86
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.86
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.86
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.85
PLN03232	1495	ABC transporter C family member; Provisional	99.85
PRK04296	190	thymidine kinase; Provisional	99.85
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.85
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.85
PLN03140	1470	ABC transporter G family member; Provisional	99.85
PLN03130	1622	ABC transporter C family member; Provisional	99.85
COG1435	201	Tdk Thymidine kinase [Nucleotide transport and met	99.84
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.84
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.83
KOG0062	582	consensus ATPase component of ABC transporters wit	99.82
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.82
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.82
PLN03140	1470	ABC transporter G family member; Provisional	99.81
PTZ00243	1560	ABC transporter; Provisional	99.81
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.81
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.79
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.78
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.78
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.78
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.78
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.77
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.77
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.77
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.76
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.76
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.76
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.73
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.73
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.71
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.7
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.7
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.69
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.68
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.67
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.67
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.67
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.67
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.66
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.66
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.65
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.64
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.64
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.64
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.63
COG4178	604	ABC-type uncharacterized transport system, permeas	99.62
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.62
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.62
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.62
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.6
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.57
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.57
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.54
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.53
KOG0062	582	consensus ATPase component of ABC transporters wit	99.52
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.51
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.51
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.5
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.48
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.41
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.39
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.38
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.38
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.37
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.36
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.33
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.3
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.28
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.27
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.24
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.22
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.18
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.12
PRK13695	174	putative NTPase; Provisional	99.09
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.08
PRK06067	234	flagellar accessory protein FlaH; Validated	99.01
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	99.0
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.99
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.97
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	98.96
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.95
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.9
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.85
COG3910	233	Predicted ATPase [General function prediction only	98.82
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.8
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.8
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.8
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.78
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.7
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.65
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.64
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.64
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.63
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.59
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.57
TIGR00767	415	rho transcription termination factor Rho. Members	98.55
smart00382	148	AAA ATPases associated with a variety of cellular	98.54
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.53
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.47
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	98.45
PRK09183	259	transposase/IS protein; Provisional	98.44
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.44
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.4
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.4
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.39
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	98.39
PRK11823	446	DNA repair protein RadA; Provisional	98.38
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.38
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.35
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.32
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.32
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.3
PRK13764	602	ATPase; Provisional	98.29
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.27
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	98.25
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.24
TIGR02237	209	recomb_radB DNA repair and recombination protein R	98.24
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	98.24
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.23
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	98.23
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	98.21
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.2
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.2
PRK10416	318	signal recognition particle-docking protein FtsY;	98.18
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.17
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.15
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	98.14
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.14
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.13
cd01128	249	rho_factor Transcription termination factor rho is	98.12
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.12
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.11
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	98.11
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.11
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	98.09
PF00004	132	AAA: ATPase family associated with various cellula	98.05
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.05
PF13173	128	AAA_14: AAA domain	98.04
PRK09302	509	circadian clock protein KaiC; Reviewed	98.03
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	98.02
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.01
PRK06893	229	DNA replication initiation factor; Validated	97.99
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.99
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	97.98
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	97.98
PRK09825	176	idnK D-gluconate kinase; Provisional	97.97
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	97.97
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	97.97

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-38  Score=274.40  Aligned_cols=171  Identities=19%  Similarity=0.196  Sum_probs=138.4

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC-------Cccccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS-------NKDTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~-------~~~~~~~~  122 (280)
                      ++|+++||+|+||+..+|+|||++|.+||+++|+||||||||||| |+|++|.. ++..|.+-..       -...|..+
T Consensus         1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlL-RclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v   79 (240)
T COG1126           1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLL-RCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV   79 (240)
T ss_pred             CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHH-HHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence            379999999999999999999999999999999999999999999 99999843 3333332221       12236667


Q ss_pred             ceeeeeccccccc----------------------------ccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          123 DSIVTHDGVKLPC----------------------------CALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       123 ~~v~~~~~~~~~~----------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      +.+||+.+++...                            +..+++.+.++.|              ||||+.+|+++|
T Consensus        80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmL  159 (240)
T COG1126          80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVML  159 (240)
T ss_pred             CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEe
Confidence            8888876643221                            2233444444433              689999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT  233 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~  233 (280)
                      +||||+++      ++++.+++++++ |.|+|+|||++.+|.+          +||||++|++ +++..|+|++++.++.
T Consensus       160 FDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~FAr~----------VadrviFmd~G~iie~g~p~~~f~~p~  228 (240)
T COG1126         160 FDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGFARE----------VADRVIFMDQGKIIEEGPPEEFFDNPK  228 (240)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHHHHH----------hhheEEEeeCCEEEEecCHHHHhcCCC
Confidence            99999986      489999999997 9999999999999997          9999999999 8999999999995443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=1.6e-38  Score=284.01  Aligned_cols=179  Identities=22%  Similarity=0.286  Sum_probs=144.4

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------C------------CeeEEE
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------K------------GRNVAV  111 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~------------g~~i~~  111 (280)
                      +|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..        +            .+.++|
T Consensus         2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLL-k~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~   80 (258)
T COG1120           2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLL-KCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY   80 (258)
T ss_pred             eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHH-HHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence            68999999999999999999999999999999999999999999 99999621        2            346788


Q ss_pred             ecCCccccccc--ceeeee-----cc-----------cccccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563          112 IKSNKDTRYGL--DSIVTH-----DG-----------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVI  159 (280)
Q Consensus       112 ~~~~~~~~~~~--~~v~~~-----~~-----------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lL  159 (280)
                      ++|......++  ..++..     ..           ....++...++.+++++.              |+||+++|++|
T Consensus        81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL  160 (258)
T COG1120          81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL  160 (258)
T ss_pred             eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence            88875433221  111110     00           011223445566665554              78999999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK  232 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~  232 (280)
                      ||||||+.+      +++++++++++++|+|||+++||++.|.+          +||++++|++ ++++.|+|++++   
T Consensus       161 LLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~r----------yad~~i~lk~G~i~a~G~p~evl---  227 (258)
T COG1120         161 LLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAAR----------YADHLILLKDGKIVAQGTPEEVL---  227 (258)
T ss_pred             EeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEEECCeEEeecCcchhc---
Confidence            999998765      58999999998889999999999999997          9999999999 999999999999   


Q ss_pred             cCCCcEEEeCCc
Q 023563          233 TEETKTELIGGS  244 (280)
Q Consensus       233 ~~~~~~~~~~~~  244 (280)
                      +.+.+.++|+..
T Consensus       228 T~e~l~~Vygv~  239 (258)
T COG1120         228 TEENLREVYGVD  239 (258)
T ss_pred             CHHHHHHHhCCc
Confidence            888888888754

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.7e-37  Score=273.42  Aligned_cols=184  Identities=22%  Similarity=0.256  Sum_probs=146.3

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------C---------CeeEEEec
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------K---------GRNVAVIK  113 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~---------g~~i~~~~  113 (280)
                      ++|+++|+++.|++++||+||||+|++|++++|+||||||||||+ ++|.|+..        .         +..|+|++
T Consensus         3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLl-K~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP   81 (254)
T COG1121           3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLL-KAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP   81 (254)
T ss_pred             cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence            579999999999976899999999999999999999999999999 99999621        1         24688998


Q ss_pred             CCcc--ccccc--ceeee-----ec-----------ccccccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563          114 SNKD--TRYGL--DSIVT-----HD-----------GVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVI  159 (280)
Q Consensus       114 ~~~~--~~~~~--~~v~~-----~~-----------~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lL  159 (280)
                      |...  ..+++  ..++.     +.           .....++..+++.+++++.              ||||+++|++|
T Consensus        82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ll  161 (254)
T COG1121          82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLL  161 (254)
T ss_pred             cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEE
Confidence            8653  22222  11111     11           1123345566777776655              88999999999


Q ss_pred             EEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeec
Q 023563          160 GIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKT  233 (280)
Q Consensus       160 lLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~  233 (280)
                      +||||+.      +.+++++|++++++ |+||++||||++.+.+          +||+|++|+.++++.|++++++   +
T Consensus       162 lLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~----------~~D~vi~Ln~~~~~~G~~~~~~---~  227 (254)
T COG1121         162 LLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMA----------YFDRVICLNRHLIASGPPEEVL---T  227 (254)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHh----------hCCEEEEEcCeeEeccChhhcc---C
Confidence            9999954      45699999999998 9999999999999987          9999999999999999999999   7


Q ss_pred             CCCcEEEeCCccceee
Q 023563          234 EETKTELIGGSDIYMP  249 (280)
Q Consensus       234 ~~~~~~~~~~~~~~~~  249 (280)
                      .+++...|++......
T Consensus       228 ~~~l~~~~g~~~~~~~  243 (254)
T COG1121         228 EENLEKAFGGSLAHAL  243 (254)
T ss_pred             HHHHHHHhCccchhee
Confidence            7777777775444333

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=4.2e-36  Score=264.41  Aligned_cols=183  Identities=19%  Similarity=0.248  Sum_probs=147.4

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~~  123 (280)
                      ||+++||||.|+++.+++|+||+|++||+++|+|||||||||+| ++|+++..        +|.++.-... ...|..++
T Consensus         1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtL-kMINrLiept~G~I~i~g~~i~~~d~-~~LRr~IG   78 (309)
T COG1125           1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTL-KMINRLIEPTSGEILIDGEDISDLDP-VELRRKIG   78 (309)
T ss_pred             CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHH-HHHhcccCCCCceEEECCeecccCCH-HHHHHhhh
Confidence            68999999999999999999999999999999999999999999 99999833        4444432211 23466778


Q ss_pred             eeeeeccccccc---------------------------ccccCc--hHHHHHH--------------hhhhccCCCEEE
Q 023563          124 SIVTHDGVKLPC---------------------------CALTTL--SSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       124 ~v~~~~~~~~~~---------------------------~~~~~l--~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      |+.|+.+++...                           +.+.++  .++.+|+              +|||+.+|++||
T Consensus        79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL  158 (309)
T COG1125          79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL  158 (309)
T ss_pred             hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence            888765542211                           122333  2345544              689999999999


Q ss_pred             EeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563          161 IDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT  233 (280)
Q Consensus       161 LDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~  233 (280)
                      ||||+.      +..+.+.++++.++.|+|||+||||+++|.+          ++|||.+|++ +++..++|+++..++.
T Consensus       159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~k----------Ladri~vm~~G~i~Q~~~P~~il~~Pa  228 (309)
T COG1125         159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALK----------LADRIAVMDAGEIVQYDTPDEILANPA  228 (309)
T ss_pred             ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHh----------hhceEEEecCCeEEEeCCHHHHHhCcc
Confidence            999965      4458889999999999999999999999987          9999999999 9999999999998888


Q ss_pred             CCCcEEEeCCccc
Q 023563          234 EETKTELIGGSDI  246 (280)
Q Consensus       234 ~~~~~~~~~~~~~  246 (280)
                      ++....++|.++.
T Consensus       229 n~FV~~f~g~~~~  241 (309)
T COG1125         229 NDFVEDFFGESER  241 (309)
T ss_pred             HHHHHHHhccccc
Confidence            8777777776644

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-35  Score=260.03  Aligned_cols=177  Identities=20%  Similarity=0.209  Sum_probs=140.3

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCccccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~~~~  122 (280)
                      +++++++|+|+||+..+++||||+|++||+++|||||||||||++ ++|.|+.        +.|+++.-++++...+.++
T Consensus         3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlf-NlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi   81 (250)
T COG0411           3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLF-NLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI   81 (250)
T ss_pred             ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeee-eeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence            579999999999999999999999999999999999999999999 9999973        3566666666666566666


Q ss_pred             ceeeeeccccccc---------------------------------------ccccCchHHHHHH--------------h
Q 023563          123 DSIVTHDGVKLPC---------------------------------------CALTTLSSFRQKF--------------G  149 (280)
Q Consensus       123 ~~v~~~~~~~~~~---------------------------------------~~~~~l~~~~~~~--------------a  149 (280)
                      ...||....+...                                       +...++.+.++..              |
T Consensus        82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA  161 (250)
T COG0411          82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA  161 (250)
T ss_pred             eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence            6666532211110                                       1122333333222              6


Q ss_pred             hhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          150 SDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      +||+.+|++||||||...      .++.+.|++++++.|.||++|.|||+.+.+          +||||++|+. ++++.
T Consensus       162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~----------l~dri~Vl~~G~~IAe  231 (250)
T COG0411         162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMG----------LADRIVVLNYGEVIAE  231 (250)
T ss_pred             HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhh----------hccEEEeccCCcCccc
Confidence            789999999999999543      468999999998768999999999999986          9999999999 99999


Q ss_pred             cCcceeeeeecCCCcEEEe
Q 023563          223 GKRAFFTLRKTEETKTELI  241 (280)
Q Consensus       223 g~~~~~~~~~~~~~~~~~~  241 (280)
                      |+|+++.   +++.+.+.|
T Consensus       232 G~P~eV~---~dp~VieAY  247 (250)
T COG0411         232 GTPEEVR---NNPRVIEAY  247 (250)
T ss_pred             CCHHHHh---cCHHhHHHh
Confidence            9999998   666555544

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.2e-34  Score=253.45  Aligned_cols=170  Identities=22%  Similarity=0.259  Sum_probs=131.1

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCc--ccc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNK--DTR  119 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~--~~~  119 (280)
                      +++|++++|+++||++.+++||||+|++||+++|+||||||||||+ |.|.|+..        .|.++.-+....  ..+
T Consensus         6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlL-r~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLL-RLILGLLRPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHH-HHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence            5689999999999999999999999999999999999999999999 99999732        333333222211  123


Q ss_pred             cccceeeeeccccccc----------------------------ccccCchHH-------------HHHH--hhhhccCC
Q 023563          120 YGLDSIVTHDGVKLPC----------------------------CALTTLSSF-------------RQKF--GSDAYDQV  156 (280)
Q Consensus       120 ~~~~~v~~~~~~~~~~----------------------------~~~~~l~~~-------------~~~~--a~aL~~~p  156 (280)
                      ..++.+||+..++...                            +..+++..-             .+|.  |||++.+|
T Consensus        85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP  164 (263)
T COG1127          85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP  164 (263)
T ss_pred             hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence            4455666643322111                            111222111             1111  68999999


Q ss_pred             CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++|++||||+.+|      +-++|+++++..|.|+++||||++.+..          +|||+++|.+ +++++|+++++.
T Consensus       165 ell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~----------i~Drv~~L~~gkv~~~Gt~~el~  234 (263)
T COG1127         165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLT----------IADRVAVLADGKVIAEGTPEELL  234 (263)
T ss_pred             CEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHh----------hhceEEEEeCCEEEEeCCHHHHH
Confidence            9999999988764      7889999999999999999999999986          9999999999 999999999997


Q ss_pred             e
Q 023563          230 L  230 (280)
Q Consensus       230 ~  230 (280)
                      .
T Consensus       235 ~  235 (263)
T COG1127         235 A  235 (263)
T ss_pred             h
Confidence            3

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-34  Score=269.66  Aligned_cols=180  Identities=18%  Similarity=0.196  Sum_probs=143.9

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCccccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~~~~  122 (280)
                      +.++++||+|+||+..+++|+||+|++||+++|+||||||||||| |+|+|+.        ++|+++..++++   +.++
T Consensus         4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlL-R~IAGfe~p~~G~I~l~G~~i~~lpp~---kR~i   79 (352)
T COG3842           4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLL-RMIAGFEQPSSGEILLDGEDITDVPPE---KRPI   79 (352)
T ss_pred             ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCChh---hccc
Confidence            479999999999999999999999999999999999999999999 9999983        355666555443   4455


Q ss_pred             ceeeeecccc----------------------------cccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          123 DSIVTHDGVK----------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       123 ~~v~~~~~~~----------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      +.|||...++                            .+++.+.++..+.+++              ||||+.+|++||
T Consensus        80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL  159 (352)
T COG3842          80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL  159 (352)
T ss_pred             ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence            6666532211                            1123344555555444              689999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT  233 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~  233 (280)
                      ||||.+.+      ++...++++.++.|+|.|+||||.++|..          ++|||.+|++ ++...|+|+++..++.
T Consensus       160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~----------msDrI~Vm~~G~I~Q~gtP~eiY~~P~  229 (352)
T COG3842         160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALA----------MSDRIAVMNDGRIEQVGTPEEIYERPA  229 (352)
T ss_pred             hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhh----------hccceEEccCCceeecCCHHHHhhCcc
Confidence            99996654      47888899998899999999999999975          9999999999 9999999999997776


Q ss_pred             CCCcEEEeCCc
Q 023563          234 EETKTELIGGS  244 (280)
Q Consensus       234 ~~~~~~~~~~~  244 (280)
                      +.....++|..
T Consensus       230 ~~fVA~FiG~~  240 (352)
T COG3842         230 TRFVADFIGES  240 (352)
T ss_pred             hHHHHHHhCcc
Confidence            66666666543

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-34  Score=259.70  Aligned_cols=172  Identities=20%  Similarity=0.236  Sum_probs=142.0

Q ss_pred             cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCc--
Q 023563           52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNK--  116 (280)
Q Consensus        52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~--  116 (280)
                      ||++++|+|.|..     ..+|+||||+|++||++||+|.||||||||+ |+++++.        ++|.++.-+....  
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLi-R~iN~Le~PtsG~v~v~G~di~~l~~~~Lr   79 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL-RLINLLERPTSGSVFVDGQDLTALSEAELR   79 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHH-HHHhccCCCCCceEEEcCEecccCChHHHH
Confidence            6899999999975     5799999999999999999999999999999 9999983        3555555443322  


Q ss_pred             ccccccceeeeeccccccc---------------------------ccccCchHHHHHH--------------hhhhccC
Q 023563          117 DTRYGLDSIVTHDGVKLPC---------------------------CALTTLSSFRQKF--------------GSDAYDQ  155 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~~---------------------------~~~~~l~~~~~~~--------------a~aL~~~  155 (280)
                      ..|..++++||+.+++...                           +.++++.+..+++              ||||+.+
T Consensus        80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~  159 (339)
T COG1135          80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN  159 (339)
T ss_pred             HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence            2366778888876654321                           3345555555554              7899999


Q ss_pred             CCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          156 VDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       156 p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      |++||.||||+++|      ++++|+++.++.|.||+++||.|+.+.+          +||||.+|+. +++..|+..++
T Consensus       160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~----------ic~rVavm~~G~lvE~G~v~~v  229 (339)
T COG1135         160 PKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKR----------ICDRVAVLDQGRLVEEGTVSEV  229 (339)
T ss_pred             CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHH----------HhhhheEeeCCEEEEeccHHHh
Confidence            99999999998764      9999999999999999999999999997          9999999999 99999999999


Q ss_pred             eeeecC
Q 023563          229 TLRKTE  234 (280)
Q Consensus       229 ~~~~~~  234 (280)
                      +..+..
T Consensus       230 F~~Pk~  235 (339)
T COG1135         230 FANPKH  235 (339)
T ss_pred             hcCcch
Confidence            855433

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.3e-33  Score=243.87  Aligned_cols=154  Identities=21%  Similarity=0.207  Sum_probs=116.5

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------C-------CeeEEEecCCc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------K-------GRNVAVIKSNK  116 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~-------g~~i~~~~~~~  116 (280)
                      +++++++++.|++..||+||||+|.+||+++|+||||||||||+ ++++|+..        .       +.++++++|+.
T Consensus         3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLL-riiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~   81 (248)
T COG1116           3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLL-RLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED   81 (248)
T ss_pred             eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence            68999999999999999999999999999999999999999999 99999832        1       22344444443


Q ss_pred             ccccccceeeee---------------cccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH
Q 023563          117 DTRYGLDSIVTH---------------DGVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF  167 (280)
Q Consensus       117 ~~~~~~~~v~~~---------------~~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~  167 (280)
                      ... +...+.++               .......+..+++..+.+++              ||||+.+|++||||||..+
T Consensus        82 ~Ll-PW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA  160 (248)
T COG1116          82 ALL-PWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA  160 (248)
T ss_pred             ccc-chhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence            211 10000000               00111223344555555444              6899999999999999665


Q ss_pred             H------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          168 E------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       168 ~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +      .+.+.+.+++++.++||++||||+++|-.          ++|||++|.+
T Consensus       161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~----------LsdRivvl~~  206 (248)
T COG1116         161 LDALTREELQDELLRLWEETRKTVLLVTHDVDEAVY----------LADRVVVLSN  206 (248)
T ss_pred             hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh----------hhCEEEEecC
Confidence            4      48889999998889999999999999975          9999999988

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.7e-34  Score=247.45  Aligned_cols=177  Identities=22%  Similarity=0.275  Sum_probs=134.6

Q ss_pred             ccEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCC--cccc
Q 023563           51 SMVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSN--KDTR  119 (280)
Q Consensus        51 ~~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~--~~~~  119 (280)
                      ++|+++||++.| +++.+|+||||+|++||+++|+||||||||||| |+|.|+.-        +|.++.-+...  ...|
T Consensus         2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLL-R~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r   80 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLL-RSLNGLVDPTSGEILFNGVQITKLKGKELRKLR   80 (258)
T ss_pred             ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHH-HHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence            489999999999 889999999999999999999999999999999 99999732        22222111111  1124


Q ss_pred             cccceeeeeccccc-----------------------------------ccccccCchHHHHHH--------------hh
Q 023563          120 YGLDSIVTHDGVKL-----------------------------------PCCALTTLSSFRQKF--------------GS  150 (280)
Q Consensus       120 ~~~~~v~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~--------------a~  150 (280)
                      ..++++||+.++..                                   .++...++.+.+-+.              ||
T Consensus        81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR  160 (258)
T COG3638          81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR  160 (258)
T ss_pred             HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence            44556665433221                                   122333444333222              68


Q ss_pred             hhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      ||+++|++||.|||++.      ..+++.|++++++.|.|+|+..|+++.|.+          |||||+-|++ +++++|
T Consensus       161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~----------Y~~Riigl~~G~ivfDg  230 (258)
T COG3638         161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKK----------YADRIIGLKAGRIVFDG  230 (258)
T ss_pred             HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHH----------HHhhheEecCCcEEEeC
Confidence            99999999999999654      459999999999889999999999999997          9999999999 999999


Q ss_pred             CcceeeeeecCCCcEEEeC
Q 023563          224 KRAFFTLRKTEETKTELIG  242 (280)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~  242 (280)
                      +++++.    ++.+.++||
T Consensus       231 ~~~el~----~~~~~~iYg  245 (258)
T COG3638         231 PASELT----DEALDEIYG  245 (258)
T ss_pred             Chhhhh----HHHHHHHhc
Confidence            999854    444555555

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.98  E-value=3.7e-32  Score=238.41  Aligned_cols=169  Identities=14%  Similarity=0.107  Sum_probs=126.8

Q ss_pred             ccEEEcCceEEeCCee----eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cc
Q 023563           51 SMVSPRPPLFSLQNRN----LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DT  118 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~----vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~  118 (280)
                      ++|+++|+++.|+++.    +|++|||+|.+||++||+|+||||||||. ++++|+.. ....|.+-....       ..
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~-r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~   80 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLA-RLLAGLEKPSSGSILLDGKPLAPKKRAKAF   80 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHH-HHHhcccCCCCceEEECCcccCccccchhh
Confidence            4899999999998877    99999999999999999999999999999 99999843 222232222111       11


Q ss_pred             ccccceeeeecccc---------------------------cccccccCc-hHHHHHH--------------hhhhccCC
Q 023563          119 RYGLDSIVTHDGVK---------------------------LPCCALTTL-SSFRQKF--------------GSDAYDQV  156 (280)
Q Consensus       119 ~~~~~~v~~~~~~~---------------------------~~~~~~~~l-~~~~~~~--------------a~aL~~~p  156 (280)
                      ...+..+||.....                           ...+..+++ ..+++++              ||||+.+|
T Consensus        81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P  160 (252)
T COG1124          81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP  160 (252)
T ss_pred             ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence            22334444421100                           011111222 1122221              68999999


Q ss_pred             CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++||+|||++.+|      ++++|.++.+++|.|+|+||||+..+..          +||||++|++ .++..++..++.
T Consensus       161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~----------~cdRi~Vm~~G~ivE~~~~~~l~  230 (252)
T COG1124         161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEH----------MCDRIAVMDNGQIVEIGPTEELL  230 (252)
T ss_pred             CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHH----------HhhheeeeeCCeEEEeechhhhh
Confidence            9999999988764      8999999999999999999999999997          9999999999 999999998887


Q ss_pred             e
Q 023563          230 L  230 (280)
Q Consensus       230 ~  230 (280)
                      .
T Consensus       231 ~  231 (252)
T COG1124         231 S  231 (252)
T ss_pred             c
Confidence            3

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.97  E-value=4.7e-32  Score=250.08  Aligned_cols=170  Identities=19%  Similarity=0.170  Sum_probs=123.2

Q ss_pred             CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----cccccc
Q 023563           49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGL  122 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~  122 (280)
                      +.++|+++||+|+|+++.+|+||||+|++||++||+||||||||||+ ++|+|+.. ....+.+...+.     ..+..+
T Consensus         4 ~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl-~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i   82 (306)
T PRK13537          4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTL-RMLLGLTHPDAGSISLCGEPVPSRARHARQRV   82 (306)
T ss_pred             CCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence            34589999999999998999999999999999999999999999999 99999832 222222111100     011223


Q ss_pred             ceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563          123 DSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGI  161 (280)
Q Consensus       123 ~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL  161 (280)
                      +++++......                           ..+...++....++.              |+||+.+|++|||
T Consensus        83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllL  162 (306)
T PRK13537         83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVL  162 (306)
T ss_pred             EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            33333211100                           001112222222111              5689999999999


Q ss_pred             eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      |||++.+      .++++|++++++ |+|||++||+++++.+          +||+|++|++ ++++.|+++++..
T Consensus       163 DEPt~gLD~~~~~~l~~~l~~l~~~-g~till~sH~l~e~~~----------~~d~i~il~~G~i~~~g~~~~l~~  227 (306)
T PRK13537        163 DEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAER----------LCDRLCVIEEGRKIAEGAPHALIE  227 (306)
T ss_pred             eCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEECCHHHHHh
Confidence            9997654      588999999765 9999999999999987          9999999999 9999999998863

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.4e-32  Score=245.13  Aligned_cols=180  Identities=19%  Similarity=0.164  Sum_probs=134.4

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEec-------CCcccccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIK-------SNKDTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~-------~~~~~~~~~~  123 (280)
                      +|+++|+++.|+...+++||||+|+.||+++|+||||||||||| ++|+|+.. ....|.+-.       +.......++
T Consensus         2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlL-RiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG   80 (345)
T COG1118           2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLL-RIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG   80 (345)
T ss_pred             ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHH-HHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence            68999999999999999999999999999999999999999999 99999833 111211111       1011123455


Q ss_pred             eeeeecccc-----------------------------cccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          124 SIVTHDGVK-----------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       124 ~v~~~~~~~-----------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      .+||+..++                             .+.+...+++.+.+++              ||||+.+|++||
T Consensus        81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLL  160 (345)
T COG1118          81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLL  160 (345)
T ss_pred             EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEe
Confidence            555532211                             0112334455555554              689999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT  233 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~  233 (280)
                      ||||...+      ++...|+++.++.|.|+++||||.+++.+          +||||++|++ +|...|+|+++...+.
T Consensus       161 LDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~----------ladrvvvl~~G~Ieqvg~p~ev~~~P~  230 (345)
T COG1118         161 LDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE----------LADRVVVLNQGRIEQVGPPDEVYDHPA  230 (345)
T ss_pred             ecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh----------hcceEEEecCCeeeeeCCHHHHhcCCC
Confidence            99996554      57888889988889999999999999987          9999999999 9999999999985544


Q ss_pred             CCCcEEEeC
Q 023563          234 EETKTELIG  242 (280)
Q Consensus       234 ~~~~~~~~~  242 (280)
                      ......+.|
T Consensus       231 s~fV~~f~G  239 (345)
T COG1118         231 SRFVARFLG  239 (345)
T ss_pred             ccceecccc
Confidence            443333333

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.6e-32  Score=251.56  Aligned_cols=177  Identities=19%  Similarity=0.195  Sum_probs=139.2

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~~  123 (280)
                      +|+++||+|.||+..+++|+||+|+.||+++|+||||||||||| ++|+|+..        .|+++..++|.   ..++.
T Consensus         3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlL-r~IAGLe~~~~G~I~i~g~~vt~l~P~---~R~ia   78 (338)
T COG3839           3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLL-RMIAGLEEPTSGEILIDGRDVTDLPPE---KRGIA   78 (338)
T ss_pred             EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCChh---HCCEE
Confidence            69999999999987699999999999999999999999999999 99999832        44444433332   33455


Q ss_pred             eeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563          124 SIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGID  162 (280)
Q Consensus       124 ~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD  162 (280)
                      .+||...++.                           +.....++.+++++.              ||||+.+|+++|||
T Consensus        79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D  158 (338)
T COG3839          79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD  158 (338)
T ss_pred             EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence            5555322211                           112233455555543              68999999999999


Q ss_pred             Cccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeecCC
Q 023563          163 EAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKTEE  235 (280)
Q Consensus       163 EP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~~~  235 (280)
                      ||.+      +..++..|+++.++.|.|+|+||||..+|..          ++|||.+|++ ++...|+|.++..++.+.
T Consensus       159 EPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmt----------ladri~Vm~~G~i~Q~g~p~ely~~P~n~  228 (338)
T COG3839         159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMT----------LADRIVVMNDGRIQQVGTPLELYERPANL  228 (338)
T ss_pred             CchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHh----------hCCEEEEEeCCeeeecCChHHHhhCccch
Confidence            9966      4458899999999899999999999999975          9999999999 999999999999776666


Q ss_pred             CcEEEeC
Q 023563          236 TKTELIG  242 (280)
Q Consensus       236 ~~~~~~~  242 (280)
                      ....++|
T Consensus       229 fVA~FiG  235 (338)
T COG3839         229 FVAGFIG  235 (338)
T ss_pred             hhhhhcC
Confidence            5555555

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.97  E-value=9.1e-33  Score=236.01  Aligned_cols=173  Identities=19%  Similarity=0.186  Sum_probs=127.1

Q ss_pred             cEEEcCceEEeCCee-eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEe-----cCCcccccccce
Q 023563           52 MVSPRPPLFSLQNRN-LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVI-----KSNKDTRYGLDS  124 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~-vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~-----~~~~~~~~~~~~  124 (280)
                      ||++.+++|+|+... +++||||++++||++||+|||||||||+| ++|+++... ...+..-     .+....+..++-
T Consensus         1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~L-RmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV   79 (245)
T COG4555           1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLL-RMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV   79 (245)
T ss_pred             CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHH-HHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence            689999999999865 99999999999999999999999999999 999997442 2222111     111122333333


Q ss_pred             eeeeccccccc---------------------------ccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563          125 IVTHDGVKLPC---------------------------CALTTLSSFRQKF--------------GSDAYDQVDVIGIDE  163 (280)
Q Consensus       125 v~~~~~~~~~~---------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE  163 (280)
                      ++...+.+...                           ....++.+.+++.              ||||+++|+++++||
T Consensus        80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE  159 (245)
T COG4555          80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE  159 (245)
T ss_pred             ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC
Confidence            33211111110                           1122344444333              679999999999999


Q ss_pred             cccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeecCCC
Q 023563          164 AQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKTEET  236 (280)
Q Consensus       164 P~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~~~~  236 (280)
                      |++++|      +.+.+++++++ |++||++||+++++..          +||+|++|+. .+++.|+++++..+....+
T Consensus       160 P~sGLDi~~~r~~~dfi~q~k~e-gr~viFSSH~m~Evea----------lCDrvivlh~Gevv~~gs~~~l~~r~~~~~  228 (245)
T COG4555         160 PTSGLDIRTRRKFHDFIKQLKNE-GRAVIFSSHIMQEVEA----------LCDRVIVLHKGEVVLEGSIEALDARTVLRN  228 (245)
T ss_pred             CCCCccHHHHHHHHHHHHHhhcC-CcEEEEecccHHHHHH----------hhheEEEEecCcEEEcCCHHHHHHHHhhcC
Confidence            987765      67888888887 9999999999999987          9999999999 9999999998875544433

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.97  E-value=1.4e-31  Score=245.61  Aligned_cols=167  Identities=18%  Similarity=0.194  Sum_probs=124.1

Q ss_pred             cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----ccccccce
Q 023563           52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGLDS  124 (280)
Q Consensus        52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~~~  124 (280)
                      +++++||+|.|+ ++.+|+||||+|++|+++||+||||||||||+ ++|+|+.. .+..+.+...+.     ..+..+++
T Consensus         4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTll-k~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy   82 (293)
T COG1131           4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLL-KILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY   82 (293)
T ss_pred             eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence            688999999999 69999999999999999999999999999999 99999843 333333332211     11223333


Q ss_pred             eeeeccc---------------------------ccccccccCchHHHHH------------H--hhhhccCCCEEEEeC
Q 023563          125 IVTHDGV---------------------------KLPCCALTTLSSFRQK------------F--GSDAYDQVDVIGIDE  163 (280)
Q Consensus       125 v~~~~~~---------------------------~~~~~~~~~l~~~~~~------------~--a~aL~~~p~lLlLDE  163 (280)
                      +.+....                           ....+...++....++            .  |.||+.+|++|||||
T Consensus        83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE  162 (293)
T COG1131          83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE  162 (293)
T ss_pred             EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence            3332111                           0111222233321111            1  568999999999999


Q ss_pred             cccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          164 AQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       164 P~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||+.+      +++++|++++++.|+||+++||.++++.+          +||+|++|++ +++++|+++++.
T Consensus       163 Pt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~----------~~d~v~il~~G~~~~~g~~~~l~  225 (293)
T COG1131         163 PTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEE----------LCDRVIILNDGKIIAEGTPEELK  225 (293)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHH----------hCCEEEEEeCCEEEEeCCHHHHH
Confidence            97654      58999999999744899999999999987          8999999999 999999988865

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.97  E-value=1.2e-31  Score=250.62  Aligned_cols=169  Identities=20%  Similarity=0.187  Sum_probs=123.2

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccccc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLD  123 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~  123 (280)
                      .++|+++||+|+|+++.+|+|+||+|++|+++||+||||||||||+ ++|+|+.. ....+.+...+     ...+..++
T Consensus        39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl-~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig  117 (340)
T PRK13536         39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIA-RMILGMTSPDAGKITVLGVPVPARARLARARIG  117 (340)
T ss_pred             ceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence            3579999999999999999999999999999999999999999999 99999732 22222221111     01122233


Q ss_pred             eeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563          124 SIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGID  162 (280)
Q Consensus       124 ~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD  162 (280)
                      ++++......                           ..+...++.+..++.              |+||+.+|++||||
T Consensus       118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD  197 (340)
T PRK13536        118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD  197 (340)
T ss_pred             EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            3333211100                           001111222211111              56899999999999


Q ss_pred             CcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          163 EAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       163 EP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      ||++.      ..++++|++++++ |+|||++||+++++.+          +||+|++|++ ++++.|+++++..
T Consensus       198 EPt~gLD~~~r~~l~~~l~~l~~~-g~tilisSH~l~e~~~----------~~d~i~il~~G~i~~~g~~~~l~~  261 (340)
T PRK13536        198 EPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAER----------LCDRLCVLEAGRKIAEGRPHALID  261 (340)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHh
Confidence            99765      4589999999875 9999999999999987          9999999999 9999999998863

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=5.6e-32  Score=235.69  Aligned_cols=168  Identities=18%  Similarity=0.222  Sum_probs=136.8

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCccccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNKDTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~~~~~~~  122 (280)
                      +||+++||+..||+..+|+||||++++||+++|+||||+|||||+ +.|.|+        .+.|+++.-++++...+.++
T Consensus         2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlL-kti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi   80 (237)
T COG0410           2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLL-KTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI   80 (237)
T ss_pred             CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence            589999999999999999999999999999999999999999999 999997        34677777777777777777


Q ss_pred             ceeeeeccccccccccc-----------------CchHHHHHH------------------------hhhhccCCCEEEE
Q 023563          123 DSIVTHDGVKLPCCALT-----------------TLSSFRQKF------------------------GSDAYDQVDVIGI  161 (280)
Q Consensus       123 ~~v~~~~~~~~~~~~~~-----------------~l~~~~~~~------------------------a~aL~~~p~lLlL  161 (280)
                      .++.+-...+......+                 +++...+.+                        ||||+.+|++|||
T Consensus        81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL  160 (237)
T COG0410          81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL  160 (237)
T ss_pred             EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence            77766322211110000                 022222211                        6799999999999


Q ss_pred             eCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          162 DEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       162 DEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||+..      .++.+.|++++++.|.||++|.++.+++.+          ++||.++|.+ ++++.|+.+++.
T Consensus       161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~----------iaDr~yvle~Griv~~G~~~eL~  225 (237)
T COG0410         161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALE----------IADRGYVLENGRIVLSGTAAELL  225 (237)
T ss_pred             cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHH----------hhCEEEEEeCCEEEEecCHHHHh
Confidence            999654      579999999998768899999999999986          9999999999 999999999988

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=1.3e-32  Score=234.86  Aligned_cols=179  Identities=18%  Similarity=0.175  Sum_probs=143.7

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCccccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNKDTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~~~~~~~  122 (280)
                      ++|.++|+.|+|+++.+++||||+|++||++||+|||||||||.+ .++.|+        ..++.+++.++.+.+.|.++
T Consensus         3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~F-ymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi   81 (243)
T COG1137           3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTF-YMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI   81 (243)
T ss_pred             cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEE-EEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence            368999999999999999999999999999999999999999999 999997        34667777777777778888


Q ss_pred             ceeeeeccccccc-----------------------------ccccCchHHHHHH--------------hhhhccCCCEE
Q 023563          123 DSIVTHDGVKLPC-----------------------------CALTTLSSFRQKF--------------GSDAYDQVDVI  159 (280)
Q Consensus       123 ~~v~~~~~~~~~~-----------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lL  159 (280)
                      +++.|....+...                             +....+.+++++.              ||||+.+|+++
T Consensus        82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi  161 (243)
T COG1137          82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI  161 (243)
T ss_pred             ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence            8877642221111                             0011122222211              67999999999


Q ss_pred             EEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563          160 GIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK  232 (280)
Q Consensus       160 lLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~  232 (280)
                      |||||++.      .++..+++.+++. |..|+++.|+..+-.          .+|||.+++.+ ++++.|+|+++.   
T Consensus       162 LLDEPFAGVDPiaV~dIq~iI~~L~~r-giGvLITDHNVREtL----------~i~dRaYIi~~G~vla~G~p~ei~---  227 (243)
T COG1137         162 LLDEPFAGVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVRETL----------DICDRAYIISDGKVLAEGSPEEIV---  227 (243)
T ss_pred             EecCCccCCCchhHHHHHHHHHHHHhC-CceEEEccccHHHHH----------hhhheEEEEecCeEEecCCHHHHh---
Confidence            99999654      5788899999886 999999999999775          59999999999 999999999999   


Q ss_pred             cCCCcEEEeCCc
Q 023563          233 TEETKTELIGGS  244 (280)
Q Consensus       233 ~~~~~~~~~~~~  244 (280)
                      +++..+++|-|.
T Consensus       228 ~n~~Vr~~YLG~  239 (243)
T COG1137         228 NNEDVRRVYLGE  239 (243)
T ss_pred             cChhhhhhcccc
Confidence            788888877543

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=4e-31  Score=234.93  Aligned_cols=167  Identities=18%  Similarity=0.219  Sum_probs=126.9

Q ss_pred             ccEEEcCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC-eeEEEecCC--------ccccc
Q 023563           51 SMVSPRPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG-RNVAVIKSN--------KDTRY  120 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g-~~i~~~~~~--------~~~~~  120 (280)
                      +++++++++++|++. .+|+|+||+|++|++++|+||||||||||+ ++++|+.... ..+ ++...        ...+.
T Consensus         2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~-~~l~GLl~p~~G~v-~~~g~~~~~~~~~~~~~~   79 (235)
T COG1122           2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLL-KLLNGLLKPTSGEV-LVDGLDTSSEKSLLELRQ   79 (235)
T ss_pred             ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHH-HHHcCcCcCCCCEE-EECCeeccchhhHHHhhc
Confidence            479999999999765 899999999999999999999999999999 9999984321 222 11111        11234


Q ss_pred             ccceeeeecccc----------------------------cccccccCchHHHHHH--------------hhhhccCCCE
Q 023563          121 GLDSIVTHDGVK----------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       121 ~~~~v~~~~~~~----------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~l  158 (280)
                      .++++||.....                            ...+...++.+++++.              |.+|+.+|++
T Consensus        80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i  159 (235)
T COG1122          80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEI  159 (235)
T ss_pred             ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCE
Confidence            445555532111                            1112233444444333              4579999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||||+.+      ++++.++++..+.|+|+|++|||++++..          +||++++|++ +++.+|+|.+++
T Consensus       160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~----------~ad~v~vl~~G~i~~~g~p~~i~  227 (235)
T COG1122         160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE----------YADRVVVLDDGKILADGDPAEIF  227 (235)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHh----------hCCEEEEEECCEEeecCCHHHHh
Confidence            9999997754      58999999998768999999999999986          9999999999 999999998887

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.97  E-value=4.2e-31  Score=247.08  Aligned_cols=168  Identities=18%  Similarity=0.228  Sum_probs=124.2

Q ss_pred             cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCc--c
Q 023563           52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNK--D  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~--~  117 (280)
                      ||+++||+|+|++    ..+|+|+||+|++||++||+||||||||||+ ++|+|+..        +|.++..+.+..  .
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLl-r~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~   79 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-RCVNLLERPTSGSVIVDGQDLTTLSNSELTK   79 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence            5899999999952    4799999999999999999999999999999 99999832        232222111100  0


Q ss_pred             cccccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCC
Q 023563          118 TRYGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQV  156 (280)
Q Consensus       118 ~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p  156 (280)
                      .+..+++++|+.....                           ..+...++.++.+++              |+||+.+|
T Consensus        80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P  159 (343)
T TIGR02314        80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence            1234455554322111                           011122333332222              67999999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++||+|||++.+      .++++|++++++.|.|||++||+++.+.+          +||+|++|++ ++++.|++++++
T Consensus       160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~----------~~d~v~vl~~G~iv~~g~~~~v~  229 (343)
T TIGR02314       160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKR----------ICDCVAVISNGELIEQGTVSEIF  229 (343)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHH
Confidence            999999997654      58899999987679999999999999986          9999999999 999999998886


Q ss_pred             e
Q 023563          230 L  230 (280)
Q Consensus       230 ~  230 (280)
                      .
T Consensus       230 ~  230 (343)
T TIGR02314       230 S  230 (343)
T ss_pred             c
Confidence            3

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.97  E-value=6.6e-31  Score=250.24  Aligned_cols=167  Identities=23%  Similarity=0.272  Sum_probs=123.4

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------eeEE
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RNVA  110 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~i~  110 (280)
                      ++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..        .|            +.++
T Consensus         2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLL-k~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig   80 (402)
T PRK09536          2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLL-RAINGTLTPTAGTVLVAGDDVEALSARAASRRVA   80 (402)
T ss_pred             ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHH-HHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence            479999999999999999999999999999999999999999999 99999732        22            2244


Q ss_pred             EecCCcccccc--cceeee--ec---------c-----cccccccccCchHHHHHH--------------hhhhccCCCE
Q 023563          111 VIKSNKDTRYG--LDSIVT--HD---------G-----VKLPCCALTTLSSFRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       111 ~~~~~~~~~~~--~~~v~~--~~---------~-----~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~l  158 (280)
                      +++|.......  +...+.  ..         .     .....+...++.++.++.              |++|+++|++
T Consensus        81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i  160 (402)
T PRK09536         81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV  160 (402)
T ss_pred             EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            44443221110  000000  00         0     001112223333333322              6789999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||++.+      +++++|++++++ |+|||++|||++++.+          +||++++|++ +++..|++++++
T Consensus       161 LLLDEPtsgLD~~~~~~l~~lL~~l~~~-g~TIIivsHdl~~~~~----------~adrii~l~~G~iv~~G~~~ev~  227 (402)
T PRK09536        161 LLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAAR----------YCDELVLLADGRVRAAGPPADVL  227 (402)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEecCHHHHh
Confidence            9999997654      588899999875 9999999999999987          9999999999 999999999876

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.97  E-value=1.4e-30  Score=239.85  Aligned_cols=168  Identities=17%  Similarity=0.155  Sum_probs=121.2

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccccce
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDS  124 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~  124 (280)
                      .+|+++|++++|+++.+|+|+||+|++|+++||+||||||||||+ ++|+|+.. ....+.+....     ...+..+++
T Consensus         3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~   81 (303)
T TIGR01288         3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIA-RMLLGMISPDRGKITVLGEPVPSRARLARVAIGV   81 (303)
T ss_pred             cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence            479999999999998999999999999999999999999999999 99999732 22222211100     001122233


Q ss_pred             eeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563          125 IVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDE  163 (280)
Q Consensus       125 v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE  163 (280)
                      ++|......                           ..+...++....++.              |++|+.+|++|||||
T Consensus        82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE  161 (303)
T TIGR01288        82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE  161 (303)
T ss_pred             EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            332211100                           001111222221111              568999999999999


Q ss_pred             cccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          164 AQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       164 P~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      |++..      .++++|++++++ |.|||++|||++++.+          +||++++|++ +++..|+++++..
T Consensus       162 Pt~gLD~~~~~~l~~~l~~~~~~-g~til~~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~~  224 (303)
T TIGR01288       162 PTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAER----------LCDRLCVLESGRKIAEGRPHALID  224 (303)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHh
Confidence            97654      588899998775 9999999999999986          9999999999 9999999988763

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=7.6e-31  Score=246.18  Aligned_cols=173  Identities=13%  Similarity=0.130  Sum_probs=126.9

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Cccccccccee
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLDSI  125 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~~v  125 (280)
                      ++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..    ....+..++++
T Consensus         5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLL-r~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v   83 (351)
T PRK11432          5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVL-RLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV   83 (351)
T ss_pred             cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence            489999999999998999999999999999999999999999999 99999832 1111211110    00112233444


Q ss_pred             eeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563          126 VTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA  164 (280)
Q Consensus       126 ~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP  164 (280)
                      +|....+.                           ..+...++..+.++.              ||||+.+|++||||||
T Consensus        84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP  163 (351)
T PRK11432         84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP  163 (351)
T ss_pred             eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            43221110                           111122333333322              6789999999999999


Q ss_pred             ccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeecC
Q 023563          165 QFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKTE  234 (280)
Q Consensus       165 ~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~~  234 (280)
                      ++.      ..+++.|+++.++.|+|+|+||||.+++..          +||+|++|++ +++..|+++++..++.+
T Consensus       164 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~----------laD~i~vm~~G~i~~~g~~~~~~~~p~~  230 (351)
T PRK11432        164 LSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFA----------VSDTVIVMNKGKIMQIGSPQELYRQPAS  230 (351)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence            654      458888998887779999999999999976          9999999999 99999999998755443

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.97  E-value=7.7e-31  Score=246.38  Aligned_cols=171  Identities=18%  Similarity=0.125  Sum_probs=126.2

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----ccccccccee
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSI  125 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v  125 (280)
                      ++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...    ...+..++++
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLL-r~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v   81 (353)
T TIGR03265         3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLL-RIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV   81 (353)
T ss_pred             cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence            379999999999998999999999999999999999999999999 99999832 22222211100    0112234444


Q ss_pred             eeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563          126 VTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA  164 (280)
Q Consensus       126 ~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP  164 (280)
                      +|+...+.                           ..+...++..+.++.              ||||+.+|++||||||
T Consensus        82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP  161 (353)
T TIGR03265        82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEP  161 (353)
T ss_pred             eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            44321110                           011122333333222              6789999999999999


Q ss_pred             ccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563          165 QFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK  232 (280)
Q Consensus       165 ~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~  232 (280)
                      ++.      ..+++.|+++.++.|.|+|+||||++++.+          +||+|++|++ +++..|+++++..++
T Consensus       162 ~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~----------l~d~i~vl~~G~i~~~g~~~~~~~~p  226 (353)
T TIGR03265       162 LSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALS----------MADRIVVMNHGVIEQVGTPQEIYRHP  226 (353)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            654      458888998887779999999999999976          9999999999 999999999887543

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.97  E-value=1.2e-30  Score=231.30  Aligned_cols=166  Identities=19%  Similarity=0.139  Sum_probs=118.4

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------cccccc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTRYGL  122 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~~~~  122 (280)
                      |+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-....         ..+..+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i   79 (235)
T cd03261           1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLL-RLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM   79 (235)
T ss_pred             CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence            4789999999988999999999999999999999999999999 99999842 222222211100         011223


Q ss_pred             ceeeeecccccc----------------------------cccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          123 DSIVTHDGVKLP----------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       123 ~~v~~~~~~~~~----------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      ++++|.......                            .+...++..+.++.              |++|+.+|++||
T Consensus        80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll  159 (235)
T cd03261          80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL  159 (235)
T ss_pred             EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            333332111000                            01111222111111              568999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||++..      .+++.|++++++.|+|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~  225 (235)
T cd03261         160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFA----------IADRIAVLYDGKIVAEGTPEELR  225 (235)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHH----------hcCEEEEEECCeEEEecCHHHHc
Confidence            99997654      57888888876458999999999999876          9999999999 998889888775

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=3.5e-31  Score=232.08  Aligned_cols=166  Identities=19%  Similarity=0.203  Sum_probs=125.2

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc--cccccceeeee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD--TRYGLDSIVTH  128 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~--~~~~~~~v~~~  128 (280)
                      ++++++|+|+||++.|++|+||++++|++.|++|||||||||++ |+|.|+.. ....|.+..+...  ....++++...
T Consensus         2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtf-RmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE   80 (300)
T COG4152           2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTF-RMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE   80 (300)
T ss_pred             ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchH-HHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence            68999999999999999999999999999999999999999999 99999743 2444444433221  12234444443


Q ss_pred             ccccccccc------------------ccCchHHHHHH-----------------------hhhhccCCCEEEEeCcccH
Q 023563          129 DGVKLPCCA------------------LTTLSSFRQKF-----------------------GSDAYDQVDVIGIDEAQFF  167 (280)
Q Consensus       129 ~~~~~~~~~------------------~~~l~~~~~~~-----------------------a~aL~~~p~lLlLDEP~~~  167 (280)
                      .+++.....                  ...+..+++++                       -.+++++|+++|||||.++
T Consensus        81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSG  160 (300)
T COG4152          81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSG  160 (300)
T ss_pred             hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccC
Confidence            332211110                  11122223322                       1268999999999999877


Q ss_pred             HH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          168 ED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       168 ~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +|      +.+.+.+++++ |.|||++||.|+.+.+          +||++++|+. +.+..|+..++-
T Consensus       161 LDPVN~elLk~~I~~lk~~-GatIifSsH~Me~vEe----------LCD~llmL~kG~~V~~G~v~~ir  218 (300)
T COG4152         161 LDPVNVELLKDAIFELKEE-GATIIFSSHRMEHVEE----------LCDRLLMLKKGQTVLYGTVEDIR  218 (300)
T ss_pred             CChhhHHHHHHHHHHHHhc-CCEEEEecchHHHHHH----------HhhhhheecCCceEEeccHHHHH
Confidence            65      67788888886 9999999999999997          9999999999 999999988775

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.97  E-value=1.2e-30  Score=246.67  Aligned_cols=175  Identities=16%  Similarity=0.180  Sum_probs=128.1

Q ss_pred             CCCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----ccccccc
Q 023563           48 FIHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGL  122 (280)
Q Consensus        48 ~~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~  122 (280)
                      ...++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+-...    ...+..+
T Consensus        10 ~~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLL-r~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i   88 (375)
T PRK09452         10 SLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVL-RLIAGFETPDSGRIMLDGQDITHVPAENRHV   88 (375)
T ss_pred             cCCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence            345689999999999998999999999999999999999999999999 99999833 11222111100    0012233


Q ss_pred             ceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563          123 DSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGI  161 (280)
Q Consensus       123 ~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL  161 (280)
                      ++++|....+.                           ..+...++..+.++.              ||||+.+|++|||
T Consensus        89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL  168 (375)
T PRK09452         89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL  168 (375)
T ss_pred             EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            44443221110                           011122333333322              6789999999999


Q ss_pred             eCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563          162 DEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT  233 (280)
Q Consensus       162 DEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~  233 (280)
                      |||++      +..+++.|+++.++.|+|+|+||||.+++..          +||+|++|++ +++..|+++++..++.
T Consensus       169 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~----------laDri~vl~~G~i~~~g~~~~i~~~p~  237 (375)
T PRK09452        169 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALT----------MSDRIVVMRDGRIEQDGTPREIYEEPK  237 (375)
T ss_pred             eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            99965      4458899999988779999999999999976          9999999999 9999999998875543

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.97  E-value=1.9e-30  Score=227.85  Aligned_cols=155  Identities=19%  Similarity=0.218  Sum_probs=115.9

Q ss_pred             cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCcc--
Q 023563           52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKD--  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~--  117 (280)
                      +++++||+|.|+.    ..+|+++||+|++||+++|+||||||||||| ++|.|+.        +.|.++..+.....  
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLL-niig~ld~pt~G~v~i~g~d~~~l~~~~~~~   79 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLGGLDKPTSGEVLINGKDLTKLSEKELAK   79 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence            4789999999953    4799999999999999999999999999999 9999972        23434333322211  


Q ss_pred             -cccccceeeeecccccccc---------------------------cccCchHHHH-HH--------------hhhhcc
Q 023563          118 -TRYGLDSIVTHDGVKLPCC---------------------------ALTTLSSFRQ-KF--------------GSDAYD  154 (280)
Q Consensus       118 -~~~~~~~v~~~~~~~~~~~---------------------------~~~~l~~~~~-~~--------------a~aL~~  154 (280)
                       .+..++++||..++.....                           ...++.+... ++              ||||+.
T Consensus        80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~  159 (226)
T COG1136          80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN  159 (226)
T ss_pred             HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence             1344566776544322211                           1113332222 11              789999


Q ss_pred             CCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563          155 QVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R  218 (280)
Q Consensus       155 ~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~  218 (280)
                      +|++||.||||..      ..+++++++++++.|+|+||||||...+.           +|||++.|++ +
T Consensus       160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-----------~~dr~i~l~dG~  219 (226)
T COG1136         160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-----------YADRVIELKDGK  219 (226)
T ss_pred             CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-----------hCCEEEEEeCCe
Confidence            9999999999654      46999999999888999999999999997           8999999999 6

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.2e-31  Score=228.60  Aligned_cols=177  Identities=20%  Similarity=0.241  Sum_probs=133.1

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEE------------
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAV------------  111 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~------------  111 (280)
                      ||+++||+|+|+++.+++|+|++|++|.+++|+||||||||||+ .+++.+.        ++|.++.-            
T Consensus         1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLL-S~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI   79 (252)
T COG4604           1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI   79 (252)
T ss_pred             CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHH-HHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999 8888762        23333321            


Q ss_pred             ecCCccc--cccccee------eeeccc--------ccccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563          112 IKSNKDT--RYGLDSI------VTHDGV--------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGI  161 (280)
Q Consensus       112 ~~~~~~~--~~~~~~v------~~~~~~--------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL  161 (280)
                      +.|....  |..+..+      ....+.        ...++...++.++.+++              |..++++.++++|
T Consensus        80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL  159 (252)
T COG4604          80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL  159 (252)
T ss_pred             HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence            1111110  1111111      111111        12233444555666555              4568899999999


Q ss_pred             eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeecC
Q 023563          162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKTE  234 (280)
Q Consensus       162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~~  234 (280)
                      |||.+-+      .+++.|++++++.|+||++|-||+++|..          ++|+|+-|++ +++..|+|+++.   ..
T Consensus       160 DEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~----------YsD~IVAlK~G~vv~~G~~~eii---~~  226 (252)
T COG4604         160 DEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASC----------YSDHIVALKNGKVVKQGSPDEII---QP  226 (252)
T ss_pred             cCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHh----------hhhheeeecCCEEEecCCHHHhc---CH
Confidence            9995543      58999999999999999999999999997          9999999999 999999999999   66


Q ss_pred             CCcEEEeC
Q 023563          235 ETKTELIG  242 (280)
Q Consensus       235 ~~~~~~~~  242 (280)
                      +.+.++|.
T Consensus       227 ~~L~eiyd  234 (252)
T COG4604         227 EILSEIYD  234 (252)
T ss_pred             HHHHHHhc
Confidence            66666654

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.2e-30  Score=245.41  Aligned_cols=170  Identities=15%  Similarity=0.091  Sum_probs=125.2

Q ss_pred             cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----ccccccccee
Q 023563           52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSI  125 (280)
Q Consensus        52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v  125 (280)
                      +|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...    ...+..++++
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLL-r~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v   81 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLL-RMVAGLERITSGEIWIGGRVVNELEPADRDIAMV   81 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHH-HHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence            69999999999 788899999999999999999999999999999 99999832 11222111100    0011233334


Q ss_pred             eeecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563          126 VTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA  164 (280)
Q Consensus       126 ~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP  164 (280)
                      +|.....                           ...+...++.++.++.              ||||+.+|++||||||
T Consensus        82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP  161 (356)
T PRK11650         82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP  161 (356)
T ss_pred             eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            4321110                           0112223444443332              6799999999999999


Q ss_pred             ccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563          165 QFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK  232 (280)
Q Consensus       165 ~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~  232 (280)
                      ++.      ..+++.|+++.++.|+|+|++|||++++.+          +||+|++|++ +++..|+++++..++
T Consensus       162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~----------l~D~i~vl~~G~i~~~g~~~~~~~~p  226 (356)
T PRK11650        162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMT----------LADRVVVMNGGVAEQIGTPVEVYEKP  226 (356)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEeCCEEEEECCHHHHHhCC
Confidence            664      458888898887779999999999999986          9999999999 999999999887543

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=4.5e-31  Score=227.26  Aligned_cols=178  Identities=24%  Similarity=0.280  Sum_probs=133.0

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----------------
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----------------  114 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----------------  114 (280)
                      ||+.+|++++..++.+|+++||++++||+.+|+||||||||||+ +.+.|... .+..+.+...                
T Consensus         1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlL-k~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV   79 (259)
T COG4559           1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLL-KALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV   79 (259)
T ss_pred             CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHH-HHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence            68999999999999999999999999999999999999999999 99999743 3334433322                


Q ss_pred             ---Ccccccc--cceeee------ecc--------cccccccccCchHHHHHH--------------hhhh------ccC
Q 023563          115 ---NKDTRYG--LDSIVT------HDG--------VKLPCCALTTLSSFRQKF--------------GSDA------YDQ  155 (280)
Q Consensus       115 ---~~~~~~~--~~~v~~------~~~--------~~~~~~~~~~l~~~~~~~--------------a~aL------~~~  155 (280)
                         .....++  +..+++      +.+        ....++...++..+..+.              ||.|      ..+
T Consensus        80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~  159 (259)
T COG4559          80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPS  159 (259)
T ss_pred             cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCC
Confidence               2111111  111111      000        011223344555554443              4444      346


Q ss_pred             CCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          156 VDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       156 p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      +++|+|||||+.+|      .+.+.++++++ |..|++|-||++.+.+          |||||++|.+ +++++|+|.++
T Consensus       160 ~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~----------YaDrivll~~Grv~a~g~p~~v  228 (259)
T COG4559         160 GRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQ----------YADRIVLLHQGRVIASGSPQDV  228 (259)
T ss_pred             CceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHH----------hhheeeeeeCCeEeecCCHHHh
Confidence            67999999988765      57788888887 8999999999999998          9999999999 99999999999


Q ss_pred             eeeecCCCcEEEeCCc
Q 023563          229 TLRKTEETKTELIGGS  244 (280)
Q Consensus       229 ~~~~~~~~~~~~~~~~  244 (280)
                      +   +++.+..+||..
T Consensus       229 l---t~Etl~~vyg~~  241 (259)
T COG4559         229 L---TDETLERVYGAD  241 (259)
T ss_pred             c---CHHHHHHHhCCc
Confidence            9   888888888743

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=5e-31  Score=227.17  Aligned_cols=170  Identities=15%  Similarity=0.182  Sum_probs=128.2

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-------------hhCCeeEEEecCC-
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-------------TQKGRNVAVIKSN-  115 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-------------~~~g~~i~~~~~~-  115 (280)
                      .+.++++||++.||++.+|+|||++|+++++++|+||||||||||| |++..+             .+.|++|.--..+ 
T Consensus         5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~L-R~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~   83 (253)
T COG1117           5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLL-RCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV   83 (253)
T ss_pred             cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHH-HHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence            3579999999999999999999999999999999999999999999 888875             2234443211101 


Q ss_pred             cccccccceeeeecccccccc---------cccC-----ch----------HHH----HH-----------------Hhh
Q 023563          116 KDTRYGLDSIVTHDGVKLPCC---------ALTT-----LS----------SFR----QK-----------------FGS  150 (280)
Q Consensus       116 ~~~~~~~~~v~~~~~~~~~~~---------~~~~-----l~----------~~~----~~-----------------~a~  150 (280)
                      ...|..++.+||+.+-+ +..         .+.+     +.          .++    ++                 .||
T Consensus        84 ~~lRr~vGMVFQkPnPF-p~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR  162 (253)
T COG1117          84 VELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR  162 (253)
T ss_pred             HHHHHHheeeccCCCCC-CchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence            12356677777753321 110         0000     00          000    11                 178


Q ss_pred             hhccCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      ||+.+|++||||||++++|      +-++|.++++  .-|||+|||+|..|.+          ++|+..++.. +++..|
T Consensus       163 alAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaR----------vSD~taFf~~G~LvE~g  230 (253)
T COG1117         163 ALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQAAR----------VSDYTAFFYLGELVEFG  230 (253)
T ss_pred             HHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHH----------HhHhhhhhcccEEEEEc
Confidence            9999999999999988764      7788888875  7999999999999998          9999999999 999999


Q ss_pred             Ccceeeeeec
Q 023563          224 KRAFFTLRKT  233 (280)
Q Consensus       224 ~~~~~~~~~~  233 (280)
                      ++++++.++.
T Consensus       231 ~T~~iF~~P~  240 (253)
T COG1117         231 PTDKIFTNPK  240 (253)
T ss_pred             CHHhhhcCcc
Confidence            9999995443

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.5e-30  Score=244.28  Aligned_cols=169  Identities=19%  Similarity=0.163  Sum_probs=122.6

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIV  126 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~  126 (280)
                      +|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-...    ...+..+++++
T Consensus         3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL-~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~   81 (369)
T PRK11000          3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLL-RMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF   81 (369)
T ss_pred             EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence            58999999999998999999999999999999999999999999 99999832 22222211100    00112233333


Q ss_pred             eecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563          127 THDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ  165 (280)
Q Consensus       127 ~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~  165 (280)
                      |.....                           ...+...++.++.++.              |+||+.+|++||||||+
T Consensus        82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt  161 (369)
T PRK11000         82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  161 (369)
T ss_pred             CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            321110                           0011122333222221              67899999999999997


Q ss_pred             cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563          166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~  231 (280)
                      +.+      .+++.|+++.++.|.|+|++|||++++.+          +||+|++|++ +++..|+++++..+
T Consensus       162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~----------~~d~i~vl~~G~i~~~g~~~~i~~~  224 (369)
T PRK11000        162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMT----------LADKIVVLDAGRVAQVGKPLELYHY  224 (369)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhC
Confidence            654      47888888877669999999999999976          9999999999 99999999887643

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1e-29  Score=237.98  Aligned_cols=167  Identities=20%  Similarity=0.220  Sum_probs=121.3

Q ss_pred             cEEEcCceEEeC----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------c
Q 023563           52 MVSPRPPLFSLQ----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------D  117 (280)
Q Consensus        52 ~l~~~~ls~~y~----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~  117 (280)
                      ||+++||+++|+    ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....         .
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLl-k~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   79 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLI-RCINLLERPTSGRVLVDGQDLTALSEKELRK   79 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence            589999999997    46899999999999999999999999999999 99999842 222232211110         0


Q ss_pred             cccccceeeeecccccc---------------------------cccccCchHHHHHH--------------hhhhccCC
Q 023563          118 TRYGLDSIVTHDGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQV  156 (280)
Q Consensus       118 ~~~~~~~v~~~~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p  156 (280)
                      .+..+++++|+......                           .+...++.++.++.              |++|+.+|
T Consensus        80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p  159 (343)
T PRK11153         80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence            12233444432211100                           01111222222211              67899999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++||||||++.+      .++++|++++++.|+|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~----------~~d~v~~l~~G~i~~~g~~~~~~  229 (343)
T PRK11153        160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKR----------ICDRVAVIDAGRLVEQGTVSEVF  229 (343)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHH
Confidence            999999997654      58889999877669999999999999986          9999999999 999999988876

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.4e-30  Score=242.47  Aligned_cols=172  Identities=13%  Similarity=0.113  Sum_probs=125.4

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Ccccccccce
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLDS  124 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~~  124 (280)
                      .++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..    ....+..+++
T Consensus        17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~   95 (377)
T PRK11607         17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLL-RMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM   95 (377)
T ss_pred             CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence            4589999999999988899999999999999999999999999999 99999832 1222211110    0011223444


Q ss_pred             eeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563          125 IVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDE  163 (280)
Q Consensus       125 v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE  163 (280)
                      ++|....+.                           ..+...++.++.++.              ||||+.+|++|||||
T Consensus        96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE  175 (377)
T PRK11607         96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE  175 (377)
T ss_pred             EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            444222110                           011112232222222              678999999999999


Q ss_pred             cccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563          164 AQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK  232 (280)
Q Consensus       164 P~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~  232 (280)
                      |++.+      .+++.|+++.++.|.|+|++|||.+++..          +||++++|++ +++..|+++++..++
T Consensus       176 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~----------laDri~vl~~G~i~~~g~~~~~~~~p  241 (377)
T PRK11607        176 PMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMT----------MAGRIAIMNRGKFVQIGEPEEIYEHP  241 (377)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH----------hCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence            96654      47778888877679999999999999876          9999999999 999999999887543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.96  E-value=1.4e-29  Score=222.38  Aligned_cols=165  Identities=16%  Similarity=0.177  Sum_probs=115.7

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----ccccccceee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGLDSIV  126 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~~~v~  126 (280)
                      |+++|++++|+++.+|+|+||+|.+||+++|+||||||||||+ ++|+|+.. ....+.+.....     ..+..+++++
T Consensus         1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (220)
T cd03265           1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTI-KMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF   79 (220)
T ss_pred             CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence            5789999999988999999999999999999999999999999 99999732 222222111000     0011222222


Q ss_pred             eecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563          127 THDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ  165 (280)
Q Consensus       127 ~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~  165 (280)
                      +.....                           ...+...++....++.              +++++.+|++||||||+
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt  159 (220)
T cd03265          80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT  159 (220)
T ss_pred             CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            211100                           0011112222222111              56899999999999997


Q ss_pred             cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      +..      .+++.|.+++++.|+|||++|||++++.+          +||++++|++ +++..|+++++
T Consensus       160 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         160 IGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQ----------LCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEeCCEEEEeCChHHc
Confidence            654      47888888877558999999999999986          9999999999 88888776653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.96  E-value=1.3e-29  Score=225.29  Aligned_cols=167  Identities=21%  Similarity=0.171  Sum_probs=118.3

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe----------eEEEec
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR----------NVAVIK  113 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~----------~i~~~~  113 (280)
                      +|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..        +|.          .+++++
T Consensus         2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~   80 (239)
T cd03296           2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLL-RLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF   80 (239)
T ss_pred             EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence            58999999999988999999999999999999999999999999 99999832        221          233333


Q ss_pred             CCccccc--ccceeee----eccc------------ccccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563          114 SNKDTRY--GLDSIVT----HDGV------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGI  161 (280)
Q Consensus       114 ~~~~~~~--~~~~v~~----~~~~------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL  161 (280)
                      |......  .+...+.    ....            ....+...++..+.++.              ++||+.+|++|||
T Consensus        81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll  160 (239)
T cd03296          81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL  160 (239)
T ss_pred             cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            3321100  0000000    0000            00001111222222211              5689999999999


Q ss_pred             eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||++..      .++++|++++++.|+|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       161 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~  225 (239)
T cd03296         161 DEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALE----------VADRVVVMNKGRIEQVGTPDEVY  225 (239)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hCCEEEEEECCeEEEecCHHHHh
Confidence            9997654      47888888877558999999999998876          8999999999 988888888765

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.96  E-value=1.2e-29  Score=239.06  Aligned_cols=170  Identities=17%  Similarity=0.157  Sum_probs=126.3

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CC--eeEEEecCC----cccccccce
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KG--RNVAVIKSN----KDTRYGLDS  124 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g--~~i~~~~~~----~~~~~~~~~  124 (280)
                      .|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ..  ..+.+....    ...+..+++
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~   83 (362)
T TIGR03258         5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLL-RAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL   83 (362)
T ss_pred             EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence            48999999999998999999999999999999999999999999 99999843 23  333322111    011233445


Q ss_pred             eeeecccccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563          125 IVTHDGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGIDE  163 (280)
Q Consensus       125 v~~~~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE  163 (280)
                      ++|....+..                           .+...++.++.++.              |+||+.+|++|||||
T Consensus        84 vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE  163 (362)
T TIGR03258        84 LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE  163 (362)
T ss_pred             EECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            5543221100                           11122233222222              678999999999999


Q ss_pred             cccH------HHHHHHHHHHHhhc-CCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563          164 AQFF------EDLYDFCREAADHD-GKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK  232 (280)
Q Consensus       164 P~~~------~~i~~~l~~l~~~~-g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~  232 (280)
                      |++.      .++++.|+++.++. |+|+|++|||++++.+          +||+|++|++ +++..|+++++..+.
T Consensus       164 P~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~----------l~dri~vl~~G~i~~~g~~~~~~~~p  230 (362)
T TIGR03258       164 PLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALT----------LADKAGIMKDGRLAAHGEPQALYDAP  230 (362)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            9654      45888899988765 8999999999999976          9999999999 999999999887543

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=7.7e-30  Score=226.45  Aligned_cols=167  Identities=18%  Similarity=0.151  Sum_probs=118.3

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~  122 (280)
                      ++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+ ++|+|+.. .+..+.+.....       ..+..+
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   82 (237)
T PRK11614          4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLL-GTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV   82 (237)
T ss_pred             cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence            479999999999988999999999999999999999999999999 99999732 222222211100       001122


Q ss_pred             ceeeeecccccc-------------------------ccccc-CchHHHHHH--------------hhhhccCCCEEEEe
Q 023563          123 DSIVTHDGVKLP-------------------------CCALT-TLSSFRQKF--------------GSDAYDQVDVIGID  162 (280)
Q Consensus       123 ~~v~~~~~~~~~-------------------------~~~~~-~l~~~~~~~--------------a~aL~~~p~lLlLD  162 (280)
                      +++++.......                         .+... ++.+...+.              |++++.+|++||||
T Consensus        83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD  162 (237)
T PRK11614         83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD  162 (237)
T ss_pred             EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence            233321110000                         00000 011111100              56899999999999


Q ss_pred             CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||++..      .+++.|++++++ |.|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~  225 (237)
T PRK11614        163 EPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALK----------LADRGYVLENGHVVLEDTGDALL  225 (237)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHh----------hCCEEEEEeCCEEEeeCCHHHHh
Confidence            997544      578888888765 9999999999998876          9999999999 999999988876

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.96  E-value=8.5e-30  Score=223.61  Aligned_cols=165  Identities=19%  Similarity=0.242  Sum_probs=115.4

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------ccccccce
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGLDS  124 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~~~  124 (280)
                      |+++|++++|+++.+++++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....       ..+..+++
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (222)
T cd03224           1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLL-KTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY   79 (222)
T ss_pred             CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence            5789999999988899999999999999999999999999999 99999732 222222211100       00122333


Q ss_pred             eeeecccccc-------------------------ccccc-CchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563          125 IVTHDGVKLP-------------------------CCALT-TLSSFRQKF--------------GSDAYDQVDVIGIDEA  164 (280)
Q Consensus       125 v~~~~~~~~~-------------------------~~~~~-~l~~~~~~~--------------a~aL~~~p~lLlLDEP  164 (280)
                      +++.......                         .+... ++....++.              +++++.+|++||||||
T Consensus        80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  159 (222)
T cd03224          80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP  159 (222)
T ss_pred             eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            3332111000                         00000 111111111              5689999999999999


Q ss_pred             ccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          165 QFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       165 ~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++.      ..++++|++++++ |.|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       160 t~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~  220 (222)
T cd03224         160 SEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALE----------IADRAYVLERGRVVLEGTAAELL  220 (222)
T ss_pred             cccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hccEEEEeeCCeEEEeCCHHHHh
Confidence            654      4588899888764 9999999999999876          9999999999 888888776654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.96  E-value=7.1e-30  Score=239.86  Aligned_cols=169  Identities=16%  Similarity=0.184  Sum_probs=123.3

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIV  126 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~  126 (280)
                      +|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...    ...+..+++++
T Consensus         2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLL-r~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~   80 (353)
T PRK10851          2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLL-RIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF   80 (353)
T ss_pred             EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence            58999999999998999999999999999999999999999999 99999832 22222111100    00112233333


Q ss_pred             eecccc-------------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563          127 THDGVK-------------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGI  161 (280)
Q Consensus       127 ~~~~~~-------------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL  161 (280)
                      |.....                               ...+...++.++.+++              |+||+.+|++|||
T Consensus        81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLL  160 (353)
T PRK10851         81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL  160 (353)
T ss_pred             cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            321110                               0011122232222222              6789999999999


Q ss_pred             eCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563          162 DEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       162 DEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~  231 (280)
                      |||++.      ..+++.|+++.++.|.|+|++|||++++.+          +||+|++|++ +++..|+++++..+
T Consensus       161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~----------~~Dri~vl~~G~i~~~g~~~~i~~~  227 (353)
T PRK10851        161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAME----------VADRVVVMSQGNIEQAGTPDQVWRE  227 (353)
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhC
Confidence            999654      458889999887679999999999999986          9999999999 99999999988644

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.96  E-value=1.1e-29  Score=225.48  Aligned_cols=166  Identities=22%  Similarity=0.211  Sum_probs=116.4

Q ss_pred             EEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------ccccc
Q 023563           53 VSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTRYG  121 (280)
Q Consensus        53 l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~~~  121 (280)
                      |+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....         ..+..
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLL-RCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ   79 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence            478999999987 7899999999999999999999999999999 99999842 222222111000         01112


Q ss_pred             cceeeeecccccc-----------------------------------cccccCchHHHHHH--------------hhhh
Q 023563          122 LDSIVTHDGVKLP-----------------------------------CCALTTLSSFRQKF--------------GSDA  152 (280)
Q Consensus       122 ~~~v~~~~~~~~~-----------------------------------~~~~~~l~~~~~~~--------------a~aL  152 (280)
                      ++++++.......                                   .+...++....++.              |+++
T Consensus        80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  159 (241)
T cd03256          80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL  159 (241)
T ss_pred             cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence            2333322111000                                   00111121111111              5689


Q ss_pred             ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563          153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR  225 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~  225 (280)
                      +.+|++||||||++..      .+++.|++++++.|+|||++|||++++.+          +||++++|++ +++..|++
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~----------~~d~v~~l~~G~i~~~~~~  229 (241)
T cd03256         160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLARE----------YADRIVGLKDGRIVFDGPP  229 (241)
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEeecCH
Confidence            9999999999997654      47888888876558999999999999986          9999999999 98888888


Q ss_pred             ceee
Q 023563          226 AFFT  229 (280)
Q Consensus       226 ~~~~  229 (280)
                      +++.
T Consensus       230 ~~~~  233 (241)
T cd03256         230 AELT  233 (241)
T ss_pred             HHhh
Confidence            7753

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.96  E-value=1.2e-29  Score=224.85  Aligned_cols=165  Identities=22%  Similarity=0.203  Sum_probs=116.6

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------c-cccccce
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------D-TRYGLDS  124 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~-~~~~~~~  124 (280)
                      |+++|++++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....      . .+..+++
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (236)
T cd03219           1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLF-NLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR   79 (236)
T ss_pred             CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence            4689999999988899999999999999999999999999999 99999732 222222111100      0 0112233


Q ss_pred             eeeeccccc-------------------------------------ccccccCchHHHHHH--------------hhhhc
Q 023563          125 IVTHDGVKL-------------------------------------PCCALTTLSSFRQKF--------------GSDAY  153 (280)
Q Consensus       125 v~~~~~~~~-------------------------------------~~~~~~~l~~~~~~~--------------a~aL~  153 (280)
                      ++|......                                     ..+...++....++.              |++++
T Consensus        80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~  159 (236)
T cd03219          80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA  159 (236)
T ss_pred             EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence            333211100                                     000111111111111              56899


Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|++||||||++..      .+++.|++++++ |+|||++|||++++.+          +||++++|++ +++..|+++
T Consensus       160 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~  228 (236)
T cd03219         160 TDPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMS----------LADRVTVLDQGRVIAEGTPD  228 (236)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH----------hCCEEEEEeCCEEEeecCHH
Confidence            999999999997644      588889888774 9999999999999976          9999999999 888888888


Q ss_pred             eee
Q 023563          227 FFT  229 (280)
Q Consensus       227 ~~~  229 (280)
                      ++.
T Consensus       229 ~~~  231 (236)
T cd03219         229 EVR  231 (236)
T ss_pred             Hhc
Confidence            775

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.96  E-value=2.4e-29  Score=222.61  Aligned_cols=167  Identities=20%  Similarity=0.210  Sum_probs=117.7

Q ss_pred             cEEEcCceEEeCCe----eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------c
Q 023563           52 MVSPRPPLFSLQNR----NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------D  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~~----~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~  117 (280)
                      ||+++|++++|+++    .+|+++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....         .
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLI-RCINGLERPTSGSVLVDGTDLTLLSGKELRK   79 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence            58999999999876    899999999999999999999999999999 99999832 122222111100         0


Q ss_pred             cccccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCC
Q 023563          118 TRYGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQV  156 (280)
Q Consensus       118 ~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p  156 (280)
                      .+..++++++......                           ..+...++.+..++.              +++++.+|
T Consensus        80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  159 (233)
T cd03258          80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP  159 (233)
T ss_pred             HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            0112223332211100                           001111222221111              56899999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++||||||++..      .+++.|++++++.|+|||++||+++++.+          +||++++|++ +++..|+++++.
T Consensus       160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~  229 (233)
T cd03258         160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKR----------ICDRVAVMEKGEVVEEGTVEEVF  229 (233)
T ss_pred             CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEecCHHHHh
Confidence            999999997654      47888888876558999999999999876          9999999999 998888877664

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.96  E-value=2.6e-29  Score=219.50  Aligned_cols=160  Identities=18%  Similarity=0.185  Sum_probs=110.7

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceeee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIVT  127 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~~  127 (280)
                      |+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-...    ...+..++++++
T Consensus         1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q   79 (213)
T cd03259           1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLL-RLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ   79 (213)
T ss_pred             CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence            4789999999988999999999999999999999999999999 99999732 22222211100    000111222222


Q ss_pred             ecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563          128 HDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF  166 (280)
Q Consensus       128 ~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~  166 (280)
                      .....                           ...+...++..+.++.              +++|+.+|++||||||++
T Consensus        80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~  159 (213)
T cd03259          80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS  159 (213)
T ss_pred             chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            11100                           0011112222222211              578999999999999976


Q ss_pred             HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      ..      .++++|++++++.|+|||++|||++++.+          +||++++|++ ++++.|
T Consensus       160 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~----------~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         160 ALDAKLREELREELKELQRELGITTIYVTHDQEEALA----------LADRIAVMNEGRIVQVG  213 (213)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH----------hcCEEEEEECCEEEecC
Confidence            54      58888888876559999999999999876          9999999998 776543

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.8e-29  Score=226.19  Aligned_cols=168  Identities=15%  Similarity=0.129  Sum_probs=118.5

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~  122 (280)
                      ++|+++|++++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....       ..+..+
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   82 (255)
T PRK11300          4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVF-NCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV   82 (255)
T ss_pred             ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHH-HHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence            479999999999988999999999999999999999999999999 99999832 222221111000       001112


Q ss_pred             ceeeeeccccc------------------------------------------ccccccCchHHHHHH------------
Q 023563          123 DSIVTHDGVKL------------------------------------------PCCALTTLSSFRQKF------------  148 (280)
Q Consensus       123 ~~v~~~~~~~~------------------------------------------~~~~~~~l~~~~~~~------------  148 (280)
                      .++++......                                          ..+...++..+.++.            
T Consensus        83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv  162 (255)
T PRK11300         83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL  162 (255)
T ss_pred             EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence            22222111000                                          000111222221111            


Q ss_pred             --hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563          149 --GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC  219 (280)
Q Consensus       149 --a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i  219 (280)
                        +++++.+|++||||||++..      .++++|.+++++.|+|||++||+++++.+          +||++++|++ ++
T Consensus       163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~----------~~d~i~~l~~g~i  232 (255)
T PRK11300        163 EIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMG----------ISDRIYVVNQGTP  232 (255)
T ss_pred             HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCeE
Confidence              56899999999999996654      47888888876558999999999999976          9999999999 99


Q ss_pred             ccccCcceee
Q 023563          220 EFCGKRAFFT  229 (280)
Q Consensus       220 ~~~g~~~~~~  229 (280)
                      +..|+++++.
T Consensus       233 ~~~~~~~~~~  242 (255)
T PRK11300        233 LANGTPEEIR  242 (255)
T ss_pred             EecCCHHHHh
Confidence            8888887765

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.96  E-value=3.6e-29  Score=226.65  Aligned_cols=169  Identities=21%  Similarity=0.191  Sum_probs=121.0

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------ccc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTR  119 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~  119 (280)
                      .++|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....         ..+
T Consensus         5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~   83 (269)
T PRK11831          5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLL-RLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR   83 (269)
T ss_pred             cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence            4589999999999988999999999999999999999999999999 99999842 222222111100         001


Q ss_pred             cccceeeeecccccc----------------------------cccccCchHHHHHH--------------hhhhccCCC
Q 023563          120 YGLDSIVTHDGVKLP----------------------------CCALTTLSSFRQKF--------------GSDAYDQVD  157 (280)
Q Consensus       120 ~~~~~v~~~~~~~~~----------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~  157 (280)
                      ..++++++.......                            .+...++....++.              +++|+.+|+
T Consensus        84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~  163 (269)
T PRK11831         84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD  163 (269)
T ss_pred             hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            122333332111000                            01111222211111              568999999


Q ss_pred             EEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +||||||++.      ..++++|++++++.|+|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       164 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~  232 (269)
T PRK11831        164 LIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLS----------IADHAYIVADKKIVAHGSAQALQ  232 (269)
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHH----------hhCEEEEEECCEEEEeCCHHHHh
Confidence            9999999654      458888988876558999999999999986          9999999999 999999988876

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.96  E-value=1.6e-29  Score=232.64  Aligned_cols=165  Identities=18%  Similarity=0.164  Sum_probs=118.7

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----ccccccccee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDSI  125 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~v  125 (280)
                      +++++|++++|+++.+|+|+||+|++||++||+||||||||||+ ++|.|+.. ....+.+....     ...+..++++
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl-~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~   80 (301)
T TIGR03522         2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTM-KIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL   80 (301)
T ss_pred             EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence            58999999999999999999999999999999999999999999 99999832 22222211100     0111222333


Q ss_pred             eeecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563          126 VTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA  164 (280)
Q Consensus       126 ~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP  164 (280)
                      ++.....                           ...+...++....++.              |+||+.+|++||||||
T Consensus        81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEP  160 (301)
T TIGR03522        81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEP  160 (301)
T ss_pred             cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            3221110                           0011112222222211              5689999999999999


Q ss_pred             ccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          165 QFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       165 ~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++..      .+++.|++++ + ++|||++||+++++.+          +||+|++|++ ++++.|+++++.
T Consensus       161 t~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~  220 (301)
T TIGR03522       161 TTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEA----------ICDRVIIINKGKIVADKKLDELS  220 (301)
T ss_pred             cccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHH
Confidence            7654      5788888885 3 7999999999999987          9999999999 999999999875

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.96  E-value=1.4e-29  Score=225.38  Aligned_cols=167  Identities=21%  Similarity=0.219  Sum_probs=116.9

Q ss_pred             cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------cccc
Q 023563           52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTRY  120 (280)
Q Consensus        52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~~  120 (280)
                      ||+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....         ..+.
T Consensus         1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (243)
T TIGR02315         1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLL-RCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR   79 (243)
T ss_pred             CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence            588999999998 78899999999999999999999999999999 99999742 122221111000         0011


Q ss_pred             ccceeeeeccccc-----------------------------------ccccccCchHHHHHH--------------hhh
Q 023563          121 GLDSIVTHDGVKL-----------------------------------PCCALTTLSSFRQKF--------------GSD  151 (280)
Q Consensus       121 ~~~~v~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~--------------a~a  151 (280)
                      .++++++......                                   ..+...++....++.              |++
T Consensus        80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a  159 (243)
T TIGR02315        80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA  159 (243)
T ss_pred             heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence            1222222111000                                   001111222221111              578


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      |+.+|++||||||++..      .+.++|++++++.|+|||++|||++++.+          +||++++|++ +++..|+
T Consensus       160 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~----------~~d~v~~l~~G~i~~~~~  229 (243)
T TIGR02315       160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKK----------YADRIVGLKAGEIVFDGA  229 (243)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hcCeEEEEECCEEEecCC
Confidence            99999999999997654      47888888876558999999999999876          9999999999 9888888


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      ++++.
T Consensus       230 ~~~~~  234 (243)
T TIGR02315       230 PSELD  234 (243)
T ss_pred             HHHhC
Confidence            87653

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.96  E-value=1.4e-29  Score=227.37  Aligned_cols=168  Identities=18%  Similarity=0.194  Sum_probs=123.2

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC-eeEEEecCCcccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG-RNVAVIKSNKDTRYG  121 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g-~~i~~~~~~~~~~~~  121 (280)
                      ++|+++||+++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+..        .+ ..+++++|+......
T Consensus         3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl-~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~   81 (251)
T PRK09544          3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLV-RVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT   81 (251)
T ss_pred             cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence            479999999999988899999999999999999999999999999 99999832        11 246677665422111


Q ss_pred             ----cceeee-ec----ccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HHHH
Q 023563          122 ----LDSIVT-HD----GVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLYD  172 (280)
Q Consensus       122 ----~~~v~~-~~----~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~  172 (280)
                          +..... ..    ......+...++.++.++.              +++++.+|++||||||++..      .+++
T Consensus        82 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~  161 (251)
T PRK09544         82 LPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD  161 (251)
T ss_pred             cChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence                000000 00    0011112223333332222              67899999999999997654      5788


Q ss_pred             HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceee
Q 023563          173 FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFT  229 (280)
Q Consensus       173 ~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~  229 (280)
                      .|++++++.|.|||++|||++++.+          +||++++|+++++..|+++++.
T Consensus       162 ~L~~~~~~~g~tiiivsH~~~~i~~----------~~d~i~~l~~~i~~~g~~~~~~  208 (251)
T PRK09544        162 LIDQLRRELDCAVLMVSHDLHLVMA----------KTDEVLCLNHHICCSGTPEVVS  208 (251)
T ss_pred             HHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEECCceEeeCCHHHHh
Confidence            8888876558999999999999876          9999999977888889988876

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.96  E-value=2.6e-29  Score=222.06  Aligned_cols=165  Identities=16%  Similarity=0.154  Sum_probs=116.1

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------cccccccce
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------KDTRYGLDS  124 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------~~~~~~~~~  124 (280)
                      |+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....       ...+..+++
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (232)
T cd03218           1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTF-YMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY   79 (232)
T ss_pred             CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence            4789999999988999999999999999999999999999999 99999732 22222211100       000112233


Q ss_pred             eeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563          125 IVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDE  163 (280)
Q Consensus       125 v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE  163 (280)
                      +++......                           ..+...++....++.              +++++.+|++|||||
T Consensus        80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE  159 (232)
T cd03218          80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE  159 (232)
T ss_pred             ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence            333211100                           001111222111111              568999999999999


Q ss_pred             cccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          164 AQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       164 P~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |++.      ..++++|++++++ |+|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       160 Pt~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~  221 (232)
T cd03218         160 PFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVRETLS----------ITDRAYIIYEGKVLAEGTPEEIA  221 (232)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCeEEEEeCHHHhh
Confidence            9654      4578888888765 9999999999998876          9999999999 888888877765

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.96  E-value=3.4e-29  Score=218.61  Aligned_cols=160  Identities=17%  Similarity=0.164  Sum_probs=111.6

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc----ccccccceeee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK----DTRYGLDSIVT  127 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~----~~~~~~~~v~~  127 (280)
                      |+++|++++|+++.+++|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....    ..+..+.++++
T Consensus         1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q   79 (213)
T cd03301           1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTL-RMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ   79 (213)
T ss_pred             CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence            4789999999988999999999999999999999999999999 99999832 222222111000    00111222222


Q ss_pred             ecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563          128 HDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF  166 (280)
Q Consensus       128 ~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~  166 (280)
                      .....                           ...+...++..+.++.              +++++.+|++||||||++
T Consensus        80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~  159 (213)
T cd03301          80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS  159 (213)
T ss_pred             ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            11100                           0011112222222211              568999999999999976


Q ss_pred             HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      ..      .+++.|++++++.|.|||++|||++++.+          +||++++|++ ++++.|
T Consensus       160 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~----------~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         160 NLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMT----------MADRIAVMNDGQIQQIG  213 (213)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hcCeEEEEECCEEEecC
Confidence            54      47888998887558999999999999876          8999999998 776554

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.8e-29  Score=230.86  Aligned_cols=167  Identities=13%  Similarity=0.196  Sum_probs=119.1

Q ss_pred             cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-----------
Q 023563           52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-----------  107 (280)
Q Consensus        52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-----------  107 (280)
                      +|+++||+++|++     +.+|+||||+|++||+++|+||||||||||+ ++|+|+..        +|.           
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~   80 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLI-QHLNGLLKPTSGKIIIDGVDITDKKVKLSD   80 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence            4899999999964     4699999999999999999999999999999 99999732        221           


Q ss_pred             ---eEEEecCCcccc---cccceeee----ecc--------cccccccccCch--HHHHHH--------------hhhhc
Q 023563          108 ---NVAVIKSNKDTR---YGLDSIVT----HDG--------VKLPCCALTTLS--SFRQKF--------------GSDAY  153 (280)
Q Consensus       108 ---~i~~~~~~~~~~---~~~~~v~~----~~~--------~~~~~~~~~~l~--~~~~~~--------------a~aL~  153 (280)
                         .++|++|.....   ..+...+.    ..+        .....+...++.  .+.++.              |+||+
T Consensus        81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~  160 (287)
T PRK13637         81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA  160 (287)
T ss_pred             HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence               233444432100   00000000    000        000111122332  222221              67899


Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|++||||||++.+      .++++|++++++.|+|||++|||++++.+          +||+|++|++ ++++.|+++
T Consensus       161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~----------~~drv~~l~~G~i~~~g~~~  230 (287)
T PRK13637        161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAK----------LADRIIVMNKGKCELQGTPR  230 (287)
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCHH
Confidence            999999999997654      58889999877569999999999999876          9999999999 999999998


Q ss_pred             eee
Q 023563          227 FFT  229 (280)
Q Consensus       227 ~~~  229 (280)
                      ++.
T Consensus       231 ~~~  233 (287)
T PRK13637        231 EVF  233 (287)
T ss_pred             HHH
Confidence            876

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.96  E-value=2.6e-29  Score=219.94  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=107.6

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------ccc
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTR  119 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~  119 (280)
                      ||+++|++++|++  +.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-....         ..+
T Consensus         1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFL-KLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR   79 (216)
T ss_pred             CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence            5899999999964  4699999999999999999999999999999 99999842 222222211100         011


Q ss_pred             cccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCE
Q 023563          120 YGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       120 ~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~l  158 (280)
                      ..+++++|......                           ..+...++..+.++.              |++|+.+|++
T Consensus        80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  159 (216)
T TIGR00960        80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL  159 (216)
T ss_pred             HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            22333333211110                           001111222221111              5789999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ||||||++.+      .++++|++++++ |.|||++|||++++.+          +||++++|++
T Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~----------~~d~i~~l~~  213 (216)
T TIGR00960       160 LLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDINLVET----------YRHRTLTLSR  213 (216)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence            9999997654      478888888765 9999999999999976          8999999987

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.7e-29  Score=231.13  Aligned_cols=166  Identities=17%  Similarity=0.164  Sum_probs=118.3

Q ss_pred             cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------
Q 023563           52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----------  115 (280)
Q Consensus        52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----------  115 (280)
                      ||+++|++++|++     +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...          
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   79 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLL-QHLNGLLQPTEGKVTVGDIVVSSTSKQKEI   79 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHH-HHHhcCCCCCCcEEEECCEECccccccccH
Confidence            5899999999963     2599999999999999999999999999999 99999832 11112111000          


Q ss_pred             cccccccceeeeecc-ccc---------------------------ccccccCch-HHHHHH--------------hhhh
Q 023563          116 KDTRYGLDSIVTHDG-VKL---------------------------PCCALTTLS-SFRQKF--------------GSDA  152 (280)
Q Consensus       116 ~~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l~-~~~~~~--------------a~aL  152 (280)
                      ...+..+++++|+.. ..+                           ..+...++. .+.++.              |++|
T Consensus        80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL  159 (288)
T PRK13643         80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL  159 (288)
T ss_pred             HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence            001222333433210 000                           001112221 121111              6789


Q ss_pred             ccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563          153 YDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR  225 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~  225 (280)
                      +.+|++||||||++.      ..++++|++++++ |.|||++|||++++.+          +||+|++|++ ++++.|++
T Consensus       160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~vtHd~~~~~~----------~~dri~~l~~G~i~~~g~~  228 (288)
T PRK13643        160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVAD----------YADYVYLLEKGHIISCGTP  228 (288)
T ss_pred             HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEECCH
Confidence            999999999999754      4578888888875 9999999999999976          9999999999 99999999


Q ss_pred             ceee
Q 023563          226 AFFT  229 (280)
Q Consensus       226 ~~~~  229 (280)
                      +++.
T Consensus       229 ~~~~  232 (288)
T PRK13643        229 SDVF  232 (288)
T ss_pred             HHHH
Confidence            9887

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.5e-29  Score=231.57  Aligned_cols=169  Identities=11%  Similarity=0.049  Sum_probs=122.2

Q ss_pred             cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-----CCeeEEEecCCcc-----
Q 023563           52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-----KGRNVAVIKSNKD-----  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-----~g~~i~~~~~~~~-----  117 (280)
                      +|+++||++.|+.    ..+|+||||+|++||++||+||||||||||+ ++|.|+..     ....+.+...+..     
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~-~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~   81 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSS-LAIMGLIDYPGRVMAEKLEFNGQDLQRISEK   81 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence            6999999999976    4799999999999999999999999999999 99999743     2222222211100     


Q ss_pred             --c---ccccceeeeeccc-c-----------------------------cccccccCchH---HHHHH-----------
Q 023563          118 --T---RYGLDSIVTHDGV-K-----------------------------LPCCALTTLSS---FRQKF-----------  148 (280)
Q Consensus       118 --~---~~~~~~v~~~~~~-~-----------------------------~~~~~~~~l~~---~~~~~-----------  148 (280)
                        .   +..+++++|.... +                             ...+...++.+   ..+++           
T Consensus        82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR  161 (326)
T PRK11022         82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR  161 (326)
T ss_pred             HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence              0   0123334432110 0                             01111223321   11111           


Q ss_pred             ---hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563          149 ---GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R  218 (280)
Q Consensus       149 ---a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~  218 (280)
                         |+||+.+|++||+|||++.+      +++++|++++++.|.|+|++|||++++.+          +||+|++|.+ +
T Consensus       162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~----------~adri~vm~~G~  231 (326)
T PRK11022        162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAE----------AAHKIIVMYAGQ  231 (326)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCE
Confidence               67899999999999997654      58899999987679999999999999986          9999999999 9


Q ss_pred             eccccCcceeeee
Q 023563          219 CEFCGKRAFFTLR  231 (280)
Q Consensus       219 i~~~g~~~~~~~~  231 (280)
                      +++.|+++++..+
T Consensus       232 ive~g~~~~~~~~  244 (326)
T PRK11022        232 VVETGKAHDIFRA  244 (326)
T ss_pred             EEEECCHHHHhhC
Confidence            9999998888643

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.6e-29  Score=227.64  Aligned_cols=168  Identities=15%  Similarity=0.142  Sum_probs=120.9

Q ss_pred             ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------cccc
Q 023563           51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTRY  120 (280)
Q Consensus        51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~~  120 (280)
                      ++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....        ..+.
T Consensus         4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl-~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~   82 (283)
T PRK13636          4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLF-QNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE   82 (283)
T ss_pred             ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence            4899999999996 57899999999999999999999999999999 99999832 222222111100        0112


Q ss_pred             ccceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCE
Q 023563          121 GLDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       121 ~~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~l  158 (280)
                      .++++++... ..+                           ..+...++..+.++.              |++|+.+|++
T Consensus        83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l  162 (283)
T PRK13636         83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV  162 (283)
T ss_pred             hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            2333333211 000                           001112222222221              5689999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||++.+      .++++|++++++.|.|||++|||++++.+          +||++++|++ ++++.|+++++.
T Consensus       163 LilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~----------~~dri~~l~~G~i~~~g~~~~~~  230 (283)
T PRK13636        163 LVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPL----------YCDNVFVMKEGRVILQGNPKEVF  230 (283)
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHh
Confidence            9999997654      47888988887559999999999999976          8999999999 999999998876

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=1.1e-28  Score=207.85  Aligned_cols=146  Identities=21%  Similarity=0.219  Sum_probs=109.2

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc-------cccccce
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD-------TRYGLDS  124 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~-------~~~~~~~  124 (280)
                      |+++|++++|+++++++++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.....       .+..+++
T Consensus         1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~   79 (163)
T cd03216           1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLM-KILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM   79 (163)
T ss_pred             CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence            4789999999988999999999999999999999999999999 99999843 3333332211100       1112223


Q ss_pred             eeeecccccccccccCchHHHHHHhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhc
Q 023563          125 IVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRS  198 (280)
Q Consensus       125 v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~  198 (280)
                      +++          +.+=...+-..+++++.+|++||||||++.      ..+++.|++++++ |.|+|++|||++++.+ 
T Consensus        80 ~~q----------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~-  147 (163)
T cd03216          80 VYQ----------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFE-  147 (163)
T ss_pred             EEe----------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH-
Confidence            322          111111222237899999999999999654      4588888888765 9999999999998876 


Q ss_pred             cCCccccccccceEEEeec-eec
Q 023563          199 FGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       199 ~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                               +||++++|++ +++
T Consensus       148 ---------~~d~~~~l~~g~i~  161 (163)
T cd03216         148 ---------IADRVTVLRDGRVV  161 (163)
T ss_pred             ---------hCCEEEEEECCEEE
Confidence                     8999999998 664

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.3e-29  Score=229.38  Aligned_cols=167  Identities=16%  Similarity=0.142  Sum_probs=119.7

Q ss_pred             cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------
Q 023563           52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------  116 (280)
Q Consensus        52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------  116 (280)
                      .|+++||+++|++     +.+|+||||+|++||+++|+||||||||||+ ++|.|+.. ....+.+.....         
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   80 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLL-QHLNGLLQPTSGTVTIGERVITAGKKNKKL   80 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEECccccccchH
Confidence            3899999999964     4699999999999999999999999999999 99999732 112222111100         


Q ss_pred             -ccccccceeeeecc-ccc---------------------------ccccccCch-HHHHHH--------------hhhh
Q 023563          117 -DTRYGLDSIVTHDG-VKL---------------------------PCCALTTLS-SFRQKF--------------GSDA  152 (280)
Q Consensus       117 -~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l~-~~~~~~--------------a~aL  152 (280)
                       ..+..+++++|... ..+                           ..+...++. .+.++.              |++|
T Consensus        81 ~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL  160 (290)
T PRK13634         81 KPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL  160 (290)
T ss_pred             HHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence             01122333333210 000                           011122332 222221              6789


Q ss_pred             ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563          153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR  225 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~  225 (280)
                      +.+|++||||||++.+      .++++|++++++.|.|||++|||++++.+          +||+|++|++ ++++.|++
T Consensus       161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~----------~~drv~~l~~G~i~~~g~~  230 (290)
T PRK13634        161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAAR----------YADQIVVMHKGTVFLQGTP  230 (290)
T ss_pred             HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCH
Confidence            9999999999997654      48888999877669999999999999976          9999999999 99999999


Q ss_pred             ceee
Q 023563          226 AFFT  229 (280)
Q Consensus       226 ~~~~  229 (280)
                      +++.
T Consensus       231 ~~~~  234 (290)
T PRK13634        231 REIF  234 (290)
T ss_pred             HHHh
Confidence            8876

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.6e-29  Score=227.68  Aligned_cols=166  Identities=16%  Similarity=0.150  Sum_probs=119.0

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------cccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTRYGL  122 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~~~~  122 (280)
                      ||+++||+++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-....        ..+..+
T Consensus         1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i   79 (271)
T PRK13638          1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLF-MNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV   79 (271)
T ss_pred             CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence            58999999999988899999999999999999999999999999 99999732 122221111000        011223


Q ss_pred             ceeeeeccc-cc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          123 DSIVTHDGV-KL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       123 ~~v~~~~~~-~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      +++++.... ..                           ..+...++..+.++.              |++|+.+|++||
T Consensus        80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lll  159 (271)
T PRK13638         80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLL  159 (271)
T ss_pred             EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            333332110 00                           001111222221111              578999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||++..      .++++|++++++ |.|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       160 LDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~  224 (271)
T PRK13638        160 LDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYE----------ISDAVYVLRQGQILTHGAPGEVF  224 (271)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHh
Confidence            99997654      578889888765 9999999999999976          9999999999 999999988876

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.96  E-value=3.5e-29  Score=233.33  Aligned_cols=170  Identities=14%  Similarity=0.091  Sum_probs=121.3

Q ss_pred             CccEEEcCceEEeCC-------------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC
Q 023563           50 HSMVSPRPPLFSLQN-------------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN  115 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~-------------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~  115 (280)
                      +++|+++||+++|+.             ..+++||||+|++||+++|+|+||||||||+ ++|+|+.. ....|.+...+
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLl-k~i~Gl~~p~~G~I~~~G~~   84 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFA-RAIIGLVKATDGEVAWLGKD   84 (331)
T ss_pred             CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCcEEEECCEE
Confidence            468999999999952             5699999999999999999999999999999 99999732 11222111110


Q ss_pred             c---------ccccccceeeeecc-cccc------------------------------cccccCc-hHHHHHH------
Q 023563          116 K---------DTRYGLDSIVTHDG-VKLP------------------------------CCALTTL-SSFRQKF------  148 (280)
Q Consensus       116 ~---------~~~~~~~~v~~~~~-~~~~------------------------------~~~~~~l-~~~~~~~------  148 (280)
                      .         ..+..+++++|... .+.+                              .+...++ ..+.+++      
T Consensus        85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg  164 (331)
T PRK15079         85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG  164 (331)
T ss_pred             CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence            0         01122333333210 0000                              0111122 1122221      


Q ss_pred             --------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEE
Q 023563          149 --------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTK  214 (280)
Q Consensus       149 --------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~  214 (280)
                              |+||+.+|++||+|||++.+      +++++|+++.++.|.|+|++|||++++.+          +||+|++
T Consensus       165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~----------~~dri~v  234 (331)
T PRK15079        165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKH----------ISDRVLV  234 (331)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hCCEEEE
Confidence                    67899999999999997654      58889999987669999999999999986          9999999


Q ss_pred             eec-eeccccCcceeee
Q 023563          215 LTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       215 L~~-~i~~~g~~~~~~~  230 (280)
                      |.+ ++++.|+++++..
T Consensus       235 l~~G~ive~g~~~~i~~  251 (331)
T PRK15079        235 MYLGHAVELGTYDEVYH  251 (331)
T ss_pred             EECCEEEEEcCHHHHHc
Confidence            999 9999999888764

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.9e-29  Score=223.28  Aligned_cols=166  Identities=16%  Similarity=0.162  Sum_probs=117.7

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------cccccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------KDTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------~~~~~~~~  123 (280)
                      +|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....       ...+..++
T Consensus         3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   81 (241)
T PRK10895          3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTF-YMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG   81 (241)
T ss_pred             eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence            79999999999988999999999999999999999999999999 99999732 22222211100       00111222


Q ss_pred             eeeeeccccc----------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563          124 SIVTHDGVKL----------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGI  161 (280)
Q Consensus       124 ~v~~~~~~~~----------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL  161 (280)
                      ++++......                            ..+...++....++.              |++++.+|++|||
T Consensus        82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  161 (241)
T PRK10895         82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILL  161 (241)
T ss_pred             EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            2222211000                            001111222211111              5689999999999


Q ss_pred             eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||++..      .+++.+.+++++ |.|||++||+++++.+          +||++++|++ ++++.|+++++.
T Consensus       162 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~----------~~d~v~~l~~G~i~~~~~~~~~~  225 (241)
T PRK10895        162 DEPFAGVDPISVIDIKRIIEHLRDS-GLGVLITDHNVRETLA----------VCERAYIVSQGHLIAHGTPTEIL  225 (241)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHH----------hcCEEEEEeCCeEEeeCCHHHHh
Confidence            9997644      477888888764 9999999999998876          9999999999 998899988776

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.96  E-value=7.4e-29  Score=217.80  Aligned_cols=162  Identities=23%  Similarity=0.166  Sum_probs=111.8

Q ss_pred             EEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCe--------------eEEEec
Q 023563           53 VSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGR--------------NVAVIK  113 (280)
Q Consensus        53 l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~--------------~i~~~~  113 (280)
                      |+++|++++|++    +.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ...              .+++++
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~   79 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLL-RIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF   79 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence            478999999987    7899999999999999999999999999999 99999832 222              234444


Q ss_pred             CCccccc--ccceeee---e-cc--------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563          114 SNKDTRY--GLDSIVT---H-DG--------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ  165 (280)
Q Consensus       114 ~~~~~~~--~~~~v~~---~-~~--------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~  165 (280)
                      |......  .+...+.   . ..        .....+...++.++.++.              |++|+.+|++||||||+
T Consensus        80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt  159 (220)
T cd03293          80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF  159 (220)
T ss_pred             cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence            4321100  0000000   0 00        000011112232222211              67899999999999997


Q ss_pred             cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee--c-eeccccCc
Q 023563          166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT--A-RCEFCGKR  225 (280)
Q Consensus       166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~--~-~i~~~g~~  225 (280)
                      +..      .++++|+++.++.|+|||++||+++++.+          +||++++|+  + +++..++.
T Consensus       160 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~----------~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         160 SALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVF----------LADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH----------hCCEEEEEECCCCEEEEEEEe
Confidence            654      58888888876558999999999998876          999999999  6 77665543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.96  E-value=4e-29  Score=220.78  Aligned_cols=166  Identities=16%  Similarity=0.174  Sum_probs=116.1

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------ccccccce
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGLDS  124 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~~~  124 (280)
                      |+++||++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....       ..+..+++
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (230)
T TIGR03410         1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLL-KTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY   79 (230)
T ss_pred             CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence            4789999999988999999999999999999999999999999 99999832 222222211000       00112223


Q ss_pred             eeeecccccc------------------------cccccC-chHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563          125 IVTHDGVKLP------------------------CCALTT-LSSFRQKF--------------GSDAYDQVDVIGIDEAQ  165 (280)
Q Consensus       125 v~~~~~~~~~------------------------~~~~~~-l~~~~~~~--------------a~aL~~~p~lLlLDEP~  165 (280)
                      +++.......                        .+...+ +....++.              +++|+.+|++||||||+
T Consensus        80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt  159 (230)
T TIGR03410        80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT  159 (230)
T ss_pred             eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence            3222111000                        000000 11111111              56899999999999996


Q ss_pred             cH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          166 FF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       166 ~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +.      ..++++|.+++++.|+|||++||+++++.+          +||++++|++ +++..|+++++.
T Consensus       160 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~----------~~d~v~~l~~g~i~~~~~~~~~~  220 (230)
T TIGR03410       160 EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARE----------LADRYYVMERGRVVASGAGDELD  220 (230)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCHHHcC
Confidence            54      457888888876558999999999999986          8999999999 999888887763

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.96  E-value=5e-29  Score=226.79  Aligned_cols=172  Identities=15%  Similarity=0.105  Sum_probs=123.3

Q ss_pred             cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C-C----eeEEEecCCc-----
Q 023563           52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K-G----RNVAVIKSNK-----  116 (280)
Q Consensus        52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~-g----~~i~~~~~~~-----  116 (280)
                      +|+++||+..|..    ..+++||||+|++||++||+|.|||||||+. +.|.|+.. . +    ..+.+-..+.     
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~-~aim~llp~~~~~i~~G~i~f~g~~l~~l~~   79 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLA-KAIMGLLPKPNARIVGGEILFDGKDLLSLSE   79 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHH-HHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence            4789999999943    5799999999999999999999999999999 88888632 1 1    1222221110     


Q ss_pred             ----cc-ccccceeeeeccc-------------------------------ccccccccCch---HHHHHH---------
Q 023563          117 ----DT-RYGLDSIVTHDGV-------------------------------KLPCCALTTLS---SFRQKF---------  148 (280)
Q Consensus       117 ----~~-~~~~~~v~~~~~~-------------------------------~~~~~~~~~l~---~~~~~~---------  148 (280)
                          .. ...+++++|....                               ....+..+++.   ...+.|         
T Consensus        80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr  159 (316)
T COG0444          80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR  159 (316)
T ss_pred             HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence                00 0122334432100                               01111122221   122222         


Q ss_pred             -----hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 -----GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 -----a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                           |.||+.+|++||.||||+++      +++++|+++.++.|.++|+||||+..+.+          +||||++|..
T Consensus       160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~----------~aDri~VMYa  229 (316)
T COG0444         160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAE----------IADRVAVMYA  229 (316)
T ss_pred             HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hcceEEEEEC
Confidence                 56899999999999997766      48999999999889999999999999997          9999999999


Q ss_pred             -eeccccCcceeeeeecC
Q 023563          218 -RCEFCGKRAFFTLRKTE  234 (280)
Q Consensus       218 -~i~~~g~~~~~~~~~~~  234 (280)
                       ++++.|++++++..+..
T Consensus       230 G~iVE~g~~~~i~~~P~H  247 (316)
T COG0444         230 GRIVEEGPVEEIFKNPKH  247 (316)
T ss_pred             cEEEEeCCHHHHhcCCCC
Confidence             99999999999865443

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=6.3e-29  Score=225.80  Aligned_cols=167  Identities=24%  Similarity=0.255  Sum_probs=118.7

Q ss_pred             ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------cccccc
Q 023563           51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~  122 (280)
                      ++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....      ..+..+
T Consensus         3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   81 (274)
T PRK13647          3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLL-LHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV   81 (274)
T ss_pred             ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence            4799999999996 56799999999999999999999999999999 99999732 122221111000      001122


Q ss_pred             ceeeeecc-cc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          123 DSIVTHDG-VK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       123 ~~v~~~~~-~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      ++++|... ..                           ...+...++..+.++.              |+||+.+|++||
T Consensus        82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll  161 (274)
T PRK13647         82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV  161 (274)
T ss_pred             EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            33333210 00                           0011122232222211              678999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||++.+      .++++|++++++ |.|||++|||++++.+          +||++++|++ ++++.|+++++.
T Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~  226 (274)
T PRK13647        162 LDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAE----------WADQVIVLKEGRVLAEGDKSLLT  226 (274)
T ss_pred             EECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCHHHhc
Confidence            99997654      588899998876 9999999999999976          9999999999 999999987543

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.96  E-value=5.4e-29  Score=218.08  Aligned_cols=159  Identities=20%  Similarity=0.213  Sum_probs=111.1

Q ss_pred             cEEEcCceEEeCCe----eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccc
Q 023563           52 MVSPRPPLFSLQNR----NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYG  121 (280)
Q Consensus        52 ~l~~~~ls~~y~~~----~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~  121 (280)
                      ||+++|++++|+++    .+++++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....     ...+..
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~   79 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTL-RMLAGLLEPDAGFATVDGFDVVKEPAEARRR   79 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence            58899999999876    799999999999999999999999999999 99999842 22222111100     001112


Q ss_pred             cceeeeecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          122 LDSIVTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       122 ~~~v~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      ++++++.....                           ...+...++.+..++.              +++++.+|++||
T Consensus        80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill  159 (218)
T cd03266          80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL  159 (218)
T ss_pred             EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence            22222211100                           0011122333222221              568999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      ||||++..      .+++.|+++.++ |.|||++|||++++.+          +||++++|++ +++..
T Consensus       160 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~----------~~d~i~~l~~G~i~~~  217 (218)
T cd03266         160 LDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVER----------LCDRVVVLHRGRVVYE  217 (218)
T ss_pred             EcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hcCEEEEEECCEEeec
Confidence            99996544      588888888765 9999999999999876          9999999998 77654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.96  E-value=8.8e-29  Score=223.05  Aligned_cols=165  Identities=15%  Similarity=0.121  Sum_probs=116.5

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee--------------EEEecCC
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN--------------VAVIKSN  115 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~--------------i~~~~~~  115 (280)
                      ++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....              +++++|.
T Consensus        11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLl-k~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~   89 (257)
T PRK11247         11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLL-RLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD   89 (257)
T ss_pred             CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence            579999999999988999999999999999999999999999999 99999742 2222              3344443


Q ss_pred             ccccc--ccceeee---ec---ccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH-----
Q 023563          116 KDTRY--GLDSIVT---HD---GVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE-----  168 (280)
Q Consensus       116 ~~~~~--~~~~v~~---~~---~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~-----  168 (280)
                      .....  .+...+.   ..   ......+...++....++.              +++|+.+|++||||||++.+     
T Consensus        90 ~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~  169 (257)
T PRK11247         90 ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTR  169 (257)
T ss_pred             ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence            21100  0000000   00   0000111122232222111              57899999999999997654     


Q ss_pred             -HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          169 -DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       169 -~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                       .+.++|++++++.|.|||++|||++++.+          +||++++|++ +++..++.+
T Consensus       170 ~~l~~~L~~~~~~~~~tviivsHd~~~~~~----------~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        170 IEMQDLIESLWQQHGFTVLLVTHDVSEAVA----------MADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEeecccc
Confidence             47788888876558999999999999876          9999999999 888777654

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.96  E-value=7.7e-29  Score=221.55  Aligned_cols=166  Identities=17%  Similarity=0.191  Sum_probs=118.1

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC--------------c
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN--------------K  116 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~--------------~  116 (280)
                      ||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-...              .
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (250)
T PRK11264          3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLL-RCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR   81 (250)
T ss_pred             cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence            79999999999988899999999999999999999999999999 99999732 22222111100              0


Q ss_pred             ccccccceeeeecccccc----------------------------cccccCchHHHHHH--------------hhhhcc
Q 023563          117 DTRYGLDSIVTHDGVKLP----------------------------CCALTTLSSFRQKF--------------GSDAYD  154 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~----------------------------~~~~~~l~~~~~~~--------------a~aL~~  154 (280)
                      ..+..++++++.......                            .+...++....++.              |++|+.
T Consensus        82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~  161 (250)
T PRK11264         82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM  161 (250)
T ss_pred             HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence            011223333332111000                            00111121111111              578999


Q ss_pred             CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcce
Q 023563          155 QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAF  227 (280)
Q Consensus       155 ~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~  227 (280)
                      +|++||||||++..      .+++.|+++.++ |.|||++|||++++.+          +||++++|++ +++..|++++
T Consensus       162 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~  230 (250)
T PRK11264        162 RPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARD----------VADRAIFMDQGRIVEQGPAKA  230 (250)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH----------hcCEEEEEECCEEEEeCCHHH
Confidence            99999999997654      578888888765 9999999999999876          9999999999 9888888887


Q ss_pred             ee
Q 023563          228 FT  229 (280)
Q Consensus       228 ~~  229 (280)
                      +.
T Consensus       231 ~~  232 (250)
T PRK11264        231 LF  232 (250)
T ss_pred             Hh
Confidence            65

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4e-29  Score=232.61  Aligned_cols=170  Identities=15%  Similarity=0.113  Sum_probs=121.5

Q ss_pred             CccEEEcCceEEeC----------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--
Q 023563           50 HSMVSPRPPLFSLQ----------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~----------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--  116 (280)
                      .++|+++||++.|+          ...+|+||||+|++||++||+|+||||||||+ ++|.|+.. ....+.+...+.  
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl-~~l~gl~~p~~G~i~~~g~~l~~   81 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLA-RLLTMIETPTGGELYYQGQDLLK   81 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHH-HHHHcCCCCCCcEEEECCEEcCc
Confidence            35899999999995          25799999999999999999999999999999 99999732 111121111000  


Q ss_pred             -------ccccccceeeeecc-cc-----------------------------cccccccCch-HHHHHH----------
Q 023563          117 -------DTRYGLDSIVTHDG-VK-----------------------------LPCCALTTLS-SFRQKF----------  148 (280)
Q Consensus       117 -------~~~~~~~~v~~~~~-~~-----------------------------~~~~~~~~l~-~~~~~~----------  148 (280)
                             ..+..+++++|... .+                             ...+...++. ..++++          
T Consensus        82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q  161 (327)
T PRK11308         82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ  161 (327)
T ss_pred             CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence                   01122333333210 00                             0011112221 122211          


Q ss_pred             ----hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-
Q 023563          149 ----GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-  217 (280)
Q Consensus       149 ----a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-  217 (280)
                          |+||+.+|++||+|||++.+      .++++|+++.++.|.|+|++|||++++.+          +||+|++|.+ 
T Consensus       162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~----------~adrv~vm~~G  231 (327)
T PRK11308        162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEH----------IADEVMVMYLG  231 (327)
T ss_pred             HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hCCEEEEEECC
Confidence                67899999999999997654      58889999987679999999999999986          9999999999 


Q ss_pred             eeccccCcceeee
Q 023563          218 RCEFCGKRAFFTL  230 (280)
Q Consensus       218 ~i~~~g~~~~~~~  230 (280)
                      ++++.|++++++.
T Consensus       232 ~ive~g~~~~~~~  244 (327)
T PRK11308        232 RCVEKGTKEQIFN  244 (327)
T ss_pred             EEEEECCHHHHhc
Confidence            9999999888764

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.96  E-value=3.4e-29  Score=240.82  Aligned_cols=168  Identities=20%  Similarity=0.190  Sum_probs=124.7

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCcccccc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTRYG  121 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~~~  121 (280)
                      .++++++|++|+|++..+|++|||++.+||+++|+|.||||||||+ |+|+|..        ++|+.+.+..+......+
T Consensus         6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLm-KiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G   84 (500)
T COG1129           6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLM-KILSGVYPPDSGEILIDGKPVAFSSPRDALAAG   84 (500)
T ss_pred             cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHH-HHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence            4589999999999999999999999999999999999999999999 9999973        345544433333233444


Q ss_pred             cceeeeeccccccc-------------------------------ccccCc----h------HHHHH----HhhhhccCC
Q 023563          122 LDSIVTHDGVKLPC-------------------------------CALTTL----S------SFRQK----FGSDAYDQV  156 (280)
Q Consensus       122 ~~~v~~~~~~~~~~-------------------------------~~~~~l----~------~~~~~----~a~aL~~~p  156 (280)
                      +..+.|...+....                               +...++    .      ...++    .|+|+..++
T Consensus        85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~a  164 (500)
T COG1129          85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDA  164 (500)
T ss_pred             cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence            44444422111000                               000000    0      00010    167899999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC-ccee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK-RAFF  228 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~-~~~~  228 (280)
                      ++|||||||+.+      .+++++++++++ |++||++||.++++.+          +||||.+|++ +.+...+ ..++
T Consensus       165 rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei~~----------i~DritVlRDG~~v~~~~~~~~~  233 (500)
T COG1129         165 RVLILDEPTAALTVKETERLFDLIRRLKAQ-GVAIIYISHRLDEVFE----------IADRITVLRDGRVVGTRPTAAET  233 (500)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHH----------hcCEEEEEeCCEEeeecccccCC
Confidence            999999998753      489999999986 9999999999999987          9999999999 9888888 3555


Q ss_pred             e
Q 023563          229 T  229 (280)
Q Consensus       229 ~  229 (280)
                      .
T Consensus       234 ~  234 (500)
T COG1129         234 S  234 (500)
T ss_pred             C
Confidence            4

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.2e-29  Score=231.82  Aligned_cols=172  Identities=15%  Similarity=0.090  Sum_probs=122.5

Q ss_pred             CCCCCccEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEec----C-
Q 023563           46 PKFIHSMVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIK----S-  114 (280)
Q Consensus        46 ~~~~~~~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~----~-  114 (280)
                      |....++|+++|++++|++     +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+..    . 
T Consensus        15 ~~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl-~~L~Gl~~p~~G~I~i~g~~~~~~   93 (320)
T PRK13631         15 PLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLV-THFNGLIKSKYGTIQVGDIYIGDK   93 (320)
T ss_pred             CCCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEEECCEEcccc
Confidence            3334568999999999964     3599999999999999999999999999999 99999832 122222110    0 


Q ss_pred             -----------------Ccccccccceeeeecc-ccccc---------------------------ccccCch-HHHHHH
Q 023563          115 -----------------NKDTRYGLDSIVTHDG-VKLPC---------------------------CALTTLS-SFRQKF  148 (280)
Q Consensus       115 -----------------~~~~~~~~~~v~~~~~-~~~~~---------------------------~~~~~l~-~~~~~~  148 (280)
                                       ....+..+++++|... ..+..                           +...++. .+.++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~  173 (320)
T PRK13631         94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS  173 (320)
T ss_pred             cccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence                             0011223444444321 11100                           1111221 111111


Q ss_pred             --------------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc
Q 023563          149 --------------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL  208 (280)
Q Consensus       149 --------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~  208 (280)
                                    |++|+.+|++||||||++.+      .+++.|.+++++ |.|||++|||++++.+          +
T Consensus       174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~----------~  242 (320)
T PRK13631        174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLE----------V  242 (320)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH----------h
Confidence                          67899999999999997654      478888888765 9999999999998876          8


Q ss_pred             cceEEEeec-eeccccCcceee
Q 023563          209 ADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       209 aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||+|++|++ +++..|+++++.
T Consensus       243 adri~vl~~G~i~~~g~~~~~~  264 (320)
T PRK13631        243 ADEVIVMDKGKILKTGTPYEIF  264 (320)
T ss_pred             CCEEEEEECCEEEEeCCHHHHh
Confidence            999999999 999999999886

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.96  E-value=1.2e-28  Score=221.58  Aligned_cols=168  Identities=17%  Similarity=0.182  Sum_probs=120.1

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------------  115 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------------  115 (280)
                      +++|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...             
T Consensus         3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (257)
T PRK10619          3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFL-RCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV   81 (257)
T ss_pred             CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence            4579999999999988999999999999999999999999999999 99999832 11222111100             


Q ss_pred             ------cccccccceeeeecccc----------------------------cccccccCchHHH-HHH------------
Q 023563          116 ------KDTRYGLDSIVTHDGVK----------------------------LPCCALTTLSSFR-QKF------------  148 (280)
Q Consensus       116 ------~~~~~~~~~v~~~~~~~----------------------------~~~~~~~~l~~~~-~~~------------  148 (280)
                            ...+..++++++.....                            ...+...++.... ++.            
T Consensus        82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv  161 (257)
T PRK10619         82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRV  161 (257)
T ss_pred             ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence                  00112233333321100                            0011112222221 111            


Q ss_pred             --hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563          149 --GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC  219 (280)
Q Consensus       149 --a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i  219 (280)
                        +++|+.+|++||||||++.+      .+.++|++++++ |+|||++|||++++.+          +||++++|++ ++
T Consensus       162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH~~~~~~~----------~~d~i~~l~~G~i  230 (257)
T PRK10619        162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARH----------VSSHVIFLHQGKI  230 (257)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH----------hcCEEEEEECCEE
Confidence              67899999999999996654      478888888765 9999999999999986          8999999999 99


Q ss_pred             ccccCcceee
Q 023563          220 EFCGKRAFFT  229 (280)
Q Consensus       220 ~~~g~~~~~~  229 (280)
                      +..|+++++.
T Consensus       231 ~~~~~~~~~~  240 (257)
T PRK10619        231 EEEGAPEQLF  240 (257)
T ss_pred             EEeCCHHHhh
Confidence            9888888765

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.4e-29  Score=228.87  Aligned_cols=167  Identities=16%  Similarity=0.115  Sum_probs=119.2

Q ss_pred             cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------
Q 023563           52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----------  115 (280)
Q Consensus        52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----------  115 (280)
                      .|+++||+++|++     +.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....+.+....          
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~   80 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLI-QNINALLKPTTGTVTVDDITITHKTKDKYI   80 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEECccccccchH
Confidence            4899999999964     3699999999999999999999999999999 99999832 11222111100          


Q ss_pred             cccccccceeeeecc-ccc---------------------------ccccccCch-HHHHHH--------------hhhh
Q 023563          116 KDTRYGLDSIVTHDG-VKL---------------------------PCCALTTLS-SFRQKF--------------GSDA  152 (280)
Q Consensus       116 ~~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l~-~~~~~~--------------a~aL  152 (280)
                      ...+..+++++|... ..+                           ..+...++. .+.++.              |++|
T Consensus        81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL  160 (286)
T PRK13646         81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL  160 (286)
T ss_pred             HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence            011222333333210 000                           011112232 222211              6789


Q ss_pred             ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563          153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR  225 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~  225 (280)
                      +.+|++||||||++..      .++++|++++++.|+|||++|||++++.+          +||++++|++ ++++.|++
T Consensus       161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~----------~~dri~~l~~G~i~~~g~~  230 (286)
T PRK13646        161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVAR----------YADEVIVMKEGSIVSQTSP  230 (286)
T ss_pred             HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEECCH
Confidence            9999999999997654      48888999876569999999999999876          8999999999 99999999


Q ss_pred             ceee
Q 023563          226 AFFT  229 (280)
Q Consensus       226 ~~~~  229 (280)
                      +++.
T Consensus       231 ~~~~  234 (286)
T PRK13646        231 KELF  234 (286)
T ss_pred             HHHH
Confidence            8876

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.96  E-value=1e-28  Score=222.65  Aligned_cols=168  Identities=18%  Similarity=0.240  Sum_probs=120.1

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC----CeeEEEecCCc---------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK----GRNVAVIKSNK---------  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~----g~~i~~~~~~~---------  116 (280)
                      .++|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+ ++|+|+...    +..+.+.....         
T Consensus         2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~   80 (262)
T PRK09984          2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLL-RHLSGLITGDKSAGSHIELLGRTVQREGRLARD   80 (262)
T ss_pred             CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHH-HHHhccCCCCCCCceEEEECCEecccccccchh
Confidence            3589999999999999999999999999999999999999999999 999998532    12332211110         


Q ss_pred             --ccccccceeeeecccccc-----------------------------------cccccCchHHHHHH-----------
Q 023563          117 --DTRYGLDSIVTHDGVKLP-----------------------------------CCALTTLSSFRQKF-----------  148 (280)
Q Consensus       117 --~~~~~~~~v~~~~~~~~~-----------------------------------~~~~~~l~~~~~~~-----------  148 (280)
                        ..+..+.++++.......                                   .+...++....++.           
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  160 (262)
T PRK09984         81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR  160 (262)
T ss_pred             HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHH
Confidence              001123333332111000                                   00111222111111           


Q ss_pred             ---hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563          149 ---GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R  218 (280)
Q Consensus       149 ---a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~  218 (280)
                         +++++.+|++||||||++.+      .+.+.|++++++.|.|||++|||++++.+          +||++++|++ +
T Consensus       161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~----------~~d~i~~l~~g~  230 (262)
T PRK09984        161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALR----------YCERIVALRQGH  230 (262)
T ss_pred             HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCE
Confidence               56899999999999997654      47888888876558999999999999876          9999999999 8


Q ss_pred             eccccCccee
Q 023563          219 CEFCGKRAFF  228 (280)
Q Consensus       219 i~~~g~~~~~  228 (280)
                      ++..|+++++
T Consensus       231 i~~~g~~~~~  240 (262)
T PRK09984        231 VFYDGSSQQF  240 (262)
T ss_pred             EEEeCCHHHh
Confidence            9888888775

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.96  E-value=1.2e-28  Score=229.72  Aligned_cols=173  Identities=13%  Similarity=0.067  Sum_probs=124.2

Q ss_pred             CCCccEEEcCceEEeC----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC----CeeEEEecCCcc--
Q 023563           48 FIHSMVSPRPPLFSLQ----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK----GRNVAVIKSNKD--  117 (280)
Q Consensus        48 ~~~~~l~~~~ls~~y~----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~----g~~i~~~~~~~~--  117 (280)
                      ...++|+++|+++.|+    ...+|+||||+|++||+++|+|+||||||||+ ++|+|+...    ...|.+...+..  
T Consensus         8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~-~~l~Gl~~p~~~~sG~I~~~G~~i~~~   86 (330)
T PRK09473          8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTA-FALMGLLAANGRIGGSATFNGREILNL   86 (330)
T ss_pred             CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHH-HHHHcCCCCCCCCCeEEEECCEECCcC
Confidence            3456899999999994    35799999999999999999999999999999 999998532    233322211100  


Q ss_pred             -------cc-cccceeeeecc-cc-----------------------------cccccccCchH---HHHHH--------
Q 023563          118 -------TR-YGLDSIVTHDG-VK-----------------------------LPCCALTTLSS---FRQKF--------  148 (280)
Q Consensus       118 -------~~-~~~~~v~~~~~-~~-----------------------------~~~~~~~~l~~---~~~~~--------  148 (280)
                             .+ ..+++++|... .+                             ...+...++..   ..+++        
T Consensus        87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~  166 (330)
T PRK09473         87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGM  166 (330)
T ss_pred             CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHH
Confidence                   00 12334443211 00                             00011122221   11111        


Q ss_pred             ------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          149 ------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       149 ------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                            |+||+.+|++||+|||++.+      +++++|++++++.|.|+|++|||++.+.+          +||+|++|+
T Consensus       167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~----------~~Dri~vm~  236 (330)
T PRK09473        167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAG----------ICDKVLVMY  236 (330)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHH----------hCCEEEEEE
Confidence                  67899999999999997654      58889999987779999999999999986          999999999


Q ss_pred             c-eeccccCcceeeee
Q 023563          217 A-RCEFCGKRAFFTLR  231 (280)
Q Consensus       217 ~-~i~~~g~~~~~~~~  231 (280)
                      + ++++.|+++++...
T Consensus       237 ~G~ive~g~~~~i~~~  252 (330)
T PRK09473        237 AGRTMEYGNARDVFYQ  252 (330)
T ss_pred             CCEEEEECCHHHHHhC
Confidence            9 99999999888643

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.1e-29  Score=230.79  Aligned_cols=168  Identities=13%  Similarity=0.117  Sum_probs=121.0

Q ss_pred             ccEEEcCceEEe----CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-----CCeeEEEecCCcc----
Q 023563           51 SMVSPRPPLFSL----QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-----KGRNVAVIKSNKD----  117 (280)
Q Consensus        51 ~~l~~~~ls~~y----~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-----~g~~i~~~~~~~~----  117 (280)
                      ++|+++||+++|    +...+|+||||+|.+||+++|+|+||||||||+ ++|.|+..     ....+.+-.++..    
T Consensus         2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl-~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~   80 (330)
T PRK15093          2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIA-KAICGVTKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHH-HHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence            479999999999    446799999999999999999999999999999 99999842     2223322111100    


Q ss_pred             --c----ccccceeeeeccc-----------------------------------ccccccccCchH---HHHHH-----
Q 023563          118 --T----RYGLDSIVTHDGV-----------------------------------KLPCCALTTLSS---FRQKF-----  148 (280)
Q Consensus       118 --~----~~~~~~v~~~~~~-----------------------------------~~~~~~~~~l~~---~~~~~-----  148 (280)
                        .    +..+++++|....                                   ....+...++..   ..+++     
T Consensus        81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS  160 (330)
T PRK15093         81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT  160 (330)
T ss_pred             HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence              0    0123333332110                                   000111122221   11111     


Q ss_pred             ---------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEE
Q 023563          149 ---------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVT  213 (280)
Q Consensus       149 ---------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~  213 (280)
                               |+||+.+|++||+|||++.+      +++++|+++.++.|.|||+||||++++.+          +||+|+
T Consensus       161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~----------~~dri~  230 (330)
T PRK15093        161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQ----------WADKIN  230 (330)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH----------hCCEEE
Confidence                     67899999999999997654      58899999987669999999999999986          999999


Q ss_pred             Eeec-eeccccCcceee
Q 023563          214 KLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       214 ~L~~-~i~~~g~~~~~~  229 (280)
                      +|.+ +++..|+++++.
T Consensus       231 vm~~G~ive~g~~~~i~  247 (330)
T PRK15093        231 VLYCGQTVETAPSKELV  247 (330)
T ss_pred             EEECCEEEEECCHHHHH
Confidence            9999 999999988775

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.3e-29  Score=226.91  Aligned_cols=165  Identities=15%  Similarity=0.134  Sum_probs=117.0

Q ss_pred             cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------ccccccc
Q 023563           52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------KDTRYGL  122 (280)
Q Consensus        52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------~~~~~~~  122 (280)
                      ||+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+....       ...+..+
T Consensus         1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (274)
T PRK13644          1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLA-LHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV   79 (274)
T ss_pred             CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence            589999999995 56799999999999999999999999999999 99999832 22222211110       0011223


Q ss_pred             ceeeeeccc-ccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          123 DSIVTHDGV-KLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       123 ~~v~~~~~~-~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      +++++.... ...                           .+...++..+.++.              |+||+.+|++||
T Consensus        80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  159 (274)
T PRK13644         80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI  159 (274)
T ss_pred             EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            333332110 000                           01111222221111              568999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||++..      .+++.|++++++ |.|||++|||++++.           .||++++|++ ++++.|+++++.
T Consensus       160 LDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~~tH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~~~~  223 (274)
T PRK13644        160 FDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEELH-----------DADRIIVMDRGKIVLEGEPENVL  223 (274)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHh-----------hCCEEEEEECCEEEEECCHHHHh
Confidence            99997644      578888888765 999999999999984           7999999999 999999998876

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=6.9e-29  Score=224.26  Aligned_cols=168  Identities=18%  Similarity=0.217  Sum_probs=119.6

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEE
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVA  110 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~  110 (280)
                      ++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..        +|.            .++
T Consensus        10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   88 (265)
T PRK10575         10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLL-KMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA   88 (265)
T ss_pred             ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence            479999999999988999999999999999999999999999999 99999832        221            234


Q ss_pred             EecCCccccc--ccceeeeec-----c-----------cccccccccCchHHHHHH--------------hhhhccCCCE
Q 023563          111 VIKSNKDTRY--GLDSIVTHD-----G-----------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       111 ~~~~~~~~~~--~~~~v~~~~-----~-----------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~l  158 (280)
                      +++|......  .+...+...     .           .....+...++..+.++.              +++|+.+|++
T Consensus        89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  168 (265)
T PRK10575         89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC  168 (265)
T ss_pred             EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            4443321100  000000000     0           000011112222222111              5689999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||++..      .++++|.+++++.|.|||++||+++++.+          +||++++|++ +++..|+++++.
T Consensus       169 llLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~----------~~d~i~~l~~G~i~~~~~~~~~~  236 (265)
T PRK10575        169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAAR----------YCDYLVALRGGEMIAQGTPAELM  236 (265)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCeEEEecCHHHhc
Confidence            9999997654      47888888876558999999999999976          9999999999 988888888775

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.96  E-value=5.6e-29  Score=218.30  Aligned_cols=163  Identities=19%  Similarity=0.185  Sum_probs=113.5

Q ss_pred             EEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccccce
Q 023563           53 VSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDS  124 (280)
Q Consensus        53 l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~  124 (280)
                      |+++|+++.|++  +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+....     ...+..+++
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~   79 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTL-KMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY   79 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence            578999999987  7899999999999999999999999999999 99999832 22222111100     001111222


Q ss_pred             eeeecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563          125 IVTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDE  163 (280)
Q Consensus       125 v~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE  163 (280)
                      +++.....                           ...+...++....++.              +++++.+|++|||||
T Consensus        80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE  159 (220)
T cd03263          80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE  159 (220)
T ss_pred             ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence            22211100                           0011112222222211              568999999999999


Q ss_pred             cccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          164 AQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       164 P~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      |++..      .+++.|+++++  +.|||++||+++++.+          +||++++|++ +++..|+++++
T Consensus       160 P~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~----------~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         160 PTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEA----------LCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHH----------hcCEEEEEECCEEEecCCHHHc
Confidence            96544      57788888864  6899999999999976          8999999999 98888877654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.96  E-value=8.1e-29  Score=210.04  Aligned_cols=160  Identities=21%  Similarity=0.204  Sum_probs=121.2

Q ss_pred             cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCC--ccccc
Q 023563           52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSN--KDTRY  120 (280)
Q Consensus        52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~--~~~~~  120 (280)
                      ||+++||+|.|+ ++.+|+||||+|++||++.|+||||||||||+ ++|.+.        .++|.+++.++..  +..|.
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTll-kLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR   79 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLL-KLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR   79 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHH-HHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence            689999999995 46699999999999999999999999999999 999885        3355555544332  22356


Q ss_pred             ccceeeeeccccccc---------------------------ccccCchHHHHH--------------HhhhhccCCCEE
Q 023563          121 GLDSIVTHDGVKLPC---------------------------CALTTLSSFRQK--------------FGSDAYDQVDVI  159 (280)
Q Consensus       121 ~~~~v~~~~~~~~~~---------------------------~~~~~l~~~~~~--------------~a~aL~~~p~lL  159 (280)
                      .++.+||...++...                           +.++++.+....              .|||++.+|++|
T Consensus        80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL  159 (223)
T COG2884          80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL  159 (223)
T ss_pred             eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence            667777643322111                           222333222221              178999999999


Q ss_pred             EEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          160 GIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       160 lLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      |.||||.      ..++++++.++... |+||+|+|||.+.+.+          +-.|++.|++ +++...
T Consensus       160 lADEPTGNLDp~~s~~im~lfeeinr~-GtTVl~ATHd~~lv~~----------~~~rvl~l~~Grl~~d~  219 (223)
T COG2884         160 LADEPTGNLDPDLSWEIMRLFEEINRL-GTTVLMATHDLELVNR----------MRHRVLALEDGRLVRDE  219 (223)
T ss_pred             eecCCCCCCChHHHHHHHHHHHHHhhc-CcEEEEEeccHHHHHh----------ccCcEEEEeCCEEEecc
Confidence            9999954      55799999999885 9999999999999997          8899999999 876554

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.96  E-value=8.5e-29  Score=219.74  Aligned_cols=166  Identities=17%  Similarity=0.152  Sum_probs=116.0

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----ccccccccee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDSI  125 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~v  125 (280)
                      +|+++|++++|+++.+|+++||+|.+|++++|+||||||||||+ ++|+|+.. ....+.+-...     ...+..+.++
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~   79 (236)
T TIGR03864         1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLF-SLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV   79 (236)
T ss_pred             CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence            58899999999988999999999999999999999999999999 99999732 22222111100     0000112222


Q ss_pred             eeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563          126 VTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA  164 (280)
Q Consensus       126 ~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP  164 (280)
                      ++......                           ..+...++....++.              |++++.+|++||||||
T Consensus        80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP  159 (236)
T TIGR03864        80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEP  159 (236)
T ss_pred             CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            22111000                           001111222111111              5789999999999999


Q ss_pred             ccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          165 QFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       165 ~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++..      .+++.|++++++.|.|+|++|||++++.           .||++++|++ +++..|+++++.
T Consensus       160 ~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-----------~~d~i~~l~~G~i~~~~~~~~~~  220 (236)
T TIGR03864       160 TVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE-----------ADDRLVVLHRGRVLADGAAAELR  220 (236)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh-----------hCCEEEEEeCCeEEEeCCHHHHH
Confidence            6654      5788888887545899999999999885           6999999999 888888887765

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.96  E-value=1.5e-28  Score=213.97  Aligned_cols=159  Identities=17%  Similarity=0.182  Sum_probs=110.8

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc----ccccccceeee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK----DTRYGLDSIVT  127 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~----~~~~~~~~v~~  127 (280)
                      |+++|++++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-....    ..+..+.++++
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   79 (208)
T cd03268           1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTM-KIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE   79 (208)
T ss_pred             CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence            4789999999888999999999999999999999999999999 99999732 122222111100    00111222222


Q ss_pred             eccc-----------------------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH--
Q 023563          128 HDGV-----------------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE--  168 (280)
Q Consensus       128 ~~~~-----------------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~--  168 (280)
                      ....                       ....+...++....++.              +++++.+|++||||||++..  
T Consensus        80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~  159 (208)
T cd03268          80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP  159 (208)
T ss_pred             CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence            1110                       00111222333222222              56899999999999997654  


Q ss_pred             ----HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          169 ----DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       169 ----~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                          .++++|++++++ |.|+|++|||++++.+          +||++++|++ +++..|
T Consensus       160 ~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~----------~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         160 DGIKELRELILSLRDQ-GITVLISSHLLSEIQK----------VADRIGIINKGKLIEEG  208 (208)
T ss_pred             HHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHH----------hcCEEEEEECCEEEecC
Confidence                578888888774 9999999999999976          8999999999 776543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=9e-29  Score=220.50  Aligned_cols=167  Identities=17%  Similarity=0.145  Sum_probs=118.6

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------cccccccce
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDTRYGLDS  124 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~~~~~~~  124 (280)
                      +|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....      ...+..+++
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~   81 (241)
T PRK14250          3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLI-KLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM   81 (241)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence            58999999999888899999999999999999999999999999 99999732 22222111100      001112222


Q ss_pred             eeeeccc----------------------ccccccccCch-HHHHHH--------------hhhhccCCCEEEEeCcccH
Q 023563          125 IVTHDGV----------------------KLPCCALTTLS-SFRQKF--------------GSDAYDQVDVIGIDEAQFF  167 (280)
Q Consensus       125 v~~~~~~----------------------~~~~~~~~~l~-~~~~~~--------------a~aL~~~p~lLlLDEP~~~  167 (280)
                      +++....                      ....+...++. .+.++.              +++++.+|++||||||++.
T Consensus        82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  161 (241)
T PRK14250         82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA  161 (241)
T ss_pred             EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            2221100                      00011112232 122221              6789999999999999755


Q ss_pred             H------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          168 E------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       168 ~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      .      .+++.|++++++.|.|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       162 LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~  220 (241)
T PRK14250        162 LDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKR----------IGDYTAFLNKGILVEYAKTYDFF  220 (241)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHH----------hCCEEEEEeCCEEEEeCCHHHHh
Confidence            4      47888888876559999999999999876          9999999999 888888888776

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.96  E-value=8.3e-29  Score=217.99  Aligned_cols=160  Identities=16%  Similarity=0.118  Sum_probs=109.5

Q ss_pred             cEEEcCceEEeCCe----eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC---------cc
Q 023563           52 MVSPRPPLFSLQNR----NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN---------KD  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~~----~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~---------~~  117 (280)
                      +|+++||+++|+++    .+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+....         ..
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLA-RAILGLLKPTSGSIIFDGKDLLKLSRRLRKI   79 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEccccchhhHHH
Confidence            57899999999765    799999999999999999999999999999 99999732 11111111100         00


Q ss_pred             cccccceeeeeccc-cc------------------------------ccccccCch-HHHHHH--------------hhh
Q 023563          118 TRYGLDSIVTHDGV-KL------------------------------PCCALTTLS-SFRQKF--------------GSD  151 (280)
Q Consensus       118 ~~~~~~~v~~~~~~-~~------------------------------~~~~~~~l~-~~~~~~--------------a~a  151 (280)
                      .+..++++++.... ..                              ..+...++. .+.++.              +++
T Consensus        80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara  159 (228)
T cd03257          80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA  159 (228)
T ss_pred             hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence            11122222222100 00                              001111221 111111              578


Q ss_pred             hccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          152 AYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      |+.+|++||||||++.      ..+++.|++++++.|.|||++|||++++.+          +||++++|++ +++..
T Consensus       160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~----------~~d~i~~l~~G~i~~~  227 (228)
T cd03257         160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK----------IADRVAVMYAGKIVEE  227 (228)
T ss_pred             HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hcCeEEEEeCCEEEec
Confidence            9999999999999754      458888888876558999999999999976          8999999998 76544

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=7e-29  Score=228.89  Aligned_cols=166  Identities=17%  Similarity=0.161  Sum_probs=120.3

Q ss_pred             cEEEcCceEEeCCe-----eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------
Q 023563           52 MVSPRPPLFSLQNR-----NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----------  115 (280)
Q Consensus        52 ~l~~~~ls~~y~~~-----~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----------  115 (280)
                      +|+++|++++|++.     .+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+....          
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl-~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~   80 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFI-EHLNALLLPDTGTIEWIFKDEKNKKKTKEK   80 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEEeceecccccccccc
Confidence            48999999999753     599999999999999999999999999999 99999843 22222221000          


Q ss_pred             --------------------cccccccceeeeecc-ccc---------------------------ccccccCch-HHHH
Q 023563          116 --------------------KDTRYGLDSIVTHDG-VKL---------------------------PCCALTTLS-SFRQ  146 (280)
Q Consensus       116 --------------------~~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l~-~~~~  146 (280)
                                          ...+..+++++|... .++                           ..+...++. .+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~  160 (305)
T PRK13651         81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ  160 (305)
T ss_pred             cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence                                011223444554311 000                           011122332 2222


Q ss_pred             HH--------------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccc
Q 023563          147 KF--------------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDII  206 (280)
Q Consensus       147 ~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll  206 (280)
                      +.              |++|+.+|++||||||++.+      .++++|++++++ |.|||++|||++++.+         
T Consensus       161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~---------  230 (305)
T PRK13651        161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLE---------  230 (305)
T ss_pred             CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeeCHHHHHH---------
Confidence            21              56899999999999997644      588899988865 9999999999999876         


Q ss_pred             cccceEEEeec-eeccccCcceee
Q 023563          207 PLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       207 ~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                       +||+|++|++ ++++.|+++++.
T Consensus       231 -~adrv~vl~~G~i~~~g~~~~~~  253 (305)
T PRK13651        231 -WTKRTIFFKDGKIIKDGDTYDIL  253 (305)
T ss_pred             -hCCEEEEEECCEEEEECCHHHHh
Confidence             9999999999 999999999887

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=7.6e-29  Score=222.61  Aligned_cols=166  Identities=19%  Similarity=0.249  Sum_probs=118.4

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCe-------------------eEEE
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGR-------------------NVAV  111 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~-------------------~i~~  111 (280)
                      ||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ...                   .+++
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (255)
T PRK11231          2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLL-KCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL   80 (255)
T ss_pred             EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence            68999999999988999999999999999999999999999999 99999732 112                   2344


Q ss_pred             ecCCcccccc--cceeeeec--------c--------cccccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563          112 IKSNKDTRYG--LDSIVTHD--------G--------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVI  159 (280)
Q Consensus       112 ~~~~~~~~~~--~~~v~~~~--------~--------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lL  159 (280)
                      ++|.......  +...+...        .        .....+...++..+.++.              ++|++.+|++|
T Consensus        81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  160 (255)
T PRK11231         81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV  160 (255)
T ss_pred             ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            4443211100  00000000        0        000011112222221111              67899999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||++..      .+++.|++++++ |+|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       161 llDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~  226 (255)
T PRK11231        161 LLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASR----------YCDHLVVLANGHVMAQGTPEEVM  226 (255)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHH----------hcCEEEEEECCeEEEEcCHHHhc
Confidence            999997554      478888888765 9999999999999876          9999999999 988888888775

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=3.1e-29  Score=226.73  Aligned_cols=176  Identities=19%  Similarity=0.201  Sum_probs=136.7

Q ss_pred             cEEEcCceEEeCCe------------------------eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch----
Q 023563           52 MVSPRPPLFSLQNR------------------------NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET----  103 (280)
Q Consensus        52 ~l~~~~ls~~y~~~------------------------~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~----  103 (280)
                      .|+++|++|-||++                        ..++|+||+|++|||+.|+|-||||||||+ ++++++.    
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLv-R~~NrLiept~   82 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLV-RLLNRLIEPTR   82 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHH-HHHhccCCCCC
Confidence            58899999988642                        358999999999999999999999999999 9999983    


Q ss_pred             ----hCCeeEEEecCCcc---cccccceeeeecccc---------------------------cccccccCchHHHHHH-
Q 023563          104 ----QKGRNVAVIKSNKD---TRYGLDSIVTHDGVK---------------------------LPCCALTTLSSFRQKF-  148 (280)
Q Consensus       104 ----~~g~~i~~~~~~~~---~~~~~~~v~~~~~~~---------------------------~~~~~~~~l~~~~~~~-  148 (280)
                          +.|+++.-+.....   .+..+..+||+.+++                           ..++..+++..+.+++ 
T Consensus        83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp  162 (386)
T COG4175          83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP  162 (386)
T ss_pred             ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence                34555443332211   123345566543322                           1123455666666655 


Q ss_pred             -------------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCcccccccc
Q 023563          149 -------------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLA  209 (280)
Q Consensus       149 -------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~a  209 (280)
                                   ||||+.+|++||||||++++      ++.+.|.++.++.++||||+|||+++|.+          +.
T Consensus       163 ~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlr----------iG  232 (386)
T COG4175         163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALR----------IG  232 (386)
T ss_pred             ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHh----------cc
Confidence                         68999999999999998765      58889999998899999999999999987          99


Q ss_pred             ceEEEeec-eeccccCcceeeeeecCCCcE
Q 023563          210 DSVTKLTA-RCEFCGKRAFFTLRKTEETKT  238 (280)
Q Consensus       210 D~i~~L~~-~i~~~g~~~~~~~~~~~~~~~  238 (280)
                      |||.+|++ +++.+|+|+|+...+.++...
T Consensus       233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~  262 (386)
T COG4175         233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR  262 (386)
T ss_pred             ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence            99999999 999999999999766655443

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=7.2e-29  Score=225.68  Aligned_cols=168  Identities=17%  Similarity=0.218  Sum_probs=119.7

Q ss_pred             ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------cccccc
Q 023563           51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~  122 (280)
                      .+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....      ..+..+
T Consensus         2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   80 (277)
T PRK13652          2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLF-RHFNGILKPTSGSVLIRGEPITKENIREVRKFV   80 (277)
T ss_pred             ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence            3799999999995 56799999999999999999999999999999 99999832 222222211100      011122


Q ss_pred             ceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          123 DSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       123 ~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      +++++... ..+                           ..+...++....++.              |++|+.+|++||
T Consensus        81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli  160 (277)
T PRK13652         81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV  160 (277)
T ss_pred             EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            33332210 000                           001111222221111              578999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||++..      .++++|++++++.|.|||++||+++++.+          +||++++|++ ++++.|+++++.
T Consensus       161 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~----------~~drv~~l~~G~i~~~g~~~~~~  226 (277)
T PRK13652        161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPE----------MADYIYVMDKGRIVAYGTVEEIF  226 (277)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEEECCeEEEECCHHHHh
Confidence            99997654      57888888877568999999999999976          9999999999 999999998886

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.96  E-value=7.6e-29  Score=216.57  Aligned_cols=158  Identities=22%  Similarity=0.243  Sum_probs=111.6

Q ss_pred             EEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC-------eeEEEecCCccc
Q 023563           54 SPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG-------RNVAVIKSNKDT  118 (280)
Q Consensus        54 ~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g-------~~i~~~~~~~~~  118 (280)
                      +++|++++|+++.+++++||+|++|++++|+||||||||||+ ++|+|+..        +|       +.+++++|+...
T Consensus         1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~   79 (213)
T cd03235           1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLL-KAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI   79 (213)
T ss_pred             CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence            368999999988899999999999999999999999999999 99999832        22       235666655321


Q ss_pred             c----cccceeee--ecc--------------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563          119 R----YGLDSIVT--HDG--------------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA  164 (280)
Q Consensus       119 ~----~~~~~v~~--~~~--------------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP  164 (280)
                      .    ..+...+.  ...              .....+...++..+.++.              +++|+.+|++||||||
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP  159 (213)
T cd03235          80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP  159 (213)
T ss_pred             ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            0    01100000  000              000111122332222221              5789999999999999


Q ss_pred             ccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceecccc
Q 023563          165 QFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCG  223 (280)
Q Consensus       165 ~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g  223 (280)
                      ++.+      .+.+.|++++++ |.|||++|||++++.+          +||++++|++++++.|
T Consensus       160 t~~LD~~~~~~l~~~l~~~~~~-~~tvi~~sH~~~~~~~----------~~d~i~~l~~~~~~~g  213 (213)
T cd03235         160 FAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLE----------YFDRVLLLNRTVVASG  213 (213)
T ss_pred             cccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH----------hcCEEEEEcCcEeecC
Confidence            7654      478888888774 9999999999999976          9999999988665544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.4e-29  Score=243.14  Aligned_cols=168  Identities=16%  Similarity=0.120  Sum_probs=119.8

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------ccccc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYG  121 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~  121 (280)
                      .++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....       ..+..
T Consensus         3 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~   81 (510)
T PRK09700          3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLM-KVLSGIHEPTKGTITINNINYNKLDHKLAAQLG   81 (510)
T ss_pred             CceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence            3589999999999988999999999999999999999999999999 99999842 222222111000       00112


Q ss_pred             cceeeeeccccc----------------------------------ccccccCchHHHHHH--------------hhhhc
Q 023563          122 LDSIVTHDGVKL----------------------------------PCCALTTLSSFRQKF--------------GSDAY  153 (280)
Q Consensus       122 ~~~v~~~~~~~~----------------------------------~~~~~~~l~~~~~~~--------------a~aL~  153 (280)
                      +++++|......                                  ..+...++.+..++.              |++|+
T Consensus        82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~  161 (510)
T PRK09700         82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM  161 (510)
T ss_pred             eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence            333333211000                                  000011111111111              67899


Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|++||||||++.+      .++++|++++++ |+|||++|||++++.+          +||++++|++ ++++.|+++
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~----------~~d~v~~l~~G~i~~~g~~~  230 (510)
T PRK09700        162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRR----------ICDRYTVMKDGSSVCSGMVS  230 (510)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEeeecchh
Confidence            999999999997654      588899999876 9999999999999986          9999999999 999999888


Q ss_pred             eee
Q 023563          227 FFT  229 (280)
Q Consensus       227 ~~~  229 (280)
                      ++.
T Consensus       231 ~~~  233 (510)
T PRK09700        231 DVS  233 (510)
T ss_pred             hCC
Confidence            764

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.96  E-value=2.7e-28  Score=219.40  Aligned_cols=169  Identities=18%  Similarity=0.098  Sum_probs=121.1

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cc------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KD------  117 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~------  117 (280)
                      .++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....     ..      
T Consensus         4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~   82 (258)
T PRK11701          4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLL-NALSARLAPDAGEVHYRMRDGQLRDLYALSEAE   82 (258)
T ss_pred             CceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence            3489999999999888899999999999999999999999999999 99999732 22233222211     00      


Q ss_pred             ----cccccceeeeeccc-cc-----------------------------ccccccCch-HHHHHH--------------
Q 023563          118 ----TRYGLDSIVTHDGV-KL-----------------------------PCCALTTLS-SFRQKF--------------  148 (280)
Q Consensus       118 ----~~~~~~~v~~~~~~-~~-----------------------------~~~~~~~l~-~~~~~~--------------  148 (280)
                          .+..++++++.... ..                             ..+...++. ...++.              
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l  162 (258)
T PRK11701         83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI  162 (258)
T ss_pred             HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence                01123334332210 00                             000111121 111111              


Q ss_pred             hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      |++|+.+|++||||||++.+      .+++.|++++++.|.|||++|||++++.+          +||++++|++ +++.
T Consensus       163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~----------~~d~i~~l~~g~i~~  232 (258)
T PRK11701        163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARL----------LAHRLLVMKQGRVVE  232 (258)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH----------hcCEEEEEECCEEEE
Confidence            67899999999999997654      47888888876558999999999999986          8999999999 9999


Q ss_pred             ccCcceee
Q 023563          222 CGKRAFFT  229 (280)
Q Consensus       222 ~g~~~~~~  229 (280)
                      .|+++++.
T Consensus       233 ~~~~~~~~  240 (258)
T PRK11701        233 SGLTDQVL  240 (258)
T ss_pred             eCCHHHHh
Confidence            99888776

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.96  E-value=1.4e-28  Score=218.87  Aligned_cols=166  Identities=20%  Similarity=0.199  Sum_probs=117.0

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~  122 (280)
                      ++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....       ..+..+
T Consensus         1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (242)
T TIGR03411         1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMM-DVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI   79 (242)
T ss_pred             CeEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence            378999999999988899999999999999999999999999999 99999732 222222211100       001122


Q ss_pred             ceeeeeccccc-----------------------------------ccccccCchHHHHHH--------------hhhhc
Q 023563          123 DSIVTHDGVKL-----------------------------------PCCALTTLSSFRQKF--------------GSDAY  153 (280)
Q Consensus       123 ~~v~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~--------------a~aL~  153 (280)
                      +++++......                                   ..+...++....++.              +++++
T Consensus        80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~  159 (242)
T TIGR03411        80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM  159 (242)
T ss_pred             eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence            33332111000                                   000111111111111              56899


Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|++||||||++..      .++++|+++.+  ++|||++||+++++.+          +||++++|++ +++..|+++
T Consensus       160 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~----------~~d~i~~l~~g~~~~~~~~~  227 (242)
T TIGR03411       160 QDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRS----------IADKVTVLHQGSVLAEGSLD  227 (242)
T ss_pred             cCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHH----------hCCEEEEEECCeEEeeCCHH
Confidence            999999999997644      57888888864  6899999999999986          9999999999 988888887


Q ss_pred             eee
Q 023563          227 FFT  229 (280)
Q Consensus       227 ~~~  229 (280)
                      ++.
T Consensus       228 ~~~  230 (242)
T TIGR03411       228 QVQ  230 (242)
T ss_pred             HHh
Confidence            765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.9e-29  Score=223.54  Aligned_cols=169  Identities=17%  Similarity=0.201  Sum_probs=120.0

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee-------------------E
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN-------------------V  109 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~-------------------i  109 (280)
                      ..+|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+ ++|+|+.. ....                   +
T Consensus         5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (265)
T PRK10253          5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLL-RTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI   83 (265)
T ss_pred             ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            3479999999999988999999999999999999999999999999 99999732 1222                   3


Q ss_pred             EEecCCccccc--ccceeee-----ecc-----------cccccccccCchHHHHHH--------------hhhhccCCC
Q 023563          110 AVIKSNKDTRY--GLDSIVT-----HDG-----------VKLPCCALTTLSSFRQKF--------------GSDAYDQVD  157 (280)
Q Consensus       110 ~~~~~~~~~~~--~~~~v~~-----~~~-----------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~  157 (280)
                      +|++|......  .+...+.     ...           .....+...++..+..+.              |+|++.+|+
T Consensus        84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~  163 (265)
T PRK10253         84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA  163 (265)
T ss_pred             EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCC
Confidence            33333321100  0000000     000           000011111222221111              678999999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +||||||++..      .++++|.++.++.|.|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       164 llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~  232 (265)
T PRK10253        164 IMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACR----------YASHLIALREGKIVAQGAPKEIV  232 (265)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHh
Confidence            99999997654      47888888876558999999999999876          9999999999 999999988775

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=2.6e-29  Score=211.71  Aligned_cols=170  Identities=16%  Similarity=0.183  Sum_probs=132.8

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCc------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNK------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~------  116 (280)
                      +.|+++|+.|+||...+|++|||+-.+|+++.|||.|||||||++ +||+-+        ..+|..+...+...      
T Consensus         5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfL-RCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a   83 (256)
T COG4598           5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFL-RCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA   83 (256)
T ss_pred             cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHH-HHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence            469999999999999999999999999999999999999999999 999876        23455554333221      


Q ss_pred             ------ccccccceeeeeccccccc----------------------------ccccCchHHHHHH--------------
Q 023563          117 ------DTRYGLDSIVTHDGVKLPC----------------------------CALTTLSSFRQKF--------------  148 (280)
Q Consensus       117 ------~~~~~~~~v~~~~~~~~~~----------------------------~~~~~l~~~~~~~--------------  148 (280)
                            ..|..++.+||+.+++...                            +...++.+..+.|              
T Consensus        84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aI  163 (256)
T COG4598          84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAI  163 (256)
T ss_pred             CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHH
Confidence                  1134456677765542211                            1112222222222              


Q ss_pred             hhhhccCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          149 GSDAYDQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      ||||+.+|+++|+||||+++|      ++..+++++++ |+|+++|||.+.++++          ++.+|++|.. .+..
T Consensus       164 ARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~----------Vss~v~fLh~G~iEE  232 (256)
T COG4598         164 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARD----------VSSHVIFLHQGKIEE  232 (256)
T ss_pred             HHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHh----------hhhheEEeecceecc
Confidence            679999999999999998864      88899999998 9999999999999997          9999999999 9999


Q ss_pred             ccCcceeeeee
Q 023563          222 CGKRAFFTLRK  232 (280)
Q Consensus       222 ~g~~~~~~~~~  232 (280)
                      .|+|++++..+
T Consensus       233 ~G~P~qvf~nP  243 (256)
T COG4598         233 EGPPEQVFGNP  243 (256)
T ss_pred             cCChHHHhcCC
Confidence            99999999443

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.9e-28  Score=218.23  Aligned_cols=166  Identities=17%  Similarity=0.219  Sum_probs=118.3

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------------ccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------------KDT  118 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------------~~~  118 (280)
                      +|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...            ...
T Consensus         2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (242)
T PRK11124          2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLL-RVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL   80 (242)
T ss_pred             EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence            68999999999988999999999999999999999999999999 99999842 22223221110            001


Q ss_pred             ccccceeeeecccccc----------------------------cccccCchHHHHHH--------------hhhhccCC
Q 023563          119 RYGLDSIVTHDGVKLP----------------------------CCALTTLSSFRQKF--------------GSDAYDQV  156 (280)
Q Consensus       119 ~~~~~~v~~~~~~~~~----------------------------~~~~~~l~~~~~~~--------------a~aL~~~p  156 (280)
                      +..++++++.......                            .+...++..+.++.              +++++.+|
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p  160 (242)
T PRK11124         81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP  160 (242)
T ss_pred             HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            1223333332111000                            01111222221111              56899999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++||||||++..      .+++.|+++.++ |+|+|++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       161 ~llilDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~----------~~d~i~~l~~g~i~~~~~~~~~~  229 (242)
T PRK11124        161 QVLLFDEPTAALDPEITAQIVSIIRELAET-GITQVIVTHEVEVARK----------TASRVVYMENGHIVEQGDASCFT  229 (242)
T ss_pred             CEEEEcCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hcCEEEEEECCEEEEeCCHHHhc
Confidence            999999997644      478888888764 9999999999999876          8999999999 888888877654

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=9.9e-29  Score=225.09  Aligned_cols=168  Identities=15%  Similarity=0.135  Sum_probs=119.4

Q ss_pred             CccEEEcCceEEeCC------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------
Q 023563           50 HSMVSPRPPLFSLQN------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------  115 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------  115 (280)
                      ++||+++|++++|++      +.+|+|+||+|++||+++|+||||||||||+ ++|.|+.. ....+.+-...       
T Consensus         2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~i~g~~i~~~~~~   80 (280)
T PRK13633          2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIA-KHMNALLIPSEGKVYVDGLDTSDEENL   80 (280)
T ss_pred             CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEeccccccH
Confidence            458999999999963      5699999999999999999999999999999 99999833 22222211100       


Q ss_pred             cccccccceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhc
Q 023563          116 KDTRYGLDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAY  153 (280)
Q Consensus       116 ~~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~  153 (280)
                      ...+..++++++... ...                           ..+...++..+.++.              |++|+
T Consensus        81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~  160 (280)
T PRK13633         81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILA  160 (280)
T ss_pred             HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence            011222333333211 000                           001111222222211              56899


Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|++||||||++.+      .+++.|++++++.|.|||++|||++++.           .||++++|++ +++..|+++
T Consensus       161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~  229 (280)
T PRK13633        161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAV-----------EADRIIVMDSGKVVMEGTPK  229 (280)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHh-----------cCCEEEEEECCEEEEecCHH
Confidence            999999999997654      5888899887655999999999999885           5999999999 999999998


Q ss_pred             eee
Q 023563          227 FFT  229 (280)
Q Consensus       227 ~~~  229 (280)
                      ++.
T Consensus       230 ~~~  232 (280)
T PRK13633        230 EIF  232 (280)
T ss_pred             HHh
Confidence            886

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=3.3e-28  Score=216.35  Aligned_cols=166  Identities=15%  Similarity=0.162  Sum_probs=118.1

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------cccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTRYGL  122 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~~~~  122 (280)
                      ||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....        ..+..+
T Consensus         1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   79 (240)
T PRK09493          1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLL-RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA   79 (240)
T ss_pred             CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence            58899999999988899999999999999999999999999999 99999832 222222111000        001123


Q ss_pred             ceeeeeccccc----------------------------ccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          123 DSIVTHDGVKL----------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       123 ~~v~~~~~~~~----------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      +++++......                            ..+...++....++.              |++++.+|++||
T Consensus        80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll  159 (240)
T PRK09493         80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML  159 (240)
T ss_pred             EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence            33333211100                            001111222211111              568999999999


Q ss_pred             EeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          161 IDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       161 LDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||++.      ..++++|++++++ |+|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       160 lDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~  224 (240)
T PRK09493        160 FDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEK----------VASRLIFIDKGRIAEDGDPQVLI  224 (240)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEeeCCHHHHh
Confidence            9999654      4578888888765 9999999999999976          8999999999 998888887765

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.9e-29  Score=226.20  Aligned_cols=166  Identities=15%  Similarity=0.126  Sum_probs=118.1

Q ss_pred             cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------
Q 023563           52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----------  115 (280)
Q Consensus        52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----------  115 (280)
                      +|+++|++++|++     +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...          
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~   80 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLM-QHFNALLKPSSGTITIAGYHITPETGNKNL   80 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEECccccccchH
Confidence            5899999999974     4699999999999999999999999999999 99999832 11222111100          


Q ss_pred             cccccccceeeeecc-cc---------------------------cccccccCch-HHHHHH--------------hhhh
Q 023563          116 KDTRYGLDSIVTHDG-VK---------------------------LPCCALTTLS-SFRQKF--------------GSDA  152 (280)
Q Consensus       116 ~~~~~~~~~v~~~~~-~~---------------------------~~~~~~~~l~-~~~~~~--------------a~aL  152 (280)
                      ...+..++++++... ..                           ...+...++. .+.++.              |++|
T Consensus        81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral  160 (287)
T PRK13641         81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM  160 (287)
T ss_pred             HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence            001122333333210 00                           0001112332 222221              5789


Q ss_pred             ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563          153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR  225 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~  225 (280)
                      +.+|++||||||++..      .+.++|++++++ |.|||++|||++++.+          +||++++|++ +++..|++
T Consensus       161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tvlivsH~~~~~~~----------~~d~v~~l~~G~i~~~g~~  229 (287)
T PRK13641        161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAE----------YADDVLVLEHGKLIKHASP  229 (287)
T ss_pred             HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCH
Confidence            9999999999997654      578888888765 9999999999999986          9999999999 99999998


Q ss_pred             ceee
Q 023563          226 AFFT  229 (280)
Q Consensus       226 ~~~~  229 (280)
                      +++.
T Consensus       230 ~~~~  233 (287)
T PRK13641        230 KEIF  233 (287)
T ss_pred             HHHh
Confidence            8876

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3e-28  Score=219.21  Aligned_cols=163  Identities=17%  Similarity=0.137  Sum_probs=112.3

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee--------------EEEecCCc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN--------------VAVIKSNK  116 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~--------------i~~~~~~~  116 (280)
                      ||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....              +++++|..
T Consensus         1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~   79 (255)
T PRK11248          1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLL-NLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE   79 (255)
T ss_pred             CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence            58999999999888899999999999999999999999999999 99999832 2222              33444332


Q ss_pred             cccc--ccceeee---e-cc--------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH
Q 023563          117 DTRY--GLDSIVT---H-DG--------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE  168 (280)
Q Consensus       117 ~~~~--~~~~v~~---~-~~--------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~  168 (280)
                      ....  .+...+.   . ..        .....+...++....++.              +++|+.+|++||||||++.+
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~L  159 (255)
T PRK11248         80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL  159 (255)
T ss_pred             ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence            1100  0000000   0 00        000011112222222111              56899999999999997654


Q ss_pred             ------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee--c-eeccccCc
Q 023563          169 ------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT--A-RCEFCGKR  225 (280)
Q Consensus       169 ------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~--~-~i~~~g~~  225 (280)
                            .++++|++++++.|.|||++|||++++.+          +||++++|+  + +++..++.
T Consensus       160 D~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~----------~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        160 DAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVF----------MATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEeCCCcEEEEEecC
Confidence                  57888888865458999999999999986          999999997  4 66665554

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.6e-29  Score=235.62  Aligned_cols=167  Identities=17%  Similarity=0.136  Sum_probs=114.4

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------c----cccc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------D----TRYG  121 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~----~~~~  121 (280)
                      ++.+++.+.|+...+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..+.      .    .+..
T Consensus        29 ~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLL-r~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~  107 (400)
T PRK10070         29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMV-RLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK  107 (400)
T ss_pred             ccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHH-HHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCC
Confidence            3444444444444589999999999999999999999999999 99999842 222222111100      0    0123


Q ss_pred             cceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          122 LDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       122 ~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      +++++|+.....                           ..+...++..+.++.              |+||+.+|++||
T Consensus       108 igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLL  187 (400)
T PRK10070        108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILL  187 (400)
T ss_pred             EEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            344444321110                           011112222222221              678999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      ||||++.+      .++++|.++.++.|+|||++|||++++.+          +||+|++|++ +++..|+++++..
T Consensus       188 LDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~----------~~Dri~vL~~G~i~~~g~~~~l~~  254 (400)
T PRK10070        188 MDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMR----------IGDRIAIMQNGEVVQVGTPDEILN  254 (400)
T ss_pred             EECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHH----------hCCEEEEEECCEEEecCCHHHHHh
Confidence            99997654      58888888876569999999999999976          9999999999 9999999888763

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.96  E-value=1.3e-28  Score=222.48  Aligned_cols=167  Identities=14%  Similarity=0.093  Sum_probs=117.8

Q ss_pred             cEEEcCceEEeC---------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----
Q 023563           52 MVSPRPPLFSLQ---------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----  116 (280)
Q Consensus        52 ~l~~~~ls~~y~---------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----  116 (280)
                      ||+++||++.|+         ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....     
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~   80 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLA-RLLLGLEKPAQGTVSFRGQDLYQLDR   80 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEccccCH
Confidence            689999999995         36799999999999999999999999999999 99999832 111121111000     


Q ss_pred             ----ccccccceeeeecc-cc-----------------------------cccccccCch-HHHHHH-------------
Q 023563          117 ----DTRYGLDSIVTHDG-VK-----------------------------LPCCALTTLS-SFRQKF-------------  148 (280)
Q Consensus       117 ----~~~~~~~~v~~~~~-~~-----------------------------~~~~~~~~l~-~~~~~~-------------  148 (280)
                          ..+..++++++... ..                             ...+...++. .+.++.             
T Consensus        81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~  160 (265)
T TIGR02769        81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN  160 (265)
T ss_pred             HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence                00112222222210 00                             0011112221 111111             


Q ss_pred             -hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563          149 -GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       149 -a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                       |++|+.+|++||||||++.+      .+++.|++++++.|+|||++|||++++.+          +||++++|++ +++
T Consensus       161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~  230 (265)
T TIGR02769       161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQS----------FCQRVAVMDKGQIV  230 (265)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH----------HhcEEEEEeCCEEE
Confidence             67899999999999997654      47888888876558999999999999986          9999999999 999


Q ss_pred             cccCcceee
Q 023563          221 FCGKRAFFT  229 (280)
Q Consensus       221 ~~g~~~~~~  229 (280)
                      ..|+++++.
T Consensus       231 ~~g~~~~~~  239 (265)
T TIGR02769       231 EECDVAQLL  239 (265)
T ss_pred             EECCHHHHc
Confidence            999988876

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.96  E-value=2.7e-28  Score=212.63  Aligned_cols=158  Identities=23%  Similarity=0.197  Sum_probs=109.8

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCe---------------eEEEecCCc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGR---------------NVAVIKSNK  116 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~---------------~i~~~~~~~  116 (280)
                      |+++|+++.|+++.+++++||+|.+|++++|+||||||||||+ ++|+|+.. ...               .+++++|..
T Consensus         1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~   79 (210)
T cd03269           1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTI-RMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER   79 (210)
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence            4789999999988999999999999999999999999999999 99999732 222               234444432


Q ss_pred             cccc--ccceeee---e-cc--------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH
Q 023563          117 DTRY--GLDSIVT---H-DG--------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE  168 (280)
Q Consensus       117 ~~~~--~~~~v~~---~-~~--------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~  168 (280)
                      ....  .+...+.   . ..        .....+...++....++.              +++++.+|++||||||++..
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L  159 (210)
T cd03269          80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL  159 (210)
T ss_pred             cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence            1110  0000000   0 00        000011112222222111              56899999999999997654


Q ss_pred             ------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          169 ------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       169 ------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                            .+++.|++++++ |.|||++|||++++.+          +||++++|++ +++..
T Consensus       160 D~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~----------~~d~i~~l~~g~i~~~  209 (210)
T cd03269         160 DPVNVELLKDVIRELARA-GKTVILSTHQMELVEE----------LCDRVLLLNKGRAVLY  209 (210)
T ss_pred             CHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHH----------hhhEEEEEeCCEEEec
Confidence                  478888888765 8999999999999876          8999999998 76543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1e-28  Score=225.02  Aligned_cols=167  Identities=19%  Similarity=0.192  Sum_probs=118.9

Q ss_pred             ccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------cccc
Q 023563           51 SMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRY  120 (280)
Q Consensus        51 ~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~  120 (280)
                      ++|+++|++++|++   +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....      ..+.
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTV-RLIDGLLEAESGQIIIDGDLLTEENVWDIRH   81 (279)
T ss_pred             ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEECCcCcHHHHHh
Confidence            37999999999963   4699999999999999999999999999999 99999832 222221111000      0112


Q ss_pred             ccceeeeecc-cc---------------------------cccccccCchHHHHHH--------------hhhhccCCCE
Q 023563          121 GLDSIVTHDG-VK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       121 ~~~~v~~~~~-~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~l  158 (280)
                      .+++++|... ..                           ...+...++..+.++.              |++|+.+|++
T Consensus        82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l  161 (279)
T PRK13650         82 KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI  161 (279)
T ss_pred             hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            2333333211 00                           0011112232222211              6789999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||++.+      .+++.|++++++.|+|||++|||++++.           +||++++|++ +++..|+++++.
T Consensus       162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-----------~~dri~~l~~G~i~~~g~~~~~~  228 (279)
T PRK13650        162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-----------LSDRVLVMKNGQVESTSTPRELF  228 (279)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence            9999997654      5888899988756999999999999884           7999999999 999999998876

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.96  E-value=1.3e-28  Score=215.00  Aligned_cols=154  Identities=19%  Similarity=0.165  Sum_probs=106.8

Q ss_pred             cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------cccc
Q 023563           52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTRY  120 (280)
Q Consensus        52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~~  120 (280)
                      ||+++|++++| +++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-....         ..+.
T Consensus         1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (214)
T TIGR02673         1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLL-KLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR   79 (214)
T ss_pred             CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence            58999999999 567899999999999999999999999999999 99999832 222222111000         0011


Q ss_pred             ccceeeeecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563          121 GLDSIVTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVI  159 (280)
Q Consensus       121 ~~~~v~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lL  159 (280)
                      .++++++.....                           ...+...++....++.              +++|+.+|++|
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll  159 (214)
T TIGR02673        80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL  159 (214)
T ss_pred             heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence            222333221100                           0001111222211111              57899999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      |||||++..      .+++.|++++++ |+|||++||+++++.+          +||++++|++
T Consensus       160 lLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~----------~~d~i~~l~~  212 (214)
T TIGR02673       160 LADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLSLVDR----------VAHRVIILDD  212 (214)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hcCEEEEecC
Confidence            999997654      578888888765 9999999999999986          8999999976

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.96  E-value=1.9e-28  Score=221.71  Aligned_cols=169  Identities=14%  Similarity=0.101  Sum_probs=118.4

Q ss_pred             CccEEEcCceEEeCC---------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----
Q 023563           50 HSMVSPRPPLFSLQN---------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----  115 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~---------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----  115 (280)
                      ++||+++||+++|++         +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....    
T Consensus         2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~   80 (267)
T PRK15112          2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLA-KMLAGMIEPTSGELLIDDHPLHFG   80 (267)
T ss_pred             cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHH-HHHhCCCCCCCCEEEECCEECCCC
Confidence            468999999999962         4699999999999999999999999999999 99999842 11222111100    


Q ss_pred             -c-ccccccceeeeeccc------------------------------ccccccccCc-hHHHHHH--------------
Q 023563          116 -K-DTRYGLDSIVTHDGV------------------------------KLPCCALTTL-SSFRQKF--------------  148 (280)
Q Consensus       116 -~-~~~~~~~~v~~~~~~------------------------------~~~~~~~~~l-~~~~~~~--------------  148 (280)
                       . ..+..+++++++...                              ....+...++ ....++.              
T Consensus        81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l  160 (267)
T PRK15112         81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGL  160 (267)
T ss_pred             chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHH
Confidence             0 001112222221100                              0001112222 1111111              


Q ss_pred             hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      +++++.+|++||||||++..      .+.+.|.+++++.|.|||++||+++++.+          +||++++|++ +++.
T Consensus       161 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~----------~~d~i~~l~~G~i~~  230 (267)
T PRK15112        161 ARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKH----------ISDQVLVMHQGEVVE  230 (267)
T ss_pred             HHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHH----------hcCEEEEEECCEEEe
Confidence            57899999999999997654      57888888876558999999999999986          8999999999 9988


Q ss_pred             ccCcceee
Q 023563          222 CGKRAFFT  229 (280)
Q Consensus       222 ~g~~~~~~  229 (280)
                      .|+++++.
T Consensus       231 ~~~~~~~~  238 (267)
T PRK15112        231 RGSTADVL  238 (267)
T ss_pred             cCCHHHHh
Confidence            88888776

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.96  E-value=2e-28  Score=215.88  Aligned_cols=163  Identities=17%  Similarity=0.174  Sum_probs=114.8

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-----h-CCeeEEEecCCc--------cc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-----Q-KGRNVAVIKSNK--------DT  118 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-----~-~g~~i~~~~~~~--------~~  118 (280)
                      |+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.     . ....+.+.....        ..
T Consensus         1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (227)
T cd03260           1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLL-RLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL   79 (227)
T ss_pred             CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence            4789999999988999999999999999999999999999999 9999976     3 222222211100        00


Q ss_pred             ccccceeeeecccc---------------------------cccccccCchHHHHH----------------HhhhhccC
Q 023563          119 RYGLDSIVTHDGVK---------------------------LPCCALTTLSSFRQK----------------FGSDAYDQ  155 (280)
Q Consensus       119 ~~~~~~v~~~~~~~---------------------------~~~~~~~~l~~~~~~----------------~a~aL~~~  155 (280)
                      +..+++++|.....                           ...+...++.....+                .+++|+.+
T Consensus        80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~  159 (227)
T cd03260          80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE  159 (227)
T ss_pred             HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence            11222222211000                           001111223222111                16789999


Q ss_pred             CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      |++||||||++..      .+++.|++++++  .|||++|||++++.+          +||++++|++ ++++.|+++++
T Consensus       160 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~  227 (227)
T cd03260         160 PEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAAR----------VADRTAFLLNGRLVEFGPTEQI  227 (227)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHH----------hCCEEEEEeCCEEEEecCcccC
Confidence            9999999997654      578888888763  899999999999876          9999999999 98888887653

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.9e-28  Score=218.30  Aligned_cols=167  Identities=13%  Similarity=0.100  Sum_probs=118.3

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------  116 (280)
                      .|+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+ ++|+|+..      ....+.+-....       
T Consensus         4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (253)
T PRK14242          4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFL-RCLNRMNDLIPGARVEGEILLDGENIYDPHVDV   82 (253)
T ss_pred             CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHH-HHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence            4589999999999988899999999999999999999999999999 99998731      223332211110       


Q ss_pred             -ccccccceeeeeccccc---------------------------ccccccCchH----HHHH--------------Hhh
Q 023563          117 -DTRYGLDSIVTHDGVKL---------------------------PCCALTTLSS----FRQK--------------FGS  150 (280)
Q Consensus       117 -~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~~----~~~~--------------~a~  150 (280)
                       ..+..+++++|......                           ..+...++..    ..++              .|+
T Consensus        83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar  162 (253)
T PRK14242         83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR  162 (253)
T ss_pred             HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence             01122333333211000                           0001112211    1111              167


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +|+.+|++||||||++..      .+.++|+++. + ++|||++|||++++.+          +||++++|++ +++..|
T Consensus       163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~----------~~d~v~~l~~G~i~~~g  230 (253)
T PRK14242        163 ALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAAR----------VSDVTAFFYMGKLIEVG  230 (253)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHH----------hCCEEEEEECCEEEEeC
Confidence            899999999999997654      5788888884 3 7899999999999976          9999999999 888888


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       231 ~~~~~~  236 (253)
T PRK14242        231 PTEQIF  236 (253)
T ss_pred             CHHHHH
Confidence            888775

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.95  E-value=1.4e-28  Score=221.54  Aligned_cols=167  Identities=23%  Similarity=0.221  Sum_probs=117.0

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------ccccccce
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGLDS  124 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~~~  124 (280)
                      ||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....      ..+..+++
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (258)
T PRK13548          2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLL-RALSGELSPDSGEVRLNGRPLADWSPAELARRRAV   80 (258)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence            68999999999988999999999999999999999999999999 99999732 122221111000      00111222


Q ss_pred             eeeecccc---------------------------cccccccCchHHHHHH--------------hhhhc------cCCC
Q 023563          125 IVTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAY------DQVD  157 (280)
Q Consensus       125 v~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~------~~p~  157 (280)
                      +++.....                           ...+...++..+.++.              +++|+      .+|+
T Consensus        81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~  160 (258)
T PRK13548         81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR  160 (258)
T ss_pred             EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence            22211100                           0011112222221111              56788      5999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +||||||++.+      .+.++|++++++.|.|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~  229 (258)
T PRK13548        161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAAR----------YADRIVLLHQGRLVADGTPAEVL  229 (258)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH----------hcCEEEEEECCEEEeeCCHHHHh
Confidence            99999997654      47888888873349999999999999976          9999999999 888888888776

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.95  E-value=1.1e-28  Score=227.00  Aligned_cols=159  Identities=18%  Similarity=0.187  Sum_probs=113.2

Q ss_pred             EEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----ccccccceeeeeccccc
Q 023563           60 FSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGLDSIVTHDGVKL  133 (280)
Q Consensus        60 ~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~~~v~~~~~~~~  133 (280)
                      |+|+++.+|+|+||+|++||++||+||||||||||+ ++|+|+.. ....+.+.....     ..+..+++++|......
T Consensus         1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~   79 (302)
T TIGR01188         1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTI-RMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE   79 (302)
T ss_pred             CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence            478888999999999999999999999999999999 99999842 222222211110     11122333333211100


Q ss_pred             ---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH----
Q 023563          134 ---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE----  168 (280)
Q Consensus       134 ---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~----  168 (280)
                                                 ..+...++....++.              |+||+.+|++||||||++.+    
T Consensus        80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~  159 (302)
T TIGR01188        80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT  159 (302)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence                                       011112222222111              57899999999999997654    


Q ss_pred             --HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          169 --DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       169 --~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                        .++++|++++++ |+|||++||+++++.+          +||+|++|++ +++..|+++++..
T Consensus       160 ~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~----------~~d~v~~l~~G~i~~~g~~~~l~~  213 (302)
T TIGR01188       160 RRAIWDYIRALKEE-GVTILLTTHYMEEADK----------LCDRIAIIDHGRIIAEGTPEELKR  213 (302)
T ss_pred             HHHHHHHHHHHHhC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEECCHHHHHH
Confidence              588899998875 9999999999999987          9999999999 9999999988753

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.7e-28  Score=220.63  Aligned_cols=168  Identities=11%  Similarity=0.081  Sum_probs=119.4

Q ss_pred             CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc------
Q 023563           49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------  116 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------  116 (280)
                      ..++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+.....      
T Consensus        18 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~   96 (268)
T PRK14248         18 KEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFL-RSINRMNDLIPSARSEGEILYEGLNILDSNIN   96 (268)
T ss_pred             CCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHH-HHHHhcccccCCCCCceEEEECCEEccccccc
Confidence            45689999999999988999999999999999999999999999999 99999631      223332211110      


Q ss_pred             --ccccccceeeeeccccc---------------------------ccccccCc----hHHHHHH--------------h
Q 023563          117 --DTRYGLDSIVTHDGVKL---------------------------PCCALTTL----SSFRQKF--------------G  149 (280)
Q Consensus       117 --~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l----~~~~~~~--------------a  149 (280)
                        ..+..+++++++.....                           ..+...++    ....++.              +
T Consensus        97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~la  176 (268)
T PRK14248         97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA  176 (268)
T ss_pred             HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHH
Confidence              01222334433211100                           00000111    0111111              6


Q ss_pred             hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      ++|+.+|++||||||++..      .++++|+++++  +.|||++|||++++.+          +||++++|++ +++..
T Consensus       177 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~----------~~d~v~~l~~G~i~~~  244 (268)
T PRK14248        177 RTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQALR----------VSDRTAFFLNGDLVEY  244 (268)
T ss_pred             HHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHH----------hCCEEEEEECCEEEEe
Confidence            7899999999999997654      47888888854  6899999999999876          9999999999 99999


Q ss_pred             cCcceee
Q 023563          223 GKRAFFT  229 (280)
Q Consensus       223 g~~~~~~  229 (280)
                      |+++++.
T Consensus       245 ~~~~~~~  251 (268)
T PRK14248        245 DQTEQIF  251 (268)
T ss_pred             CCHHHHH
Confidence            9888776

>PRK10908 cell division protein FtsE; Provisional

Probab=99.95  E-value=2.6e-28  Score=214.61  Aligned_cols=157  Identities=17%  Similarity=0.131  Sum_probs=109.3

Q ss_pred             cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------cccc
Q 023563           52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTRY  120 (280)
Q Consensus        52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~~  120 (280)
                      ||+++|++++| +++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....         ..+.
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   79 (222)
T PRK10908          1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLL-KLICGIERPSAGKIWFSGHDITRLKNREVPFLRR   79 (222)
T ss_pred             CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence            58999999999 677899999999999999999999999999999 99999842 222222111100         0112


Q ss_pred             ccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563          121 GLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVI  159 (280)
Q Consensus       121 ~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lL  159 (280)
                      .+.++++......                           ..+...++....++.              +++++.+|++|
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  159 (222)
T PRK10908         80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL  159 (222)
T ss_pred             heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence            2333333211100                           001111222111111              56899999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                      |||||++..      .++++|.+++++ |.|+|++|||++++.+          +||++++|++ +++
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~  216 (222)
T PRK10908        160 LADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIGLISR----------RSYRMLTLSDGHLH  216 (222)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEc
Confidence            999997654      477888888765 8999999999999986          8999999998 653

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.95  E-value=9e-29  Score=242.68  Aligned_cols=168  Identities=15%  Similarity=0.144  Sum_probs=120.8

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------c-cccc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------D-TRYG  121 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~-~~~~  121 (280)
                      .++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-....      . .+..
T Consensus         9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   87 (510)
T PRK15439          9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLM-KIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG   87 (510)
T ss_pred             CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence            4589999999999988899999999999999999999999999999 99999842 222222211000      0 0112


Q ss_pred             cceeeeeccccc-----------------------ccccccCchHHHHH--------------HhhhhccCCCEEEEeCc
Q 023563          122 LDSIVTHDGVKL-----------------------PCCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEA  164 (280)
Q Consensus       122 ~~~v~~~~~~~~-----------------------~~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP  164 (280)
                      +++++|......                       ..+...++....++              .|++|+.+|++||||||
T Consensus        88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEP  167 (510)
T PRK15439         88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEP  167 (510)
T ss_pred             EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            333333211100                       00111122111111              16789999999999999


Q ss_pred             ccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          165 QFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       165 ~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++.+      .++++|++++++ |+|||++|||++++.+          +||+|++|++ +++..|+++++.
T Consensus       168 t~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~  228 (510)
T PRK15439        168 TASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQ----------LADRISVMRDGTIALSGKTADLS  228 (510)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEecChHHcC
Confidence            7654      588889988775 9999999999999986          9999999999 998899988765

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.3e-28  Score=224.38  Aligned_cols=168  Identities=18%  Similarity=0.139  Sum_probs=118.9

Q ss_pred             CccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------cccc
Q 023563           50 HSMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRY  120 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~  120 (280)
                      .++|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....      ..+.
T Consensus         3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl-~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~   81 (279)
T PRK13635          3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLA-KLLNGLLLPEAGTITVGGMVLSEETVWDVRR   81 (279)
T ss_pred             CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEECCcCcHHHHhh
Confidence            357999999999974  5699999999999999999999999999999 99999732 112221111000      0111


Q ss_pred             ccceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCE
Q 023563          121 GLDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       121 ~~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~l  158 (280)
                      .++++++... ...                           ..+...++..+.++.              +++|+.+|++
T Consensus        82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l  161 (279)
T PRK13635         82 QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDI  161 (279)
T ss_pred             heEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            2233333210 000                           001111222222211              5789999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||++.+      .++++|++++++.|+|||++|||++++.           .||++++|++ ++++.|+++++.
T Consensus       162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~~~  228 (279)
T PRK13635        162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-----------QADRVIVMNKGEILEEGTPEEIF  228 (279)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-----------cCCEEEEEECCEEEEECCHHHHh
Confidence            9999997654      5888999988766999999999999885           6999999999 999999988776

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.95  E-value=3.3e-28  Score=213.11  Aligned_cols=153  Identities=18%  Similarity=0.194  Sum_probs=106.2

Q ss_pred             EEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc----------
Q 023563           53 VSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD----------  117 (280)
Q Consensus        53 l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~----------  117 (280)
                      |+++|++++|++    +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.....          
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   79 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRPTSGEVRVDGTDISKLSEKELAAF   79 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHH-HHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence            478999999976    7899999999999999999999999999999 99999842 2222322111000          


Q ss_pred             cccccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCC
Q 023563          118 TRYGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQV  156 (280)
Q Consensus       118 ~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p  156 (280)
                      .+..++++++......                           ..+...++....++.              +++|+.+|
T Consensus        80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  159 (218)
T cd03255          80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP  159 (218)
T ss_pred             HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence            0112333333211100                           011111222222111              57899999


Q ss_pred             CEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          157 DVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       157 ~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ++||||||++.      ..+.++|++++++.|+|||++|||++++.           +||++++|++
T Consensus       160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-----------~~d~v~~l~~  215 (218)
T cd03255         160 KIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-----------YADRIIELRD  215 (218)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-----------hhcEEEEeeC
Confidence            99999999754      45888899887745899999999999874           8999999987

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.95  E-value=2.8e-28  Score=231.26  Aligned_cols=163  Identities=20%  Similarity=0.261  Sum_probs=132.4

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCcccccc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNKDTRYG  121 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~~~~~~  121 (280)
                      .+.+++++++|+|++..+++||||+|++|||++|+|.||||||||+ ++|.|+        .++|+.+.+-.|....+.+
T Consensus         2 ~~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm-~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G   80 (501)
T COG3845           2 EPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLM-KILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG   80 (501)
T ss_pred             CceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHH-HHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence            3579999999999999999999999999999999999999999999 999997        3477777776666667888


Q ss_pred             cceeeeecccccccccccC---------------------chHHHHHH-----------------------hhhhccCCC
Q 023563          122 LDSIVTHDGVKLPCCALTT---------------------LSSFRQKF-----------------------GSDAYDQVD  157 (280)
Q Consensus       122 ~~~v~~~~~~~~~~~~~~~---------------------l~~~~~~~-----------------------a~aL~~~p~  157 (280)
                      ++.+.||..+.......+|                     +..+.+++                       -++|+.+|+
T Consensus        81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~  160 (501)
T COG3845          81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGAR  160 (501)
T ss_pred             CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCC
Confidence            9999998665433222111                     12222222                       137999999


Q ss_pred             EEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          158 VIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       158 lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      +|||||||+.      +++++.+++++++ |+|||++||-++++.+          +|||+.+|.. +++..-+
T Consensus       161 iLILDEPTaVLTP~E~~~lf~~l~~l~~~-G~tIi~ITHKL~Ev~~----------iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         161 LLILDEPTAVLTPQEADELFEILRRLAAE-GKTIIFITHKLKEVMA----------IADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHH----------hhCeeEEEeCCeEEeeec
Confidence            9999999764      3689999999987 9999999999999987          9999999999 8766544

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.95  E-value=2e-28  Score=218.19  Aligned_cols=166  Identities=17%  Similarity=0.175  Sum_probs=116.2

Q ss_pred             EEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEEE
Q 023563           53 VSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVAV  111 (280)
Q Consensus        53 l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~~  111 (280)
                      |+++|++++|++ +.+|+++||+|++|++++|+||||||||||+ ++|+|+..        +|.            .+++
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTM-KMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY   79 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence            468999999988 7899999999999999999999999999999 99999732        222            1233


Q ss_pred             ecCCccccc--ccceeee---e-cc--------cccccccccCchH--HHHHH--------------hhhhccCCCEEEE
Q 023563          112 IKSNKDTRY--GLDSIVT---H-DG--------VKLPCCALTTLSS--FRQKF--------------GSDAYDQVDVIGI  161 (280)
Q Consensus       112 ~~~~~~~~~--~~~~v~~---~-~~--------~~~~~~~~~~l~~--~~~~~--------------a~aL~~~p~lLlL  161 (280)
                      ++|......  .+...+.   . ..        .....+...++..  +.++.              |++++.+|++|||
T Consensus        80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  159 (242)
T cd03295          80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM  159 (242)
T ss_pred             EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            333221100  0000000   0 00        0001111223331  22221              6789999999999


Q ss_pred             eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||++..      .+++.|++++++.|+|||++||+++++.+          +||++++|++ +++..|+++++.
T Consensus       160 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~  224 (242)
T cd03295         160 DEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFR----------LADRIAIMKNGEIVQVGTPDEIL  224 (242)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEecCHHHHH
Confidence            9997654      47888888876558999999999998876          9999999999 988888877764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.95  E-value=3.4e-28  Score=216.25  Aligned_cols=165  Identities=16%  Similarity=0.143  Sum_probs=114.7

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEecCCc-------cccccc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVIKSNK-------DTRYGL  122 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~~~~~-------~~~~~~  122 (280)
                      |+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.   .....+.+.....       ..+..+
T Consensus         1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   79 (243)
T TIGR01978         1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLS-KTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL   79 (243)
T ss_pred             CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence            4789999999988999999999999999999999999999999 9999973   2222232211100       001112


Q ss_pred             ceeeeecccc----------------------------------cccccccCch-HHH-------------HH--Hhhhh
Q 023563          123 DSIVTHDGVK----------------------------------LPCCALTTLS-SFR-------------QK--FGSDA  152 (280)
Q Consensus       123 ~~v~~~~~~~----------------------------------~~~~~~~~l~-~~~-------------~~--~a~aL  152 (280)
                      .+++|.....                                  ...+...++. .+.             .+  .+++|
T Consensus        80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al  159 (243)
T TIGR01978        80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA  159 (243)
T ss_pred             EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence            2222211100                                  0000011111 110             11  16789


Q ss_pred             ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc-cceEEEeec-eeccccC
Q 023563          153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL-ADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~-aD~i~~L~~-~i~~~g~  224 (280)
                      +.+|++||||||++..      .++++|++++++ |.|||++|||++++.+          + ||++++|++ +++..|+
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~vsH~~~~~~~----------~~~d~i~~l~~G~i~~~g~  228 (243)
T TIGR01978       160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREP-DRSFLIITHYQRLLNY----------IKPDYVHVLLDGRIVKSGD  228 (243)
T ss_pred             hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CcEEEEEEecHHHHHh----------hcCCeEEEEeCCEEEEecC
Confidence            9999999999997654      588888888764 8999999999999976          7 899999999 8888888


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      ++++.
T Consensus       229 ~~~~~  233 (243)
T TIGR01978       229 VELAK  233 (243)
T ss_pred             HHHhc
Confidence            77543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.2e-28  Score=219.01  Aligned_cols=167  Identities=12%  Similarity=0.107  Sum_probs=119.5

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------  116 (280)
                      .++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+-....       
T Consensus        10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   88 (258)
T PRK14268         10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFI-RCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV   88 (258)
T ss_pred             ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence            4589999999999988899999999999999999999999999999 99999743      233332211110       


Q ss_pred             -ccccccceeeeeccccc--------------------------ccccccCc----hHHHHH--------------Hhhh
Q 023563          117 -DTRYGLDSIVTHDGVKL--------------------------PCCALTTL----SSFRQK--------------FGSD  151 (280)
Q Consensus       117 -~~~~~~~~v~~~~~~~~--------------------------~~~~~~~l----~~~~~~--------------~a~a  151 (280)
                       ..+..++++++......                          ..+...++    ....++              .+++
T Consensus        89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara  168 (258)
T PRK14268         89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIART  168 (258)
T ss_pred             HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHH
Confidence             11222334443211100                          00111111    011111              1678


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      |+.+|++||||||++..      .++++|+++. + |+|||++|||++++.+          +||++++|++ +++..|+
T Consensus       169 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~~~~~  236 (258)
T PRK14268        169 LAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAAR----------ISDYTGFFLMGELIEFGQ  236 (258)
T ss_pred             HHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEeCC
Confidence            99999999999997654      4788888885 3 7999999999999876          9999999999 9999999


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      ++++.
T Consensus       237 ~~~~~  241 (258)
T PRK14268        237 TRQIF  241 (258)
T ss_pred             HHHHh
Confidence            88876

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.95  E-value=6.7e-28  Score=205.51  Aligned_cols=154  Identities=20%  Similarity=0.231  Sum_probs=110.9

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC--------cccccccc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN--------KDTRYGLD  123 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~--------~~~~~~~~  123 (280)
                      |+++|++++|+++.+++++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....        ...+..+.
T Consensus         1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (178)
T cd03229           1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLL-RCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG   79 (178)
T ss_pred             CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence            4789999999988899999999999999999999999999999 99999743 22333221111        11123344


Q ss_pred             eeeeecccccccccccCc----h-HHHHH--HhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEe
Q 023563          124 SIVTHDGVKLPCCALTTL----S-SFRQK--FGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGL  190 (280)
Q Consensus       124 ~v~~~~~~~~~~~~~~~l----~-~~~~~--~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtH  190 (280)
                      ++++............++    + ...++  .+++++.+|++||||||++.      ..++++|++++++.|.|+|++||
T Consensus        80 ~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH  159 (178)
T cd03229          80 MVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH  159 (178)
T ss_pred             EEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            555443322111111121    1 12222  37899999999999999654      45788888887755799999999


Q ss_pred             chhHhhhccCCccccccccceEEEeec
Q 023563          191 DGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       191 dl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      |++++.+          +||++++|++
T Consensus       160 ~~~~~~~----------~~d~i~~l~~  176 (178)
T cd03229         160 DLDEAAR----------LADRVVVLRD  176 (178)
T ss_pred             CHHHHHH----------hcCEEEEEeC
Confidence            9999976          8999999975

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.95  E-value=2.3e-28  Score=236.68  Aligned_cols=173  Identities=16%  Similarity=0.124  Sum_probs=131.7

Q ss_pred             CCccEEEcCceEEeCC-----------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc
Q 023563           49 IHSMVSPRPPLFSLQN-----------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK  116 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~-----------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~  116 (280)
                      ..|+++++||++.|..           ..+++||||+|.+||++||+|+||||||||. ++|+|+.. .+..+.+...+.
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTla-r~i~gL~~P~~G~i~~~g~~~  355 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLA-RILAGLLPPSSGSIIFDGQDL  355 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEEeCccc
Confidence            5679999999999962           3689999999999999999999999999999 99999843 344555444320


Q ss_pred             --------ccccccceeeeecccc-cc-----------------------------cccccCchH-HHHHH---------
Q 023563          117 --------DTRYGLDSIVTHDGVK-LP-----------------------------CCALTTLSS-FRQKF---------  148 (280)
Q Consensus       117 --------~~~~~~~~v~~~~~~~-~~-----------------------------~~~~~~l~~-~~~~~---------  148 (280)
                              ..+..+..+||+.... .+                             .+...++.. ++.++         
T Consensus       356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr  435 (539)
T COG1123         356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR  435 (539)
T ss_pred             ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence                    1123344555521110 00                             011222221 23332         


Q ss_pred             -----hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 -----GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 -----a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                           |+||+.+|++|++|||++.+      +++++|+++.++.|.|+|+||||++.+.+          +||||++|.+
T Consensus       436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~----------i~drv~vm~~  505 (539)
T COG1123         436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRY----------IADRVAVMYD  505 (539)
T ss_pred             HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHh----------hCceEEEEEC
Confidence                 68999999999999997765      48999999999999999999999999997          9999999999


Q ss_pred             -eeccccCcceeeeee
Q 023563          218 -RCEFCGKRAFFTLRK  232 (280)
Q Consensus       218 -~i~~~g~~~~~~~~~  232 (280)
                       +++..|+.++++..+
T Consensus       506 G~iVE~G~~~~v~~~p  521 (539)
T COG1123         506 GRIVEEGPTEKVFENP  521 (539)
T ss_pred             CeEEEeCCHHHHhcCC
Confidence             999999888888443

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.95  E-value=2.2e-28  Score=239.42  Aligned_cols=167  Identities=16%  Similarity=0.119  Sum_probs=118.8

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~  122 (280)
                      +||+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+ ++|+|+.. ....+.+.....       ..+..+
T Consensus         3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   81 (501)
T PRK10762          3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMM-KVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI   81 (501)
T ss_pred             ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence            589999999999988999999999999999999999999999999 99999732 222222111000       001123


Q ss_pred             ceeeeeccccc-------------------------------ccccccCchHHHHHH--------------hhhhccCCC
Q 023563          123 DSIVTHDGVKL-------------------------------PCCALTTLSSFRQKF--------------GSDAYDQVD  157 (280)
Q Consensus       123 ~~v~~~~~~~~-------------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~  157 (280)
                      ++++|......                               ..+...++.+..++.              |+||+.+|+
T Consensus        82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~  161 (501)
T PRK10762         82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK  161 (501)
T ss_pred             EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence            33333211000                               001111111111111              678999999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +||||||++.+      .++++|++++++ |.|||++|||++++.+          +||+|++|++ +++..|+++++.
T Consensus       162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~  229 (501)
T PRK10762        162 VIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFE----------ICDDVTVFRDGQFIAEREVADLT  229 (501)
T ss_pred             EEEEeCCcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEeCCEEEEecCcCcCC
Confidence            99999997654      588888998765 9999999999999986          9999999999 988888887663

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.5e-28  Score=229.42  Aligned_cols=168  Identities=17%  Similarity=0.167  Sum_probs=120.1

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------ccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----------KDTRY  120 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----------~~~~~  120 (280)
                      ||++ ||+|+|+++.+  |+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+....          ...+.
T Consensus         1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   76 (352)
T PRK11144          1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLI-NAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR   76 (352)
T ss_pred             CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence            5788 99999988653  89999999999999999999999999 99999842 22222221110          01122


Q ss_pred             ccceeeeeccccc---------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563          121 GLDSIVTHDGVKL---------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ  165 (280)
Q Consensus       121 ~~~~v~~~~~~~~---------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~  165 (280)
                      .+++++|......                     ..+...++..+.++.              |++|+.+|++||||||+
T Consensus        77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt  156 (352)
T PRK11144         77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL  156 (352)
T ss_pred             CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence            3444444321110                     011112222222221              67899999999999997


Q ss_pred             cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563          166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT  233 (280)
Q Consensus       166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~  233 (280)
                      +.+      .+++.|+++.++.|+|+|++|||++++.+          +||++++|++ +++..|+++++..++.
T Consensus       157 s~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~----------~~d~i~~l~~G~i~~~g~~~~i~~~p~  221 (352)
T PRK11144        157 ASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILR----------LADRVVVLEQGKVKAFGPLEEVWASSA  221 (352)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHH----------hCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence            644      58888988887668999999999999976          9999999999 9999999998875443

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.95  E-value=4.7e-28  Score=216.38  Aligned_cols=165  Identities=12%  Similarity=0.100  Sum_probs=119.1

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C-----CeeEEEecCCc--------c
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K-----GRNVAVIKSNK--------D  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~-----g~~i~~~~~~~--------~  117 (280)
                      +|+++||+++|+++.+++|+||+|++||+++|+||||||||||+ ++|+|+.. .     ...+.+.....        .
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~   79 (247)
T TIGR00972         1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLL-RSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE   79 (247)
T ss_pred             CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHH-HHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence            58899999999988899999999999999999999999999999 99999853 2     33343322110        0


Q ss_pred             cccccceeeeeccccc---------------------------ccccccCch----HHHHHH--------------hhhh
Q 023563          118 TRYGLDSIVTHDGVKL---------------------------PCCALTTLS----SFRQKF--------------GSDA  152 (280)
Q Consensus       118 ~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~----~~~~~~--------------a~aL  152 (280)
                      .+..++++++......                           ..+...++.    ...++.              |++|
T Consensus        80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral  159 (247)
T TIGR00972        80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL  159 (247)
T ss_pred             HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            1222334433211100                           001111222    222211              6789


Q ss_pred             ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563          153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR  225 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~  225 (280)
                      +.+|++||||||++..      .++++|+++++  +.|||++|||++++.+          +||++++|++ +++..|++
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~~~~~~  227 (247)
T TIGR00972       160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAAR----------ISDRTAFFYDGELVEYGPT  227 (247)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHH----------hCCEEEEEECCEEEEeCCH
Confidence            9999999999997654      47888888865  4899999999999876          9999999999 99888888


Q ss_pred             ceee
Q 023563          226 AFFT  229 (280)
Q Consensus       226 ~~~~  229 (280)
                      +++.
T Consensus       228 ~~~~  231 (247)
T TIGR00972       228 EQIF  231 (247)
T ss_pred             HHHH
Confidence            8775

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.8e-28  Score=218.54  Aligned_cols=167  Identities=13%  Similarity=0.107  Sum_probs=119.0

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------  116 (280)
                      .++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+-....       
T Consensus        10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~   88 (259)
T PRK14274         10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFI-KTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL   88 (259)
T ss_pred             CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence            4589999999999988999999999999999999999999999999 99998742      123332211110       


Q ss_pred             -ccccccceeeeeccccc---------------------------ccccccCch----HHHHHH--------------hh
Q 023563          117 -DTRYGLDSIVTHDGVKL---------------------------PCCALTTLS----SFRQKF--------------GS  150 (280)
Q Consensus       117 -~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~----~~~~~~--------------a~  150 (280)
                       ..+..++++++......                           ..+...++.    +...+.              ++
T Consensus        89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar  168 (259)
T PRK14274         89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR  168 (259)
T ss_pred             HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence             01122333333211000                           000011111    011111              56


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +++.+|++||||||++..      .+++.|.++.+  ++|+|++||+++++.+          +||++++|++ +++..|
T Consensus       169 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~----------~~d~i~~l~~G~i~~~g  236 (259)
T PRK14274        169 ALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQQAAR----------VSDQTAFFYMGELVECN  236 (259)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHH----------hCCEEEEEECCEEEEEC
Confidence            899999999999997544      57888888853  7899999999999876          9999999999 999999


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       237 ~~~~~~  242 (259)
T PRK14274        237 DTNKMF  242 (259)
T ss_pred             CHHHHh
Confidence            998876

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.95  E-value=6.7e-28  Score=204.61  Aligned_cols=153  Identities=19%  Similarity=0.269  Sum_probs=111.8

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccccceee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDSIV  126 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~v~  126 (280)
                      |+++|++++|+++.+|+++||++++||+++|+||||||||||+ ++|+|+.. ....+.+-...     ...+..+.+++
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (173)
T cd03230           1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLI-KIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP   79 (173)
T ss_pred             CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence            4689999999888899999999999999999999999999999 99999842 22333221111     11223445555


Q ss_pred             eecccccccccccC--ch-HHHH--HHhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563          127 THDGVKLPCCALTT--LS-SFRQ--KFGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYL  195 (280)
Q Consensus       127 ~~~~~~~~~~~~~~--l~-~~~~--~~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~  195 (280)
                      +............+  ++ ...+  ..+++|+.+|++||||||++.      ..++++|++++++ |.|+|++|||.+++
T Consensus        80 q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~  158 (173)
T cd03230          80 EEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEA  158 (173)
T ss_pred             cCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHH
Confidence            54332221111122  21 1112  237899999999999999654      4588999999876 99999999999998


Q ss_pred             hhccCCccccccccceEEEeec
Q 023563          196 RRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       196 ~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      .+          +||++++|++
T Consensus       159 ~~----------~~d~i~~l~~  170 (173)
T cd03230         159 ER----------LCDRVAILNN  170 (173)
T ss_pred             HH----------hCCEEEEEeC
Confidence            76          8999999987

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.3e-28  Score=217.26  Aligned_cols=166  Identities=13%  Similarity=0.079  Sum_probs=118.3

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc--------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK--------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~--------  116 (280)
                      ++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+...      ...+.+-....        
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   81 (253)
T PRK14267          3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLL-RTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI   81 (253)
T ss_pred             ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence            479999999999988899999999999999999999999999999 999998431      23332211100        


Q ss_pred             ccccccceeeeeccccc-----------------------------ccccccCch----HHHHHH--------------h
Q 023563          117 DTRYGLDSIVTHDGVKL-----------------------------PCCALTTLS----SFRQKF--------------G  149 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~~-----------------------------~~~~~~~l~----~~~~~~--------------a  149 (280)
                      ..+..++++++......                             ..+...++.    ...++.              +
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  161 (253)
T PRK14267         82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA  161 (253)
T ss_pred             HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence            11122333333211100                             000011110    011111              5


Q ss_pred             hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      ++++.+|++||||||++..      .+++.|+++++  ++|||++|||++++.+          +||++++|++ +++..
T Consensus       162 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~  229 (253)
T PRK14267        162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAAR----------VSDYVAFLYLGKLIEV  229 (253)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHh----------hCCEEEEEECCEEEEe
Confidence            7899999999999996543      57888888854  6899999999999876          9999999999 99999


Q ss_pred             cCcceee
Q 023563          223 GKRAFFT  229 (280)
Q Consensus       223 g~~~~~~  229 (280)
                      |+++++.
T Consensus       230 ~~~~~~~  236 (253)
T PRK14267        230 GPTRKVF  236 (253)
T ss_pred             CCHHHHH
Confidence            9988775

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.3e-28  Score=217.50  Aligned_cols=166  Identities=13%  Similarity=0.084  Sum_probs=119.8

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc--------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK--------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~--------  116 (280)
                      ++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+...      ...+.+.....        
T Consensus         6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   84 (254)
T PRK14273          6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFL-RTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL   84 (254)
T ss_pred             ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHH-HHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence            489999999999988899999999999999999999999999999 999998542      23333221110        


Q ss_pred             ccccccceeeeecccc---------cc------------------cccccCc----hHHHHHH--------------hhh
Q 023563          117 DTRYGLDSIVTHDGVK---------LP------------------CCALTTL----SSFRQKF--------------GSD  151 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~---------~~------------------~~~~~~l----~~~~~~~--------------a~a  151 (280)
                      ..+..+++++|.....         +.                  .+...++    .+..++.              |++
T Consensus        85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lara  164 (254)
T PRK14273         85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIART  164 (254)
T ss_pred             HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHH
Confidence            1122344444421110         00                  0000011    0111111              678


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      |+.+|++||||||++..      .++++|++++ + +.|||++||+++++.+          +||++++|++ +++..|+
T Consensus       165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~  232 (254)
T PRK14273        165 LAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGR----------ISDRTAFFLNGCIEEESS  232 (254)
T ss_pred             HHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCC
Confidence            99999999999997654      4788888885 3 7999999999999876          9999999999 9999999


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      ++++.
T Consensus       233 ~~~~~  237 (254)
T PRK14273        233 TDELF  237 (254)
T ss_pred             HHHHH
Confidence            88876

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.95  E-value=2.9e-28  Score=218.36  Aligned_cols=168  Identities=16%  Similarity=0.071  Sum_probs=119.5

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----c-----c--
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----K-----D--  117 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~-----~--  117 (280)
                      ++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-...     .     .  
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (253)
T TIGR02323         2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLL-GCLAGRLAPDHGTATYIMRSGAELELYQLSEAER   80 (253)
T ss_pred             ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence            479999999999888899999999999999999999999999999 99999832 22222221111     0     0  


Q ss_pred             ---cccccceeeeeccc-cc-----------------------------ccccccCch-HHHHHH--------------h
Q 023563          118 ---TRYGLDSIVTHDGV-KL-----------------------------PCCALTTLS-SFRQKF--------------G  149 (280)
Q Consensus       118 ---~~~~~~~v~~~~~~-~~-----------------------------~~~~~~~l~-~~~~~~--------------a  149 (280)
                         .+..++++++.... ..                             ..+...++. ...++.              |
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la  160 (253)
T TIGR02323        81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA  160 (253)
T ss_pred             HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence               01123333332110 00                             000111121 111111              6


Q ss_pred             hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      ++|+.+|++||||||++.+      .++++|+++.++.|.|||++||+++++.+          +||++++|++ +++..
T Consensus       161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~----------~~d~~~~l~~G~i~~~  230 (253)
T TIGR02323       161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARL----------LAQRLLVMQQGRVVES  230 (253)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hcCEEEEEECCEEEEE
Confidence            7899999999999997654      47888888876558999999999999976          8999999999 99888


Q ss_pred             cCcceee
Q 023563          223 GKRAFFT  229 (280)
Q Consensus       223 g~~~~~~  229 (280)
                      |+++++.
T Consensus       231 ~~~~~~~  237 (253)
T TIGR02323       231 GLTDQVL  237 (253)
T ss_pred             CCHHHHh
Confidence            8887775

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.95  E-value=7.2e-28  Score=215.79  Aligned_cols=166  Identities=16%  Similarity=0.129  Sum_probs=118.0

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------------
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------------  116 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------------  116 (280)
                      |+++||++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....               
T Consensus         1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~   79 (252)
T TIGR03005         1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTIL-RILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE   79 (252)
T ss_pred             CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence            4789999999988999999999999999999999999999999 99999732 222222111000               


Q ss_pred             ----ccccccceeeeecccccc----------------------------cccccCchHHHHHH--------------hh
Q 023563          117 ----DTRYGLDSIVTHDGVKLP----------------------------CCALTTLSSFRQKF--------------GS  150 (280)
Q Consensus       117 ----~~~~~~~~v~~~~~~~~~----------------------------~~~~~~l~~~~~~~--------------a~  150 (280)
                          ..+..++++++.......                            .+...++..+.++.              ++
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar  159 (252)
T TIGR03005        80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR  159 (252)
T ss_pred             hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence                112233334432111100                            01111222211111              56


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +|+.+|++||||||++.+      .+++.|++++++.|.|+|++|||++++.+          +||++++|++ +++..|
T Consensus       160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~~~g  229 (252)
T TIGR03005       160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFARE----------FADRVCFFDKGRIVEQG  229 (252)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH----------hcCEEEEEECCEEEEeC
Confidence            899999999999996544      57888888876558999999999999875          8999999999 998888


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       230 ~~~~~~  235 (252)
T TIGR03005       230 KPDEIF  235 (252)
T ss_pred             CHHHHh
Confidence            887775

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.4e-28  Score=221.08  Aligned_cols=168  Identities=17%  Similarity=0.146  Sum_probs=120.6

Q ss_pred             CccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-C---eeEEEecCCc------c
Q 023563           50 HSMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-G---RNVAVIKSNK------D  117 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g---~~i~~~~~~~------~  117 (280)
                      +++|+++|++++|++  +.+++++||+|++||+++|+||||||||||+ ++|+|+... .   ..+.+-....      .
T Consensus         3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl-~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~   81 (282)
T PRK13640          3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTIS-KLINGLLLPDDNPNSKITVDGITLTAKTVWD   81 (282)
T ss_pred             CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHH-HHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence            458999999999964  5699999999999999999999999999999 999998532 1   2333221111      0


Q ss_pred             cccccceeeeecc-cccc---------------------------cccccCchHHHHHH--------------hhhhccC
Q 023563          118 TRYGLDSIVTHDG-VKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQ  155 (280)
Q Consensus       118 ~~~~~~~v~~~~~-~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~  155 (280)
                      .+..++++++... ....                           .+...++..+.++.              ++||+.+
T Consensus        82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~  161 (282)
T PRK13640         82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE  161 (282)
T ss_pred             HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence            1122334443211 0000                           01111222222111              5689999


Q ss_pred             CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      |++||||||++.+      .++++|++++++.|+|||++||+++++.           +||++++|++ ++++.|+++++
T Consensus       162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~~  230 (282)
T PRK13640        162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-----------MADQVLVLDDGKLLAQGSPVEI  230 (282)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-----------hCCEEEEEECCEEEEeCCHHHH
Confidence            9999999996654      5788888887655999999999999884           7999999999 99999999887


Q ss_pred             e
Q 023563          229 T  229 (280)
Q Consensus       229 ~  229 (280)
                      .
T Consensus       231 ~  231 (282)
T PRK13640        231 F  231 (282)
T ss_pred             h
Confidence            6

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.95  E-value=3.4e-28  Score=211.37  Aligned_cols=154  Identities=21%  Similarity=0.241  Sum_probs=106.6

Q ss_pred             EEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe---------eEEEecCC
Q 023563           54 SPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR---------NVAVIKSN  115 (280)
Q Consensus        54 ~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~---------~i~~~~~~  115 (280)
                      +++|++++|++ +.+|+++||+|++|++++|+||||||||||+ ++|+|+..        +|.         .+++++|.
T Consensus         1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~   79 (205)
T cd03226           1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLA-KILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD   79 (205)
T ss_pred             CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence            36899999987 8899999999999999999999999999999 99999732        222         23444443


Q ss_pred             ccc---ccccceeee---e-cc----cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH---
Q 023563          116 KDT---RYGLDSIVT---H-DG----VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF---  167 (280)
Q Consensus       116 ~~~---~~~~~~v~~---~-~~----~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~---  167 (280)
                      ...   ...+...+.   . ..    .....+...++.++.++.              +++|+.+|++||||||++.   
T Consensus        80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~  159 (205)
T cd03226          80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY  159 (205)
T ss_pred             hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence            210   000000000   0 00    000111111222211111              6789999999999999654   


Q ss_pred             ---HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563          168 ---EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC  219 (280)
Q Consensus       168 ---~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i  219 (280)
                         ..++++|++++++ |.|||++|||++++.+          +||++++|++ ++
T Consensus       160 ~~~~~l~~~l~~~~~~-~~tii~~sH~~~~~~~----------~~d~i~~l~~G~i  204 (205)
T cd03226         160 KNMERVGELIRELAAQ-GKAVIVITHDYEFLAK----------VCDRVLLLANGAI  204 (205)
T ss_pred             HHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEE
Confidence               4588888888765 9999999999999876          8999999988 65

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6e-28  Score=216.06  Aligned_cols=166  Identities=13%  Similarity=0.061  Sum_probs=117.6

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---h---CCeeEEEecCCc--------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---Q---KGRNVAVIKSNK--------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~---~g~~i~~~~~~~--------  116 (280)
                      ++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.   .   ....+.+.....        
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~   82 (252)
T PRK14239          4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLL-RSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV   82 (252)
T ss_pred             ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence            479999999999988899999999999999999999999999999 9999872   2   122332221110        


Q ss_pred             ccccccceeeeeccccc---------c------------------cccccCc----hHHHHHH--------------hhh
Q 023563          117 DTRYGLDSIVTHDGVKL---------P------------------CCALTTL----SSFRQKF--------------GSD  151 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~~---------~------------------~~~~~~l----~~~~~~~--------------a~a  151 (280)
                      ..+..+++++|......         .                  .+...++    .+..++.              |++
T Consensus        83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  162 (252)
T PRK14239         83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV  162 (252)
T ss_pred             hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence            01122333333211100         0                  0000111    0111111              568


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      ++.+|++||||||++..      .++++|+++.+  +.|||++|||++++.+          +||++++|++ +++..|+
T Consensus       163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~  230 (252)
T PRK14239        163 LATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASR----------ISDRTGFFLDGDLIEYND  230 (252)
T ss_pred             HhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHH----------hCCEEEEEECCEEEEeCC
Confidence            99999999999997654      47888888854  6899999999998876          9999999999 9999999


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      ++++.
T Consensus       231 ~~~~~  235 (252)
T PRK14239        231 TKQMF  235 (252)
T ss_pred             HHHHH
Confidence            88876

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.3e-28  Score=237.57  Aligned_cols=167  Identities=16%  Similarity=0.127  Sum_probs=121.5

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---CeeEEEecCCc-------cccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---GRNVAVIKSNK-------DTRY  120 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---g~~i~~~~~~~-------~~~~  120 (280)
                      +||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+...   ...+.+.....       ..+.
T Consensus         4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (506)
T PRK13549          4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLM-KVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA   82 (506)
T ss_pred             ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence            589999999999988999999999999999999999999999999 999998542   33333221110       0112


Q ss_pred             ccceeeeecccccc------------------------------cccccCchHHHHH--------------HhhhhccCC
Q 023563          121 GLDSIVTHDGVKLP------------------------------CCALTTLSSFRQK--------------FGSDAYDQV  156 (280)
Q Consensus       121 ~~~~v~~~~~~~~~------------------------------~~~~~~l~~~~~~--------------~a~aL~~~p  156 (280)
                      .+++++|.......                              .+...++....++              .|++|+.+|
T Consensus        83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  162 (506)
T PRK13549         83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA  162 (506)
T ss_pred             CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence            34444443211000                              0000111111110              057899999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++||||||++.+      .++++|.+++++ |.|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvi~~tH~~~~~~~----------~~d~v~~l~~G~i~~~~~~~~~~  231 (506)
T PRK13549        163 RLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKA----------ISDTICVIRDGRHIGTRPAAGMT  231 (506)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHH----------hcCEEEEEECCEEeeecccccCC
Confidence            999999997654      588899998765 9999999999999986          9999999999 999999887764

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.95  E-value=2.3e-28  Score=221.46  Aligned_cols=165  Identities=21%  Similarity=0.171  Sum_probs=117.0

Q ss_pred             EEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------c----ccccc
Q 023563           54 SPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------D----TRYGL  122 (280)
Q Consensus        54 ~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~----~~~~~  122 (280)
                      .++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-....      .    .+..+
T Consensus        26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i  104 (269)
T cd03294          26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLL-RCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI  104 (269)
T ss_pred             hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence            678999999999999999999999999999999999999999 99999842 222222111000      0    01123


Q ss_pred             ceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563          123 DSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGI  161 (280)
Q Consensus       123 ~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL  161 (280)
                      +++++......                           ..+...++..+.++.              |++|+.+|++|||
T Consensus       105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illL  184 (269)
T cd03294         105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM  184 (269)
T ss_pred             EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            33333211100                           001111222222111              6789999999999


Q ss_pred             eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||++..      .++++|.+++++.|+|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~  249 (269)
T cd03294         185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALR----------LGDRIAIMKDGRLVQVGTPEEIL  249 (269)
T ss_pred             cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hcCEEEEEECCEEEEeCCHHHHH
Confidence            9997654      57888888876558999999999999876          9999999999 888888888775

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.9e-28  Score=221.41  Aligned_cols=168  Identities=13%  Similarity=0.104  Sum_probs=117.9

Q ss_pred             ccEEEcCceEEeCCe-----eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----------
Q 023563           51 SMVSPRPPLFSLQNR-----NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----------  114 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~-----~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----------  114 (280)
                      ..|+++|++++|+++     .+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..          
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~   83 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMI-QLTNGLIISETGQTIVGDYAIPANLKKIK   83 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEccccccccc
Confidence            368999999999764     499999999999999999999999999999 99999732 1122211100          


Q ss_pred             -Ccccccccceeeeecc-ccc---------------------------ccccccCc-hHHHHHH--------------hh
Q 023563          115 -NKDTRYGLDSIVTHDG-VKL---------------------------PCCALTTL-SSFRQKF--------------GS  150 (280)
Q Consensus       115 -~~~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l-~~~~~~~--------------a~  150 (280)
                       ....+..++++++... ..+                           ..+...++ ..+.++.              |+
T Consensus        84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar  163 (289)
T PRK13645         84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG  163 (289)
T ss_pred             cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence             0011122333333210 000                           00111122 1121111              57


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      ||+.+|++||||||++..      .++++|+++.++.|+|||++|||++++.+          +||++++|++ +++..|
T Consensus       164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~----------~~d~i~~l~~G~i~~~g  233 (289)
T PRK13645        164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLR----------IADEVIVMHEGKVISIG  233 (289)
T ss_pred             HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEeC
Confidence            899999999999997654      47888888876558999999999999876          9999999999 998899


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       234 ~~~~~~  239 (289)
T PRK13645        234 SPFEIF  239 (289)
T ss_pred             CHHHHh
Confidence            988775

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.95  E-value=3.4e-28  Score=218.47  Aligned_cols=165  Identities=23%  Similarity=0.263  Sum_probs=116.8

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEEEe
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVAVI  112 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~~~  112 (280)
                      |+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..        +|.            .++|+
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLL-RLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV   80 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence            6899999999999999999999999999999999999999999 99999732        222            23344


Q ss_pred             cCCccccc--ccceeeeec-----c-----------cccccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          113 KSNKDTRY--GLDSIVTHD-----G-----------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       113 ~~~~~~~~--~~~~v~~~~-----~-----------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      +|......  .+...+...     .           .....+...++.++.++.              +++++.+|++||
T Consensus        81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll  160 (256)
T TIGR03873        81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL  160 (256)
T ss_pred             cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            44321100  000000000     0           000001111222211111              568999999999


Q ss_pred             EeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          161 IDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       161 LDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||++.      ..+.++|++++++ |.|||++|||++++.+          +||+|++|++ ++++.|+++++.
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~  225 (256)
T TIGR03873       161 LDEPTNHLDVRAQLETLALVRELAAT-GVTVVAALHDLNLAAS----------YCDHVVVLDGGRVVAAGPPREVL  225 (256)
T ss_pred             EcCccccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH----------hCCEEEEEeCCCEEEecCHHHhh
Confidence            9999664      3578888888765 8999999999999976          9999999999 999899888765

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.95  E-value=5.1e-28  Score=227.76  Aligned_cols=162  Identities=19%  Similarity=0.196  Sum_probs=117.3

Q ss_pred             EEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcc---cccccceeeee
Q 023563           60 FSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKD---TRYGLDSIVTH  128 (280)
Q Consensus        60 ~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~---~~~~~~~v~~~  128 (280)
                      |.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..        +|.++....+...   .+..+++++|+
T Consensus         1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLL-r~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~   79 (363)
T TIGR01186         1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTV-RMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ   79 (363)
T ss_pred             CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHH-HHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence            468888999999999999999999999999999999 99999842        2322221111000   02344455543


Q ss_pred             cccccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH
Q 023563          129 DGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF  167 (280)
Q Consensus       129 ~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~  167 (280)
                      ...+..                           .+...++..+.+++              |+||+.+|++||||||++.
T Consensus        80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa  159 (363)
T TIGR01186        80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA  159 (363)
T ss_pred             CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            222111                           11222333322222              6789999999999999654


Q ss_pred             ------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563          168 ------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK  232 (280)
Q Consensus       168 ------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~  232 (280)
                            ..+.+.+.++.++.|+|||++|||++++.+          +||+|++|++ +++..|+++++..+.
T Consensus       160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~----------~~drI~vl~~G~iv~~g~~~ei~~~p  221 (363)
T TIGR01186       160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIR----------IGDRIVIMKAGEIVQVGTPDEILRNP  221 (363)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence                  458888888877669999999999999976          9999999999 999999999887443

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.3e-28  Score=220.63  Aligned_cols=166  Identities=16%  Similarity=0.137  Sum_probs=116.4

Q ss_pred             cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------
Q 023563           52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----------  115 (280)
Q Consensus        52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----------  115 (280)
                      .|+++||+++|++     +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....          
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~   80 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIM-QLLNGLHVPTQGSVRVDDTLITSTSKNKDI   80 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccccccCH
Confidence            4899999999974     3699999999999999999999999999999 99999732 11112111100          


Q ss_pred             cccccccceeeeecc-ccc---------------------------ccccccCch-HHHHHH--------------hhhh
Q 023563          116 KDTRYGLDSIVTHDG-VKL---------------------------PCCALTTLS-SFRQKF--------------GSDA  152 (280)
Q Consensus       116 ~~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l~-~~~~~~--------------a~aL  152 (280)
                      ...+..++++++... ..+                           ..+...++. .+.++.              |++|
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al  160 (280)
T PRK13649         81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL  160 (280)
T ss_pred             HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence            001112223332210 000                           001112232 111111              6789


Q ss_pred             ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563          153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR  225 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~  225 (280)
                      +.+|++||||||++.+      .+++.|++++++ |+|||++|||++++.+          +||++++|++ +++..|++
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~~~g~~  229 (280)
T PRK13649        161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVAN----------YADFVYVLEKGKLVLSGKP  229 (280)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHH----------hCCEEEEEECCEEEEeCCH
Confidence            9999999999997654      478888888765 9999999999999976          9999999999 98889998


Q ss_pred             ceee
Q 023563          226 AFFT  229 (280)
Q Consensus       226 ~~~~  229 (280)
                      +++.
T Consensus       230 ~~~~  233 (280)
T PRK13649        230 KDIF  233 (280)
T ss_pred             HHHh
Confidence            8876

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.95  E-value=8.6e-28  Score=205.53  Aligned_cols=151  Identities=19%  Similarity=0.163  Sum_probs=109.1

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------ccccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------KDTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------~~~~~~~  122 (280)
                      ++|+++|++++|    +++++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....       ...+..+
T Consensus         3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (182)
T cd03215           3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELA-EALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI   77 (182)
T ss_pred             cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence            479999999999    89999999999999999999999999999 99999843 23333222111       1112334


Q ss_pred             ceeeeecc--ccccccc-ccCchH-------HHHH--HhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCE
Q 023563          123 DSIVTHDG--VKLPCCA-LTTLSS-------FRQK--FGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKT  184 (280)
Q Consensus       123 ~~v~~~~~--~~~~~~~-~~~l~~-------~~~~--~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~t  184 (280)
                      .+++++..  ...+... ..++..       ..++  .|++++.+|++||||||++.      ..+++.++++.++ |.|
T Consensus        78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~t  156 (182)
T cd03215          78 AYVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKA  156 (182)
T ss_pred             EEecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCE
Confidence            55554421  1222111 112211       1122  37899999999999999654      4588888888765 899


Q ss_pred             EEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          185 VIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       185 viivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +|++||+++++.+          +||++++|++
T Consensus       157 iii~sh~~~~~~~----------~~d~v~~l~~  179 (182)
T cd03215         157 VLLISSELDELLG----------LCDRILVMYE  179 (182)
T ss_pred             EEEEeCCHHHHHH----------hCCEEEEecC
Confidence            9999999999986          9999999987

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=7.3e-28  Score=218.04  Aligned_cols=168  Identities=17%  Similarity=0.107  Sum_probs=118.7

Q ss_pred             CccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------cccc
Q 023563           50 HSMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRY  120 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~  120 (280)
                      .++|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....      ..+.
T Consensus         5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~   83 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIA-KLMIGIEKVKSGEIFYNNQAITDDNFEKLRK   83 (269)
T ss_pred             CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence            458999999999975  4599999999999999999999999999999 99999842 222232211110      0112


Q ss_pred             ccceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCE
Q 023563          121 GLDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       121 ~~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~l  158 (280)
                      .++++++... ...                           ..+...++..+.++.              ++|++.+|++
T Consensus        84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l  163 (269)
T PRK13648         84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV  163 (269)
T ss_pred             heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            2333333211 000                           001111111111111              5789999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||++..      .+++.|++++++.|.|||++||+++++.           .||++++|++ +++..|+++++.
T Consensus       164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~~~  230 (269)
T PRK13648        164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAM-----------EADHVIVMNKGTVYKEGTPTEIF  230 (269)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHh-----------cCCEEEEEECCEEEEecCHHHHh
Confidence            9999997654      4788888887655899999999999885           5999999999 999999988876

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.95  E-value=6.9e-28  Score=211.50  Aligned_cols=157  Identities=17%  Similarity=0.092  Sum_probs=107.0

Q ss_pred             cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------c---
Q 023563           52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------D---  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~---  117 (280)
                      +|+++|++++|++    +.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-....      .   
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLL-HLLGGLDNPTSGEVLFNGQSLSKLSSNERAK   79 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence            4789999999964    5799999999999999999999999999999 99999732 122221111000      0   


Q ss_pred             cc-cccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccC
Q 023563          118 TR-YGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQ  155 (280)
Q Consensus       118 ~~-~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~  155 (280)
                      .+ ..++++++......                           ..+...++....++.              +++++.+
T Consensus        80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  159 (221)
T TIGR02211        80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ  159 (221)
T ss_pred             HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence            00 12333333211100                           001111222211111              5689999


Q ss_pred             CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563          156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                      |++||||||++.+      .+++.|++++++.|.|||++|||++++.           .||++++|++ +++
T Consensus       160 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~-----------~~d~v~~l~~G~i~  220 (221)
T TIGR02211       160 PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK-----------KLDRVLEMKDGQLF  220 (221)
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-----------hcCEEEEEeCCEec
Confidence            9999999997654      4788888887655899999999999885           5799999998 653

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.95  E-value=8.2e-28  Score=217.76  Aligned_cols=168  Identities=14%  Similarity=0.062  Sum_probs=118.5

Q ss_pred             ccEEEcCceEEeC---------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc----
Q 023563           51 SMVSPRPPLFSLQ---------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK----  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~---------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~----  116 (280)
                      ++|+++||++.|+         ++.+++|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....    
T Consensus         2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~sG~i~~~g~~~~~~~   80 (268)
T PRK10419          2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLA-RLLVGLESPSQGNVSWRGEPLAKLN   80 (268)
T ss_pred             ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEeccccC
Confidence            3799999999997         47899999999999999999999999999999 99999732 222222111100    


Q ss_pred             -----ccccccceeeeeccc-cc-----------------------------ccccccCch-HHHHHH------------
Q 023563          117 -----DTRYGLDSIVTHDGV-KL-----------------------------PCCALTTLS-SFRQKF------------  148 (280)
Q Consensus       117 -----~~~~~~~~v~~~~~~-~~-----------------------------~~~~~~~l~-~~~~~~------------  148 (280)
                           ..+..++++++.... +.                             ..+...++. .+.++.            
T Consensus        81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl  160 (268)
T PRK10419         81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV  160 (268)
T ss_pred             hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence                 011123333332100 00                             001111111 111111            


Q ss_pred             --hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563          149 --GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC  219 (280)
Q Consensus       149 --a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i  219 (280)
                        +++|+.+|++||||||++.+      .+++.|++++++.|.|+|++||+++++.+          +||++++|++ ++
T Consensus       161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~----------~~d~i~~l~~G~i  230 (268)
T PRK10419        161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVER----------FCQRVMVMDNGQI  230 (268)
T ss_pred             HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHH----------hCCEEEEEECCEE
Confidence              57899999999999997654      47888888877568999999999999976          9999999999 99


Q ss_pred             ccccCcceee
Q 023563          220 EFCGKRAFFT  229 (280)
Q Consensus       220 ~~~g~~~~~~  229 (280)
                      +..|+++++.
T Consensus       231 ~~~g~~~~~~  240 (268)
T PRK10419        231 VETQPVGDKL  240 (268)
T ss_pred             eeeCChhhcc
Confidence            9999888765

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=9.2e-28  Score=214.85  Aligned_cols=166  Identities=12%  Similarity=0.053  Sum_probs=117.6

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---h---CCeeEEEecCCc--------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---Q---KGRNVAVIKSNK--------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~---~g~~i~~~~~~~--------  116 (280)
                      ++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.   .   ....+.+.....        
T Consensus         2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   80 (250)
T PRK14245          2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFL-RLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD   80 (250)
T ss_pred             cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHH-HHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence            589999999999988899999999999999999999999999999 9998852   1   122222211100        


Q ss_pred             ccccccceeeeecccc---------------------------cccccccCch----HHHHHH--------------hhh
Q 023563          117 DTRYGLDSIVTHDGVK---------------------------LPCCALTTLS----SFRQKF--------------GSD  151 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~---------------------------~~~~~~~~l~----~~~~~~--------------a~a  151 (280)
                      ..+..++++++.....                           ...+...++.    ....+.              +++
T Consensus        81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  160 (250)
T PRK14245         81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA  160 (250)
T ss_pred             HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence            0111233333221100                           0001111111    111111              578


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      |+.+|++||||||++..      .+++.|+++. + ++|||++|||++++.+          +||++++|++ +++..|+
T Consensus       161 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~----------~~d~v~~l~~G~~~~~~~  228 (250)
T PRK14245        161 MAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAAR----------VSDKTAFFYMGEMVEYDD  228 (250)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHh----------hCCEEEEEECCEEEEECC
Confidence            99999999999997654      5788888884 4 7999999999999876          9999999999 9999999


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      ++++.
T Consensus       229 ~~~~~  233 (250)
T PRK14245        229 TKKIF  233 (250)
T ss_pred             HHHHh
Confidence            99886

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.95  E-value=8.3e-28  Score=218.09  Aligned_cols=166  Identities=19%  Similarity=0.239  Sum_probs=118.1

Q ss_pred             cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe---------eEEEec
Q 023563           52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR---------NVAVIK  113 (280)
Q Consensus        52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~---------~i~~~~  113 (280)
                      +|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..        +|.         .++|++
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~   84 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLF-KALMGFVRLASGKISILGQPTRQALQKNLVAYVP   84 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEhHHhhccceEEEec
Confidence            699999999995 57899999999999999999999999999999 99999832        221         355665


Q ss_pred             CCcccc--c--ccceeee---ec--c-----------cccccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563          114 SNKDTR--Y--GLDSIVT---HD--G-----------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVI  159 (280)
Q Consensus       114 ~~~~~~--~--~~~~v~~---~~--~-----------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lL  159 (280)
                      |.....  .  .+...+.   ..  .           .....+...++....++.              +++|+.+|++|
T Consensus        85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll  164 (272)
T PRK15056         85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI  164 (272)
T ss_pred             cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            543210  0  0000000   00  0           000011112222222211              67899999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceee
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFT  229 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~  229 (280)
                      |||||++.+      .+.++|++++++ |+|||++|||++++.+          +||++++++.+++..|+++++.
T Consensus       165 llDEPt~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~~~~~~~----------~~d~v~~~~G~i~~~g~~~~~~  229 (272)
T PRK15056        165 LLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTE----------FCDYTVMVKGTVLASGPTETTF  229 (272)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEECCEEEeecCHHhcc
Confidence            999997654      588888888765 9999999999999876          9999988833888899988875

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.95  E-value=4.6e-28  Score=211.46  Aligned_cols=153  Identities=18%  Similarity=0.179  Sum_probs=106.4

Q ss_pred             EEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------ccccc
Q 023563           53 VSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTRYG  121 (280)
Q Consensus        53 l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~~~  121 (280)
                      |+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-....         ..+..
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   79 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLL-KLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK   79 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence            478999999964 6899999999999999999999999999999 99999832 222232211100         01122


Q ss_pred             cceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          122 LDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       122 ~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      +.++++......                           ..+...++....++.              +++++.+|++||
T Consensus        80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  159 (214)
T cd03292          80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI  159 (214)
T ss_pred             eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence            333333211100                           001111222222111              578999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ||||++..      .+.+.|+++.++ |.|||++||+++++.+          +||++++|++
T Consensus       160 lDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~----------~~d~i~~l~~  211 (214)
T cd03292         160 ADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDT----------TRHRVIALER  211 (214)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence            99997654      478888888765 9999999999999986          8999999986

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.95  E-value=4.9e-28  Score=211.17  Aligned_cols=157  Identities=17%  Similarity=0.167  Sum_probs=108.1

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----ccccccceee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGLDSIV  126 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~~~v~  126 (280)
                      |+++|++++|+++.+++|+||+|++| +++|+||||||||||+ ++|+|+.. ....+.+.....     ..+..+.+++
T Consensus         1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   78 (211)
T cd03264           1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLM-RILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP   78 (211)
T ss_pred             CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence            47899999999889999999999999 9999999999999999 99999732 222222111100     0011122222


Q ss_pred             eecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563          127 THDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ  165 (280)
Q Consensus       127 ~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~  165 (280)
                      +.....                           ...+...++..+.++.              |++++.+|++||||||+
T Consensus        79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  158 (211)
T cd03264          79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT  158 (211)
T ss_pred             CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            211100                           0011112232222211              67899999999999997


Q ss_pred             cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +..      .++++|+++++  +.|||++|||++++.+          +||++++|++ ++++.|
T Consensus       159 ~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~----------~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         159 AGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVES----------LCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             ccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEecC
Confidence            654      47788888865  5899999999999876          8999999999 776543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=8.5e-28  Score=214.96  Aligned_cols=166  Identities=15%  Similarity=0.077  Sum_probs=117.6

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc------cc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------DT  118 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------~~  118 (280)
                      ++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+.....      ..
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   80 (250)
T PRK14247          2 NKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLL-RVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL   80 (250)
T ss_pred             ceEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence            369999999999988899999999999999999999999999999 99999853      123332211100      01


Q ss_pred             ccccceeeeeccccc-----------------------------ccccccCch----HHHHH--------------Hhhh
Q 023563          119 RYGLDSIVTHDGVKL-----------------------------PCCALTTLS----SFRQK--------------FGSD  151 (280)
Q Consensus       119 ~~~~~~v~~~~~~~~-----------------------------~~~~~~~l~----~~~~~--------------~a~a  151 (280)
                      +..+++++|......                             ..+...++.    ...++              .|++
T Consensus        81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara  160 (250)
T PRK14247         81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA  160 (250)
T ss_pred             hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence            122333333211000                             000111111    01111              1678


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      |+.+|++||||||++..      .+++.|+++. + |.|+|++|||++++.+          +||++++|++ ++++.|+
T Consensus       161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~  228 (250)
T PRK14247        161 LAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAAR----------ISDYVAFLYKGQIVEWGP  228 (250)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHH----------hcCEEEEEECCeEEEECC
Confidence            99999999999996654      5788888875 3 8999999999999876          8999999999 9988899


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      ++++.
T Consensus       229 ~~~~~  233 (250)
T PRK14247        229 TREVF  233 (250)
T ss_pred             HHHHH
Confidence            88775

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.95  E-value=6.3e-28  Score=216.64  Aligned_cols=166  Identities=14%  Similarity=0.085  Sum_probs=117.9

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-----CeeEEEecCCc----cccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-----GRNVAVIKSNK----DTRYGL  122 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-----g~~i~~~~~~~----~~~~~~  122 (280)
                      +|+++|++++| ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+...     ...+.+.....    ..+..+
T Consensus         4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i   81 (254)
T PRK10418          4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTC-AAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI   81 (254)
T ss_pred             EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence            69999999999 56799999999999999999999999999999 999998432     22222211100    001122


Q ss_pred             ceeeeeccc-cc--------------------------ccccccCchH---HHHHH--------------hhhhccCCCE
Q 023563          123 DSIVTHDGV-KL--------------------------PCCALTTLSS---FRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       123 ~~v~~~~~~-~~--------------------------~~~~~~~l~~---~~~~~--------------a~aL~~~p~l  158 (280)
                      +++++.... ..                          ..+...++..   +.++.              +++|+.+|++
T Consensus        82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l  161 (254)
T PRK10418         82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF  161 (254)
T ss_pred             EEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE
Confidence            333332110 00                          0011112221   11111              6789999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||++..      .+++.|++++++.|.|||++||+++++.+          +||++++|++ +++..|+++++.
T Consensus       162 LlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~----------~~d~v~~l~~G~i~~~~~~~~~~  229 (254)
T PRK10418        162 IIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVAR----------LADDVAVMSHGRIVEQGDVETLF  229 (254)
T ss_pred             EEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHH----------hCCEEEEEECCEEEEecCHHHHh
Confidence            9999997654      47888888876558999999999999876          9999999999 999999988876

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=214.25  Aligned_cols=166  Identities=15%  Similarity=0.085  Sum_probs=117.6

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------  116 (280)
                      ++|+++|++++|+++.+++|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+-....        
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~   80 (250)
T PRK14262          2 PIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLL-RSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT   80 (250)
T ss_pred             ceEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHH-HHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence            379999999999988999999999999999999999999999999 99999743      223332211100        


Q ss_pred             ccccccceeeeeccccc---------c------------------cccccCch----HHHHHH--------------hhh
Q 023563          117 DTRYGLDSIVTHDGVKL---------P------------------CCALTTLS----SFRQKF--------------GSD  151 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~~---------~------------------~~~~~~l~----~~~~~~--------------a~a  151 (280)
                      ..+..++++++......         .                  .+...++.    ...++.              +++
T Consensus        81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a  160 (250)
T PRK14262         81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA  160 (250)
T ss_pred             HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence            11222333333211000         0                  00001111    011111              678


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      ++.+|++||||||++..      .+++.|.++.+  ++|+|++||+++.+.+          +||++++|++ +++..|+
T Consensus       161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~  228 (250)
T PRK14262        161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIGQAIR----------IADYIAFMYRGELIEYGP  228 (250)
T ss_pred             HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEecC
Confidence            99999999999997654      47788888753  7899999999998876          9999999999 9998998


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      ++++.
T Consensus       229 ~~~~~  233 (250)
T PRK14262        229 TREIV  233 (250)
T ss_pred             HHHHH
Confidence            88775

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.95  E-value=1e-27  Score=204.67  Aligned_cols=150  Identities=22%  Similarity=0.252  Sum_probs=109.0

Q ss_pred             EEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------ccccccceee
Q 023563           54 SPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGLDSIV  126 (280)
Q Consensus        54 ~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~~~v~  126 (280)
                      +++|++++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-..+.      ..+..+++++
T Consensus         1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl-~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~   79 (180)
T cd03214           1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLL-KTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP   79 (180)
T ss_pred             CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence            478999999888899999999999999999999999999999 99999843 333343221111      0111233333


Q ss_pred             eecccccccccccCchHHH------------HH--HhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEE
Q 023563          127 THDGVKLPCCALTTLSSFR------------QK--FGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVI  186 (280)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~------------~~--~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tvi  186 (280)
                      +       .+...++.++.            .+  .+++++.+|++||||||+..      ..+.+.|.+++++.|.|+|
T Consensus        80 q-------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tii  152 (180)
T cd03214          80 Q-------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV  152 (180)
T ss_pred             H-------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence            2       11112222111            11  26899999999999999654      4578888888765489999


Q ss_pred             EEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          187 VAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       187 ivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      ++||+++++.+          +||++++|++ +++.
T Consensus       153 i~sh~~~~~~~----------~~d~~~~l~~g~i~~  178 (180)
T cd03214         153 MVLHDLNLAAR----------YADRVILLKDGRIVA  178 (180)
T ss_pred             EEeCCHHHHHH----------hCCEEEEEECCEEEe
Confidence            99999999876          9999999998 7654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.4e-27  Score=211.61  Aligned_cols=162  Identities=16%  Similarity=0.113  Sum_probs=110.3

Q ss_pred             ccEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc--------
Q 023563           51 SMVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD--------  117 (280)
Q Consensus        51 ~~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~--------  117 (280)
                      |+|+++||+++|++    +.+|+++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+......        
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~   82 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLL-HLLGGLDTPTSGDVIFNGQPMSKLSSAAKA   82 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence            47999999999964    5799999999999999999999999999999 99999832 1222221110000        


Q ss_pred             -c-ccccceeeeecccc---------------------------cccccccCchHHHHHH--------------hhhhcc
Q 023563          118 -T-RYGLDSIVTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYD  154 (280)
Q Consensus       118 -~-~~~~~~v~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~  154 (280)
                       . +..+++++|.....                           ...+...++.++.++.              +++++.
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~  162 (233)
T PRK11629         83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN  162 (233)
T ss_pred             HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence             0 01233333321100                           0001111222211111              568999


Q ss_pred             CCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          155 QVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       155 ~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      +|++||||||++.      ..++++|++++++.|+|||++|||++++..           +|++++|++ ++++.++
T Consensus       163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-----------~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        163 NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-----------MSRQLEMRDGRLTAELS  228 (233)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-----------hCEEEEEECCEEEEEec
Confidence            9999999999654      457888888876458999999999999874           579999998 8776544

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=215.30  Aligned_cols=165  Identities=13%  Similarity=0.079  Sum_probs=117.6

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------c
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------D  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------~  117 (280)
                      +|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....|.+.....        .
T Consensus         4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~   82 (258)
T PRK14241          4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVL-RTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA   82 (258)
T ss_pred             cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence            79999999999988999999999999999999999999999999 99999853      233443322110        0


Q ss_pred             cccccceeeeeccccc----------------------------ccccccCch----HHHHHH--------------hhh
Q 023563          118 TRYGLDSIVTHDGVKL----------------------------PCCALTTLS----SFRQKF--------------GSD  151 (280)
Q Consensus       118 ~~~~~~~v~~~~~~~~----------------------------~~~~~~~l~----~~~~~~--------------a~a  151 (280)
                      .+..++++++......                            ..+...++.    ...++.              +++
T Consensus        83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  162 (258)
T PRK14241         83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA  162 (258)
T ss_pred             HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence            1122333333211000                            000011111    111111              678


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee------c-e
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT------A-R  218 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~------~-~  218 (280)
                      ++.+|++||||||++..      .++++|+++++  ++|||++||+++++.+          +||++++|+      + +
T Consensus       163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~~~~~----------~~d~i~~l~~~~~~~~g~  230 (258)
T PRK14241        163 IAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNMQQAAR----------VSDQTAFFNLEATGKPGR  230 (258)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHH----------hCCEEEEEecccCCCCce
Confidence            99999999999997654      47888888853  6899999999999876          999999996      6 8


Q ss_pred             eccccCcceee
Q 023563          219 CEFCGKRAFFT  229 (280)
Q Consensus       219 i~~~g~~~~~~  229 (280)
                      +++.|+++++.
T Consensus       231 i~~~~~~~~~~  241 (258)
T PRK14241        231 LVEIDDTEKIF  241 (258)
T ss_pred             EEecCCHHHHH
Confidence            88888888775

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.95  E-value=6.4e-28  Score=210.27  Aligned_cols=152  Identities=25%  Similarity=0.290  Sum_probs=105.4

Q ss_pred             EEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------cccccccce
Q 023563           54 SPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDTRYGLDS  124 (280)
Q Consensus        54 ~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~~~~~~~  124 (280)
                      +++|++++|++  +.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-...      ...+..+.+
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLL-RLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL   79 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence            36899999987  7899999999999999999999999999999 99999732 22222211100      001122233


Q ss_pred             eeeeccc-ccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563          125 IVTHDGV-KLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGID  162 (280)
Q Consensus       125 v~~~~~~-~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD  162 (280)
                      +++.... ...                           .+...++....++.              ++||+.+|++||||
T Consensus        80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD  159 (211)
T cd03225          80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD  159 (211)
T ss_pred             EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            3332110 000                           01111222221111              57899999999999


Q ss_pred             CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ||++..      .+++.|++++++ |.|||++|||++++.+          +||++++|++
T Consensus       160 EPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~----------~~d~i~~l~~  209 (211)
T cd03225         160 EPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLE----------LADRVIVLED  209 (211)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence            997654      478888888876 9999999999999986          8999999975

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.95  E-value=1.8e-27  Score=209.96  Aligned_cols=158  Identities=14%  Similarity=0.085  Sum_probs=108.7

Q ss_pred             ccEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc--------
Q 023563           51 SMVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD--------  117 (280)
Q Consensus        51 ~~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~--------  117 (280)
                      ++|+++|++++|++    ..+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.....        
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~   83 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLL-AILAGLDDGSSGEVSLVGQPLHQMDEEARA   83 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence            58999999999975    3599999999999999999999999999999 99999832 2222221110000        


Q ss_pred             -c-ccccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhcc
Q 023563          118 -T-RYGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYD  154 (280)
Q Consensus       118 -~-~~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~  154 (280)
                       . +..++++++......                           ..+...++.+..++.              +++|+.
T Consensus        84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~  163 (228)
T PRK10584         84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG  163 (228)
T ss_pred             HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence             0 012233332211100                           001111222222111              568999


Q ss_pred             CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563          155 QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       155 ~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                      +|++||||||++.+      .++++|++++++.|.|||++|||++++.           .||++++|++ +++
T Consensus       164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-----------~~d~i~~l~~g~i~  225 (228)
T PRK10584        164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-----------RCDRRLRLVNGQLQ  225 (228)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-----------hCCEEEEEECCEEE
Confidence            99999999997654      4788888887655899999999999874           6999999998 664

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.3e-27  Score=217.14  Aligned_cols=166  Identities=16%  Similarity=0.173  Sum_probs=118.5

Q ss_pred             cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------ccccc
Q 023563           52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTRYG  121 (280)
Q Consensus        52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~~~  121 (280)
                      ||+++|++++|+ ++.+++|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....        ..+..
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (275)
T PRK13639          1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLF-LHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT   79 (275)
T ss_pred             CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence            588999999996 46799999999999999999999999999999 99999732 122222111000        01122


Q ss_pred             cceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563          122 LDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVI  159 (280)
Q Consensus       122 ~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lL  159 (280)
                      ++++++... ..+                           ..+...++..+.++.              |++++.+|++|
T Consensus        80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  159 (275)
T PRK13639         80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII  159 (275)
T ss_pred             eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            233333210 000                           011111222222111              57899999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||++..      .++++|.+++++ |.|||++|||++++.+          +||++++|++ ++++.|+++++.
T Consensus       160 llDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~  225 (275)
T PRK13639        160 VLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPV----------YADKVYVMSDGKIIKEGTPKEVF  225 (275)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHh
Confidence            999996644      588889888765 9999999999999976          8999999999 999999999876

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=2.8e-28  Score=207.63  Aligned_cols=178  Identities=21%  Similarity=0.219  Sum_probs=131.5

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC---------eeEEEecCCcccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG---------RNVAVIKSNKDTRYG  121 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g---------~~i~~~~~~~~~~~~  121 (280)
                      ++|+++||+++|++..+|+++||+|.+||.-+|||||||||||++ -+|.|.....         .++.-++.+...+.+
T Consensus         4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~m-D~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G   82 (249)
T COG4674           4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLM-DVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG   82 (249)
T ss_pred             ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeee-eeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence            479999999999999999999999999999999999999999999 9999864322         222222222223455


Q ss_pred             cceeeeeccccccc-----------------------------------ccccCchHHHHHH--------------hhhh
Q 023563          122 LDSIVTHDGVKLPC-----------------------------------CALTTLSSFRQKF--------------GSDA  152 (280)
Q Consensus       122 ~~~v~~~~~~~~~~-----------------------------------~~~~~l~~~~~~~--------------a~aL  152 (280)
                      ++.-||....+...                                   +...++.+.+++.              |+-+
T Consensus        83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll  162 (249)
T COG4674          83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL  162 (249)
T ss_pred             cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence            55545422211111                                   1111222222221              3347


Q ss_pred             ccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563          153 YDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR  225 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~  225 (280)
                      +++|++||+|||...      ...-++|++++.  ..+|++|.|||.++++          +|++|.+|+. .+.+.|+.
T Consensus       163 ~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~----------~A~~VTVlh~G~VL~EGsl  230 (249)
T COG4674         163 AQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVRE----------IADKVTVLHEGSVLAEGSL  230 (249)
T ss_pred             ccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHH----------hhheeEEEeccceeecccH
Confidence            899999999999443      246788889886  7899999999999997          9999999999 99999999


Q ss_pred             ceeeeeecCCCcEEEeCCc
Q 023563          226 AFFTLRKTEETKTELIGGS  244 (280)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~  244 (280)
                      +++.   .++.+.++|-|.
T Consensus       231 d~v~---~dp~ViEvYLGr  246 (249)
T COG4674         231 DEVQ---NDPKVIEVYLGR  246 (249)
T ss_pred             HHhh---cCcceEeeeccc
Confidence            9998   788888888553

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=5.6e-28  Score=219.80  Aligned_cols=167  Identities=16%  Similarity=0.109  Sum_probs=118.5

Q ss_pred             ccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------ccccc
Q 023563           51 SMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDTRY  120 (280)
Q Consensus        51 ~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~~~  120 (280)
                      ++|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+....      ...+.
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~   81 (277)
T PRK13642          3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTA-RLIDGLFEEFEGKVKIDGELLTAENVWNLRR   81 (277)
T ss_pred             ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCCEEEECCEECCcCCHHHHhc
Confidence            37999999999974   3599999999999999999999999999999 99999732 11222111100      00122


Q ss_pred             ccceeeeecc-cccc---------------------------cccccCchHHHHHH--------------hhhhccCCCE
Q 023563          121 GLDSIVTHDG-VKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       121 ~~~~v~~~~~-~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~l  158 (280)
                      .++++++... ....                           .+...++..+.++.              |++|+.+|++
T Consensus        82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l  161 (277)
T PRK13642         82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI  161 (277)
T ss_pred             ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            2333333211 0000                           01111222222211              6789999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||++..      .+++.|.+++++.|.|||++|||++++.           .||++++|++ +++..|+++++.
T Consensus       162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~~~  228 (277)
T PRK13642        162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-----------SSDRILVMKAGEIIKEAAPSELF  228 (277)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEeCCHHHHh
Confidence            9999997654      5888888888756999999999999985           6999999999 999999998876

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.95  E-value=1.4e-27  Score=217.01  Aligned_cols=167  Identities=16%  Similarity=0.108  Sum_probs=118.3

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---------CeeEEEecCCc------
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---------GRNVAVIKSNK------  116 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---------g~~i~~~~~~~------  116 (280)
                      ||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+...         ...+.+.....      
T Consensus         1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~   79 (272)
T PRK13547          1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLL-KALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP   79 (272)
T ss_pred             CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence            58999999999999999999999999999999999999999999 999997532         23333221110      


Q ss_pred             ccccccceeeeecccccc-------------------------------cccccCchHHHHHH--------------hhh
Q 023563          117 DTRYGLDSIVTHDGVKLP-------------------------------CCALTTLSSFRQKF--------------GSD  151 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~~~-------------------------------~~~~~~l~~~~~~~--------------a~a  151 (280)
                      ..+..+.++++.....+.                               .+...++..+.++.              +++
T Consensus        80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara  159 (272)
T PRK13547         80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV  159 (272)
T ss_pred             HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence            001112222221110000                               00011121111111              567


Q ss_pred             hc---------cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          152 AY---------DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       152 L~---------~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                      |+         .+|++||||||++..      .++++|+++.++.|.|||++|||++++.+          +||++++|+
T Consensus       160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~----------~~d~i~~l~  229 (272)
T PRK13547        160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAAR----------HADRIAMLA  229 (272)
T ss_pred             HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH----------hCCEEEEEE
Confidence            88         499999999997654      58888888876558999999999999876          999999999


Q ss_pred             c-eeccccCcceee
Q 023563          217 A-RCEFCGKRAFFT  229 (280)
Q Consensus       217 ~-~i~~~g~~~~~~  229 (280)
                      + +++..|+++++.
T Consensus       230 ~G~i~~~g~~~~~~  243 (272)
T PRK13547        230 DGAIVAHGAPADVL  243 (272)
T ss_pred             CCeEEEecCHHHHc
Confidence            9 999999988775

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=215.56  Aligned_cols=167  Identities=13%  Similarity=0.061  Sum_probs=118.7

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------  116 (280)
                      ..+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+.....       
T Consensus        11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~   89 (260)
T PRK10744         11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLL-RTFNRMYELYPEQRAEGEILLDGENILTPKQDI   89 (260)
T ss_pred             CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcccccCCCCCcceEEEECCEEccccccch
Confidence            3479999999999988899999999999999999999999999999 99999852      223332221110       


Q ss_pred             -ccccccceeeeeccccc---------------------------ccccccCc----hHHHHHH--------------hh
Q 023563          117 -DTRYGLDSIVTHDGVKL---------------------------PCCALTTL----SSFRQKF--------------GS  150 (280)
Q Consensus       117 -~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l----~~~~~~~--------------a~  150 (280)
                       ..+..++++++......                           ..+...++    ....++.              ++
T Consensus        90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar  169 (260)
T PRK10744         90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR  169 (260)
T ss_pred             HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence             01222333333211000                           00011111    0111111              57


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +|+.+|++||||||++..      .+++.|+++. + +.|||++||+++++.+          +||++++|++ +++..|
T Consensus       170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g  237 (260)
T PRK10744        170 GIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAAR----------CSDYTAFMYLGELIEFG  237 (260)
T ss_pred             HHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeC
Confidence            899999999999997644      4788888885 3 7899999999999876          9999999999 999888


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       238 ~~~~~~  243 (260)
T PRK10744        238 NTDTIF  243 (260)
T ss_pred             CHHHHH
Confidence            888775

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.95  E-value=3.6e-27  Score=207.48  Aligned_cols=162  Identities=16%  Similarity=0.180  Sum_probs=114.0

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCe---------------eEEEecCCc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGR---------------NVAVIKSNK  116 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~---------------~i~~~~~~~  116 (280)
                      |+++|++++|+++.+|+++||+|++||+++|+||||||||||+ ++|+|+.. ...               .+++++|..
T Consensus         1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~   79 (223)
T TIGR03740         1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLL-KMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP   79 (223)
T ss_pred             CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence            4789999999988999999999999999999999999999999 99999732 112               233333332


Q ss_pred             cccc--ccceeee------e--cccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH-----
Q 023563          117 DTRY--GLDSIVT------H--DGVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF-----  167 (280)
Q Consensus       117 ~~~~--~~~~v~~------~--~~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~-----  167 (280)
                      ....  .+...+.      .  .......+...++....++.              +++++.+|++||||||++.     
T Consensus        80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~  159 (223)
T TIGR03740        80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG  159 (223)
T ss_pred             CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence            1100  0000000      0  00000111122333222221              5789999999999999654     


Q ss_pred             -HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          168 -EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       168 -~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                       ..++++|++++++ |.|||++|||++++.+          +||++++|++ +++..|++.
T Consensus       160 ~~~l~~~L~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~g~i~~~~~~~  209 (223)
T TIGR03740       160 IQELRELIRSFPEQ-GITVILSSHILSEVQQ----------LADHIGIISEGVLGYQGKIN  209 (223)
T ss_pred             HHHHHHHHHHHHHC-CCEEEEEcCCHHHHHH----------hcCEEEEEeCCEEEEecChh
Confidence             4578888888765 9999999999999976          9999999999 888877764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.4e-27  Score=213.78  Aligned_cols=167  Identities=14%  Similarity=0.082  Sum_probs=118.3

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------  116 (280)
                      .|+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+-....       
T Consensus         2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (251)
T PRK14270          2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFL-RCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV   80 (251)
T ss_pred             ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHHhccCcccCCCCccEEEECCEecccccccH
Confidence            4689999999999988899999999999999999999999999999 99999742      122222211100       


Q ss_pred             -ccccccceeeeecccc---------c------------------ccccccCc----hHHHHHH--------------hh
Q 023563          117 -DTRYGLDSIVTHDGVK---------L------------------PCCALTTL----SSFRQKF--------------GS  150 (280)
Q Consensus       117 -~~~~~~~~v~~~~~~~---------~------------------~~~~~~~l----~~~~~~~--------------a~  150 (280)
                       ..+..++++++.....         +                  ..+...++    ....++.              ++
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar  160 (251)
T PRK14270         81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIAR  160 (251)
T ss_pred             HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence             0112233333321100         0                  00011111    0111111              56


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +++.+|++||||||++..      .+++.|+++.+  +.|||++||+++++.+          +||++++|++ +++..|
T Consensus       161 al~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~----------~~d~v~~l~~G~i~~~~  228 (251)
T PRK14270        161 TIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASR----------VSDYTAFFLMGDLIEFN  228 (251)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHH----------hcCEEEEEECCeEEEeC
Confidence            899999999999997654      57888888865  6899999999999876          9999999999 999999


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       229 ~~~~~~  234 (251)
T PRK14270        229 KTEKIF  234 (251)
T ss_pred             CHHHHh
Confidence            988876

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.6e-27  Score=213.35  Aligned_cols=166  Identities=14%  Similarity=0.091  Sum_probs=118.1

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------  116 (280)
                      ++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+ ++|+|+..      ....+.+.....        
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~   81 (251)
T PRK14251          3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFL-RCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV   81 (251)
T ss_pred             ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence            479999999999988999999999999999999999999999999 99999853      233333221110        


Q ss_pred             ccccccceeeeecccc---------------------------cccccccCch----HHHHHH--------------hhh
Q 023563          117 DTRYGLDSIVTHDGVK---------------------------LPCCALTTLS----SFRQKF--------------GSD  151 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~---------------------------~~~~~~~~l~----~~~~~~--------------a~a  151 (280)
                      ..+..++++++.....                           ...+...++.    ...++.              +++
T Consensus        82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara  161 (251)
T PRK14251         82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA  161 (251)
T ss_pred             HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence            0122233333321110                           0000011110    111111              578


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      ++.+|++||||||++..      .+++.|+++.+  +.|||++||+++++.+          +||++++|++ +++..|+
T Consensus       162 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~~~----------~~d~i~~l~~G~i~~~~~  229 (251)
T PRK14251        162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQQAGR----------ISDQTAFLMNGDLIEAGP  229 (251)
T ss_pred             HhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHh----------hcCEEEEEECCEEEEeCC
Confidence            99999999999997543      57888888753  7899999999999876          8999999999 9888888


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      ++++.
T Consensus       230 ~~~~~  234 (251)
T PRK14251        230 TEEMF  234 (251)
T ss_pred             HHHHH
Confidence            87765

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.4e-27  Score=211.51  Aligned_cols=165  Identities=13%  Similarity=0.141  Sum_probs=114.9

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe----------eEEEec
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR----------NVAVIK  113 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~----------~i~~~~  113 (280)
                      ||+++||+++|++..  .++||+|.+|++++|+||||||||||+ ++|+|+..        +|.          .+++++
T Consensus         1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~   77 (232)
T PRK10771          1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLL-NLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF   77 (232)
T ss_pred             CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence            589999999998644  399999999999999999999999999 99999732        221          233444


Q ss_pred             CCccccc--ccceeee---ecc---------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563          114 SNKDTRY--GLDSIVT---HDG---------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ  165 (280)
Q Consensus       114 ~~~~~~~--~~~~v~~---~~~---------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~  165 (280)
                      |......  .+...+.   ...         .....+...++..+.++.              +++++.+|++||||||+
T Consensus        78 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~  157 (232)
T PRK10771         78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPF  157 (232)
T ss_pred             cccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            3321100  0000000   000         000011122232222211              56899999999999997


Q ss_pred             cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ...      .+.++|++++++.|.|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       158 ~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~----------~~d~i~~l~~g~i~~~g~~~~~~  218 (232)
T PRK10771        158 SALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAAR----------IAPRSLVVADGRIAWDGPTDELL  218 (232)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHH
Confidence            654      47788888876558999999999999876          9999999999 998888887776

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.95  E-value=9.1e-28  Score=232.50  Aligned_cols=175  Identities=15%  Similarity=0.142  Sum_probs=127.4

Q ss_pred             ccEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----------------------
Q 023563           51 SMVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----------------------  104 (280)
Q Consensus        51 ~~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----------------------  104 (280)
                      ++|+++||++.|..    ..+++||||+|.+||++||+|.|||||||++ +.+.|+..                      
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a-~~i~gll~~~~~~~~G~I~~~g~dl~~l~~   82 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLA-LALMGLLPEGGRITSGEVILDGRDLLGLSE   82 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHH-HHHhccCCCCCcccceEEEECCcchhcCCH
Confidence            48999999999953    2699999999999999999999999999999 88888732                      


Q ss_pred             ------CCeeEEEecCCcccccc----cceee----e-eccc--------ccccccccCchHHHHH--H-----------
Q 023563          105 ------KGRNVAVIKSNKDTRYG----LDSIV----T-HDGV--------KLPCCALTTLSSFRQK--F-----------  148 (280)
Q Consensus       105 ------~g~~i~~~~~~~~~~~~----~~~v~----~-~~~~--------~~~~~~~~~l~~~~~~--~-----------  148 (280)
                            .|+.+++++|++....+    ++..+    . +...        ..+.+...++.+-..+  +           
T Consensus        83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR  162 (539)
T COG1123          83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR  162 (539)
T ss_pred             HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence                  23344444444322110    00000    0 0000        0011122222211111  2           


Q ss_pred             ---hhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563          149 ---GSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R  218 (280)
Q Consensus       149 ---a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~  218 (280)
                         |+||+.+|++||+||||++      .+++++|+++.++.|.++|++|||+..+.+          +||||++|.+ +
T Consensus       163 v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~----------~aDrv~Vm~~G~  232 (539)
T COG1123         163 VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAE----------LADRVVVMYKGE  232 (539)
T ss_pred             HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHH----------hcCeEEEEECCE
Confidence               6789999999999999665      469999999999899999999999999998          9999999999 9


Q ss_pred             eccccCcceeeeeecCCC
Q 023563          219 CEFCGKRAFFTLRKTEET  236 (280)
Q Consensus       219 i~~~g~~~~~~~~~~~~~  236 (280)
                      ++..|++++++.++..+.
T Consensus       233 iVE~G~~~~i~~~p~hpY  250 (539)
T COG1123         233 IVETGPTEEILSNPQHPY  250 (539)
T ss_pred             EEEecCHHHHHhccCCcc
Confidence            999999999986655443

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.9e-27  Score=212.98  Aligned_cols=167  Identities=14%  Similarity=0.105  Sum_probs=117.0

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C----CeeEEEecCCc-------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K----GRNVAVIKSNK-------  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~----g~~i~~~~~~~-------  116 (280)
                      .+||+++|++++|+++.+|+++||+|.+||+++|+||||||||||+ ++|+|+..  .    ...|.+-....       
T Consensus         3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14255          3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYL-RTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV   81 (252)
T ss_pred             cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence            3589999999999988999999999999999999999999999999 99999632  1    12222111100       


Q ss_pred             -ccccccceeeeeccccc-----------------------c----cccccCc----hHHHHHH--------------hh
Q 023563          117 -DTRYGLDSIVTHDGVKL-----------------------P----CCALTTL----SSFRQKF--------------GS  150 (280)
Q Consensus       117 -~~~~~~~~v~~~~~~~~-----------------------~----~~~~~~l----~~~~~~~--------------a~  150 (280)
                       ..+..+++++|......                       .    .+...++    ....++.              ++
T Consensus        82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar  161 (252)
T PRK14255         82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR  161 (252)
T ss_pred             HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence             01112333333211000                       0    0000011    0111111              67


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +++.+|++||||||++.+      .+.++|+++.+  +.|+|++||+++++.+          +||+|++|++ +++..|
T Consensus       162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~----------~~d~i~~l~~G~i~~~~  229 (252)
T PRK14255        162 VLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASR----------ISDKTAFFLTGNLIEFA  229 (252)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEeC
Confidence            899999999999997644      57888888864  5899999999999876          9999999999 999998


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      ++.++.
T Consensus       230 ~~~~~~  235 (252)
T PRK14255        230 DTKQMF  235 (252)
T ss_pred             CHHHHh
Confidence            888776

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.95  E-value=9.7e-28  Score=234.09  Aligned_cols=166  Identities=13%  Similarity=0.058  Sum_probs=120.1

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------ccccccce
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGLDS  124 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~~~  124 (280)
                      ||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....      ..+..+++
T Consensus         3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~   81 (490)
T PRK10938          3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALA-RALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD   81 (490)
T ss_pred             eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence            69999999999988899999999999999999999999999999 99999742 222332211110      00111223


Q ss_pred             eeeeccc---------------------------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563          125 IVTHDGV---------------------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDE  163 (280)
Q Consensus       125 v~~~~~~---------------------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE  163 (280)
                      ++|....                           ....+...++.++.++.              |++|+.+|++|||||
T Consensus        82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE  161 (490)
T PRK10938         82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE  161 (490)
T ss_pred             eccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            3321110                           00011122232222221              568999999999999


Q ss_pred             cccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          164 AQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       164 P~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |++.+      .++++|++++++ |.|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       162 Pt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~----------~~d~v~~l~~G~i~~~~~~~~~~  223 (490)
T PRK10938        162 PFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPD----------FVQFAGVLADCTLAETGEREEIL  223 (490)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHh----------hCCEEEEEECCEEEEeCCHHHHh
Confidence            97654      588899998775 9999999999999986          9999999999 999999887765

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.95  E-value=7.5e-28  Score=203.08  Aligned_cols=163  Identities=19%  Similarity=0.245  Sum_probs=127.2

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~~  123 (280)
                      ||.+++|.++|+..+.  .++++|+.||+++|+||||||||||+ ++|+|+..        +|.+.+..+|   ...+++
T Consensus         1 ~l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLL-nLIAGF~~P~~G~i~i~g~d~t~~~P---~~RPVS   74 (231)
T COG3840           1 MLALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLL-NLIAGFETPASGEILINGVDHTASPP---AERPVS   74 (231)
T ss_pred             CccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHH-HHHHhccCCCCceEEEcCeecCcCCc---ccCChh
Confidence            4788999999998664  67899999999999999999999999 99999843        3444332222   245566


Q ss_pred             eeeeeccccccc----------------------------ccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563          124 SIVTHDGVKLPC----------------------------CALTTLSSFRQKF--------------GSDAYDQVDVIGI  161 (280)
Q Consensus       124 ~v~~~~~~~~~~----------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lLlL  161 (280)
                      .+||..++ +..                            ...+++..+.++.              ||+|+.+-+||||
T Consensus        75 mlFQEnNL-FaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLL  153 (231)
T COG3840          75 MLFQENNL-FAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLL  153 (231)
T ss_pred             hhhhcccc-chhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEe
Confidence            66654332 221                            1123444444433              6789999999999


Q ss_pred             eCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563          162 DEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       162 DEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~  231 (280)
                      |||.+.      .+++.++.+++++++.|++||||.++.+.+          ++|+++++++ ++.+.|+.++++.+
T Consensus       154 DEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~----------ia~~~~fl~~Gri~~~g~~~~~~~~  220 (231)
T COG3840         154 DEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAAR----------IADRVVFLDNGRIAAQGSTQELLSG  220 (231)
T ss_pred             cCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHH----------hhhceEEEeCCEEEeeccHHHHhcc
Confidence            999664      468999999999999999999999999997          9999999999 99999999988743

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.1e-27  Score=214.85  Aligned_cols=167  Identities=13%  Similarity=0.059  Sum_probs=119.4

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------  116 (280)
                      .++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+-....       
T Consensus        18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   96 (267)
T PRK14237         18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYL-RSLNRMNDTIDIARVTGQILYRGIDINRKEINV   96 (267)
T ss_pred             CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence            3489999999999988999999999999999999999999999999 99999852      233332211110       


Q ss_pred             -ccccccceeeeeccccc---------c------------------cccccCch----HHHHHH--------------hh
Q 023563          117 -DTRYGLDSIVTHDGVKL---------P------------------CCALTTLS----SFRQKF--------------GS  150 (280)
Q Consensus       117 -~~~~~~~~v~~~~~~~~---------~------------------~~~~~~l~----~~~~~~--------------a~  150 (280)
                       ..+..++++++......         .                  .+...++.    ...++.              ++
T Consensus        97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lar  176 (267)
T PRK14237         97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIAR  176 (267)
T ss_pred             HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHH
Confidence             01223334443211100         0                  00011110    111111              67


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +++.+|++||||||++..      .+.++|+++. + +.|||++||+++++.+          +||++++|++ +++..|
T Consensus       177 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~----------~~d~i~~l~~G~i~~~g  244 (267)
T PRK14237        177 AIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAAR----------ASDYTAFFYLGDLIEYD  244 (267)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHH----------hcCEEEEEECCEEEEeC
Confidence            899999999999997654      4778888885 3 7899999999999876          9999999999 999999


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       245 ~~~~~~  250 (267)
T PRK14237        245 KTRNIF  250 (267)
T ss_pred             CHHHHh
Confidence            988876

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.95  E-value=2e-27  Score=212.60  Aligned_cols=165  Identities=15%  Similarity=0.118  Sum_probs=114.4

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc---hhCCeeEEEecCC-------ccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE---TQKGRNVAVIKSN-------KDTRY  120 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl---~~~g~~i~~~~~~-------~~~~~  120 (280)
                      ++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+   ......+.+-...       ...+.
T Consensus         6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   84 (252)
T CHL00131          6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLS-KVIAGHPAYKILEGDILFKGESILDLEPEERAHL   84 (252)
T ss_pred             ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHH-HHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence            479999999999988899999999999999999999999999999 999996   2222222211100       00000


Q ss_pred             ccceeeeeccc----------------------------------ccccccccCch-HHH-------------HH--Hhh
Q 023563          121 GLDSIVTHDGV----------------------------------KLPCCALTTLS-SFR-------------QK--FGS  150 (280)
Q Consensus       121 ~~~~v~~~~~~----------------------------------~~~~~~~~~l~-~~~-------------~~--~a~  150 (280)
                      .+.++++....                                  ....+...++. ...             .+  .|+
T Consensus        85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~  164 (252)
T CHL00131         85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ  164 (252)
T ss_pred             eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence            11122211000                                  00001111111 010             11  167


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc-cceEEEeec-eeccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL-ADSVTKLTA-RCEFC  222 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~-aD~i~~L~~-~i~~~  222 (280)
                      +|+.+|++||||||++..      .++++|++++++ |.|||++|||++++.+          + ||++++|++ +++..
T Consensus       165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~~tH~~~~~~~----------~~~d~i~~l~~G~i~~~  233 (252)
T CHL00131        165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTS-ENSIILITHYQRLLDY----------IKPDYVHVMQNGKIIKT  233 (252)
T ss_pred             HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHh----------hhCCEEEEEeCCEEEEe
Confidence            899999999999997654      478888888764 9999999999999875          6 899999999 99888


Q ss_pred             cCcce
Q 023563          223 GKRAF  227 (280)
Q Consensus       223 g~~~~  227 (280)
                      |+++.
T Consensus       234 ~~~~~  238 (252)
T CHL00131        234 GDAEL  238 (252)
T ss_pred             cChhh
Confidence            88873

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.95  E-value=3e-27  Score=206.15  Aligned_cols=153  Identities=18%  Similarity=0.214  Sum_probs=107.3

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------ccccccc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTRYGLD  123 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~~~~~  123 (280)
                      |+++|++++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-....        ..+..+.
T Consensus         1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (213)
T cd03262           1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLL-RCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG   79 (213)
T ss_pred             CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence            4789999999988999999999999999999999999999999 99999832 222222111100        0112233


Q ss_pred             eeeeeccccc----------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563          124 SIVTHDGVKL----------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGI  161 (280)
Q Consensus       124 ~v~~~~~~~~----------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL  161 (280)
                      ++++......                            ..+...++....++.              +++++.+|++|||
T Consensus        80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  159 (213)
T cd03262          80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF  159 (213)
T ss_pred             EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence            3333211100                            001111222221111              5689999999999


Q ss_pred             eCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          162 DEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       162 DEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      |||++.      ..+.+.|++++++ |+|||++|||++++.+          +||++++|++
T Consensus       160 DEP~~~LD~~~~~~l~~~l~~~~~~-~~tvi~~sh~~~~~~~----------~~d~i~~l~~  210 (213)
T cd03262         160 DEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFARE----------VADRVIFMDD  210 (213)
T ss_pred             eCCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence            999654      4578889988875 9999999999999976          9999999987

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.95  E-value=1.1e-27  Score=208.02  Aligned_cols=161  Identities=16%  Similarity=0.178  Sum_probs=115.1

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEecCCcc-------ccccc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVIKSNKD-------TRYGL  122 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~~~~~~-------~~~~~  122 (280)
                      |+++|++++|+++.+++|+||+|.+||+++|+||||||||||+ ++|+|+.   .....+.+......       .+..+
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (200)
T cd03217           1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLA-KTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI   79 (200)
T ss_pred             CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHH-HHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence            4689999999988999999999999999999999999999999 9999972   33344443222110       12224


Q ss_pred             ceeeeecccccccccc--------cCchHH-HH--HHhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEE
Q 023563          123 DSIVTHDGVKLPCCAL--------TTLSSF-RQ--KFGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTV  185 (280)
Q Consensus       123 ~~v~~~~~~~~~~~~~--------~~l~~~-~~--~~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tv  185 (280)
                      .++++... .++....        ..++.= ..  ..+++++.+|++||||||++.      ..+++.|++++++ |.||
T Consensus        80 ~~v~q~~~-~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~-~~ti  157 (200)
T cd03217          80 FLAFQYPP-EIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSV  157 (200)
T ss_pred             EEeecChh-hccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEE
Confidence            44544322 1211111        112111 11  127899999999999999654      4588888888765 8999


Q ss_pred             EEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563          186 IVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR  225 (280)
Q Consensus       186 iivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~  225 (280)
                      |++||+++++.+         -+||++++|++ ++++.|+.
T Consensus       158 ii~sh~~~~~~~---------~~~d~i~~l~~G~i~~~~~~  189 (200)
T cd03217         158 LIITHYQRLLDY---------IKPDRVHVLYDGRIVKSGDK  189 (200)
T ss_pred             EEEecCHHHHHH---------hhCCEEEEEECCEEEEEccH
Confidence            999999998853         04999999999 88877733

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.95  E-value=1.3e-27  Score=202.83  Aligned_cols=151  Identities=21%  Similarity=0.206  Sum_probs=107.9

Q ss_pred             EEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------cccccccc
Q 023563           53 VSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDTRYGLD  123 (280)
Q Consensus        53 l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~~~~~~  123 (280)
                      |+++|++++|++  +.+++++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...      ...+..+.
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLA-RLILGLLRPTSGRVRLDGADISQWDPNELGDHVG   79 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence            478999999975  5699999999999999999999999999999 99999843 22233221110      01123344


Q ss_pred             eeeeecccccccccccC-ch-HHHHH--HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechh
Q 023563          124 SIVTHDGVKLPCCALTT-LS-SFRQK--FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGD  193 (280)
Q Consensus       124 ~v~~~~~~~~~~~~~~~-l~-~~~~~--~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~  193 (280)
                      ++++... .++.....+ ++ ....+  .+++++.+|++||||||++..      .+++.|++++++ |+|+|++|||++
T Consensus        80 ~~~q~~~-~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~  157 (173)
T cd03246          80 YLPQDDE-LFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAA-GATRIVIAHRPE  157 (173)
T ss_pred             EECCCCc-cccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence            4544332 222211222 21 11122  278999999999999997654      578888888765 999999999999


Q ss_pred             HhhhccCCccccccccceEEEeec
Q 023563          194 YLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       194 ~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ++.           +||++++|++
T Consensus       158 ~~~-----------~~d~v~~l~~  170 (173)
T cd03246         158 TLA-----------SADRILVLED  170 (173)
T ss_pred             HHH-----------hCCEEEEEEC
Confidence            874           7999999987

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.2e-27  Score=216.86  Aligned_cols=168  Identities=18%  Similarity=0.157  Sum_probs=117.7

Q ss_pred             CccEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------ccccc
Q 023563           50 HSMVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDTRY  120 (280)
Q Consensus        50 ~~~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~~~  120 (280)
                      .++|+++|++++|+  ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...      ...+.
T Consensus         5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   83 (271)
T PRK13632          5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTIS-KILTGLLKPQSGEIKIDGITISKENLKEIRK   83 (271)
T ss_pred             ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEecCcCCHHHHhc
Confidence            35899999999995  46799999999999999999999999999999 99999842 12222111100      01112


Q ss_pred             ccceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCE
Q 023563          121 GLDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       121 ~~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~l  158 (280)
                      .++++++... ...                           ..+...++..+.++.              ++||+.+|++
T Consensus        84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l  163 (271)
T PRK13632         84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI  163 (271)
T ss_pred             ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            2333333211 000                           001111222222111              5789999999


Q ss_pred             EEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||++.      ..++++|++++++.+.|||++||+++++.           .||++++|++ +++..|+++++.
T Consensus       164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~~~~  230 (271)
T PRK13632        164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-----------LADKVIVFSEGKLIAQGKPKEIL  230 (271)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-----------hCCEEEEEECCEEEEecCHHHHh
Confidence            999999654      45888999887653599999999999874           7999999999 988889888776

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.8e-27  Score=212.66  Aligned_cols=165  Identities=13%  Similarity=0.100  Sum_probs=116.6

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCC-------ccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSN-------KDT  118 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~-------~~~  118 (280)
                      +|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+...      ...+.+-...       ...
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~   81 (249)
T PRK14253          3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLL-RCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL   81 (249)
T ss_pred             eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHH-HHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence            68999999999988999999999999999999999999999999 999997431      2222221100       011


Q ss_pred             ccccceeeeeccccc---------c------------------cccccCch----HHHHH--------------Hhhhhc
Q 023563          119 RYGLDSIVTHDGVKL---------P------------------CCALTTLS----SFRQK--------------FGSDAY  153 (280)
Q Consensus       119 ~~~~~~v~~~~~~~~---------~------------------~~~~~~l~----~~~~~--------------~a~aL~  153 (280)
                      +..++++++......         .                  .+...++.    ...++              .+++|+
T Consensus        82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  161 (249)
T PRK14253         82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA  161 (249)
T ss_pred             HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence            222333333211000         0                  00001110    11111              167899


Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|++||||||++..      .++++|+++++  +.|||++||+++++.+          +||++++|++ +++..|+++
T Consensus       162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~----------~~d~i~~l~~G~i~~~g~~~  229 (249)
T PRK14253        162 MEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARR----------ISDRTAFFLMGELVEHDDTQ  229 (249)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHH----------hCCEEEEEECCEEEEeCCHH
Confidence            999999999997644      47888888864  6899999999999886          9999999999 998888887


Q ss_pred             eee
Q 023563          227 FFT  229 (280)
Q Consensus       227 ~~~  229 (280)
                      ++.
T Consensus       230 ~~~  232 (249)
T PRK14253        230 VIF  232 (249)
T ss_pred             HHH
Confidence            765

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=215.38  Aligned_cols=166  Identities=14%  Similarity=0.078  Sum_probs=117.7

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------  116 (280)
                      ++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+.....        
T Consensus        19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~   97 (274)
T PRK14265         19 SVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLL-RCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV   97 (274)
T ss_pred             ceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHhcccccccCCCcCceEEECCEecccccchhH
Confidence            389999999999988899999999999999999999999999999 99999742      122332211110        


Q ss_pred             ccccccceeeeeccccc-------------------------ccccccCc----hHHHHHH--------------hhhhc
Q 023563          117 DTRYGLDSIVTHDGVKL-------------------------PCCALTTL----SSFRQKF--------------GSDAY  153 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~~-------------------------~~~~~~~l----~~~~~~~--------------a~aL~  153 (280)
                      ..+..+++++++.....                         ..+...++    .+..++.              |+||+
T Consensus        98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~  177 (274)
T PRK14265         98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA  177 (274)
T ss_pred             HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            11222333333211100                         00000111    0111111              67899


Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee---------c-
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT---------A-  217 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~---------~-  217 (280)
                      .+|++||||||++.+      .+.++|.++++  +.|||++|||++++.+          +||++++|+         + 
T Consensus       178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~----------~~d~i~~l~~~~~~~~~~~G  245 (274)
T PRK14265        178 MKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQQASR----------VADWTAFFNTEIDEYGKRRG  245 (274)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH----------hCCEEEEEecccccccccCc
Confidence            999999999997654      47888888864  6899999999999986          999999997         6 


Q ss_pred             eeccccCcceee
Q 023563          218 RCEFCGKRAFFT  229 (280)
Q Consensus       218 ~i~~~g~~~~~~  229 (280)
                      +++..|+++++.
T Consensus       246 ~~~~~g~~~~~~  257 (274)
T PRK14265        246 KLVEFSPTEQMF  257 (274)
T ss_pred             eEEEeCCHHHHH
Confidence            888888888876

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.5e-27  Score=213.96  Aligned_cols=169  Identities=12%  Similarity=0.085  Sum_probs=119.4

Q ss_pred             CCCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-----
Q 023563           48 FIHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-----  116 (280)
Q Consensus        48 ~~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-----  116 (280)
                      ...++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+.....     
T Consensus        21 ~~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl-~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~   99 (272)
T PRK14236         21 DEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLL-RCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV   99 (272)
T ss_pred             CCCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHHhcCCCccCCCCceEEEECCEECccccc
Confidence            345589999999999988899999999999999999999999999999 99999843      223332211110     


Q ss_pred             ---ccccccceeeeeccccc---------------------------ccccccCch----HHHHHH--------------
Q 023563          117 ---DTRYGLDSIVTHDGVKL---------------------------PCCALTTLS----SFRQKF--------------  148 (280)
Q Consensus       117 ---~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~----~~~~~~--------------  148 (280)
                         ..+..+.++++......                           ..+...++.    ...++.              
T Consensus       100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l  179 (272)
T PRK14236        100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVI  179 (272)
T ss_pred             CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHH
Confidence               01222333333211000                           000011111    011111              


Q ss_pred             hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      |++++.+|++||||||+...      .+++.|+++++  +.|||++||+++++.+          +||++++|++ +++.
T Consensus       180 aral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~----------~~d~i~~l~~G~i~~  247 (272)
T PRK14236        180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAAR----------VSDYTAFMYMGKLVE  247 (272)
T ss_pred             HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHh----------hCCEEEEEECCEEEe
Confidence            57899999999999996644      47888888864  6899999999999876          9999999999 9988


Q ss_pred             ccCcceee
Q 023563          222 CGKRAFFT  229 (280)
Q Consensus       222 ~g~~~~~~  229 (280)
                      .|+++++.
T Consensus       248 ~g~~~~~~  255 (272)
T PRK14236        248 YGDTDTLF  255 (272)
T ss_pred             cCCHHHHh
Confidence            89888775

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.2e-27  Score=212.59  Aligned_cols=167  Identities=16%  Similarity=0.110  Sum_probs=118.4

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc-------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK-------  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~-------  116 (280)
                      +++|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+ ++|+|+...      ...+.+-....       
T Consensus         2 ~~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~   80 (251)
T PRK14249          2 DPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLL-RALNRMNDIVSGARLEGAVLLDNENIYSPNLDV   80 (251)
T ss_pred             CceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCccccCCcccEEEECCEEccccccCh
Confidence            4579999999999988899999999999999999999999999999 999997432      12222211100       


Q ss_pred             -ccccccceeeeeccccc---------c------------------cccccCch----HHHHHH--------------hh
Q 023563          117 -DTRYGLDSIVTHDGVKL---------P------------------CCALTTLS----SFRQKF--------------GS  150 (280)
Q Consensus       117 -~~~~~~~~v~~~~~~~~---------~------------------~~~~~~l~----~~~~~~--------------a~  150 (280)
                       ..+..++++++......         .                  .+...++.    .+.++.              ++
T Consensus        81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar  160 (251)
T PRK14249         81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIAR  160 (251)
T ss_pred             HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence             11222333333211100         0                  00001111    111111              57


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +|+.+|++||||||++..      .+.++|+++. + +.|||++||+++++.+          +||++++|++ +++..|
T Consensus       161 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~----------~~d~i~~l~~G~i~~~~  228 (251)
T PRK14249        161 VLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAAR----------ASDWTGFLLTGDLVEYG  228 (251)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHh----------hCCEEEEEeCCeEEEeC
Confidence            899999999999997654      4778888874 4 8999999999999986          8999999999 998889


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       229 ~~~~~~  234 (251)
T PRK14249        229 RTGEIF  234 (251)
T ss_pred             CHHHHH
Confidence            888876

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.7e-27  Score=211.21  Aligned_cols=166  Identities=15%  Similarity=0.148  Sum_probs=118.1

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------  116 (280)
                      ..|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+.....        
T Consensus         3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~   81 (252)
T PRK14256          3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVL-RSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV   81 (252)
T ss_pred             cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence            368999999999988899999999999999999999999999999 99999852      123333221110        


Q ss_pred             ccccccceeeeeccccc----------------------------ccccccCchH----HHHH--------------Hhh
Q 023563          117 DTRYGLDSIVTHDGVKL----------------------------PCCALTTLSS----FRQK--------------FGS  150 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~~----------------------------~~~~~~~l~~----~~~~--------------~a~  150 (280)
                      ..+..+.++++......                            ..+...++..    ..++              .++
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar  161 (252)
T PRK14256         82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR  161 (252)
T ss_pred             HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence            01122333333211000                            0000111111    1101              056


Q ss_pred             hhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +++.+|++||||||++.      ..+++.|+++.+  ++|||++||+++++.+          +||++++|++ +++..|
T Consensus       162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~~~~  229 (252)
T PRK14256        162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAAR----------VSDYTAFFYMGDLVECG  229 (252)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHh----------hCCEEEEEECCEEEEeC
Confidence            89999999999999654      457888888864  6899999999999876          9999999999 998899


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       230 ~~~~~~  235 (252)
T PRK14256        230 ETKKIF  235 (252)
T ss_pred             CHHHHH
Confidence            988876

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.95  E-value=2.1e-27  Score=210.45  Aligned_cols=166  Identities=14%  Similarity=0.120  Sum_probs=117.2

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc----ccccccceeee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK----DTRYGLDSIVT  127 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~----~~~~~~~~v~~  127 (280)
                      |+++|++++|+++.+++++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....    ..+..++++++
T Consensus         1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   79 (232)
T cd03300           1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLL-RLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ   79 (232)
T ss_pred             CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence            4689999999988999999999999999999999999999999 99999843 222332211100    01112223332


Q ss_pred             eccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563          128 HDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF  166 (280)
Q Consensus       128 ~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~  166 (280)
                      ......                           ..+...++..+.++.              +++++.+|++||||||+.
T Consensus        80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~  159 (232)
T cd03300          80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG  159 (232)
T ss_pred             ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            211100                           001111222211111              578999999999999966


Q ss_pred             HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ..      .+++.|++++++.|.|||++||+++++.+          +||++++|++ +++..|+++++.
T Consensus       160 gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~----------~~d~i~~l~~G~~~~~~~~~~~~  219 (232)
T cd03300         160 ALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALT----------MSDRIAVMNKGKIQQIGTPEEIY  219 (232)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hcCEEEEEECCEEEecCCHHHHH
Confidence            54      58888888876558999999999999876          9999999999 888888776665

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.9e-27  Score=211.95  Aligned_cols=167  Identities=14%  Similarity=0.095  Sum_probs=118.0

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCC--------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSN--------  115 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~--------  115 (280)
                      .++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+....        
T Consensus         4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   82 (253)
T PRK14261          4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLL-RCFNRMNDLIPGCRITGDILYNGENIMDSGADV   82 (253)
T ss_pred             cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHH-HHHhccccCCCCCCcceEEEECCEEccccccch
Confidence            3589999999999998999999999999999999999999999999 99998732      12223221111        


Q ss_pred             cccccccceeeeecccc---------cc------------------cccccCch----HHHHHH--------------hh
Q 023563          116 KDTRYGLDSIVTHDGVK---------LP------------------CCALTTLS----SFRQKF--------------GS  150 (280)
Q Consensus       116 ~~~~~~~~~v~~~~~~~---------~~------------------~~~~~~l~----~~~~~~--------------a~  150 (280)
                      ...+..++++++.....         +.                  .+...++.    ...++.              ++
T Consensus        83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar  162 (253)
T PRK14261         83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR  162 (253)
T ss_pred             hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence            01122233333322111         00                  00000110    001111              56


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +++.+|++||||||++..      .+.++|+++.+  ++|||++||+++++.+          +||++++|++ +++..|
T Consensus       163 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~----------~~d~v~~l~~G~i~~~g  230 (253)
T PRK14261        163 TLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAAR----------VSDYTGFMYLGKLIEFD  230 (253)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHh----------hCCEEEEEECCEEEEcC
Confidence            899999999999997654      47788888864  6899999999999976          9999999999 999889


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       231 ~~~~~~  236 (253)
T PRK14261        231 KTTQIF  236 (253)
T ss_pred             CHHHHH
Confidence            988775

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.6e-27  Score=216.00  Aligned_cols=166  Identities=13%  Similarity=0.103  Sum_probs=114.9

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCC--------c
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSN--------K  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~--------~  116 (280)
                      ++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+-...        .
T Consensus        12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~   90 (269)
T PRK14259         12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVL-RSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV   90 (269)
T ss_pred             ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence            489999999999988999999999999999999999999999999 99999742      22223221110        0


Q ss_pred             ccccccceeeeeccccc-------------------------ccccccCc----hHHHHH--------------Hhhhhc
Q 023563          117 DTRYGLDSIVTHDGVKL-------------------------PCCALTTL----SSFRQK--------------FGSDAY  153 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~~-------------------------~~~~~~~l----~~~~~~--------------~a~aL~  153 (280)
                      ..+..++++++......                         ..+...++    ....++              .+++|+
T Consensus        91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~  170 (269)
T PRK14259         91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA  170 (269)
T ss_pred             HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence            01122333333211000                         00000111    111111              167899


Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec----------
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA----------  217 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~----------  217 (280)
                      .+|++||||||++.+      .++++|++++ + +.|||++|||++++.+          +||++++|++          
T Consensus       171 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~----------~~d~i~~l~~~~~~~~~~g~  238 (269)
T PRK14259        171 IEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVR----------VSDMTAFFNAEEVEGGSGGK  238 (269)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHH----------hcCEEEEEeccccccccccc
Confidence            999999999997644      4788888885 3 7899999999999986          9999999984          


Q ss_pred             --eeccccCcceee
Q 023563          218 --RCEFCGKRAFFT  229 (280)
Q Consensus       218 --~i~~~g~~~~~~  229 (280)
                        +++..|+++++.
T Consensus       239 ~g~~~~~~~~~~~~  252 (269)
T PRK14259        239 VGYLVEFNETKKIF  252 (269)
T ss_pred             cceEEEeCCHHHHH
Confidence              456677776665

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.95  E-value=1.8e-27  Score=207.54  Aligned_cols=157  Identities=21%  Similarity=0.209  Sum_probs=107.0

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe----------eEEEecC
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR----------NVAVIKS  114 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~----------~i~~~~~  114 (280)
                      |+++|++++|+++.  .|+||+|++||+++|+||||||||||+ ++|+|+..        +|.          .+++++|
T Consensus         1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   77 (211)
T cd03298           1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLL-NLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ   77 (211)
T ss_pred             CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence            47899999998764  399999999999999999999999999 99999732        222          2334444


Q ss_pred             Cccccc--ccceeee---ecc---------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563          115 NKDTRY--GLDSIVT---HDG---------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF  166 (280)
Q Consensus       115 ~~~~~~--~~~~v~~---~~~---------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~  166 (280)
                      ......  .+...+.   ...         .....+...++....++.              +++++.+|++||||||++
T Consensus        78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~  157 (211)
T cd03298          78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFA  157 (211)
T ss_pred             ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            322100  0000000   000         000011112222222211              578999999999999976


Q ss_pred             HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      ..      .++++|++++++.|.|||++|||++++.+          +||++++|++ +++..
T Consensus       158 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~----------~~d~i~~l~~G~i~~~  210 (211)
T cd03298         158 ALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR----------LAQRVVFLDNGRIAAQ  210 (211)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh----------hhCEEEEEECCEEeec
Confidence            54      47888888876559999999999999976          9999999998 76543

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.95  E-value=2.9e-28  Score=230.63  Aligned_cols=166  Identities=19%  Similarity=0.116  Sum_probs=120.5

Q ss_pred             EcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Cc------c---c-c
Q 023563           55 PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NK------D---T-R  119 (280)
Q Consensus        55 ~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~------~---~-~  119 (280)
                      -.++.+.|+...+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..    ..      .   . +
T Consensus        27 ~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLl-r~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~  105 (382)
T TIGR03415        27 REEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLL-RAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT  105 (382)
T ss_pred             HHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence            45677889999999999999999999999999999999999 99999843 2233322211    00      0   0 1


Q ss_pred             cccceeeeeccccccc---------------------------ccccCchHHHHHH--------------hhhhccCCCE
Q 023563          120 YGLDSIVTHDGVKLPC---------------------------CALTTLSSFRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       120 ~~~~~v~~~~~~~~~~---------------------------~~~~~l~~~~~~~--------------a~aL~~~p~l  158 (280)
                      ..+++++|+.......                           +...++..+.+++              |++|+.+|++
T Consensus       106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I  185 (382)
T TIGR03415       106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI  185 (382)
T ss_pred             CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            2355555533221100                           1111222211111              5789999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~  231 (280)
                      ||||||++.+      ++++.|.++.++.|+|||++|||++++.+          +||+|++|++ +++..|+++++..+
T Consensus       186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~----------l~DrI~vl~~G~iv~~g~~~ei~~~  255 (382)
T TIGR03415       186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALK----------IGNRIAIMEGGRIIQHGTPEEIVLN  255 (382)
T ss_pred             EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEecCHHHHhhC
Confidence            9999997654      58888988887669999999999999976          9999999999 99999999988743

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.95  E-value=3.7e-27  Score=208.03  Aligned_cols=164  Identities=15%  Similarity=0.093  Sum_probs=112.1

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------cccccc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGL  122 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~  122 (280)
                      .++|+++|+++.|+++.+++|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....      ..+..+
T Consensus         5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (225)
T PRK10247          5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLL-KIVASLISPTSGTLLFEGEDISTLKPEIYRQQV   83 (225)
T ss_pred             CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence            4589999999999988899999999999999999999999999999 99999732 222221111000      001112


Q ss_pred             ceeeeeccc------------------------ccccccccCch-HHHHHH--------------hhhhccCCCEEEEeC
Q 023563          123 DSIVTHDGV------------------------KLPCCALTTLS-SFRQKF--------------GSDAYDQVDVIGIDE  163 (280)
Q Consensus       123 ~~v~~~~~~------------------------~~~~~~~~~l~-~~~~~~--------------a~aL~~~p~lLlLDE  163 (280)
                      +++++....                        ....+...++. .+.++.              +++|+.+|++|||||
T Consensus        84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  163 (225)
T PRK10247         84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE  163 (225)
T ss_pred             EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            222221100                        00111112221 111111              678999999999999


Q ss_pred             cccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec--eeccccCc
Q 023563          164 AQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA--RCEFCGKR  225 (280)
Q Consensus       164 P~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~--~i~~~g~~  225 (280)
                      |+...      .+.++|+++.++.|.|||++|||++++.           .||++++|++  ..+..|+.
T Consensus       164 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-----------~~d~i~~l~~~~~~~~~~~~  222 (225)
T PRK10247        164 ITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-----------HADKVITLQPHAGEMQEARY  222 (225)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-----------hCCEEEEEecccchHhhhhh
Confidence            96543      5788888887656899999999999884           7999999963  66666653

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.7e-27  Score=238.81  Aligned_cols=170  Identities=15%  Similarity=0.075  Sum_probs=122.3

Q ss_pred             CccEEEcCceEEeC-----------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-
Q 023563           50 HSMVSPRPPLFSLQ-----------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~-----------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-  116 (280)
                      .++|+++||++.|+           .+.+|+||||+|++||+++|+||||||||||+ ++|.|+.. ....|.+..... 
T Consensus       311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLl-k~i~Gl~~p~~G~I~~~g~~i~  389 (623)
T PRK10261        311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTG-RALLRLVESQGGEIIFNGQRID  389 (623)
T ss_pred             CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCcEEEECCEECC
Confidence            46899999999996           14799999999999999999999999999999 99999832 122222111000 


Q ss_pred             --------ccccccceeeeecc-cc-----------------------------cccccccCch-HHHHHH---------
Q 023563          117 --------DTRYGLDSIVTHDG-VK-----------------------------LPCCALTTLS-SFRQKF---------  148 (280)
Q Consensus       117 --------~~~~~~~~v~~~~~-~~-----------------------------~~~~~~~~l~-~~~~~~---------  148 (280)
                              ..+..+++++|... .+                             ...+...++. ...+++         
T Consensus       390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr  469 (623)
T PRK10261        390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR  469 (623)
T ss_pred             cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence                    00112333333210 00                             0111122332 222222         


Q ss_pred             -----hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 -----GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 -----a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                           |+||+.+|++||||||++.+      .++++|++++++.|.|||++|||++++.+          +||+|++|++
T Consensus       470 QRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~----------~~dri~vl~~  539 (623)
T PRK10261        470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVER----------ISHRVAVMYL  539 (623)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEEC
Confidence                 67899999999999997654      58899999987669999999999999987          9999999999


Q ss_pred             -eeccccCcceeee
Q 023563          218 -RCEFCGKRAFFTL  230 (280)
Q Consensus       218 -~i~~~g~~~~~~~  230 (280)
                       ++++.|++++++.
T Consensus       540 G~iv~~g~~~~i~~  553 (623)
T PRK10261        540 GQIVEIGPRRAVFE  553 (623)
T ss_pred             CEEEEecCHHHHhc
Confidence             9999999998863

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.95  E-value=5.3e-27  Score=202.78  Aligned_cols=158  Identities=20%  Similarity=0.225  Sum_probs=113.2

Q ss_pred             cEEEcCceEEeCC------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--h-CCeeEEEecCCc---ccc
Q 023563           52 MVSPRPPLFSLQN------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--Q-KGRNVAVIKSNK---DTR  119 (280)
Q Consensus        52 ~l~~~~ls~~y~~------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--~-~g~~i~~~~~~~---~~~  119 (280)
                      .|+++|++++|++      +.+|+++||+|++|++++|+||||||||||+ ++|+|+.  . ....+.+.....   ..+
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl-~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~   81 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLL-NALAGRRTGLGVSGEVLINGRPLDKRSFR   81 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence            4899999999975      6799999999999999999999999999999 9999986  3 333443322211   112


Q ss_pred             cccceeeeecccccccccc-c---------CchHHH-H--HHhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhh
Q 023563          120 YGLDSIVTHDGVKLPCCAL-T---------TLSSFR-Q--KFGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADH  180 (280)
Q Consensus       120 ~~~~~v~~~~~~~~~~~~~-~---------~l~~~~-~--~~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~  180 (280)
                      ..+.++++.... ++.... .         .++.=. .  ..+++|+.+|++||||||++.      ..++++|+++.++
T Consensus        82 ~~i~~~~q~~~~-~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~  160 (194)
T cd03213          82 KIIGYVPQDDIL-HPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT  160 (194)
T ss_pred             heEEEccCcccC-CCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence            334444443222 111111 1         121111 1  127899999999999999654      4588888888765


Q ss_pred             cCCEEEEEEechh-HhhhccCCccccccccceEEEeec-eeccc
Q 023563          181 DGKTVIVAGLDGD-YLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       181 ~g~tviivtHdl~-~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                       |+|+|++|||++ ++.+          +||++++|++ +++..
T Consensus       161 -~~tiii~sh~~~~~~~~----------~~d~v~~l~~G~i~~~  193 (194)
T cd03213         161 -GRTIICSIHQPSSEIFE----------LFDKLLLLSQGRVIYF  193 (194)
T ss_pred             -CCEEEEEecCchHHHHH----------hcCEEEEEeCCEEEec
Confidence             999999999996 5655          8999999998 76543

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.6e-27  Score=211.64  Aligned_cols=168  Identities=11%  Similarity=0.070  Sum_probs=120.1

Q ss_pred             CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc------
Q 023563           49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------  116 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------  116 (280)
                      .+++|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..      ....+.+.....      
T Consensus        16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~   94 (267)
T PRK14235         16 TEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFL-RCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD   94 (267)
T ss_pred             CCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcccccCCCCceEEEECCEECcccccc
Confidence            34589999999999988999999999999999999999999999999 99999753      233333222110      


Q ss_pred             --ccccccceeeeeccccc----------------------------ccccccCchH----HHHHH--------------
Q 023563          117 --DTRYGLDSIVTHDGVKL----------------------------PCCALTTLSS----FRQKF--------------  148 (280)
Q Consensus       117 --~~~~~~~~v~~~~~~~~----------------------------~~~~~~~l~~----~~~~~--------------  148 (280)
                        ..+..++++++......                            ..+...++..    ..++.              
T Consensus        95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l  174 (267)
T PRK14235         95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI  174 (267)
T ss_pred             hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence              01122333333211000                            0011112211    11111              


Q ss_pred             hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      +++|+.+|++||||||++..      .+.+.|+++++  +.|||++|||++++.+          +||++++|++ +++.
T Consensus       175 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~----------~~d~v~~l~~G~i~~  242 (267)
T PRK14235        175 ARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAAR----------VSQRTAFFHLGNLVE  242 (267)
T ss_pred             HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHh----------hCCEEEEEECCEEEE
Confidence            67899999999999996644      57888888854  6899999999999976          9999999999 9999


Q ss_pred             ccCcceee
Q 023563          222 CGKRAFFT  229 (280)
Q Consensus       222 ~g~~~~~~  229 (280)
                      .|+++++.
T Consensus       243 ~g~~~~~~  250 (267)
T PRK14235        243 VGDTEKMF  250 (267)
T ss_pred             eCCHHHHH
Confidence            99888776

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.95  E-value=4.2e-27  Score=209.25  Aligned_cols=166  Identities=16%  Similarity=0.178  Sum_probs=116.2

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceeee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIVT  127 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~~  127 (280)
                      |+++|++++|+++.+|+|+||+|.+||+++|+||||||||||+ ++|+|+.. ....+.+...+    ...+..++++++
T Consensus         1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q   79 (237)
T TIGR00968         1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLL-RIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ   79 (237)
T ss_pred             CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence            4789999999988999999999999999999999999999999 99999732 12222111100    001112222222


Q ss_pred             ecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563          128 HDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF  166 (280)
Q Consensus       128 ~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~  166 (280)
                      .....                           ...+...++..+.++.              +++++.+|+++|||||++
T Consensus        80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~  159 (237)
T TIGR00968        80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFG  159 (237)
T ss_pred             ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            11100                           0001111222111111              568999999999999966


Q ss_pred             HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ..      .+++.|.+++++.|+|||++||+++++.+          +||++++|++ +++..|+.+++.
T Consensus       160 ~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~----------~~d~i~~l~~g~i~~~~~~~~~~  219 (237)
T TIGR00968       160 ALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAME----------VADRIVVMSNGKIEQIGSPDEVY  219 (237)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh----------hcCEEEEEECCEEEEecCHHHHH
Confidence            54      47888888876558999999999999876          9999999999 998888888775

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.6e-27  Score=215.59  Aligned_cols=168  Identities=14%  Similarity=0.051  Sum_probs=119.3

Q ss_pred             CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc------
Q 023563           49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------  116 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------  116 (280)
                      ..++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|.|+..      ....+.+-....      
T Consensus        36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~  114 (286)
T PRK14275         36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFL-RAINRMNDLIPSCHTTGALMFDGEDIYGKFTD  114 (286)
T ss_pred             CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence            45689999999999888899999999999999999999999999999 99999631      333333211110      


Q ss_pred             --ccccccceeeeecccc---------c------------------ccccccCc----hHHHHHH--------------h
Q 023563          117 --DTRYGLDSIVTHDGVK---------L------------------PCCALTTL----SSFRQKF--------------G  149 (280)
Q Consensus       117 --~~~~~~~~v~~~~~~~---------~------------------~~~~~~~l----~~~~~~~--------------a  149 (280)
                        ..+..++++++.....         +                  ..+...++    .+..++.              +
T Consensus       115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA  194 (286)
T PRK14275        115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA  194 (286)
T ss_pred             hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence              1122333443321110         0                  00000011    1111111              6


Q ss_pred             hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      ++|+.+|++||||||++.+      .+++.|+++++  +.|||++|||++++.+          +||++++|++ +++..
T Consensus       195 raL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~----------~~d~i~~L~~G~i~~~  262 (286)
T PRK14275        195 RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASR----------VSDYTMFFYEGVLVEH  262 (286)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHH----------hCCEEEEEECCEEEEe
Confidence            7899999999999997654      47788888754  6899999999999876          9999999999 99999


Q ss_pred             cCcceee
Q 023563          223 GKRAFFT  229 (280)
Q Consensus       223 g~~~~~~  229 (280)
                      |+++++.
T Consensus       263 g~~~~~~  269 (286)
T PRK14275        263 APTAQLF  269 (286)
T ss_pred             CCHHHHH
Confidence            9988776

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.95  E-value=1.6e-27  Score=203.00  Aligned_cols=155  Identities=15%  Similarity=0.117  Sum_probs=109.3

Q ss_pred             EEEcCceEEeCCe--eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----ccccccce
Q 023563           53 VSPRPPLFSLQNR--NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGLDS  124 (280)
Q Consensus        53 l~~~~ls~~y~~~--~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~~~  124 (280)
                      |+++|++++|+++  .+++|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....     ..+..+++
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~   79 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLL-QLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV   79 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence            4789999999764  799999999999999999999999999999 99999843 222332221110     11223444


Q ss_pred             eeeecccccccccc----cCchH-HHHH--HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEec
Q 023563          125 IVTHDGVKLPCCAL----TTLSS-FRQK--FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLD  191 (280)
Q Consensus       125 v~~~~~~~~~~~~~----~~l~~-~~~~--~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHd  191 (280)
                      +++.... ++....    ..++. ...+  .+++++.+|++||||||++..      .+++.|+++. + +.|||++||+
T Consensus        80 ~~q~~~~-~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~  156 (178)
T cd03247          80 LNQRPYL-FDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHH  156 (178)
T ss_pred             EccCCee-ecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecC
Confidence            4443222 221111    11211 1222  278999999999999997654      4778888774 4 8999999999


Q ss_pred             hhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          192 GDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       192 l~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      ++++.           .||++++|++ ++++.
T Consensus       157 ~~~~~-----------~~d~~~~l~~g~i~~~  177 (178)
T cd03247         157 LTGIE-----------HMDKILFLENGKIIMQ  177 (178)
T ss_pred             HHHHH-----------hCCEEEEEECCEEEec
Confidence            99884           6999999998 77644

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.8e-27  Score=235.50  Aligned_cols=170  Identities=14%  Similarity=0.062  Sum_probs=122.7

Q ss_pred             CCccEEEcCceEEeC----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC---------
Q 023563           49 IHSMVSPRPPLFSLQ----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS---------  114 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~---------  114 (280)
                      .+++|+++|++++|+    +..+|+||||+|++||++||+||||||||||+ ++|+|+.. ....+.+-..         
T Consensus         9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl-~~l~Gll~p~~G~i~~~g~~~~~~~~~~   87 (623)
T PRK10261          9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTA-LALMRLLEQAGGLVQCDKMLLRRRSRQV   87 (623)
T ss_pred             CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCeEEEECCEEeccccccc
Confidence            456899999999996    35799999999999999999999999999999 99999842 2222221100         


Q ss_pred             ------Cc----cc-ccccceeeeecc-ccc-----------------------------ccccccCch---HHHHHH--
Q 023563          115 ------NK----DT-RYGLDSIVTHDG-VKL-----------------------------PCCALTTLS---SFRQKF--  148 (280)
Q Consensus       115 ------~~----~~-~~~~~~v~~~~~-~~~-----------------------------~~~~~~~l~---~~~~~~--  148 (280)
                            ..    .. +..+++++|... .+.                             ..+...++.   ..++++  
T Consensus        88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~  167 (623)
T PRK10261         88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH  167 (623)
T ss_pred             cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence                  00    00 113444444320 000                             011122331   112221  


Q ss_pred             ------------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccc
Q 023563          149 ------------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLAD  210 (280)
Q Consensus       149 ------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD  210 (280)
                                  |+||+.+|++|||||||+.+      .++++|++++++.|+|||++|||++++.+          +||
T Consensus       168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~----------~ad  237 (623)
T PRK10261        168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAE----------IAD  237 (623)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH----------hCC
Confidence                        67899999999999997654      48889999987669999999999999986          999


Q ss_pred             eEEEeec-eeccccCcceee
Q 023563          211 SVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       211 ~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +|++|++ +++..|++++++
T Consensus       238 ri~vl~~G~i~~~g~~~~~~  257 (623)
T PRK10261        238 RVLVMYQGEAVETGSVEQIF  257 (623)
T ss_pred             EEEEeeCCeecccCCHHHhh
Confidence            9999999 999999988876

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.94  E-value=2.1e-27  Score=233.43  Aligned_cols=166  Identities=12%  Similarity=0.081  Sum_probs=119.5

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEe----------cC-----
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVI----------KS-----  114 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~----------~~-----  114 (280)
                      |+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+ ++|+|+.   .....+.+.          +|     
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl-~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g   79 (520)
T TIGR03269         1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLM-HVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG   79 (520)
T ss_pred             CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence            5789999999988999999999999999999999999999999 9999984   333444332          00     


Q ss_pred             --------------------Cc----ccccccceeeee-cccccc---------------------------cccccCch
Q 023563          115 --------------------NK----DTRYGLDSIVTH-DGVKLP---------------------------CCALTTLS  142 (280)
Q Consensus       115 --------------------~~----~~~~~~~~v~~~-~~~~~~---------------------------~~~~~~l~  142 (280)
                                          ..    ..+..+++++|. ......                           .+...++.
T Consensus        80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~  159 (520)
T TIGR03269        80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS  159 (520)
T ss_pred             cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence                                00    011224444443 111100                           01111222


Q ss_pred             HHHHHH--------------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCc
Q 023563          143 SFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSV  202 (280)
Q Consensus       143 ~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~  202 (280)
                      ++.++.              |+||+.+|++||||||++.+      .++++|++++++.|+|||++|||++++.+     
T Consensus       160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~-----  234 (520)
T TIGR03269       160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIED-----  234 (520)
T ss_pred             hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH-----
Confidence            222111              56899999999999997654      47888899876569999999999999986     


Q ss_pred             cccccccceEEEeec-eeccccCcceee
Q 023563          203 IDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       203 ~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                           +||+|++|++ +++..|+++++.
T Consensus       235 -----~~d~i~~l~~G~i~~~g~~~~~~  257 (520)
T TIGR03269       235 -----LSDKAIWLENGEIKEEGTPDEVV  257 (520)
T ss_pred             -----hcCEEEEEeCCEEeeecCHHHHH
Confidence                 9999999999 888888776554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.94  E-value=2.4e-27  Score=222.89  Aligned_cols=162  Identities=17%  Similarity=0.158  Sum_probs=114.6

Q ss_pred             CceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------ccccccccee
Q 023563           57 PPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----------KDTRYGLDSI  125 (280)
Q Consensus        57 ~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----------~~~~~~~~~v  125 (280)
                      ||+++|+++.+  |+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+....          ...+..++++
T Consensus         4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl-~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v   80 (354)
T TIGR02142         4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLI-RLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV   80 (354)
T ss_pred             EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence            79999988764  99999999999999999999999999 99999842 22222211100          0112233444


Q ss_pred             eeecccccc-------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563          126 VTHDGVKLP-------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF  166 (280)
Q Consensus       126 ~~~~~~~~~-------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~  166 (280)
                      +|.......                         .+...++..+.++.              |+||+.+|++||||||++
T Consensus        81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts  160 (354)
T TIGR02142        81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLA  160 (354)
T ss_pred             ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence            442211100                         01111222222211              678999999999999966


Q ss_pred             HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563          167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~  231 (280)
                      .+      .+++.|++++++.|+|+|++|||++++..          +||++++|++ +++..|+++++..+
T Consensus       161 ~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~~~  222 (354)
T TIGR02142       161 ALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLR----------LADRVVVLEDGRVAAAGPIAEVWAS  222 (354)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEEeCCEEEEECCHHHHhcC
Confidence            54      58889999887668999999999999976          9999999999 99999998887643

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.4e-27  Score=212.03  Aligned_cols=168  Identities=14%  Similarity=0.111  Sum_probs=118.1

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc--------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK--------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~--------  116 (280)
                      ++|+++|++++|++..+|+|+||+|++|++++|+||||||||||+ ++|+|+...      ...+.+..++.        
T Consensus         6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~   84 (261)
T PRK14258          6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFL-KCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN   84 (261)
T ss_pred             ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHH-HHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence            479999999999888899999999999999999999999999999 999998542      22333222110        


Q ss_pred             ccccccceeeeeccccc-----------------c----------cccccCch----HHHHHH--------------hhh
Q 023563          117 DTRYGLDSIVTHDGVKL-----------------P----------CCALTTLS----SFRQKF--------------GSD  151 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~~-----------------~----------~~~~~~l~----~~~~~~--------------a~a  151 (280)
                      ..+..+.++++......                 .          .+...++.    ....+.              |++
T Consensus        85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara  164 (261)
T PRK14258         85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA  164 (261)
T ss_pred             HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence            01122333333211000                 0          00011110    011111              578


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec------ee
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA------RC  219 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~------~i  219 (280)
                      |+.+|++||||||++..      .+++.|++++++.|.|||++|||++++.+          +||+|++|++      ++
T Consensus       165 l~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~----------~~d~i~~l~~~~~~~G~i  234 (261)
T PRK14258        165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSR----------LSDFTAFFKGNENRIGQL  234 (261)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH----------hcCEEEEEccCCCcCceE
Confidence            99999999999997654      47788888765458999999999999986          9999999994      67


Q ss_pred             ccccCcceee
Q 023563          220 EFCGKRAFFT  229 (280)
Q Consensus       220 ~~~g~~~~~~  229 (280)
                      +..|+++++.
T Consensus       235 ~~~~~~~~~~  244 (261)
T PRK14258        235 VEFGLTKKIF  244 (261)
T ss_pred             EEeCCHHHHH
Confidence            7778888775

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=6.4e-27  Score=205.04  Aligned_cols=156  Identities=15%  Similarity=0.128  Sum_probs=107.1

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCee---------EEEe
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRN---------VAVI  112 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~---------i~~~  112 (280)
                      .++|+++|++++|+++.+++++||+|++||+++|+||||||||||+ ++|+|+..        +|..         ++++
T Consensus         9 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~   87 (214)
T PRK13543          9 PPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLL-RVLAGLLHVESGQIQIDGKTATRGDRSRFMAYL   87 (214)
T ss_pred             cceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHH-HHHhCCCCCCCeeEEECCEEccchhhhhceEEe
Confidence            4589999999999988899999999999999999999999999999 99999732        2221         3333


Q ss_pred             cCCcccccc--cceeee----ecc-----cccccccccCchHHHHH--------------HhhhhccCCCEEEEeCcccH
Q 023563          113 KSNKDTRYG--LDSIVT----HDG-----VKLPCCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEAQFF  167 (280)
Q Consensus       113 ~~~~~~~~~--~~~v~~----~~~-----~~~~~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP~~~  167 (280)
                      +|.......  +...+.    ...     .....+...++....++              .+++++.+|++||||||++.
T Consensus        88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~  167 (214)
T PRK13543         88 GHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYAN  167 (214)
T ss_pred             ecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            332111000  000000    000     00000111122111111              15789999999999999765


Q ss_pred             H------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          168 E------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       168 ~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      .      .+++.|+++.++ |.|+|++|||++++.+          +||++++|+.
T Consensus       168 LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~~~i~~l~~  212 (214)
T PRK13543        168 LDLEGITLVNRMISAHLRG-GGAALVTTHGAYAAPP----------VRTRMLTLEA  212 (214)
T ss_pred             CCHHHHHHHHHHHHHHHhC-CCEEEEEecChhhhhh----------hcceEEEEee
Confidence            4      477888888765 8999999999999986          9999999874

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.94  E-value=5e-27  Score=231.19  Aligned_cols=168  Identities=16%  Similarity=0.195  Sum_probs=120.7

Q ss_pred             ccEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc----
Q 023563           51 SMVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK----  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~----  116 (280)
                      +||+++|++++|++    +.+|+|+||+|.+||+++|+||||||||||+ ++|+|+...      ...+.+.....    
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~   82 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTA-LSILRLLPSPPVVYPSGDIRFHGESLLHAS   82 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHH-HHHhcCCCCCcCCccceEEEECCEecccCC
Confidence            48999999999963    5799999999999999999999999999999 999998531      22232211110    


Q ss_pred             -----ccc-cccceeeeeccc-c-----------------------------cccccccCchH---HHHHH---------
Q 023563          117 -----DTR-YGLDSIVTHDGV-K-----------------------------LPCCALTTLSS---FRQKF---------  148 (280)
Q Consensus       117 -----~~~-~~~~~v~~~~~~-~-----------------------------~~~~~~~~l~~---~~~~~---------  148 (280)
                           ..+ ..+++++|.... .                             ...+...++.+   +.++.         
T Consensus        83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~  162 (529)
T PRK15134         83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER  162 (529)
T ss_pred             HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence                 000 123333332110 0                             00111123322   11211         


Q ss_pred             -----hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 -----GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 -----a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                           |+||+.+|++||||||++.+      .++++|++++++.|+|||++|||++++.+          +||+|++|++
T Consensus       163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~----------~~dri~~l~~  232 (529)
T PRK15134        163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRK----------LADRVAVMQN  232 (529)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH----------hcCEEEEEEC
Confidence                 67899999999999997765      47888999876568999999999999986          9999999999


Q ss_pred             -eeccccCcceee
Q 023563          218 -RCEFCGKRAFFT  229 (280)
Q Consensus       218 -~i~~~g~~~~~~  229 (280)
                       +++..|+++++.
T Consensus       233 G~i~~~g~~~~~~  245 (529)
T PRK15134        233 GRCVEQNRAATLF  245 (529)
T ss_pred             CEEEEeCCHHHHh
Confidence             998889887765

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=7.2e-27  Score=209.08  Aligned_cols=165  Identities=13%  Similarity=0.120  Sum_probs=117.2

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc--------c
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK--------D  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~--------~  117 (280)
                      +|+++|++++|+++.+++|+||+|++|++++|+||||||||||+ ++|+|+...      ...+.+-....        .
T Consensus         4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   82 (252)
T PRK14272          4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFL-RAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA   82 (252)
T ss_pred             EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence            79999999999988999999999999999999999999999999 999997421      12232211110        1


Q ss_pred             cccccceeeeeccccccc----------------------------ccccCc----hHHHHHH--------------hhh
Q 023563          118 TRYGLDSIVTHDGVKLPC----------------------------CALTTL----SSFRQKF--------------GSD  151 (280)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~----------------------------~~~~~l----~~~~~~~--------------a~a  151 (280)
                      .+..++++++........                            +...++    ....++.              +++
T Consensus        83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  162 (252)
T PRK14272         83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA  162 (252)
T ss_pred             hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence            112233333321110000                            000000    0011111              568


Q ss_pred             hccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          152 AYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      ++.+|++||||||++.      ..+.+.|++++ + ++|||++||+++++.+          +||++++|++ +++..|+
T Consensus       163 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~  230 (252)
T PRK14272        163 LAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAAR----------VSDTTSFFLVGDLVEHGP  230 (252)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCC
Confidence            9999999999999664      45788888885 3 7999999999999986          9999999999 9999999


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      ++++.
T Consensus       231 ~~~~~  235 (252)
T PRK14272        231 TDQLF  235 (252)
T ss_pred             HHHHH
Confidence            88876

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.94  E-value=6.5e-27  Score=208.73  Aligned_cols=164  Identities=19%  Similarity=0.144  Sum_probs=113.8

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEecCCcc-------cccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVIKSNKD-------TRYG  121 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~~~~~~-------~~~~  121 (280)
                      ||+++|++++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+.   .....+.+-.....       .+..
T Consensus         1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (248)
T PRK09580          1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLS-ATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG   79 (248)
T ss_pred             CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence            58999999999988899999999999999999999999999999 9999983   33333322211100       0111


Q ss_pred             cceeeeecccc------------c------------c----------cccccC-------------chHH-HHH--Hhhh
Q 023563          122 LDSIVTHDGVK------------L------------P----------CCALTT-------------LSSF-RQK--FGSD  151 (280)
Q Consensus       122 ~~~v~~~~~~~------------~------------~----------~~~~~~-------------l~~~-~~~--~a~a  151 (280)
                      +.++++.....            .            .          .+...+             ++.= ..+  .|++
T Consensus        80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara  159 (248)
T PRK09580         80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM  159 (248)
T ss_pred             eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence            22222211000            0            0          000000             1100 111  1678


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc-cceEEEeec-eecccc
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL-ADSVTKLTA-RCEFCG  223 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~-aD~i~~L~~-~i~~~g  223 (280)
                      ++.+|++||||||++..      .+.++|+++++. |+|||++|||++++..          + ||++++|++ +++..|
T Consensus       160 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tiii~sH~~~~~~~----------~~~d~i~~l~~g~i~~~g  228 (248)
T PRK09580        160 AVLEPELCILDESDSGLDIDALKIVADGVNSLRDG-KRSFIIVTHYQRILDY----------IKPDYVHVLYQGRIVKSG  228 (248)
T ss_pred             HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHh----------hhCCEEEEEECCeEEEeC
Confidence            99999999999997654      477788888764 8999999999999875          6 899999998 888888


Q ss_pred             Ccce
Q 023563          224 KRAF  227 (280)
Q Consensus       224 ~~~~  227 (280)
                      +++.
T Consensus       229 ~~~~  232 (248)
T PRK09580        229 DFTL  232 (248)
T ss_pred             CHHH
Confidence            7763

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.1e-26  Score=207.64  Aligned_cols=165  Identities=13%  Similarity=0.112  Sum_probs=116.3

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch----hCCeeEEEecCCc------ccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET----QKGRNVAVIKSNK------DTRYG  121 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~----~~g~~i~~~~~~~------~~~~~  121 (280)
                      +++++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.    .....+.+.....      ..+..
T Consensus         2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~   80 (246)
T PRK14269          2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFL-RCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN   80 (246)
T ss_pred             ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence            68999999999988999999999999999999999999999999 9999974    1222222111100      01112


Q ss_pred             cceeeeecccc----------------------------cccccccCch----HHHHHH--------------hhhhccC
Q 023563          122 LDSIVTHDGVK----------------------------LPCCALTTLS----SFRQKF--------------GSDAYDQ  155 (280)
Q Consensus       122 ~~~v~~~~~~~----------------------------~~~~~~~~l~----~~~~~~--------------a~aL~~~  155 (280)
                      +++++++....                            ...+...++.    +..++.              +++++.+
T Consensus        81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  160 (246)
T PRK14269         81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK  160 (246)
T ss_pred             EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            22333221100                            0001111221    111111              6789999


Q ss_pred             CCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          156 VDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       156 p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      |++||||||++.      ..+.+.|.++. + |+|+|++||+++++.+          +||++++|++ +++..|+++++
T Consensus       161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~  228 (246)
T PRK14269        161 PKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKR----------VADYTAFFHLGELIEFGESKEF  228 (246)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHh----------hCcEEEEEECCEEEEECCHHHH
Confidence            999999999654      35778888875 3 8999999999999876          9999999999 99989988877


Q ss_pred             e
Q 023563          229 T  229 (280)
Q Consensus       229 ~  229 (280)
                      .
T Consensus       229 ~  229 (246)
T PRK14269        229 F  229 (246)
T ss_pred             H
Confidence            5

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.94  E-value=1.2e-26  Score=200.18  Aligned_cols=158  Identities=16%  Similarity=0.173  Sum_probs=110.0

Q ss_pred             cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEecCC--ccccccc
Q 023563           52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVIKSN--KDTRYGL  122 (280)
Q Consensus        52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~~~~--~~~~~~~  122 (280)
                      +|+++|+++.|++    +.+|+++||+|++|++++|+||||||||||+ ++|+|+.   .....+.+-...  ...+..+
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i   81 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLL-DVLAGRKTAGVITGEILINGRPLDKNFQRST   81 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence            6899999999974    6799999999999999999999999999999 9999963   233333322211  1112233


Q ss_pred             ceeeeecccccccccccC---------chHH-HHH--HhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCE
Q 023563          123 DSIVTHDGVKLPCCALTT---------LSSF-RQK--FGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKT  184 (280)
Q Consensus       123 ~~v~~~~~~~~~~~~~~~---------l~~~-~~~--~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~t  184 (280)
                      .++++............+         ++.= ..+  .+++++.+|++||||||++.      ..+++.|++++++ |+|
T Consensus        82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~t  160 (192)
T cd03232          82 GYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQA  160 (192)
T ss_pred             EEecccCccccCCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc-CCE
Confidence            444443222111111111         1111 111  27899999999999999654      4588888888765 999


Q ss_pred             EEEEEechhH-hhhccCCccccccccceEEEeec--eecc
Q 023563          185 VIVAGLDGDY-LRRSFGSVIDIIPLADSVTKLTA--RCEF  221 (280)
Q Consensus       185 viivtHdl~~-~~~~~~~~~~ll~~aD~i~~L~~--~i~~  221 (280)
                      +|++||++++ +.+          +||++++|++  ++++
T Consensus       161 iiivtH~~~~~~~~----------~~d~i~~l~~~g~i~~  190 (192)
T cd03232         161 ILCTIHQPSASIFE----------KFDRLLLLKRGGKTVY  190 (192)
T ss_pred             EEEEEcCChHHHHh----------hCCEEEEEcCCCeEEe
Confidence            9999999984 554          8999999975  5544

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.94  E-value=6.7e-27  Score=228.70  Aligned_cols=165  Identities=13%  Similarity=0.094  Sum_probs=118.3

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---CeeEEEecCCcc-------cccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---GRNVAVIKSNKD-------TRYG  121 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---g~~i~~~~~~~~-------~~~~  121 (280)
                      +|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+...   ...+.+......       .+..
T Consensus         1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl-~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (500)
T TIGR02633         1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLM-KILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG   79 (500)
T ss_pred             CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence            48999999999988899999999999999999999999999999 999998542   333332211100       0122


Q ss_pred             cceeeeeccccc-------------------------------ccccccCchHHH-HH--------------HhhhhccC
Q 023563          122 LDSIVTHDGVKL-------------------------------PCCALTTLSSFR-QK--------------FGSDAYDQ  155 (280)
Q Consensus       122 ~~~v~~~~~~~~-------------------------------~~~~~~~l~~~~-~~--------------~a~aL~~~  155 (280)
                      +++++|......                               ..+...++.... ++              .|++|+.+
T Consensus        80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~  159 (500)
T TIGR02633        80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ  159 (500)
T ss_pred             EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence            333433211000                               001111111110 01              16789999


Q ss_pred             CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      |++||||||++..      .++++|++++++ |+|||++|||++++.+          +||+|++|++ +++..|+++++
T Consensus       160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiitHd~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~  228 (500)
T TIGR02633       160 ARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKA----------VCDTICVIRDGQHVATKDMSTM  228 (500)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHHHHHH----------hCCEEEEEeCCeEeeecCcccC
Confidence            9999999997654      588889988765 9999999999999986          9999999999 98888887655

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.94  E-value=3.7e-27  Score=232.11  Aligned_cols=169  Identities=12%  Similarity=0.094  Sum_probs=121.3

Q ss_pred             CccEEEcCceEEeC-----------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc--
Q 023563           50 HSMVSPRPPLFSLQ-----------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK--  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~-----------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~--  116 (280)
                      .++|+++|++++|+           ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+......|.+-....  
T Consensus       273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-k~l~Gl~~~~G~i~~~g~~i~~  351 (529)
T PRK15134        273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTG-LALLRLINSQGEIWFDGQPLHN  351 (529)
T ss_pred             CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHhCcCCCCcEEEECCEEccc
Confidence            46899999999995           36799999999999999999999999999999 99999743222222111000  


Q ss_pred             -------ccccccceeeeecc--cc-----------------------------cccccccCch-HHHHHH---------
Q 023563          117 -------DTRYGLDSIVTHDG--VK-----------------------------LPCCALTTLS-SFRQKF---------  148 (280)
Q Consensus       117 -------~~~~~~~~v~~~~~--~~-----------------------------~~~~~~~~l~-~~~~~~---------  148 (280)
                             ..+..+++++|...  ..                             ...+...++. ...++.         
T Consensus       352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~  431 (529)
T PRK15134        352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR  431 (529)
T ss_pred             cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence                   00112333333210  00                             0001112232 122211         


Q ss_pred             -----hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 -----GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 -----a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                           |++|+.+|++||||||++.+      .++++|++++++.|.|||++|||++++.+          +||++++|++
T Consensus       432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~----------~~d~i~~l~~  501 (529)
T PRK15134        432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRA----------LCHQVIVLRQ  501 (529)
T ss_pred             HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHH----------hcCeEEEEEC
Confidence                 57899999999999997654      58889999887568999999999999986          9999999999


Q ss_pred             -eeccccCcceee
Q 023563          218 -RCEFCGKRAFFT  229 (280)
Q Consensus       218 -~i~~~g~~~~~~  229 (280)
                       ++++.|+++++.
T Consensus       502 G~i~~~~~~~~~~  514 (529)
T PRK15134        502 GEVVEQGDCERVF  514 (529)
T ss_pred             CEEEEEcCHHHHh
Confidence             999999988876

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=8.9e-27  Score=208.35  Aligned_cols=165  Identities=12%  Similarity=0.089  Sum_probs=116.2

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------c
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------D  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------~  117 (280)
                      +|+++||++.|+++.+++|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+-....        .
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   81 (250)
T PRK14240          3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFL-RTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ   81 (250)
T ss_pred             eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence            58999999999888899999999999999999999999999999 99999632      123332221110        0


Q ss_pred             cccccceeeeecccc---------cc------------------cccccCch----HHHHHH--------------hhhh
Q 023563          118 TRYGLDSIVTHDGVK---------LP------------------CCALTTLS----SFRQKF--------------GSDA  152 (280)
Q Consensus       118 ~~~~~~~v~~~~~~~---------~~------------------~~~~~~l~----~~~~~~--------------a~aL  152 (280)
                      .+..++++++.....         ..                  .+...++.    ...++.              +++|
T Consensus        82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  161 (250)
T PRK14240         82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL  161 (250)
T ss_pred             HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            112233333321100         00                  00001110    111111              5789


Q ss_pred             ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563          153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR  225 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~  225 (280)
                      +.+|++||||||++..      .+++.|+++. + +.|||++|||++++.+          +||++++|++ +++..|++
T Consensus       162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~----------~~d~v~~l~~G~i~~~~~~  229 (250)
T PRK14240        162 AVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASR----------ISDKTAFFLNGEIVEFGDT  229 (250)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHh----------hCCEEEEEECCEEEEeCCH
Confidence            9999999999996654      4778888884 3 7899999999998876          9999999999 99888888


Q ss_pred             ceee
Q 023563          226 AFFT  229 (280)
Q Consensus       226 ~~~~  229 (280)
                      +++.
T Consensus       230 ~~~~  233 (250)
T PRK14240        230 VDLF  233 (250)
T ss_pred             HHHH
Confidence            7765

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6.8e-27  Score=210.52  Aligned_cols=166  Identities=12%  Similarity=0.072  Sum_probs=117.7

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc--------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK--------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~--------  116 (280)
                      ++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+...      ...+.+.....        
T Consensus         6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-k~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   84 (259)
T PRK14260          6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFI-KTLNRISELEGPVKVEGVVDFFGQNIYDPRININ   84 (259)
T ss_pred             ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence            479999999999988899999999999999999999999999999 999997431      23333221110        


Q ss_pred             ccccccceeeeeccccc---------------------------ccccccCc----hHHHHHH--------------hhh
Q 023563          117 DTRYGLDSIVTHDGVKL---------------------------PCCALTTL----SSFRQKF--------------GSD  151 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l----~~~~~~~--------------a~a  151 (280)
                      ..+..++++++......                           ..+...++    .+..++.              |++
T Consensus        85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  164 (259)
T PRK14260         85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA  164 (259)
T ss_pred             hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence            11122334433211100                           00000111    1111111              678


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee-----c-ee
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT-----A-RC  219 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~-----~-~i  219 (280)
                      |+.+|++||||||++..      .+++.|+++++  ++|||++||+++++.+          +||++++|+     + ++
T Consensus       165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~----------~~d~i~~l~~~~~~~G~i  232 (259)
T PRK14260        165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATR----------VSDFTAFFSTDESRIGQM  232 (259)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH----------hcCeEEEEeccCCCCceE
Confidence            99999999999997654      47888888864  6899999999999986          999999997     5 88


Q ss_pred             ccccCcceee
Q 023563          220 EFCGKRAFFT  229 (280)
Q Consensus       220 ~~~g~~~~~~  229 (280)
                      +..|+++++.
T Consensus       233 ~~~~~~~~~~  242 (259)
T PRK14260        233 VEFGVTTQIF  242 (259)
T ss_pred             EEeCCHHHHh
Confidence            8889988876

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=8.2e-27  Score=210.70  Aligned_cols=166  Identities=14%  Similarity=0.080  Sum_probs=117.2

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------  116 (280)
                      ++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+.....        
T Consensus         9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   87 (264)
T PRK14243          9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTIL-RCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV   87 (264)
T ss_pred             eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHH-HHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence            489999999999988999999999999999999999999999999 99998742      223332211100        


Q ss_pred             ccccccceeeeeccccc---------c----------------cccccCch----HHHHH--------------Hhhhhc
Q 023563          117 DTRYGLDSIVTHDGVKL---------P----------------CCALTTLS----SFRQK--------------FGSDAY  153 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~~---------~----------------~~~~~~l~----~~~~~--------------~a~aL~  153 (280)
                      ..+..++++++......         .                .+...++.    ...++              .+++|+
T Consensus        88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~  167 (264)
T PRK14243         88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA  167 (264)
T ss_pred             HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            01122333333211000         0                00001111    01111              167899


Q ss_pred             cCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee---------c-
Q 023563          154 DQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT---------A-  217 (280)
Q Consensus       154 ~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~---------~-  217 (280)
                      .+|++||||||++.      ..++++|.++.+  +.|||++||+++++.+          +||++++|+         + 
T Consensus       168 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~----------~~d~v~~l~~~~~~~~~~~g  235 (264)
T PRK14243        168 VQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAAR----------VSDMTAFFNVELTEGGGRYG  235 (264)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHH----------hCCEEEEEecccccccccCc
Confidence            99999999999664      457888888865  5899999999999987          999999998         6 


Q ss_pred             eeccccCcceee
Q 023563          218 RCEFCGKRAFFT  229 (280)
Q Consensus       218 ~i~~~g~~~~~~  229 (280)
                      +++..|+++++.
T Consensus       236 ~i~~~~~~~~~~  247 (264)
T PRK14243        236 YLVEFDRTEKIF  247 (264)
T ss_pred             eEEEeCCHHHHH
Confidence            888888888876

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.1e-26  Score=211.45  Aligned_cols=167  Identities=17%  Similarity=0.159  Sum_probs=118.3

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCC-------c
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSN-------K  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~-------~  116 (280)
                      .++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|.|+..      ....+.+-...       .
T Consensus        19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   97 (276)
T PRK14271         19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFL-RTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL   97 (276)
T ss_pred             CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence            4589999999999999999999999999999999999999999999 99999743      12222221100       0


Q ss_pred             ccccccceeeeecccc---------c------------------ccccccCchH----HHHH--------------Hhhh
Q 023563          117 DTRYGLDSIVTHDGVK---------L------------------PCCALTTLSS----FRQK--------------FGSD  151 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~---------~------------------~~~~~~~l~~----~~~~--------------~a~a  151 (280)
                      ..+..+.++++.....         .                  ..+...++..    ...+              .|++
T Consensus        98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra  177 (276)
T PRK14271         98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART  177 (276)
T ss_pred             HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence            0111222333211100         0                  0001112211    1111              1678


Q ss_pred             hccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          152 AYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      |+.+|++||||||++.      ..+.+.|+++++  +.|||++||+++++.+          +||++++|++ +++..|+
T Consensus       178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~----------~~dri~~l~~G~i~~~g~  245 (276)
T PRK14271        178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAAR----------ISDRAALFFDGRLVEEGP  245 (276)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCC
Confidence            9999999999999654      457788888864  5899999999999876          9999999999 9999999


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      ++++.
T Consensus       246 ~~~~~  250 (276)
T PRK14271        246 TEQLF  250 (276)
T ss_pred             HHHHH
Confidence            88876

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.8e-27  Score=229.93  Aligned_cols=162  Identities=15%  Similarity=0.133  Sum_probs=113.7

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~  122 (280)
                      |+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-....       ..+..+
T Consensus         3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i   81 (501)
T PRK11288          3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLL-KILSGNYQPDAGSILIDGQEMRFASTTAALAAGV   81 (501)
T ss_pred             ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence            489999999999988899999999999999999999999999999 99999842 222222111100       011223


Q ss_pred             ceeeeecccccc------------------------------cccccCchHHHH------------H--HhhhhccCCCE
Q 023563          123 DSIVTHDGVKLP------------------------------CCALTTLSSFRQ------------K--FGSDAYDQVDV  158 (280)
Q Consensus       123 ~~v~~~~~~~~~------------------------------~~~~~~l~~~~~------------~--~a~aL~~~p~l  158 (280)
                      ++++|.......                              .+...++....+            +  +|++|+.+|++
T Consensus        82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l  161 (501)
T PRK11288         82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV  161 (501)
T ss_pred             EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence            333332111000                              000011110000            0  16789999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      ||||||++.+      .++++|++++++ |.|||++|||++++.+          +||++++|++ +++..++
T Consensus       162 llLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiiitHd~~~~~~----------~~d~i~~l~~G~i~~~~~  223 (501)
T PRK11288        162 IAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFA----------LCDAITVFKDGRYVATFD  223 (501)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEeecC
Confidence            9999997654      588888888765 9999999999999986          9999999999 8776554

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.1e-26  Score=210.82  Aligned_cols=167  Identities=11%  Similarity=0.081  Sum_probs=118.1

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------  116 (280)
                      .++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+ ++|+|+..      ....+.+-....       
T Consensus        22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~  100 (271)
T PRK14238         22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYI-KTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV  100 (271)
T ss_pred             ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence            3489999999999988899999999999999999999999999999 99999742      223332211100       


Q ss_pred             -ccccccceeeeeccccc--------------cc-------------cccc----CchHHHHHH--------------hh
Q 023563          117 -DTRYGLDSIVTHDGVKL--------------PC-------------CALT----TLSSFRQKF--------------GS  150 (280)
Q Consensus       117 -~~~~~~~~v~~~~~~~~--------------~~-------------~~~~----~l~~~~~~~--------------a~  150 (280)
                       ..+..++++++......              ..             +...    ++.+...+.              ++
T Consensus       101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar  180 (271)
T PRK14238        101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR  180 (271)
T ss_pred             HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence             01122333333211000              00             0000    011111111              56


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +|+.+|++||||||++..      .+.++|+++.+  +.|||++|||++++.+          +||++++|++ +++..|
T Consensus       181 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~----------~~d~i~~l~~G~i~~~g  248 (271)
T PRK14238        181 CLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAAR----------ISDKTAFFLNGYVNEYD  248 (271)
T ss_pred             HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHH----------hCCEEEEEECCEEEEeC
Confidence            899999999999996654      57888888864  7899999999999876          9999999999 998889


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       249 ~~~~~~  254 (271)
T PRK14238        249 DTDKIF  254 (271)
T ss_pred             CHHHHH
Confidence            888876

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.94  E-value=1.1e-26  Score=203.24  Aligned_cols=156  Identities=17%  Similarity=0.150  Sum_probs=106.4

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc----------ccccc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK----------DTRYG  121 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~----------~~~~~  121 (280)
                      +++ ||+|+|+++.+  |+||+|++ |+++|+||||||||||+ ++|+|+.. ....+.+-....          ..+..
T Consensus         2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   76 (214)
T cd03297           2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLL-RCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK   76 (214)
T ss_pred             cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence            455 89999999876  99999999 99999999999999999 99999732 222222111100          01122


Q ss_pred             cceeeeecccccc-------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563          122 LDSIVTHDGVKLP-------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGID  162 (280)
Q Consensus       122 ~~~v~~~~~~~~~-------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD  162 (280)
                      ++++++.......                         .+...++....++.              +++++.+|++||||
T Consensus        77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  156 (214)
T cd03297          77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLD  156 (214)
T ss_pred             EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            3333332111100                         01111121111111              56899999999999


Q ss_pred             CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      ||++..      .+.++|++++++.|+|||++|||++++.+          +||++++|++ +++..|
T Consensus       157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         157 EPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY----------LADRIVVMEDGRLQYIG  214 (214)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHH----------hcCEEEEEECCEEEecC
Confidence            997654      57888888877558999999999999876          9999999998 776543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.2e-27  Score=229.74  Aligned_cols=162  Identities=14%  Similarity=0.099  Sum_probs=113.3

Q ss_pred             EcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------ccccccceee
Q 023563           55 PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGLDSIV  126 (280)
Q Consensus        55 ~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~~~v~  126 (280)
                      ++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....       ..+..+++++
T Consensus         1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   79 (491)
T PRK10982          1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLL-KCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH   79 (491)
T ss_pred             CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence            47899999988999999999999999999999999999999 99999832 222222111100       0011222333


Q ss_pred             eeccccc------------------------------ccccccCchHHHHH--------------HhhhhccCCCEEEEe
Q 023563          127 THDGVKL------------------------------PCCALTTLSSFRQK--------------FGSDAYDQVDVIGID  162 (280)
Q Consensus       127 ~~~~~~~------------------------------~~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLD  162 (280)
                      |......                              ..+...++....++              .|++|+.+|++||||
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD  159 (491)
T PRK10982         80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD  159 (491)
T ss_pred             cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            2111000                              00001111111111              167899999999999


Q ss_pred             CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      ||++..      .++++|++++++ |.|||++|||++++.+          +||++++|++ +++..|+++++
T Consensus       160 EPt~~LD~~~~~~l~~~l~~l~~~-g~tvii~tH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        160 EPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQ----------LCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEeecChhhC
Confidence            997654      578888888765 9999999999999986          9999999999 99988887765

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=2.9e-27  Score=211.09  Aligned_cols=167  Identities=14%  Similarity=0.068  Sum_probs=124.4

Q ss_pred             ccEEEcCceEEeCC---------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCccccc
Q 023563           51 SMVSPRPPLFSLQN---------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRY  120 (280)
Q Consensus        51 ~~l~~~~ls~~y~~---------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~  120 (280)
                      ++++++|+++.|..         ..+++||||+|++||++||+|.||||||||. +++.|+.. .+..|.+-..+... .
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlg-r~i~~L~~pt~G~i~f~g~~i~~-~   80 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLG-RLILGLEEPTSGEILFEGKDITK-L   80 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHH-HHHHcCcCCCCceEEEcCcchhh-c
Confidence            58999999999942         3799999999999999999999999999999 99999854 44444433322110 0


Q ss_pred             ccceeeeecccccccccccCc-------------hHHHHHH--hhhhccCCCEEEEeCcccHH------HHHHHHHHHHh
Q 023563          121 GLDSIVTHDGVKLPCCALTTL-------------SSFRQKF--GSDAYDQVDVIGIDEAQFFE------DLYDFCREAAD  179 (280)
Q Consensus       121 ~~~~v~~~~~~~~~~~~~~~l-------------~~~~~~~--a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~  179 (280)
                      ..   ........+.+..+++             ...++++  ||||+.+|+++++|||++.+      +++++++++.+
T Consensus        81 ~~---~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~  157 (268)
T COG4608          81 SK---EERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE  157 (268)
T ss_pred             ch---hHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH
Confidence            00   0000001111111111             1222222  78999999999999997654      58899999999


Q ss_pred             hcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563          180 HDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK  232 (280)
Q Consensus       180 ~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~  232 (280)
                      +.|.|.+++|||+..+..          +||||.+|.. +++..|+.++++..+
T Consensus       158 ~~~lt~lFIsHDL~vv~~----------isdri~VMy~G~iVE~g~~~~~~~~p  201 (268)
T COG4608         158 ELGLTYLFISHDLSVVRY----------ISDRIAVMYLGKIVEIGPTEEVFSNP  201 (268)
T ss_pred             HhCCeEEEEEEEHHhhhh----------hcccEEEEecCceeEecCHHHHhhCC
Confidence            999999999999999997          9999999999 999999999988543

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.5e-26  Score=211.49  Aligned_cols=168  Identities=16%  Similarity=0.132  Sum_probs=117.5

Q ss_pred             CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCC-------
Q 023563           49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSN-------  115 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~-------  115 (280)
                      ..++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..      ....+.+-...       
T Consensus        36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~  114 (285)
T PRK14254         36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFL-RCINRMNDLIDAARVEGELTFRGKNVYDADVD  114 (285)
T ss_pred             CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCcccCCCCceEEEECCEEccccccc
Confidence            35689999999999988999999999999999999999999999999 99999842      23333221110       


Q ss_pred             -cccccccceeeeeccccc-------------------------ccccccCch----HHHHHH--------------hhh
Q 023563          116 -KDTRYGLDSIVTHDGVKL-------------------------PCCALTTLS----SFRQKF--------------GSD  151 (280)
Q Consensus       116 -~~~~~~~~~v~~~~~~~~-------------------------~~~~~~~l~----~~~~~~--------------a~a  151 (280)
                       ...+..+.+++|......                         ..+...++.    ...++.              +++
T Consensus       115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAra  194 (285)
T PRK14254        115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA  194 (285)
T ss_pred             hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHH
Confidence             011122333333211000                         001111111    111111              578


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEE-Eeec-eecccc
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVT-KLTA-RCEFCG  223 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~-~L~~-~i~~~g  223 (280)
                      |+.+|++||||||++.+      .++++|+++++  +.|||++|||++++.+          +||+++ +|++ +++..|
T Consensus       195 L~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~----------~~dri~v~l~~G~i~~~g  262 (285)
T PRK14254        195 IAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAAR----------ISDKTAVFLTGGELVEFD  262 (285)
T ss_pred             HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHh----------hcCEEEEEeeCCEEEEeC
Confidence            99999999999997654      47888888875  4799999999999886          999975 5788 888888


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       263 ~~~~~~  268 (285)
T PRK14254        263 DTDKIF  268 (285)
T ss_pred             CHHHHH
Confidence            887765

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.3e-26  Score=209.29  Aligned_cols=166  Identities=10%  Similarity=0.082  Sum_probs=117.7

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------  116 (280)
                      ++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+-....        
T Consensus        15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~   93 (265)
T PRK14252         15 QKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFL-RCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD   93 (265)
T ss_pred             ceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence            479999999999988999999999999999999999999999999 99999742      122333221110        


Q ss_pred             --ccccccceeeeeccccc---------------------------ccccccCc----hHHHHH--------------Hh
Q 023563          117 --DTRYGLDSIVTHDGVKL---------------------------PCCALTTL----SSFRQK--------------FG  149 (280)
Q Consensus       117 --~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l----~~~~~~--------------~a  149 (280)
                        ..+..++++++......                           ..+...++    .....+              .+
T Consensus        94 ~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  173 (265)
T PRK14252         94 PIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA  173 (265)
T ss_pred             HHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHH
Confidence              11222333333211000                           00001111    011111              15


Q ss_pred             hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      ++|+.+|++||||||++..      .+.+.|+++++  +.|||++||+++++.+          +||++++|++ +++..
T Consensus       174 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~----------~~d~i~~l~~G~i~~~  241 (265)
T PRK14252        174 RALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAAR----------VSDYTAYMYMGELIEF  241 (265)
T ss_pred             HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEe
Confidence            7899999999999997544      57888888864  6899999999999976          9999999999 99888


Q ss_pred             cCcceee
Q 023563          223 GKRAFFT  229 (280)
Q Consensus       223 g~~~~~~  229 (280)
                      |+++++.
T Consensus       242 g~~~~~~  248 (265)
T PRK14252        242 GATDTIF  248 (265)
T ss_pred             CCHHHHH
Confidence            8887765

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.3e-26  Score=207.52  Aligned_cols=164  Identities=12%  Similarity=0.054  Sum_probs=116.1

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------cc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------DT  118 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------~~  118 (280)
                      -+++|++++|+++.+|+|+||+|.+||+++|+||||||||||+ ++|+|+..      ....+.+.....        ..
T Consensus         6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   84 (251)
T PRK14244          6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFL-RCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL   84 (251)
T ss_pred             EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence            4689999999988999999999999999999999999999999 99999742      133333211110        01


Q ss_pred             ccccceeeeeccccc----------------------------ccccccCchH----HHHH--------------Hhhhh
Q 023563          119 RYGLDSIVTHDGVKL----------------------------PCCALTTLSS----FRQK--------------FGSDA  152 (280)
Q Consensus       119 ~~~~~~v~~~~~~~~----------------------------~~~~~~~l~~----~~~~--------------~a~aL  152 (280)
                      +..++++++......                            ..+...++..    ...+              .++++
T Consensus        85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral  164 (251)
T PRK14244         85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI  164 (251)
T ss_pred             hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence            122333333211000                            0011112211    1111              15789


Q ss_pred             ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563          153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR  225 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~  225 (280)
                      +.+|++||||||++.+      .+++.|+++. + |+|||++|||++++.+          +||++++|++ +++..|++
T Consensus       165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~----------~~d~i~~l~~G~i~~~~~~  232 (251)
T PRK14244        165 AVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKK----------VSDRVAFFQSGRIVEYNTT  232 (251)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHh----------hcCEEEEEECCEEEEeCCH
Confidence            9999999999997644      4788888874 3 8999999999999876          8999999999 99888888


Q ss_pred             ceee
Q 023563          226 AFFT  229 (280)
Q Consensus       226 ~~~~  229 (280)
                      +++.
T Consensus       233 ~~~~  236 (251)
T PRK14244        233 QEIF  236 (251)
T ss_pred             HHHh
Confidence            8776

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.94  E-value=9.9e-27  Score=228.61  Aligned_cols=169  Identities=16%  Similarity=0.139  Sum_probs=120.7

Q ss_pred             CccEEEcCceEEeC-----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEe-cCC------c
Q 023563           50 HSMVSPRPPLFSLQ-----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVI-KSN------K  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~-----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~-~~~------~  116 (280)
                      .++|+++|++++|+     ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+- ...      .
T Consensus       277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~l~Gl~~p~~G~i~~~~g~~~~~~~~~  355 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLS-KIIAGVLEPTSGEVNVRVGDEWVDMTKP  355 (520)
T ss_pred             CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEEecCCcccccccc
Confidence            45899999999994     25799999999999999999999999999999 99999842 23333321 100      0


Q ss_pred             ------ccccccceeeeecccc--------------------------cccccccCchH-----HHHHH-----------
Q 023563          117 ------DTRYGLDSIVTHDGVK--------------------------LPCCALTTLSS-----FRQKF-----------  148 (280)
Q Consensus       117 ------~~~~~~~~v~~~~~~~--------------------------~~~~~~~~l~~-----~~~~~-----------  148 (280)
                            ..+..+++++|.....                          ...+...++..     +.++.           
T Consensus       356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr  435 (520)
T TIGR03269       356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR  435 (520)
T ss_pred             chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence                  0011233333321100                          00111123321     22221           


Q ss_pred             ---hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563          149 ---GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R  218 (280)
Q Consensus       149 ---a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~  218 (280)
                         |++|+.+|++||||||++.+      .++++|++++++.|.|||++|||++++.+          +||++++|++ +
T Consensus       436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~----------~~d~i~~l~~G~  505 (520)
T TIGR03269       436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLD----------VCDRAALMRDGK  505 (520)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHH----------hCCEEEEEECCE
Confidence               67899999999999997654      48888888877669999999999999986          9999999999 8


Q ss_pred             eccccCcceee
Q 023563          219 CEFCGKRAFFT  229 (280)
Q Consensus       219 i~~~g~~~~~~  229 (280)
                      +++.|+++++.
T Consensus       506 i~~~g~~~~~~  516 (520)
T TIGR03269       506 IVKIGDPEEIV  516 (520)
T ss_pred             EEEECCHHHHH
Confidence            88888887664

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=1.3e-26  Score=201.59  Aligned_cols=152  Identities=20%  Similarity=0.145  Sum_probs=104.0

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----ccccccccee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDSI  125 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~v  125 (280)
                      ||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...     ...+..+.++
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~   79 (204)
T PRK13538          1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLL-RILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL   79 (204)
T ss_pred             CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence            58999999999998999999999999999999999999999999 99999732 22222111100     0011112222


Q ss_pred             eeeccc------------------------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH
Q 023563          126 VTHDGV------------------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF  167 (280)
Q Consensus       126 ~~~~~~------------------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~  167 (280)
                      +++...                        ....+...++..+.++.              +++++.+|++||||||++.
T Consensus        80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  159 (204)
T PRK13538         80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA  159 (204)
T ss_pred             CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            221100                        00111122332222211              5789999999999999664


Q ss_pred             H------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563          168 E------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL  215 (280)
Q Consensus       168 ~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L  215 (280)
                      .      .++++|++++++ |.|||++|||++++.+          ..+|++++
T Consensus       160 LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~i~~----------~~~~~~~~  202 (204)
T PRK13538        160 IDKQGVARLEALLAQHAEQ-GGMVILTTHQDLPVAS----------DKVRKLRL  202 (204)
T ss_pred             CCHHHHHHHHHHHHHHHHC-CCEEEEEecChhhhcc----------CCceEEec
Confidence            4      578888888765 8999999999999975          67788776

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.7e-26  Score=207.96  Aligned_cols=168  Identities=14%  Similarity=0.155  Sum_probs=117.9

Q ss_pred             CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CC-----eeEEEecCC------
Q 023563           49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KG-----RNVAVIKSN------  115 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g-----~~i~~~~~~------  115 (280)
                      ..|+|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||+ ++|+|+..  .|     ..+.+...+      
T Consensus         7 ~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~   85 (257)
T PRK14246          7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLL-KVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA   85 (257)
T ss_pred             hhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence            46799999999999999999999999999999999999999999999 99999843  11     111110000      


Q ss_pred             cccccccceeeeecccc----------------------------cccccccCch----HHHHH--------------Hh
Q 023563          116 KDTRYGLDSIVTHDGVK----------------------------LPCCALTTLS----SFRQK--------------FG  149 (280)
Q Consensus       116 ~~~~~~~~~v~~~~~~~----------------------------~~~~~~~~l~----~~~~~--------------~a  149 (280)
                      ...+..+++++++....                            ...+...++.    +...+              .+
T Consensus        86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la  165 (257)
T PRK14246         86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA  165 (257)
T ss_pred             HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHH
Confidence            00112222222211100                            0000111221    01111              16


Q ss_pred             hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      ++++.+|++||||||+..+      .+.+.|.++++  +.|||++||+++++.+          +||++++|++ +++..
T Consensus       166 ral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~~~----------~~d~v~~l~~g~i~~~  233 (257)
T PRK14246        166 RALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVAR----------VADYVAFLYNGELVEW  233 (257)
T ss_pred             HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHHHH----------hCCEEEEEECCEEEEE
Confidence            7899999999999997644      47788888754  6899999999999976          9999999999 99999


Q ss_pred             cCcceee
Q 023563          223 GKRAFFT  229 (280)
Q Consensus       223 g~~~~~~  229 (280)
                      |+++++.
T Consensus       234 g~~~~~~  240 (257)
T PRK14246        234 GSSNEIF  240 (257)
T ss_pred             CCHHHHH
Confidence            9888776

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.94  E-value=1.6e-26  Score=200.68  Aligned_cols=148  Identities=19%  Similarity=0.164  Sum_probs=101.4

Q ss_pred             EcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------c---ccccccc
Q 023563           55 PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------K---DTRYGLD  123 (280)
Q Consensus        55 ~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------~---~~~~~~~  123 (280)
                      ++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+....       .   ..+..++
T Consensus         1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   79 (206)
T TIGR03608         1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLL-NIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG   79 (206)
T ss_pred             CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence            47999999988999999999999999999999999999999 99999742 22222221111       0   0112233


Q ss_pred             eeeeecccccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563          124 SIVTHDGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGID  162 (280)
Q Consensus       124 ~v~~~~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD  162 (280)
                      ++++.......                           .+...++....++.              +++|+.+|++||||
T Consensus        80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD  159 (206)
T TIGR03608        80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD  159 (206)
T ss_pred             EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            33332111000                           01111121111111              56899999999999


Q ss_pred             CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563          163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL  215 (280)
Q Consensus       163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L  215 (280)
                      ||++..      .+.+.|+++.++ |.|+|++||+++.+.           +||++++|
T Consensus       160 EPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~-----------~~d~i~~l  206 (206)
T TIGR03608       160 EPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVAK-----------QADRVIEL  206 (206)
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHh-----------hcCEEEeC
Confidence            996544      588888888765 999999999999763           79999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.94  E-value=2.6e-26  Score=203.88  Aligned_cols=165  Identities=15%  Similarity=0.111  Sum_probs=115.2

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc----ccccccceeee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK----DTRYGLDSIVT  127 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~----~~~~~~~~v~~  127 (280)
                      |+++|++++|+++ +|+|+||+|.+||+++|+||||||||||+ ++|+|+.. ....+.+.....    ..+..+.++++
T Consensus         1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl-~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q   78 (235)
T cd03299           1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLL-ETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ   78 (235)
T ss_pred             CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence            4689999999875 89999999999999999999999999999 99999732 222222111100    00112222322


Q ss_pred             eccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563          128 HDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF  166 (280)
Q Consensus       128 ~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~  166 (280)
                      ......                           ..+...++..+.++.              +++++.+|++|+||||++
T Consensus        79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~  158 (235)
T cd03299          79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFS  158 (235)
T ss_pred             cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcc
Confidence            211100                           001111222222111              568999999999999965


Q ss_pred             H------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          167 F------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       167 ~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      .      ..+++.|++++.+.|.|+|++||+++++.+          +||++++|++ +++..|+++++.
T Consensus       159 gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~  218 (235)
T cd03299         159 ALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWA----------LADKVAIMLNGKLIQVGKPEEVF  218 (235)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEecCHHHHH
Confidence            4      457888888876559999999999999876          8999999999 988888887765

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.94  E-value=1e-26  Score=211.59  Aligned_cols=164  Identities=12%  Similarity=0.041  Sum_probs=115.4

Q ss_pred             EEEcCceEEe--CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe-------------------eEEE
Q 023563           53 VSPRPPLFSL--QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR-------------------NVAV  111 (280)
Q Consensus        53 l~~~~ls~~y--~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~-------------------~i~~  111 (280)
                      |+++|++++|  ++..+|+|+||+|++||+++|+||||||||||+ ++|.|+.....                   .+++
T Consensus         3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl-~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (275)
T cd03289           3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLL-SAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGV   81 (275)
T ss_pred             EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEE
Confidence            7899999999  457799999999999999999999999999999 99999743222                   2344


Q ss_pred             ecCCccccc-ccceee---e--ecccccccccccCchHHHHH-------------------------HhhhhccCCCEEE
Q 023563          112 IKSNKDTRY-GLDSIV---T--HDGVKLPCCALTTLSSFRQK-------------------------FGSDAYDQVDVIG  160 (280)
Q Consensus       112 ~~~~~~~~~-~~~~v~---~--~~~~~~~~~~~~~l~~~~~~-------------------------~a~aL~~~p~lLl  160 (280)
                      ++|+..... .+...+   .  ........+...++..+.++                         .++|++.+|++||
T Consensus        82 v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ill  161 (275)
T cd03289          82 IPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL  161 (275)
T ss_pred             ECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            444322100 000000   0  00000011112233332222                         1678999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      ||||++..      .+.+.|+++. + ++|||++||+++++.           .||+|++|++ +++..|+|+++..
T Consensus       162 lDEpts~LD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~-----------~~dri~vl~~G~i~~~g~~~~l~~  225 (275)
T cd03289         162 LDEPSAHLDPITYQVIRKTLKQAF-A-DCTVILSEHRIEAML-----------ECQRFLVIEENKVRQYDSIQKLLN  225 (275)
T ss_pred             EECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEECCHHHHH-----------hCCEEEEecCCeEeecCCHHHHhh
Confidence            99997654      3667777653 3 899999999999875           6999999999 9999999999873

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.94  E-value=2.3e-26  Score=204.46  Aligned_cols=152  Identities=20%  Similarity=0.187  Sum_probs=102.4

Q ss_pred             EEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccccceeeeeccccc
Q 023563           60 FSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDSIVTHDGVKL  133 (280)
Q Consensus        60 ~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~v~~~~~~~~  133 (280)
                      +.|+.+.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....     ...+..+++++++.....
T Consensus        29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  107 (236)
T cd03267          29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTL-KILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW  107 (236)
T ss_pred             cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence            667778899999999999999999999999999999 99999732 22222111100     001111222221110000


Q ss_pred             ----------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH---
Q 023563          134 ----------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE---  168 (280)
Q Consensus       134 ----------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~---  168 (280)
                                                  ..+...++....++.              +++|+.+|++||||||++..   
T Consensus       108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~  187 (236)
T cd03267         108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV  187 (236)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence                                        001111222211111              56899999999999996644   


Q ss_pred             ---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          169 ---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       169 ---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                         .+.++|++++++.|.|||++||+++++.+          +||++++|++ ++++.
T Consensus       188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~~~  235 (236)
T cd03267         188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEA----------LARRVLVIDKGRLLYD  235 (236)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHH----------hCCEEEEEeCCEEEec
Confidence               58888888876558999999999999876          9999999998 77654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.94  E-value=5.1e-26  Score=194.37  Aligned_cols=137  Identities=19%  Similarity=0.086  Sum_probs=101.4

Q ss_pred             cCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcccccccceeeeecccccc
Q 023563           56 RPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRYGLDSIVTHDGVKLP  134 (280)
Q Consensus        56 ~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~  134 (280)
                      .|++++|+++.+++++ |+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..      .+.++.+...    
T Consensus         4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~------~i~~~~q~~~----   71 (177)
T cd03222           4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAV-KILAGQLIPNGDNDEWDGI------TPVYKPQYID----   71 (177)
T ss_pred             CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCcEEEECCE------EEEEEcccCC----
Confidence            6899999999999985 99999999999999999999999 99999743 3333332110      1122222111    


Q ss_pred             cccccCchHHHHHHhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc
Q 023563          135 CCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL  208 (280)
Q Consensus       135 ~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~  208 (280)
                         +.+=...+-..|++++.+|+++|||||++..      .+.+.+.+++++.+.|||++|||++++.+          +
T Consensus        72 ---LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~----------~  138 (177)
T cd03222          72 ---LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY----------L  138 (177)
T ss_pred             ---CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH----------h
Confidence               1111112222378999999999999996644      47788888876534999999999999986          8


Q ss_pred             cceEEEeec
Q 023563          209 ADSVTKLTA  217 (280)
Q Consensus       209 aD~i~~L~~  217 (280)
                      ||++++|++
T Consensus       139 ~d~i~~l~~  147 (177)
T cd03222         139 SDRIHVFEG  147 (177)
T ss_pred             CCEEEEEcC
Confidence            999999988

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.2e-26  Score=227.48  Aligned_cols=168  Identities=14%  Similarity=0.065  Sum_probs=118.6

Q ss_pred             CccEEEcCceEEeC---CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCc-------c
Q 023563           50 HSMVSPRPPLFSLQ---NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNK-------D  117 (280)
Q Consensus        50 ~~~l~~~~ls~~y~---~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~-------~  117 (280)
                      .++|+++|++++|+   ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..  ....+.+.....       .
T Consensus       257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~  335 (506)
T PRK13549        257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELV-QCLFGAYPGRWEGEIFIDGKPVKIRNPQQA  335 (506)
T ss_pred             CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHH-HHHhCCCCCCCCcEEEECCEECCCCCHHHH
Confidence            45899999999993   46799999999999999999999999999999 99999843  233332211100       0


Q ss_pred             cccccceeeeecc---cc--------------------------------cccccccCch-HHHHHH-------------
Q 023563          118 TRYGLDSIVTHDG---VK--------------------------------LPCCALTTLS-SFRQKF-------------  148 (280)
Q Consensus       118 ~~~~~~~v~~~~~---~~--------------------------------~~~~~~~~l~-~~~~~~-------------  148 (280)
                      .+..+++++|...   ..                                ...+...++. ...++.             
T Consensus       336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~  415 (506)
T PRK13549        336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAV  415 (506)
T ss_pred             HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHH
Confidence            0112233332210   00                                0001111121 111111             


Q ss_pred             -hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563          149 -GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       149 -a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                       |++++.+|++||||||++.+      .++++|.+++++ |+|||++|||++++.+          +||++++|++ +++
T Consensus       416 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~----------~~d~v~~l~~G~i~  484 (506)
T PRK13549        416 LAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLG----------LSDRVLVMHEGKLK  484 (506)
T ss_pred             HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEE
Confidence             56899999999999997654      478889988876 9999999999999986          9999999999 998


Q ss_pred             cccCcceee
Q 023563          221 FCGKRAFFT  229 (280)
Q Consensus       221 ~~g~~~~~~  229 (280)
                      +.|+++++.
T Consensus       485 ~~~~~~~~~  493 (506)
T PRK13549        485 GDLINHNLT  493 (506)
T ss_pred             EEeccccCC
Confidence            888887763

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.94  E-value=4.6e-27  Score=209.01  Aligned_cols=156  Identities=21%  Similarity=0.205  Sum_probs=109.8

Q ss_pred             eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCccc-----ccccceeeeec-ccc--ccc-
Q 023563           66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDT-----RYGLDSIVTHD-GVK--LPC-  135 (280)
Q Consensus        66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~-----~~~~~~v~~~~-~~~--~~~-  135 (280)
                      .+++||||+|++|+++|++|||||||||++ +++.|+.. .+..+....-.+..     ...++.++.+. ...  .+. 
T Consensus        38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtL-KmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~  116 (325)
T COG4586          38 EAVQDISFEIPKGEIVGFLGANGAGKSTTL-KMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL  116 (325)
T ss_pred             hhhheeeeecCCCcEEEEEcCCCCcchhhH-HHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence            589999999999999999999999999999 99999844 33333322211111     11122222111 000  000 


Q ss_pred             ------------------------ccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HHH
Q 023563          136 ------------------------CALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLY  171 (280)
Q Consensus       136 ------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~  171 (280)
                                              ..+.++..+.+..              +.+|+++|++|+|||||..+      .++
T Consensus       117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir  196 (325)
T COG4586         117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR  196 (325)
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence                                    1112222222211              45799999999999997654      488


Q ss_pred             HHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563          172 DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK  232 (280)
Q Consensus       172 ~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~  232 (280)
                      +.+++..++++.||+++||+++.+.+          +||||++|+. +++++|+.+++..++
T Consensus       197 ~Flke~n~~~~aTVllTTH~~~di~~----------lc~rv~~I~~Gqlv~dg~l~~l~~~f  248 (325)
T COG4586         197 EFLKEYNEERQATVLLTTHIFDDIAT----------LCDRVLLIDQGQLVFDGTLAQLQEQF  248 (325)
T ss_pred             HHHHHHHHhhCceEEEEecchhhHHH----------hhhheEEeeCCcEeecccHHHHHHHh
Confidence            99999999899999999999999887          9999999999 999999887776443

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.94  E-value=2e-26  Score=204.42  Aligned_cols=163  Identities=18%  Similarity=0.188  Sum_probs=112.4

Q ss_pred             EEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEE
Q 023563           53 VSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVA  110 (280)
Q Consensus        53 l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~  110 (280)
                      |+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+ ++|+|+..        +|.            .++
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLT-KLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG   79 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence            478999999963  5799999999999999999999999999999 99999732        121            244


Q ss_pred             EecCCcccc-cccceeee--eccc----ccccccccCchHHHH-----------------------H--HhhhhccCCCE
Q 023563          111 VIKSNKDTR-YGLDSIVT--HDGV----KLPCCALTTLSSFRQ-----------------------K--FGSDAYDQVDV  158 (280)
Q Consensus       111 ~~~~~~~~~-~~~~~v~~--~~~~----~~~~~~~~~l~~~~~-----------------------~--~a~aL~~~p~l  158 (280)
                      +++|+.... ..+...+.  ....    ........++.++.+                       +  .+++++.+|++
T Consensus        80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l  159 (237)
T cd03252          80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI  159 (237)
T ss_pred             EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence            444432110 00000000  0000    000000011111111                       1  16789999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||++..      .+++.|++++ + |+|||++|||++++.           .||++++|++ +++..|+++++.
T Consensus       160 lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-----------~~d~v~~l~~G~i~~~~~~~~~~  224 (237)
T cd03252         160 LIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-----------NADRIIVMEKGRIVEQGSHDELL  224 (237)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEEcCHHHHH
Confidence            9999997654      5788888885 4 899999999999884           6999999999 999888887765

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.94  E-value=7.3e-26  Score=187.02  Aligned_cols=135  Identities=21%  Similarity=0.202  Sum_probs=99.9

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcccccccceeeeeccc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRYGLDSIVTHDGV  131 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~~~~~v~~~~~~  131 (280)
                      |+++|++++|++..+++++||++++||+++|+||||||||||+ ++|.|+.. ....+.+ ..    ...+.++++    
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~-~~----~~~i~~~~~----   70 (144)
T cd03221           1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLL-KLIAGELEPDEGIVTW-GS----TVKIGYFEQ----   70 (144)
T ss_pred             CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHH-HHHcCCCCCCceEEEE-CC----eEEEEEEcc----
Confidence            4789999999888899999999999999999999999999999 99999853 2333332 11    112222222    


Q ss_pred             ccccccccCchHHHHHHhhhhccCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCcccc
Q 023563          132 KLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDI  205 (280)
Q Consensus       132 ~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~l  205 (280)
                            +..=...+-..+++++.+|+++|+|||++..|      +.+.++++    +.|++++||+++++.+        
T Consensus        71 ------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~--------  132 (144)
T cd03221          71 ------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQ--------  132 (144)
T ss_pred             ------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHH--------
Confidence                  11111112223789999999999999976543      44555443    6799999999999976        


Q ss_pred             ccccceEEEeec
Q 023563          206 IPLADSVTKLTA  217 (280)
Q Consensus       206 l~~aD~i~~L~~  217 (280)
                        +||++++|++
T Consensus       133 --~~d~v~~l~~  142 (144)
T cd03221         133 --VATKIIELED  142 (144)
T ss_pred             --hCCEEEEEeC
Confidence              8999999976

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.94  E-value=2e-26  Score=203.41  Aligned_cols=159  Identities=21%  Similarity=0.150  Sum_probs=109.5

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------ccc--cccc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------KDT--RYGL  122 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------~~~--~~~~  122 (280)
                      +.+++++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-...       ...  ...+
T Consensus        23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv  101 (224)
T cd03220          23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLL-RLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTG  101 (224)
T ss_pred             hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEchhhcccccCCCCCcH
Confidence            7899999999999999999999999999999999999999999 99999732 22222211100       000  0000


Q ss_pred             ceeee---e-cc--------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HH
Q 023563          123 DSIVT---H-DG--------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DL  170 (280)
Q Consensus       123 ~~v~~---~-~~--------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i  170 (280)
                      ...+.   . ..        .....+...++....++.              +++++.+|++||||||++..      .+
T Consensus       102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~  181 (224)
T cd03220         102 RENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC  181 (224)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            00000   0 00        000011111222222111              67899999999999996654      47


Q ss_pred             HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          171 YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       171 ~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      ++.|++++++ |.|||++||+++++.+          +||++++|++ +++..|
T Consensus       182 ~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         182 QRRLRELLKQ-GKTVILVSHDPSSIKR----------LCDRALVLEKGKIRFDG  224 (224)
T ss_pred             HHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEecC
Confidence            8888888776 8999999999999876          8999999998 776544

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.4e-26  Score=215.66  Aligned_cols=166  Identities=13%  Similarity=0.146  Sum_probs=117.2

Q ss_pred             ccEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc------
Q 023563           51 SMVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------  116 (280)
                      .+|+++|++++|.  ...+|+|+||+|++||++||+||||||||||+ ++|.|+..      ....+.+...+.      
T Consensus        79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl-~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~  157 (329)
T PRK14257         79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFL-RNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS  157 (329)
T ss_pred             ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceEEEECCEEccccccc
Confidence            4899999999994  45799999999999999999999999999999 99999742      122222111110      


Q ss_pred             --ccccccceeeeecccc---------c------------------ccccccCc----hHHHHH--------------Hh
Q 023563          117 --DTRYGLDSIVTHDGVK---------L------------------PCCALTTL----SSFRQK--------------FG  149 (280)
Q Consensus       117 --~~~~~~~~v~~~~~~~---------~------------------~~~~~~~l----~~~~~~--------------~a  149 (280)
                        ..+..+++++|.....         +                  ..+...++    .....+              .|
T Consensus       158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA  237 (329)
T PRK14257        158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA  237 (329)
T ss_pred             hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence              1122233333321100         0                  00000111    001111              16


Q ss_pred             hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      ||++.+|++||||||++..      .+.+.|+++.+  ++|+|++||+++++.+          +||+|++|++ +++..
T Consensus       238 RAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~----------~~Driivl~~G~i~e~  305 (329)
T PRK14257        238 RAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQR----------ISDETVFFYQGWIEEA  305 (329)
T ss_pred             HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEe
Confidence            7899999999999997654      47788887764  6999999999999976          8999999999 99999


Q ss_pred             cCcceee
Q 023563          223 GKRAFFT  229 (280)
Q Consensus       223 g~~~~~~  229 (280)
                      |++.+++
T Consensus       306 g~~~~l~  312 (329)
T PRK14257        306 GETKTIF  312 (329)
T ss_pred             CCHHHHh
Confidence            9999987

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.94  E-value=6.4e-26  Score=198.32  Aligned_cols=159  Identities=13%  Similarity=0.201  Sum_probs=108.3

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceeee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIVT  127 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~~  127 (280)
                      ++++|++++|++  +++|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-..+    ...+..++++++
T Consensus         1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q   77 (213)
T TIGR01277         1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLL-NLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ   77 (213)
T ss_pred             CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence            478999999974  57899999999999999999999999999 99999732 11112111100    001111222222


Q ss_pred             ecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563          128 HDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF  166 (280)
Q Consensus       128 ~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~  166 (280)
                      .....                           ...+...++.++.++.              +++++.+|++||||||++
T Consensus        78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~  157 (213)
T TIGR01277        78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFS  157 (213)
T ss_pred             cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence            11100                           0011112222222211              568999999999999966


Q ss_pred             HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      ..      .++++|.++.++.|.|||++||+++++.+          +||++++|++ +++..|+
T Consensus       158 ~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~----------~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       158 ALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARA----------IASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh----------hcCeEEEEECCeEEEecC
Confidence            54      57888888876558999999999999876          8999999998 8876653

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.94  E-value=2.2e-26  Score=203.59  Aligned_cols=163  Identities=15%  Similarity=0.144  Sum_probs=111.3

Q ss_pred             EEEcCceEEeCCe--eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee-------------------EE
Q 023563           53 VSPRPPLFSLQNR--NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN-------------------VA  110 (280)
Q Consensus        53 l~~~~ls~~y~~~--~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~-------------------i~  110 (280)
                      |+++|++++|+++  .+++++||+|++|++++|+||||||||||+ ++|+|+.. ....                   ++
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLV-NLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG   79 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            4789999999765  799999999999999999999999999999 99999832 2222                   33


Q ss_pred             EecCCcccc-cccceeee--eccc----ccccccccCchHHH-----------------------HH--HhhhhccCCCE
Q 023563          111 VIKSNKDTR-YGLDSIVT--HDGV----KLPCCALTTLSSFR-----------------------QK--FGSDAYDQVDV  158 (280)
Q Consensus       111 ~~~~~~~~~-~~~~~v~~--~~~~----~~~~~~~~~l~~~~-----------------------~~--~a~aL~~~p~l  158 (280)
                      +++|+.... ..+...+.  ....    ........++..+.                       .+  .+++|+.+|++
T Consensus        80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  159 (234)
T cd03251          80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI  159 (234)
T ss_pred             EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            333322110 00000000  0000    00000000111111                       11  16789999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||++..      .+.+.|+++. + +.|||++|||++++.           .||++++|++ +++..|+++++.
T Consensus       160 llLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-----------~~d~v~~l~~G~i~~~~~~~~~~  224 (234)
T cd03251         160 LILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIE-----------NADRIVVLEDGKIVERGTHEELL  224 (234)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-----------hCCEEEEecCCeEeeeCCHHHHH
Confidence            9999997654      4788888885 3 899999999999885           5999999999 888888887765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.94  E-value=2.9e-26  Score=201.03  Aligned_cols=156  Identities=21%  Similarity=0.247  Sum_probs=107.0

Q ss_pred             EEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEE
Q 023563           53 VSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVA  110 (280)
Q Consensus        53 l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~  110 (280)
                      |+++|++++|++  +.+++|+||+|++|++++|+||||||||||+ ++|.|+..        .|.            .++
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   81 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLL-KLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG   81 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence            789999999975  5799999999999999999999999999999 99999732        121            234


Q ss_pred             EecCCccccc-ccceeee---ec-c--cccccccccCchHHHHH-------------------------HhhhhccCCCE
Q 023563          111 VIKSNKDTRY-GLDSIVT---HD-G--VKLPCCALTTLSSFRQK-------------------------FGSDAYDQVDV  158 (280)
Q Consensus       111 ~~~~~~~~~~-~~~~v~~---~~-~--~~~~~~~~~~l~~~~~~-------------------------~a~aL~~~p~l  158 (280)
                      +++|...... .+...+.   .. .  .....+...++.++.++                         .+++++.+|++
T Consensus        82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l  161 (220)
T cd03245          82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI  161 (220)
T ss_pred             EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            4444322100 0000000   00 0  00011112233332221                         16789999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      ||||||++.+      .+++.|+++++  +.|||++|||++++ +          +||++++|++ +++..
T Consensus       162 lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~-~----------~~d~v~~l~~g~i~~~  219 (220)
T cd03245         162 LLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLL-D----------LVDRIIVMDSGRIVAD  219 (220)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH-H----------hCCEEEEEeCCeEeec
Confidence            9999997654      47788888765  48999999999986 4          8999999998 76543

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=5.6e-26  Score=203.18  Aligned_cols=165  Identities=11%  Similarity=0.094  Sum_probs=116.9

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------c
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------D  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------~  117 (280)
                      +|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+.....        .
T Consensus         3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~   81 (250)
T PRK14266          3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFI-RTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE   81 (250)
T ss_pred             EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence            58999999999988899999999999999999999999999999 99998631      222332221110        0


Q ss_pred             cccccceeeeeccccc---------c------------------cccccCch----HHHHHH--------------hhhh
Q 023563          118 TRYGLDSIVTHDGVKL---------P------------------CCALTTLS----SFRQKF--------------GSDA  152 (280)
Q Consensus       118 ~~~~~~~v~~~~~~~~---------~------------------~~~~~~l~----~~~~~~--------------a~aL  152 (280)
                      .+..+++++++.....         .                  .+...++.    ...++.              ++++
T Consensus        82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral  161 (250)
T PRK14266         82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI  161 (250)
T ss_pred             HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence            1122333333211100         0                  00011111    111111              5789


Q ss_pred             ccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563          153 YDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR  225 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~  225 (280)
                      +.+|++||||||++.      ..+.++|++++ + +.|||++||+++++.+          +||++++|++ +++..|++
T Consensus       162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~----------~~~~i~~l~~G~i~~~g~~  229 (250)
T PRK14266        162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATR----------VSKYTSFFLNGEIIESGLT  229 (250)
T ss_pred             HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHh----------hcCEEEEEECCeEEEeCCH
Confidence            999999999999654      45788888885 3 7899999999999986          9999999999 99999998


Q ss_pred             ceee
Q 023563          226 AFFT  229 (280)
Q Consensus       226 ~~~~  229 (280)
                      +++.
T Consensus       230 ~~~~  233 (250)
T PRK14266        230 DQIF  233 (250)
T ss_pred             HHHH
Confidence            8875

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.94  E-value=9.7e-26  Score=196.07  Aligned_cols=160  Identities=18%  Similarity=0.096  Sum_probs=109.5

Q ss_pred             cEEEcCceEEeC----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----CCeeEEEecCCc-----cc
Q 023563           52 MVSPRPPLFSLQ----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----KGRNVAVIKSNK-----DT  118 (280)
Q Consensus        52 ~l~~~~ls~~y~----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~g~~i~~~~~~~-----~~  118 (280)
                      .+.++||+|.|+    ++.+|+++||+|++||+++|+||||||||||+ ++|+|+..    ....+.+...+.     ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~   81 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLL-KALANRTEGNVSVEGDIHYNGIPYKEFAEKY   81 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHH-HHhcccCCCCCCcceEEEECCEECccchhhh
Confidence            588999999994    56899999999999999999999999999999 99999854    333443322111     11


Q ss_pred             ccccceeeeecccccccccccC---------------ch-HHHH--HHhhhhccCCCEEEEeCcccH------HHHHHHH
Q 023563          119 RYGLDSIVTHDGVKLPCCALTT---------------LS-SFRQ--KFGSDAYDQVDVIGIDEAQFF------EDLYDFC  174 (280)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~~~~~---------------l~-~~~~--~~a~aL~~~p~lLlLDEP~~~------~~i~~~l  174 (280)
                      +..+.++++............+               ++ ....  ..|++|+.+|++||||||++.      ..++++|
T Consensus        82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l  161 (202)
T cd03233          82 PGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCI  161 (202)
T ss_pred             cceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            2234445443221111110011               11 0011  127899999999999999654      4588889


Q ss_pred             HHHHhhcCCEEEEE-EechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          175 REAADHDGKTVIVA-GLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       175 ~~l~~~~g~tviiv-tHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      ++++++.+.|+|++ +|+.+++.+          +||++++|++ +++..
T Consensus       162 ~~~~~~~~~t~ii~~~h~~~~~~~----------~~d~i~~l~~G~i~~~  201 (202)
T cd03233         162 RTMADVLKTTTFVSLYQASDEIYD----------LFDKVLVLYEGRQIYY  201 (202)
T ss_pred             HHHHHhCCCEEEEEEcCCHHHHHH----------hCCeEEEEECCEEEec
Confidence            98876546776665 556677765          8999999999 77654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.94  E-value=2.7e-26  Score=202.38  Aligned_cols=163  Identities=16%  Similarity=0.132  Sum_probs=111.1

Q ss_pred             EEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee-------------------EEE
Q 023563           53 VSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN-------------------VAV  111 (280)
Q Consensus        53 l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~-------------------i~~  111 (280)
                      |+++|++++|++ +.+++|+||+|++|++++|+||||||||||+ ++|+|+.. ....                   ++|
T Consensus         3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   81 (229)
T cd03254           3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLI-NLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV   81 (229)
T ss_pred             EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence            789999999975 5799999999999999999999999999999 99999842 1122                   333


Q ss_pred             ecCCccccc-ccceeee--ecc----cccccccccCchHHHH-----------------------H--HhhhhccCCCEE
Q 023563          112 IKSNKDTRY-GLDSIVT--HDG----VKLPCCALTTLSSFRQ-----------------------K--FGSDAYDQVDVI  159 (280)
Q Consensus       112 ~~~~~~~~~-~~~~v~~--~~~----~~~~~~~~~~l~~~~~-----------------------~--~a~aL~~~p~lL  159 (280)
                      ++|...... .+...+.  ...    .....+...++..+.+                       +  .+++|+.+|++|
T Consensus        82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ll  161 (229)
T cd03254          82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL  161 (229)
T ss_pred             ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            333321100 0000000  000    0000000111111111                       1  167899999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||++.+      .+++.|+++. + |+|||++||+++++.           .||++++|++ +++..|+.+++.
T Consensus       162 llDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-----------~~d~i~~l~~g~~~~~~~~~~~~  225 (229)
T cd03254         162 ILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIK-----------NADKILVLDDGKIIEEGTHDELL  225 (229)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-----------hCCEEEEEeCCeEEEeCCHHHHH
Confidence            999997654      4788888875 4 899999999999874           6999999999 888877776654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.8e-26  Score=202.81  Aligned_cols=164  Identities=16%  Similarity=0.144  Sum_probs=114.3

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC-eeEEEecCC-------cccccc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG-RNVAVIKSN-------KDTRYG  121 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g-~~i~~~~~~-------~~~~~~  121 (280)
                      .++|+++||+++|+++++|+|||++|++||.++|+||||||||||+ ++++|..... ..+..+...       .+.|..
T Consensus        29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL-~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~  107 (257)
T COG1119          29 EPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLL-SLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR  107 (257)
T ss_pred             cceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHH-HHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence            4689999999999999999999999999999999999999999999 9999974421 111111110       111222


Q ss_pred             cceeee----------------------eccccc------------ccccccCchHHHHHH--------------hhhhc
Q 023563          122 LDSIVT----------------------HDGVKL------------PCCALTTLSSFRQKF--------------GSDAY  153 (280)
Q Consensus       122 ~~~v~~----------------------~~~~~~------------~~~~~~~l~~~~~~~--------------a~aL~  153 (280)
                      ++.+..                      ..+...            ..+...++.++.++.              ||||+
T Consensus       108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv  187 (257)
T COG1119         108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALV  187 (257)
T ss_pred             hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHh
Confidence            221110                      001110            001122333333332              78999


Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhh-cCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADH-DGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~-~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      .+|++||||||+...      .+.+.|.+++.. .+.++|+|||..+++..          ..++++.+++ +++..|.
T Consensus       188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~----------~~th~lll~~g~v~~~g~  256 (257)
T COG1119         188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPP----------CFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhccc----------ccceEEEeeCCceeeccc
Confidence            999999999996654      467777777653 37889999999998865          8899999999 8887663

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.93  E-value=5e-26  Score=199.97  Aligned_cols=156  Identities=17%  Similarity=0.243  Sum_probs=105.9

Q ss_pred             cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------c
Q 023563           52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------D  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~  117 (280)
                      .|+++|+++.|++    +.+|+|+||++++|++++|+||||||||||+ ++|+|+.. ....+.+-....         .
T Consensus         1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (220)
T TIGR02982         1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQELYGASEKELVQ   79 (220)
T ss_pred             CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEhHhcCHhHHHH
Confidence            3789999999975    6799999999999999999999999999999 99999732 222221111000         0


Q ss_pred             cccccceeeeecccc----------------------------cccccccCchHHHHHH--------------hhhhccC
Q 023563          118 TRYGLDSIVTHDGVK----------------------------LPCCALTTLSSFRQKF--------------GSDAYDQ  155 (280)
Q Consensus       118 ~~~~~~~v~~~~~~~----------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~  155 (280)
                      .+..++++++.....                            ...+...++....++.              +++++.+
T Consensus        80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~  159 (220)
T TIGR02982        80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHR  159 (220)
T ss_pred             HHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence            011222332211100                            0001111222211111              5689999


Q ss_pred             CCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563          156 VDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC  219 (280)
Q Consensus       156 p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i  219 (280)
                      |++||||||+..      ..++++|++++++.|+|||++||+++.. +          +||++++|++ ++
T Consensus       160 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~----------~~d~v~~l~~g~~  219 (220)
T TIGR02982       160 PKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-D----------VADRIVHMEDGKL  219 (220)
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-h----------hCCEEEEEECCEE
Confidence            999999999654      4588889888765599999999999865 3          8999999987 53

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=8.6e-26  Score=203.88  Aligned_cols=167  Identities=14%  Similarity=0.074  Sum_probs=118.5

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------  116 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------  116 (280)
                      .+.+.+++++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..      ....+.+...+.       
T Consensus         6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   84 (261)
T PRK14263          6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVL-RSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP   84 (261)
T ss_pred             CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHcccccccCCCCceEEEECCEeccccccch
Confidence            3479999999999999999999999999999999999999999999 99999752      233333322111       


Q ss_pred             -ccccccceeeeeccccc-------------------------ccccccCchH----HHHH--------------Hhhhh
Q 023563          117 -DTRYGLDSIVTHDGVKL-------------------------PCCALTTLSS----FRQK--------------FGSDA  152 (280)
Q Consensus       117 -~~~~~~~~v~~~~~~~~-------------------------~~~~~~~l~~----~~~~--------------~a~aL  152 (280)
                       ..+..++++++......                         ..+...++..    ..++              .|+||
T Consensus        85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral  164 (261)
T PRK14263         85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAI  164 (261)
T ss_pred             HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence             11222333333211100                         0011111110    0000              05789


Q ss_pred             ccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee--------c-
Q 023563          153 YDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT--------A-  217 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~--------~-  217 (280)
                      +.+|++||||||++.      ..++++|+++. + +.|+|++||+++++.+          +||++++|+        + 
T Consensus       165 ~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~----------~~d~v~~l~~~~~~~~~~G  232 (261)
T PRK14263        165 ATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIR----------VADTTAFFSVDISQGTRTG  232 (261)
T ss_pred             HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHH----------hCCEEEEEecccccccCCc
Confidence            999999999999664      45888888885 3 7899999999999876          999999995        5 


Q ss_pred             eeccccCcceee
Q 023563          218 RCEFCGKRAFFT  229 (280)
Q Consensus       218 ~i~~~g~~~~~~  229 (280)
                      +++..|+++++.
T Consensus       233 ~i~~~g~~~~~~  244 (261)
T PRK14263        233 YLVEMGPTAQIF  244 (261)
T ss_pred             eEEEeCCHHHHH
Confidence            888889888876

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=4e-26  Score=194.59  Aligned_cols=158  Identities=22%  Similarity=0.241  Sum_probs=114.1

Q ss_pred             ccEEEcCceEEeCCee--eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCccccc
Q 023563           51 SMVSPRPPLFSLQNRN--LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRY  120 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~--vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~  120 (280)
                      +++.+++++.+|+++.  +|+|+|++|.+||.++++||||||||||+ ++++|+..        +++.+.  .|.  ...
T Consensus         2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLL-nl~AGf~~P~~G~i~l~~r~i~--gPg--aer   76 (259)
T COG4525           2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLL-NLIAGFVTPSRGSIQLNGRRIE--GPG--AER   76 (259)
T ss_pred             ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHH-HHHhcCcCcccceEEECCEecc--CCC--ccc
Confidence            3688999999998876  99999999999999999999999999999 99999832        222221  000  011


Q ss_pred             ccceeeeeccccccc----------------------------ccccCchHHHHHH--------------hhhhccCCCE
Q 023563          121 GLDSIVTHDGVKLPC----------------------------CALTTLSSFRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       121 ~~~~v~~~~~~~~~~----------------------------~~~~~l~~~~~~~--------------a~aL~~~p~l  158 (280)
                        +-+||.+. +.++                            +..+++.++.+++              ||||+.+|++
T Consensus        77 --gvVFQ~~~-LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~  153 (259)
T COG4525          77 --GVVFQNEA-LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL  153 (259)
T ss_pred             --eeEeccCc-cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence              12333222 2222                            1122222222222              6899999999


Q ss_pred             EEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec---eeccccCcc
Q 023563          159 IGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA---RCEFCGKRA  226 (280)
Q Consensus       159 LlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~---~i~~~g~~~  226 (280)
                      |+||||...      +.+.++|.+++++.|+.+++||||++++.=          +++++++|+.   +++..-+++
T Consensus       154 LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlf----------latrLvvlsp~pgRvv~~~~~d  220 (259)
T COG4525         154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALF----------LATRLVVLSPGPGRVVERLPLD  220 (259)
T ss_pred             EeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHh----------hhheeEEecCCCceeeEecCCC
Confidence            999999544      457888889998889999999999999964          8999999985   666554443

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.93  E-value=8.6e-26  Score=198.73  Aligned_cols=153  Identities=17%  Similarity=0.135  Sum_probs=105.1

Q ss_pred             cEEEcCceEEeCC-------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Cc---
Q 023563           52 MVSPRPPLFSLQN-------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NK---  116 (280)
Q Consensus        52 ~l~~~~ls~~y~~-------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~---  116 (280)
                      ||+++|++++|++       +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..    +.   
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~~~g~~~~~~~~   79 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLL-KSLYANYLPDSGRILVRHEGAWVDLAQA   79 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEEEecCCCccchhhc
Confidence            5899999999962       4799999999999999999999999999999 99999842 2333333210    00   


Q ss_pred             --c-----cccccceeeeeccccc---------------------------ccccccCchH-HHHHH-------------
Q 023563          117 --D-----TRYGLDSIVTHDGVKL---------------------------PCCALTTLSS-FRQKF-------------  148 (280)
Q Consensus       117 --~-----~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~~-~~~~~-------------  148 (280)
                        .     .+..++++++......                           ..+...++.. +.++.             
T Consensus        80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~  159 (224)
T TIGR02324        80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN  159 (224)
T ss_pred             CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence              0     0112333333211100                           0011112211 11111             


Q ss_pred             -hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          149 -GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       149 -a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                       +++|+.+|++||||||++..      .+.+.|++++++ |.|||++||+++++.+          +||+++.+.
T Consensus       160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vsH~~~~~~~----------~~d~i~~~~  223 (224)
T TIGR02324       160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGIFHDEEVREL----------VADRVMDVT  223 (224)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH----------hcceeEecC
Confidence             56899999999999997654      478888888765 9999999999999876          899998764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.93  E-value=4.6e-26  Score=192.97  Aligned_cols=150  Identities=23%  Similarity=0.229  Sum_probs=105.8

Q ss_pred             EEEcCceEEeCCe--eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------ccccccc
Q 023563           53 VSPRPPLFSLQNR--NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGLD  123 (280)
Q Consensus        53 l~~~~ls~~y~~~--~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~~  123 (280)
                      |+++|++++|+++  .+++++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-....      ..+..++
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLL-KLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA   79 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence            4789999999875  799999999999999999999999999999 99999843 223332221110      1122334


Q ss_pred             eeeeecccccccccccC-ch-HHHHH--HhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechh
Q 023563          124 SIVTHDGVKLPCCALTT-LS-SFRQK--FGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGD  193 (280)
Q Consensus       124 ~v~~~~~~~~~~~~~~~-l~-~~~~~--~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~  193 (280)
                      ++++... .++....++ ++ ...++  .+++++.+|++||||||++.      ..+.++|+++. + ++|+|++|||++
T Consensus        80 ~~~~~~~-~~~~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~  156 (171)
T cd03228          80 YVPQDPF-LFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLS  156 (171)
T ss_pred             EEcCCch-hccchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH
Confidence            4444332 222211112 11 11122  27899999999999999654      45778888875 3 799999999999


Q ss_pred             HhhhccCCccccccccceEEEeec
Q 023563          194 YLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       194 ~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ++.           .||++++|++
T Consensus       157 ~~~-----------~~d~~~~l~~  169 (171)
T cd03228         157 TIR-----------DADRIIVLDD  169 (171)
T ss_pred             HHH-----------hCCEEEEEcC
Confidence            885           4999999975

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.93  E-value=2.8e-26  Score=249.89  Aligned_cols=172  Identities=13%  Similarity=0.126  Sum_probs=124.8

Q ss_pred             CccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccc
Q 023563           50 HSMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYG  121 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~  121 (280)
                      +.+|+++||+|+|++  +.+|+|+||+|++||++||+||||||||||+ ++|.|+.. ....+.+....     ...+..
T Consensus      1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLl-kmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTF-KMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred             CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHH-HHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence            347999999999985  6799999999999999999999999999999 99999732 11222111100     001122


Q ss_pred             cceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          122 LDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       122 ~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      +++++|......                           ..+...++.++.++.              |+||+.+|++||
T Consensus      2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257      2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred             EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            333333211100                           011223343333322              678999999999


Q ss_pred             EeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563          161 IDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT  233 (280)
Q Consensus       161 LDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~  233 (280)
                      ||||+++      ..+++.|++++++ |+|||++||+++++.+          +||||++|++ ++++.|+++++..+..
T Consensus      2094 LDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~----------lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257      2094 LDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEA----------LCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCHHHHHHHhC
Confidence            9999664      4589999998876 9999999999999987          9999999999 9999999998865443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.93  E-value=7.6e-26  Score=200.81  Aligned_cols=163  Identities=15%  Similarity=0.150  Sum_probs=110.8

Q ss_pred             EEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee-------------------E
Q 023563           53 VSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN-------------------V  109 (280)
Q Consensus        53 l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~-------------------i  109 (280)
                      |+++|+++.|++   +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....                   +
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   79 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI   79 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHH-HHHhccCCCCCCEEEECCEehhhcCHHHHHhhE
Confidence            478999999964   4699999999999999999999999999999 99999832 1112                   3


Q ss_pred             EEecCCcccc-cccceeee--eccc----ccccccccCchHHH-----------------------HH--HhhhhccCCC
Q 023563          110 AVIKSNKDTR-YGLDSIVT--HDGV----KLPCCALTTLSSFR-----------------------QK--FGSDAYDQVD  157 (280)
Q Consensus       110 ~~~~~~~~~~-~~~~~v~~--~~~~----~~~~~~~~~l~~~~-----------------------~~--~a~aL~~~p~  157 (280)
                      ++++|..... ..+...+.  ....    ........++..+.                       .+  .+++++.+|+
T Consensus        80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~  159 (238)
T cd03249          80 GLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK  159 (238)
T ss_pred             EEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence            3333332110 00000000  0000    00000001111111                       11  1678999999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +||||||++..      .+++.|+++. + |+|||++||+++++.           +||++++|++ +++..|+.+++.
T Consensus       160 llllDEP~~gLD~~~~~~l~~~l~~~~-~-g~~vi~~sh~~~~~~-----------~~d~v~~l~~G~i~~~~~~~~~~  225 (238)
T cd03249         160 ILLLDEATSALDAESEKLVQEALDRAM-K-GRTTIVIAHRLSTIR-----------NADLIAVLQNGQVVEQGTHDELM  225 (238)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHh-----------hCCEEEEEECCEEEEeCCHHHHh
Confidence            99999996654      5788888886 4 999999999999884           7999999999 888888776664

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.93  E-value=8.8e-26  Score=196.87  Aligned_cols=152  Identities=18%  Similarity=0.100  Sum_probs=103.4

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---ccccccceeee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---DTRYGLDSIVT  127 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---~~~~~~~~v~~  127 (280)
                      ||+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|.|+.. ....+.+-....   ..+..++++.+
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (207)
T PRK13539          2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLL-RLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH   80 (207)
T ss_pred             EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence            69999999999988899999999999999999999999999999 99999832 222222211100   01111222221


Q ss_pred             eccc-----------------------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH--
Q 023563          128 HDGV-----------------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE--  168 (280)
Q Consensus       128 ~~~~-----------------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~--  168 (280)
                      +...                       ....+...++..+.++.              +++++.+|++||||||++..  
T Consensus        81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~  160 (207)
T PRK13539         81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA  160 (207)
T ss_pred             CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            1100                       00011112222221111              57899999999999996644  


Q ss_pred             ----HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          169 ----DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       169 ----~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                          .+++.|++++++ |+|||++||+++++.            .|+++.++.
T Consensus       161 ~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~------------~~~~~~~~~  200 (207)
T PRK13539        161 AAVALFAELIRAHLAQ-GGIVIAATHIPLGLP------------GARELDLGP  200 (207)
T ss_pred             HHHHHHHHHHHHHHHC-CCEEEEEeCCchhhc------------cCcEEeecC
Confidence                578888888765 999999999999885            288877754

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.93  E-value=1.9e-25  Score=188.56  Aligned_cols=147  Identities=19%  Similarity=0.169  Sum_probs=100.0

Q ss_pred             EEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CC--------eeEEEecCCccccccc
Q 023563           53 VSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KG--------RNVAVIKSNKDTRYGL  122 (280)
Q Consensus        53 l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g--------~~i~~~~~~~~~~~~~  122 (280)
                      |+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ..        +.+++++|+.... . 
T Consensus         1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~-~-   77 (166)
T cd03223           1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLF-RALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP-L-   77 (166)
T ss_pred             CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCCceEEEECCCCccc-c-
Confidence            46899999995 46799999999999999999999999999999 99999833 22        3455555543210 0 


Q ss_pred             ceeeeecccccccccccCchHH-HH--HHhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563          123 DSIVTHDGVKLPCCALTTLSSF-RQ--KFGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRR  197 (280)
Q Consensus       123 ~~v~~~~~~~~~~~~~~~l~~~-~~--~~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~  197 (280)
                      ..+.  ++....  ....++.- .+  ..+++++.+|++||||||++..|.  .+.+.++..+.+.|+|++|||++++. 
T Consensus        78 ~tv~--~nl~~~--~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~-  152 (166)
T cd03223          78 GTLR--EQLIYP--WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWK-  152 (166)
T ss_pred             ccHH--HHhhcc--CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHh-
Confidence            0000  000000  11222221 22  237899999999999999876541  22222222233789999999998653 


Q ss_pred             ccCCccccccccceEEEeec
Q 023563          198 SFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       198 ~~~~~~~ll~~aD~i~~L~~  217 (280)
                                +||++++|++
T Consensus       153 ----------~~d~i~~l~~  162 (166)
T cd03223         153 ----------FHDRVLDLDG  162 (166)
T ss_pred             ----------hCCEEEEEcC
Confidence                      8999999987

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.93  E-value=1.5e-25  Score=197.66  Aligned_cols=160  Identities=17%  Similarity=0.145  Sum_probs=109.7

Q ss_pred             cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----CCeeEEEecCCc---cccc
Q 023563           52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----KGRNVAVIKSNK---DTRY  120 (280)
Q Consensus        52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~g~~i~~~~~~~---~~~~  120 (280)
                      ++.++|++++|.+    +.+++|+||+|++||+++|+||||||||||+ ++|+|+..    ....+.+.....   ..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-k~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~   81 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLL-DAISGRVEGGGTTSGQILFNGQPRKPDQFQK   81 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHH-HHHhCccCCCCCCceEEEECCEECChHHhcc
Confidence            5789999999954    5799999999999999999999999999999 99999854    333332221110   1112


Q ss_pred             ccceeeeecccccc-------------------------------cccccCchHHHHH--------------HhhhhccC
Q 023563          121 GLDSIVTHDGVKLP-------------------------------CCALTTLSSFRQK--------------FGSDAYDQ  155 (280)
Q Consensus       121 ~~~~v~~~~~~~~~-------------------------------~~~~~~l~~~~~~--------------~a~aL~~~  155 (280)
                      .++++++.......                               .+...++..+.++              .+++++.+
T Consensus        82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  161 (226)
T cd03234          82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD  161 (226)
T ss_pred             cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence            22222221110000                               0000111111111              15689999


Q ss_pred             CCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEech-hHhhhccCCccccccccceEEEeec-eecccc
Q 023563          156 VDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDG-DYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       156 p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl-~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      |++||||||++.      ..++++|+++.++ |.|+|++||++ +++.+          +||++++|++ ++++.|
T Consensus       162 p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~----------~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         162 PKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFR----------LFDRILLLSSGEIVYSG  226 (226)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHH----------hCCEEEEEeCCEEEecC
Confidence            999999999654      4588888888765 89999999998 57765          9999999999 877654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=6.1e-26  Score=228.06  Aligned_cols=165  Identities=15%  Similarity=0.149  Sum_probs=116.6

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEEEecCCccccc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVAVIKSNKDTRY  120 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~~~~~~~~~~~  120 (280)
                      .++|+++||++.|+++.+|+|+||+|.+|+++||+||||||||||+ ++|+|+..         .+..++|++|......
T Consensus       310 ~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLl-k~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l  388 (638)
T PRK10636        310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLI-KLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFL  388 (638)
T ss_pred             CceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEEECCCEEEEEecCcchhhC
Confidence            4589999999999998999999999999999999999999999999 99999732         1335777777531100


Q ss_pred             ccc-eeeee-----cc----cccccccccCch-HHHHH--------------HhhhhccCCCEEEEeCcccHHH------
Q 023563          121 GLD-SIVTH-----DG----VKLPCCALTTLS-SFRQK--------------FGSDAYDQVDVIGIDEAQFFED------  169 (280)
Q Consensus       121 ~~~-~v~~~-----~~----~~~~~~~~~~l~-~~~~~--------------~a~aL~~~p~lLlLDEP~~~~~------  169 (280)
                      ... .+...     ..    .....+...++. ....+              .|++++.+|++|||||||+.+|      
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~  468 (638)
T PRK10636        389 RADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQA  468 (638)
T ss_pred             CccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence            000 00000     00    000111122221 11111              1568999999999999988765      


Q ss_pred             HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec-cccCcceee
Q 023563          170 LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE-FCGKRAFFT  229 (280)
Q Consensus       170 i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~-~~g~~~~~~  229 (280)
                      +.+.|.++    +.|||+||||++++.+          +||+|++|++ +++ +.|+.+++.
T Consensus       469 l~~~L~~~----~gtvi~vSHd~~~~~~----------~~d~i~~l~~G~i~~~~g~~~~~~  516 (638)
T PRK10636        469 LTEALIDF----EGALVVVSHDRHLLRS----------TTDDLYLVHDGKVEPFDGDLEDYQ  516 (638)
T ss_pred             HHHHHHHc----CCeEEEEeCCHHHHHH----------hCCEEEEEECCEEEEcCCCHHHHH
Confidence            44444443    4599999999999987          9999999998 776 788887763

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.93  E-value=6.2e-26  Score=200.98  Aligned_cols=163  Identities=18%  Similarity=0.221  Sum_probs=110.6

Q ss_pred             EEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCee------------EEE
Q 023563           53 VSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRN------------VAV  111 (280)
Q Consensus        53 l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~------------i~~  111 (280)
                      |+++|++++|+ ++.+++|+||+|++|++++|+||||||||||+ ++|+|+..        +|.+            +++
T Consensus         1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~   79 (236)
T cd03253           1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTIL-RLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV   79 (236)
T ss_pred             CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            47899999995 57799999999999999999999999999999 99999842        2221            333


Q ss_pred             ecCCcccc-cccceee--eeccc----ccccccccCchHHH-----------------------HH--HhhhhccCCCEE
Q 023563          112 IKSNKDTR-YGLDSIV--THDGV----KLPCCALTTLSSFR-----------------------QK--FGSDAYDQVDVI  159 (280)
Q Consensus       112 ~~~~~~~~-~~~~~v~--~~~~~----~~~~~~~~~l~~~~-----------------------~~--~a~aL~~~p~lL  159 (280)
                      ++|+.... ..+...+  .....    ........++....                       .+  .+++|+.+|++|
T Consensus        80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll  159 (236)
T cd03253          80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL  159 (236)
T ss_pred             ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            33332110 0000000  00000    00000000111110                       11  167899999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||++..      .+++.|.++++  |+|||++||+++++.           .||++++|++ +++..|+++++.
T Consensus       160 llDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~~-----------~~d~~~~l~~g~i~~~~~~~~~~  223 (236)
T cd03253         160 LLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIV-----------NADKIIVLKDGRIVERGTHEELL  223 (236)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHHH-----------hCCEEEEEECCEEEeeCCHHHHh
Confidence            999997654      47788877754  899999999999885           5999999999 888888877665

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.93  E-value=5.7e-26  Score=203.43  Aligned_cols=160  Identities=18%  Similarity=0.111  Sum_probs=109.6

Q ss_pred             EEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc------ccccccceeee
Q 023563           54 SPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK------DTRYGLDSIVT  127 (280)
Q Consensus        54 ~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~------~~~~~~~~v~~  127 (280)
                      +++||++.    .+|+|+||+|++|++++|+||||||||||+ ++|+|+......+.+.....      ..+..++++++
T Consensus         2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl-~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q   76 (248)
T PRK03695          2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLL-ARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQ   76 (248)
T ss_pred             cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecc
Confidence            57888875    389999999999999999999999999999 99999853333332211100      00111222222


Q ss_pred             ecccc--------------------------cccccccCchHHHHHH--------------hhhhcc-------CCCEEE
Q 023563          128 HDGVK--------------------------LPCCALTTLSSFRQKF--------------GSDAYD-------QVDVIG  160 (280)
Q Consensus       128 ~~~~~--------------------------~~~~~~~~l~~~~~~~--------------a~aL~~-------~p~lLl  160 (280)
                      .....                          ...+...++....++.              +++|+.       +|++||
T Consensus        77 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~lll  156 (248)
T PRK03695         77 QQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLL  156 (248)
T ss_pred             cCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEE
Confidence            11000                          0001111222211111              567886       679999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||++.+      .+.++|++++++ |.|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       157 lDEPt~~LD~~~~~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~  221 (248)
T PRK03695        157 LDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHDLNHTLR----------HADRVWLLKQGKLLASGRRDEVL  221 (248)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEECCHHHHh
Confidence            99996654      478888888765 9999999999998876          9999999999 999999888775

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.93  E-value=5.6e-26  Score=222.21  Aligned_cols=166  Identities=16%  Similarity=0.113  Sum_probs=115.0

Q ss_pred             CccEEEcCceEEe---CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCc-------c
Q 023563           50 HSMVSPRPPLFSL---QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNK-------D  117 (280)
Q Consensus        50 ~~~l~~~~ls~~y---~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~-------~  117 (280)
                      .++|+++|++++|   +++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..  ....+.+.....       .
T Consensus       255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~  333 (500)
T TIGR02633       255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELV-QALFGAYPGKFEGNVFINGKPVDIRNPAQA  333 (500)
T ss_pred             CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHH-HHHhCCCCCCCCeEEEECCEECCCCCHHHH
Confidence            3589999999999   346799999999999999999999999999999 99999853  233333221110       0


Q ss_pred             cccccceeeeecc---ccc--------------------------------ccccccCchH-HHH------------H--
Q 023563          118 TRYGLDSIVTHDG---VKL--------------------------------PCCALTTLSS-FRQ------------K--  147 (280)
Q Consensus       118 ~~~~~~~v~~~~~---~~~--------------------------------~~~~~~~l~~-~~~------------~--  147 (280)
                      .+..+++++|...   ...                                ..+...++.. ..+            +  
T Consensus       334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~  413 (500)
T TIGR02633       334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV  413 (500)
T ss_pred             HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence            0112233332210   000                                0001111110 000            0  


Q ss_pred             HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563          148 FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       148 ~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                      .|++|+.+|++||||||++.+      .++++|++++++ |.|||++|||++++.+          +||++++|++ +++
T Consensus       414 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~----------~~d~v~~l~~G~i~  482 (500)
T TIGR02633       414 LAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLG----------LSDRVLVIGEGKLK  482 (500)
T ss_pred             HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEE
Confidence            156899999999999997755      478888888876 9999999999999986          9999999998 887


Q ss_pred             cccCcce
Q 023563          221 FCGKRAF  227 (280)
Q Consensus       221 ~~g~~~~  227 (280)
                      +.++.++
T Consensus       483 ~~~~~~~  489 (500)
T TIGR02633       483 GDFVNHA  489 (500)
T ss_pred             EEEcccc
Confidence            6665443

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1e-25  Score=207.85  Aligned_cols=169  Identities=16%  Similarity=0.105  Sum_probs=117.8

Q ss_pred             CCCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-----
Q 023563           48 FIHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-----  116 (280)
Q Consensus        48 ~~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-----  116 (280)
                      ...++|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+ ++|+|+..      ....+.+-....     
T Consensus        41 ~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl-~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~  119 (305)
T PRK14264         41 DGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFL-RCLNRMNDRIKAARIDGSVELDGQDIYQDGV  119 (305)
T ss_pred             CCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceEEEECCEEcccccc
Confidence            345689999999999988999999999999999999999999999999 99999852      222232211100     


Q ss_pred             ---ccccccceeeeeccc---------ccc------------------------------cccccCc----hHHHHH---
Q 023563          117 ---DTRYGLDSIVTHDGV---------KLP------------------------------CCALTTL----SSFRQK---  147 (280)
Q Consensus       117 ---~~~~~~~~v~~~~~~---------~~~------------------------------~~~~~~l----~~~~~~---  147 (280)
                         ..+..+.++++....         ...                              .+...++    .....+   
T Consensus       120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~  199 (305)
T PRK14264        120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL  199 (305)
T ss_pred             cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence               011123333332110         000                              0000111    011111   


Q ss_pred             -----------HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccc
Q 023563          148 -----------FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLAD  210 (280)
Q Consensus       148 -----------~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD  210 (280)
                                 .+++|+.+|++||||||++.+      .++++|+++++  +.|||++||+++++.+          +||
T Consensus       200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~----------~~d  267 (305)
T PRK14264        200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAAR----------ISD  267 (305)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHH----------hcC
Confidence                       167899999999999996654      57888888875  5899999999999876          999


Q ss_pred             eE-EEeec-eeccccCcceee
Q 023563          211 SV-TKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       211 ~i-~~L~~-~i~~~g~~~~~~  229 (280)
                      ++ ++|++ +++..|+++++.
T Consensus       268 ~i~~~l~~G~i~~~g~~~~~~  288 (305)
T PRK14264        268 QTAVFLTGGELVEYDDTDKIF  288 (305)
T ss_pred             EEEEEecCCEEEEeCCHHHHH
Confidence            97 56788 999999988775

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.93  E-value=9.2e-26  Score=195.89  Aligned_cols=151  Identities=19%  Similarity=0.144  Sum_probs=103.3

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccccceee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDSIV  126 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~v~  126 (280)
                      |+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....     ...+..+++++
T Consensus         1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (201)
T cd03231           1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLL-RILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG   79 (201)
T ss_pred             CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence            4789999999988999999999999999999999999999999 99999832 22222111100     01111222222


Q ss_pred             eecccc---------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH----
Q 023563          127 THDGVK---------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF----  167 (280)
Q Consensus       127 ~~~~~~---------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~----  167 (280)
                      ++....                     ...+...++..+.++.              |++++.+|++||||||++.    
T Consensus        80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~  159 (201)
T cd03231          80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA  159 (201)
T ss_pred             cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence            211100                     0011112222221111              6789999999999999654    


Q ss_pred             --HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563          168 --EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL  215 (280)
Q Consensus       168 --~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L  215 (280)
                        ..+.+.|+++.++ |.|+|++|||......          +|++++++
T Consensus       160 ~~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~----------~~~~~~~~  198 (201)
T cd03231         160 GVARFAEAMAGHCAR-GGMVVLTTHQDLGLSE----------AGARELDL  198 (201)
T ss_pred             HHHHHHHHHHHHHhC-CCEEEEEecCchhhhh----------ccceeEec
Confidence              4578888888765 9999999999887765          89999886

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.2e-25  Score=221.51  Aligned_cols=167  Identities=13%  Similarity=0.168  Sum_probs=115.1

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC-eeEEEecCCcccccc-
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG-RNVAVIKSNKDTRYG-  121 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g-~~i~~~~~~~~~~~~-  121 (280)
                      ||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..        .+ ..+++++|....... 
T Consensus         1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl-~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~   79 (530)
T PRK15064          1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFM-KILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEF   79 (530)
T ss_pred             CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCC
Confidence            58999999999988999999999999999999999999999999 99999732        22 346677665321100 


Q ss_pred             -cceee------------------ee--------------------------cccccccccccCchHHH-HH--------
Q 023563          122 -LDSIV------------------TH--------------------------DGVKLPCCALTTLSSFR-QK--------  147 (280)
Q Consensus       122 -~~~v~------------------~~--------------------------~~~~~~~~~~~~l~~~~-~~--------  147 (280)
                       +...+                  ..                          .......+...++.... ++        
T Consensus        80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG  159 (530)
T PRK15064         80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPG  159 (530)
T ss_pred             cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHH
Confidence             00000                  00                          00000111122232211 11        


Q ss_pred             ------HhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563          148 ------FGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R  218 (280)
Q Consensus       148 ------~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~  218 (280)
                            +|++|+.+|++||||||++.+|.  .+.+.++..+.|.|||++|||++++.+          +||+|++|++ +
T Consensus       160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~----------~~d~i~~l~~g~  229 (530)
T PRK15064        160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNS----------VCTHMADLDYGE  229 (530)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh----------hcceEEEEeCCE
Confidence                  16789999999999999887641  222333323348999999999999986          9999999999 8


Q ss_pred             e-ccccCcceee
Q 023563          219 C-EFCGKRAFFT  229 (280)
Q Consensus       219 i-~~~g~~~~~~  229 (280)
                      + ++.|+++++.
T Consensus       230 i~~~~g~~~~~~  241 (530)
T PRK15064        230 LRVYPGNYDEYM  241 (530)
T ss_pred             EEEecCCHHHHH
Confidence            7 4788877664

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.93  E-value=8.4e-26  Score=195.47  Aligned_cols=147  Identities=20%  Similarity=0.156  Sum_probs=99.4

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccccce
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGLDS  124 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~~~  124 (280)
                      |+++|+++.|+++.+|+|+||+|.+|++++|+||||||||||+ ++|+|+..        +|.++....  ...+..+++
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~   77 (198)
T TIGR01189         1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLL-RILAGLLRPDSGEVRWNGTALAEQR--DEPHRNILY   77 (198)
T ss_pred             CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCEEcccch--HHhhhheEE
Confidence            4789999999999999999999999999999999999999999 99999732        222211000  000111222


Q ss_pred             eeeeccc-----------------------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH
Q 023563          125 IVTHDGV-----------------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF  167 (280)
Q Consensus       125 v~~~~~~-----------------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~  167 (280)
                      +++....                       ....+...++..+.++.              +++++.+|++||||||++.
T Consensus        78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~  157 (198)
T TIGR01189        78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTA  157 (198)
T ss_pred             eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence            2221100                       00111112232222211              5789999999999999764


Q ss_pred             H------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563          168 E------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL  215 (280)
Q Consensus       168 ~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L  215 (280)
                      .      .+++.|.+++++ |.|+|++||+...+            .|++++.+
T Consensus       158 LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~~------------~~~~~~~~  198 (198)
T TIGR01189       158 LDKAGVALLAGLLRAHLAR-GGIVLLTTHQDLGL------------VEARELRL  198 (198)
T ss_pred             CCHHHHHHHHHHHHHHHhC-CCEEEEEEcccccc------------cceEEeeC
Confidence            4      578888888765 99999999999766            57887653

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.93  E-value=1.9e-26  Score=232.34  Aligned_cols=163  Identities=20%  Similarity=0.206  Sum_probs=119.4

Q ss_pred             cEEEcCceEEeCCe--eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccc
Q 023563           52 MVSPRPPLFSLQNR--NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYG  121 (280)
Q Consensus        52 ~l~~~~ls~~y~~~--~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~  121 (280)
                      -++++||+++|+..  .+|+|+||+|++||.+||+|+||||||||+ |++.|+..        +|.++..+.. ...|..
T Consensus       471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~-KLL~gly~p~~G~I~~dg~dl~~i~~-~~lR~~  548 (709)
T COG2274         471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLL-KLLLGLYKPQQGRILLDGVDLNDIDL-ASLRRQ  548 (709)
T ss_pred             eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEeHHhcCH-HHHHhh
Confidence            59999999999765  699999999999999999999999999999 99999732        3333221111 112333


Q ss_pred             cceeeeeccccc--------------------ccccccC----------------------ch-HHHHHH--hhhhccCC
Q 023563          122 LDSIVTHDGVKL--------------------PCCALTT----------------------LS-SFRQKF--GSDAYDQV  156 (280)
Q Consensus       122 ~~~v~~~~~~~~--------------------~~~~~~~----------------------l~-~~~~~~--a~aL~~~p  156 (280)
                      ++++.|+.....                    .+....+                      ++ ..+.+.  ||||+.+|
T Consensus       549 ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P  628 (709)
T COG2274         549 VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP  628 (709)
T ss_pred             eeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC
Confidence            444433211100                    0000111                      11 111121  78999999


Q ss_pred             CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++|||||||+..|      +.+.|.++..  |+|+|++||.+..+.           .||+|++|+. +++.+|+.+++.
T Consensus       629 ~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~ti~-----------~adrIiVl~~Gkiv~~gs~~ell  695 (709)
T COG2274         629 KILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRLSTIR-----------SADRIIVLDQGKIVEQGSHEELL  695 (709)
T ss_pred             CEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccchHhh-----------hccEEEEccCCceeccCCHHHHH
Confidence            9999999988764      7777877765  899999999999987           7999999999 999999999987

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=8.7e-26  Score=222.44  Aligned_cols=165  Identities=19%  Similarity=0.200  Sum_probs=116.8

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC-eeEEEecCCccc--
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG-RNVAVIKSNKDT--  118 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g-~~i~~~~~~~~~--  118 (280)
                      .++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..        .+ ..++|++|....  
T Consensus       317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~  395 (530)
T PRK15064        317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLL-RTLVGELEPDSGTVKWSENANIGYYAQDHAYDF  395 (530)
T ss_pred             CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCceEEEEEcccccccC
Confidence            3589999999999988899999999999999999999999999999 99999732        22 357777775421  


Q ss_pred             c--cccceeee---ecc----cccccccccCc-hHHHHHH--------------hhhhccCCCEEEEeCcccHHH-----
Q 023563          119 R--YGLDSIVT---HDG----VKLPCCALTTL-SSFRQKF--------------GSDAYDQVDVIGIDEAQFFED-----  169 (280)
Q Consensus       119 ~--~~~~~v~~---~~~----~~~~~~~~~~l-~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~~-----  169 (280)
                      .  ..+...+.   ...    .....+...++ ....++.              |++++.+|++||||||++.+|     
T Consensus       396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~  475 (530)
T PRK15064        396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE  475 (530)
T ss_pred             CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence            1  11111000   000    00111112222 1122211              678999999999999987764     


Q ss_pred             -HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec-cccCcceee
Q 023563          170 -LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE-FCGKRAFFT  229 (280)
Q Consensus       170 -i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~-~~g~~~~~~  229 (280)
                       +++.|++    .+.|||++|||++++.+          +||++++|++ +++ +.|++.++.
T Consensus       476 ~l~~~l~~----~~~tvi~vsHd~~~~~~----------~~d~i~~l~~g~i~~~~g~~~~~~  524 (530)
T PRK15064        476 SLNMALEK----YEGTLIFVSHDREFVSS----------LATRIIEITPDGVVDFSGTYEEYL  524 (530)
T ss_pred             HHHHHHHH----CCCEEEEEeCCHHHHHH----------hCCEEEEEECCeEEEcCCCHHHHH
Confidence             4444433    35699999999999986          9999999998 776 778877665

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=8.4e-26  Score=187.71  Aligned_cols=166  Identities=16%  Similarity=0.205  Sum_probs=127.3

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC-eeEEEecCC------------ccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG-RNVAVIKSN------------KDT  118 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g-~~i~~~~~~------------~~~  118 (280)
                      .|+++|+++.||...+|.||+|+.++|+.+.|+||+|+|||||+ +.+.-+.... ..+..-.++            ...
T Consensus         2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssll-r~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l   80 (242)
T COG4161           2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLL-RVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL   80 (242)
T ss_pred             ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHH-HHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence            48999999999999999999999999999999999999999999 8887764321 111111111            122


Q ss_pred             ccccceeeeeccccccc----------------------------ccccCchHHHHHH--------------hhhhccCC
Q 023563          119 RYGLDSIVTHDGVKLPC----------------------------CALTTLSSFRQKF--------------GSDAYDQV  156 (280)
Q Consensus       119 ~~~~~~v~~~~~~~~~~----------------------------~~~~~l~~~~~~~--------------a~aL~~~p  156 (280)
                      |..++.+||+..+....                            +....+..+++++              ||||+++|
T Consensus        81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkp  160 (242)
T COG4161          81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEP  160 (242)
T ss_pred             HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCC
Confidence            56677777764432111                            1111233333333              68999999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++||+|||+..+      ++.++|+++... |+|-+++||..+.+.+          +|.+|+.|.+ +++..|+.+-+.
T Consensus       161 qvllfdeptaaldpeitaqvv~iikel~~t-gitqvivthev~va~k----------~as~vvyme~g~ive~g~a~~ft  229 (242)
T COG4161         161 QVLLFDEPTAALDPEITAQIVSIIKELAET-GITQVIVTHEVEVARK----------TASRVVYMENGHIVEQGDASCFT  229 (242)
T ss_pred             cEEeecCcccccCHHHHHHHHHHHHHHHhc-CceEEEEEeehhHHHh----------hhhheEeeecCeeEeecchhhcc
Confidence            999999998875      488999999875 9999999999999998          9999999999 999999987665

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=4.6e-26  Score=223.37  Aligned_cols=162  Identities=17%  Similarity=0.161  Sum_probs=111.7

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-------------e
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-------------N  108 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-------------~  108 (280)
                      .++|+++|+++.|+  .+|+|+||+|++|++++|+||||||||||+ ++|+|+..        .|.             .
T Consensus       263 ~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~  339 (510)
T PRK09700        263 ETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELM-NCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG  339 (510)
T ss_pred             CcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence            45899999999874  389999999999999999999999999999 99999732        221             2


Q ss_pred             EEEecCCcc---cc--cccceeee--ec----------cc---------ccccccccCch-HHHHHH-------------
Q 023563          109 VAVIKSNKD---TR--YGLDSIVT--HD----------GV---------KLPCCALTTLS-SFRQKF-------------  148 (280)
Q Consensus       109 i~~~~~~~~---~~--~~~~~v~~--~~----------~~---------~~~~~~~~~l~-~~~~~~-------------  148 (280)
                      ++|++|...   ..  ..+...+.  ..          +.         ....+...++. +..++.             
T Consensus       340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~  419 (510)
T PRK09700        340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL  419 (510)
T ss_pred             cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHH
Confidence            344444310   00  00000000  00          00         00001111221 111111             


Q ss_pred             -hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563          149 -GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       149 -a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                       |++|+.+|++||||||++.+      .++++|++++++ |.|||++|||++++.+          +||++++|++ +++
T Consensus       420 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~----------~~d~i~~l~~G~i~  488 (510)
T PRK09700        420 ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIIT----------VCDRIAVFCEGRLT  488 (510)
T ss_pred             HHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHh----------hCCEEEEEECCEEE
Confidence             67899999999999997654      478889988875 9999999999999986          9999999999 887


Q ss_pred             cccCc
Q 023563          221 FCGKR  225 (280)
Q Consensus       221 ~~g~~  225 (280)
                      ..++.
T Consensus       489 ~~~~~  493 (510)
T PRK09700        489 QILTN  493 (510)
T ss_pred             EEecC
Confidence            76655

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.93  E-value=1.3e-25  Score=197.41  Aligned_cols=154  Identities=18%  Similarity=0.158  Sum_probs=107.3

Q ss_pred             CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCcccccccceee-----eecccc-----
Q 023563           64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKDTRYGLDSIV-----THDGVK-----  132 (280)
Q Consensus        64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~~~~~~~~v~-----~~~~~~-----  132 (280)
                      ..++|+||||++++||.+||+|+||||||||+ ++|+|.... ...+. +.........++.-+     .+++..     
T Consensus        39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLl-kliaGi~~Pt~G~v~-v~G~v~~li~lg~Gf~pelTGreNi~l~~~~  116 (249)
T COG1134          39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLL-KLIAGIYKPTSGKVK-VTGKVAPLIELGAGFDPELTGRENIYLRGLI  116 (249)
T ss_pred             eEEEecCceEEEeCCCEEEEECCCCCcHHHHH-HHHhCccCCCCceEE-EcceEehhhhcccCCCcccchHHHHHHHHHH
Confidence            35799999999999999999999999999999 999997442 22221 111111000000000     011110     


Q ss_pred             ------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCc------ccHHHHHHHHHHHHhh
Q 023563          133 ------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA------QFFEDLYDFCREAADH  180 (280)
Q Consensus       133 ------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP------~~~~~i~~~l~~l~~~  180 (280)
                                  .+.....++.++.+.+              +-+...+|++||+||.      .|+....+.+.++.++
T Consensus       117 ~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~  196 (249)
T COG1134         117 LGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK  196 (249)
T ss_pred             hCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc
Confidence                        0111122333333322              2356789999999998      5677788889999776


Q ss_pred             cCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          181 DGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       181 ~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                       +.|+|+||||++.+.+          +||++++|++ .+...|+++++..
T Consensus       197 -~~tiv~VSHd~~~I~~----------~Cd~~i~l~~G~i~~~G~~~~vi~  236 (249)
T COG1134         197 -NKTIVLVSHDLGAIKQ----------YCDRAIWLEHGQIRMEGSPEEVIP  236 (249)
T ss_pred             -CCEEEEEECCHHHHHH----------hcCeeEEEeCCEEEEcCCHHHHHH
Confidence             8999999999999998          9999999999 9999999998873

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.93  E-value=5e-26  Score=222.06  Aligned_cols=164  Identities=12%  Similarity=0.085  Sum_probs=112.7

Q ss_pred             CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC--CeeEEEecCCc-------ccc
Q 023563           49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK--GRNVAVIKSNK-------DTR  119 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~--g~~i~~~~~~~-------~~~  119 (280)
                      ..++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+...  ...+.+.....       ..+
T Consensus       257 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~  335 (490)
T PRK10938        257 NEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLL-SLITGDHPQGYSNDLTLFGRRRGSGETIWDIK  335 (490)
T ss_pred             CCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence            34689999999999988899999999999999999999999999999 999997432  22332221100       001


Q ss_pred             cccceeeeeccc---------------------------------ccccccccCchH-HHHHH--------------hhh
Q 023563          120 YGLDSIVTHDGV---------------------------------KLPCCALTTLSS-FRQKF--------------GSD  151 (280)
Q Consensus       120 ~~~~~v~~~~~~---------------------------------~~~~~~~~~l~~-~~~~~--------------a~a  151 (280)
                      ..+++++|....                                 ....+...++.. ..++.              |++
T Consensus       336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a  415 (490)
T PRK10938        336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA  415 (490)
T ss_pred             hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence            122222221000                                 000111123322 22211              678


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      |+.+|++||||||++.+      .++++|++++++.+.|||++|||++++.+         .+||++++|++ +++..
T Consensus       416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~---------~~~d~v~~l~~G~i~~~  484 (490)
T PRK10938        416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA---------CITHRLEFVPDGDIYRY  484 (490)
T ss_pred             HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhh---------hhheeEEEecCCceEEe
Confidence            99999999999997654      58889999887634579999999999864         14999999998 76543

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.93  E-value=1.1e-25  Score=218.87  Aligned_cols=168  Identities=17%  Similarity=0.131  Sum_probs=117.5

Q ss_pred             CccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------ccc-
Q 023563           50 HSMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDT-  118 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~-  118 (280)
                      .++++++|++++|++   +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....      ... 
T Consensus        19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLL-kiLaGLl~P~sGeI~I~G~~~~i~~~~~l~   97 (549)
T PRK13545         19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLS-NLIAGVTMPNKGTVDIKGSAALIAISSGLN   97 (549)
T ss_pred             cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHH-HHHhCCCCCCceEEEECCEeeeEEeccccC
Confidence            458999999999976   4699999999999999999999999999999 99999843 22333221110      000 


Q ss_pred             -ccccceeee----eccc--------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH---
Q 023563          119 -RYGLDSIVT----HDGV--------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE---  168 (280)
Q Consensus       119 -~~~~~~v~~----~~~~--------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~---  168 (280)
                       ...+...+.    ....        ....+...++..+.++.              |+||+.+|++||||||++.+   
T Consensus        98 ~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~  177 (549)
T PRK13545         98 GQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT  177 (549)
T ss_pred             CCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence             000000000    0000        00111122333222221              67899999999999997654   


Q ss_pred             ---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          169 ---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       169 ---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                         .+++.|.+++++ |.|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       178 sr~~LlelL~el~~~-G~TIIIVSHdl~~i~~----------l~DrIivL~~GkIv~~G~~~el~  231 (549)
T PRK13545        178 FTKKCLDKMNEFKEQ-GKTIFFISHSLSQVKS----------FCTKALWLHYGQVKEYGDIKEVV  231 (549)
T ss_pred             HHHHHHHHHHHHHhC-CCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEECCHHHHH
Confidence               477888888664 9999999999999986          9999999999 998999887765

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.93  E-value=1.4e-25  Score=195.17  Aligned_cols=160  Identities=16%  Similarity=0.064  Sum_probs=107.6

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i  109 (280)
                      .|+++|++++|++  +.+++|+||+|++|++++|+||||||||||+ ++|+|+..        +|.            .+
T Consensus         6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   84 (207)
T cd03369           6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLI-LALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL   84 (207)
T ss_pred             eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            6899999999975  4799999999999999999999999999999 99999732        221            23


Q ss_pred             EEecCCccccc-ccceeeeec-cc----cccccc----ccCchH-HHHH--HhhhhccCCCEEEEeCcccHH------HH
Q 023563          110 AVIKSNKDTRY-GLDSIVTHD-GV----KLPCCA----LTTLSS-FRQK--FGSDAYDQVDVIGIDEAQFFE------DL  170 (280)
Q Consensus       110 ~~~~~~~~~~~-~~~~v~~~~-~~----~~~~~~----~~~l~~-~~~~--~a~aL~~~p~lLlLDEP~~~~------~i  170 (280)
                      ++++|+..... .+...+... ..    ....+.    ...++. ...+  .+++++.+|++||||||++..      .+
T Consensus        85 ~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l  164 (207)
T cd03369          85 TIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI  164 (207)
T ss_pred             EEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH
Confidence            34333321100 000000000 00    000000    001110 1111  167899999999999997654      47


Q ss_pred             HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563          171 YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR  225 (280)
Q Consensus       171 ~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~  225 (280)
                      +++|+++. + |.|+|++||+++++.           .||++++|++ +++..|++
T Consensus       165 ~~~l~~~~-~-~~tiii~th~~~~~~-----------~~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         165 QKTIREEF-T-NSTILTIAHRLRTII-----------DYDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             HHHHHHhc-C-CCEEEEEeCCHHHHh-----------hCCEEEEEECCEEEecCCC
Confidence            78888774 3 899999999999885           5999999999 87766653

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.93  E-value=3.1e-25  Score=219.81  Aligned_cols=168  Identities=15%  Similarity=0.123  Sum_probs=114.4

Q ss_pred             CccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEEEecCCcccc
Q 023563           50 HSMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVAVIKSNKDTR  119 (280)
Q Consensus        50 ~~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~~~~~~~~~~  119 (280)
                      .+||+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..         .+..+++++|.....
T Consensus         4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLl-k~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~   82 (556)
T PRK11819          4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLL-RIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD   82 (556)
T ss_pred             cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence            45899999999998 78899999999999999999999999999999 99999732         124567777764321


Q ss_pred             c--ccceeeeec------------------c------------------------------cccccccccCchH------
Q 023563          120 Y--GLDSIVTHD------------------G------------------------------VKLPCCALTTLSS------  143 (280)
Q Consensus       120 ~--~~~~v~~~~------------------~------------------------------~~~~~~~~~~l~~------  143 (280)
                      .  .+...+...                  .                              .....+...++..      
T Consensus        83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~  162 (556)
T PRK11819         83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT  162 (556)
T ss_pred             CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchh
Confidence            1  110000000                  0                              0000000111100      


Q ss_pred             -----HHHH--HhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEE
Q 023563          144 -----FRQK--FGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTK  214 (280)
Q Consensus       144 -----~~~~--~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~  214 (280)
                           ...+  .|++|+.+|++||||||++.+|.  .+.+.++.++.+.|||++|||++++.+          +||+|++
T Consensus       163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~----------~~d~i~~  232 (556)
T PRK11819        163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDN----------VAGWILE  232 (556)
T ss_pred             hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHh----------hcCeEEE
Confidence                 0111  16789999999999999887651  222333333335699999999999987          9999999


Q ss_pred             eec-eec-cccCccee
Q 023563          215 LTA-RCE-FCGKRAFF  228 (280)
Q Consensus       215 L~~-~i~-~~g~~~~~  228 (280)
                      |++ +++ +.|+.+++
T Consensus       233 l~~g~i~~~~g~~~~~  248 (556)
T PRK11819        233 LDRGRGIPWEGNYSSW  248 (556)
T ss_pred             EeCCEEEEecCCHHHH
Confidence            999 765 67776654

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.1e-25  Score=226.27  Aligned_cols=166  Identities=18%  Similarity=0.190  Sum_probs=113.2

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCe--------eEEEecCCccc--cc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGR--------NVAVIKSNKDT--RY  120 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~--------~i~~~~~~~~~--~~  120 (280)
                      ||+++||+++|+++.+|+|+||+|++|+++||+||||||||||+ ++|+|+. ....        .+++++|....  +.
T Consensus         1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLL-kiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~   79 (638)
T PRK10636          1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLL-ALLKNEISADGGSYTFPGNWQLAWVNQETPALPQP   79 (638)
T ss_pred             CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence            58999999999999999999999999999999999999999999 9999973 2222        34555553211  11


Q ss_pred             ccceeeeecc--------------------------------------cccccccccCch-HHHHHH-------------
Q 023563          121 GLDSIVTHDG--------------------------------------VKLPCCALTTLS-SFRQKF-------------  148 (280)
Q Consensus       121 ~~~~v~~~~~--------------------------------------~~~~~~~~~~l~-~~~~~~-------------  148 (280)
                      .+.++++...                                      .....+...++. ...++.             
T Consensus        80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~  159 (638)
T PRK10636         80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN  159 (638)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence            1111211000                                      000001111221 111111             


Q ss_pred             -hhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec-ccc
Q 023563          149 -GSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE-FCG  223 (280)
Q Consensus       149 -a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~-~~g  223 (280)
                       |++|+.+|++|||||||+.+|.  .+.|.++..+.+.|||+||||++++.+          +||+|++|++ ++. +.|
T Consensus       160 LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~----------~~d~i~~L~~G~i~~~~g  229 (638)
T PRK10636        160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDP----------IVDKIIHIEQQSLFEYTG  229 (638)
T ss_pred             HHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHH----------hcCEEEEEeCCEEEEecC
Confidence             6789999999999999988752  334444444457899999999999987          9999999998 764 456


Q ss_pred             Cccee
Q 023563          224 KRAFF  228 (280)
Q Consensus       224 ~~~~~  228 (280)
                      +...+
T Consensus       230 ~~~~~  234 (638)
T PRK10636        230 NYSSF  234 (638)
T ss_pred             CHHHH
Confidence            65544

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.7e-25  Score=193.62  Aligned_cols=167  Identities=17%  Similarity=0.171  Sum_probs=126.6

Q ss_pred             ccEEEcCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc----------hhCCeeEEEecCCcccc
Q 023563           51 SMVSPRPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE----------TQKGRNVAVIKSNKDTR  119 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl----------~~~g~~i~~~~~~~~~~  119 (280)
                      .+|+++||+.+.+++ .+|++|||+|++||+++|+||||||||||. ..|+|.          .++|.++..++++.+.+
T Consensus         2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa-~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr   80 (251)
T COG0396           2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLA-YTIMGHPKYEVTEGEILFDGEDILELSPDERAR   80 (251)
T ss_pred             ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHH-HHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence            379999999999985 999999999999999999999999999999 999995          45788888887777777


Q ss_pred             cccceeeeecccccc------------------------------cccccCch-HHHHHH---------------hhhhc
Q 023563          120 YGLDSIVTHDGVKLP------------------------------CCALTTLS-SFRQKF---------------GSDAY  153 (280)
Q Consensus       120 ~~~~~v~~~~~~~~~------------------------------~~~~~~l~-~~~~~~---------------a~aL~  153 (280)
                      .++.-.||.......                              .+...++. .+++|.               ...++
T Consensus        81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~  160 (251)
T COG0396          81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL  160 (251)
T ss_pred             cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence            776555553211000                              00111111 122222               22578


Q ss_pred             cCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|++.|||||-+..|      +.+.+.+++++ |.+++++||.-..+..         --.|++++|-+ +++..|.+ 
T Consensus       161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~~~liITHy~rll~~---------i~pD~vhvl~~GrIv~sG~~-  229 (251)
T COG0396         161 LEPKLAILDEPDSGLDIDALKIVAEGINALREE-GRGVLIITHYQRLLDY---------IKPDKVHVLYDGRIVKSGDP-  229 (251)
T ss_pred             cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CCeEEEEecHHHHHhh---------cCCCEEEEEECCEEEecCCH-
Confidence            8999999999977765      56677788876 9999999999887763         12599999999 99999999 


Q ss_pred             eee
Q 023563          227 FFT  229 (280)
Q Consensus       227 ~~~  229 (280)
                      ++.
T Consensus       230 el~  232 (251)
T COG0396         230 ELA  232 (251)
T ss_pred             HHH
Confidence            554

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.92  E-value=1.5e-25  Score=194.23  Aligned_cols=143  Identities=17%  Similarity=0.155  Sum_probs=96.5

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----cccccccee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGLDSI  125 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~~~v  125 (280)
                      ||+++|++++|+++.+|+++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....     ..+..++++
T Consensus         1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~   79 (200)
T PRK13540          1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLL-KLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV   79 (200)
T ss_pred             CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence            58999999999988999999999999999999999999999999 99999842 222222211110     001112222


Q ss_pred             eeecccc----------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH-
Q 023563          126 VTHDGVK----------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE-  168 (280)
Q Consensus       126 ~~~~~~~----------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~-  168 (280)
                      ++.....                      ...+...++....++.              +++++.+|++||||||++.. 
T Consensus        80 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD  159 (200)
T PRK13540         80 GHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD  159 (200)
T ss_pred             ccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence            2211000                      0001111111111111              67899999999999996654 


Q ss_pred             -----HHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          169 -----DLYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       169 -----~i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                           .+.+.|++++++ |.|||++||+...+.
T Consensus       160 ~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~  191 (200)
T PRK13540        160 ELSLLTIITKIQEHRAK-GGAVLLTSHQDLPLN  191 (200)
T ss_pred             HHHHHHHHHHHHHHHHc-CCEEEEEeCCchhcc
Confidence                 478888888665 999999999999886

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=6.2e-25  Score=183.89  Aligned_cols=158  Identities=15%  Similarity=0.112  Sum_probs=115.1

Q ss_pred             cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCcc-------c-
Q 023563           52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKD-------T-  118 (280)
Q Consensus        52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~-------~-  118 (280)
                      +|+++++++..+.    ..+|++|+|.|++||.++|+||||||||||+ .+++|+. ..+..+..+.+...       . 
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl-~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~   84 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLL-AVLAGLDDPSSGEVRLLGQPLHKLDEDARAA   84 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHH-HHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence            7999999998854    5799999999999999999999999999999 9999983 33444444333211       0 


Q ss_pred             --ccccceeeeeccccccc---------------------------ccccCchHHH--------------HHHhhhhccC
Q 023563          119 --RYGLDSIVTHDGVKLPC---------------------------CALTTLSSFR--------------QKFGSDAYDQ  155 (280)
Q Consensus       119 --~~~~~~v~~~~~~~~~~---------------------------~~~~~l~~~~--------------~~~a~aL~~~  155 (280)
                        ...++.+||...+....                           +...++..-.              -..|||++..
T Consensus        85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~  164 (228)
T COG4181          85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR  164 (228)
T ss_pred             hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence              22345555533221111                           0011111100              0116799999


Q ss_pred             CCEEEEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          156 VDVIGIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       156 p~lLlLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      |++|+.||||-      ...+.+++-.+..+.|.|+|+||||...+.+           |+|.+.|.+ +++.
T Consensus       165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-----------c~R~~r~~~G~l~~  226 (228)
T COG4181         165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-----------CDRQLRLRSGRLVE  226 (228)
T ss_pred             CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-----------hhheeeeecceecc
Confidence            99999999954      4569999999999999999999999999985           999999998 7753

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.92  E-value=3.2e-25  Score=195.36  Aligned_cols=158  Identities=16%  Similarity=0.169  Sum_probs=105.5

Q ss_pred             CCCCCccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCe--------------
Q 023563           46 PKFIHSMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGR--------------  107 (280)
Q Consensus        46 ~~~~~~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~--------------  107 (280)
                      +....++|+++|++++|++   ..+|+++||+|++|++++|+||||||||||+ ++|+|+.. ...              
T Consensus         5 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~   83 (226)
T cd03248           5 PDHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVV-ALLENFYQPQGGQVLLDGKPISQYEH   83 (226)
T ss_pred             CCCcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCcEEEECCCchHHcCH
Confidence            3345678999999999975   3699999999999999999999999999999 99999832 112              


Q ss_pred             -----eEEEecCCcccc-cccceeee--eccc-c---ccc---------cccc--CchHHHHHH--------------hh
Q 023563          108 -----NVAVIKSNKDTR-YGLDSIVT--HDGV-K---LPC---------CALT--TLSSFRQKF--------------GS  150 (280)
Q Consensus       108 -----~i~~~~~~~~~~-~~~~~v~~--~~~~-~---~~~---------~~~~--~l~~~~~~~--------------a~  150 (280)
                           .+++++|..... ..+...+.  .... .   ...         +...  ++.....+.              ++
T Consensus        84 ~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lar  163 (226)
T cd03248          84 KYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIAR  163 (226)
T ss_pred             HHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence                 233333332110 00000000  0000 0   000         0000  111111111              57


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +++.+|++||||||+...      .+.+.|+++++  +.|+|++|||++++.           .||++++|++
T Consensus       164 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~-----------~~d~i~~l~~  223 (226)
T cd03248         164 ALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTVE-----------RADQILVLDG  223 (226)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHH-----------hCCEEEEecC
Confidence            899999999999997654      47788888754  689999999999984           6999999987

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.92  E-value=2.7e-25  Score=196.63  Aligned_cols=152  Identities=16%  Similarity=0.113  Sum_probs=105.4

Q ss_pred             eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-----CCeeEEEecCCc---cc-ccccceeeeeccc-cc---
Q 023563           67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-----KGRNVAVIKSNK---DT-RYGLDSIVTHDGV-KL---  133 (280)
Q Consensus        67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-----~g~~i~~~~~~~---~~-~~~~~~v~~~~~~-~~---  133 (280)
                      +++|+||+|++|++++|+||||||||||+ ++|+|+..     ....+.+.....   .. +..++++++.... ..   
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~   79 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTC-LAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF   79 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence            57899999999999999999999999999 99999853     233333221110   00 1122333322110 00   


Q ss_pred             -------------------------ccccccCch---HHHHHH--------------hhhhccCCCEEEEeCcccHH---
Q 023563          134 -------------------------PCCALTTLS---SFRQKF--------------GSDAYDQVDVIGIDEAQFFE---  168 (280)
Q Consensus       134 -------------------------~~~~~~~l~---~~~~~~--------------a~aL~~~p~lLlLDEP~~~~---  168 (280)
                                               ..+...++.   .+.++.              |++++.+|++||||||++..   
T Consensus        80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~  159 (230)
T TIGR02770        80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV  159 (230)
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence                                     001111222   111111              67899999999999997655   


Q ss_pred             ---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          169 ---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       169 ---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                         .+++.|++++++.|+|||++||+++++..          +||++++|++ +++..|+++++.
T Consensus       160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~  214 (230)
T TIGR02770       160 NQARVLKLLRELRQLFGTGILLITHDLGVVAR----------IADEVAVMDDGRIVERGTVKEIF  214 (230)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHH
Confidence               47788888876558999999999999976          8999999999 998889888876

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.92  E-value=3.6e-25  Score=192.25  Aligned_cols=151  Identities=19%  Similarity=0.250  Sum_probs=102.5

Q ss_pred             EEEcCceEEeCCe-----eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccc
Q 023563           53 VSPRPPLFSLQNR-----NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTR  119 (280)
Q Consensus        53 l~~~~ls~~y~~~-----~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~  119 (280)
                      |+++||+++|+++     .+|+++||+|++|++++|+||||||||||+ ++|+|+..        +| .+++++|+....
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl-~~i~G~~~~~~G~i~~~g-~i~~~~q~~~l~   78 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLL-SALLGELEKLSGSVSVPG-SIAYVSQEPWIQ   78 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhCcCCCCCCeEEEcC-EEEEEecCchhc
Confidence            4789999999764     699999999999999999999999999999 99999732        23 577777764321


Q ss_pred             -cccceee--e-e--cccccccccc----------------------cCchHH-HHH--HhhhhccCCCEEEEeCcccHH
Q 023563          120 -YGLDSIV--T-H--DGVKLPCCAL----------------------TTLSSF-RQK--FGSDAYDQVDVIGIDEAQFFE  168 (280)
Q Consensus       120 -~~~~~v~--~-~--~~~~~~~~~~----------------------~~l~~~-~~~--~a~aL~~~p~lLlLDEP~~~~  168 (280)
                       ..+...+  . .  ..........                      ..++.- ..+  .+++++.+|++||||||++..
T Consensus        79 ~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~L  158 (204)
T cd03250          79 NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAV  158 (204)
T ss_pred             cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence             0000000  0 0  0000000000                      011111 111  167899999999999997655


Q ss_pred             H------HHH-HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          169 D------LYD-FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       169 ~------i~~-~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      |      +++ +++++.++ |.|||++||+++++.           .||++++|++
T Consensus       159 D~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~-----------~~d~i~~l~~  202 (204)
T cd03250         159 DAHVGRHIFENCILGLLLN-NKTRILVTHQLQLLP-----------HADQIVVLDN  202 (204)
T ss_pred             CHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHh-----------hCCEEEEEeC
Confidence            3      444 34445454 899999999999886           4999999976

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.92  E-value=4.5e-26  Score=223.63  Aligned_cols=163  Identities=14%  Similarity=0.128  Sum_probs=113.0

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-------------e
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-------------N  108 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-------------~  108 (280)
                      .++|+++|+++     .+|+|+||+|++|++++|+||||||||||+ ++|+|+..        .|.             .
T Consensus       266 ~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~  339 (510)
T PRK15439        266 APVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELA-ETLYGLRPARGGRIMLNGKEINALSTAQRLARG  339 (510)
T ss_pred             CceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence            45899999994     269999999999999999999999999999 99999732        221             2


Q ss_pred             EEEecCCcc---cc--cccce-e--e--e------ecc----cccccccccCch-HHHHHH--------------hhhhc
Q 023563          109 VAVIKSNKD---TR--YGLDS-I--V--T------HDG----VKLPCCALTTLS-SFRQKF--------------GSDAY  153 (280)
Q Consensus       109 i~~~~~~~~---~~--~~~~~-v--~--~------~~~----~~~~~~~~~~l~-~~~~~~--------------a~aL~  153 (280)
                      ++|++|...   ..  ..+.. +  .  .      ...    .....+...++. ...++.              |++|+
T Consensus       340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~  419 (510)
T PRK15439        340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLE  419 (510)
T ss_pred             cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHh
Confidence            444444311   00  00000 0  0  0      000    000001111221 111111              67899


Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|++||||||++.+      .++++|++++++ |.|||++|||++++.+          +||++++|++ ++++.|+++
T Consensus       420 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~----------~~d~i~~l~~G~i~~~~~~~  488 (510)
T PRK15439        420 ASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQ----------MADRVLVMHQGEISGALTGA  488 (510)
T ss_pred             hCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEEEccc
Confidence            999999999997654      488889998876 9999999999999987          9999999999 999888887


Q ss_pred             eee
Q 023563          227 FFT  229 (280)
Q Consensus       227 ~~~  229 (280)
                      ++.
T Consensus       489 ~~~  491 (510)
T PRK15439        489 AIN  491 (510)
T ss_pred             cCC
Confidence            665

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.92  E-value=9.6e-25  Score=191.54  Aligned_cols=158  Identities=17%  Similarity=0.106  Sum_probs=107.3

Q ss_pred             EEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------eeEE
Q 023563           53 VSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RNVA  110 (280)
Q Consensus        53 l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~i~  110 (280)
                      |+++|++++|++  +.+|+|+||+|++|++++|+||||||||||+ ++|+|+..        +|            +.++
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   81 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLL-LALFRLVELSSGSILIDGVDISKIGLHDLRSRIS   81 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence            789999999964  4799999999999999999999999999999 99999732        12            1234


Q ss_pred             EecCCccccc-ccceeeeec-c----cccccccccCchHHHH-----------------------H--HhhhhccCCCEE
Q 023563          111 VIKSNKDTRY-GLDSIVTHD-G----VKLPCCALTTLSSFRQ-----------------------K--FGSDAYDQVDVI  159 (280)
Q Consensus       111 ~~~~~~~~~~-~~~~v~~~~-~----~~~~~~~~~~l~~~~~-----------------------~--~a~aL~~~p~lL  159 (280)
                      +++|...... .+...+... .    .....+...++.++..                       +  .+++++.+|++|
T Consensus        82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll  161 (221)
T cd03244          82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL  161 (221)
T ss_pred             EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            4443322100 000000000 0    0000011112222221                       1  167899999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      |||||+...      .++++|+++.+  +.|||++||+++++.           .||++++|++ +++..|+
T Consensus       162 llDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~-----------~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         162 VLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTII-----------DSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHh-----------hCCEEEEEECCeEEecCC
Confidence            999996544      47788887753  689999999999885           5999999999 8776654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.92  E-value=2.3e-25  Score=242.79  Aligned_cols=174  Identities=18%  Similarity=0.145  Sum_probs=124.5

Q ss_pred             CCccEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----ccccc
Q 023563           49 IHSMVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRY  120 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~  120 (280)
                      ..+.|+++||+|.|+  ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..+     ...+.
T Consensus       925 ~~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLL-kiLaGLl~PtsG~I~i~G~dI~~~~~~~r~ 1003 (2272)
T TIGR01257       925 LVPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTL-SILTGLLPPTSGTVLVGGKDIETNLDAVRQ 1003 (2272)
T ss_pred             CCceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHH-HHHhcCCCCCceEEEECCEECcchHHHHhh
Confidence            345899999999995  57899999999999999999999999999999 99999832 22222111100     01122


Q ss_pred             ccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563          121 GLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVI  159 (280)
Q Consensus       121 ~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lL  159 (280)
                      .+++++|+.....                           ..+...++.+..++.              |+||+.+|++|
T Consensus      1004 ~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVL 1083 (2272)
T TIGR01257      1004 SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVV 1083 (2272)
T ss_pred             cEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            2333333221110                           011112232222211              67899999999


Q ss_pred             EEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563          160 GIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK  232 (280)
Q Consensus       160 lLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~  232 (280)
                      |||||++.      ..++++|++++ + |+|||++||+++++.+          +||||++|++ ++++.|++.++..+.
T Consensus      1084 LLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmdea~~----------laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257      1084 VLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMDEADL----------LGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEecCHHHHHHhc
Confidence            99999765      45889999884 4 9999999999999987          9999999999 999999999887555


Q ss_pred             cCC
Q 023563          233 TEE  235 (280)
Q Consensus       233 ~~~  235 (280)
                      ..+
T Consensus      1152 g~g 1154 (2272)
T TIGR01257      1152 GTG 1154 (2272)
T ss_pred             CCc
Confidence            443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.92  E-value=2.7e-25  Score=206.66  Aligned_cols=175  Identities=17%  Similarity=0.207  Sum_probs=126.1

Q ss_pred             CccEEEcCceEEeC----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------------------
Q 023563           50 HSMVSPRPPLFSLQ----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------------------  104 (280)
Q Consensus        50 ~~~l~~~~ls~~y~----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------------------  104 (280)
                      .++|+++|+++.|.    ...++++|||+|.+||.++|+|.||||||-.. +.+.++..                     
T Consensus         4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa-~sim~LLp~~~~~~~sg~i~f~G~dll~~   82 (534)
T COG4172           4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTA-LSILGLLPSPAAAHPSGSILFDGEDLLAA   82 (534)
T ss_pred             CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHH-HHHHHhcCCCcccCccceeEEcChhhhcC
Confidence            46899999999995    57899999999999999999999999999999 66666521                     


Q ss_pred             --------CCeeEEEecCCcccccc----cc----eee-eeccc--------ccccccccCchHHH---HHH--------
Q 023563          105 --------KGRNVAVIKSNKDTRYG----LD----SIV-THDGV--------KLPCCALTTLSSFR---QKF--------  148 (280)
Q Consensus       105 --------~g~~i~~~~~~~~~~~~----~~----~v~-~~~~~--------~~~~~~~~~l~~~~---~~~--------  148 (280)
                              .|.+|+.++|.+....+    ++    ... -+.+.        ..+.+..+++.+-.   +.|        
T Consensus        83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq  162 (534)
T COG4172          83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ  162 (534)
T ss_pred             CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence                    23344444444322110    00    000 00000        01111222221111   111        


Q ss_pred             ------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          149 ------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       149 ------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                            |.||+++|++||.||||+++      +++++|+++.++.|.+++++|||+..+.+          +||||++|.
T Consensus       163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~----------~ADrV~VM~  232 (534)
T COG4172         163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRK----------FADRVYVMQ  232 (534)
T ss_pred             hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHH----------hhhhEEEEe
Confidence                  67899999999999997765      48999999999999999999999999998          999999999


Q ss_pred             c-eeccccCcceeeeeecCC
Q 023563          217 A-RCEFCGKRAFFTLRKTEE  235 (280)
Q Consensus       217 ~-~i~~~g~~~~~~~~~~~~  235 (280)
                      . +++..|+.+.++..+..+
T Consensus       233 ~G~ivE~~~t~~lF~~PqHp  252 (534)
T COG4172         233 HGEIVETGTTETLFAAPQHP  252 (534)
T ss_pred             ccEEeecCcHHHHhhCCCCh
Confidence            9 999999999998554433

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.92  E-value=7.4e-25  Score=197.12  Aligned_cols=167  Identities=14%  Similarity=0.072  Sum_probs=114.6

Q ss_pred             CCccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-----------
Q 023563           49 IHSMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-----------  107 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-----------  107 (280)
                      ....|+++|++++|++  +.+|+++||+|++|++++|+||||||||||+ ++|+|+..        +|.           
T Consensus        16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   94 (257)
T cd03288          16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLS-LAFFRMVDIFDGKIVIDGIDISKLPLHTLR   94 (257)
T ss_pred             CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHH-HHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence            3457999999999976  5799999999999999999999999999999 99999732        121           


Q ss_pred             -eEEEecCCccccc-ccceeeeeccc-----ccccccccCchHH-----------------------HHH--HhhhhccC
Q 023563          108 -NVAVIKSNKDTRY-GLDSIVTHDGV-----KLPCCALTTLSSF-----------------------RQK--FGSDAYDQ  155 (280)
Q Consensus       108 -~i~~~~~~~~~~~-~~~~v~~~~~~-----~~~~~~~~~l~~~-----------------------~~~--~a~aL~~~  155 (280)
                       .+++++|...... .+...+.....     ....+...++..+                       ..+  .+++++.+
T Consensus        95 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  174 (257)
T cd03288          95 SRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK  174 (257)
T ss_pred             hhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence             2344444321100 00000000000     0000000111111                       111  16789999


Q ss_pred             CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      |++||||||+...      .+++.++++. + +.|||++||+++++.           .||++++|++ +++..|+++++
T Consensus       175 p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~-----------~~dri~~l~~G~i~~~g~~~~~  241 (257)
T cd03288         175 SSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVSTIL-----------DADLVLVLSRGILVECDTPENL  241 (257)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHHHH-----------hCCEEEEEECCEEEEeCCHHHH
Confidence            9999999996643      4677777763 3 899999999999885           5999999999 99999988877


Q ss_pred             e
Q 023563          229 T  229 (280)
Q Consensus       229 ~  229 (280)
                      .
T Consensus       242 ~  242 (257)
T cd03288         242 L  242 (257)
T ss_pred             H
Confidence            5

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.92  E-value=6e-25  Score=194.67  Aligned_cols=150  Identities=20%  Similarity=0.114  Sum_probs=100.8

Q ss_pred             eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeE--------------EEecCCccccc--ccceeee---
Q 023563           68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNV--------------AVIKSNKDTRY--GLDSIVT---  127 (280)
Q Consensus        68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i--------------~~~~~~~~~~~--~~~~v~~---  127 (280)
                      |+++||+|++|++++|+||||||||||+ ++|+|+.. ....+              ++++|......  .+...+.   
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~   79 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLL-NLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAV   79 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHH
Confidence            5799999999999999999999999999 99999843 22222              22333211100  0000000   


Q ss_pred             e---ccc--------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HHHHHHHH
Q 023563          128 H---DGV--------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLYDFCRE  176 (280)
Q Consensus       128 ~---~~~--------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~  176 (280)
                      .   ...        ....+...++....++.              +++|+.+|++||||||++..      .+++.|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  159 (230)
T TIGR01184        80 DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ  159 (230)
T ss_pred             HhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence            0   000        00011112232222211              56899999999999997654      57888888


Q ss_pred             HHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          177 AADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       177 l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      ++++.|+|||++|||++++.+          +||++++|++ +++..|++.++
T Consensus       160 ~~~~~~~tii~~sH~~~~~~~----------~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       160 IWEEHRVTVLMVTHDVDEALL----------LSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             HHHhcCCEEEEEeCCHHHHHH----------hcCEEEEEeCCcEecccCceec
Confidence            876558999999999999876          9999999999 88888876655

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.92  E-value=6.8e-25  Score=218.42  Aligned_cols=163  Identities=17%  Similarity=0.137  Sum_probs=118.2

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C-C-----eeEEEecCCcccccc-
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K-G-----RNVAVIKSNKDTRYG-  121 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~-g-----~~i~~~~~~~~~~~~-  121 (280)
                      .++|+++|++++|++. .|+++||+|++||+++|+||||||||||+ ++|+|+.. . |     ..++|++|+...... 
T Consensus       338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLl-k~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~  415 (590)
T PRK13409        338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFA-KLLAGVLKPDEGEVDPELKISYKPQYIKPDYDG  415 (590)
T ss_pred             ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEEeeeEEEecccccCCCCC
Confidence            4689999999999875 49999999999999999999999999999 99999843 1 2     245677776432111 


Q ss_pred             -cceeeee--cc-----cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HHHHH
Q 023563          122 -LDSIVTH--DG-----VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLYDF  173 (280)
Q Consensus       122 -~~~v~~~--~~-----~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~~  173 (280)
                       +...+..  ..     .....+...++....++.              |++|+.+|++||||||++.+      .++++
T Consensus       416 tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~  495 (590)
T PRK13409        416 TVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKA  495 (590)
T ss_pred             cHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence             1110000  00     001112223333333222              67899999999999997654      57888


Q ss_pred             HHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccC
Q 023563          174 CREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGK  224 (280)
Q Consensus       174 l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~  224 (280)
                      |++++++.|.|||++|||++++.+          +||++++|++++...|.
T Consensus       496 l~~l~~~~g~tviivsHD~~~~~~----------~aDrvivl~~~~~~~g~  536 (590)
T PRK13409        496 IRRIAEEREATALVVDHDIYMIDY----------ISDRLMVFEGEPGKHGH  536 (590)
T ss_pred             HHHHHHhCCCEEEEEeCCHHHHHH----------hCCEEEEEcCcceeeee
Confidence            999987669999999999999986          99999999886555555

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.92  E-value=1.7e-25  Score=222.34  Aligned_cols=164  Identities=16%  Similarity=0.139  Sum_probs=115.0

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i  109 (280)
                      -|+++||+++|++  +.+|+|+||+|++|+.++|+||||||||||+ ++|.|+..        +|.            .+
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl-~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i  419 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIA-NLLTRFYDIDEGEILLDGHDLRDYTLASLRNQV  419 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHH-HHHHhccCCCCceEEECCEEhhhcCHHHHHhhc
Confidence            4999999999964  6799999999999999999999999999999 99999732        222            23


Q ss_pred             EEecCCccc-----cccccee-ee--ecccccccccccCchHHH-----------------------HHH--hhhhccCC
Q 023563          110 AVIKSNKDT-----RYGLDSI-VT--HDGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQV  156 (280)
Q Consensus       110 ~~~~~~~~~-----~~~~~~v-~~--~~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p  156 (280)
                      ++++|+...     +.++... ..  .+.....++...++.++.                       +|.  ||+++.+|
T Consensus       420 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~  499 (582)
T PRK11176        420 ALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS  499 (582)
T ss_pred             eEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence            444444221     0001000 00  000000011111222211                       111  68999999


Q ss_pred             CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++|||||||+..|      +++.|.++.+  ++|+|+|||+++.+.           .||+|++|++ ++++.|+.+++.
T Consensus       500 ~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~~~~-----------~~D~Ii~l~~g~i~e~g~~~~l~  566 (582)
T PRK11176        500 PILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-----------KADEILVVEDGEIVERGTHAELL  566 (582)
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-----------hCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999987754      6677766643  799999999998876           7999999999 999999998876

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.92  E-value=3.7e-25  Score=220.21  Aligned_cols=164  Identities=16%  Similarity=0.125  Sum_probs=114.6

Q ss_pred             cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe-------------------eEEE
Q 023563           52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR-------------------NVAV  111 (280)
Q Consensus        52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~-------------------~i~~  111 (280)
                      -|+++||++.| +++++|+|+||+|++|+.++|+||||||||||+ ++|.|+.....                   .+++
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~-~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~  427 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLL-NALLGFLPYQGSLKINGIELRELDPESWRKHLSW  427 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCcEEEECCEecccCCHHHHHhheEE
Confidence            49999999755 567899999999999999999999999999999 99999753222                   2344


Q ss_pred             ecCCccc-----ccccceeee--ecccccccccccCchHHH-----------------------HHH--hhhhccCCCEE
Q 023563          112 IKSNKDT-----RYGLDSIVT--HDGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQVDVI  159 (280)
Q Consensus       112 ~~~~~~~-----~~~~~~v~~--~~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p~lL  159 (280)
                      ++|++..     +.++...-.  .+.....++...++.++.                       +|.  |||++.+|++|
T Consensus       428 v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Il  507 (588)
T PRK11174        428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLL  507 (588)
T ss_pred             ecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            4444321     000000000  000000011111222111                       111  78999999999


Q ss_pred             EEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          160 GIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       160 lLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||+..|      +.+.|.++.+  ++|+|++||+++.+.           .||+|++|++ ++++.|+.+++.
T Consensus       508 iLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl~~i~-----------~aD~Iivl~~G~i~e~G~~~eL~  571 (588)
T PRK11174        508 LLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLA-----------QWDQIWVMQDGQIVQQGDYAELS  571 (588)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecChHHHH-----------hCCEEEEEeCCeEeecCCHHHHH
Confidence            9999987654      6677777653  899999999999886           6999999999 999999998886

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.92  E-value=1e-24  Score=202.77  Aligned_cols=174  Identities=14%  Similarity=0.086  Sum_probs=128.0

Q ss_pred             CCCccEEEcCceEEeC-----------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc
Q 023563           48 FIHSMVSPRPPLFSLQ-----------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK  116 (280)
Q Consensus        48 ~~~~~l~~~~ls~~y~-----------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~  116 (280)
                      ...++++.+++.+.|.           ...++++|||++++||.+||+|.||||||||- +.|.++......|.|..+..
T Consensus       272 ~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG-~allrL~~s~G~I~F~G~~i  350 (534)
T COG4172         272 DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLG-LALLRLIPSQGEIRFDGQDI  350 (534)
T ss_pred             CCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHH-HHHHhhcCcCceEEECCccc
Confidence            3456899999999883           14689999999999999999999999999999 88887754444444443332


Q ss_pred             cc---------ccccceeeeeccc-ccc------------------------------cccccCch-------------H
Q 023563          117 DT---------RYGLDSIVTHDGV-KLP------------------------------CCALTTLS-------------S  143 (280)
Q Consensus       117 ~~---------~~~~~~v~~~~~~-~~~------------------------------~~~~~~l~-------------~  143 (280)
                      ..         |..+..+||...- +.+                              ++..++++             .
T Consensus       351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGG  430 (534)
T COG4172         351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG  430 (534)
T ss_pred             cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcc
Confidence            21         2223334431110 000                              11111211             0


Q ss_pred             HHHHH--hhhhccCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563          144 FRQKF--GSDAYDQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL  215 (280)
Q Consensus       144 ~~~~~--a~aL~~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L  215 (280)
                      .+.+.  |||++.+|++++|||||+.+|      ++++|+++.+++|.+.+|+|||+..+..          +||+|++|
T Consensus       431 QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrA----------l~~~viVm  500 (534)
T COG4172         431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRA----------LCHRVIVM  500 (534)
T ss_pred             hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHH----------hhceEEEE
Confidence            11111  689999999999999988764      8999999999999999999999999986          99999999


Q ss_pred             ec-eeccccCcceeeeee
Q 023563          216 TA-RCEFCGKRAFFTLRK  232 (280)
Q Consensus       216 ~~-~i~~~g~~~~~~~~~  232 (280)
                      ++ +++..|+.++++..+
T Consensus       501 ~~GkiVE~G~~~~if~~P  518 (534)
T COG4172         501 RDGKIVEQGPTEAVFANP  518 (534)
T ss_pred             eCCEEeeeCCHHHHhcCC
Confidence            99 999999999999544

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.92  E-value=6.2e-25  Score=222.42  Aligned_cols=162  Identities=20%  Similarity=0.166  Sum_probs=112.6

Q ss_pred             cEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563           52 MVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i  109 (280)
                      -|+++||+++|+  ++++|+|+||+|++||.++|+||||||||||+ ++|.|+..        +|.            .+
T Consensus       451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl-klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i  529 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLL-RLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL  529 (686)
T ss_pred             eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence            599999999995  36799999999999999999999999999999 99999732        333            23


Q ss_pred             EEecCCcccc-----cccceee-eecccccccccccCchHHH-----------------------HHH--hhhhccCCCE
Q 023563          110 AVIKSNKDTR-----YGLDSIV-THDGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQVDV  158 (280)
Q Consensus       110 ~~~~~~~~~~-----~~~~~v~-~~~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p~l  158 (280)
                      ++++|+...-     .++...- ..+.....++...++.++.                       ++.  |||++.+|++
T Consensus       530 ~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i  609 (686)
T TIGR03797       530 GVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI  609 (686)
T ss_pred             EEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            4444443210     0000000 0000000111111222221                       111  7899999999


Q ss_pred             EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||||+..|      +.+.|+++    ++|+|++||+++.+.           .||+|++|++ ++++.|+.+++.
T Consensus       610 LiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~-----------~~D~Iivl~~G~iv~~G~~~~Ll  672 (686)
T TIGR03797       610 LLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIR-----------NADRIYVLDAGRVVQQGTYDELM  672 (686)
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence            99999988654      44444332    689999999999886           6999999999 999999998876

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.92  E-value=1.5e-25  Score=219.30  Aligned_cols=163  Identities=13%  Similarity=0.117  Sum_probs=112.7

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee--------------------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN--------------------  108 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~--------------------  108 (280)
                      .++|+++|+++     .+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....                    
T Consensus       255 ~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl-~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~  328 (501)
T PRK10762        255 EVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELM-KVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG  328 (501)
T ss_pred             CcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence            35899999985     379999999999999999999999999999 99999732 1222                    


Q ss_pred             EEEecCCcc---cc--cccceeee---e---c---c---------cccccccccCch-HHHHH--------------Hhh
Q 023563          109 VAVIKSNKD---TR--YGLDSIVT---H---D---G---------VKLPCCALTTLS-SFRQK--------------FGS  150 (280)
Q Consensus       109 i~~~~~~~~---~~--~~~~~v~~---~---~---~---------~~~~~~~~~~l~-~~~~~--------------~a~  150 (280)
                      ++|++|...   ..  ..+...+.   .   .   .         .....+...++. ...++              +|+
T Consensus       329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~  408 (501)
T PRK10762        329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR  408 (501)
T ss_pred             CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence            344444321   00  00000000   0   0   0         000001111221 11111              167


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +|+.+|++||||||++.+      .++++|++++++ |.|||++|||++++.+          +||++++|++ +++..|
T Consensus       409 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~----------~~d~v~~l~~G~i~~~~  477 (501)
T PRK10762        409 GLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLG----------MSDRILVMHEGRISGEF  477 (501)
T ss_pred             HHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHh----------hCCEEEEEECCEEEEEe
Confidence            899999999999997654      588999998876 9999999999999986          9999999999 888888


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       478 ~~~~~~  483 (501)
T PRK10762        478 TREQAT  483 (501)
T ss_pred             ccccCC
Confidence            877654

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.9e-25  Score=216.77  Aligned_cols=163  Identities=15%  Similarity=0.159  Sum_probs=110.6

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCee-------------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRN-------------  108 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~-------------  108 (280)
                      .++|+++|++++|  +.+|+++||+|++||+++|+||||||||||+ ++|.|+..        .|.+             
T Consensus       248 ~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~  324 (491)
T PRK10982        248 EVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIV-ETLFGIREKSAGTITLHGKKINNHNANEAINHG  324 (491)
T ss_pred             CcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHH-HHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence            3589999999984  4699999999999999999999999999999 99999732        2222             


Q ss_pred             EEEecCCccc----c-cccc--eeeeec-------ccc---------cccccccCch-HHHHH--------------Hhh
Q 023563          109 VAVIKSNKDT----R-YGLD--SIVTHD-------GVK---------LPCCALTTLS-SFRQK--------------FGS  150 (280)
Q Consensus       109 i~~~~~~~~~----~-~~~~--~v~~~~-------~~~---------~~~~~~~~l~-~~~~~--------------~a~  150 (280)
                      +++++|....    . ..+.  .+....       +..         ...+...++. ...++              .|+
T Consensus       325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~  404 (491)
T PRK10982        325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGR  404 (491)
T ss_pred             CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHH
Confidence            2233332110    0 0000  000000       000         0000001110 00011              167


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +++.+|++|||||||+..      .++++|.++.++ |.|||++|||++++.+          +||++++|++ +++..+
T Consensus       405 al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~----------~~d~v~~l~~g~i~~~~  473 (491)
T PRK10982        405 WLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLG----------ITDRILVMSNGLVAGIV  473 (491)
T ss_pred             HHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChHHHHh----------hCCEEEEEECCEEEEEE
Confidence            899999999999997654      478888888876 9999999999999986          9999999998 887666


Q ss_pred             Ccc
Q 023563          224 KRA  226 (280)
Q Consensus       224 ~~~  226 (280)
                      ++.
T Consensus       474 ~~~  476 (491)
T PRK10982        474 DTK  476 (491)
T ss_pred             ccc
Confidence            554

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.92  E-value=3.2e-25  Score=224.74  Aligned_cols=164  Identities=20%  Similarity=0.236  Sum_probs=115.6

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i  109 (280)
                      -|+++||+++|++  +++|+|+||+|++||.++|+||||||||||+ ++|.|+..        +|.            .+
T Consensus       463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLl-klL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i  541 (694)
T TIGR03375       463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLL-KLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI  541 (694)
T ss_pred             eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence            5999999999963  5699999999999999999999999999999 99999732        222            34


Q ss_pred             EEecCCccc-----ccccceeee--ecccccccccccCchHH-----------------------HHHH--hhhhccCCC
Q 023563          110 AVIKSNKDT-----RYGLDSIVT--HDGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVD  157 (280)
Q Consensus       110 ~~~~~~~~~-----~~~~~~v~~--~~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~  157 (280)
                      ++++|+...     +.++...-.  .+.....++...++.++                       +++.  |||++.+|+
T Consensus       542 ~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~  621 (694)
T TIGR03375       542 GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP  621 (694)
T ss_pred             EEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            444444321     000000000  00000000111111111                       1221  789999999


Q ss_pred             EEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +|||||||+..|      +.+.|.++.+  ++|+|++||+++.+.           .||+|++|++ +++..|+.+++.
T Consensus       622 iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~~~~-----------~~D~iivl~~G~i~e~G~~~eLl  687 (694)
T TIGR03375       622 ILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLLD-----------LVDRIIVMDNGRIVADGPKDQVL  687 (694)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-----------hCCEEEEEeCCEEEeeCCHHHHH
Confidence            999999987653      6777777653  899999999999886           7999999999 999999999886

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.92  E-value=1.1e-24  Score=215.58  Aligned_cols=168  Identities=15%  Similarity=0.127  Sum_probs=113.6

Q ss_pred             ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-------CeeEEEecCCccccc
Q 023563           51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-------GRNVAVIKSNKDTRY  120 (280)
Q Consensus        51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-------g~~i~~~~~~~~~~~  120 (280)
                      +||+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..  .       ...+++++|......
T Consensus         3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl-~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~   81 (552)
T TIGR03719         3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLL-RIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP   81 (552)
T ss_pred             EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence            4899999999998 78899999999999999999999999999999 99999732  1       235777777643211


Q ss_pred             --ccceeee----e-----------------cccc---------------------------cccccccCch--------
Q 023563          121 --GLDSIVT----H-----------------DGVK---------------------------LPCCALTTLS--------  142 (280)
Q Consensus       121 --~~~~v~~----~-----------------~~~~---------------------------~~~~~~~~l~--------  142 (280)
                        .+...+.    .                 ....                           ...+...++.        
T Consensus        82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  161 (552)
T TIGR03719        82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK  161 (552)
T ss_pred             CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhh
Confidence              1100000    0                 0000                           0000000110        


Q ss_pred             ---HHHHH--HhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563          143 ---SFRQK--FGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL  215 (280)
Q Consensus       143 ---~~~~~--~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L  215 (280)
                         ....+  .|++|+.+|++||||||++.+|.  .+.+.++..+.+.|||++|||++++.+          +||++++|
T Consensus       162 LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~----------~~d~v~~l  231 (552)
T TIGR03719       162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDN----------VAGWILEL  231 (552)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHh----------hcCeEEEE
Confidence               00111  16789999999999999877641  222333322335699999999999986          99999999


Q ss_pred             ec-eec-cccCcceee
Q 023563          216 TA-RCE-FCGKRAFFT  229 (280)
Q Consensus       216 ~~-~i~-~~g~~~~~~  229 (280)
                      ++ +++ +.|+.+++.
T Consensus       232 ~~g~i~~~~g~~~~~~  247 (552)
T TIGR03719       232 DRGRGIPWEGNYSSWL  247 (552)
T ss_pred             ECCEEEEecCCHHHHH
Confidence            98 754 678877644

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.92  E-value=2.4e-25  Score=226.14  Aligned_cols=162  Identities=21%  Similarity=0.209  Sum_probs=113.4

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------eeE
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RNV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~i  109 (280)
                      .|+++||+++|++  +++|+|+||+|++||.++|+||||||||||+ ++|.|+..        +|            +.+
T Consensus       477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl-klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i  555 (710)
T TIGR03796       477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA-KLVAGLYQPWSGEILFDGIPREEIPREVLANSV  555 (710)
T ss_pred             eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence            5999999999964  6799999999999999999999999999999 99999732        22            234


Q ss_pred             EEecCCccc-----ccccceeee--ecccccccccccCchHH-----------------------HHHH--hhhhccCCC
Q 023563          110 AVIKSNKDT-----RYGLDSIVT--HDGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVD  157 (280)
Q Consensus       110 ~~~~~~~~~-----~~~~~~v~~--~~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~  157 (280)
                      ++++|+...     +.++...-.  .+.....++...++.++                       +++.  |||++.+|+
T Consensus       556 ~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~  635 (710)
T TIGR03796       556 AMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS  635 (710)
T ss_pred             eEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence            455554321     000100000  00000000111111111                       1121  789999999


Q ss_pred             EEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +|||||||+..|      +++.|+   + .++|+|++||+++.+.           .||+|++|++ +++..|+.+++.
T Consensus       636 iliLDEptS~LD~~te~~i~~~l~---~-~~~T~IiitHrl~~i~-----------~~D~Iivl~~G~i~~~G~~~~Ll  699 (710)
T TIGR03796       636 ILILDEATSALDPETEKIIDDNLR---R-RGCTCIIVAHRLSTIR-----------DCDEIIVLERGKVVQRGTHEELW  699 (710)
T ss_pred             EEEEECccccCCHHHHHHHHHHHH---h-cCCEEEEEecCHHHHH-----------hCCEEEEEeCCEEEEecCHHHHH
Confidence            999999988764      444443   3 4899999999999886           6999999999 999999999887

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.4e-25  Score=216.12  Aligned_cols=164  Identities=18%  Similarity=0.156  Sum_probs=112.3

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee--------------------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN--------------------  108 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~--------------------  108 (280)
                      .+.++++|++..    .+++|+||+|++|++++|+||||||||||+ ++|+|+.. ....                    
T Consensus       255 ~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl-k~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~  329 (501)
T PRK11288        255 EVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELM-KLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG  329 (501)
T ss_pred             CcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHH-HHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence            347999999842    489999999999999999999999999999 99999732 2222                    


Q ss_pred             EEEecCCcc--ccc---ccce-eee--ec-----c----------cccccccccCch-HHHHH--------------Hhh
Q 023563          109 VAVIKSNKD--TRY---GLDS-IVT--HD-----G----------VKLPCCALTTLS-SFRQK--------------FGS  150 (280)
Q Consensus       109 i~~~~~~~~--~~~---~~~~-v~~--~~-----~----------~~~~~~~~~~l~-~~~~~--------------~a~  150 (280)
                      +++++|...  ..+   .+.. +..  ..     +          .....+...++. +..++              .|+
T Consensus       330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~  409 (501)
T PRK11288        330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR  409 (501)
T ss_pred             CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence            233333321  000   0000 000  00     0          000001111110 11111              156


Q ss_pred             hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +++.+|++||||||++.+      +++++|.+++++ |.|||++|||++++.+          +||++++|++ ++++.|
T Consensus       410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~----------~~d~i~~l~~g~i~~~~  478 (501)
T PRK11288        410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLG----------VADRIVVMREGRIAGEL  478 (501)
T ss_pred             HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHh----------hCCEEEEEECCEEEEEE
Confidence            899999999999997654      588888998876 9999999999999987          9999999999 999998


Q ss_pred             Ccceee
Q 023563          224 KRAFFT  229 (280)
Q Consensus       224 ~~~~~~  229 (280)
                      +++++.
T Consensus       479 ~~~~~~  484 (501)
T PRK11288        479 AREQAT  484 (501)
T ss_pred             ccccCC
Confidence            887765

>PTZ00293 thymidine kinase; Provisional

Probab=99.92  E-value=4.9e-24  Score=185.71  Aligned_cols=174  Identities=46%  Similarity=0.765  Sum_probs=152.1

Q ss_pred             eCceEEEEEcCCCCcHHH-HHHHHHhcchhCCeeEEEecCCccccc-ccceeeeecccccccccccCchHHHHHHhhhhc
Q 023563           76 PSGEIHVIVGPMFAGKTT-TLLRRIQAETQKGRNVAVIKSNKDTRY-GLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAY  153 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKST-Ll~~~l~gl~~~g~~i~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~  153 (280)
                      ..|.+..+.||+|||||| || +.+..+...|+++..+.+..+.|+ ....+..+.+...++....++.++...+     
T Consensus         2 ~~G~i~vi~GpMfSGKTteLL-r~i~~y~~ag~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~a~~v~~~~e~~~~~-----   75 (211)
T PTZ00293          2 YRGTISVIIGPMFSGKTTELM-RLVKRFTYSEKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVSKLKEVLETA-----   75 (211)
T ss_pred             CceEEEEEECCCCChHHHHHH-HHHHHHHHcCCceEEEEecccccCCCCCcEEecCCCcceeEEcCCHHHHHHhc-----
Confidence            368999999999999999 66 889999899999999999888887 5556777777766666666666665432     


Q ss_pred             cCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeec
Q 023563          154 DQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKT  233 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~  233 (280)
                      .++++|++||.+|..++.+++..+++. |+.||+.++|.++-.++|+++.+|+++||+|.-|+..|..||.++.+..|..
T Consensus        76 ~~~dvI~IDEaQFf~~i~~~~~~l~~~-g~~VivaGLd~Df~~~~F~~~~~Ll~~AD~V~kl~aiC~~CG~~A~~t~R~~  154 (211)
T PTZ00293         76 KNYDVIAIDEGQFFPDLVEFSEAAANL-GKIVIVAALDGTFQRKPFGQILNLIPLAERVTKLTAVCMFCGKEASFSKRIV  154 (211)
T ss_pred             cCCCEEEEEchHhhHhHHHHHHHHHHC-CCeEEEEecCcccccCcCccHHHHHHhhCEEEEcceEchhhCCcceeEEEEc
Confidence            578999999999988899998888875 9999999999999999999999999999999999999988999999999988


Q ss_pred             CCCcEEEeCCccceeeeccchhc
Q 023563          234 EETKTELIGGSDIYMPVCRQHYV  256 (280)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~  256 (280)
                      ++....++|+.+.|.++||+||.
T Consensus       155 ~~~~~v~IGg~e~Y~a~CR~c~~  177 (211)
T PTZ00293        155 QSEQIELIGGEDKYIATCRKCFR  177 (211)
T ss_pred             CCCCEEEECCcccEEehhhhhhh
Confidence            87777789999999999999994

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.91  E-value=5.2e-25  Score=219.45  Aligned_cols=164  Identities=14%  Similarity=0.117  Sum_probs=116.2

Q ss_pred             cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------eeEE
Q 023563           52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RNVA  110 (280)
Q Consensus        52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~i~  110 (280)
                      -|+++|++++|++ +.+|+|+||+|++||.++|+|+||||||||+ ++|.|+..        +|            +.++
T Consensus       340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl-~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~  418 (592)
T PRK10790        340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLA-SLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA  418 (592)
T ss_pred             eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence            4899999999964 6799999999999999999999999999999 99999732        22            2344


Q ss_pred             EecCCccc-----ccccceeee-ecccccccccccCchHH-----------------------HHHH--hhhhccCCCEE
Q 023563          111 VIKSNKDT-----RYGLDSIVT-HDGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVDVI  159 (280)
Q Consensus       111 ~~~~~~~~-----~~~~~~v~~-~~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~lL  159 (280)
                      +++|+...     +.++...-. .+.....++...++.++                       ++|.  ||||+.+|++|
T Consensus       419 ~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il  498 (592)
T PRK10790        419 MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL  498 (592)
T ss_pred             EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence            55554321     111100000 00000011111122111                       1222  78999999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||++..      .+.+.|+++.+  ++|+|++||+++...           .||+|++|++ ++++.|+++++.
T Consensus       499 llDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l~-----------~~D~ii~l~~G~i~~~G~~~~L~  562 (592)
T PRK10790        499 ILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIV-----------EADTILVLHRGQAVEQGTHQQLL  562 (592)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-----------hCCEEEEEECCEEEEEcCHHHHH
Confidence            999997764      36777777654  799999999998876           6999999999 999999999886

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.91  E-value=8.6e-24  Score=176.32  Aligned_cols=141  Identities=25%  Similarity=0.281  Sum_probs=104.0

Q ss_pred             EcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc------cccccceeee
Q 023563           55 PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD------TRYGLDSIVT  127 (280)
Q Consensus        55 ~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~------~~~~~~~v~~  127 (280)
                      ++|+++.|.++.+++++||+|++|++++|+||||||||||+ ++|.|+.. ....+.+-.....      .+..+.++++
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll-~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q   80 (157)
T cd00267           2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLL-RAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ   80 (157)
T ss_pred             eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence            67899999888999999999999999999999999999999 99999743 2333332221110      0112222322


Q ss_pred             ecccccccccccCchHHHHHHhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCC
Q 023563          128 HDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGS  201 (280)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~  201 (280)
                                +..=...+-..+++++.+|++++||||+..      ..+.+.+.++.+. +.|++++||+++++..    
T Consensus        81 ----------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~----  145 (157)
T cd00267          81 ----------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAEL----  145 (157)
T ss_pred             ----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----
Confidence                      111111222347899999999999999654      4578888888775 8999999999999986    


Q ss_pred             ccccccccceEEEeec
Q 023563          202 VIDIIPLADSVTKLTA  217 (280)
Q Consensus       202 ~~~ll~~aD~i~~L~~  217 (280)
                            +||+++.|++
T Consensus       146 ------~~d~i~~l~~  155 (157)
T cd00267         146 ------AADRVIVLKD  155 (157)
T ss_pred             ------hCCEEEEEeC
Confidence                  8999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3e-25  Score=212.45  Aligned_cols=164  Identities=17%  Similarity=0.176  Sum_probs=119.4

Q ss_pred             cEEEcCceEEeCCe--eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCcccccc
Q 023563           52 MVSPRPPLFSLQNR--NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNKDTRYG  121 (280)
Q Consensus        52 ~l~~~~ls~~y~~~--~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~~~~~~  121 (280)
                      .++++||+|+|.+.  ++|+|+||++++||.++|+|++|||||||+ .++.|.        ..+|.++..+++. ..+..
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTll-qLl~~~~~~~~G~i~~~g~~~~~l~~~-~~~e~  413 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL-QLLAGAWDPQQGSITLNGVEIASLDEQ-ALRET  413 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHH-HHHHhccCCCCCeeeECCcChhhCChh-hHHHH
Confidence            79999999999764  599999999999999999999999999999 999984        3344444333221 11122


Q ss_pred             cceeeee---------cccc-----------cccccccCchHHHHHH-------------------------hhhhccCC
Q 023563          122 LDSIVTH---------DGVK-----------LPCCALTTLSSFRQKF-------------------------GSDAYDQV  156 (280)
Q Consensus       122 ~~~v~~~---------~~~~-----------~~~~~~~~l~~~~~~~-------------------------a~aL~~~p  156 (280)
                      +..+.|+         ++..           ..++...++.++....                         ||+|.++.
T Consensus       414 i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da  493 (573)
T COG4987         414 ISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA  493 (573)
T ss_pred             HhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC
Confidence            2222221         1111           1112223333333211                         56899999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +++||||||..+      ++++.+.+.++  |+|+|||||++-.+.           .||+|++|++ +++..|++.+++
T Consensus       494 pl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le-----------~~drIivl~~Gkiie~G~~~~Ll  560 (573)
T COG4987         494 PLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLE-----------RMDRIIVLDNGKIIEEGTHAELL  560 (573)
T ss_pred             CeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHh-----------hcCEEEEEECCeeeecCCHHhhh
Confidence            999999997654      58888877765  899999999999887           6999999999 999999999988


Q ss_pred             e
Q 023563          230 L  230 (280)
Q Consensus       230 ~  230 (280)
                      .
T Consensus       561 ~  561 (573)
T COG4987         561 A  561 (573)
T ss_pred             c
Confidence            3

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.91  E-value=5e-25  Score=223.84  Aligned_cols=163  Identities=15%  Similarity=0.112  Sum_probs=114.7

Q ss_pred             cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEE
Q 023563           52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVA  110 (280)
Q Consensus        52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~  110 (280)
                      -|+++||+++|+ ++++|+|+||+|++|+.++|+||||||||||+ ++|.|+..        +|.            .++
T Consensus       473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLl-klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~  551 (708)
T TIGR01193       473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLA-KLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN  551 (708)
T ss_pred             cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHH-HHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence            599999999996 46899999999999999999999999999999 99999732        222            345


Q ss_pred             EecCCcccc-----cccceeeee---cccccccccccCchHH-----------------------HHHH--hhhhccCCC
Q 023563          111 VIKSNKDTR-----YGLDSIVTH---DGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVD  157 (280)
Q Consensus       111 ~~~~~~~~~-----~~~~~v~~~---~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~  157 (280)
                      +++|+...-     .++......   +.....+....++.++                       +++.  |||++.+|+
T Consensus       552 ~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~  631 (708)
T TIGR01193       552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSK  631 (708)
T ss_pred             EEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCC
Confidence            555543210     000000000   0000000111111111                       1111  789999999


Q ss_pred             EEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +|||||||+..|      +.+.|+++  + |+|+|++||+++.+.           .||+|++|++ +++..|+.+++.
T Consensus       632 iliLDE~Ts~LD~~te~~i~~~L~~~--~-~~T~IiitHr~~~~~-----------~~D~i~~l~~G~i~~~G~~~~L~  696 (708)
T TIGR01193       632 VLILDESTSNLDTITEKKIVNNLLNL--Q-DKTIIFVAHRLSVAK-----------QSDKIIVLDHGKIIEQGSHDELL  696 (708)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHh--c-CCEEEEEecchHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence            999999987653      66666653  2 899999999999875           7999999999 999999998886

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.91  E-value=2.1e-24  Score=216.93  Aligned_cols=166  Identities=17%  Similarity=0.218  Sum_probs=111.2

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee--------EEEecCCccccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN--------VAVIKSNKDTRYGL  122 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~--------i~~~~~~~~~~~~~  122 (280)
                      ||+++||+++|+++.+|+||||+|++|+++||+||||||||||+ ++|+|+.. ....        +++++|.... ...
T Consensus         3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLL-riiaG~~~p~~G~I~~~~~~~~~~l~q~~~~-~~~   80 (635)
T PRK11147          3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLM-KILNGEVLLDDGRIIYEQDLIVARLQQDPPR-NVE   80 (635)
T ss_pred             EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCeEEEeCCCCEEEEeccCCCC-CCC
Confidence            79999999999999999999999999999999999999999999 99999832 2222        3344432211 111


Q ss_pred             ceeeeec---------------------------cc----------------------ccccccccCch----------H
Q 023563          123 DSIVTHD---------------------------GV----------------------KLPCCALTTLS----------S  143 (280)
Q Consensus       123 ~~v~~~~---------------------------~~----------------------~~~~~~~~~l~----------~  143 (280)
                      ..+++..                           ..                      ....+...++.          .
T Consensus        81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgG  160 (635)
T PRK11147         81 GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGG  160 (635)
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHH
Confidence            1111100                           00                      00000000110          0


Q ss_pred             HHHH--HhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563          144 FRQK--FGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R  218 (280)
Q Consensus       144 ~~~~--~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~  218 (280)
                      ...+  +|++|+.+|++|||||||+.+|.  .+.|.++..+.+.|||+||||.+++.+          +||+|++|++ +
T Consensus       161 ekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~----------~~d~i~~L~~G~  230 (635)
T PRK11147        161 WLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRN----------MATRIVDLDRGK  230 (635)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH----------hcCeEEEEECCE
Confidence            0011  16789999999999999988752  333444443345799999999999987          9999999999 7


Q ss_pred             ec-cccCcceee
Q 023563          219 CE-FCGKRAFFT  229 (280)
Q Consensus       219 i~-~~g~~~~~~  229 (280)
                      ++ +.|+.+++.
T Consensus       231 i~~~~g~~~~~~  242 (635)
T PRK11147        231 LVSYPGNYDQYL  242 (635)
T ss_pred             EEEecCCHHHHH
Confidence            75 457765543

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.91  E-value=1.8e-24  Score=211.83  Aligned_cols=167  Identities=22%  Similarity=0.272  Sum_probs=117.8

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEEEecCCcccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVAVIKSNKDTRYG  121 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~~~~~~~~~~~~  121 (280)
                      .+|.++|++++|+++.+|+++||+|.+|+.+||||+||||||||| ++|+|...         .+..++++.|+......
T Consensus         2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLL-kilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~   80 (530)
T COG0488           2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLL-KILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPE   80 (530)
T ss_pred             ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHH-HHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCC
Confidence            379999999999999999999999999999999999999999999 99999632         34478888887654321


Q ss_pred             --c-ceeeeec-----------cccc------------------------------ccc----------cccCch---HH
Q 023563          122 --L-DSIVTHD-----------GVKL------------------------------PCC----------ALTTLS---SF  144 (280)
Q Consensus       122 --~-~~v~~~~-----------~~~~------------------------------~~~----------~~~~l~---~~  144 (280)
                        + ..++.-.           ....                              ..+          ....++   ..
T Consensus        81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~  160 (530)
T COG0488          81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRR  160 (530)
T ss_pred             ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence              1 0111000           0000                              000          000111   11


Q ss_pred             HHHHhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee-c
Q 023563          145 RQKFGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC-E  220 (280)
Q Consensus       145 ~~~~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i-~  220 (280)
                      +-..|++|+.+|++|||||||+.+|+  ++.|.+...+...|+|+||||-++..+          +|++|+.++. .+ .
T Consensus       161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~----------V~t~I~~ld~g~l~~  230 (530)
T COG0488         161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDN----------VATHILELDRGKLTP  230 (530)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHH----------HhhheEEecCCceeE
Confidence            11126789999999999999999874  566666654433399999999999997          9999999998 43 3


Q ss_pred             cccCccee
Q 023563          221 FCGKRAFF  228 (280)
Q Consensus       221 ~~g~~~~~  228 (280)
                      +.|.-+.+
T Consensus       231 y~Gny~~~  238 (530)
T COG0488         231 YKGNYSSY  238 (530)
T ss_pred             ecCCHHHH
Confidence            44544433

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.91  E-value=1.1e-24  Score=215.32  Aligned_cols=165  Identities=18%  Similarity=0.193  Sum_probs=114.5

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i  109 (280)
                      .++++|++++|++  +.+|+|+||+|++|+.++|+||||||||||+ +++.|+..        +|.            .+
T Consensus       316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i  394 (544)
T TIGR01842       316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLA-RLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI  394 (544)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence            5999999999953  5799999999999999999999999999999 99999732        222            24


Q ss_pred             EEecCCccccc-ccceee--eecc----cccccccccCchHH-----------------------HHHH--hhhhccCCC
Q 023563          110 AVIKSNKDTRY-GLDSIV--THDG----VKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVD  157 (280)
Q Consensus       110 ~~~~~~~~~~~-~~~~v~--~~~~----~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~  157 (280)
                      ++++|+...-. .+...+  ....    .....+...++.++                       ++|.  |||++.+|+
T Consensus       395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~  474 (544)
T TIGR01842       395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK  474 (544)
T ss_pred             EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence            44444432100 000000  0000    00000011111111                       1111  689999999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +||||||++..      .+.+.|+++..+ |+|+|++||+++.+.           .||+|++|++ +++..|+++++.
T Consensus       475 ililDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~ith~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~  541 (544)
T TIGR01842       475 LVVLDEPNSNLDEEGEQALANAIKALKAR-GITVVVITHRPSLLG-----------CVDKILVLQDGRIARFGERDEVL  541 (544)
T ss_pred             EEEEeCCccccCHHHHHHHHHHHHHHhhC-CCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEeeCCHHHHh
Confidence            99999998765      367777777643 899999999998764           7999999999 999999987765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.91  E-value=9.3e-25  Score=217.51  Aligned_cols=164  Identities=23%  Similarity=0.234  Sum_probs=114.6

Q ss_pred             cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------eeEE
Q 023563           52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RNVA  110 (280)
Q Consensus        52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~i~  110 (280)
                      .|+++|++++|++ +.+|+|+||++++|++++|+||||||||||+ ++|.|+..        +|            +.++
T Consensus       334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl-~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~  412 (588)
T PRK13657        334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA  412 (588)
T ss_pred             eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence            5999999999965 6799999999999999999999999999999 99999733        22            2345


Q ss_pred             EecCCccc-----ccccceeeee--cccccccccccCchHH-----------------------HHHH--hhhhccCCCE
Q 023563          111 VIKSNKDT-----RYGLDSIVTH--DGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVDV  158 (280)
Q Consensus       111 ~~~~~~~~-----~~~~~~v~~~--~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~l  158 (280)
                      +++|+...     +.++...-..  +.....++...++.++                       .+|.  ||+++.+|++
T Consensus       413 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i  492 (588)
T PRK13657        413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI  492 (588)
T ss_pred             EEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            55554321     0000000000  0000000111111111                       1111  7899999999


Q ss_pred             EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||++..|      +++.|.++.+  ++|+|++||+++.+.           .||+|++|++ +++..|+.+++.
T Consensus       493 liLDEpts~LD~~t~~~i~~~l~~~~~--~~tvIiitHr~~~~~-----------~~D~ii~l~~G~i~~~g~~~~l~  557 (588)
T PRK13657        493 LILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRLSTVR-----------NADRILVFDNGRVVESGSFDELV  557 (588)
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEEecHHHHH-----------hCCEEEEEECCEEEEeCCHHHHH
Confidence            99999987653      6666666543  899999999999875           7999999999 999899988775

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.91  E-value=6.2e-24  Score=192.25  Aligned_cols=153  Identities=18%  Similarity=0.142  Sum_probs=103.1

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeE------EEecCCcccc--cccceeeee----ccc
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNV------AVIKSNKDTR--YGLDSIVTH----DGV  131 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i------~~~~~~~~~~--~~~~~v~~~----~~~  131 (280)
                      +.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+      .+..+.....  ..+...+..    ...
T Consensus        37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl-k~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~  115 (264)
T PRK13546         37 FFALDDISLKAYEGDVIGLVGINGSGKSTLS-NIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGF  115 (264)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCC
Confidence            3599999999999999999999999999999 99999843 22222      2222221110  010000000    000


Q ss_pred             c--------cccccccCchHHHHH--------------HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCC
Q 023563          132 K--------LPCCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGK  183 (280)
Q Consensus       132 ~--------~~~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~  183 (280)
                      .        ...+...++..+.++              .+++++.+|++||||||++..      .+++.|.+++++ |.
T Consensus       116 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~-g~  194 (264)
T PRK13546        116 KRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ-NK  194 (264)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC-CC
Confidence            0        000111122221111              167899999999999997654      477888888654 99


Q ss_pred             EEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          184 TVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       184 tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||++||+++++.+          +||++++|++ +++..|+++++.
T Consensus       195 tiIiisH~~~~i~~----------~~d~i~~l~~G~i~~~g~~~~~~  231 (264)
T PRK13546        195 TIFFVSHNLGQVRQ----------FCTKIAWIEGGKLKDYGELDDVL  231 (264)
T ss_pred             EEEEEcCCHHHHHH----------HcCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999876          9999999999 888888887765

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.91  E-value=5.2e-24  Score=214.07  Aligned_cols=168  Identities=15%  Similarity=0.148  Sum_probs=113.6

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C------C--eeEEEecCCcc-cc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K------G--RNVAVIKSNKD-TR  119 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~------g--~~i~~~~~~~~-~~  119 (280)
                      .++|+++||+++|+++.+|+|+||+|.+|+++||+||||||||||+ ++|+|+.. .      |  ..++|++|+.. ..
T Consensus       317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~  395 (635)
T PRK11147        317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLL-KLMLGQLQADSGRIHCGTKLEVAYFDQHRAELD  395 (635)
T ss_pred             CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEECCCcEEEEEeCcccccC
Confidence            4589999999999998999999999999999999999999999999 99999732 1      2  24667766531 10


Q ss_pred             --cccceeeee--ccc--------ccccccccCch-HHHHHH--------------hhhhccCCCEEEEeCcccHHHH--
Q 023563          120 --YGLDSIVTH--DGV--------KLPCCALTTLS-SFRQKF--------------GSDAYDQVDVIGIDEAQFFEDL--  170 (280)
Q Consensus       120 --~~~~~v~~~--~~~--------~~~~~~~~~l~-~~~~~~--------------a~aL~~~p~lLlLDEP~~~~~i--  170 (280)
                        ..+...+..  ...        ....+...++. ....+.              |++++.+|++|||||||+.+|.  
T Consensus       396 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~  475 (635)
T PRK11147        396 PEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET  475 (635)
T ss_pred             CCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence              011100000  000        00001111221 111111              5789999999999999887652  


Q ss_pred             HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee-c-eec-cccCccee
Q 023563          171 YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT-A-RCE-FCGKRAFF  228 (280)
Q Consensus       171 ~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~-~-~i~-~~g~~~~~  228 (280)
                      .+.|.++.++.+.|||+||||.+++.+          +||++++|+ + ++. +.|+.++.
T Consensus       476 ~~~l~~~l~~~~~tvi~vSHd~~~~~~----------~~d~i~~l~~~g~i~~~~g~y~~y  526 (635)
T PRK11147        476 LELLEELLDSYQGTVLLVSHDRQFVDN----------TVTECWIFEGNGKIGRYVGGYHDA  526 (635)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHHHH----------hcCEEEEEeCCCeEEEccCCHHHH
Confidence            344444444446699999999999986          999999997 5 443 35655544

>PLN03211 ABC transporter G-25; Provisional

Probab=99.91  E-value=1.3e-24  Score=218.99  Aligned_cols=164  Identities=18%  Similarity=0.200  Sum_probs=114.4

Q ss_pred             EEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---Cee---------------EEEecCC
Q 023563           54 SPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---GRN---------------VAVIKSN  115 (280)
Q Consensus        54 ~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---g~~---------------i~~~~~~  115 (280)
                      .++|++++|+++.+|+|+|+++++||+++|+||||||||||+ ++|+|....   ...               +++++|+
T Consensus        70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL-~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~  148 (659)
T PLN03211         70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLL-NALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD  148 (659)
T ss_pred             ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHH-HHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence            467788999989999999999999999999999999999999 999997432   122               3344433


Q ss_pred             ccccc--ccceeee-----e-c-c--------cccccccccCchHHH-----------------HH--HhhhhccCCCEE
Q 023563          116 KDTRY--GLDSIVT-----H-D-G--------VKLPCCALTTLSSFR-----------------QK--FGSDAYDQVDVI  159 (280)
Q Consensus       116 ~~~~~--~~~~v~~-----~-~-~--------~~~~~~~~~~l~~~~-----------------~~--~a~aL~~~p~lL  159 (280)
                      .....  .+.+.+.     + . .        .....+...++.+..                 +|  .|++|+.+|++|
T Consensus       149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL  228 (659)
T PLN03211        149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL  228 (659)
T ss_pred             cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence            21100  0000000     0 0 0        000001111222211                 11  167899999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechh-HhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGD-YLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~-~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||++.+      .+++.|++++++ |+|||+++|+++ .+.+          +||++++|++ +++..|+++++.
T Consensus       229 lLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~----------~~D~iilL~~G~iv~~G~~~~~~  295 (659)
T PLN03211        229 ILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQ----------MFDSVLVLSEGRCLFFGKGSDAM  295 (659)
T ss_pred             EEeCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHH----------hhceEEEecCCcEEEECCHHHHH
Confidence            999997655      488899998875 999999999998 4654          8999999999 999999988774

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.91  E-value=9.8e-25  Score=221.86  Aligned_cols=166  Identities=20%  Similarity=0.215  Sum_probs=114.2

Q ss_pred             cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------e
Q 023563           52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------N  108 (280)
Q Consensus        52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~  108 (280)
                      .|+++||+++|++   +.+|+|+||+|++||.++|+||||||||||+ ++|.|+..        +|.            .
T Consensus       478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl-~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  556 (711)
T TIGR00958       478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVA-ALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ  556 (711)
T ss_pred             eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence            5999999999964   5699999999999999999999999999999 99999732        222            3


Q ss_pred             EEEecCCccc-----ccccceeee--ecccccccccccCchHH-----------------------HHHH--hhhhccCC
Q 023563          109 VAVIKSNKDT-----RYGLDSIVT--HDGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQV  156 (280)
Q Consensus       109 i~~~~~~~~~-----~~~~~~v~~--~~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p  156 (280)
                      +++++|++..     +.++.+-..  .+.....++...++.++                       ++|.  |||++.+|
T Consensus       557 i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p  636 (711)
T TIGR00958       557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP  636 (711)
T ss_pred             ceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            4555554321     111100000  00000000111111111                       1111  78999999


Q ss_pred             CEEEEeCcccHHH--HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFED--LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~~--i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++|||||||+..|  ..+.+.+.....++|+|++||+++.+.           .||+|++|++ ++++.|+++++.
T Consensus       637 ~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-----------~aD~IivL~~G~ive~Gt~~eL~  701 (711)
T TIGR00958       637 RVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-----------RADQILVLKKGSVVEMGTHKQLM  701 (711)
T ss_pred             CEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-----------hCCEEEEEECCEEEEeeCHHHHH
Confidence            9999999988765  223333322224899999999999876           6999999999 999999999887

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.91  E-value=4.4e-24  Score=211.43  Aligned_cols=163  Identities=20%  Similarity=0.225  Sum_probs=111.4

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-----C--eeEEEecCCcc-cc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-----G--RNVAVIKSNKD-TR  119 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-----g--~~i~~~~~~~~-~~  119 (280)
                      .++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..  .     +  ..++|++|... ..
T Consensus       320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~  398 (552)
T TIGR03719       320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLF-RMITGQEQPDSGTIKIGETVKLAYVDQSRDALD  398 (552)
T ss_pred             CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCeEEEECCceEEEEEeCCccccC
Confidence            4689999999999988999999999999999999999999999999 99999732  1     1  14677777632 11


Q ss_pred             --cccceeeee----------cccccccccccCchH-HHHH--------------HhhhhccCCCEEEEeCcccHHH---
Q 023563          120 --YGLDSIVTH----------DGVKLPCCALTTLSS-FRQK--------------FGSDAYDQVDVIGIDEAQFFED---  169 (280)
Q Consensus       120 --~~~~~v~~~----------~~~~~~~~~~~~l~~-~~~~--------------~a~aL~~~p~lLlLDEP~~~~~---  169 (280)
                        ..+...+..          .......+...++.. ..++              +|++|+.+|++||||||++.+|   
T Consensus       399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~  478 (552)
T TIGR03719       399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET  478 (552)
T ss_pred             CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence              111100000          000001112223321 1111              1678999999999999987654   


Q ss_pred             ---HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec--eec-cccCcce
Q 023563          170 ---LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA--RCE-FCGKRAF  227 (280)
Q Consensus       170 ---i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~--~i~-~~g~~~~  227 (280)
                         ++++|.++    +.|||++|||++++.+          +||++++|++  ++. +.|+.++
T Consensus       479 ~~~l~~~l~~~----~~~viivsHd~~~~~~----------~~d~i~~l~~~~~~~~~~g~~~~  528 (552)
T TIGR03719       479 LRALEEALLEF----AGCAVVISHDRWFLDR----------IATHILAFEGDSHVEWFEGNYSE  528 (552)
T ss_pred             HHHHHHHHHHC----CCeEEEEeCCHHHHHH----------hCCEEEEEECCCeEEEeCCCHHH
Confidence               45555444    3489999999999987          9999999974  333 4454433

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.91  E-value=1.7e-24  Score=214.50  Aligned_cols=164  Identities=18%  Similarity=0.130  Sum_probs=115.1

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i  109 (280)
                      -|+++||+++|++  +.+|+|+||+|++|+.++|+|+||||||||+ ++|.|+..        +|.            .+
T Consensus       330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl-~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i  408 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLV-NLIPRFYEPDSGQILLDGHDLADYTLASLRRQV  408 (571)
T ss_pred             eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCeEEECCEeHHhcCHHHHHhhc
Confidence            4999999999964  5799999999999999999999999999999 99999732        222            24


Q ss_pred             EEecCCccc-----ccccceee--e-ecccccccccccCchHHH-----------------------HHH--hhhhccCC
Q 023563          110 AVIKSNKDT-----RYGLDSIV--T-HDGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQV  156 (280)
Q Consensus       110 ~~~~~~~~~-----~~~~~~v~--~-~~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p  156 (280)
                      +|++|++..     +.++...-  . .+......+...++.++.                       +|.  ||+++.+|
T Consensus       409 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~  488 (571)
T TIGR02203       409 ALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDA  488 (571)
T ss_pred             eEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            455554321     11110000  0 000000011111222111                       111  68999999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++|||||||+..      .+++.|.++.+  ++|+|++||+.+...           .||+|++|++ +++..|+.+++.
T Consensus       489 ~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~~~~-----------~~D~ii~l~~g~i~~~g~~~~l~  555 (571)
T TIGR02203       489 PILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIE-----------KADRIVVMDDGRIVERGTHNELL  555 (571)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhhHHHH-----------hCCEEEEEeCCEEEeeCCHHHHH
Confidence            999999997765      36777777643  799999999998875           7999999999 999889888875

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.91  E-value=2.2e-24  Score=193.32  Aligned_cols=141  Identities=17%  Similarity=0.149  Sum_probs=97.8

Q ss_pred             eeeEeeeeEee-----CceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCccccc--ccceeee---
Q 023563           66 NLHSEASVSSP-----SGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTRY--GLDSIVT---  127 (280)
Q Consensus        66 ~vl~~isl~i~-----~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~~--~~~~v~~---  127 (280)
                      ..+++++|++.     +||+++|+||||||||||+ ++|+|+.        +.|..+++++|......  .+...+.   
T Consensus         8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLl-k~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~   86 (246)
T cd03237           8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFI-KMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSIT   86 (246)
T ss_pred             cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHh
Confidence            35566666665     7999999999999999999 9999973        24557788877643211  1111110   


Q ss_pred             e-c----ccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcC
Q 023563          128 H-D----GVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDG  182 (280)
Q Consensus       128 ~-~----~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g  182 (280)
                      . .    ......+...++....++.              |++|+.+|+++|||||++.+      .+.++|++++++.|
T Consensus        87 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  166 (246)
T cd03237          87 KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE  166 (246)
T ss_pred             hhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            0 0    0001112222333322221              67899999999999997654      47888888877668


Q ss_pred             CEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          183 KTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       183 ~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +|||++|||++++..          +||++++|++
T Consensus       167 ~tiiivsHd~~~~~~----------~~d~i~~l~~  191 (246)
T cd03237         167 KTAFVVEHDIIMIDY----------LADRLIVFEG  191 (246)
T ss_pred             CEEEEEeCCHHHHHH----------hCCEEEEEcC
Confidence            999999999999986          9999999987

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.91  E-value=1.3e-24  Score=216.13  Aligned_cols=165  Identities=15%  Similarity=0.140  Sum_probs=116.3

Q ss_pred             ccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCee------------
Q 023563           51 SMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRN------------  108 (280)
Q Consensus        51 ~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~------------  108 (280)
                      +.|+++||+++|++  +.+|+|+||+|++|++++|+||||||||||+ ++|.|+..        +|.+            
T Consensus       337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~-~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~  415 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL-QLLTRAWDPQQGEILLNGQPIADYSEAALRQA  415 (574)
T ss_pred             CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence            35999999999964  5699999999999999999999999999999 99999732        2222            


Q ss_pred             EEEecCCcccc-----cccceee-e-ecccccccccccCchHHHH----------------------HH--hhhhccCCC
Q 023563          109 VAVIKSNKDTR-----YGLDSIV-T-HDGVKLPCCALTTLSSFRQ----------------------KF--GSDAYDQVD  157 (280)
Q Consensus       109 i~~~~~~~~~~-----~~~~~v~-~-~~~~~~~~~~~~~l~~~~~----------------------~~--a~aL~~~p~  157 (280)
                      +++++|+...-     .++...- . .+.....++...++.++.+                      |.  ||+++.+|+
T Consensus       416 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~  495 (574)
T PRK11160        416 ISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP  495 (574)
T ss_pred             eeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            34444443210     0000000 0 0000001111222222221                      11  789999999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +|||||||+..      .+.+.|.++.+  ++|+|++||+++.+.           .||+|++|++ +++..|+.+++.
T Consensus       496 ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tviiitHr~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~  561 (574)
T PRK11160        496 LLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLTGLE-----------QFDRICVMDNGQIIEQGTHQELL  561 (574)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecChhHHH-----------hCCEEEEEeCCeEEEeCCHHHHH
Confidence            99999997764      36777777653  899999999999886           6999999999 999999998876

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.91  E-value=1.2e-24  Score=215.79  Aligned_cols=163  Identities=20%  Similarity=0.217  Sum_probs=117.2

Q ss_pred             cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCccccccc
Q 023563           52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGL  122 (280)
Q Consensus        52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~  122 (280)
                      -|+++||+++|+ ++++|+|+||++++||.+||+|||||||||++ ++|.++..        +|.++..+... ..|..+
T Consensus       328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~-~LL~r~~~~~~G~I~idg~dI~~i~~~-~lr~~I  405 (567)
T COG1132         328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLI-KLLLRLYDPTSGEILIDGIDIRDISLD-SLRKRI  405 (567)
T ss_pred             eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCeEEECCEehhhcCHH-HHHHhc
Confidence            399999999998 68999999999999999999999999999999 99999743        23332211111 113333


Q ss_pred             ceeeeecccc--------------------cccccccC----------------------chH-HHHHH--hhhhccCCC
Q 023563          123 DSIVTHDGVK--------------------LPCCALTT----------------------LSS-FRQKF--GSDAYDQVD  157 (280)
Q Consensus       123 ~~v~~~~~~~--------------------~~~~~~~~----------------------l~~-~~~~~--a~aL~~~p~  157 (280)
                      +.+.|...+.                    ..+....+                      ++. .+++.  |||++.+|+
T Consensus       406 ~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~  485 (567)
T COG1132         406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP  485 (567)
T ss_pred             cEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence            3333211000                    00000111                      111 11111  789999999


Q ss_pred             EEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +|+|||||+..|      +.+.+.++.+  ++|+++++|.++.+.           .||+|++|++ ++++.|+++++.
T Consensus       486 ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRlsti~-----------~aD~IiVl~~G~i~e~G~h~eLl  551 (567)
T COG1132         486 ILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLSTIK-----------NADRIIVLDNGRIVERGTHEELL  551 (567)
T ss_pred             EEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccHhHHH-----------hCCEEEEEECCEEEEecCHHHHH
Confidence            999999988754      6677776663  789999999999887           5999999999 999999999998

>PLN03073 ABC transporter F family; Provisional

Probab=99.91  E-value=3.7e-24  Score=217.11  Aligned_cols=166  Identities=17%  Similarity=0.183  Sum_probs=112.2

Q ss_pred             CccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-------CeeEEEecCCcccc
Q 023563           50 HSMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-------GRNVAVIKSNKDTR  119 (280)
Q Consensus        50 ~~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-------g~~i~~~~~~~~~~  119 (280)
                      .++|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..  .       ...++|++|+....
T Consensus       506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLL-k~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~  584 (718)
T PLN03073        506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLISGELQPSSGTVFRSAKVRMAVFSQHHVDG  584 (718)
T ss_pred             CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCceEEECCceeEEEEecccccc
Confidence            35899999999996 45799999999999999999999999999999 99999732  1       13466777653111


Q ss_pred             cccce--e--ee--ecc----cccccccccCch-HHHHH--------------HhhhhccCCCEEEEeCcccHHHH---H
Q 023563          120 YGLDS--I--VT--HDG----VKLPCCALTTLS-SFRQK--------------FGSDAYDQVDVIGIDEAQFFEDL---Y  171 (280)
Q Consensus       120 ~~~~~--v--~~--~~~----~~~~~~~~~~l~-~~~~~--------------~a~aL~~~p~lLlLDEP~~~~~i---~  171 (280)
                      ..+..  .  +.  ...    .....+...++. ....+              +|++++.+|++|||||||+.+|.   .
T Consensus       585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~  664 (718)
T PLN03073        585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE  664 (718)
T ss_pred             CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence            11100  0  00  000    000111122222 11111              16789999999999999887652   2


Q ss_pred             HHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec-cccCcce
Q 023563          172 DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE-FCGKRAF  227 (280)
Q Consensus       172 ~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~-~~g~~~~  227 (280)
                      .++..+.+. +.|||++|||++++.+          +||++++|++ +++ +.|++++
T Consensus       665 ~l~~~L~~~-~gtvIivSHd~~~i~~----------~~drv~~l~~G~i~~~~g~~~~  711 (718)
T PLN03073        665 ALIQGLVLF-QGGVLMVSHDEHLISG----------SVDELWVVSEGKVTPFHGTFHD  711 (718)
T ss_pred             HHHHHHHHc-CCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEeCCCHHH
Confidence            233334332 4599999999999987          9999999998 776 5666554

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.91  E-value=5.8e-24  Score=210.72  Aligned_cols=164  Identities=21%  Similarity=0.215  Sum_probs=111.6

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C------C--eeEEEecCCc-ccc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K------G--RNVAVIKSNK-DTR  119 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~------g--~~i~~~~~~~-~~~  119 (280)
                      .++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. .      +  ..++|++|.. ...
T Consensus       322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~  400 (556)
T PRK11819        322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLF-KMITGQEQPDSGTIKIGETVKLAYVDQSRDALD  400 (556)
T ss_pred             CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCceEEEEEeCchhhcC
Confidence            4589999999999988999999999999999999999999999999 99999732 1      1  1467777753 111


Q ss_pred             c--ccceeee----ecc------cccccccccCchH-HHHH--------------HhhhhccCCCEEEEeCcccHHH---
Q 023563          120 Y--GLDSIVT----HDG------VKLPCCALTTLSS-FRQK--------------FGSDAYDQVDVIGIDEAQFFED---  169 (280)
Q Consensus       120 ~--~~~~v~~----~~~------~~~~~~~~~~l~~-~~~~--------------~a~aL~~~p~lLlLDEP~~~~~---  169 (280)
                      .  .+...+.    ...      .....+...++.. ..++              .+++++.+|++||||||++.+|   
T Consensus       401 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~  480 (556)
T PRK11819        401 PNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVET  480 (556)
T ss_pred             CCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence            1  1110000    000      0001112223321 1111              1678999999999999987654   


Q ss_pred             ---HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec--eec-cccCccee
Q 023563          170 ---LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA--RCE-FCGKRAFF  228 (280)
Q Consensus       170 ---i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~--~i~-~~g~~~~~  228 (280)
                         ++++|.++    +.|||++|||++++.+          +||++++|++  ++. +.|+.+++
T Consensus       481 ~~~l~~~l~~~----~~tvi~vtHd~~~~~~----------~~d~i~~l~~~g~~~~~~g~~~~~  531 (556)
T PRK11819        481 LRALEEALLEF----PGCAVVISHDRWFLDR----------IATHILAFEGDSQVEWFEGNFQEY  531 (556)
T ss_pred             HHHHHHHHHhC----CCeEEEEECCHHHHHH----------hCCEEEEEECCCeEEEecCCHHHH
Confidence               44555443    3489999999999987          9999999974  333 45555544

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1e-23  Score=177.16  Aligned_cols=169  Identities=19%  Similarity=0.167  Sum_probs=121.7

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCccc----------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNKDT----------  118 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~~~----------  118 (280)
                      .|++++.+++|.|+.....+||||++.+||+.||+|.+|||||||+ ++|.+- ......+.|.......          
T Consensus         4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL-~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae   82 (258)
T COG4107           4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLL-KCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE   82 (258)
T ss_pred             CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHH-HHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence            4689999999999999999999999999999999999999999999 999873 3333334333211110          


Q ss_pred             -----ccccceeeee--ccccc----------------------------cccc-----ccCch--------HHH--HHH
Q 023563          119 -----RYGLDSIVTH--DGVKL----------------------------PCCA-----LTTLS--------SFR--QKF  148 (280)
Q Consensus       119 -----~~~~~~v~~~--~~~~~----------------------------~~~~-----~~~l~--------~~~--~~~  148 (280)
                           |...+.+-|+  +++..                            .++.     ...++        .+.  -++
T Consensus        83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi  162 (258)
T COG4107          83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI  162 (258)
T ss_pred             HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence                 0001111111  00000                            0000     00111        111  122


Q ss_pred             hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      |+.|+..|+++++||||-.+      .++++++.+..+.|.+++++|||+..+.-          ++||..+|+. +++.
T Consensus       163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarL----------la~rlmvmk~g~vve  232 (258)
T COG4107         163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARL----------LADRLMVMKQGQVVE  232 (258)
T ss_pred             HHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHH----------hhhcceeecCCCEec
Confidence            67899999999999996544      58899999999999999999999999985          8999999999 9999


Q ss_pred             ccCcceee
Q 023563          222 CGKRAFFT  229 (280)
Q Consensus       222 ~g~~~~~~  229 (280)
                      .|-++.++
T Consensus       233 ~GLTDrvL  240 (258)
T COG4107         233 SGLTDRVL  240 (258)
T ss_pred             cccccccc
Confidence            99888777

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.2e-24  Score=204.77  Aligned_cols=164  Identities=20%  Similarity=0.240  Sum_probs=115.8

Q ss_pred             cEEEcCceEEeCCee-eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-------CCeeEEEecCCcccccccc
Q 023563           52 MVSPRPPLFSLQNRN-LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-------KGRNVAVIKSNKDTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~-vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-------~g~~i~~~~~~~~~~~~~~  123 (280)
                      .|+++||++.|+.+. +|+++||+|++||.+||+|+|||||||++ ++|.++..       +|.++.-+.. ...|..++
T Consensus       351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTil-r~LlrF~d~sG~I~IdG~dik~~~~-~SlR~~Ig  428 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTIL-RLLLRFFDYSGSILIDGQDIKEVSL-ESLRQSIG  428 (591)
T ss_pred             cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHH-HHHHHHhccCCcEEECCeeHhhhCh-HHhhhhee
Confidence            499999999998765 99999999999999999999999999999 98887632       3333211110 01122233


Q ss_pred             eeeeeccccc--------------------ccccccCchHH-------------------------HHHHhhhhccCCCE
Q 023563          124 SIVTHDGVKL--------------------PCCALTTLSSF-------------------------RQKFGSDAYDQVDV  158 (280)
Q Consensus       124 ~v~~~~~~~~--------------------~~~~~~~l~~~-------------------------~~~~a~aL~~~p~l  158 (280)
                      .++|...+..                    +.....++.+.                         +-..+||++.+|++
T Consensus       429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I  508 (591)
T KOG0057|consen  429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI  508 (591)
T ss_pred             EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence            3332111000                    00001111111                         11126799999999


Q ss_pred             EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      +++||||+.+|      +++.+.+..  .|+|+|++-|+++.+.           -||+|++|++ ++...|+.++++.
T Consensus       509 l~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~ll~-----------~~DkI~~l~nG~v~e~gth~ell~  574 (591)
T KOG0057|consen  509 LLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRLDLLK-----------DFDKIIVLDNGTVKEYGTHSELLA  574 (591)
T ss_pred             EEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecchhHh-----------cCCEEEEEECCeeEEeccHHHHhh
Confidence            99999988764      667666633  3999999999999987           6999999999 9999999999883

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.91  E-value=1.7e-24  Score=219.46  Aligned_cols=163  Identities=19%  Similarity=0.218  Sum_probs=114.9

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccc
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYG  121 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~  121 (280)
                      .|+++||+++|++  +.+|+|+||+|++|+.++|+||||||||||+ ++|.|+..        +|.++..+... ..+..
T Consensus       455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~-~ll~g~~~p~~G~I~idg~~i~~~~~~-~~r~~  532 (694)
T TIGR01846       455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLT-KLLQRLYTPQHGQVLVDGVDLAIADPA-WLRRQ  532 (694)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEehhhCCHH-HHHHh
Confidence            5999999999953  5699999999999999999999999999999 99999732        23222111100 11222


Q ss_pred             cceeeeeccc---------c-----------cccccccCchHHH-----------------------HHH--hhhhccCC
Q 023563          122 LDSIVTHDGV---------K-----------LPCCALTTLSSFR-----------------------QKF--GSDAYDQV  156 (280)
Q Consensus       122 ~~~v~~~~~~---------~-----------~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p  156 (280)
                      ++++.|+...         .           ..++...++.++.                       ++.  |||++.+|
T Consensus       533 i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~  612 (694)
T TIGR01846       533 MGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP  612 (694)
T ss_pred             CeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            3333321110         0           0001111111111                       111  68999999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++|||||||+..      .+.+.|+++.+  ++|+|++||+++.+.           .||+|++|++ ++++.|+.+++.
T Consensus       613 ~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-----------~~d~ii~l~~G~i~~~g~~~~l~  679 (694)
T TIGR01846       613 RILIFDEATSALDYESEALIMRNMREICR--GRTVIIIAHRLSTVR-----------ACDRIIVLEKGQIAESGRHEELL  679 (694)
T ss_pred             CEEEEECCCcCCCHHHHHHHHHHHHHHhC--CCEEEEEeCChHHHH-----------hCCEEEEEeCCEEEEeCCHHHHH
Confidence            999999997754      47777777742  899999999999886           6999999999 999999998876

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.7e-24  Score=210.97  Aligned_cols=166  Identities=17%  Similarity=0.200  Sum_probs=117.2

Q ss_pred             CccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCee----------
Q 023563           50 HSMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRN----------  108 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~----------  108 (280)
                      .-.|+++||+|.|..   .++|+|+||+|++||+++|+||||+||||++ .+|..+.        .+|.+          
T Consensus       463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTia-sLL~rfY~PtsG~IllDG~~i~~~~~~~lr  541 (716)
T KOG0058|consen  463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIA-SLLLRFYDPTSGRILLDGVPISDINHKYLR  541 (716)
T ss_pred             cceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHH-HHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence            346999999999965   4699999999999999999999999999999 8888762        23333          


Q ss_pred             --EEEecCCccc-----ccccceeee---ecccccccccccC----------------------ch-HHHHH--Hhhhhc
Q 023563          109 --VAVIKSNKDT-----RYGLDSIVT---HDGVKLPCCALTT----------------------LS-SFRQK--FGSDAY  153 (280)
Q Consensus       109 --i~~~~~~~~~-----~~~~~~v~~---~~~~~~~~~~~~~----------------------l~-~~~~~--~a~aL~  153 (280)
                        |+++.|++-.     +.++.+-..   .+.. ..+....|                      ++ ...+|  .||||+
T Consensus       542 ~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i-~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl  620 (716)
T KOG0058|consen  542 RKIGLVGQEPVLFSGSIRENIAYGLDNATDEEI-EAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL  620 (716)
T ss_pred             HHeeeeeccceeecccHHHHHhcCCCCCCHHHH-HHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence              3344443321     000000000   0000 00000001                      11 11112  278999


Q ss_pred             cCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|.+|||||.|+++|      +.+.|.++.+  ++|||++.|.+..++           .||+|+++++ +++..|+.+
T Consensus       621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~-----------~Ad~Ivvi~~G~V~E~G~h~  687 (716)
T KOG0058|consen  621 RNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVR-----------HADQIVVIDKGRVVEMGTHD  687 (716)
T ss_pred             cCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhh-----------hccEEEEEcCCeEEecccHH
Confidence            9999999999999876      5666666665  799999999999997           6999999999 999999999


Q ss_pred             eeee
Q 023563          227 FFTL  230 (280)
Q Consensus       227 ~~~~  230 (280)
                      |++.
T Consensus       688 eLl~  691 (716)
T KOG0058|consen  688 ELLS  691 (716)
T ss_pred             HHhh
Confidence            9883

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3e-24  Score=207.71  Aligned_cols=163  Identities=19%  Similarity=0.207  Sum_probs=116.2

Q ss_pred             EEEcCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------eeEEE
Q 023563           53 VSPRPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RNVAV  111 (280)
Q Consensus        53 l~~~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~i~~  111 (280)
                      ++.+|++++|++. ++++|+||++++|+.++|+|+||||||||+ .+|.|+..        +|            +++.+
T Consensus       321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl-~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~  399 (559)
T COG4988         321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLL-NLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW  399 (559)
T ss_pred             eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHH-HHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence            5566999999654 899999999999999999999999999999 99999733        22            23444


Q ss_pred             ecCCcccccc-ccee--eeecc----cccccccccCchHH----------------------HHHH--hhhhccCCCEEE
Q 023563          112 IKSNKDTRYG-LDSI--VTHDG----VKLPCCALTTLSSF----------------------RQKF--GSDAYDQVDVIG  160 (280)
Q Consensus       112 ~~~~~~~~~~-~~~v--~~~~~----~~~~~~~~~~l~~~----------------------~~~~--a~aL~~~p~lLl  160 (280)
                      ++|++..-.+ +...  +.+..    ....++...++.++                      +.|.  |||++.+++++|
T Consensus       400 v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l  479 (559)
T COG4988         400 VSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL  479 (559)
T ss_pred             eCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence            4444321100 0000  00000    00001111111111                      1222  689999999999


Q ss_pred             EeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          161 IDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       161 LDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +||||+..|      +.+.|.++++  ++|++++||++..+.           -||+|++|++ ++++.|+++++.
T Consensus       480 lDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~-----------~~D~I~vld~G~l~~~g~~~~L~  542 (559)
T COG4988         480 LDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAA-----------DADRIVVLDNGRLVEQGTHEELS  542 (559)
T ss_pred             ecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHh-----------cCCEEEEecCCceeccCCHHHHh
Confidence            999987654      7788888876  699999999999997           5999999999 999999999986

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.90  E-value=1.4e-23  Score=191.61  Aligned_cols=165  Identities=17%  Similarity=0.170  Sum_probs=113.0

Q ss_pred             CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CC-----eeEEEecCCccccc-
Q 023563           49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KG-----RNVAVIKSNKDTRY-  120 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g-----~~i~~~~~~~~~~~-  120 (280)
                      ..+.|+++|+++.  ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..  .|     ..++|++|...... 
T Consensus        36 ~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl-~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~  112 (282)
T cd03291          36 DDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLL-MLILGELEPSEGKIKHSGRISFSSQFSWIMPG  112 (282)
T ss_pred             CCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEEEEeCccccccc
Confidence            3457999999986  46799999999999999999999999999999 99999743  12     24677777643210 


Q ss_pred             ccceeee---ecc--cccccccccC----------------------ch-HHHHH--HhhhhccCCCEEEEeCcccHHH-
Q 023563          121 GLDSIVT---HDG--VKLPCCALTT----------------------LS-SFRQK--FGSDAYDQVDVIGIDEAQFFED-  169 (280)
Q Consensus       121 ~~~~v~~---~~~--~~~~~~~~~~----------------------l~-~~~~~--~a~aL~~~p~lLlLDEP~~~~~-  169 (280)
                      .+...+.   ...  .....+...+                      ++ ....+  .|++|+.+|++||||||+...| 
T Consensus       113 tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~  192 (282)
T cd03291         113 TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV  192 (282)
T ss_pred             CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence            1100000   000  0000000011                      11 11111  1678999999999999976553 


Q ss_pred             -----HHHHH-HHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          170 -----LYDFC-REAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       170 -----i~~~l-~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                           +++.+ .++. + +.|||++||+++++.           .||++++|++ +++..|+++++.
T Consensus       193 ~~~~~l~~~ll~~~~-~-~~tIiiisH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~~~  246 (282)
T cd03291         193 FTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-----------KADKILILHEGSSYFYGTFSELQ  246 (282)
T ss_pred             HHHHHHHHHHHHHhh-C-CCEEEEEeCChHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence                 44433 3443 3 899999999999874           7999999999 999999988876

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.90  E-value=7.2e-24  Score=180.96  Aligned_cols=137  Identities=23%  Similarity=0.192  Sum_probs=89.2

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcc-cccccceeeeecccc-cc--c--c--
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKD-TRYGLDSIVTHDGVK-LP--C--C--  136 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~-~~~~~~~v~~~~~~~-~~--~--~--  136 (280)
                      +++|+|+||+|++|++++|+||||||||||+ +++.+  ..| .+.+...... .+..+.++.+..... ..  .  +  
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl-~~il~--~~G-~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~   83 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLV-NEGLY--ASG-KARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQ   83 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhh--cCC-cEEECCcccccccccEEEEhHHHHHHHcCCCccccCC
Confidence            5789999999999999999999999999999 88753  112 2221111000 011122222200000 00  0  0  


Q ss_pred             cccCchH-HHH--HHhhhhccC--CCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCcccc
Q 023563          137 ALTTLSS-FRQ--KFGSDAYDQ--VDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDI  205 (280)
Q Consensus       137 ~~~~l~~-~~~--~~a~aL~~~--p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~l  205 (280)
                      ....++. ...  ..+++++.+  |++||||||+..      ..+.+.|+++++ .|+|||++||+++++.         
T Consensus        84 ~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~~---------  153 (176)
T cd03238          84 KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDVLS---------  153 (176)
T ss_pred             CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH---------
Confidence            0011111 112  227889999  999999999654      457788888876 4999999999999874         


Q ss_pred             ccccceEEEeec
Q 023563          206 IPLADSVTKLTA  217 (280)
Q Consensus       206 l~~aD~i~~L~~  217 (280)
                        .||++++|.+
T Consensus       154 --~~d~i~~l~~  163 (176)
T cd03238         154 --SADWIIDFGP  163 (176)
T ss_pred             --hCCEEEEECC
Confidence              7999999977

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.90  E-value=1.8e-23  Score=210.61  Aligned_cols=166  Identities=16%  Similarity=0.086  Sum_probs=116.9

Q ss_pred             ccEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc--------
Q 023563           51 SMVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD--------  117 (280)
Q Consensus        51 ~~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~--------  117 (280)
                      ++|+++|++++|++    +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..+..        
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~   81 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLM-NILGCLDKPTSGTYRVAGQDVATLDADALA   81 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence            48999999999953    4799999999999999999999999999999 99999832 2222222111100        


Q ss_pred             --cccccceeeeecccccc---------------------------cccccCchHHHHHH--------------hhhhcc
Q 023563          118 --TRYGLDSIVTHDGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAYD  154 (280)
Q Consensus       118 --~~~~~~~v~~~~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~  154 (280)
                        .+..++++++.......                           .+...++.+..++.              +++|+.
T Consensus        82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~  161 (648)
T PRK10535         82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN  161 (648)
T ss_pred             HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence              01223333332211100                           00111121111111              578999


Q ss_pred             CCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcce
Q 023563          155 QVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAF  227 (280)
Q Consensus       155 ~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~  227 (280)
                      +|++||||||+..      ..+.+++++++++ |.|+|++||+++.+.           .||++++|++ +++..|++++
T Consensus       162 ~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~-g~tilivsH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~  229 (648)
T PRK10535        162 GGQVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQVAA-----------QAERVIEIRDGEIVRNPPAQE  229 (648)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHH-----------hCCEEEEEECCEEEeecCccc
Confidence            9999999999654      4588888888765 999999999999874           7999999999 9999999987


Q ss_pred             ee
Q 023563          228 FT  229 (280)
Q Consensus       228 ~~  229 (280)
                      ..
T Consensus       230 ~~  231 (648)
T PRK10535        230 KV  231 (648)
T ss_pred             cc
Confidence            64

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.90  E-value=2.8e-24  Score=214.13  Aligned_cols=164  Identities=20%  Similarity=0.172  Sum_probs=113.7

Q ss_pred             cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEE
Q 023563           52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVA  110 (280)
Q Consensus        52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~  110 (280)
                      .|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|.|+..        +|.            .++
T Consensus       334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  412 (585)
T TIGR01192       334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLI-NLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA  412 (585)
T ss_pred             eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHH-HHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence            5999999999975 5799999999999999999999999999999 99999732        222            234


Q ss_pred             EecCCcccccc-cceee--eecc----cccccccccCchH-----------------------HHHHH--hhhhccCCCE
Q 023563          111 VIKSNKDTRYG-LDSIV--THDG----VKLPCCALTTLSS-----------------------FRQKF--GSDAYDQVDV  158 (280)
Q Consensus       111 ~~~~~~~~~~~-~~~v~--~~~~----~~~~~~~~~~l~~-----------------------~~~~~--a~aL~~~p~l  158 (280)
                      +++|+...-.. +...+  ....    ....+....++.+                       ..++.  ||+|+.+|++
T Consensus       413 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i  492 (585)
T TIGR01192       413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI  492 (585)
T ss_pred             EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            44444321000 00000  0000    0000000001111                       11111  7899999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||++..      .+.+.|.++. + ++|+|++||+++.+.           .||+|++|++ +++..|+.+++.
T Consensus       493 lilDEpts~LD~~~~~~i~~~l~~~~-~-~~tvI~isH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~  557 (585)
T TIGR01192       493 LVLDEATSALDVETEARVKNAIDALR-K-NRTTFIIAHRLSTVR-----------NADLVLFLDQGRLIEKGSFQELI  557 (585)
T ss_pred             EEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEEcChHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence            9999998654      4677777664 3 899999999999885           6999999999 999999988876

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=2.2e-24  Score=222.80  Aligned_cols=164  Identities=20%  Similarity=0.242  Sum_probs=120.1

Q ss_pred             ccEEEcCceEEeCCe---eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCcccc
Q 023563           51 SMVSPRPPLFSLQNR---NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTR  119 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~---~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~  119 (280)
                      -.|+++||+|+|..+   .+|+|+||+|++|+.++|+|||||||||++ .+|.++.        ++|.++..+.. ...|
T Consensus       349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i-~LL~RfydP~~G~V~idG~di~~~~~-~~lr  426 (1228)
T KOG0055|consen  349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLI-QLLARFYDPTSGEVLIDGEDIRNLNL-KWLR  426 (1228)
T ss_pred             cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHH-HHHHHhcCCCCceEEEcCccchhcch-HHHH
Confidence            369999999999765   599999999999999999999999999999 9999973        24444432221 1223


Q ss_pred             cccceeeeeccccccc---------------------ccccCchHHH-----------------------HHH--hhhhc
Q 023563          120 YGLDSIVTHDGVKLPC---------------------CALTTLSSFR-----------------------QKF--GSDAY  153 (280)
Q Consensus       120 ~~~~~v~~~~~~~~~~---------------------~~~~~l~~~~-----------------------~~~--a~aL~  153 (280)
                      ..++-|.|. ..++..                     ....+..++.                       +|.  ||||+
T Consensus       427 ~~iglV~Qe-PvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv  505 (1228)
T KOG0055|consen  427 SQIGLVSQE-PVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV  505 (1228)
T ss_pred             hhcCeeeec-hhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence            344444432 111110                     0011111111                       111  68999


Q ss_pred             cCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|++|||||||+++|      +.+.|.++.+  |+|.|+|+|++..++           -||+|++|++ ++++.|+++
T Consensus       506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRLStIr-----------naD~I~v~~~G~IvE~G~h~  572 (1228)
T KOG0055|consen  506 RNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRLSTIR-----------NADKIAVMEEGKIVEQGTHD  572 (1228)
T ss_pred             hCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeehhhhh-----------ccCEEEEEECCEEEEecCHH
Confidence            9999999999998875      5666666553  999999999999997           5999999999 999999999


Q ss_pred             eeee
Q 023563          227 FFTL  230 (280)
Q Consensus       227 ~~~~  230 (280)
                      |++.
T Consensus       573 ELi~  576 (1228)
T KOG0055|consen  573 ELIA  576 (1228)
T ss_pred             HHHh
Confidence            9984

>PLN03073 ABC transporter F family; Provisional

Probab=99.90  E-value=7.8e-24  Score=214.75  Aligned_cols=167  Identities=19%  Similarity=0.175  Sum_probs=113.2

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch----hCCeeEEEecCCccccc-c----
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET----QKGRNVAVIKSNKDTRY-G----  121 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~----~~g~~i~~~~~~~~~~~-~----  121 (280)
                      .+|+++|++++|+++.+|+|+||+|.+|+++||+||||||||||+ ++|+|..    ..+..+.++.|...... .    
T Consensus       176 ~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLL-r~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~  254 (718)
T PLN03073        176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFL-RYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC  254 (718)
T ss_pred             eeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence            379999999999988899999999999999999999999999999 9999853    24556777766421100 0    


Q ss_pred             ---------------cceeeeeccc-----------------ccc---------------------------cccccCch
Q 023563          122 ---------------LDSIVTHDGV-----------------KLP---------------------------CCALTTLS  142 (280)
Q Consensus       122 ---------------~~~v~~~~~~-----------------~~~---------------------------~~~~~~l~  142 (280)
                                     ++.+.+....                 ...                           .+...++.
T Consensus       255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~  334 (718)
T PLN03073        255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT  334 (718)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence                           0001100000                 000                           00001110


Q ss_pred             -HHHHH--------------HhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCcccc
Q 023563          143 -SFRQK--------------FGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDI  205 (280)
Q Consensus       143 -~~~~~--------------~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~l  205 (280)
                       ...++              .|++|+.+|++||||||++.+|.  .+.+.++.++.+.|||+||||.+++.+        
T Consensus       335 ~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~--------  406 (718)
T PLN03073        335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNT--------  406 (718)
T ss_pred             hHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH--------
Confidence             11111              15689999999999999887652  222333333348899999999999986        


Q ss_pred             ccccceEEEeec-eec-cccCccee
Q 023563          206 IPLADSVTKLTA-RCE-FCGKRAFF  228 (280)
Q Consensus       206 l~~aD~i~~L~~-~i~-~~g~~~~~  228 (280)
                        +||+|++|++ ++. +.|+.+.+
T Consensus       407 --~~d~i~~l~~g~i~~~~g~~~~~  429 (718)
T PLN03073        407 --VVTDILHLHGQKLVTYKGDYDTF  429 (718)
T ss_pred             --hCCEEEEEECCEEEEeCCCHHHH
Confidence              9999999999 775 56765544

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.90  E-value=2.1e-23  Score=180.10  Aligned_cols=142  Identities=19%  Similarity=0.166  Sum_probs=91.8

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeE---------------EEecCC
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNV---------------AVIKSN  115 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i---------------~~~~~~  115 (280)
                      ||+++|++++|+++.+++ +||+|++||+++|+||||||||||+ ++|+|+.. ....+               .++++.
T Consensus         1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   78 (195)
T PRK13541          1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLL-RMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHN   78 (195)
T ss_pred             CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCcccChhhhhhEEeccCC
Confidence            488999999998876665 9999999999999999999999999 99999732 22222               233222


Q ss_pred             cccccc--cceeee-------ecccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH----
Q 023563          116 KDTRYG--LDSIVT-------HDGVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE----  168 (280)
Q Consensus       116 ~~~~~~--~~~v~~-------~~~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~----  168 (280)
                      ......  +...+.       ........+...++....++.              +++++.+|++||||||++..    
T Consensus        79 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~  158 (195)
T PRK13541         79 LGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN  158 (195)
T ss_pred             cCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            110000  000000       000000011111222222211              57899999999999996654    


Q ss_pred             --HHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          169 --DLYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       169 --~i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                        .+.+++++..+ .|.|+|++||+++++.
T Consensus       159 ~~~l~~~l~~~~~-~~~tiii~sh~~~~i~  187 (195)
T PRK13541        159 RDLLNNLIVMKAN-SGGIVLLSSHLESSIK  187 (195)
T ss_pred             HHHHHHHHHHHHh-CCCEEEEEeCCccccc
Confidence              46777766555 4999999999999886

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.90  E-value=6.6e-24  Score=186.10  Aligned_cols=151  Identities=21%  Similarity=0.260  Sum_probs=98.0

Q ss_pred             EEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------cccccc
Q 023563           54 SPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----------KDTRYG  121 (280)
Q Consensus        54 ~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----------~~~~~~  121 (280)
                      .+.|++++|+ +..+++++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...          ...+..
T Consensus         2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   80 (218)
T cd03290           2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLL-LAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS   80 (218)
T ss_pred             eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence            5788999996 46799999999999999999999999999999 99999732 22222111100          000112


Q ss_pred             cceeeeecccc---------c----------ccccccCchHHH-----------------------HH--HhhhhccCCC
Q 023563          122 LDSIVTHDGVK---------L----------PCCALTTLSSFR-----------------------QK--FGSDAYDQVD  157 (280)
Q Consensus       122 ~~~v~~~~~~~---------~----------~~~~~~~l~~~~-----------------------~~--~a~aL~~~p~  157 (280)
                      ++++++.....         .          ......++....                       .+  .|++++.+|+
T Consensus        81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  160 (218)
T cd03290          81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN  160 (218)
T ss_pred             EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence            22222211100         0          000011111111                       01  1678999999


Q ss_pred             EEEEeCcccHHH------HHH--HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          158 VIGIDEAQFFED------LYD--FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       158 lLlLDEP~~~~~------i~~--~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +||||||+...|      +++  +++.+.+ .|.|+|++||+.+++.           .||++++|++
T Consensus       161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~-----------~~d~i~~l~~  216 (218)
T cd03290         161 IVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKLQYLP-----------HADWIIAMKD  216 (218)
T ss_pred             EEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHh-----------hCCEEEEecC
Confidence            999999977654      444  4445544 4899999999999874           7999999875

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.90  E-value=1.1e-23  Score=209.06  Aligned_cols=164  Identities=15%  Similarity=0.123  Sum_probs=114.2

Q ss_pred             cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------e
Q 023563           52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------N  108 (280)
Q Consensus        52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~  108 (280)
                      .|+++||+++|++   +.+|+|+||+|++||.++|+||||||||||+ ++|.|+..        +|.            .
T Consensus       337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLl-klL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~  415 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLF-QLLLRFYDPQSGRILLDGVDLRQLDPAELRAR  415 (576)
T ss_pred             eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence            5999999999964   5699999999999999999999999999999 99999743        221            2


Q ss_pred             EEEecCCccc-----ccccceeeee--cccccccccccCchH-----------------------HHHHH--hhhhccCC
Q 023563          109 VAVIKSNKDT-----RYGLDSIVTH--DGVKLPCCALTTLSS-----------------------FRQKF--GSDAYDQV  156 (280)
Q Consensus       109 i~~~~~~~~~-----~~~~~~v~~~--~~~~~~~~~~~~l~~-----------------------~~~~~--a~aL~~~p  156 (280)
                      +++++|++..     +.++...-..  +......+...++.+                       -++|.  ||+++.+|
T Consensus       416 i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~  495 (576)
T TIGR02204       416 MALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA  495 (576)
T ss_pred             ceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence            4455544321     1111000000  000000001111111                       11221  78999999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++||||||++..      .+++.++++.+  ++|+|++||+++...           .||+|++|++ ++++.|+++++.
T Consensus       496 ~ililDEpts~lD~~~~~~i~~~l~~~~~--~~t~IiitH~~~~~~-----------~~d~vi~l~~g~~~~~g~~~~l~  562 (576)
T TIGR02204       496 PILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRLATVL-----------KADRIVVMDQGRIVAQGTHAELI  562 (576)
T ss_pred             CeEEEeCcccccCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-----------hCCEEEEEECCEEEeeecHHHHH
Confidence            999999997764      36777777643  899999999998875           7999999999 999999988765

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.90  E-value=1.4e-23  Score=208.57  Aligned_cols=164  Identities=15%  Similarity=0.151  Sum_probs=113.8

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i  109 (280)
                      -|+++|++++|++  +.+|+|+||+|++|++++|+||||||||||+ ++|.|+..        +|.            .+
T Consensus       313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl-~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  391 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLL-SLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL  391 (569)
T ss_pred             cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence            5899999999964  5799999999999999999999999999999 99999732        222            23


Q ss_pred             EEecCCccc-----ccccceeeee--cccccccccccCchH-----------------------HHHH--HhhhhccCCC
Q 023563          110 AVIKSNKDT-----RYGLDSIVTH--DGVKLPCCALTTLSS-----------------------FRQK--FGSDAYDQVD  157 (280)
Q Consensus       110 ~~~~~~~~~-----~~~~~~v~~~--~~~~~~~~~~~~l~~-----------------------~~~~--~a~aL~~~p~  157 (280)
                      ++++|+...     +.++......  +.....++...++.+                       .++|  .||+++.+|+
T Consensus       392 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~  471 (569)
T PRK10789        392 AVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE  471 (569)
T ss_pred             EEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            444443221     0000000000  000000011111111                       1111  2789999999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +||||||++..      .+.+.|+++. + |+|+|++||+++.+.           .||+|++|++ +++..|+.+++.
T Consensus       472 illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tii~itH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~  537 (569)
T PRK10789        472 ILILDDALSAVDGRTEHQILHNLRQWG-E-GRTVIISAHRLSALT-----------EASEILVMQHGHIAQRGNHDQLA  537 (569)
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEecchhHHH-----------cCCEEEEEeCCEEEEecCHHHHH
Confidence            99999998764      3677777764 3 899999999998875           6999999999 999999988876

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.90  E-value=7.1e-24  Score=182.17  Aligned_cols=132  Identities=17%  Similarity=0.199  Sum_probs=85.7

Q ss_pred             eCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC--------cccccccceeeeecc-c
Q 023563           62 LQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN--------KDTRYGLDSIVTHDG-V  131 (280)
Q Consensus        62 y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~--------~~~~~~~~~v~~~~~-~  131 (280)
                      |+++.+|+++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...        ...+..+++++++.. .
T Consensus         2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   80 (190)
T TIGR01166         2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLL-LHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ   80 (190)
T ss_pred             CCccceecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence            3567899999999999999999999999999999 99999732 22222211100        001122333333211 0


Q ss_pred             ccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH---
Q 023563          132 KLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF---  167 (280)
Q Consensus       132 ~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~---  167 (280)
                      .+.                           .+...++..+.++.              +++|+.+|++||||||++.   
T Consensus        81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~  160 (190)
T TIGR01166        81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP  160 (190)
T ss_pred             cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence            000                           01111222222111              5689999999999999654   


Q ss_pred             ---HHHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563          168 ---EDLYDFCREAADHDGKTVIVAGLDGDYL  195 (280)
Q Consensus       168 ---~~i~~~l~~l~~~~g~tviivtHdl~~~  195 (280)
                         ..++++|++++++ |+|||++|||++++
T Consensus       161 ~~~~~~~~~l~~~~~~-~~tili~sH~~~~~  190 (190)
T TIGR01166       161 AGREQMLAILRRLRAE-GMTVVISTHDVDLA  190 (190)
T ss_pred             HHHHHHHHHHHHHHHc-CCEEEEEeeccccC
Confidence               4588888888765 99999999998753

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.90  E-value=1.8e-23  Score=204.78  Aligned_cols=168  Identities=18%  Similarity=0.150  Sum_probs=116.7

Q ss_pred             CCccEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---------hCCeeEEEecCCccc
Q 023563           49 IHSMVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---------QKGRNVAVIKSNKDT  118 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---------~~g~~i~~~~~~~~~  118 (280)
                      ..++++++|+++.|++ +.+++++||.|.+|+.+||+||||+|||||| ++|.|..         -.+..++|+.|+...
T Consensus       318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLl-k~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~  396 (530)
T COG0488         318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLL-KLLAGELGPLSGTVKVGETVKIGYFDQHRDE  396 (530)
T ss_pred             CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHH-HHHhhhcccCCceEEeCCceEEEEEEehhhh
Confidence            3568999999999966 6999999999999999999999999999999 9996641         133568888887633


Q ss_pred             ccccceeeeecccccccccccCchHHHH------------------------HHhhhhccCCCEEEEeCcccHHHH--HH
Q 023563          119 RYGLDSIVTHDGVKLPCCALTTLSSFRQ------------------------KFGSDAYDQVDVIGIDEAQFFEDL--YD  172 (280)
Q Consensus       119 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~------------------------~~a~aL~~~p~lLlLDEP~~~~~i--~~  172 (280)
                      ...-..++.......+......+..++.                        ..|+.++.+|.+|||||||+.+|+  ++
T Consensus       397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~  476 (530)
T COG0488         397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLE  476 (530)
T ss_pred             cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHH
Confidence            2111011100000000000000111111                        114457889999999999999864  67


Q ss_pred             HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcce
Q 023563          173 FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAF  227 (280)
Q Consensus       173 ~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~  227 (280)
                      .|.+...+..-|||+||||..++.+          +|++++.+.+ ...+.|..++
T Consensus       477 aLe~aL~~f~Gtvl~VSHDr~Fl~~----------va~~i~~~~~~~~~~~g~y~~  522 (530)
T COG0488         477 ALEEALLDFEGTVLLVSHDRYFLDR----------VATRIWLVEDKVEEFEGGYED  522 (530)
T ss_pred             HHHHHHHhCCCeEEEEeCCHHHHHh----------hcceEEEEcCceeEcCCCHHH
Confidence            7777777788899999999999997          9999999986 3333444433

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.89  E-value=5.4e-24  Score=187.70  Aligned_cols=145  Identities=21%  Similarity=0.214  Sum_probs=97.4

Q ss_pred             eEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC-------eeEEEecCCccccc----ccceee-------
Q 023563           73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG-------RNVAVIKSNKDTRY----GLDSIV-------  126 (280)
Q Consensus        73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g-------~~i~~~~~~~~~~~----~~~~v~-------  126 (280)
                      |+|++||+++|+||||||||||+ ++|+|+..        +|       +.++|++|+.....    .+...+       
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~   79 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLL-RAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH   79 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence            57899999999999999999999 99999732        22       23555555432100    000000       


Q ss_pred             ----eecc-----cccccccccCchHHHHH--------------HhhhhccCCCEEEEeCcccHH------HHHHHHHHH
Q 023563          127 ----THDG-----VKLPCCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEAQFFE------DLYDFCREA  177 (280)
Q Consensus       127 ----~~~~-----~~~~~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l  177 (280)
                          ....     .....+...++..+.++              .+++++.+|++||+|||++..      .+.++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~  159 (223)
T TIGR03771        80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL  159 (223)
T ss_pred             cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                0000     00001111122211111              167899999999999996654      588888888


Q ss_pred             HhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceee
Q 023563          178 ADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFT  229 (280)
Q Consensus       178 ~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~  229 (280)
                      +++ |.|+|++|||++++.+          +||++++++.+++..|+++++.
T Consensus       160 ~~~-~~tvii~sH~~~~~~~----------~~d~i~~l~G~i~~~~~~~~~~  200 (223)
T TIGR03771       160 AGA-GTAILMTTHDLAQAMA----------TCDRVVLLNGRVIADGTPQQLQ  200 (223)
T ss_pred             HHc-CCEEEEEeCCHHHHHH----------hCCEEEEECCEEEeecCHHHhc
Confidence            765 9999999999999876          9999999933888889888876

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.89  E-value=1.1e-23  Score=228.99  Aligned_cols=165  Identities=18%  Similarity=0.145  Sum_probs=117.0

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCee------------E
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRN------------V  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~------------i  109 (280)
                      .|+++||+++|.+  .++|+|+||+|++||.+||+|++|||||||+ ++|.|+.        ++|.+            +
T Consensus      1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl-~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSML-NALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred             cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence            5999999999954  4699999999999999999999999999999 9999873        23433            4


Q ss_pred             EEecCCccc-----ccccceeeee-cccccccccccCchHHH-----------------------HH--HhhhhccCCCE
Q 023563          110 AVIKSNKDT-----RYGLDSIVTH-DGVKLPCCALTTLSSFR-----------------------QK--FGSDAYDQVDV  158 (280)
Q Consensus       110 ~~~~~~~~~-----~~~~~~v~~~-~~~~~~~~~~~~l~~~~-----------------------~~--~a~aL~~~p~l  158 (280)
                      ++++|++..     +.++...-+. +.....++...++.++.                       ++  .||||+.+|++
T Consensus      1316 siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130       1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred             EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence            455554321     1111000000 00000111111121111                       11  17899999999


Q ss_pred             EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      |||||||+..|      +.+.|++..+  ++|+|+|+|.++.+.           -||+|++|++ ++++.|++++++.
T Consensus      1396 LILDEATSaLD~~Te~~Iq~~I~~~~~--~~TvI~IAHRL~tI~-----------~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130       1396 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTII-----------DCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEeCChHHHH-----------hCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999987654      6666666643  899999999999987           5999999999 9999999999983

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.89  E-value=1.6e-23  Score=206.10  Aligned_cols=150  Identities=19%  Similarity=0.182  Sum_probs=101.7

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i  109 (280)
                      -|+++||+++|++  +++|+|+||+|++|+.++|+||||||||||+ ++|.|+..        +|.            .+
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i  398 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLL-NLLLGFVDPTEGSIAVNGVPLADADADSWRDQI  398 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence            5999999999975  4699999999999999999999999999999 99999733        222            23


Q ss_pred             EEecCCccc-----ccccceeee--ecccccccccccCchHHH-----------------------HHH--hhhhccCCC
Q 023563          110 AVIKSNKDT-----RYGLDSIVT--HDGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQVD  157 (280)
Q Consensus       110 ~~~~~~~~~-----~~~~~~v~~--~~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p~  157 (280)
                      ++++|+...     +.++.....  .+.....++...++.++.                       +|.  ||+++.+|+
T Consensus       399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~  478 (529)
T TIGR02857       399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP  478 (529)
T ss_pred             EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence            444443321     000000000  000000111111222111                       111  689999999


Q ss_pred             EEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563          158 VIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL  215 (280)
Q Consensus       158 lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L  215 (280)
                      +||||||++..|      +++.+.++.  .++|+|++||+++.+.           .||+|++|
T Consensus       479 ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-----------~~d~i~~l  529 (529)
T TIGR02857       479 LLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLALAE-----------RADRIVVL  529 (529)
T ss_pred             EEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHH-----------hCCEEEeC
Confidence            999999987653      677777764  3899999999999885           79999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.89  E-value=4.3e-23  Score=185.88  Aligned_cols=155  Identities=17%  Similarity=0.117  Sum_probs=103.1

Q ss_pred             cCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEE-----------EecCCcc-----
Q 023563           56 RPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVA-----------VIKSNKD-----  117 (280)
Q Consensus        56 ~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~-----------~~~~~~~-----  117 (280)
                      .||+++|++. .+|+|+|+ +.+|++++|+||||||||||+ ++|+|+.. ....+.           +......     
T Consensus         4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLl-k~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~   81 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTAL-KILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK   81 (255)
T ss_pred             cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHH-HHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence            4799999765 59999995 999999999999999999999 99999843 233332           1011100     


Q ss_pred             -ccc--ccceeeeecccc---------------------cccccccCchHHHHH--------------HhhhhccCCCEE
Q 023563          118 -TRY--GLDSIVTHDGVK---------------------LPCCALTTLSSFRQK--------------FGSDAYDQVDVI  159 (280)
Q Consensus       118 -~~~--~~~~v~~~~~~~---------------------~~~~~~~~l~~~~~~--------------~a~aL~~~p~lL  159 (280)
                       .+.  .+.++++.....                     ...+...++....++              .+++++.+|+++
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il  161 (255)
T cd03236          82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY  161 (255)
T ss_pred             hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence             000  111122211100                     000111122111111              156899999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceecccc
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCG  223 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g  223 (280)
                      |+|||++..      .+.++|++++++ |+|||++|||++++.+          +||++++|++++.+.|
T Consensus       162 llDEPts~LD~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~----------~ad~i~~l~~~~~~~~  220 (255)
T cd03236         162 FFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDY----------LSDYIHCLYGEPGAYG  220 (255)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHH----------hCCEEEEECCCCCcce
Confidence            999997654      477888888775 8999999999999986          8999999987665443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.89  E-value=1.1e-23  Score=228.08  Aligned_cols=164  Identities=15%  Similarity=0.129  Sum_probs=116.1

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCee------------E
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRN------------V  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~------------i  109 (280)
                      .|+++||+++|++  .++|+|+||+|++||.+||+||+|||||||+ ++|.|+.        ++|.+            +
T Consensus      1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~-~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML-NALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred             cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence            5999999999953  5799999999999999999999999999999 9999973        23333            4


Q ss_pred             EEecCCccc-----ccccceeeee-cccccccccccCchHH-----------------------HHH--HhhhhccCCCE
Q 023563          110 AVIKSNKDT-----RYGLDSIVTH-DGVKLPCCALTTLSSF-----------------------RQK--FGSDAYDQVDV  158 (280)
Q Consensus       110 ~~~~~~~~~-----~~~~~~v~~~-~~~~~~~~~~~~l~~~-----------------------~~~--~a~aL~~~p~l  158 (280)
                      ++++|++..     +.++...-.. +.....++...++.++                       +++  .||||+.+|++
T Consensus      1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232       1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred             EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence            455554321     1111100000 0000011111111111                       111  17899999999


Q ss_pred             EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||||+..|      +.+.|++..+  ++|+|+|+|.++.+.           -||+|++|++ ++++.|+++++.
T Consensus      1393 LILDEATSaLD~~Te~~Iq~~L~~~~~--~~TvI~IAHRl~ti~-----------~~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232       1393 LVLDEATASVDVRTDSLIQRTIREEFK--SCTMLVIAHRLNTII-----------DCDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence            99999987654      5566665543  899999999999987           5999999999 999999999987

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=2e-23  Score=186.37  Aligned_cols=160  Identities=19%  Similarity=0.228  Sum_probs=118.8

Q ss_pred             ceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCC---cccccccceee
Q 023563           58 PLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSN---KDTRYGLDSIV  126 (280)
Q Consensus        58 ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~---~~~~~~~~~v~  126 (280)
                      +.+++|+..+  +++|+.+.-.+++|.|+||||||||+ ++|+|+..        +|+-+......   +..+..++|+|
T Consensus         6 ~~~~lG~~~l--~a~~~~p~~GvTAlFG~SGsGKTsli-n~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVF   82 (352)
T COG4148           6 FRQRLGNFAL--DANFTLPARGITALFGPSGSGKTSLI-NMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF   82 (352)
T ss_pred             hhhhcCceEE--EEeccCCCCceEEEecCCCCChhhHH-HHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEe
Confidence            5566676543  78999998779999999999999999 99999832        22211100000   00123345555


Q ss_pred             eecccccc----------------------cccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH--
Q 023563          127 THDGVKLP----------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE--  168 (280)
Q Consensus       127 ~~~~~~~~----------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~--  168 (280)
                      |. ..+++                      ...+.++.++++++              ||||+..|++||||||.+.+  
T Consensus        83 QD-ARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~  161 (352)
T COG4148          83 QD-ARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL  161 (352)
T ss_pred             ec-cccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence            42 11111                      12345677777766              78999999999999995543  


Q ss_pred             ----HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563          169 ----DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       169 ----~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~  231 (280)
                          +++-.|+++.++.++.|+.|||.++++.+          +||+|++|++ ++.+.|+.+++..+
T Consensus       162 ~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~R----------LAd~vV~le~GkV~A~g~~e~v~~~  219 (352)
T COG4148         162 PRKREILPYLERLRDEINIPILYVSHSLDEVLR----------LADRVVVLENGKVKASGPLEEVWGS  219 (352)
T ss_pred             chhhHHHHHHHHHHHhcCCCEEEEecCHHHHHh----------hhheEEEecCCeEEecCcHHHHhcC
Confidence                58999999999999999999999999987          9999999999 99999999998744

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.89  E-value=1e-22  Score=201.48  Aligned_cols=159  Identities=17%  Similarity=0.155  Sum_probs=105.2

Q ss_pred             cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------ccccccc
Q 023563           52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~~  123 (280)
                      .|+++|++++|++ .++|+|+||+|++|+.++|+||||||||||+ ++|.|+.. ....+.+-..+.      ..+..+.
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  400 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLA-MLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS  400 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE
Confidence            5999999999964 5699999999999999999999999999999 99999732 222221111100      0112222


Q ss_pred             eeeeecccc----------------cccccc----------------cCch-HHHHH--HhhhhccCCCEEEEeCcccHH
Q 023563          124 SIVTHDGVK----------------LPCCAL----------------TTLS-SFRQK--FGSDAYDQVDVIGIDEAQFFE  168 (280)
Q Consensus       124 ~v~~~~~~~----------------~~~~~~----------------~~l~-~~~~~--~a~aL~~~p~lLlLDEP~~~~  168 (280)
                      ++.|.....                ...+..                .+++ ..++|  .|||++.+|++||||||++..
T Consensus       401 ~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~L  480 (547)
T PRK10522        401 AVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQ  480 (547)
T ss_pred             EEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence            222210000                000000                1121 11122  278999999999999998765


Q ss_pred             H------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          169 D------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       169 ~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      |      +++.+.++.++.|+|+|++||+++.+.           .||+|++|++ +++..
T Consensus       481 D~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-----------~~d~i~~l~~G~i~e~  530 (547)
T PRK10522        481 DPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-----------HADRLLEMRNGQLSEL  530 (547)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-----------hCCEEEEEECCEEEEe
Confidence            3      556665554334899999999998765           7999999998 76543

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.89  E-value=1e-22  Score=178.66  Aligned_cols=150  Identities=14%  Similarity=0.115  Sum_probs=95.7

Q ss_pred             eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-ccccccceeee----eccccc-----c
Q 023563           66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-DTRYGLDSIVT----HDGVKL-----P  134 (280)
Q Consensus        66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-~~~~~~~~v~~----~~~~~~-----~  134 (280)
                      .+|+||||+|++|++++|+||||||||||+ ++|+|+.. ....+..+.... ..... ..++.    .++...     .
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~~~sG~i~~~~~~~~~~~~~-~~l~~~ltv~enl~~~~~~~~   78 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLT-RLLCGLDAPDEGDFIGLRGDALPLGAN-SFILPGLTGEENARMMASLYG   78 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCccCCCCCEEEecCceeccccc-cccCCcCcHHHHHHHHHHHcC
Confidence            379999999999999999999999999999 99999842 222332111100 00000 00000    000000     0


Q ss_pred             ---------cccccCchHHHHH--------------HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEE
Q 023563          135 ---------CCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTV  185 (280)
Q Consensus       135 ---------~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tv  185 (280)
                               .....++....++              .+++++.+|+++|||||++..      .+++.+.+..+  +.++
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~i  156 (213)
T PRK15177         79 LDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGL  156 (213)
T ss_pred             CCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcE
Confidence                     0001112111111              167899999999999995433      35555544333  5689


Q ss_pred             EEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          186 IVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       186 iivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |++||+++++.+          +||++++|++ ++++.++.++..
T Consensus       157 i~vsH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~  191 (213)
T PRK15177        157 IVLTHNPRLIKE----------HCHAFGVLLHGKITMCEDLAQAT  191 (213)
T ss_pred             EEEECCHHHHHH----------hcCeeEEEECCeEEEeCCHHHHH
Confidence            999999999976          9999999999 999888877663

>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]

Probab=99.89  E-value=1.4e-22  Score=171.47  Aligned_cols=198  Identities=61%  Similarity=1.020  Sum_probs=172.8

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhh-hhc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGS-DAY  153 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~-aL~  153 (280)
                      -.+|++..|+||+-|||||-|++.+-.....|+.+..+....+.|+.-..+..+++.-.+.+...+ ..+..+++. ++-
T Consensus        24 ~t~G~i~vI~gPMfSGKTt~LLrr~r~~~~~grrv~liK~~kDTRy~~~si~Thdg~~~~c~~lp~-a~~~s~f~~d~~~  102 (234)
T KOG3125|consen   24 MTRGTIHVILGPMFSGKTTELLRRIRREIIAGRRVLLIKYAKDTRYESSSIVTHDGIEMPCWALPD-ASFLSEFGKDALN  102 (234)
T ss_pred             CCCceEEEEeccccCcchHHHHHHHHHHHhcCceEEEEEecCCcccchheeEeccCCcccccccCC-chhHHHHHHHHhc
Confidence            457999999999999999999777777788899999999988888887778888887777776666 455565654 455


Q ss_pred             cCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeec
Q 023563          154 DQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKT  233 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~  233 (280)
                      .+-++|.+||.+|..++++..+++++.+|++|++...|-++-+++|+.+.+|+++||.|.-|..+|.+||.-+.+..|.+
T Consensus       103 ~~vdVigIDEaQFf~dl~efc~evAd~~Gk~VivagLdgdF~Rk~Fg~il~Lvplad~v~kLtavC~~Cg~~a~Ft~R~~  182 (234)
T KOG3125|consen  103 GDVDVIGIDEAQFFGDLYEFCREVADVHGKTVIVAGLDGDFKRKPFGAILDLVPLADSVTKLTAVCEECGADARFTLRKT  182 (234)
T ss_pred             CcceEEEecHHHHhHHHHHHHHHHHhccCCEEEEEecCCchhhCcchhhhhhHhhhhhhhhhhhhhhhhcccceeEeeec
Confidence            68999999999999999999999999679999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEeCCccceeeeccchhc-cCcchhHhhhchhcccc
Q 023563          234 EETKTELIGGSDIYMPVCRQHYV-SGQVVVEAARIVLESQK  273 (280)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~  273 (280)
                      .+...+++|+.+.|.+.||+||. -++...+..+++.|.+.
T Consensus       183 ~~K~ve~iggaDvy~pvcr~~yv~~~~~~~e~~kt~~e~~d  223 (234)
T KOG3125|consen  183 NDKEVEVIGGADVYMPVCRKCYVVCGQCATEKTKTVCEVSD  223 (234)
T ss_pred             CCceeEEccCcceeecccceeEEEeccccchhhccccccCC
Confidence            99999999999999999999998 45555556666666654

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.88  E-value=7e-23  Score=202.96  Aligned_cols=156  Identities=19%  Similarity=0.174  Sum_probs=103.0

Q ss_pred             cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------ccc
Q 023563           52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTR  119 (280)
Q Consensus        52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~  119 (280)
                      .|+++||+++|++     +.+|+|+||+|++|++++|+||||||||||+ ++|.|+.. ....+.+-..+.      ..+
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~-~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~  415 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLA-KLFCGLYIPQEGEILLDGAAVSADSRDDYR  415 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence            5999999999975     2599999999999999999999999999999 99999732 222222111000      011


Q ss_pred             cccceeeeecccc-----------------cccccccC-----------------chH-HHHHH--hhhhccCCCEEEEe
Q 023563          120 YGLDSIVTHDGVK-----------------LPCCALTT-----------------LSS-FRQKF--GSDAYDQVDVIGID  162 (280)
Q Consensus       120 ~~~~~v~~~~~~~-----------------~~~~~~~~-----------------l~~-~~~~~--a~aL~~~p~lLlLD  162 (280)
                      ..++++.|.....                 ...+...+                 ++. ..+|.  ||+++.+|++||||
T Consensus       416 ~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililD  495 (555)
T TIGR01194       416 DLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFD  495 (555)
T ss_pred             hhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            2222333211000                 00011111                 211 11222  78999999999999


Q ss_pred             CcccHHH------HHHHHH-HHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563          163 EAQFFED------LYDFCR-EAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       163 EP~~~~~------i~~~l~-~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                      ||++..|      +.+.+. .+.. .|+|+|++||+++.+.           .||+|++|++ +++
T Consensus       496 E~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~~~~~-----------~~d~i~~l~~G~i~  549 (555)
T TIGR01194       496 EWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDDQYFE-----------LADQIIKLAAGCIV  549 (555)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHH-----------hCCEEEEEECCEEE
Confidence            9987653      444343 3433 3899999999998764           7999999998 765

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.88  E-value=3.6e-23  Score=224.57  Aligned_cols=164  Identities=20%  Similarity=0.161  Sum_probs=116.1

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCee------------E
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRN------------V  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~------------i  109 (280)
                      -|+++||+++|+.  ..+|+||||+|++||.+||+|++|||||||+ ++|.++.        ++|.+            +
T Consensus      1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~-~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLT-LGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred             cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence            5999999999964  4699999999999999999999999999999 9999872        24433            4


Q ss_pred             EEecCCccc-----ccccceeee-ecccccccccccCchHH-----------------------HHHH--hhhhccCCCE
Q 023563          110 AVIKSNKDT-----RYGLDSIVT-HDGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVDV  158 (280)
Q Consensus       110 ~~~~~~~~~-----~~~~~~v~~-~~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~l  158 (280)
                      ++++|++..     +.++...-. .+.....++...++.++                       +++.  ||||+.+|++
T Consensus      1363 ~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957      1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred             eEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence            455554321     111110000 00000001111111111                       1111  7899999999


Q ss_pred             EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||||+..|      +.+.|++..+  ++|+|+|+|+++.+.           .||+|++|++ ++++.|++++++
T Consensus      1443 LiLDEaTSalD~~Te~~Iq~~l~~~~~--~~TvI~IAHRl~ti~-----------~~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957      1443 LVLDEATAAVDLETDNLIQSTIRTQFE--DCTVLTIAHRLNTIM-----------DYTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence            99999987653      5566665543  899999999999987           5999999999 999999999987

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=99.88  E-value=4.4e-23  Score=223.86  Aligned_cols=164  Identities=17%  Similarity=0.091  Sum_probs=114.8

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCee------------E
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRN------------V  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~------------i  109 (280)
                      -|+++||+++|.+  ..+|+||||+|++||.+||+|++|||||||+ ++|.|+.        ++|.+            +
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl-~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLL-LTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence            5999999999954  4599999999999999999999999999999 9999873        24443            3


Q ss_pred             EEecCCccc-----ccccceeee-ecccccccccccCchHHH-----------------------HH--HhhhhccC-CC
Q 023563          110 AVIKSNKDT-----RYGLDSIVT-HDGVKLPCCALTTLSSFR-----------------------QK--FGSDAYDQ-VD  157 (280)
Q Consensus       110 ~~~~~~~~~-----~~~~~~v~~-~~~~~~~~~~~~~l~~~~-----------------------~~--~a~aL~~~-p~  157 (280)
                      ++++|++..     +.++...-. .+.....++...++.++.                       ++  .||||+.+ |+
T Consensus      1387 ~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243       1387 SMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred             eEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence            444444321     111110000 000000111111222111                       11  17899985 89


Q ss_pred             EEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +|||||||+..|      +.+.|++..+  ++|+|+|+|.++.+.           .||+|++|++ ++++.|+++++.
T Consensus      1467 ILlLDEATSaLD~~te~~Iq~~L~~~~~--~~TvI~IAHRl~ti~-----------~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243       1467 FILMDEATANIDPALDRQIQATVMSAFS--AYTVITIAHRLHTVA-----------QYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHHCC--CCEEEEEeccHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence            999999988643      5566665533  899999999999886           6999999999 999999999987

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.88  E-value=1.4e-22  Score=204.41  Aligned_cols=155  Identities=12%  Similarity=0.083  Sum_probs=107.4

Q ss_pred             ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-------CeeEEEecCCccccc
Q 023563           51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-------GRNVAVIKSNKDTRY  120 (280)
Q Consensus        51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-------g~~i~~~~~~~~~~~  120 (280)
                      .+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..  .       ...+++++|++....
T Consensus       450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl-~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~  528 (659)
T TIGR00954       450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLF-RILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL  528 (659)
T ss_pred             CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC
Confidence            4799999999994 56899999999999999999999999999999 99999843  1       235677777643211


Q ss_pred             -ccceeee----------e---cccccccccccCchHHHHH-----------------------HhhhhccCCCEEEEeC
Q 023563          121 -GLDSIVT----------H---DGVKLPCCALTTLSSFRQK-----------------------FGSDAYDQVDVIGIDE  163 (280)
Q Consensus       121 -~~~~v~~----------~---~~~~~~~~~~~~l~~~~~~-----------------------~a~aL~~~p~lLlLDE  163 (280)
                       .+...+.          .   .......+...++.++.++                       .||+++.+|++|||||
T Consensus       529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE  608 (659)
T TIGR00954       529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE  608 (659)
T ss_pred             cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence             1100000          0   0000111222233322211                       1689999999999999


Q ss_pred             cccHHH--HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          164 AQFFED--LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       164 P~~~~~--i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      |++..|  ..+.+.++.++.|+|+|++||+++.+.           +||++++|+.
T Consensus       609 pts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~-----------~~d~il~l~~  653 (659)
T TIGR00954       609 CTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK-----------YHEYLLYMDG  653 (659)
T ss_pred             CccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHH-----------hCCEEEEEeC
Confidence            988764  233344444445999999999999875           8999999975

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.88  E-value=7e-23  Score=221.03  Aligned_cols=166  Identities=15%  Similarity=0.173  Sum_probs=115.1

Q ss_pred             cEEEcCceEEeC---CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-----------------------
Q 023563           52 MVSPRPPLFSLQ---NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-----------------------  105 (280)
Q Consensus        52 ~l~~~~ls~~y~---~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-----------------------  105 (280)
                      -|+++||+|+|.   +.++|+|+||+|++|+.+||+||||||||||+ ++|.|+...                       
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~-~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVM-SLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHH-HHHHHhCCCccccccccccccccccccccccc
Confidence            499999999995   34799999999999999999999999999999 999997442                       


Q ss_pred             --------------------------------CeeEEEecCC------cccccccceeeeecccc---------c-----
Q 023563          106 --------------------------------GRNVAVIKSN------KDTRYGLDSIVTHDGVK---------L-----  133 (280)
Q Consensus       106 --------------------------------g~~i~~~~~~------~~~~~~~~~v~~~~~~~---------~-----  133 (280)
                                                      ...|.+-..+      ...|..++++.|...++         .     
T Consensus      1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~a 1323 (1466)
T PTZ00265       1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDA 1323 (1466)
T ss_pred             cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCC
Confidence                                            2222211111      01123334444321110         0     


Q ss_pred             ------ccccccCchHHHH-----------------------HH--hhhhccCCCEEEEeCcccHHH------HHHHHHH
Q 023563          134 ------PCCALTTLSSFRQ-----------------------KF--GSDAYDQVDVIGIDEAQFFED------LYDFCRE  176 (280)
Q Consensus       134 ------~~~~~~~l~~~~~-----------------------~~--a~aL~~~p~lLlLDEP~~~~~------i~~~l~~  176 (280)
                            .+....++.++..                       |.  ||||+.+|++|||||||+.+|      +.+.|.+
T Consensus      1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265       1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred             CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence                  0011112222211                       11  789999999999999988764      6677777


Q ss_pred             HHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-----e-eccccCcceee
Q 023563          177 AADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-----R-CEFCGKRAFFT  229 (280)
Q Consensus       177 l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-----~-i~~~g~~~~~~  229 (280)
                      +.+..++|+|+|+|.+..+.           .||+|++|++     + +++.|+.++++
T Consensus      1404 ~~~~~~~TvIiIaHRlsti~-----------~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265       1404 IKDKADKTIITIAHRIASIK-----------RSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred             HhccCCCEEEEEechHHHHH-----------hCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence            75223899999999999886           6999999986     4 34789998887

>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2

Probab=99.88  E-value=2.8e-22  Score=171.06  Aligned_cols=173  Identities=46%  Similarity=0.789  Sum_probs=136.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccc--cccCchHHHHHHhhhhccC
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC--ALTTLSSFRQKFGSDAYDQ  155 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~l~~~~~~~a~aL~~~  155 (280)
                      |+++.+.||++|||||.|++.+..+...|+++..+.+..+.|+....+..+.+...++.  ....+.++..    .+..+
T Consensus         1 g~l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D~R~~~~~I~s~~g~~~~~~~~~~~~~~~~~~----~~~~~   76 (176)
T PF00265_consen    1 GKLEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAIDTRYGEDKIVSHDGISLEAIVDPIDNLFEIID----ILEND   76 (176)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTSCCCCSSEEEHTTSCEEEEESSEESSGGGGGG----GCCTT
T ss_pred             CEEEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecccCcCCCCeEEecCCCcccccccchhhHHHHHH----HhccC
Confidence            78999999999999999988888888899999999998888887766777777655544  2233333322    23445


Q ss_pred             CCEEEEeCcccHH-HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecC
Q 023563          156 VDVIGIDEAQFFE-DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE  234 (280)
Q Consensus       156 p~lLlLDEP~~~~-~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~  234 (280)
                      +++++.||.+|.. ++.+++..+.+. |+.|++.+.|.++-.++|+++..|+++||.|.-|+..|..||.++....|...
T Consensus        77 ~dvI~IDEaQFf~~~i~~l~~~~~~~-g~~Vi~~GL~~df~~~~F~~~~~Ll~~Ad~i~kl~avC~~Cg~~A~~t~R~~~  155 (176)
T PF00265_consen   77 YDVIGIDEAQFFDEQIVQLVEILANK-GIPVICAGLDTDFRGEPFGGSPRLLPLADKITKLKAVCEVCGRKATFTQRIVD  155 (176)
T ss_dssp             CSEEEESSGGGSTTTHHHHHHHHHHT-T-EEEEEEESB-TTSSB-TTHHHHHHH-SEEEEE-EE-TTTSSEE-EEEEEET
T ss_pred             CCEEEEechHhhHHHHHHHHHHHHhC-CCeEEEEeeCCccccCcchhHHHHHhhCCeEEEeccEECCCCCceeEEEEEcC
Confidence            9999999998877 788888887765 99999999999999999999999999999999999999999999999989887


Q ss_pred             CCcEEEeCCccceeeeccchh
Q 023563          235 ETKTELIGGSDIYMPVCRQHY  255 (280)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~  255 (280)
                      ......+|+++.|.++||+||
T Consensus       156 ~~~~i~iGg~e~Y~~~Cr~cy  176 (176)
T PF00265_consen  156 DGEQILIGGSEKYEPVCRKCY  176 (176)
T ss_dssp             TSSSS-TTSTTTEEEE-CTTH
T ss_pred             CCCEEEECCCCeEEEechhhC
Confidence            777778899999999999998

7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=5.6e-23  Score=171.69  Aligned_cols=155  Identities=18%  Similarity=0.202  Sum_probs=109.2

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCcccccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNKDTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~~~~~~~~  123 (280)
                      .++++++.+.-++.++|+++||++.+||+++|.||||||||||+ ++++.+        .+.|+++....+. ..|..+.
T Consensus         3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStll-k~va~Lisp~~G~l~f~Ge~vs~~~pe-a~Rq~Vs   80 (223)
T COG4619           3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLL-KIVASLISPTSGTLLFEGEDVSTLKPE-AYRQQVS   80 (223)
T ss_pred             chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHH-HHHHhccCCCCceEEEcCccccccChH-HHHHHHH
Confidence            56778887777889999999999999999999999999999999 988886        3345555433332 1233344


Q ss_pred             eeeeec---------cccccccccc---C---chHHHHHH------------------------hhhhccCCCEEEEeCc
Q 023563          124 SIVTHD---------GVKLPCCALT---T---LSSFRQKF------------------------GSDAYDQVDVIGIDEA  164 (280)
Q Consensus       124 ~v~~~~---------~~~~~~~~~~---~---l~~~~~~~------------------------a~aL~~~p~lLlLDEP  164 (280)
                      ++.|+.         +..++.....   +   ...+..++                        .|.|..-|++||||||
T Consensus        81 Y~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~  160 (223)
T COG4619          81 YCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI  160 (223)
T ss_pred             HHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence            443322         2222211000   0   01111111                        3457789999999999


Q ss_pred             ccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeece
Q 023563          165 QFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTAR  218 (280)
Q Consensus       165 ~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~  218 (280)
                      |+.+|      +-++|.++.++.+++++++|||.+.+.+          ++|+++-+...
T Consensus       161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~r----------ha~k~itl~~G  210 (223)
T COG4619         161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIR----------HADKVITLQPG  210 (223)
T ss_pred             hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhh----------hhheEEEeccC
Confidence            87764      7788888886679999999999999876          99999998773

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.88  E-value=1.6e-22  Score=219.15  Aligned_cols=164  Identities=16%  Similarity=0.124  Sum_probs=115.7

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-------CCe------------eEE
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-------KGR------------NVA  110 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-------~g~------------~i~  110 (280)
                      -|+++||+++|+.  ..+|+||||+|++||.+||+|++|||||||+ ++|.|+..       +|.            .++
T Consensus      1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl-~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLL-SALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred             eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHH-HHHhhhcCCCcEEEECCEEcccCCHHHHHhceE
Confidence            5999999999963  6799999999999999999999999999999 99988743       222            234


Q ss_pred             EecCCccc-----ccccceeee-ecccccccccccCchHH-----------------------HHH--HhhhhccCCCEE
Q 023563          111 VIKSNKDT-----RYGLDSIVT-HDGVKLPCCALTTLSSF-----------------------RQK--FGSDAYDQVDVI  159 (280)
Q Consensus       111 ~~~~~~~~-----~~~~~~v~~-~~~~~~~~~~~~~l~~~-----------------------~~~--~a~aL~~~p~lL  159 (280)
                      +++|++..     |.++...-. .+.....++...++.++                       +++  .||||+.+|+||
T Consensus      1296 ~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271      1296 VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred             EEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence            44444321     111100000 00000011111111111                       111  178999999999


Q ss_pred             EEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          160 GIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       160 lLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||||+..|      +.+.|++..+  ++|||+|+|.++.+.           .||+|++|++ +++..|+|.++.
T Consensus      1376 lLDEaTS~lD~~Te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-----------~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271      1376 LLDEPSAHLDPVTLQIIRKTLKQSFS--NCTVILSEHRVEALL-----------ECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-----------hCCEEEEEECCEEEEeCCHHHHH
Confidence            9999987653      6666666543  899999999999886           6999999999 999999999987

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.87  E-value=1.8e-22  Score=217.86  Aligned_cols=51  Identities=18%  Similarity=0.221  Sum_probs=47.4

Q ss_pred             cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      -|+++||+++|++   ..+|+|+||+|++|++++|+||||||||||+ ++|.|+.
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl-~lL~gl~  435 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTIL-KLIERLY  435 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHH-HHHHHhc
Confidence            5999999999975   3699999999999999999999999999999 9999973

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.87  E-value=8.4e-23  Score=200.98  Aligned_cols=138  Identities=22%  Similarity=0.221  Sum_probs=92.9

Q ss_pred             cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCe-----------eEEE
Q 023563           52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGR-----------NVAV  111 (280)
Q Consensus        52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~-----------~i~~  111 (280)
                      -|+++||+++|++ +.+|+|+||+|++|+.++|+||||||||||+ ++|.|+.        ++|.           .+++
T Consensus       334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl-~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~  412 (529)
T TIGR02868       334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLL-MLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISV  412 (529)
T ss_pred             eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEE
Confidence            4999999999965 5699999999999999999999999999999 9999973        2342           3556


Q ss_pred             ecCCccc-----ccccceeee--ecccccccccccCchHHH-----------------------HHH--hhhhccCCCEE
Q 023563          112 IKSNKDT-----RYGLDSIVT--HDGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQVDVI  159 (280)
Q Consensus       112 ~~~~~~~-----~~~~~~v~~--~~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p~lL  159 (280)
                      ++|++..     +.++...-.  .+.....++...++.++.                       +|.  |||++.+|++|
T Consensus       413 V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~il  492 (529)
T TIGR02868       413 FAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL  492 (529)
T ss_pred             EccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            6665432     111100000  000001111111222221                       121  78999999999


Q ss_pred             EEeCcccHHH------HHHHHHHHHhhcCCEEEEEEech
Q 023563          160 GIDEAQFFED------LYDFCREAADHDGKTVIVAGLDG  192 (280)
Q Consensus       160 lLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl  192 (280)
                      ||||||+..|      +.+.+.++.  .++|+|++||++
T Consensus       493 iLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl  529 (529)
T TIGR02868       493 LLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL  529 (529)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence            9999987654      666666553  289999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.87  E-value=1.3e-22  Score=171.82  Aligned_cols=170  Identities=15%  Similarity=0.175  Sum_probs=120.8

Q ss_pred             ccEEEcCceEEeCC---------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC-------
Q 023563           51 SMVSPRPPLFSLQN---------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG-------  106 (280)
Q Consensus        51 ~~l~~~~ls~~y~~---------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g-------  106 (280)
                      ++++++|++|.|..         ..+++.|||++++|+..+|+|.||||||||. ++++|...        ++       
T Consensus         3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLa-kMlaGmi~PTsG~il~n~~~L~~~D   81 (267)
T COG4167           3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLA-KMLAGMIEPTSGEILINDHPLHFGD   81 (267)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHH-HHHhcccCCCCceEEECCccccccc
Confidence            47899999998842         4689999999999999999999999999999 99999732        12       


Q ss_pred             -----eeEEEecCCccc----ccccceeeee-------------cccccccccccCc-------------hHHHHH--Hh
Q 023563          107 -----RNVAVIKSNKDT----RYGLDSIVTH-------------DGVKLPCCALTTL-------------SSFRQK--FG  149 (280)
Q Consensus       107 -----~~i~~~~~~~~~----~~~~~~v~~~-------------~~~~~~~~~~~~l-------------~~~~~~--~a  149 (280)
                           +.|..++|++..    |..++.+...             ....++.+..+++             .....+  .|
T Consensus        82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLA  161 (267)
T COG4167          82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALA  161 (267)
T ss_pred             hHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHH
Confidence                 122233332221    1111111110             0000111111111             001111  17


Q ss_pred             hhhccCCCEEEEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          150 SDAYDQVDVIGIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      |||+.+|+++|.||...      +.++.+++.++.++.|++.|.|+.++..+.-          ++|.|++|+. +++..
T Consensus       162 RALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKH----------i~D~viVM~EG~vvE~  231 (267)
T COG4167         162 RALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKH----------ISDQVLVMHEGEVVER  231 (267)
T ss_pred             HHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhh----------hcccEEEEecCceeec
Confidence            89999999999999943      4468899999999999999999999999986          8999999999 99999


Q ss_pred             cCcceeeee
Q 023563          223 GKRAFFTLR  231 (280)
Q Consensus       223 g~~~~~~~~  231 (280)
                      |++.+++..
T Consensus       232 G~t~~v~a~  240 (267)
T COG4167         232 GSTADVLAS  240 (267)
T ss_pred             CChhhhhcC
Confidence            999999843

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.87  E-value=5.6e-22  Score=213.52  Aligned_cols=166  Identities=16%  Similarity=0.193  Sum_probs=114.0

Q ss_pred             ccEEEcCceEEeC----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----CCeeEEEecCCc--cccc
Q 023563           51 SMVSPRPPLFSLQ----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----KGRNVAVIKSNK--DTRY  120 (280)
Q Consensus        51 ~~l~~~~ls~~y~----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~g~~i~~~~~~~--~~~~  120 (280)
                      .+++++||++.|+    ++.+|+|||++|++|++++|+||||||||||+ ++|+|+..    ....+.+-....  ..+.
T Consensus       758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL-~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~  836 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLL-NVLAERVTTGVITGGDRLVNGRPLDSSFQR  836 (1394)
T ss_pred             ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHH-HHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence            3689999999994    46799999999999999999999999999999 99999753    212222211110  1122


Q ss_pred             ccceeeeeccccc------------------------------ccccccCchHHH----------------HH--Hhhhh
Q 023563          121 GLDSIVTHDGVKL------------------------------PCCALTTLSSFR----------------QK--FGSDA  152 (280)
Q Consensus       121 ~~~~v~~~~~~~~------------------------------~~~~~~~l~~~~----------------~~--~a~aL  152 (280)
                      .++++.|++....                              ..+...++.+.+                ++  .|++|
T Consensus       837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL  916 (1394)
T TIGR00956       837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL  916 (1394)
T ss_pred             ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH
Confidence            2333333211100                              001111111111                11  16789


Q ss_pred             ccCCC-EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec--eecccc
Q 023563          153 YDQVD-VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA--RCEFCG  223 (280)
Q Consensus       153 ~~~p~-lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~--~i~~~g  223 (280)
                      +.+|+ +|+|||||+.+      .+++.|++++++ |+|||+++|+++...         +..+|++++|++  ++++.|
T Consensus       917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~~~---------~~~~D~vl~L~~GG~iv~~G  986 (1394)
T TIGR00956       917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAIL---------FEEFDRLLLLQKGGQTVYFG  986 (1394)
T ss_pred             HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHH---------HHhcCEEEEEcCCCEEEEEC
Confidence            99997 99999997755      488999999875 999999999998632         127999999985  788999


Q ss_pred             Ccce
Q 023563          224 KRAF  227 (280)
Q Consensus       224 ~~~~  227 (280)
                      ++.+
T Consensus       987 ~~~~  990 (1394)
T TIGR00956       987 DLGE  990 (1394)
T ss_pred             Cccc
Confidence            8754

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.87  E-value=6.5e-22  Score=162.73  Aligned_cols=149  Identities=15%  Similarity=0.165  Sum_probs=101.3

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-----------hhCCeeEEEecCCccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-----------TQKGRNVAVIKSNKDTRY  120 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-----------~~~g~~i~~~~~~~~~~~  120 (280)
                      |+.++||+.+.+++-+|-++||+|.+|||+.|+||||||||||+ ..+.|.           ..+++++..++..   +.
T Consensus         2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLl-s~~~G~La~~F~~~G~~~l~~~~l~~lPa~---qR   77 (213)
T COG4136           2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLL-SWMIGALAGQFSCTGELWLNEQRLDMLPAA---QR   77 (213)
T ss_pred             ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHH-HHHHhhcccCcceeeEEEECCeeccccchh---hh
Confidence            68999999999999999999999999999999999999999999 877774           2344444433322   22


Q ss_pred             ccceeeeeccccccc---------------------------ccccCchHHHHHH--------------hhhhccCCCEE
Q 023563          121 GLDSIVTHDGVKLPC---------------------------CALTTLSSFRQKF--------------GSDAYDQVDVI  159 (280)
Q Consensus       121 ~~~~v~~~~~~~~~~---------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lL  159 (280)
                      .++.+|| +.++++.                           +...++..+..+.              -|+|+.+|+.+
T Consensus        78 q~GiLFQ-D~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~l  156 (213)
T COG4136          78 QIGILFQ-DALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKAL  156 (213)
T ss_pred             heeeeec-ccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCccee
Confidence            2232332 2222221                           2222233222221              24788999999


Q ss_pred             EEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          160 GIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       160 lLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                      +||||.+++|      .++.+-.-..+.|+..|+||||.+.+.           ...||+-|.
T Consensus       157 LLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-----------agsrVie~~  208 (213)
T COG4136         157 LLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-----------AGSRVIEMA  208 (213)
T ss_pred             eeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-----------CCCeeeeee
Confidence            9999988765      344443333445999999999999875           466666553

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.86  E-value=3.8e-22  Score=190.02  Aligned_cols=168  Identities=21%  Similarity=0.212  Sum_probs=123.6

Q ss_pred             cEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------------------hCCeeE
Q 023563           52 MVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------------------QKGRNV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------------------~~g~~i  109 (280)
                      .|.++++++.=.  ++++++|+||++.+||.+|||||||||||||. |+|.|..                    ..|+.|
T Consensus       334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLa-R~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi  412 (580)
T COG4618         334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLA-RLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI  412 (580)
T ss_pred             eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHH-HHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence            589999987553  36899999999999999999999999999999 9999962                    257788


Q ss_pred             EEecCCcccccc-cceeeeecc------ccccccccc----------------------Cc-hHHHHHH--hhhhccCCC
Q 023563          110 AVIKSNKDTRYG-LDSIVTHDG------VKLPCCALT----------------------TL-SSFRQKF--GSDAYDQVD  157 (280)
Q Consensus       110 ~~~~~~~~~~~~-~~~v~~~~~------~~~~~~~~~----------------------~l-~~~~~~~--a~aL~~~p~  157 (280)
                      +|++|+...-.+ +...+.+..      ...++....                      .+ ...+++.  ||||..+|.
T Consensus       413 GYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~  492 (580)
T COG4618         413 GYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPF  492 (580)
T ss_pred             CcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence            888887553211 000000000      000000000                      11 1222333  689999999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      +++||||.+.+      .+.+.|..++++ |.|+|++||......           .+|+|.+|++ ++...|+.+|+..
T Consensus       493 lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r-G~~vvviaHRPs~L~-----------~~Dkilvl~~G~~~~FG~r~eVLa  560 (580)
T COG4618         493 LVVLDEPNSNLDSEGEAALAAAILAAKAR-GGTVVVIAHRPSALA-----------SVDKILVLQDGRIAAFGPREEVLA  560 (580)
T ss_pred             EEEecCCCCCcchhHHHHHHHHHHHHHHc-CCEEEEEecCHHHHh-----------hcceeeeecCChHHhcCCHHHHHH
Confidence            99999995443      378888888876 999999999999876           7999999999 9999999999885


Q ss_pred             ee
Q 023563          231 RK  232 (280)
Q Consensus       231 ~~  232 (280)
                      ..
T Consensus       561 ~~  562 (580)
T COG4618         561 KV  562 (580)
T ss_pred             Hh
Confidence            43

>PRK13409 putative ATPase RIL; Provisional

Probab=99.86  E-value=4.2e-22  Score=198.50  Aligned_cols=147  Identities=18%  Similarity=0.135  Sum_probs=98.4

Q ss_pred             CceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEE-----------EecCCc-------
Q 023563           57 PPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVA-----------VIKSNK-------  116 (280)
Q Consensus        57 ~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~-----------~~~~~~-------  116 (280)
                      +++++||+ ..+|++++ .+++|+++||+||||||||||+ ++|+|+.. +...+.           +...+.       
T Consensus        78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLl-kiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~  155 (590)
T PRK13409         78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAV-KILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL  155 (590)
T ss_pred             CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHH-HHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence            38999987 46999999 9999999999999999999999 99999732 223332           111000       


Q ss_pred             -ccccccceeeeeccc---------------------ccccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          117 -DTRYGLDSIVTHDGV---------------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       117 -~~~~~~~~v~~~~~~---------------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                       .....+...++....                     ....+...++....++.              |++|+.+|++||
T Consensus       156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lll  235 (590)
T PRK13409        156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYF  235 (590)
T ss_pred             hccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence             000001111110000                     00011112222222111              568999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ||||++.+      .+.++|+++++  |+|||++|||++++.+          +||+|++|.+
T Consensus       236 LDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~----------~~D~v~vl~~  286 (590)
T PRK13409        236 FDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDY----------LADNVHIAYG  286 (590)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence            99997755      47788888865  9999999999999986          9999999976

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.86  E-value=7.4e-22  Score=197.94  Aligned_cols=155  Identities=21%  Similarity=0.192  Sum_probs=105.8

Q ss_pred             CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC----eeEEEecCCc---ccccccceeeeeccccc--
Q 023563           63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG----RNVAVIKSNK---DTRYGLDSIVTHDGVKL--  133 (280)
Q Consensus        63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g----~~i~~~~~~~---~~~~~~~~v~~~~~~~~--  133 (280)
                      +++.+|+|+|++|++||+++|+||||||||||+ ++|+|....+    .++.+-....   ..+..++++.|++....  
T Consensus        36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL-~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l  114 (617)
T TIGR00955        36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLM-NALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL  114 (617)
T ss_pred             CccccccCCEEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence            356799999999999999999999999999999 9999964321    2222111100   01112223322211000  


Q ss_pred             ----------------------------ccccccC-----------------chHHH-HH--HhhhhccCCCEEEEeCcc
Q 023563          134 ----------------------------PCCALTT-----------------LSSFR-QK--FGSDAYDQVDVIGIDEAQ  165 (280)
Q Consensus       134 ----------------------------~~~~~~~-----------------l~~~~-~~--~a~aL~~~p~lLlLDEP~  165 (280)
                                                  ..+...+                 ++.=. +|  .|++|+.+|++|+||||+
T Consensus       115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt  194 (617)
T TIGR00955       115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT  194 (617)
T ss_pred             cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence                                        0000001                 11111 11  167899999999999997


Q ss_pred             cHHH------HHHHHHHHHhhcCCEEEEEEechh-HhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          166 FFED------LYDFCREAADHDGKTVIVAGLDGD-YLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       166 ~~~~------i~~~l~~l~~~~g~tviivtHdl~-~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +.+|      +++.|++++++ |+|||+++|++. ++.+          +||++++|++ ++++.|+++++.
T Consensus       195 sgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~----------~~D~i~ll~~G~~v~~G~~~~~~  255 (617)
T TIGR00955       195 SGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFE----------LFDKIILMAEGRVAYLGSPDQAV  255 (617)
T ss_pred             cchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHH----------HhceEEEeeCCeEEEECCHHHHH
Confidence            7654      88999999875 999999999985 5554          8999999999 999999998774

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.86  E-value=6.1e-22  Score=204.89  Aligned_cols=164  Identities=19%  Similarity=0.224  Sum_probs=116.3

Q ss_pred             cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCee------------
Q 023563           52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRN------------  108 (280)
Q Consensus        52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~------------  108 (280)
                      -|+++||+|+|..   ..+|+|+||+|++|+.++|||||||||||.+ .+|..+.        ++|.+            
T Consensus       987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI-~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~ 1065 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVI-SLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQ 1065 (1228)
T ss_pred             EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHH-HHHHHhcCCCCCeEEECCcccccCCHHHHHHh
Confidence            4999999999965   4699999999999999999999999999999 8888762        23333            


Q ss_pred             EEEecCCccc-----cccccee---eeeccccccccccc----------------------Cch-HHHHHH--hhhhccC
Q 023563          109 VAVIKSNKDT-----RYGLDSI---VTHDGVKLPCCALT----------------------TLS-SFRQKF--GSDAYDQ  155 (280)
Q Consensus       109 i~~~~~~~~~-----~~~~~~v---~~~~~~~~~~~~~~----------------------~l~-~~~~~~--a~aL~~~  155 (280)
                      ++.+.|.+..     +.++.+-   +.... ..++....                      +++ ...+|.  |||++.+
T Consensus      1066 i~lVsQEP~LF~~TIrENI~YG~~~vs~~e-Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFNGTIRENIAYGSEEVSEEE-IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred             cceeccCchhhcccHHHHHhccCCCCCHHH-HHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence            3333333321     1111000   00000 00000000                      111 111222  7899999


Q ss_pred             CCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          156 VDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       156 p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      |++|||||.|+++|      +.+.|.++..  |+|.|+|.|.+..+.           -||.|+++++ ++++.|+.+++
T Consensus      1145 PkILLLDEATSALDseSErvVQeALd~a~~--gRT~IvIAHRLSTIq-----------naD~I~Vi~~G~VvE~GtH~~L 1211 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRAME--GRTTIVIAHRLSTIQ-----------NADVIAVLKNGKVVEQGTHDEL 1211 (1228)
T ss_pred             CCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEEEecchhhhh-----------cCCEEEEEECCEEEecccHHHH
Confidence            99999999999886      5666666653  999999999999997           6999999999 99999999999


Q ss_pred             ee
Q 023563          229 TL  230 (280)
Q Consensus       229 ~~  230 (280)
                      +.
T Consensus      1212 ~~ 1213 (1228)
T KOG0055|consen 1212 LA 1213 (1228)
T ss_pred             Hh
Confidence            83

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.86  E-value=5.9e-22  Score=187.85  Aligned_cols=164  Identities=20%  Similarity=0.213  Sum_probs=118.9

Q ss_pred             cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCccccccc
Q 023563           52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNKDTRYGL  122 (280)
Q Consensus        52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~~~~~~~  122 (280)
                      -|+++||++.|+ ++++|+||||++.+|+.++|+||||+||||++ |++-.+        .++|++|..+.+. ..|..+
T Consensus       537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTim-RlLfRffdv~sGsI~iDgqdIrnvt~~-SLRs~I  614 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIM-RLLFRFFDVNSGSITIDGQDIRNVTQS-SLRSSI  614 (790)
T ss_pred             eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHH-HHHHHHhhccCceEEEcCchHHHHHHH-HHHHhc
Confidence            599999999995 68999999999999999999999999999999 888765        3344443322221 112223


Q ss_pred             ceeeeeccccc------------cc----------------------------------ccccCchHHHHHHhhhhccCC
Q 023563          123 DSIVTHDGVKL------------PC----------------------------------CALTTLSSFRQKFGSDAYDQV  156 (280)
Q Consensus       123 ~~v~~~~~~~~------------~~----------------------------------~~~~~l~~~~~~~a~aL~~~p  156 (280)
                      +-+.|. ..++            +.                                  +.+.+=+..+-..||+++.+|
T Consensus       615 GVVPQD-tvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P  693 (790)
T KOG0056|consen  615 GVVPQD-TVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP  693 (790)
T ss_pred             CcccCc-ceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence            222221 0000            00                                  001111111222267899999


Q ss_pred             CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      .+++|||.|+++|      +...+.++++  |+|-|+|.|.+..+-           .||.|+++++ +|++.|..+|+.
T Consensus       694 ~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTiv-----------nAD~ILvi~~G~IvErG~HeeLl  760 (790)
T KOG0056|consen  694 SIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTIV-----------NADLILVISNGRIVERGRHEELL  760 (790)
T ss_pred             cEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehhee-----------cccEEEEEeCCeEeecCcHHHHH
Confidence            9999999988764      7788888886  899999999999886           5999999999 999999999998


Q ss_pred             ee
Q 023563          230 LR  231 (280)
Q Consensus       230 ~~  231 (280)
                      .|
T Consensus       761 ~r  762 (790)
T KOG0056|consen  761 KR  762 (790)
T ss_pred             hc
Confidence            44

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.85  E-value=3e-21  Score=170.78  Aligned_cols=63  Identities=24%  Similarity=0.281  Sum_probs=52.0

Q ss_pred             hhhhccCC--CEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563          149 GSDAYDQV--DVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL-----  215 (280)
Q Consensus       149 a~aL~~~p--~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L-----  215 (280)
                      +++|+.+|  ++||||||+..      ..+++.|++++++ |.|+|++|||++++.           +||++++|     
T Consensus       149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~-g~tii~itH~~~~~~-----------~~d~i~~l~~~~~  216 (226)
T cd03270         149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL-GNTVLVVEHDEDTIR-----------AADHVIDIGPGAG  216 (226)
T ss_pred             HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEEeCHHHHH-----------hCCEEEEeCCCcc
Confidence            67889898  59999999654      4578888888765 999999999999874           89999999     


Q ss_pred             -ec-eecccc
Q 023563          216 -TA-RCEFCG  223 (280)
Q Consensus       216 -~~-~i~~~g  223 (280)
                       ++ +++++|
T Consensus       217 ~~~G~iv~~g  226 (226)
T cd03270         217 VHGGEIVAQG  226 (226)
T ss_pred             ccCCEEEecC
Confidence             66 666554

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.85  E-value=2.2e-21  Score=210.43  Aligned_cols=163  Identities=20%  Similarity=0.222  Sum_probs=116.4

Q ss_pred             cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CC------eeEEEecCCcccc-
Q 023563           52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KG------RNVAVIKSNKDTR-  119 (280)
Q Consensus        52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g------~~i~~~~~~~~~~-  119 (280)
                      .|+++|++++|++   +++|+|+||+|++|+.++|+||+|||||||+ ++|.|+..  .|      +.++|++|++... 
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl-~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~  692 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLI-SAMLGELSHAETSSVVIRGSVAYVPQVSWIFN  692 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence            5999999999964   5799999999999999999999999999999 99999743  22      4578888876431 


Q ss_pred             ----cccc--eeeeeccccccccccc----------------------Cch-HHHHHH--hhhhccCCCEEEEeCcccHH
Q 023563          120 ----YGLD--SIVTHDGVKLPCCALT----------------------TLS-SFRQKF--GSDAYDQVDVIGIDEAQFFE  168 (280)
Q Consensus       120 ----~~~~--~v~~~~~~~~~~~~~~----------------------~l~-~~~~~~--a~aL~~~p~lLlLDEP~~~~  168 (280)
                          .++.  .-+. +......+...                      +++ ..++|.  |||++.+|+++|||||++..
T Consensus       693 gTIreNI~fg~~~~-~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaL  771 (1495)
T PLN03232        693 ATVRENILFGSDFE-SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL  771 (1495)
T ss_pred             ccHHHHhhcCCccC-HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence                1111  0000 00000000000                      122 122222  78999999999999998876


Q ss_pred             H------HHHH-HHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          169 D------LYDF-CREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       169 ~------i~~~-l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |      +++. +....  .|+|+|++||+++.+.           .||+|++|++ +++..|+.+++.
T Consensus       772 D~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~-----------~aD~Ii~L~~G~i~~~Gt~~eL~  827 (1495)
T PLN03232        772 DAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFLP-----------LMDRIILVSEGMIKEEGTFAELS  827 (1495)
T ss_pred             CHHHHHHHHHHHhhhhh--cCCEEEEEECChhhHH-----------hCCEEEEEeCCEEEEecCHHHHH
Confidence            5      3332 33332  3899999999999875           7999999999 999999988875

>PRK04296 thymidine kinase; Provisional

Probab=99.85  E-value=2.3e-20  Score=161.05  Aligned_cols=179  Identities=32%  Similarity=0.543  Sum_probs=133.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCCC
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVD  157 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~  157 (280)
                      |.++.+.||+|+||||++++.+..+...|+.+.++.+..+.+.....+..+.+............++...... ...+++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~d   80 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKID   80 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCC
Confidence            7899999999999999996666666667888887765433333333333333321111111222333332211 234789


Q ss_pred             EEEEeCcccH--HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecC-
Q 023563          158 VIGIDEAQFF--EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE-  234 (280)
Q Consensus       158 lLlLDEP~~~--~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~-  234 (280)
                      ++++||.++.  .++.++++.++.. |++||++.++.++..+.|+...+++++||.|..|+..|..||.++.+..|..+ 
T Consensus        81 vviIDEaq~l~~~~v~~l~~~l~~~-g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC~~Cg~~a~~~~r~~~~  159 (190)
T PRK04296         81 CVLIDEAQFLDKEQVVQLAEVLDDL-GIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAICVHCGRKATMNQRLIDG  159 (190)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHHc-CCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEEccccCCccceEEEEeCC
Confidence            9999999764  3477877777765 99999999999999999999999999999999999999999999999888773 


Q ss_pred             -----CCcEEEeCCccceeeeccchhccC
Q 023563          235 -----ETKTELIGGSDIYMPVCRQHYVSG  258 (280)
Q Consensus       235 -----~~~~~~~~~~~~~~~~~~~~~~~~  258 (280)
                           +.....+|+.+.|.++||+||...
T Consensus       160 ~~~~~~~~~~~ig~~e~Y~~~Cr~c~~~~  188 (190)
T PRK04296        160 GPAVYEGPQVLVGGNESYEAVCRKHYKEA  188 (190)
T ss_pred             CCccCCCCEEEECCcCcEEehhHHhhhcc
Confidence                 345667899999999999999643

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.85  E-value=1.5e-21  Score=168.88  Aligned_cols=159  Identities=16%  Similarity=0.181  Sum_probs=110.9

Q ss_pred             cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCccc
Q 023563           52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDT  118 (280)
Q Consensus        52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~  118 (280)
                      |+.++|+.+.|..     +.+|+++||+|++|+++.++|.||||||||+ +.++|..        ++|.++.-.+...+.
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTll-n~iaG~l~~t~G~I~Idg~dVtk~~~~~RA   79 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLL-NAIAGDLKPTSGQILIDGVDVTKKSVAKRA   79 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHH-HHhhCccccCCceEEECceecccCCHHHHh
Confidence            5678888888843     6799999999999999999999999999999 9999962        344455443333221


Q ss_pred             ccccceeeeeccc-ccccccccC----------------------chHHHHHH---------------------------
Q 023563          119 RYGLDSIVTHDGV-KLPCCALTT----------------------LSSFRQKF---------------------------  148 (280)
Q Consensus       119 ~~~~~~v~~~~~~-~~~~~~~~~----------------------l~~~~~~~---------------------------  148 (280)
                      . .+..++|.... ..+.+.+++                      .+.+.++.                           
T Consensus        80 ~-~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals  158 (263)
T COG1101          80 N-LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS  158 (263)
T ss_pred             h-HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH
Confidence            1 12334442110 011111100                      00111111                           


Q ss_pred             -hhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563          149 -GSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       149 -a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                       ..|.+..|++|+|||=|..      ..++++-.++.++.+.|.+||||+++.|..          |.+|.++|++ +|+
T Consensus       159 L~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~----------yG~RlImLh~G~Iv  228 (263)
T COG1101         159 LLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALD----------YGNRLIMLHSGKIV  228 (263)
T ss_pred             HHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHh----------hCCeEEEEeCCeEE
Confidence             2356789999999997554      458888899998889999999999999976          9999999999 887


Q ss_pred             cc
Q 023563          221 FC  222 (280)
Q Consensus       221 ~~  222 (280)
                      .+
T Consensus       229 lD  230 (263)
T COG1101         229 LD  230 (263)
T ss_pred             EE
Confidence            54

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.85  E-value=1.3e-21  Score=202.91  Aligned_cols=174  Identities=20%  Similarity=0.187  Sum_probs=127.6

Q ss_pred             ccEEEcCceEEeCCee-eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecC--------Ccccccc
Q 023563           51 SMVSPRPPLFSLQNRN-LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKS--------NKDTRYG  121 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~-vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~--------~~~~~~~  121 (280)
                      ..+.++|+++.|+.+. +++++|+.|++||+.|++|||||||||++ +++.|.......-.++..        ....+..
T Consensus       563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f-~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~  641 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTF-KMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ  641 (885)
T ss_pred             ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhH-HHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence            3689999999998877 99999999999999999999999999999 999997432221112211        1112334


Q ss_pred             cceeeeeccccccc---------------------------ccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          122 LDSIVTHDGVKLPC---------------------------CALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       122 ~~~v~~~~~~~~~~---------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      +++..|.+......                           +...++...+++.              |.|++.+|++++
T Consensus       642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~  721 (885)
T KOG0059|consen  642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVIL  721 (885)
T ss_pred             cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence            55555543321111                           0111222222211              457999999999


Q ss_pred             EeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563          161 IDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT  233 (280)
Q Consensus       161 LDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~  233 (280)
                      ||||++      +..+++++.++++. |+.+|++||.+++++.          +|||+.+|.+ ++.+.|++.++..+..
T Consensus       722 LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLTSHsMeE~Ea----------LCtR~aImv~G~l~ciGs~q~LKsrfG  790 (885)
T KOG0059|consen  722 LDEPSTGLDPKARRHLWDIIARLRKN-GKAIILTSHSMEEAEA----------LCTRTAIMVIGQLRCIGSPQELKSRYG  790 (885)
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHH----------HhhhhheeecCeeEEecChHHHHhhcC
Confidence            999954      55699999999985 7799999999999997          9999999999 9998999999986665


Q ss_pred             CCC
Q 023563          234 EET  236 (280)
Q Consensus       234 ~~~  236 (280)
                      ...
T Consensus       791 ~gy  793 (885)
T KOG0059|consen  791 SGY  793 (885)
T ss_pred             CcE
Confidence            544

>PLN03140 ABC transporter G family member; Provisional

Probab=99.85  E-value=4.8e-21  Score=206.44  Aligned_cols=163  Identities=15%  Similarity=0.129  Sum_probs=112.1

Q ss_pred             cEEEcCceEEeC-------------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC---eeEEEecCC
Q 023563           52 MVSPRPPLFSLQ-------------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG---RNVAVIKSN  115 (280)
Q Consensus        52 ~l~~~~ls~~y~-------------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g---~~i~~~~~~  115 (280)
                      .+..+||++.++             ++.+|+|||++|++|++++|+||||||||||+ ++|+|....|   .++.+-...
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL-~~LaG~~~~g~~~G~I~inG~~  945 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLM-DVLAGRKTGGYIEGDIRISGFP  945 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHH-HHHcCCCCCCcccceEEECCcc
Confidence            589999998863             34799999999999999999999999999999 9999974321   122211111


Q ss_pred             c---ccccccceeeeeccccc------------------------------ccccccCchHHHHH---------------
Q 023563          116 K---DTRYGLDSIVTHDGVKL------------------------------PCCALTTLSSFRQK---------------  147 (280)
Q Consensus       116 ~---~~~~~~~~v~~~~~~~~------------------------------~~~~~~~l~~~~~~---------------  147 (280)
                      .   ..+..++++.|.+....                              ..+...++.+..+.               
T Consensus       946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140        946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred             CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence            0   01112233333211100                              00111122222111               


Q ss_pred             ----HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhH-hhhccCCccccccccceEEEee
Q 023563          148 ----FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDY-LRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       148 ----~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~-~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                          .|++|+.+|++|+|||||+.+      .+++.|++++++ |+|||+++|+++. +.+          +||++++|+
T Consensus      1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~----------~~D~vllL~ 1094 (1470)
T PLN03140       1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFE----------AFDELLLMK 1094 (1470)
T ss_pred             HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHH----------hCCEEEEEc
Confidence                156899999999999997654      588999999876 9999999999983 544          899999998


Q ss_pred             c--eeccccCcc
Q 023563          217 A--RCEFCGKRA  226 (280)
Q Consensus       217 ~--~i~~~g~~~  226 (280)
                      +  ++++.|++.
T Consensus      1095 ~gG~~v~~G~~~ 1106 (1470)
T PLN03140       1095 RGGQVIYSGPLG 1106 (1470)
T ss_pred             CCCEEEEECCcc
Confidence            4  888999864

>PLN03130 ABC transporter C family member; Provisional

Probab=99.85  E-value=4.1e-21  Score=209.07  Aligned_cols=163  Identities=18%  Similarity=0.199  Sum_probs=116.5

Q ss_pred             cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-C-----eeEEEecCCcccc-
Q 023563           52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-G-----RNVAVIKSNKDTR-  119 (280)
Q Consensus        52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-g-----~~i~~~~~~~~~~-  119 (280)
                      .|+++|++++|+.   +++|+|+||+|++|+.++|+||+|||||||+ ++|.|...  . |     ..++|++|.+... 
T Consensus       614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl-~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfn  692 (1622)
T PLN03130        614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLI-SAMLGELPPRSDASVVIRGTVAYVPQVSWIFN  692 (1622)
T ss_pred             ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHH-HHHHHhhccCCCceEEEcCeEEEEcCccccCC
Confidence            5999999999964   5799999999999999999999999999999 99999743  2 2     3678888876431 


Q ss_pred             ----cccc--eeeeecccccccccc----------------------cCchH-HHHHH--hhhhccCCCEEEEeCcccHH
Q 023563          120 ----YGLD--SIVTHDGVKLPCCAL----------------------TTLSS-FRQKF--GSDAYDQVDVIGIDEAQFFE  168 (280)
Q Consensus       120 ----~~~~--~v~~~~~~~~~~~~~----------------------~~l~~-~~~~~--a~aL~~~p~lLlLDEP~~~~  168 (280)
                          .++.  .-+. +......+..                      .+++. .+.|.  |||++.+|+++|||||++..
T Consensus       693 gTIreNI~fg~~~d-~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL  771 (1622)
T PLN03130        693 ATVRDNILFGSPFD-PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL  771 (1622)
T ss_pred             CCHHHHHhCCCccc-HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence                1111  0000 0000000000                      01221 22222  78999999999999998876


Q ss_pred             H------HH-HHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          169 D------LY-DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       169 ~------i~-~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |      ++ +.+..+.  .|+|+|++||+++.+.           .||+|++|++ +++..|+.+++.
T Consensus       772 D~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~-----------~aD~Ii~L~~G~i~e~Gt~~eL~  827 (1622)
T PLN03130        772 DAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLS-----------QVDRIILVHEGMIKEEGTYEELS  827 (1622)
T ss_pred             CHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHH-----------hCCEEEEEeCCEEEEeCCHHHHH
Confidence            4      32 2333333  3899999999998876           6999999999 999999988875

>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]

Probab=99.84  E-value=4.4e-21  Score=163.74  Aligned_cols=183  Identities=36%  Similarity=0.547  Sum_probs=157.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC-
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ-  155 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~-  155 (280)
                      .|.++.+.||++|||||.|++.+-.+.+.|.++..+.+..+.|+..+.+..+.+...++.....-.++.+..+..--.. 
T Consensus         3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~~~~~   82 (201)
T COG1435           3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKPP   82 (201)
T ss_pred             eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHhcccCCC
Confidence            5789999999999999999888888999999999999999999999999998888777776666666666554322112 


Q ss_pred             CCEEEEeCcccHH-HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecC
Q 023563          156 VDVIGIDEAQFFE-DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE  234 (280)
Q Consensus       156 p~lLlLDEP~~~~-~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~  234 (280)
                      -+++++||.+|.. ++...+.+++++.|+.||+.+.|.++-.++|+++..||++||+|.-|+..|..||.++....|..+
T Consensus        83 ~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~GL~~DFrgepFe~s~~Lla~ADkv~kL~aIC~~Cg~~At~~~Rl~~  162 (201)
T COG1435          83 VDCVLIDEAQFFDEELVYVLNELADRLGIPVICYGLDTDFRGEPFEGSKYLLAIADKVTKLKAICNVCGRKATRTLRLIN  162 (201)
T ss_pred             cCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEeccccccccCCCccHHHHHHHHHHHHHHHHHHHHhCCcceEEEEecC
Confidence            4799999997654 688899999998899999999999999999999999999999999999999999999999988777


Q ss_pred             C------CcEEEeCCccceeeeccchhccCc
Q 023563          235 E------TKTELIGGSDIYMPVCRQHYVSGQ  259 (280)
Q Consensus       235 ~------~~~~~~~~~~~~~~~~~~~~~~~~  259 (280)
                      .      .....+|+.+.|.++||+||....
T Consensus       163 ~~~a~~~~~~i~IGg~e~Y~a~CR~h~~~~~  193 (201)
T COG1435         163 GGPAVYEGPQILIGGNESYEARCRKHHKEPG  193 (201)
T ss_pred             CCCCccCCCeEEECCCcceeehhhhhhhccc
Confidence            4      346778999999999999996543

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.84  E-value=6e-21  Score=207.30  Aligned_cols=166  Identities=17%  Similarity=0.205  Sum_probs=116.7

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-----CeeEEEecCCccccc-c
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-----GRNVAVIKSNKDTRY-G  121 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-----g~~i~~~~~~~~~~~-~  121 (280)
                      .|+++|++++|++  +++|+|+||+|++|++++|+||||||||||+ ++|.|+..  .     +..++|++|++.... .
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl-~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~T  714 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLL-SALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDS  714 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCccCCcEEEECCEEEEEcCCccccCCc
Confidence            6999999999974  5799999999999999999999999999999 99999732  1     236788888754311 1


Q ss_pred             ccee--eee---ccccccccc----------------------ccCch-HHHHHH--hhhhccCCCEEEEeCcccHHH--
Q 023563          122 LDSI--VTH---DGVKLPCCA----------------------LTTLS-SFRQKF--GSDAYDQVDVIGIDEAQFFED--  169 (280)
Q Consensus       122 ~~~v--~~~---~~~~~~~~~----------------------~~~l~-~~~~~~--a~aL~~~p~lLlLDEP~~~~~--  169 (280)
                      +...  +..   .........                      -.+++ ..++|.  |||++.+|+++|||||++..|  
T Consensus       715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~  794 (1522)
T TIGR00957       715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH  794 (1522)
T ss_pred             HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence            1000  000   000000000                      00121 112222  789999999999999987654  


Q ss_pred             ----HHHHHHHHHh-hcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          170 ----LYDFCREAAD-HDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       170 ----i~~~l~~l~~-~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                          +++.+.+... ..|+|+|++||+++.+.           .||+|++|++ +++..|+++++.
T Consensus       795 ~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~-----------~~D~ii~l~~G~i~~~g~~~~l~  849 (1522)
T TIGR00957       795 VGKHIFEHVIGPEGVLKNKTRILVTHGISYLP-----------QVDVIIVMSGGKISEMGSYQELL  849 (1522)
T ss_pred             HHHHHHHHHhhhhhhhcCCEEEEEeCChhhhh-----------hCCEEEEecCCeEEeeCCHHHHH
Confidence                5555543211 13899999999999886           6999999999 999999988775

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.83  E-value=2.6e-21  Score=180.04  Aligned_cols=73  Identities=10%  Similarity=0.037  Sum_probs=64.1

Q ss_pred             hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      |++|+.+|++||||||++.+      .+++.|+++.++.|+|+|++|||++++.+          +||+|++|++ +++.
T Consensus       112 araL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~----------~~d~i~vl~~G~i~~  181 (325)
T TIGR01187       112 ARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMT----------MSDRIAIMRKGKIAQ  181 (325)
T ss_pred             HHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEE
Confidence            67899999999999996654      58888888887669999999999999876          9999999999 9999


Q ss_pred             ccCcceeeee
Q 023563          222 CGKRAFFTLR  231 (280)
Q Consensus       222 ~g~~~~~~~~  231 (280)
                      .|+++++..+
T Consensus       182 ~g~~~~~~~~  191 (325)
T TIGR01187       182 IGTPEEIYEE  191 (325)
T ss_pred             EcCHHHHHhC
Confidence            9999888643

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=2.6e-21  Score=184.40  Aligned_cols=167  Identities=16%  Similarity=0.186  Sum_probs=113.2

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC---------eeEEEecCCccccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG---------RNVAVIKSNKDTRYGL  122 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g---------~~i~~~~~~~~~~~~~  122 (280)
                      =|.+.+.+..||++.+|++-++++..|..|||+|+||+|||||| |+|+.-.+.+         ..+....+........
T Consensus        80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLL-Raia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~  158 (582)
T KOG0062|consen   80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLL-RAIANGQVSGFHVEQEVRGDDTEALQSVLESDTER  158 (582)
T ss_pred             ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHH-HHHHhcCcCccCchhheeccchHHHhhhhhccHHH
Confidence            38899999999999999999999999999999999999999999 9887632211         1111111100000000


Q ss_pred             ceeeeeccc-------------------------ccccccccCchHHHHHHhhhhccCCCEEEEeCcccHHHHH--HHHH
Q 023563          123 DSIVTHDGV-------------------------KLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLY--DFCR  175 (280)
Q Consensus       123 ~~v~~~~~~-------------------------~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~--~~l~  175 (280)
                      ..++.++..                         ..+.-.+.+=+.++-..||||..+||+|||||||+.+|+.  ..|.
T Consensus       159 ~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe  238 (582)
T KOG0062|consen  159 LDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLE  238 (582)
T ss_pred             HHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHH
Confidence            011111100                         0000011122233333378999999999999999999974  4566


Q ss_pred             HHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee-ccccCcceee
Q 023563          176 EAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC-EFCGKRAFFT  229 (280)
Q Consensus       176 ~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i-~~~g~~~~~~  229 (280)
                      ......+.|+|+||||-.+...          +|..|+.+++ ++ .+.|+.+++.
T Consensus       239 ~yL~t~~~T~liVSHDr~FLn~----------V~tdIIH~~~~kL~~YkGN~~~Fv  284 (582)
T KOG0062|consen  239 NYLQTWKITSLIVSHDRNFLNT----------VCTDIIHLENLKLDYYKGNYSQFV  284 (582)
T ss_pred             HHHhhCCceEEEEeccHHHHHH----------HHHHHHHHhhhhhhhhcCcHHHHH
Confidence            6666668999999999999997          9999999998 54 3457666654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.82  E-value=3.1e-20  Score=201.41  Aligned_cols=161  Identities=17%  Similarity=0.153  Sum_probs=109.3

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-----CeeEEEecCCccccc-ccce
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-----GRNVAVIKSNKDTRY-GLDS  124 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-----g~~i~~~~~~~~~~~-~~~~  124 (280)
                      ++++|+++.  .+.+|+|+||+|++|++++|+||||||||||+ ++|.|+..  .     ...++|++|.+.... .+..
T Consensus       429 ~~~~~~s~~--~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl-~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~e  505 (1490)
T TIGR01271       429 LFFSNFSLY--VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLL-MMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKD  505 (1490)
T ss_pred             ccccccccc--cCcceeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHH
Confidence            455555543  35689999999999999999999999999999 99999732  1     225788888754311 1100


Q ss_pred             e--ee--ecc-cccccccc----------------------cCch-HHHHHH--hhhhccCCCEEEEeCcccHHH-----
Q 023563          125 I--VT--HDG-VKLPCCAL----------------------TTLS-SFRQKF--GSDAYDQVDVIGIDEAQFFED-----  169 (280)
Q Consensus       125 v--~~--~~~-~~~~~~~~----------------------~~l~-~~~~~~--a~aL~~~p~lLlLDEP~~~~~-----  169 (280)
                      .  +.  ... .....+..                      .+++ ....|.  |||++.+|+++|||||+++.|     
T Consensus       506 NI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~  585 (1490)
T TIGR01271       506 NIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK  585 (1490)
T ss_pred             HHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            0  00  000 00000000                      0111 111222  789999999999999977654     


Q ss_pred             -HHHH-HHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          170 -LYDF-CREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       170 -i~~~-l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                       +++. +.++. + |+|+|++||+++.+.           .||+|++|++ +++..|+++++.
T Consensus       586 ~i~~~~l~~~~-~-~~tvilvtH~~~~~~-----------~ad~ii~l~~g~i~~~g~~~~l~  635 (1490)
T TIGR01271       586 EIFESCLCKLM-S-NKTRILVTSKLEHLK-----------KADKILLLHEGVCYFYGTFSELQ  635 (1490)
T ss_pred             HHHHHHHHHHh-c-CCeEEEEeCChHHHH-----------hCCEEEEEECCEEEEEcCHHHHH
Confidence             5543 45554 3 899999999999885           6999999999 999999987775

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.82  E-value=3.4e-20  Score=199.79  Aligned_cols=154  Identities=17%  Similarity=0.043  Sum_probs=105.9

Q ss_pred             CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-----hCCeeEEEecCCc-----ccccccceeeeeccccc
Q 023563           64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-----QKGRNVAVIKSNK-----DTRYGLDSIVTHDGVKL  133 (280)
Q Consensus        64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-----~~g~~i~~~~~~~-----~~~~~~~~v~~~~~~~~  133 (280)
                      .+.+|+|+|+++++||+++|+||||||||||+ ++|+|..     .....|.+-....     ..+..+.++.|.+....
T Consensus        73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLL-k~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~  151 (1394)
T TIGR00956        73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLL-KTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP  151 (1394)
T ss_pred             cceeeeCCEEEEECCEEEEEECCCCCCHHHHH-HHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence            46799999999999999999999999999999 9999963     1222332221110     01111233333211000


Q ss_pred             -----------------------------------ccccccCchHHHHH-------------------HhhhhccCCCEE
Q 023563          134 -----------------------------------PCCALTTLSSFRQK-------------------FGSDAYDQVDVI  159 (280)
Q Consensus       134 -----------------------------------~~~~~~~l~~~~~~-------------------~a~aL~~~p~lL  159 (280)
                                                         ..+...++.+.++.                   .|++|+.+|++|
T Consensus       152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl  231 (1394)
T TIGR00956       152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ  231 (1394)
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence                                               00111122221111                   156899999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEech-hHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDG-DYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl-~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      +|||||+.+      ++++.|++++++.|+|+|+++|+. +++.+          ++|+|++|++ ++++.|+++++
T Consensus       232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~----------l~D~v~~L~~G~iv~~G~~~~~  298 (1394)
T TIGR00956       232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYE----------LFDKVIVLYEGYQIYFGPADKA  298 (1394)
T ss_pred             EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHH----------hhceEEEEeCCeEEEECCHHHH
Confidence            999997654      588999999876699999999996 56655          8999999999 99999998766

>PLN03140 ABC transporter G family member; Provisional

Probab=99.81  E-value=4.2e-20  Score=199.24  Aligned_cols=71  Identities=15%  Similarity=0.127  Sum_probs=60.8

Q ss_pred             hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEech-hHhhhccCCccccccccceEEEeec-eec
Q 023563          149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDG-DYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl-~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                      |++|+.+|++|+||||++.+      ++++.|++++++.|+|+|+++|+. +++.+          ++|+|++|++ +++
T Consensus       348 a~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~----------lfD~vilL~~G~iv  417 (1470)
T PLN03140        348 GEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFD----------LFDDIILLSEGQIV  417 (1470)
T ss_pred             hhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHH----------HhheEEEeeCceEE
Confidence            55799999999999997655      488999999876699999999986 46654          9999999999 999


Q ss_pred             cccCcceee
Q 023563          221 FCGKRAFFT  229 (280)
Q Consensus       221 ~~g~~~~~~  229 (280)
                      +.|+++++.
T Consensus       418 y~G~~~~~~  426 (1470)
T PLN03140        418 YQGPRDHIL  426 (1470)
T ss_pred             EeCCHHHHH
Confidence            999987764

>PTZ00243 ABC transporter; Provisional

Probab=99.81  E-value=5.6e-20  Score=199.81  Aligned_cols=156  Identities=24%  Similarity=0.301  Sum_probs=106.1

Q ss_pred             EEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-----CeeEEEecCCccccc-cccee--eeec
Q 023563           60 FSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-----GRNVAVIKSNKDTRY-GLDSI--VTHD  129 (280)
Q Consensus        60 ~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-----g~~i~~~~~~~~~~~-~~~~v--~~~~  129 (280)
                      +.++++.+|+|+||+|++|++++|+||||||||||+ ++|.|+..  .     .+.++|++|.+.... .+...  +...
T Consensus       668 ~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL-~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~  746 (1560)
T PTZ00243        668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLL-QSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDE  746 (1560)
T ss_pred             cccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCCh
Confidence            444667899999999999999999999999999999 99999732  1     246788888754311 01000  0000


Q ss_pred             -c--ccccccccc----------------------Cch-HHHHHH--hhhhccCCCEEEEeCcccHHH------HHHH-H
Q 023563          130 -G--VKLPCCALT----------------------TLS-SFRQKF--GSDAYDQVDVIGIDEAQFFED------LYDF-C  174 (280)
Q Consensus       130 -~--~~~~~~~~~----------------------~l~-~~~~~~--a~aL~~~p~lLlLDEP~~~~~------i~~~-l  174 (280)
                       .  .....+...                      +++ ....+.  |||++.+|+++|||||++..|      +++. +
T Consensus       747 ~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~  826 (1560)
T PTZ00243        747 EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF  826 (1560)
T ss_pred             hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence             0  000000000                      111 111111  689999999999999987664      3332 2


Q ss_pred             HHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          175 REAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       175 ~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ... . .|+|+|++||+++.+.           .||+|++|++ ++++.|+++++.
T Consensus       827 ~~~-~-~~~TvIlvTH~~~~~~-----------~ad~ii~l~~G~i~~~G~~~~l~  869 (1560)
T PTZ00243        827 LGA-L-AGKTRVLATHQVHVVP-----------RADYVVALGDGRVEFSGSSADFM  869 (1560)
T ss_pred             HHh-h-CCCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEecCHHHHH
Confidence            222 2 3899999999999885           7999999999 999999988875

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.81  E-value=1e-19  Score=182.00  Aligned_cols=166  Identities=20%  Similarity=0.240  Sum_probs=114.0

Q ss_pred             cEEEcCceEEeC-----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC----eeEEEecCCcc---cc
Q 023563           52 MVSPRPPLFSLQ-----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG----RNVAVIKSNKD---TR  119 (280)
Q Consensus        52 ~l~~~~ls~~y~-----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g----~~i~~~~~~~~---~~  119 (280)
                      -+.+++++....     .+.+|+|||.++++||+.||+||+|||||||+ .+++|-...|    ..+.+-.....   .+
T Consensus        25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL-~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~  103 (613)
T KOG0061|consen   25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLL-NALAGRLNGGLKLSGEILLNGRPRDSRSFR  103 (613)
T ss_pred             eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHH-HHHhccccCCCcceEEEEECCccCchhhhh
Confidence            367777776663     36799999999999999999999999999999 9999864322    12221110110   11


Q ss_pred             cccceeeeeccccccccc-------------------------------ccCchHHH-----------------HH--Hh
Q 023563          120 YGLDSIVTHDGVKLPCCA-------------------------------LTTLSSFR-----------------QK--FG  149 (280)
Q Consensus       120 ~~~~~v~~~~~~~~~~~~-------------------------------~~~l~~~~-----------------~~--~a  149 (280)
                      ...+++.| +....+.++                               ..++.+.+                 +|  .|
T Consensus       104 ~~s~yV~Q-dD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia  182 (613)
T KOG0061|consen  104 KISGYVQQ-DDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIA  182 (613)
T ss_pred             heeEEEcc-cccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHH
Confidence            11223322 221111110                               00111111                 11  14


Q ss_pred             hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      .+++.+|.+|++||||+.+      ++++.|++++++ |+|||++-|.+..         +++.+-|++++|.. ++++.
T Consensus       183 ~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss---------~lf~lFD~l~lLs~G~~vy~  252 (613)
T KOG0061|consen  183 LELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSS---------ELFELFDKLLLLSEGEVVYS  252 (613)
T ss_pred             HHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcH---------HHHHHHhHhhhhcCCcEEEe
Confidence            5799999999999998765      489999999998 9999999999873         34568999999999 99999


Q ss_pred             cCcceee
Q 023563          223 GKRAFFT  229 (280)
Q Consensus       223 g~~~~~~  229 (280)
                      |+++++.
T Consensus       253 G~~~~~~  259 (613)
T KOG0061|consen  253 GSPRELL  259 (613)
T ss_pred             cCHHHHH
Confidence            9988664

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.79  E-value=2e-19  Score=172.47  Aligned_cols=167  Identities=16%  Similarity=0.238  Sum_probs=112.7

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---CeeEEEecCCccc--ccccceee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---GRNVAVIKSNKDT--RYGLDSIV  126 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---g~~i~~~~~~~~~--~~~~~~v~  126 (280)
                      -++++|+++.|.++.+++|+.|++.+|+.|||+|||||||||+| ++|.|-...   .-++..+.+....  ...+..++
T Consensus        75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L-~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~  153 (614)
T KOG0927|consen   75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFL-RAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVV  153 (614)
T ss_pred             cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHH-HHHhcCCCCCCcccchhhhcccCCCchHHHHHHHh
Confidence            48999999999999999999999999999999999999999999 999884221   1111111111100  00011111


Q ss_pred             e------------------e-cccc-------ccccc-------------------------------ccCchHHHHHHh
Q 023563          127 T------------------H-DGVK-------LPCCA-------------------------------LTTLSSFRQKFG  149 (280)
Q Consensus       127 ~------------------~-~~~~-------~~~~~-------------------------------~~~l~~~~~~~a  149 (280)
                      .                  . +...       ...+.                               +.+=+..+-..|
T Consensus       154 ~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLA  233 (614)
T KOG0927|consen  154 METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALA  233 (614)
T ss_pred             hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHH
Confidence            0                  0 0000       00000                               000111111226


Q ss_pred             hhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCC-EEEEEEechhHhhhccCCccccccccceEEEeec-e-eccccC
Q 023563          150 SDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGK-TVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R-CEFCGK  224 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~-tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~-i~~~g~  224 (280)
                      ++|..+|++|||||||+.+|+  ...|.+...+... ++|+++|+-+++..          +|.+|+.|.. + +.+.|+
T Consensus       234 r~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~----------vCT~Ii~l~~kkl~~y~Gn  303 (614)
T KOG0927|consen  234 RALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNG----------VCTNIIHLDNKKLIYYEGN  303 (614)
T ss_pred             HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhh----------HhhhhheecccceeeecCC
Confidence            789999999999999999874  4566666655566 89999999999997          9999999998 5 677788


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      .+...
T Consensus       304 ydqy~  308 (614)
T KOG0927|consen  304 YDQYV  308 (614)
T ss_pred             HHHHh
Confidence            76654

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.78  E-value=1e-18  Score=153.07  Aligned_cols=149  Identities=13%  Similarity=0.092  Sum_probs=90.7

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEee-CceEEEEEcCCCCcHHHHHHHHHhcchh---CC-eeE----EEecCCccccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSP-SGEIHVIVGPMFAGKTTTLLRRIQAETQ---KG-RNV----AVIKSNKDTRYGL  122 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~-~Gei~~liGpNGsGKSTLl~~~l~gl~~---~g-~~i----~~~~~~~~~~~~~  122 (280)
                      .|+++|.. +|.+.   .+|+|+.. +|++++|+||||||||||+ ++|.+..+   .+ ...    ..+... .....+
T Consensus         5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll-~~i~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~v   78 (213)
T cd03279           5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTIL-DAITYALYGKTPRYGRQENLRSVFAPG-EDTAEV   78 (213)
T ss_pred             EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHH-HHheeeEecCccccccchhHHHHhcCC-CccEEE
Confidence            47889988 76554   45667654 5899999999999999999 88885321   00 000    000000 001111


Q ss_pred             ceeeeeccccc--------c--------cccccCchHHHHH--------------Hhhhhcc----------CCCEEEEe
Q 023563          123 DSIVTHDGVKL--------P--------CCALTTLSSFRQK--------------FGSDAYD----------QVDVIGID  162 (280)
Q Consensus       123 ~~v~~~~~~~~--------~--------~~~~~~l~~~~~~--------------~a~aL~~----------~p~lLlLD  162 (280)
                      ...++......        .        .+...++..+.++              .+++++.          +|++||||
T Consensus        79 ~~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllD  158 (213)
T cd03279          79 SFTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFID  158 (213)
T ss_pred             EEEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEe
Confidence            22222111100        0        0000111122111              1556763          67999999


Q ss_pred             CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ||++..      .+.+.+.+++++ |.|+|++||+++++.+          +||+++++++
T Consensus       159 Ep~~~lD~~~~~~~~~~l~~~~~~-~~tii~itH~~~~~~~----------~~~~i~~~~~  208 (213)
T cd03279         159 EGFGTLDPEALEAVATALELIRTE-NRMVGVISHVEELKER----------IPQRLEVIKT  208 (213)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECchHHHHh----------hCcEEEEEec
Confidence            996543      477888888765 9999999999999986          8999999987

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.78  E-value=8.2e-19  Score=151.65  Aligned_cols=170  Identities=12%  Similarity=0.151  Sum_probs=116.5

Q ss_pred             ccEEEcCceEEe----CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEE------------EecC
Q 023563           51 SMVSPRPPLFSL----QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVA------------VIKS  114 (280)
Q Consensus        51 ~~l~~~~ls~~y----~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~------------~~~~  114 (280)
                      |++.++|++..+    |...+++++|+++.+||+-||+|.+|||||-.. +.|.|...++-.++            .+.+
T Consensus         2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiA-K~Ic~v~kdnW~vTADR~Rf~~idLL~L~P   80 (330)
T COG4170           2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIA-KAICGVNKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHH-HHHhcccccceEEEhhhcccccchhhcCCh
Confidence            478899999888    346799999999999999999999999999998 99999732221111            1111


Q ss_pred             Cccc---ccccceeeeecccc--------------ccccc---------------------ccCchH---HHHHH-----
Q 023563          115 NKDT---RYGLDSIVTHDGVK--------------LPCCA---------------------LTTLSS---FRQKF-----  148 (280)
Q Consensus       115 ~~~~---~~~~~~v~~~~~~~--------------~~~~~---------------------~~~l~~---~~~~~-----  148 (280)
                      ..+.   ...+..+||.....              .+.+.                     .+++.+   +...+     
T Consensus        81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT  160 (330)
T COG4170          81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT  160 (330)
T ss_pred             HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence            1100   00112222211000              00111                     111111   11111     


Q ss_pred             ---------hhhhccCCCEEEEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEE
Q 023563          149 ---------GSDAYDQVDVIGIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVT  213 (280)
Q Consensus       149 ---------a~aL~~~p~lLlLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~  213 (280)
                               |.|++.+|++||.||||+      +.+++.+|.++.+..|.||++++||+..+.+          +||+|-
T Consensus       161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~----------W~d~i~  230 (330)
T COG4170         161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQ----------WADKIN  230 (330)
T ss_pred             cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHH----------HhhheE
Confidence                     457899999999999954      5578999999998789999999999999997          999999


Q ss_pred             Eeec-eeccccCcceeeee
Q 023563          214 KLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       214 ~L~~-~i~~~g~~~~~~~~  231 (280)
                      +|.- .-+..++.+++...
T Consensus       231 VlYCGQ~~ESa~~e~l~~~  249 (330)
T COG4170         231 VLYCGQTVESAPSEELVTM  249 (330)
T ss_pred             EEEecccccccchhHHhcC
Confidence            9987 66777777777644

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.78  E-value=1.1e-19  Score=153.06  Aligned_cols=173  Identities=20%  Similarity=0.144  Sum_probs=114.9

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccc-------ccc---
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDT-------RYG---  121 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~-------~~~---  121 (280)
                      +++++||...    +-|-.+|.++..||++-+|||||||||||+ ..++|+......|-+-......       |..   
T Consensus         3 l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLL-A~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYL   77 (248)
T COG4138           3 LMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLL-ARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYL   77 (248)
T ss_pred             eeeecccccc----ccccccccccccceEEEEECCCCccHHHHH-HHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHH
Confidence            6788887653    235678999999999999999999999999 8899986654444433222110       000   


Q ss_pred             --------cceeeeeccccccc----------ccccCchHHHHHH-----hh----------------hhccCCCEEEEe
Q 023563          122 --------LDSIVTHDGVKLPC----------CALTTLSSFRQKF-----GS----------------DAYDQVDVIGID  162 (280)
Q Consensus       122 --------~~~v~~~~~~~~~~----------~~~~~l~~~~~~~-----a~----------------aL~~~p~lLlLD  162 (280)
                              ..-++++-.+..+.          ....++.+.+.+.     |.                .+-...++||+|
T Consensus        78 sQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD  157 (248)
T COG4138          78 SQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD  157 (248)
T ss_pred             hhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEec
Confidence                    00111111111111          0111222222221     10                122356799999


Q ss_pred             CcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeecCC
Q 023563          163 EAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKTEE  235 (280)
Q Consensus       163 EP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~~~  235 (280)
                      ||.+.+|      +..+|.+++.. |.+|||++||++.-.+          .||++++|+. +++.+|..++++   +.+
T Consensus       158 EP~~~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNhTLr----------hA~~~wLL~rG~l~~~G~~~eVl---t~~  223 (248)
T COG4138         158 EPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLR----------HAHRAWLLKRGKLLASGRREEVL---TPP  223 (248)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHhC-CcEEEEeccchhhHHH----------HHHHHHHHhcCeEEeecchhhhc---ChH
Confidence            9976654      45677888886 9999999999998866          9999999999 999999999999   777


Q ss_pred             CcEEEeCC
Q 023563          236 TKTELIGG  243 (280)
Q Consensus       236 ~~~~~~~~  243 (280)
                      .+...||.
T Consensus       224 vL~q~fg~  231 (248)
T COG4138         224 VLAQAYGM  231 (248)
T ss_pred             HHHHHhcc
Confidence            66666664

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.78  E-value=5.1e-19  Score=186.65  Aligned_cols=164  Identities=18%  Similarity=0.119  Sum_probs=115.3

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCee------------E
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRN------------V  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~------------i  109 (280)
                      -|+++|++.+|..  ..||+||||+|++||.+||+|..|||||||+ ..+-.+        .++|.+            +
T Consensus      1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~-~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLI-LALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred             eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHH-HHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence            5999999999965  4799999999999999999999999999999 666554        234443            3


Q ss_pred             EEecCCccc-----ccccceeeee-cccccccccccCchHHH-------------------------HHHhhhhccCCCE
Q 023563          110 AVIKSNKDT-----RYGLDSIVTH-DGVKLPCCALTTLSSFR-------------------------QKFGSDAYDQVDV  158 (280)
Q Consensus       110 ~~~~~~~~~-----~~~~~~v~~~-~~~~~~~~~~~~l~~~~-------------------------~~~a~aL~~~p~l  158 (280)
                      +.+||++-.     |+++.-.-++ +.....+++...+.+.-                         -..||||+.+.+|
T Consensus      1217 sIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred             eeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCE
Confidence            455555422     2221111110 00011111111111111                         1118899999999


Q ss_pred             EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |+|||+|+.-|      +.+.|++.-+  ++|||.+.|.++.+.           -||||+||++ ++++.|+|.+++
T Consensus      1297 LvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVm-----------d~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1297 LVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVM-----------DSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred             EEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhh-----------hcCeEEEeeCCeEeecCChHHHH
Confidence            99999987643      4555555554  899999999999987           4999999999 999999999998

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.77  E-value=1.5e-18  Score=150.55  Aligned_cols=134  Identities=16%  Similarity=0.146  Sum_probs=82.2

Q ss_pred             EeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-------Ce---eEEEecCCc---ccccccceeeeecccccc-
Q 023563           69 SEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-------GR---NVAVIKSNK---DTRYGLDSIVTHDGVKLP-  134 (280)
Q Consensus        69 ~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-------g~---~i~~~~~~~---~~~~~~~~v~~~~~~~~~-  134 (280)
                      ++++|++++| +++|+||||||||||+ ++|.|+...       +.   ++.+..+..   .....++.++|.....+. 
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll-~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~   91 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNII-DAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI   91 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHH-HHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE
Confidence            5688999999 9999999999999999 888876311       11   111111110   011223344443222110 


Q ss_pred             --------cccccC--------ch-HHHHHH--hhhhc----cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEE
Q 023563          135 --------CCALTT--------LS-SFRQKF--GSDAY----DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTV  185 (280)
Q Consensus       135 --------~~~~~~--------l~-~~~~~~--a~aL~----~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tv  185 (280)
                              .+...+        ++ ....+.  +++++    .+|+++|||||++..      .+++.|+++++  +.||
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~ti  169 (197)
T cd03278          92 ISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQF  169 (197)
T ss_pred             EehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEE
Confidence                    000000        00 001111  44554    467999999996543      47778888754  6899


Q ss_pred             EEEEechhHhhhccCCccccccccceEEEeec
Q 023563          186 IVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       186 iivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      |++||+++++.           +||+++.+..
T Consensus       170 IiitH~~~~~~-----------~~d~v~~~~~  190 (197)
T cd03278         170 IVITHRKGTME-----------AADRLYGVTM  190 (197)
T ss_pred             EEEECCHHHHh-----------hcceEEEEEe
Confidence            99999999864           8999999876

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.77  E-value=1.9e-19  Score=172.67  Aligned_cols=155  Identities=18%  Similarity=0.191  Sum_probs=107.2

Q ss_pred             CccEEEcCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---------CeeEEEecCCcccc
Q 023563           50 HSMVSPRPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---------GRNVAVIKSNKDTR  119 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---------g~~i~~~~~~~~~~  119 (280)
                      .|++.++|++|+|.+. .++++++|-|..++.+++|||||+|||||| +++.|....         +..+.++.|+....
T Consensus       387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLl-Kl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~  465 (614)
T KOG0927|consen  387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLL-KLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQ  465 (614)
T ss_pred             CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhH-HHHhhccccccccccccccccchhhhhhhHhh
Confidence            4689999999999765 689999999999999999999999999999 999886321         11222333332211


Q ss_pred             cccceeeeeccccccc----ccccCchHHHHHH------------------------hhhhccCCCEEEEeCcccHHHH-
Q 023563          120 YGLDSIVTHDGVKLPC----CALTTLSSFRQKF------------------------GSDAYDQVDVIGIDEAQFFEDL-  170 (280)
Q Consensus       120 ~~~~~v~~~~~~~~~~----~~~~~l~~~~~~~------------------------a~aL~~~p~lLlLDEP~~~~~i-  170 (280)
                      ........  ....+.    .....+..+..++                        ++.++.+|.+|||||||+..|+ 
T Consensus       466 ldl~~s~l--e~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~  543 (614)
T KOG0927|consen  466 LDLDKSSL--EFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIE  543 (614)
T ss_pred             cCcchhHH--HHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCch
Confidence            11100000  000000    0011111111222                        5567899999999999999874 


Q ss_pred             -HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          171 -YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       171 -~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                       ++.+.+..++...+||++|||.-++.+          ++++|.+..+
T Consensus       544 tid~laeaiNe~~Ggvv~vSHDfrlI~q----------VaeEi~~c~~  581 (614)
T KOG0927|consen  544 TIDALAEAINEFPGGVVLVSHDFRLISQ----------VAEEIWVCEN  581 (614)
T ss_pred             hHHHHHHHHhccCCceeeeechhhHHHH----------HHHHhHhhcc
Confidence             667777777777899999999999998          9999999888

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.77  E-value=2.8e-18  Score=143.90  Aligned_cols=154  Identities=19%  Similarity=0.190  Sum_probs=104.1

Q ss_pred             cEEEcCceEEe-----CC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEecCCc-------
Q 023563           52 MVSPRPPLFSL-----QN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVIKSNK-------  116 (280)
Q Consensus        52 ~l~~~~ls~~y-----~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~~~~~-------  116 (280)
                      .|.++|++|+|     ++  -++++++||+|+.||+++|-||||||||||+ +++.+ +..+...|-.-.+..       
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStll-r~LYaNY~~d~G~I~v~H~g~~vdl~~a   82 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLL-RSLYANYLPDEGQILVRHEGEWVDLVTA   82 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHH-HHHHhccCCCCceEEEEeCcchhhhhcc
Confidence            58999999999     33  4699999999999999999999999999999 88776 444444443222211       


Q ss_pred             --c-----cccccceeeeecccc----------ccc-----------------ccccCch----HH-----------HHH
Q 023563          117 --D-----TRYGLDSIVTHDGVK----------LPC-----------------CALTTLS----SF-----------RQK  147 (280)
Q Consensus       117 --~-----~~~~~~~v~~~~~~~----------~~~-----------------~~~~~l~----~~-----------~~~  147 (280)
                        .     .+..++++.|.-...          .+.                 +...++-    .+           +--
T Consensus        83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN  162 (235)
T COG4778          83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN  162 (235)
T ss_pred             ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence              1     022344443311100          000                 0011110    00           000


Q ss_pred             HhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          148 FGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       148 ~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      .+|.++.+-++|||||||..      .-+.++|.+.... |.++|=+-||-+.-..          +|||++.+..
T Consensus       163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~-GaAlvGIFHDeevre~----------vadR~~~~~~  227 (235)
T COG4778         163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKAR-GAALVGIFHDEEVREA----------VADRLLDVSA  227 (235)
T ss_pred             hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhc-CceEEEeeccHHHHHH----------Hhhheeeccc
Confidence            15679999999999999654      4488999888775 9999999999887665          9999998865

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=2.3e-18  Score=161.19  Aligned_cols=164  Identities=20%  Similarity=0.161  Sum_probs=116.0

Q ss_pred             cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCcc------cccccc
Q 023563           52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKD------TRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~------~~~~~~  123 (280)
                      .+.+++|++.|+ .+++|+++||+++.|+.++++||+|+||||++ +++-.+. .+...|....|+.+      .|..++
T Consensus       262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~-rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg  340 (497)
T COG5265         262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTIL-RLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG  340 (497)
T ss_pred             eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHH-HHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC
Confidence            478999999995 57899999999999999999999999999999 8887652 22333333333221      122223


Q ss_pred             eeeeeccccc-----------cc----------------------------------ccccCchHHHHHHhhhhccCCCE
Q 023563          124 SIVTHDGVKL-----------PC----------------------------------CALTTLSSFRQKFGSDAYDQVDV  158 (280)
Q Consensus       124 ~v~~~~~~~~-----------~~----------------------------------~~~~~l~~~~~~~a~aL~~~p~l  158 (280)
                      .+.|.-.+..           +.                                  +.+.+=+..+-..||+++.+|++
T Consensus       341 ~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~i  420 (497)
T COG5265         341 IVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPI  420 (497)
T ss_pred             cCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCE
Confidence            2332100000           00                                  00111111112226789999999


Q ss_pred             EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |++||.|+++|      +...|++..+  |+|-+++.|.+..+.           -||+|++|++ ++++.|+.++++
T Consensus       421 l~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrlsti~-----------~adeiivl~~g~i~erg~h~~ll  485 (497)
T COG5265         421 LILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLSTII-----------DADEIIVLDNGRIVERGTHEELL  485 (497)
T ss_pred             EEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehhhhcc-----------CCceEEEeeCCEEEecCcHHHHH
Confidence            99999988875      6666777664  999999999999886           5999999999 999999999987

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.7e-18  Score=146.99  Aligned_cols=142  Identities=20%  Similarity=0.175  Sum_probs=91.8

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCccc-cc---------
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDT-RY---------  120 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~-~~---------  120 (280)
                      +++.+|++...+++.++.++||++.+||++-|.||||||||||+ |+|+|+. .....|.+-...... +.         
T Consensus         2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLL-RilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yL   80 (209)
T COG4133           2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLL-RILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL   80 (209)
T ss_pred             cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHH-HHHHcccCCCCCeEEecCCCCccchhhHHHHHHHh
Confidence            68899999999999999999999999999999999999999999 9999983 333344332111110 00         


Q ss_pred             ----ccce---eee----------e--cccccccccccCchHH------------HHHH--hhhhccCCCEEEEeCcccH
Q 023563          121 ----GLDS---IVT----------H--DGVKLPCCALTTLSSF------------RQKF--GSDAYDQVDVIGIDEAQFF  167 (280)
Q Consensus       121 ----~~~~---v~~----------~--~~~~~~~~~~~~l~~~------------~~~~--a~aL~~~p~lLlLDEP~~~  167 (280)
                          ++..   +++          .  ......++..+++..+            .++.  ||-++..+++.|||||++.
T Consensus        81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ta  160 (209)
T COG4133          81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTA  160 (209)
T ss_pred             hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccc
Confidence                0000   000          0  0001112222222211            1122  3446789999999999765


Q ss_pred             HH------HHHHHHHHHhhcCCEEEEEEechhHh
Q 023563          168 ED------LYDFCREAADHDGKTVIVAGLDGDYL  195 (280)
Q Consensus       168 ~~------i~~~l~~l~~~~g~tviivtHdl~~~  195 (280)
                      .|      +-.++...+++ |-.||.+||..--+
T Consensus       161 LDk~g~a~l~~l~~~H~~~-GGiVllttHq~l~~  193 (209)
T COG4133         161 LDKEGVALLTALMAAHAAQ-GGIVLLTTHQPLPI  193 (209)
T ss_pred             cCHHHHHHHHHHHHHHhcC-CCEEEEecCCccCC
Confidence            43      45566666665 88999999986543

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.76  E-value=3.6e-18  Score=154.29  Aligned_cols=65  Identities=20%  Similarity=0.234  Sum_probs=54.2

Q ss_pred             hhhhccC---CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563          149 GSDAYDQ---VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----  215 (280)
Q Consensus       149 a~aL~~~---p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----  215 (280)
                      +++|+.+   |+++|||||++.+      .+++.|+++.++ |.|||++|||++++.           .||+++.|    
T Consensus       181 AraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIiitH~~~~i~-----------~aD~ii~Lgp~~  248 (261)
T cd03271         181 AKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVIK-----------CADWIIDLGPEG  248 (261)
T ss_pred             HHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-----------hCCEEEEecCCc
Confidence            5578875   7999999997654      478888888765 999999999999885           79999999    


Q ss_pred             --ec-eeccccCc
Q 023563          216 --TA-RCEFCGKR  225 (280)
Q Consensus       216 --~~-~i~~~g~~  225 (280)
                        ++ ++++.|++
T Consensus       249 g~~~G~iv~~Gt~  261 (261)
T cd03271         249 GDGGGQVVASGTP  261 (261)
T ss_pred             CCCCCEEEEeCCC
Confidence              66 88888764

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.73  E-value=9.1e-18  Score=147.35  Aligned_cols=145  Identities=12%  Similarity=0.076  Sum_probs=86.8

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh---cch---hCCeeEEEecCCccccc-----c
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ---AET---QKGRNVAVIKSNKDTRY-----G  121 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~---gl~---~~g~~i~~~~~~~~~~~-----~  121 (280)
                      |+++|.- +|+++.+++++++     ++++|+|||||||||++ ++|.   |..   .....++++.+......     .
T Consensus         6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll-~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~   78 (212)
T cd03274           6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVI-DSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCS   78 (212)
T ss_pred             EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHH-HHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCceEE
Confidence            6777765 8999999999988     79999999999999999 7765   221   11112222222211100     0


Q ss_pred             cceeeeec--------------c-cc----cccccccCchHHH------------HHH--hhhhcc----CCCEEEEeCc
Q 023563          122 LDSIVTHD--------------G-VK----LPCCALTTLSSFR------------QKF--GSDAYD----QVDVIGIDEA  164 (280)
Q Consensus       122 ~~~v~~~~--------------~-~~----~~~~~~~~l~~~~------------~~~--a~aL~~----~p~lLlLDEP  164 (280)
                      +..++...              . ..    .......++.+..            .+.  +++++.    +|+++++|||
T Consensus        79 ~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEP  158 (212)
T cd03274          79 VEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEI  158 (212)
T ss_pred             EEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCC
Confidence            11111110              0 00    0011111221111            111  456653    5899999999


Q ss_pred             ccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          165 QFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       165 ~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +..      ..+++.++++.+  +.++|++||+.+.. +          +||++++|..
T Consensus       159 t~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~~~~-~----------~~d~v~~~~~  204 (212)
T cd03274         159 DAALDFRNVSIVANYIKERTK--NAQFIVISLRNNMF-E----------LADRLVGIYK  204 (212)
T ss_pred             CcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcHHHH-H----------hCCEEEEEEe
Confidence            654      357888888753  68999999996544 3          8999999975

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.73  E-value=4.7e-18  Score=158.16  Aligned_cols=159  Identities=16%  Similarity=0.214  Sum_probs=107.4

Q ss_pred             cEEEcCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEec----CCc--ccccccc
Q 023563           52 MVSPRPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIK----SNK--DTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~----~~~--~~~~~~~  123 (280)
                      -|+++|+.+.|... .=+..||++|++||++.|+|.|||||||++ +++.|+.. +...|..-.    ++.  +.|.-++
T Consensus       322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~-~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfS  400 (546)
T COG4615         322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLA-MLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS  400 (546)
T ss_pred             ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHH-HHHhcccCCCCCceeECCccCCCCCHHHHHHHHH
Confidence            59999999999764 458899999999999999999999999999 99999843 222221111    111  1111122


Q ss_pred             eeeeecccccccccc------cCchHHHH--------------------------HHh--hhhccCCCEEEEeC------
Q 023563          124 SIVTHDGVKLPCCAL------TTLSSFRQ--------------------------KFG--SDAYDQVDVIGIDE------  163 (280)
Q Consensus       124 ~v~~~~~~~~~~~~~------~~l~~~~~--------------------------~~a--~aL~~~p~lLlLDE------  163 (280)
                      .+|....+....+..      ..++.+++                          |.|  .|++.+-+++++||      
T Consensus       401 avFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQD  480 (546)
T COG4615         401 AVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD  480 (546)
T ss_pred             HHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCC
Confidence            222211111110100      11111111                          112  26888999999999      


Q ss_pred             cccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          164 AQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       164 P~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      |.++..++..+.-+.+++|+||+.+|||-..-.           .|||++.+.+ +|+..
T Consensus       481 PaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-----------~ADrll~~~~G~~~e~  529 (546)
T COG4615         481 PAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-----------HADRLLEMRNGQLSEL  529 (546)
T ss_pred             hHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-----------hHHHHHHHhcCceeec
Confidence            678888888887777778999999999987765           7999999999 77643

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.71  E-value=5.5e-17  Score=156.69  Aligned_cols=163  Identities=18%  Similarity=0.200  Sum_probs=111.9

Q ss_pred             CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCccccc
Q 023563           49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTRY  120 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~~  120 (280)
                      ..+.++++|++..-    .++|+||++.+|||+||.|--|||+|-|+ +.|.|+.        ++|+.+....+....+.
T Consensus       260 ~~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~-~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~  334 (500)
T COG1129         260 GEPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELA-RALFGARPASSGEILLDGKPVRIRSPRDAIKA  334 (500)
T ss_pred             CCcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHH-HHHhCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence            45689999987542    58899999999999999999999999999 9999963        34554433322222222


Q ss_pred             ccceeeee-------------ccccccccc------ccCc---hHHHHHH----------------------------hh
Q 023563          121 GLDSIVTH-------------DGVKLPCCA------LTTL---SSFRQKF----------------------------GS  150 (280)
Q Consensus       121 ~~~~v~~~-------------~~~~~~~~~------~~~l---~~~~~~~----------------------------a~  150 (280)
                      ++.++...             .+.....+.      +.+-   ....+++                            |+
T Consensus       335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlar  414 (500)
T COG1129         335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLAR  414 (500)
T ss_pred             CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHH
Confidence            33322220             000000000      0000   0000111                            56


Q ss_pred             hhccCCCEEEEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          151 DAYDQVDVIGIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +|+.+|++|||||||-      ..+++++|++++++ |++||++|-+++++..          +||||++|++ +++..-
T Consensus       415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~----------~~DRIlVm~~Gri~~e~  483 (500)
T COG1129         415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLG----------LSDRILVMREGRIVGEL  483 (500)
T ss_pred             HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHh----------hCCEEEEEECCEEEEEe
Confidence            8999999999999964      45799999999997 9999999999998865          9999999999 887654


Q ss_pred             Ccce
Q 023563          224 KRAF  227 (280)
Q Consensus       224 ~~~~  227 (280)
                      +.++
T Consensus       484 ~~~~  487 (500)
T COG1129         484 DREE  487 (500)
T ss_pred             cccc
Confidence            4443

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.70  E-value=5.8e-17  Score=144.13  Aligned_cols=56  Identities=16%  Similarity=0.124  Sum_probs=43.0

Q ss_pred             hhhhc----cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 GSDAY----DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 a~aL~----~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      |++++    .+|+++|+|||++..      .+++.|+++++  +.++|++||+.+. .+          +||++++|.-
T Consensus       170 a~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~~-~~----------~~d~i~~l~~  235 (243)
T cd03272         170 ALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPEL-LE----------VADKFYGVKF  235 (243)
T ss_pred             HHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHH-Hh----------hCCEEEEEEE
Confidence            55675    368999999996643      47788888754  7889998998664 44          8999999875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.70  E-value=9.6e-17  Score=169.60  Aligned_cols=167  Identities=19%  Similarity=0.262  Sum_probs=118.5

Q ss_pred             CCccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-------CCeeEEEecCCccc
Q 023563           49 IHSMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-------KGRNVAVIKSNKDT  118 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-------~g~~i~~~~~~~~~  118 (280)
                      .++.++++|.+++.+.   .+.|+||||+|++|+.+||+||-|||||+|+ ..|.|...       -...++|.+|.+..
T Consensus       515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL-~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI  593 (1381)
T KOG0054|consen  515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLL-SAILGEMPKLSGSVAVNGSVAYVPQQPWI  593 (1381)
T ss_pred             CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHH-HHHhcCcccccceEEEcCeEEEeccccHh
Confidence            3457999999999964   3489999999999999999999999999999 88888521       23358899987654


Q ss_pred             ccc-cce--eeee---cccc---ccc---------cc----------ccCch-HHHHH--HhhhhccCCCEEEEeCcccH
Q 023563          119 RYG-LDS--IVTH---DGVK---LPC---------CA----------LTTLS-SFRQK--FGSDAYDQVDVIGIDEAQFF  167 (280)
Q Consensus       119 ~~~-~~~--v~~~---~~~~---~~~---------~~----------~~~l~-~~~~~--~a~aL~~~p~lLlLDEP~~~  167 (280)
                      ..+ +..  +|..   ..++   ..+         +.          -.+++ ....|  .|||+.++.|++|||-|.++
T Consensus       594 ~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSA  673 (1381)
T KOG0054|consen  594 QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSA  673 (1381)
T ss_pred             hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchh
Confidence            221 100  1110   0000   000         00          01222 22222  28999999999999999665


Q ss_pred             HH------HHH-HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          168 ED------LYD-FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       168 ~~------i~~-~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      .|      +++ .|+.+.+  ++|+|+|||.+++..           .||.|++|++ ++...|+.+|+.
T Consensus       674 VDahvg~~if~~ci~~~L~--~KT~ILVTHql~~L~-----------~ad~Iivl~~G~I~~~Gty~el~  730 (1381)
T KOG0054|consen  674 VDAHVGKHIFEECIRGLLR--GKTVILVTHQLQFLP-----------HADQIIVLKDGKIVESGTYEELL  730 (1381)
T ss_pred             hhHhhhHHHHHHHHHhhhc--CCEEEEEeCchhhhh-----------hCCEEEEecCCeEecccCHHHHH
Confidence            44      443 3444433  899999999999886           6999999999 999999999887

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.69  E-value=3.3e-16  Score=137.90  Aligned_cols=151  Identities=16%  Similarity=0.159  Sum_probs=92.6

Q ss_pred             CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchH
Q 023563           64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSS  143 (280)
Q Consensus        64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~  143 (280)
                      ...+.+|++|++.+ ++++|+|||||||||++ +.++++.+.++.-.+++........+..++.+... .+.+ ..+...
T Consensus        17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstll-r~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~-~~~l-s~g~s~   92 (216)
T cd03284          17 EPFVPNDTELDPER-QILLITGPNMAGKSTYL-RQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGA-SDDL-AGGRST   92 (216)
T ss_pred             CceEeeeEEecCCc-eEEEEECCCCCChHHHH-HHHHHHHHHhccCCeeccccceecceeeEeccCCc-hhhh-ccCcch
Confidence            45689999999988 99999999999999999 98887655444323333222111111112211111 0001 112222


Q ss_pred             HHH---HHhh--hhccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccce
Q 023563          144 FRQ---KFGS--DAYDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADS  211 (280)
Q Consensus       144 ~~~---~~a~--aL~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~  211 (280)
                      +..   +.+.  ..+.+|+++|||||   ++..|    ...+++.+.+..+.++|++||+.++..           ++|+
T Consensus        93 f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~-----------l~~~  161 (216)
T cd03284          93 FMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTE-----------LEGK  161 (216)
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHH-----------Hhhc
Confidence            221   1122  23579999999999   77665    244455555534889999999986554           7888


Q ss_pred             EEEeec-eeccccCcceee
Q 023563          212 VTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       212 i~~L~~-~i~~~g~~~~~~  229 (280)
                      +..+.+ .+...++.+++.
T Consensus       162 ~~~v~~~~~~~~~~~~~l~  180 (216)
T cd03284         162 LPRVKNFHVAVKEKGGGVV  180 (216)
T ss_pred             CCCeEEEEEEEEeeCCeEE
Confidence            777777 666666666664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.68  E-value=2.5e-16  Score=139.22  Aligned_cols=148  Identities=18%  Similarity=0.163  Sum_probs=90.4

Q ss_pred             CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCch
Q 023563           63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLS  142 (280)
Q Consensus        63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~  142 (280)
                      +...+.+|+++++++|++++|.||||+||||++ +.++-..+..+--.+++.....-..+..++.+.+.. +.. ..+++
T Consensus        15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll-~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~-d~~-~~~lS   91 (222)
T cd03285          15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYI-RQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGAS-DSQ-LKGVS   91 (222)
T ss_pred             CCCeEEeeEEEeecCCeEEEEECCCCCChHHHH-HHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccc-cch-hcCcC
Confidence            345789999999999999999999999999999 776543221100012222211111112222221111 111 23333


Q ss_pred             HHHH---HHhhhh--ccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccc
Q 023563          143 SFRQ---KFGSDA--YDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLAD  210 (280)
Q Consensus       143 ~~~~---~~a~aL--~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD  210 (280)
                      .+..   +.++++  +.+|+++|||||   |+..|    .+.+++.+.++.|.++|++||+ .++.+          +||
T Consensus        92 ~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~-~el~~----------~~~  160 (222)
T cd03285          92 TFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF-HELTA----------LAD  160 (222)
T ss_pred             hHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech-HHHHH----------Hhh
Confidence            3332   224445  689999999999   77665    2333455554348999999997 54544          899


Q ss_pred             eEEEeec-eeccccC
Q 023563          211 SVTKLTA-RCEFCGK  224 (280)
Q Consensus       211 ~i~~L~~-~i~~~g~  224 (280)
                      ++..+++ ++...+.
T Consensus       161 ~~~~i~~g~~~~~~~  175 (222)
T cd03285         161 EVPNVKNLHVTALTD  175 (222)
T ss_pred             cCCCeEEEEEEEEEe
Confidence            9999988 7665543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.67  E-value=1.7e-16  Score=164.30  Aligned_cols=68  Identities=19%  Similarity=0.189  Sum_probs=56.8

Q ss_pred             hhhhcc---CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563          149 GSDAYD---QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----  215 (280)
Q Consensus       149 a~aL~~---~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----  215 (280)
                      +++|+.   +|+++|||||++.+      .++++|+++.++ |.|||+++|+++++.           .||+++.|    
T Consensus       840 A~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G~TVIvi~H~~~~i~-----------~aD~ii~Lgp~~  907 (924)
T TIGR00630       840 AKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVVIEHNLDVIK-----------TADYIIDLGPEG  907 (924)
T ss_pred             HHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-----------hCCEEEEecCCc
Confidence            456775   59999999997654      478888888865 999999999999885           79999999    


Q ss_pred             --ec-eeccccCccee
Q 023563          216 --TA-RCEFCGKRAFF  228 (280)
Q Consensus       216 --~~-~i~~~g~~~~~  228 (280)
                        ++ ++++.|+++++
T Consensus       908 G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       908 GDGGGTIVASGTPEEV  923 (924)
T ss_pred             cCCCCEEEEeCCHHHh
Confidence              56 89999988764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.67  E-value=3.5e-16  Score=136.49  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=47.7

Q ss_pred             hhhhccCCCEEEEeCcccH------H-HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 GSDAYDQVDVIGIDEAQFF------E-DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~------~-~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +++++.+|+++|+|||++.      . .+.++|++++++.|.+||++||+++.+.           .||+++.|..
T Consensus       133 a~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-----------~~d~i~~l~~  197 (204)
T cd03240         133 AETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-----------AADHIYRVEK  197 (204)
T ss_pred             HHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-----------hCCEEEEEee
Confidence            5678899999999999543      4 5777787776644889999999998774           7999999976

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.67  E-value=3.2e-16  Score=136.11  Aligned_cols=143  Identities=17%  Similarity=0.146  Sum_probs=82.7

Q ss_pred             eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc-cceeeeecccccccccccCchHHHH--
Q 023563           70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG-LDSIVTHDGVKLPCCALTTLSSFRQ--  146 (280)
Q Consensus        70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~~--  146 (280)
                      ..|+++..|++++|+||||||||||+ +++++..+.++.-.+++.. ..+.+ ...++.+.....  ....++..+..  
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll-~~i~~~~~~~~~g~~~~~~-~~~i~~~dqi~~~~~~~d--~i~~~~s~~~~e~   96 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYL-RSIGLAVLLAQIGCFVPAE-SASIPLVDRIFTRIGAED--SISDGRSTFMAEL   96 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHH-HHHHHHHHHHHcCCCcccc-ccccCCcCEEEEEecCcc--cccCCceeHHHHH
Confidence            44566778999999999999999999 8888543211110122211 11111 111111111000  01112222211  


Q ss_pred             -HH--hhhhccCCCEEEEeCcccHH------HHH-HHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          147 -KF--GSDAYDQVDVIGIDEAQFFE------DLY-DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       147 -~~--a~aL~~~p~lLlLDEP~~~~------~i~-~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                       +.  ..+++.+|+++|+|||+...      .+. .+++.+.+. +.++|++||+.+++.           .|+++..+.
T Consensus        97 ~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~-~~~vi~~tH~~~~~~-----------~~~~~~~l~  164 (202)
T cd03243          97 LELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEK-GCRTLFATHFHELAD-----------LPEQVPGVK  164 (202)
T ss_pred             HHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEECChHHHHH-----------HhhcCCCeE
Confidence             11  23456799999999995432      343 345556554 999999999998876           688887777


Q ss_pred             c-eeccccCccee
Q 023563          217 A-RCEFCGKRAFF  228 (280)
Q Consensus       217 ~-~i~~~g~~~~~  228 (280)
                      . .+...++..++
T Consensus       165 ~~~~~~~~~~~~~  177 (202)
T cd03243         165 NLHMEELITTGGL  177 (202)
T ss_pred             EEEEEEEecCCee
Confidence            7 77666655443

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.67  E-value=1.3e-16  Score=129.38  Aligned_cols=36  Identities=33%  Similarity=0.431  Sum_probs=34.0

Q ss_pred             eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563           68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ  104 (280)
Q Consensus        68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~  104 (280)
                      |+|+||+|++|++++|+||||||||||+ ++|.|+..
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl-~~l~g~~~   36 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLL-KALAGLLP   36 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHH-HHHTTSSH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccce-eeeccccc
Confidence            7899999999999999999999999999 99999854

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.66  E-value=6.6e-16  Score=134.31  Aligned_cols=124  Identities=16%  Similarity=0.121  Sum_probs=72.3

Q ss_pred             CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEecCCcccccccceeeeecccccccccccC
Q 023563           64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTT  140 (280)
Q Consensus        64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  140 (280)
                      +..+++|++|+.  |++++|+||||||||||+ +.|+|..   ..|..+.   ... ..+....++..... .+.+ ..+
T Consensus        13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTll-r~i~~~~~l~~~G~~v~---a~~-~~~q~~~l~~~~~~-~d~l-~~~   83 (199)
T cd03283          13 EKRVANDIDMEK--KNGILITGSNMSGKSTFL-RTIGVNVILAQAGAPVC---ASS-FELPPVKIFTSIRV-SDDL-RDG   83 (199)
T ss_pred             CCeecceEEEcC--CcEEEEECCCCCChHHHH-HHHHHHHHHHHcCCEEe---cCc-cCcccceEEEeccc-hhcc-ccc
Confidence            346888887776  699999999999999999 9888853   2454432   110 00001111111000 0000 001


Q ss_pred             chHHH---HHHhh--hhcc--CCCEEEEeCcccHH------HH-HHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563          141 LSSFR---QKFGS--DAYD--QVDVIGIDEAQFFE------DL-YDFCREAADHDGKTVIVAGLDGDYLRR  197 (280)
Q Consensus       141 l~~~~---~~~a~--aL~~--~p~lLlLDEP~~~~------~i-~~~l~~l~~~~g~tviivtHdl~~~~~  197 (280)
                      ...+.   .+...  ..+.  +|+++|+|||+...      .+ ..+++++.+. |.++|++||+++++..
T Consensus        84 ~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~-~~tiiivTH~~~~~~~  153 (199)
T cd03283          84 ISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK-NTIGIISTHDLELADL  153 (199)
T ss_pred             cChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEcCcHHHHHh
Confidence            11111   11111  2233  99999999995432      33 3456777654 9999999999998864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.66  E-value=6.2e-16  Score=134.20  Aligned_cols=133  Identities=20%  Similarity=0.195  Sum_probs=79.7

Q ss_pred             eeEeeeeEeeCce-EEEEEcCCCCcHHHHHHHHHh--------cchhCCeeEEEecCCcccccc-cceeeeecccccccc
Q 023563           67 LHSEASVSSPSGE-IHVIVGPMFAGKTTTLLRRIQ--------AETQKGRNVAVIKSNKDTRYG-LDSIVTHDGVKLPCC  136 (280)
Q Consensus        67 vl~~isl~i~~Ge-i~~liGpNGsGKSTLl~~~l~--------gl~~~g~~i~~~~~~~~~~~~-~~~v~~~~~~~~~~~  136 (280)
                      .+-++||++.+|+ +++|.||||||||||+ +.+.        |.....        ......+ +...+...+..  ..
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll-~~i~~~~~~~~~G~~vp~--------~~~~~~~~~~~~~~~lg~~--~~   84 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTL-KTLGLLTLMAQSGLPIPA--------AEGSSLPVFENIFADIGDE--QS   84 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHH-HHHHHHHHHHHcCCCccc--------cccccCcCccEEEEecCch--hh
Confidence            3457899999995 8999999999999999 8776        322111        1000111 11111111100  00


Q ss_pred             cccCchHHH---HHH--hhhhccCCCEEEEeCcccHH------HHH-HHHHHHHhhcCCEEEEEEechhHhhhccCCccc
Q 023563          137 ALTTLSSFR---QKF--GSDAYDQVDVIGIDEAQFFE------DLY-DFCREAADHDGKTVIVAGLDGDYLRRSFGSVID  204 (280)
Q Consensus       137 ~~~~l~~~~---~~~--a~aL~~~p~lLlLDEP~~~~------~i~-~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~  204 (280)
                      ...++..+.   .+.  ....+.+|+++|+|||+...      .++ .+++++.+. |.++|++||+.+.. +       
T Consensus        85 l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~-~~~vi~~tH~~~l~-~-------  155 (200)
T cd03280          85 IEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLER-GALVIATTHYGELK-A-------  155 (200)
T ss_pred             hhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECCHHHHH-H-------
Confidence            011111111   111  11235799999999995433      343 456777654 99999999996544 3       


Q ss_pred             cccccceEEEeec-eeccc
Q 023563          205 IIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       205 ll~~aD~i~~L~~-~i~~~  222 (280)
                         +||++..|++ .+.+.
T Consensus       156 ---~~d~~~~l~~g~l~~~  171 (200)
T cd03280         156 ---YAYKREGVENASMEFD  171 (200)
T ss_pred             ---HHhcCCCeEEEEEEEe
Confidence               8999999998 77655

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.65  E-value=1.1e-16  Score=166.62  Aligned_cols=167  Identities=18%  Similarity=0.192  Sum_probs=112.6

Q ss_pred             cEEEcCceEEe----CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe---eEE--EecCC-cccccc
Q 023563           52 MVSPRPPLFSL----QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR---NVA--VIKSN-KDTRYG  121 (280)
Q Consensus        52 ~l~~~~ls~~y----~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~---~i~--~~~~~-~~~~~~  121 (280)
                      +...+|+.+.-    +.+.+|+||+=-+++|-.++|+|+||||||||| .+|+|=.-.|.   ++.  -.+-. ...+..
T Consensus       787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLL-dvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~  865 (1391)
T KOG0065|consen  787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLL-DVLAGRKTGGYIEGDILISGFPKDQETFARV  865 (1391)
T ss_pred             eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHH-HHHhcCcccceEEeEEEECCeeCchhhhccc
Confidence            34444544444    457899999999999999999999999999999 99988321111   110  00111 111223


Q ss_pred             cceeeeecccccc------------------------------cccccCchHHHHHH------------------hhhhc
Q 023563          122 LDSIVTHDGVKLP------------------------------CCALTTLSSFRQKF------------------GSDAY  153 (280)
Q Consensus       122 ~~~v~~~~~~~~~------------------------------~~~~~~l~~~~~~~------------------a~aL~  153 (280)
                      .+++-|++-....                              .+.+.++.++.+..                  |-+|+
T Consensus       866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELv  945 (1391)
T KOG0065|consen  866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELV  945 (1391)
T ss_pred             cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEe
Confidence            3444443221100                              01122333333322                  23689


Q ss_pred             cCC-CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec--eeccccC
Q 023563          154 DQV-DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA--RCEFCGK  224 (280)
Q Consensus       154 ~~p-~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~--~i~~~g~  224 (280)
                      .+| .||+|||||+++|      +++.++++++. |.||+|+-|.+.-         +|++.-|++++|+.  ++++.|+
T Consensus       946 A~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~t-GqtIlCTIHQPS~---------~ife~FD~LLLLkrGGqtVY~G~ 1015 (1391)
T KOG0065|consen  946 ANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADT-GQTILCTIHQPSI---------DIFEAFDELLLLKRGGQTVYFGP 1015 (1391)
T ss_pred             cCCceeEEecCCCCCccHHHHHHHHHHHHHHHhc-CCeEEEEecCCcH---------HHHHHHhHHHHHhcCCeEEEecC
Confidence            999 9999999988765      89999999996 9999999999873         45678999999987  8999999


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      ..+-.
T Consensus      1016 lG~~s 1020 (1391)
T KOG0065|consen 1016 LGENS 1020 (1391)
T ss_pred             ccccc
Confidence            87654

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=2.6e-16  Score=148.18  Aligned_cols=148  Identities=16%  Similarity=0.120  Sum_probs=96.7

Q ss_pred             CCccEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEEEecCCccc
Q 023563           49 IHSMVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVAVIKSNKDT  118 (280)
Q Consensus        49 ~~~~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~~~~~~~~~  118 (280)
                      ..|+|-+-+|+|.| +.+++++.++|-|.--+.++|+||||.|||||+ +++.|-..         ..-.|+++.|+...
T Consensus       583 ~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlL-kLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E  661 (807)
T KOG0066|consen  583 NPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLL-KLLIGKLDPNDGELRKNHRLRIGWFDQHANE  661 (807)
T ss_pred             CCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHH-HHHhcCCCCCcchhhccceeeeechhhhhHH
Confidence            34689999999999 668899999999999999999999999999999 88877421         12245666555432


Q ss_pred             ccccc----eeeeecccc-----cccccccCchHHH-------------HHHhh--hhccCCCEEEEeCcccHHHH--HH
Q 023563          119 RYGLD----SIVTHDGVK-----LPCCALTTLSSFR-------------QKFGS--DAYDQVDVIGIDEAQFFEDL--YD  172 (280)
Q Consensus       119 ~~~~~----~v~~~~~~~-----~~~~~~~~l~~~~-------------~~~a~--aL~~~p~lLlLDEP~~~~~i--~~  172 (280)
                      .....    .++++...+     ...+...++...+             .+.+.  --+..|++|||||||+.++|  ++
T Consensus       662 ~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESID  741 (807)
T KOG0066|consen  662 ALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESID  741 (807)
T ss_pred             hhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHH
Confidence            11110    011110000     0011111111111             11111  12469999999999998874  66


Q ss_pred             HHHHHHhhcCCEEEEEEechhHhhh
Q 023563          173 FCREAADHDGKTVIVAGLDGDYLRR  197 (280)
Q Consensus       173 ~l~~l~~~~g~tviivtHdl~~~~~  197 (280)
                      .|.+..++.+..|||||||-.++.+
T Consensus       742 ALaEAIney~GgVi~VsHDeRLi~e  766 (807)
T KOG0066|consen  742 ALAEAINEYNGGVIMVSHDERLIVE  766 (807)
T ss_pred             HHHHHHHhccCcEEEEecccceeee
Confidence            7777777778899999999887754

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.64  E-value=5e-16  Score=167.92  Aligned_cols=69  Identities=14%  Similarity=0.095  Sum_probs=59.1

Q ss_pred             hhhhc---cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee---
Q 023563          149 GSDAY---DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT---  216 (280)
Q Consensus       149 a~aL~---~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~---  216 (280)
                      |++|+   .+|++||||||++.+      .++++|.+++++ |.|||++||+++++ +          +||++++|.   
T Consensus       821 AraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G~TVIiIsHdl~~i-~----------~aDrVi~L~p~g  888 (1809)
T PRK00635        821 AYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVVIIEHNMHVV-K----------VADYVLELGPEG  888 (1809)
T ss_pred             HHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH-H----------hCCEEEEEccCC
Confidence            45675   699999999997654      588889998876 99999999999988 4          899999995   


Q ss_pred             ---c-eeccccCcceee
Q 023563          217 ---A-RCEFCGKRAFFT  229 (280)
Q Consensus       217 ---~-~i~~~g~~~~~~  229 (280)
                         + ++++.|+++++.
T Consensus       889 g~~~G~iv~~Gtpeel~  905 (1809)
T PRK00635        889 GNLGGYLLASCSPEELI  905 (1809)
T ss_pred             CCCCCEEEEeCCHHHHH
Confidence               5 889999998876

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.64  E-value=9.8e-16  Score=158.93  Aligned_cols=69  Identities=19%  Similarity=0.192  Sum_probs=59.4

Q ss_pred             hhhhccCC---CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563          149 GSDAYDQV---DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----  215 (280)
Q Consensus       149 a~aL~~~p---~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----  215 (280)
                      +++|+.+|   +++|||||++.+      .+++.|+++.++ |.|||++||+++++.           .||+|+.|    
T Consensus       842 AraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~-G~TVIiitH~~~~i~-----------~aD~ii~Lgp~~  909 (943)
T PRK00349        842 AKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK-GNTVVVIEHNLDVIK-----------TADWIIDLGPEG  909 (943)
T ss_pred             HHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-----------hCCEEEEecCCc
Confidence            45788899   999999997654      478888888765 999999999999885           79999999    


Q ss_pred             --ec-eeccccCcceee
Q 023563          216 --TA-RCEFCGKRAFFT  229 (280)
Q Consensus       216 --~~-~i~~~g~~~~~~  229 (280)
                        ++ ++++.|+++++.
T Consensus       910 G~~~G~Iv~~Gt~~el~  926 (943)
T PRK00349        910 GDGGGEIVATGTPEEVA  926 (943)
T ss_pred             CCCCCEEEEeCCHHHHH
Confidence              56 899999999886

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.63  E-value=2.8e-15  Score=130.86  Aligned_cols=130  Identities=18%  Similarity=0.180  Sum_probs=79.6

Q ss_pred             CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccc-ceeeeecccccccccccCc
Q 023563           63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGL-DSIVTHDGVKLPCCALTTL  141 (280)
Q Consensus        63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l  141 (280)
                      .+..+.+|++|+++.|++++|+||||+||||++ +.++++.+..+--.+++... ...++ ..++........  ...+.
T Consensus        14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll-~~i~~~~~la~~G~~vpa~~-~~l~~~d~I~~~~~~~d~--~~~~~   89 (204)
T cd03282          14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYL-KQIALLAIMAQIGCFVPAEY-ATLPIFNRLLSRLSNDDS--MERNL   89 (204)
T ss_pred             CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHH-HHHHHHHHHHHcCCCcchhh-cCccChhheeEecCCccc--cchhh
Confidence            355789999999999999999999999999999 88887643221111112111 11111 112221111000  01112


Q ss_pred             hHHHH---H--HhhhhccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563          142 SSFRQ---K--FGSDAYDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLRR  197 (280)
Q Consensus       142 ~~~~~---~--~a~aL~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~~  197 (280)
                      +.+..   +  ...+++.+|+++|+|||   +.-.+    ..++++.+.+. |.++|++||+.+++..
T Consensus        90 S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~-~~~~i~~TH~~~l~~~  156 (204)
T cd03282          90 STFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK-ESTVFFATHFRDIAAI  156 (204)
T ss_pred             hHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECChHHHHHH
Confidence            11111   1  12346789999999999   32322    35566777765 9999999999998864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.62  E-value=2.1e-15  Score=148.47  Aligned_cols=144  Identities=19%  Similarity=0.181  Sum_probs=102.0

Q ss_pred             CccEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---------CeeEEEecCCcccc
Q 023563           50 HSMVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---------GRNVAVIKSNKDTR  119 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---------g~~i~~~~~~~~~~  119 (280)
                      ...|+++|++..-++ +..+++++|+|++|+.+.|.||||||||||+ |.|+|+...         +.++.|++|.+-..
T Consensus       390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLl-RaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p  468 (604)
T COG4178         390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLL-RALAGLWPWGSGRISMPADSALLFLPQRPYLP  468 (604)
T ss_pred             cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHH-HHHhccCccCCCceecCCCCceEEecCCCCCC
Confidence            357999999998854 7899999999999999999999999999999 999998542         33456666655322


Q ss_pred             cc-cceeeee--------cccccccccccCchHHHHHH--------------------hhhhccCCCEEEEeCcccHHH-
Q 023563          120 YG-LDSIVTH--------DGVKLPCCALTTLSSFRQKF--------------------GSDAYDQVDVIGIDEAQFFED-  169 (280)
Q Consensus       120 ~~-~~~v~~~--------~~~~~~~~~~~~l~~~~~~~--------------------a~aL~~~p~lLlLDEP~~~~~-  169 (280)
                      .+ +...+-+        +..+...+...++.++.++.                    ||.++++|++++|||.|++.| 
T Consensus       469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe  548 (604)
T COG4178         469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE  548 (604)
T ss_pred             CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence            11 0011100        01112233445566665554                    678999999999999988764 


Q ss_pred             -----HHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          170 -----LYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       170 -----i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                           +++.+++-.  .+.|||-|+|......
T Consensus       549 ~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~~  578 (604)
T COG4178         549 ETEDRLYQLLKEEL--PDATVISVGHRPTLWN  578 (604)
T ss_pred             HHHHHHHHHHHhhC--CCCEEEEeccchhhHH
Confidence                 444444332  4899999999987665

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.62  E-value=4.7e-15  Score=140.32  Aligned_cols=155  Identities=16%  Similarity=0.181  Sum_probs=104.8

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CC----eeEEEecCCcccccc--c
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KG----RNVAVIKSNKDTRYG--L  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g----~~i~~~~~~~~~~~~--~  122 (280)
                      .+++--.++|.||+.. |.==.=+|..||++|++||||-||||+. ++|+|...  .|    -+++|-+|.....+.  +
T Consensus       341 ~lv~y~~~~k~~g~F~-L~V~~G~i~~gEvigilGpNgiGKTTFv-k~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV  418 (591)
T COG1245         341 TLVEYPDLKKTYGDFK-LEVEEGEIYDGEVIGILGPNGIGKTTFV-KLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTV  418 (591)
T ss_pred             eeeecchheeecCceE-EEecCCeeecceEEEEECCCCcchHHHH-HHHhccccCCCCCCccceEeecceeecCCCCCcH
Confidence            3677778888888643 2222335677889999999999999999 99999743  12    466776665433221  1


Q ss_pred             ceeee---e-----cccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHHH------HHHHH
Q 023563          123 DSIVT---H-----DGVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFED------LYDFC  174 (280)
Q Consensus       123 ~~v~~---~-----~~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~~------i~~~l  174 (280)
                      ..++.   .     .....+.....++..+.++.              |.+|..++++.|||||.+.+|      +...|
T Consensus       419 ~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvI  498 (591)
T COG1245         419 EDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVI  498 (591)
T ss_pred             HHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHH
Confidence            11111   0     00001111223344444433              557899999999999977654      56778


Q ss_pred             HHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          175 REAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       175 ~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ++....+++|.++|.||+-++..          ++||++++..
T Consensus       499 RR~~e~~~kta~vVdHDi~~~dy----------vsDr~ivF~G  531 (591)
T COG1245         499 RRFIENNEKTALVVDHDIYMIDY----------VSDRLIVFEG  531 (591)
T ss_pred             HHHHhhcCceEEEEecceehhhh----------hhceEEEEec
Confidence            88888889999999999999886          8999998765

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.62  E-value=1e-14  Score=125.88  Aligned_cols=161  Identities=17%  Similarity=0.208  Sum_probs=108.0

Q ss_pred             ccEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCee--------------------E
Q 023563           51 SMVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRN--------------------V  109 (280)
Q Consensus        51 ~~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~--------------------i  109 (280)
                      ..|+++++.|.|.. .+++-|+|++++.|....++|.||||||||+ ++++|-...+..                    .
T Consensus        12 ~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlL-KiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl   90 (291)
T KOG2355|consen   12 FAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLL-KILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL   90 (291)
T ss_pred             ceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhH-HHhcCcccccCCeEEEcCcCccccccccccCce
Confidence            36999999999954 6899999999999999999999999999999 999996432221                    1


Q ss_pred             EEecCCccccccc-ceeeeecccc----------------cccccccC---------chH---HHHHHhhhhccCCCEEE
Q 023563          110 AVIKSNKDTRYGL-DSIVTHDGVK----------------LPCCALTT---------LSS---FRQKFGSDAYDQVDVIG  160 (280)
Q Consensus       110 ~~~~~~~~~~~~~-~~v~~~~~~~----------------~~~~~~~~---------l~~---~~~~~a~aL~~~p~lLl  160 (280)
                      .|+...-.....+ +.+.-+....                .....+.+         .++   -+-+.++.|+..-++||
T Consensus        91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLL  170 (291)
T KOG2355|consen   91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLL  170 (291)
T ss_pred             eEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEE
Confidence            2221110000000 0000000000                00000000         000   01111446788889999


Q ss_pred             EeCcc------cHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          161 IDEAQ------FFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       161 LDEP~------~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      |||.|      ++.++++.+++-++++|.|||..||-.+=.+.          ++.+++.|+. +++..
T Consensus       171 LDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~----------Wpthl~yi~~Gkl~~~  229 (291)
T KOG2355|consen  171 LDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLET----------WPTHLVYIKSGKLVDN  229 (291)
T ss_pred             eeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhh----------cchhEEEecCCeeeec
Confidence            99995      45678999999998899999999999987765          8999999999 88763

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.62  E-value=1.4e-15  Score=132.17  Aligned_cols=58  Identities=16%  Similarity=0.056  Sum_probs=45.5

Q ss_pred             hhhh----ccCCCEEEEeCcccHH------HHHHHHHHHHhh--cCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          149 GSDA----YDQVDVIGIDEAQFFE------DLYDFCREAADH--DGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       149 a~aL----~~~p~lLlLDEP~~~~------~i~~~l~~l~~~--~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                      ++++    +.+|+++|||||+...      .+.++|.++.++  .+.+||++||+++++.+           +|+|.+|+
T Consensus       121 a~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~-----------~d~v~~~~  189 (198)
T cd03276         121 CLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLAS-----------SDDVKVFR  189 (198)
T ss_pred             HHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccccc-----------ccceeEEE
Confidence            4556    5899999999996654      477888887653  24689999999999975           49999987


Q ss_pred             c
Q 023563          217 A  217 (280)
Q Consensus       217 ~  217 (280)
                      .
T Consensus       190 ~  190 (198)
T cd03276         190 M  190 (198)
T ss_pred             e
Confidence            6

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.60  E-value=7.4e-15  Score=131.54  Aligned_cols=57  Identities=18%  Similarity=0.151  Sum_probs=46.3

Q ss_pred             hhhhcc----CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 GSDAYD----QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 a~aL~~----~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +++++.    .|+++|+|||++..      .+.+.|++++++ |.++|++||+.+...           +||++++|..
T Consensus       167 a~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~~~~-----------~~d~i~~~~~  233 (247)
T cd03275         167 ALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEEFFS-----------KADALVGVYR  233 (247)
T ss_pred             HHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHHHHh-----------hCCeEEEEEe
Confidence            456665    48999999997654      477888888765 999999999987664           8999999876

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.57  E-value=1.4e-14  Score=129.83  Aligned_cols=55  Identities=13%  Similarity=0.094  Sum_probs=42.2

Q ss_pred             hhhhc----cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          149 GSDAY----DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       149 a~aL~----~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                      +++++    .+|+++|+|||++..      .+++.|+++. + |.++|++||+.+...           .||+++-++
T Consensus       178 a~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~~~~~-----------~~d~v~~~~  242 (251)
T cd03273         178 SLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKEGMFN-----------NANVLFRTR  242 (251)
T ss_pred             HHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCHHHHH-----------hCCEEEEEE
Confidence            44555    578999999996543      4777777774 3 899999999955443           899998876

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.57  E-value=1.3e-14  Score=131.79  Aligned_cols=146  Identities=18%  Similarity=0.129  Sum_probs=85.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhh
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGS  150 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~  150 (280)
                      .-++|+||||||||||+ +.++|+..        .|+++..+.........+..+.|. ........+.+......-...
T Consensus       112 ~~~~i~g~~g~GKttl~-~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~-~~~~r~~v~~~~~k~~~~~~~  189 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLL-RDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQH-DVGIRTDVLDGCPKAEGMMML  189 (270)
T ss_pred             eEEEEEcCCCCCHHHHH-HHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccc-cccccccccccchHHHHHHHH
Confidence            57899999999999999 99999743        345554322111111112223332 211111112222221111222


Q ss_pred             hhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhc-cCCcccc--ccccceEEEeeceeccccCcce
Q 023563          151 DAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRS-FGSVIDI--IPLADSVTKLTARCEFCGKRAF  227 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~-~~~~~~l--l~~aD~i~~L~~~i~~~g~~~~  227 (280)
                      ..+.+|++||+|||.....+..+++.+. + |.++|++||+.+..... =-.+..|  ..++||+++|+++- ..|++++
T Consensus       190 i~~~~P~villDE~~~~e~~~~l~~~~~-~-G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~-~~g~~~~  266 (270)
T TIGR02858       190 IRSMSPDVIVVDEIGREEDVEALLEALH-A-GVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK-GPGTVEA  266 (270)
T ss_pred             HHhCCCCEEEEeCCCcHHHHHHHHHHHh-C-CCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC-CCCceee
Confidence            3457999999999988877777776664 4 99999999986652210 0001111  25799999999832 6777776


Q ss_pred             ee
Q 023563          228 FT  229 (280)
Q Consensus       228 ~~  229 (280)
                      +.
T Consensus       267 i~  268 (270)
T TIGR02858       267 VY  268 (270)
T ss_pred             cc
Confidence            64

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.54  E-value=6.1e-14  Score=117.84  Aligned_cols=132  Identities=17%  Similarity=0.120  Sum_probs=77.2

Q ss_pred             EeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe-eEEEecCCcccccccceeeeecc-cccccccccCchHHHH
Q 023563           69 SEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR-NVAVIKSNKDTRYGLDSIVTHDG-VKLPCCALTTLSSFRQ  146 (280)
Q Consensus        69 ~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~-~i~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~~  146 (280)
                      ...++.+..+.+..|+|||||||||++ +.+........ ....   ....+.+. .+..... ..+....+..-.....
T Consensus        12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l-~~i~~~~~~~~~~~~~---~~~~~~g~-~~~~~~~~~i~~~~~lS~G~~~~~   86 (162)
T cd03227          12 VPNDVTFGEGSLTIITGPNGSGKSTIL-DAIGLALGGAQSATRR---RSGVKAGC-IVAAVSAELIFTRLQLSGGEKELS   86 (162)
T ss_pred             eccEEecCCCCEEEEECCCCCCHHHHH-HHHHHHHHhcchhhhc---cCcccCCC-cceeeEEEEehheeeccccHHHHH
Confidence            344566666779999999999999999 77654322111 0000   00000000 0000000 0000000111122222


Q ss_pred             HHhhhhcc----CCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          147 KFGSDAYD----QVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       147 ~~a~aL~~----~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                      ..+++|+.    +|+++|+|||...      ..+.+.+.++..+ |.++|++||+.+.+.           .+|+++.|.
T Consensus        87 ~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~-----------~~d~~~~l~  154 (162)
T cd03227          87 ALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAE-----------LADKLIHIK  154 (162)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHH-----------hhhhEEEEE
Confidence            33556654    8999999999443      3477777777766 899999999999886           689999997


Q ss_pred             c
Q 023563          217 A  217 (280)
Q Consensus       217 ~  217 (280)
                      .
T Consensus       155 ~  155 (162)
T cd03227         155 K  155 (162)
T ss_pred             E
Confidence            7

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.53  E-value=1e-13  Score=132.48  Aligned_cols=168  Identities=17%  Similarity=0.182  Sum_probs=118.2

Q ss_pred             CccEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeE-EEecCCcccc
Q 023563           50 HSMVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNV-AVIKSNKDTR  119 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i-~~~~~~~~~~  119 (280)
                      +++|++++++..-.. ...+++|||+|.+|||+||.|-.|-|-+.|+ .+|+|+..        +|+++ ....+....+
T Consensus       255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~-eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~  333 (501)
T COG3845         255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV-EAISGLRKPASGRILLNGKDVLGRLSPRERRR  333 (501)
T ss_pred             CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHH-HHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence            679999999977643 5789999999999999999999999999999 99999852        34333 1111111112


Q ss_pred             cccceeeeec-------------cccc--------ccccccC---chHHH----HHH-----------------------
Q 023563          120 YGLDSIVTHD-------------GVKL--------PCCALTT---LSSFR----QKF-----------------------  148 (280)
Q Consensus       120 ~~~~~v~~~~-------------~~~~--------~~~~~~~---l~~~~----~~~-----------------------  148 (280)
                      .+++++....             +...        ....+.+   +..+.    +++                       
T Consensus       334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~I  413 (501)
T COG3845         334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLI  413 (501)
T ss_pred             cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhh
Confidence            3333333210             0000        0000011   11111    111                       


Q ss_pred             -hhhhccCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563          149 -GSDAYDQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       149 -a~aL~~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                       ||+|..+|++||+.+||-..|      +.+.|.+.+++ |+.|+++|-|+|++.+          +||||.+|.+ +++
T Consensus       414 laREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~----------lsDrIaVi~~Gri~  482 (501)
T COG3845         414 LARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILE----------LSDRIAVIYEGRIV  482 (501)
T ss_pred             hhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhc-CCEEEEEehhHHHHHH----------hhheeeeeeCCcee
Confidence             678999999999999987654      67788888876 9999999999999976          9999999999 999


Q ss_pred             cccCcceee
Q 023563          221 FCGKRAFFT  229 (280)
Q Consensus       221 ~~g~~~~~~  229 (280)
                      ...++++..
T Consensus       483 ~~~~~~~~t  491 (501)
T COG3845         483 GIVPPEEAT  491 (501)
T ss_pred             cccccccCC
Confidence            888887643

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=3.9e-14  Score=135.67  Aligned_cols=157  Identities=15%  Similarity=0.137  Sum_probs=103.1

Q ss_pred             CccEEEcCceEEeCCe--eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hh--------CCeeEEEecCCccc
Q 023563           50 HSMVSPRPPLFSLQNR--NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQ--------KGRNVAVIKSNKDT  118 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~--~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~--------~g~~i~~~~~~~~~  118 (280)
                      .|.+++.+|++.|...  ..+.++++.++.-+.++++|+||+||||++ +++.+- ..        .+.+++++.|+.-.
T Consensus       360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~l-Ki~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd  438 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLL-KILKGDLTPTRGIVGRHPRLRIKYFAQHHVD  438 (582)
T ss_pred             CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHH-HHHhccCCcccceeeecccceecchhHhhhh
Confidence            4689999999999653  589999999999999999999999999999 888873 21        22344444443210


Q ss_pred             ccccceeee--------ecccc----cccccccCch---------------HHHHHHhhhhccCCCEEEEeCcccHHHH-
Q 023563          119 RYGLDSIVT--------HDGVK----LPCCALTTLS---------------SFRQKFGSDAYDQVDVIGIDEAQFFEDL-  170 (280)
Q Consensus       119 ~~~~~~v~~--------~~~~~----~~~~~~~~l~---------------~~~~~~a~aL~~~p~lLlLDEP~~~~~i-  170 (280)
                      ..  ...++        ..+..    ...+...+++               ..+-.+|.....+|.+|+|||||+.+|+ 
T Consensus       439 ~l--~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~d  516 (582)
T KOG0062|consen  439 FL--DKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRD  516 (582)
T ss_pred             HH--HHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHH
Confidence            00  00000        00000    0001111110               0000113345789999999999998863 


Q ss_pred             -HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563          171 -YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC  219 (280)
Q Consensus       171 -~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i  219 (280)
                       ++.|.+..+..+..|||||||.+++..          +|+++++.++ ++
T Consensus       517 sl~AL~~Al~~F~GGVv~VSHd~~fi~~----------~c~E~Wvve~g~v  557 (582)
T KOG0062|consen  517 SLGALAKALKNFNGGVVLVSHDEEFISS----------LCKELWVVEDGKV  557 (582)
T ss_pred             HHHHHHHHHHhcCCcEEEEECcHHHHhh----------cCceeEEEcCCcE
Confidence             455554444567789999999999986          9999999988 54

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.51  E-value=1.5e-13  Score=121.53  Aligned_cols=129  Identities=16%  Similarity=0.202  Sum_probs=77.9

Q ss_pred             CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc-cceeeeecccccccccccCch
Q 023563           64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG-LDSIVTHDGVKLPCCALTTLS  142 (280)
Q Consensus        64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~  142 (280)
                      +..+.+|++|.+.+|++++|.||||+||||++ +.+++..+..+.-.+++... .... +..++.+.+....  ...+.+
T Consensus        17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll-~~i~~~~~la~~G~~v~a~~-~~~~~~~~i~~~~~~~d~--~~~~~S   92 (222)
T cd03287          17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYI-RQVALITIMAQIGSFVPASS-ATLSIFDSVLTRMGASDS--IQHGMS   92 (222)
T ss_pred             CCEEEEeEEEEecCCcEEEEECCCCCCHHHHH-HHHHHHHHHHhCCCEEEcCc-eEEeccceEEEEecCccc--cccccc
Confidence            35789999999999999999999999999999 98888533211111222211 1111 1122222111000  112333


Q ss_pred             HHHHHH---h--hhhccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          143 SFRQKF---G--SDAYDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       143 ~~~~~~---a--~aL~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      .+....   .  ...+.++.++|+|||   |+..+    ...+++.+.+..+.++|++||+.+.+.
T Consensus        93 tF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~  158 (222)
T cd03287          93 TFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE  158 (222)
T ss_pred             hHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence            333222   1  123568999999999   44332    345666766544889999999999875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.51  E-value=1.6e-13  Score=117.38  Aligned_cols=57  Identities=19%  Similarity=0.157  Sum_probs=46.3

Q ss_pred             hhhhc----cCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 GSDAY----DQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 a~aL~----~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +++++    .+|+++|+|||+..      ..+.+.+.+++++ |.++|++||+.+.+.           .+|+++.+..
T Consensus       106 aral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~~~-----------~adrvi~i~~  172 (178)
T cd03239         106 ALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEMFE-----------NADKLIGVLF  172 (178)
T ss_pred             HHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHh-----------hCCeEEEEEE
Confidence            55654    69999999999543      3577888888765 899999999998774           7999999875

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.50  E-value=1.9e-13  Score=132.53  Aligned_cols=153  Identities=19%  Similarity=0.190  Sum_probs=110.4

Q ss_pred             ccEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----------CC--eeEEEecCCc
Q 023563           51 SMVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----------KG--RNVAVIKSNK  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----------~g--~~i~~~~~~~  116 (280)
                      .+|++++|+.+=.  +..+++|+||+|++|+-+.|.||||||||+|+ |+++|++.          .+  +++.|++|.+
T Consensus       432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLl-RvlggLWp~~~G~l~k~~~~~~~~lfflPQrP  510 (659)
T KOG0060|consen  432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLL-RVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRP  510 (659)
T ss_pred             ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHH-HHHhcccccCCCeEEecccCCCCceEEecCCC
Confidence            5899999998874  45678889999999999999999999999999 99999843          33  4577888765


Q ss_pred             ccccccceeeee----------------cccccccccccCchHHHHHH-------------------------hhhhccC
Q 023563          117 DTRYGLDSIVTH----------------DGVKLPCCALTTLSSFRQKF-------------------------GSDAYDQ  155 (280)
Q Consensus       117 ~~~~~~~~v~~~----------------~~~~~~~~~~~~l~~~~~~~-------------------------a~aL~~~  155 (280)
                      --  .++.+-+|                +......+....+.++.++.                         ||-+..+
T Consensus       511 Ym--t~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~k  588 (659)
T KOG0060|consen  511 YM--TLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHK  588 (659)
T ss_pred             Cc--cccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcC
Confidence            32  11111110                00001112222333333333                         5668899


Q ss_pred             CCEEEEeCcccHH--HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          156 VDVIGIDEAQFFE--DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       156 p~lLlLDEP~~~~--~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      |++-+|||.|++.  ++-..+-+..++.|+|.|-|+|...+-.           +-|.++-|+.
T Consensus       589 Pk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~k-----------fHd~~L~~~g  641 (659)
T KOG0060|consen  589 PKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWK-----------FHDYVLRMDG  641 (659)
T ss_pred             CceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHh-----------hhhEEEEecC
Confidence            9999999998875  5777777777778999999999998775           7788887765

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1.9e-14  Score=135.79  Aligned_cols=158  Identities=19%  Similarity=0.219  Sum_probs=101.1

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc---hhCCeeEEEecCCcccc--cccceeee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE---TQKGRNVAVIKSNKDTR--YGLDSIVT  127 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl---~~~g~~i~~~~~~~~~~--~~~~~v~~  127 (280)
                      |+++|.+.+-.++.++.+.||.|-.|..|||+||||-|||||+ +.|+.-   .....++.+-.|.....  ..+..++.
T Consensus       265 IKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLL-kHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~  343 (807)
T KOG0066|consen  265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLL-KHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK  343 (807)
T ss_pred             ceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHH-HHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence            8899999999899999999999999999999999999999999 766642   12233333322221100  00000110


Q ss_pred             ecc----------cc------------------c-------------------------------ccccccCchHHHHHH
Q 023563          128 HDG----------VK------------------L-------------------------------PCCALTTLSSFRQKF  148 (280)
Q Consensus       128 ~~~----------~~------------------~-------------------------------~~~~~~~l~~~~~~~  148 (280)
                      .+.          .+                  +                               +.....+=+.++-..
T Consensus       344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL  423 (807)
T KOG0066|consen  344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL  423 (807)
T ss_pred             hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence            000          00                  0                               000000111111122


Q ss_pred             hhhhccCCCEEEEeCcccHHHHHHH--HHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          149 GSDAYDQVDVIGIDEAQFFEDLYDF--CREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~~i~~~--l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      ||||..+|-+|+|||||+.+++-..  |..+.+--.+|+++||||-.+...          +|..|+.|++ ++..
T Consensus       424 ARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~----------VCtdIIHLD~qkLhy  489 (807)
T KOG0066|consen  424 ARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDS----------VCTDIIHLDNQKLHY  489 (807)
T ss_pred             HHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHH----------HHHHHhhhhhhhhhh
Confidence            6789999999999999998874222  223333235799999999999986          9999999998 6543

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.41  E-value=1.8e-12  Score=114.26  Aligned_cols=131  Identities=15%  Similarity=0.135  Sum_probs=78.0

Q ss_pred             CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc-cceeeeecccccccccccCc
Q 023563           63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG-LDSIVTHDGVKLPCCALTTL  141 (280)
Q Consensus        63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l  141 (280)
                      ++..+-+|++|++++|++++|.||||+||||++ +.+++..+..+--.+++... .+.+ +..++.+.+....  ...+.
T Consensus        15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l-~~i~~~~~la~~G~~vpa~~-~~i~~~~~i~~~~~~~d~--~~~~~   90 (218)
T cd03286          15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLL-RTVCLAVIMAQMGMDVPAKS-MRLSLVDRIFTRIGARDD--IMKGE   90 (218)
T ss_pred             CCCeEEeeeEEeecCCcEEEEECCCCCchHHHH-HHHHHHHHHHHcCCccCccc-cEeccccEEEEecCcccc--cccCc
Confidence            356789999999999999999999999999999 88877533222111222221 1111 1122222111000  01222


Q ss_pred             hHHHHHH---h--hhhccCCCEEEEeCc---ccHH---HHHHH-HHHHHhhcCCEEEEEEechhHhhh
Q 023563          142 SSFRQKF---G--SDAYDQVDVIGIDEA---QFFE---DLYDF-CREAADHDGKTVIVAGLDGDYLRR  197 (280)
Q Consensus       142 ~~~~~~~---a--~aL~~~p~lLlLDEP---~~~~---~i~~~-l~~l~~~~g~tviivtHdl~~~~~  197 (280)
                      +.+....   .  ...+.+|+++|+|||   ++..   .+... ++.+.+..+.++|++||+.+.+..
T Consensus        91 StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~  158 (218)
T cd03286          91 STFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE  158 (218)
T ss_pred             chHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence            2222211   1  123579999999999   3322   23333 566655348999999999998875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.39  E-value=6.9e-13  Score=113.84  Aligned_cols=114  Identities=17%  Similarity=0.152  Sum_probs=58.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHH---HHHHhhhhcc--
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSF---RQKFGSDAYD--  154 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~---~~~~a~aL~~--  154 (280)
                      ++.|.||||+||||++ +.++-..+..+.-.+++.....-..+..++...+....  ...+...+   ..+.++++..  
T Consensus         1 ~~~ltG~N~~GKst~l-~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~--~~~~~s~fs~~~~~l~~~l~~~~   77 (185)
T smart00534        1 VVIITGPNMGGKSTYL-RQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDS--LAQGLSTFMVEMKETANILKNAT   77 (185)
T ss_pred             CEEEECCCCCcHHHHH-HHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCc--hhccccHHHHHHHHHHHHHHhCC
Confidence            3679999999999999 77763221111000111111000011122221111000  01122222   2233444444  


Q ss_pred             CCCEEEEeCcccH------HHH-HHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          155 QVDVIGIDEAQFF------EDL-YDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       155 ~p~lLlLDEP~~~------~~i-~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      +|+++|+|||+..      ..+ ..+++.+.++.+.++|++||+.+...
T Consensus        78 ~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~  126 (185)
T smart00534       78 ENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK  126 (185)
T ss_pred             CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence            9999999999543      233 34556665534899999999997553

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.38  E-value=1.5e-12  Score=114.35  Aligned_cols=125  Identities=19%  Similarity=0.195  Sum_probs=68.0

Q ss_pred             eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---CCeeEEEecCCccccccc-ceeeeecccccccccccCc
Q 023563           66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---KGRNVAVIKSNKDTRYGL-DSIVTHDGVKLPCCALTTL  141 (280)
Q Consensus        66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---~g~~i~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l  141 (280)
                      .+=+|+++.=..+.+++|.||||+|||||+ +.+.....   .|.-   ++.. ..+.+. ..++.+..  .......++
T Consensus        17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlL-k~i~~~~~la~~G~~---v~a~-~~~~~~~d~i~~~l~--~~~si~~~~   89 (213)
T cd03281          17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYL-KQVALIVFLAHIGSF---VPAD-SATIGLVDKIFTRMS--SRESVSSGQ   89 (213)
T ss_pred             eEcceEEecCCCceEEEEECCCCCChHHHH-HHHHHHHHHHhCCCe---eEcC-CcEEeeeeeeeeeeC--CccChhhcc
Confidence            454555554222379999999999999999 77764211   1111   1111 111110 00111100  000111223


Q ss_pred             hHHHHHH-----hhhhccCCCEEEEeCcccHH------H-HHHHHHHHHhh--cCCEEEEEEechhHhhh
Q 023563          142 SSFRQKF-----GSDAYDQVDVIGIDEAQFFE------D-LYDFCREAADH--DGKTVIVAGLDGDYLRR  197 (280)
Q Consensus       142 ~~~~~~~-----a~aL~~~p~lLlLDEP~~~~------~-i~~~l~~l~~~--~g~tviivtHdl~~~~~  197 (280)
                      +.+....     +.+++.+|.++|+|||....      . +.++++++.+.  .+.++|++||+.+.+..
T Consensus        90 S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~  159 (213)
T cd03281          90 SAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR  159 (213)
T ss_pred             chHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence            3332222     45667899999999995432      2 34577777653  13589999999998864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.38  E-value=6.5e-12  Score=110.34  Aligned_cols=57  Identities=12%  Similarity=0.038  Sum_probs=42.7

Q ss_pred             hhccCCCEEEEeCcccH------HHHHHHHHHHHhhcC-CEEEEEEechhHhhhccCCccccccccc--eEEEeec
Q 023563          151 DAYDQVDVIGIDEAQFF------EDLYDFCREAADHDG-KTVIVAGLDGDYLRRSFGSVIDIIPLAD--SVTKLTA  217 (280)
Q Consensus       151 aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g-~tviivtHdl~~~~~~~~~~~~ll~~aD--~i~~L~~  217 (280)
                      +++.+|+++|+|||+..      ..+++.+.+++++.| .++|++||++....+          +||  +|++|.+
T Consensus       144 ~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~----------~~~~~~v~~l~~  209 (213)
T cd03277         144 QELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN----------YHEKMTVLCVYN  209 (213)
T ss_pred             HhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc----------ccCceEEEEEec
Confidence            34589999999999654      357888888876434 589999999987764          776  5566654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.37  E-value=3.1e-12  Score=120.31  Aligned_cols=140  Identities=22%  Similarity=0.254  Sum_probs=89.6

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEE--------EecCCcccccccceee-
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVA--------VIKSNKDTRYGLDSIV-  126 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~--------~~~~~~~~~~~~~~v~-  126 (280)
                      ..+++|+||+|++|++++++|+|||||||++ ++|.|...         +...+.        .++...+..++ +..+ 
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttll-Rmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~-~~til  473 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLL-RMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFG-EVTIL  473 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHH-HHHHHHhhcccccccCCCCCceeccccchhhccCcccccccC-chhHH
Confidence            5699999999999999999999999999999 99998632         111111        11111111111 0011 


Q ss_pred             eec-------ccccccccccCc----------------hHHHHHHhhhhccCCCEEEEeCcccH------HHHHHHHHHH
Q 023563          127 THD-------GVKLPCCALTTL----------------SSFRQKFGSDAYDQVDVIGIDEAQFF------EDLYDFCREA  177 (280)
Q Consensus       127 ~~~-------~~~~~~~~~~~l----------------~~~~~~~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l  177 (280)
                      .+.       +.....+...++                ..-..+.|+.++..|.+++.||-.+.      ..+..-|.++
T Consensus       474 ehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisel  553 (593)
T COG2401         474 EHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL  553 (593)
T ss_pred             HHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHH
Confidence            000       000000111111                12222336788999999999998443      3477778888


Q ss_pred             HhhcCCEEEEEEechhHhhhccCCccccccc-cceEEEee
Q 023563          178 ADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL-ADSVTKLT  216 (280)
Q Consensus       178 ~~~~g~tviivtHdl~~~~~~~~~~~~ll~~-aD~i~~L~  216 (280)
                      +++.|.|++++||..+...+          + -|.++.+.
T Consensus       554 aRe~giTlivvThrpEv~~A----------L~PD~li~vg  583 (593)
T COG2401         554 AREAGITLIVVTHRPEVGNA----------LRPDTLILVG  583 (593)
T ss_pred             HHHhCCeEEEEecCHHHHhc----------cCCceeEEee
Confidence            88889999999999999886          5 67776654

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.36  E-value=1.9e-12  Score=124.59  Aligned_cols=142  Identities=14%  Similarity=0.080  Sum_probs=98.2

Q ss_pred             cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEEEecCCcccccc
Q 023563           52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVAVIKSNKDTRYG  121 (280)
Q Consensus        52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~~~~~~~~~~~~  121 (280)
                      -|.++||-.-- .+..++..++|+|++|....|+||||||||+|+ |+++|++.         ....+.|+||.+--  .
T Consensus       481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLf-RILggLWPvy~g~L~~P~~~~mFYIPQRPYm--s  557 (728)
T KOG0064|consen  481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLF-RILGGLWPVYNGLLSIPRPNNIFYIPQRPYM--S  557 (728)
T ss_pred             ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHH-HHHhccCcccCCeeecCCCcceEeccCCCcc--C
Confidence            47788887665 346789999999999999999999999999999 99999843         23346677765421  1


Q ss_pred             cceeee------------eccc----ccccccccCchHHHHHH-----------------------hhhhccCCCEEEEe
Q 023563          122 LDSIVT------------HDGV----KLPCCALTTLSSFRQKF-----------------------GSDAYDQVDVIGID  162 (280)
Q Consensus       122 ~~~v~~------------~~~~----~~~~~~~~~l~~~~~~~-----------------------a~aL~~~p~lLlLD  162 (280)
                      .+.+-.            +.+.    +...+..+.+.+++++-                       ||-+.++|++-+||
T Consensus       558 ~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLD  637 (728)
T KOG0064|consen  558 GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLD  637 (728)
T ss_pred             cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhh
Confidence            111100            0000    01112222233333222                       45678999999999


Q ss_pred             CcccHH--HHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          163 EAQFFE--DLYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       163 EP~~~~--~i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      |.|++-  |+-..+-+.++..|.+.+-+||....-.
T Consensus       638 EcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk  673 (728)
T KOG0064|consen  638 ECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWK  673 (728)
T ss_pred             hhhcccccchHHHHHHHHHhcCceEEEeecCccHHH
Confidence            998864  6777777787778999999999998765

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.33  E-value=1.9e-12  Score=122.87  Aligned_cols=58  Identities=33%  Similarity=0.326  Sum_probs=48.0

Q ss_pred             hhhhccCCCEEEEeCcccHHHH------HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 GSDAYDQVDVIGIDEAQFFEDL------YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~~i------~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      |.+++.+.+++++|||++.+|+      ..+++++++. +++||+|.||+....-          ++|-|.++-.
T Consensus       225 aa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~----------lsD~vhI~YG  288 (591)
T COG1245         225 AAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLDY----------LSDFVHILYG  288 (591)
T ss_pred             HHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHH----------hhheeEEEec
Confidence            4468899999999999988764      4577788876 8999999999998875          7888887654

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.30  E-value=5.6e-12  Score=126.39  Aligned_cols=63  Identities=22%  Similarity=0.197  Sum_probs=54.1

Q ss_pred             CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee------c-eecc
Q 023563          155 QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT------A-RCEF  221 (280)
Q Consensus       155 ~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~------~-~i~~  221 (280)
                      ..-+.||||||..+      .+++.|.+|.+. |-|||++.|+++.+.           .||.|+-|.      . .+++
T Consensus       843 g~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~-GnTViVIEHNLdVIk-----------~AD~IIDLGPeGG~~GG~iva  910 (935)
T COG0178         843 GKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIVIEHNLDVIK-----------TADWIIDLGPEGGDGGGEIVA  910 (935)
T ss_pred             CCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecccceEe-----------ecCEEEEcCCCCCCCCceEEE
Confidence            44899999997754      367888899886 999999999999886           799999983      3 7999


Q ss_pred             ccCcceee
Q 023563          222 CGKRAFFT  229 (280)
Q Consensus       222 ~g~~~~~~  229 (280)
                      .|+|+++.
T Consensus       911 ~GTPeeva  918 (935)
T COG0178         911 SGTPEEVA  918 (935)
T ss_pred             ecCHHHHH
Confidence            99999987

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.28  E-value=7.2e-12  Score=136.15  Aligned_cols=62  Identities=21%  Similarity=0.198  Sum_probs=54.0

Q ss_pred             CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee------c-eeccc
Q 023563          156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT------A-RCEFC  222 (280)
Q Consensus       156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~------~-~i~~~  222 (280)
                      +.+++|||||..+      .+++.|.++.+. |.|||++.||++.+.           .||.|+-|.      . ++++.
T Consensus      1721 ~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~-g~tvivieH~~~~i~-----------~aD~iidlgp~gG~~GG~iva~ 1788 (1809)
T PRK00635       1721 PTLFLLDEIATSLDNQQKSALLVQLRTLVSL-GHSVIYIDHDPALLK-----------QADYLIEMGPGSGKTGGKILFS 1788 (1809)
T ss_pred             CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHH-----------hCCEEEEcCCCcccCCCEEEEE
Confidence            6899999997754      377888889876 999999999999987           599999983      3 79999


Q ss_pred             cCcceee
Q 023563          223 GKRAFFT  229 (280)
Q Consensus       223 g~~~~~~  229 (280)
                      |+|+++.
T Consensus      1789 Gtp~~i~ 1795 (1809)
T PRK00635       1789 GPPKDIS 1795 (1809)
T ss_pred             eCHHHHh
Confidence            9999987

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.27  E-value=2.8e-11  Score=110.18  Aligned_cols=50  Identities=14%  Similarity=0.037  Sum_probs=41.6

Q ss_pred             CCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          155 QVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       155 ~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +|+++|+|||+..      ..+.+.++++.+  +.++|++||+++...           +||+++.|.+
T Consensus       192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~~~-----------~~d~~~~l~~  247 (276)
T cd03241         192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQVAA-----------MADNHFLVEK  247 (276)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHHHH-----------hcCcEEEEEE
Confidence            9999999999654      347778877754  789999999998653           8999999887

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.24  E-value=4.4e-11  Score=106.28  Aligned_cols=152  Identities=20%  Similarity=0.202  Sum_probs=87.0

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccc------ccceee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRY------GLDSIV  126 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~------~~~~v~  126 (280)
                      +.++++.+.+++.         +++|++++|.||||||||||..+.+.++...|..+.|+........      .++.-+
T Consensus         8 ~~~~~ld~~l~gg---------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~   78 (230)
T PRK08533          8 LSRDELHKRLGGG---------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDI   78 (230)
T ss_pred             EEEeeeehhhCCC---------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCch
Confidence            5577777777552         8999999999999999999954788877667777777764322111      011000


Q ss_pred             e----eccccc----ccc-cccCchHHHHHHhhh-hccCCCEEEEeCcccHH----------HHHHHHHHHHhhcCCEEE
Q 023563          127 T----HDGVKL----PCC-ALTTLSSFRQKFGSD-AYDQVDVIGIDEAQFFE----------DLYDFCREAADHDGKTVI  186 (280)
Q Consensus       127 ~----~~~~~~----~~~-~~~~l~~~~~~~a~a-L~~~p~lLlLDEP~~~~----------~i~~~l~~l~~~~g~tvi  186 (280)
                      .    ......    +.. ...+......+...+ -..+|+++++|||+...          +++++++.++++ |.|+ 
T Consensus        79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tv-  156 (230)
T PRK08533         79 NKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVI-  156 (230)
T ss_pred             HHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEE-
Confidence            0    000000    000 000011122211111 12589999999996533          467777777665 7755 


Q ss_pred             EEEechhHhhhccCCccccccccceEEEeec
Q 023563          187 VAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       187 ivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ++||+.......+  ...+-.+||-|+.|+.
T Consensus       157 i~t~~~~~~~~~~--~~~~~~~~DgvI~L~~  185 (230)
T PRK08533        157 ILTANPKELDESV--LTILRTAATMLIRLEV  185 (230)
T ss_pred             EEEeccccccccc--ceeEEEeeeEEEEEEE
Confidence            5567766443211  1233456888888886

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.22  E-value=2.2e-11  Score=112.62  Aligned_cols=140  Identities=16%  Similarity=0.095  Sum_probs=91.4

Q ss_pred             eeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccc---eeeeecccccccccccCchHHHHH
Q 023563           71 ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLD---SIVTHDGVKLPCCALTTLSSFRQK  147 (280)
Q Consensus        71 isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~~~~  147 (280)
                      +++.+..|+.++|+||+|||||||+ +.+.++......+..+...........   .++....  ...   ..-..+.+-
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll-~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~--~~~---~~~~~~~~~  210 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFL-KSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKG--GQG---LAKVTPKDL  210 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHH-HHHHccCCccccEEEEcCccccCCCCCCEEEEEecCC--CCC---cCccCHHHH
Confidence            5678899999999999999999999 989887655555544432211111100   1111100  000   111122333


Q ss_pred             HhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          148 FGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       148 ~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      ...+|-.+|++|++|||... +.+++++.+... +.+++.++|..+...           ..+|+..|.. +....|.+.
T Consensus       211 l~~~Lr~~pd~ii~gE~r~~-e~~~~l~a~~~g-~~~~i~T~Ha~~~~~-----------~~~Rl~~l~~~~~~~~g~~~  277 (308)
T TIGR02788       211 LQSCLRMRPDRIILGELRGD-EAFDFIRAVNTG-HPGSITTLHAGSPEE-----------AFEQLALMVKSSQAGLGLDF  277 (308)
T ss_pred             HHHHhcCCCCeEEEeccCCH-HHHHHHHHHhcC-CCeEEEEEeCCCHHH-----------HHHHHHHHhhccccccCCCH
Confidence            34567899999999999875 567777777642 345799999999554           6899988876 777777777


Q ss_pred             eee
Q 023563          227 FFT  229 (280)
Q Consensus       227 ~~~  229 (280)
                      +..
T Consensus       278 ~~~  280 (308)
T TIGR02788       278 AYI  280 (308)
T ss_pred             HHH
Confidence            665

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR01069 mutS2 MutS2 family protein

Probab=99.18  E-value=9.3e-11  Score=120.33  Aligned_cols=141  Identities=14%  Similarity=0.089  Sum_probs=77.9

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCc-eEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccc-ceeeeec
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSG-EIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGL-DSIVTHD  129 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~G-ei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~-~~v~~~~  129 (280)
                      .+.++++.+-+-...-.-.+|+++..| ++++|.||||+|||||+ +.+++..+....-.+++.......+. ..++...
T Consensus       295 ~i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlL-K~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i  373 (771)
T TIGR01069       295 KIILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTL-KTLGLLALMFQSGIPIPANEHSEIPYFEEIFADI  373 (771)
T ss_pred             CEEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHH-HHHHHHHHHHHhCCCccCCccccccchhheeeec
Confidence            467777655332111122478889888 89999999999999999 98888632111111222222111111 1111110


Q ss_pred             ccccccccccCchHHHH---HHhhhh--ccCCCEEEEeCcccH------HHH-HHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          130 GVKLPCCALTTLSSFRQ---KFGSDA--YDQVDVIGIDEAQFF------EDL-YDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       130 ~~~~~~~~~~~l~~~~~---~~a~aL--~~~p~lLlLDEP~~~------~~i-~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      +.  ......+++.+..   +.+..+  +.+|.++|+|||...      ..+ ..++..+.+. |.++|++||+.++..
T Consensus       374 ~~--~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~-g~~viitTH~~eL~~  449 (771)
T TIGR01069       374 GD--EQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQ-NAQVLITTHYKELKA  449 (771)
T ss_pred             Ch--HhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECChHHHHH
Confidence            00  0001112222221   112222  358999999999543      234 4566777664 999999999988754

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.12  E-value=7.3e-10  Score=90.71  Aligned_cols=135  Identities=18%  Similarity=0.131  Sum_probs=70.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCccccccc--------ceeeeeccccccccc-ccCchHHH-HHH
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNKDTRYGL--------DSIVTHDGVKLPCCA-LTTLSSFR-QKF  148 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~-~~~l~~~~-~~~  148 (280)
                      ++.|.||+|+||||++ ..+++. ...+..+.++..........        ...... ........ ........ ...
T Consensus         1 ~~~i~G~~G~GKT~l~-~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   78 (165)
T cd01120           1 LILVFGPTGSGKTTLA-LQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDN-LIIVFATADDPAAARLLSKAE   78 (165)
T ss_pred             CeeEeCCCCCCHHHHH-HHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhcccccc-EEEEEcCCCCCcHHHHHHHHH
Confidence            4789999999999999 666554 34567777776543321000        000000 00001111 11111111 112


Q ss_pred             hhhhccCCCEEEEeCcccH---------------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccC---Cccccccccc
Q 023563          149 GSDAYDQVDVIGIDEAQFF---------------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFG---SVIDIIPLAD  210 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~---------------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~---~~~~ll~~aD  210 (280)
                      +.+...+|+++++||++..               .+.+..+.+..++.+.++|+++|........++   ....+..+||
T Consensus        79 ~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~d  158 (165)
T cd01120          79 RLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGDPRLTRGAQNLEDIAD  158 (165)
T ss_pred             HHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccCcccccCccceeeecc
Confidence            3455679999999999632               122233333334459999999998865543221   1122344566


Q ss_pred             eEEEee
Q 023563          211 SVTKLT  216 (280)
Q Consensus       211 ~i~~L~  216 (280)
                      -++.++
T Consensus       159 ~~~~l~  164 (165)
T cd01120         159 TVIVLS  164 (165)
T ss_pred             eEEEEe
Confidence            666554

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK13695 putative NTPase; Provisional

Probab=99.09  E-value=5.2e-10  Score=94.76  Aligned_cols=59  Identities=22%  Similarity=0.213  Sum_probs=44.4

Q ss_pred             hhhccCCCEEEEeCccc--H--HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563          150 SDAYDQVDVIGIDEAQF--F--EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~--~--~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                      +..+.+|++|++|||..  .  ..+.+.+.++.+ .|.++|+++|+.....           ++|+|..+.+ ++.
T Consensus        91 ~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~-~~~~~i~v~h~~~~~~-----------~~~~i~~~~~~~i~  154 (174)
T PRK13695         91 ERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD-SEKPVIATLHRRSVHP-----------FVQEIKSRPGGRVY  154 (174)
T ss_pred             HhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh-CCCeEEEEECchhhHH-----------HHHHHhccCCcEEE
Confidence            34556999999999622  2  346788888875 4999999999954432           7999999998 653

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.08  E-value=5.6e-10  Score=107.74  Aligned_cols=146  Identities=20%  Similarity=0.175  Sum_probs=86.0

Q ss_pred             CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe-eEEEecCCccc-c-------------cccceeeee
Q 023563           64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR-NVAVIKSNKDT-R-------------YGLDSIVTH  128 (280)
Q Consensus        64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~-~i~~~~~~~~~-~-------------~~~~~v~~~  128 (280)
                      +..+++++ |++.+|++++|+|+||+|||||+ ++|.++..... .+....+.... .             ..+..+...
T Consensus       145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl-~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~  222 (438)
T PRK07721        145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLM-GMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS  222 (438)
T ss_pred             chhhhhee-eeecCCcEEEEECCCCCCHHHHH-HHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence            45689999 99999999999999999999999 99998754322 23332222110 0             001001000


Q ss_pred             cccccccccccCc----hHHHHHHhhhhccCCCEEEEe-----------------Cc--------ccHHHHHHHHHHHHh
Q 023563          129 DGVKLPCCALTTL----SSFRQKFGSDAYDQVDVIGID-----------------EA--------QFFEDLYDFCREAAD  179 (280)
Q Consensus       129 ~~~~~~~~~~~~l----~~~~~~~a~aL~~~p~lLlLD-----------------EP--------~~~~~i~~~l~~l~~  179 (280)
                      +.   +.......    ..+++.+. . -.+-=+|++|                 ||        ..+..+.++++++..
T Consensus       223 ~~---~~~~r~~~~~~a~~iAEyfr-~-~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~  297 (438)
T PRK07721        223 DQ---PALMRIKGAYTATAIAEYFR-D-QGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGT  297 (438)
T ss_pred             CC---CHHHHHHHHHHHHHHHHHHH-H-CCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcC
Confidence            00   00000000    00111110 0 0122233445                 76        234457778888763


Q ss_pred             -hcCC-----EEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          180 -HDGK-----TVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       180 -~~g~-----tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                       +.|.     ||++.+||+++.            +||++..+.+ +++.+++.++-
T Consensus       298 ~~~GsIT~~~TVlv~~hdm~e~------------i~d~v~~i~dG~Ivls~~la~~  341 (438)
T PRK07721        298 NASGSITAFYTVLVDGDDMNEP------------IADTVRGILDGHFVLDRQLANK  341 (438)
T ss_pred             CCCCCeeeEEEEEEECCCCCch------------hhhhEEEecCEEEEEeccHHHC
Confidence             2375     999999999953            9999999999 99999886543

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.01  E-value=1.5e-09  Score=96.13  Aligned_cols=139  Identities=19%  Similarity=0.223  Sum_probs=77.2

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccc--------ccc--ceeeeeccc-cccc------cc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTR--------YGL--DSIVTHDGV-KLPC------CA  137 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~--------~~~--~~v~~~~~~-~~~~------~~  137 (280)
                      +++|+++.|.|++|||||||...++.+....|..+.|+.......        +++  ...+..... ..+.      ..
T Consensus        22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~  101 (234)
T PRK06067         22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWN  101 (234)
T ss_pred             CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccC
Confidence            789999999999999999999444454445688888776543221        110  000000000 0000      00


Q ss_pred             ccCchHHHHHHhhhhc-cCCCEEEEeCcccHH------HHH---HHHHHHHhhcCCEEEEEEechhHhhhccCCcccccc
Q 023563          138 LTTLSSFRQKFGSDAY-DQVDVIGIDEAQFFE------DLY---DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIP  207 (280)
Q Consensus       138 ~~~l~~~~~~~a~aL~-~~p~lLlLDEP~~~~------~i~---~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~  207 (280)
                      ..+...+.......+- .+|+++++|||+...      .+.   +.++.+++. |.|+++++|+..+....   ...+..
T Consensus       102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~-g~tvllt~~~~~~~~~~---~~~~~~  177 (234)
T PRK06067        102 STLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDL-GKTILITLHPYAFSEEL---LSRIRS  177 (234)
T ss_pred             cchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcCCHHH---HHHHHh
Confidence            1122233333222222 399999999996432      233   335555654 89999999976542210   011234


Q ss_pred             ccceEEEeec
Q 023563          208 LADSVTKLTA  217 (280)
Q Consensus       208 ~aD~i~~L~~  217 (280)
                      ++|-++.|+.
T Consensus       178 l~DgvI~L~~  187 (234)
T PRK06067        178 ICDVYLKLRA  187 (234)
T ss_pred             heEEEEEEEe
Confidence            6787777765

>cd01131 PilT Pilus retraction ATPase PilT

Probab=99.00  E-value=1.4e-09  Score=94.43  Aligned_cols=107  Identities=21%  Similarity=0.199  Sum_probs=65.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCccccc-c-cceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNKDTRY-G-LDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ  155 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~  155 (280)
                      ++.|.||+||||||++ +.+.+...  .+..+..+........ . ...+.+.. .      -.+...+.+...++|..+
T Consensus         3 lilI~GptGSGKTTll-~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~-v------g~~~~~~~~~i~~aLr~~   74 (198)
T cd01131           3 LVLVTGPTGSGKSTTL-AAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQRE-V------GLDTLSFENALKAALRQD   74 (198)
T ss_pred             EEEEECCCCCCHHHHH-HHHHHHhhhcCCcEEEEEcCCccccccCccceeeecc-c------CCCccCHHHHHHHHhcCC
Confidence            6889999999999999 76666433  2334443332211110 0 01111110 0      011233445556778889


Q ss_pred             CCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          156 VDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       156 p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      |+++++|||.....+...+ +.+.. |..++.++|..+.+.
T Consensus        75 pd~ii~gEird~e~~~~~l-~~a~~-G~~v~~t~Ha~~~~~  113 (198)
T cd01131          75 PDVILVGEMRDLETIRLAL-TAAET-GHLVMSTLHTNSAAK  113 (198)
T ss_pred             cCEEEEcCCCCHHHHHHHH-HHHHc-CCEEEEEecCCcHHH
Confidence            9999999997665554444 45554 999999999988664

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.99  E-value=8.7e-10  Score=93.54  Aligned_cols=136  Identities=15%  Similarity=0.095  Sum_probs=76.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccc--------cccc--eeeeecccc-ccc--ccccC--ch--
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTR--------YGLD--SIVTHDGVK-LPC--CALTT--LS--  142 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~--------~~~~--~v~~~~~~~-~~~--~~~~~--l~--  142 (280)
                      ++.|.||.|+|||||..+.+......|..+.|+.-.....        .++.  .+....... ...  .....  ..  
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~   80 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR   80 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence            3679999999999999555555456677777775432211        1110  000000000 000  00000  00  


Q ss_pred             -HHHHHHh-hhhccCCCEEEEeCcccHH---------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccce
Q 023563          143 -SFRQKFG-SDAYDQVDVIGIDEAQFFE---------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADS  211 (280)
Q Consensus       143 -~~~~~~a-~aL~~~p~lLlLDEP~~~~---------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~  211 (280)
                       .+..... .....+|+++++|||+...         .+.+++..+++. |.|+|+++|+...... ......+..+||.
T Consensus        81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~-g~tvi~v~~~~~~~~~-~~~~~~~~~~aD~  158 (187)
T cd01124          81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF-GVTTLLTSEQSGLEGT-GFGGGDVEYLVDG  158 (187)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC-CCEEEEEeccccCCCc-ccCcCceeEeeeE
Confidence             1122222 2245699999999996432         356677777765 9999999998875211 0111234468999


Q ss_pred             EEEeec
Q 023563          212 VTKLTA  217 (280)
Q Consensus       212 i~~L~~  217 (280)
                      |+.|+.
T Consensus       159 ii~l~~  164 (187)
T cd01124         159 VIRLRL  164 (187)
T ss_pred             EEEEEE
Confidence            999986

A related protein is found in archaea.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.97  E-value=7.9e-10  Score=86.80  Aligned_cols=35  Identities=17%  Similarity=-0.025  Sum_probs=32.4

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      +.+|++++|++++|++++|+||||||||||+ +++.
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl-~~l~   36 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELA-LELI   36 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHH-HHhh
Confidence            5789999999999999999999999999999 7654

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=98.96  E-value=6.3e-09  Score=94.46  Aligned_cols=32  Identities=31%  Similarity=0.392  Sum_probs=25.3

Q ss_pred             eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      .+++.++++.+| +.+|+|||||||||++ ..|.
T Consensus        11 ~~~~~~~~~~~~-~~~i~G~NGsGKS~ll-~Ai~   42 (270)
T cd03242          11 NYAELELEFEPG-VTVLVGENAQGKTNLL-EAIS   42 (270)
T ss_pred             CcceeEEecCCC-eEEEECCCCCCHHHHH-HHHH
Confidence            345667888876 7899999999999999 5443

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.95  E-value=2.8e-09  Score=109.73  Aligned_cols=137  Identities=19%  Similarity=0.180  Sum_probs=73.3

Q ss_pred             eeeEee-CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccc-ceeeeecccccccccccCchHHHHH-
Q 023563           71 ASVSSP-SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGL-DSIVTHDGVKLPCCALTTLSSFRQK-  147 (280)
Q Consensus        71 isl~i~-~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~~~-  147 (280)
                      .++.+. .+.++.|.|||++||||+| +.++...+..+--.+++.......++ ..++...+.. . ....+++.+... 
T Consensus       319 ndi~l~~~~~~~iITGpN~gGKTt~l-ktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~-~-si~~~lStfS~~m  395 (782)
T PRK00409        319 KDISLGFDKTVLVITGPNTGGKTVTL-KTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDE-Q-SIEQSLSTFSGHM  395 (782)
T ss_pred             ceeEECCCceEEEEECCCCCCcHHHH-HHHHHHHHHHHhCCCcccCCCccccccceEEEecCCc-c-chhhchhHHHHHH
Confidence            344444 4578999999999999999 77765432211111222221111111 1222211110 0 001122222211 


Q ss_pred             --Hhhhh--ccCCCEEEEeCcccH------HHHH-HHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          148 --FGSDA--YDQVDVIGIDEAQFF------EDLY-DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       148 --~a~aL--~~~p~lLlLDEP~~~------~~i~-~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                        ....+  +.+|.++|+|||...      ..+. .++..+.+. |.++|++||+.+.+..          .+++..++.
T Consensus       396 ~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~-~~~vIitTH~~el~~~----------~~~~~~v~~  464 (782)
T PRK00409        396 TNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKR-GAKIIATTHYKELKAL----------MYNREGVEN  464 (782)
T ss_pred             HHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECChHHHHHH----------HhcCCCeEE
Confidence              11111  269999999999543      2343 456666654 9999999999998864          566655554


Q ss_pred             ceecc
Q 023563          217 ARCEF  221 (280)
Q Consensus       217 ~~i~~  221 (280)
                      ..+.+
T Consensus       465 ~~~~~  469 (782)
T PRK00409        465 ASVEF  469 (782)
T ss_pred             EEEEE
Confidence            44444

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.90  E-value=2.5e-09  Score=112.39  Aligned_cols=154  Identities=19%  Similarity=0.193  Sum_probs=99.8

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-----CCeeEEEecCCccc---ccccceeeeeccc-----
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-----KGRNVAVIKSNKDT---RYGLDSIVTHDGV-----  131 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-----~g~~i~~~~~~~~~---~~~~~~v~~~~~~-----  131 (280)
                      ..+|+|+|.-+++|+.+.++||.|||||||+ +.++|-..     .| .+.|-..+...   +..+.+..+++-.     
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttll-kal~g~~~~~~~~~~-~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT  205 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLL-KALAGKLDNFLKSSG-EITYNGHDLKEFVPKKTVAYNSEQDVHFPELT  205 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHH-HHHhCCCcccccCCC-ceeECCCcccccccCceEEeccccccccceeE
Confidence            4699999999999999999999999999999 88888421     11 23332221110   0011111111100     


Q ss_pred             ----------------ccccc--------------cccCchHHHHHH-------------------hhhhccCCCEEEEe
Q 023563          132 ----------------KLPCC--------------ALTTLSSFRQKF-------------------GSDAYDQVDVIGID  162 (280)
Q Consensus       132 ----------------~~~~~--------------~~~~l~~~~~~~-------------------a~aL~~~p~lLlLD  162 (280)
                                      ..+..              ...++++-++..                   |-.++.+++++.+|
T Consensus       206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D  285 (1391)
T KOG0065|consen  206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD  285 (1391)
T ss_pred             EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence                            00000              001111111100                   12588999999999


Q ss_pred             CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |++.++      ++.+.|+++++..+.|++++-|....         +++++-|.|++|.+ .++++|+.++..
T Consensus       286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~---------~~~~lFD~v~lL~eG~~iy~Gp~d~~~  350 (1391)
T KOG0065|consen  286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSP---------EIYDLFDDVILLSEGYQIYQGPRDEVL  350 (1391)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCCh---------HHHHhhhheeeeeccceEEeccHHHHH
Confidence            996654      57888888888778888888876542         44678999999999 999999988764

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.85  E-value=1.6e-08  Score=105.15  Aligned_cols=127  Identities=17%  Similarity=0.217  Sum_probs=73.7

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc-cceeeeecccccccccccCchH
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG-LDSIVTHDGVKLPCCALTTLSS  143 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~  143 (280)
                      ..+=+|+++. +.+.++.|.|||++||||+| +.++...+..+--.+++... ...+ +..++.+.+.....  ..+.+.
T Consensus       595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~l-r~v~l~~ilAq~G~~VPa~~-a~i~~~d~I~triga~d~i--~~g~ST  669 (854)
T PRK05399        595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYM-RQVALIVLLAQIGSFVPAES-ARIGIVDRIFTRIGASDDL--ASGRST  669 (854)
T ss_pred             ceEecceeeC-CCCcEEEEECCCCCCcHHHH-HHHHHHHHHHhcCCceeccc-eEecccCeeeeccCccccc--ccCccc
Confidence            4567788888 77789999999999999999 77655432211111222222 1111 12233322211110  122222


Q ss_pred             HHHHH---hhh--hccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          144 FRQKF---GSD--AYDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       144 ~~~~~---a~a--L~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      |....   +..  -+.++.++|+|||   |+..+    .+.+++.+.+..|.++|++||+.+...
T Consensus       670 F~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~  734 (854)
T PRK05399        670 FMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTE  734 (854)
T ss_pred             HHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHH
Confidence            22211   222  2569999999999   65544    466777777654689999999965543

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.82  E-value=9.5e-09  Score=87.96  Aligned_cols=42  Identities=24%  Similarity=0.290  Sum_probs=34.0

Q ss_pred             cCCCEEEEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          154 DQVDVIGIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       154 ~~p~lLlLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      ..--+.|||||.+      +..++..|+++++. |.-+||+||.+=...
T Consensus       145 ~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlA  192 (233)
T COG3910         145 NGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLA  192 (233)
T ss_pred             ccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhhee
Confidence            5778999999944      34678888899886 999999999987554

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.80  E-value=3e-08  Score=87.39  Aligned_cols=142  Identities=13%  Similarity=0.156  Sum_probs=71.8

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccc------cccceeeee---cccc--cc--------
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTR------YGLDSIVTH---DGVK--LP--------  134 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~------~~~~~v~~~---~~~~--~~--------  134 (280)
                      -+++|+++.|.||+|+|||||....+......|..+.|+.-.....      ..++..++.   ....  .+        
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~   95 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEKED   95 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEEEcccccccc
Confidence            3889999999999999999999433332233566666665322110      001111110   0000  00        


Q ss_pred             cc--cccCchHHHHHHh-----------hhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCC
Q 023563          135 CC--ALTTLSSFRQKFG-----------SDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGS  201 (280)
Q Consensus       135 ~~--~~~~l~~~~~~~a-----------~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~  201 (280)
                      .+  ...+..++..+..           +.++-.+..+++|||....++...+.++.++.|+|+|+++|........+. 
T Consensus        96 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~-  174 (229)
T TIGR03881        96 EWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFG-  174 (229)
T ss_pred             ccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcc-
Confidence            00  0112233332221           122333444444555433344444555545569999999996542211111 


Q ss_pred             ccccccccceEEEeec
Q 023563          202 VIDIIPLADSVTKLTA  217 (280)
Q Consensus       202 ~~~ll~~aD~i~~L~~  217 (280)
                       ..+-.+||.|+.|+.
T Consensus       175 -~~~~~l~D~vI~L~~  189 (229)
T TIGR03881       175 -FGIEHVADGIIRFRK  189 (229)
T ss_pred             -cceEEEEeEEEEEEE
Confidence             233457999999886

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.80  E-value=8.8e-08  Score=83.79  Aligned_cols=52  Identities=19%  Similarity=0.273  Sum_probs=35.7

Q ss_pred             ccCCCEEEEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          153 YDQVDVIGIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       153 ~~~p~lLlLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ....+++|||||..      +..+.++|+++.+  +.-+|++||+.....           .||+.+.+..
T Consensus       156 ~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~~~~~~-----------~a~~~~~v~~  213 (220)
T PF02463_consen  156 YKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIITTHNPEMFE-----------DADKLIGVTM  213 (220)
T ss_dssp             CS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S-HHHHT-----------T-SEEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccc--ccccccccccccccc-----------cccccccccc
Confidence            46889999999944      3457778887754  578999999998886           6888877653

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.80  E-value=2.7e-08  Score=88.72  Aligned_cols=129  Identities=20%  Similarity=0.196  Sum_probs=65.7

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHH
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSF  144 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~  144 (280)
                      ..+-+|+.+.-....++.|.|||.+||||++ |.++-..+..+--.+++.....-..+..++.+.+...  ....+.+.+
T Consensus        30 ~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~l-k~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d--~~~~~~S~F  106 (235)
T PF00488_consen   30 KFVPNDIELSNNKSRIIIITGPNMSGKSTFL-KQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDD--SIESGLSTF  106 (235)
T ss_dssp             SC--EEEEESSSSSSEEEEESSTTSSHHHHH-HHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES-----SSTTSSSHH
T ss_pred             ceecceeecCCCceeEEEEeCCCccchhhHH-HHHHHHhhhhhcCceeeecccccccccEEEeeccccc--ccccccccH
Confidence            3456676666555569999999999999999 7665432211110122222111111112222211110  111233333


Q ss_pred             HHHH---hh--hhccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          145 RQKF---GS--DAYDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       145 ~~~~---a~--aL~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      ....   ..  ..+.+-.++|+||.   |+..+    ...+++.+.++.+..++++||+.+...
T Consensus       107 ~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~  170 (235)
T PF00488_consen  107 MAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE  170 (235)
T ss_dssp             HHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred             HHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence            3322   11  12457889999999   44433    456667776634888999999998654

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.78  E-value=3.1e-08  Score=85.01  Aligned_cols=119  Identities=14%  Similarity=0.042  Sum_probs=65.9

Q ss_pred             eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHh
Q 023563           70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFG  149 (280)
Q Consensus        70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a  149 (280)
                      =+.+.+++|+.++|+||||||||||+ +.+.++......+..+..............+... .........-..+.+...
T Consensus        17 ~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~   94 (186)
T cd01130          17 YLWLAVEARKNILISGGTGSGKTTLL-NALLAFIPPDERIITIEDTAELQLPHPNWVRLVT-RPGNVEGSGEVTMADLLR   94 (186)
T ss_pred             HHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEECCccccCCCCCCEEEEEE-ecCCCCCCCccCHHHHHH
Confidence            34577899999999999999999999 9998875544444333222111111000111000 000000001111222222


Q ss_pred             hhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCE-EEEEEechh
Q 023563          150 SDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKT-VIVAGLDGD  193 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~t-viivtHdl~  193 (280)
                      .++-.+|++++++|-.... .++.++.. . .|.. ++.+-|--+
T Consensus        95 ~~lR~~pd~i~igEir~~e-a~~~~~a~-~-tGh~g~~~T~Ha~s  136 (186)
T cd01130          95 SALRMRPDRIIVGEVRGGE-ALDLLQAM-N-TGHPGGMTTIHANS  136 (186)
T ss_pred             HHhccCCCEEEEEccCcHH-HHHHHHHH-h-cCCCCceeeecCCC
Confidence            3455799999999997654 45555543 4 3777 777777444

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR00416 sms DNA repair protein RadA

Probab=98.70  E-value=8.9e-08  Score=93.18  Aligned_cols=135  Identities=15%  Similarity=0.086  Sum_probs=79.9

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccc------ccceeeeecccccccccccCchHHHHH
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRY------GLDSIVTHDGVKLPCCALTTLSSFRQK  147 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~l~~~~~~  147 (280)
                      =+++|+++.|.|++|+|||||++.++..+...|.++.|+........      .++...+  ...  .....++..+...
T Consensus        90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~--~l~--~~~e~~~~~I~~~  165 (454)
T TIGR00416        90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEP--NLY--VLSETNWEQICAN  165 (454)
T ss_pred             CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChH--HeE--EcCCCCHHHHHHH
Confidence            48999999999999999999995554555555667777754322110      0110000  000  0111223333322


Q ss_pred             HhhhhccCCCEEEEeCccc------------HH---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceE
Q 023563          148 FGSDAYDQVDVIGIDEAQF------------FE---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSV  212 (280)
Q Consensus       148 ~a~aL~~~p~lLlLDEP~~------------~~---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i  212 (280)
                      .   --.+|+++++|.-++            ..   ++...|.+++++.|.|+++++|....-  .+.+...+-.++|.|
T Consensus       166 i---~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg--~~aG~~~le~lvD~V  240 (454)
T TIGR00416       166 I---EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEG--SIAGPKVLEHMVDTV  240 (454)
T ss_pred             H---HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCC--ccCCcccEeeeceEE
Confidence            1   124899999997632            11   234456777777899999999976531  112222234579999


Q ss_pred             EEeec
Q 023563          213 TKLTA  217 (280)
Q Consensus       213 ~~L~~  217 (280)
                      +.|+.
T Consensus       241 I~Le~  245 (454)
T TIGR00416       241 LYFEG  245 (454)
T ss_pred             EEEec
Confidence            99875

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.65  E-value=3.2e-08  Score=103.41  Aligned_cols=69  Identities=20%  Similarity=0.219  Sum_probs=59.9

Q ss_pred             hhhhccCC--CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563          149 GSDAYDQV--DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL-----  215 (280)
Q Consensus       149 a~aL~~~p--~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L-----  215 (280)
                      |++|+.+|  +++|||||++.+      .++++|++++++ |.|||+|+||++++.           .||+|++|     
T Consensus       501 A~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~-G~TVIvVeH~~~~i~-----------~aD~vi~LgpgaG  568 (943)
T PRK00349        501 ATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDL-GNTLIVVEHDEDTIR-----------AADYIVDIGPGAG  568 (943)
T ss_pred             HHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-----------hCCEEEEeccccC
Confidence            56788886  999999997654      588999999775 999999999999875           69999999     


Q ss_pred             -ec-eeccccCcceee
Q 023563          216 -TA-RCEFCGKRAFFT  229 (280)
Q Consensus       216 -~~-~i~~~g~~~~~~  229 (280)
                       ++ ++++.|+++++.
T Consensus       569 ~~~G~iv~~g~~~e~~  584 (943)
T PRK00349        569 VHGGEVVASGTPEEIM  584 (943)
T ss_pred             CCCCEEeeccCHHHHh
Confidence             88 999999998875

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.64  E-value=1.1e-07  Score=89.47  Aligned_cols=112  Identities=19%  Similarity=0.181  Sum_probs=66.8

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCccccc-ccceeeeecccccccccccCchHHHHHHhhhh
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNKDTRY-GLDSIVTHDGVKLPCCALTTLSSFRQKFGSDA  152 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL  152 (280)
                      .++.++.|.||+||||||++ +.+.+...  .+..+..+........ .....+.+..     .. .....+.+....+|
T Consensus       120 ~~~g~ili~G~tGSGKTT~l-~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~e-----vg-~~~~~~~~~l~~~l  192 (343)
T TIGR01420       120 RPRGLILVTGPTGSGKSTTL-ASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQRE-----VG-LDTLSFANALRAAL  192 (343)
T ss_pred             hcCcEEEEECCCCCCHHHHH-HHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccc-----cC-CCCcCHHHHHHHhh
Confidence            56789999999999999999 77766432  2345544433222111 0001111100     00 11123445555678


Q ss_pred             ccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          153 YDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      -++|++|++||+.-.......+. .+. .|..++.+.|-.+...
T Consensus       193 r~~pd~i~vgEird~~~~~~~l~-aa~-tGh~v~~T~Ha~~~~~  234 (343)
T TIGR01420       193 REDPDVILIGEMRDLETVELALT-AAE-TGHLVFGTLHTNSAAQ  234 (343)
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHH-HHH-cCCcEEEEEcCCCHHH
Confidence            89999999999975544433343 444 4999999999866553

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.64  E-value=3.7e-08  Score=102.77  Aligned_cols=69  Identities=22%  Similarity=0.210  Sum_probs=59.5

Q ss_pred             hhhhccCC--CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563          149 GSDAYDQV--DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL-----  215 (280)
Q Consensus       149 a~aL~~~p--~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L-----  215 (280)
                      |++|+.+|  +++|||||++.+      .++++|++++++ |.|||+|+||++++.           +||+|++|     
T Consensus       499 A~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~-G~TVIvVeHd~~~i~-----------~aD~vi~LgpgaG  566 (924)
T TIGR00630       499 ATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDL-GNTVIVVEHDEETIR-----------AADYVIDIGPGAG  566 (924)
T ss_pred             HHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHh-----------hCCEEEEeccccc
Confidence            56788775  899999997654      588999999876 999999999999875           79999999     


Q ss_pred             -ec-eeccccCcceee
Q 023563          216 -TA-RCEFCGKRAFFT  229 (280)
Q Consensus       216 -~~-~i~~~g~~~~~~  229 (280)
                       ++ ++++.|+++++.
T Consensus       567 ~~~G~Iv~~g~~~el~  582 (924)
T TIGR00630       567 IHGGEVVASGTPEEIL  582 (924)
T ss_pred             CCCCEEeeccCHHHHh
Confidence             77 899999998875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.63  E-value=1.5e-07  Score=89.42  Aligned_cols=147  Identities=20%  Similarity=0.152  Sum_probs=87.5

Q ss_pred             EEeCC-eeeeEeeeeEeeCce-----EEEEEcCCCCcHHHHHHHHHhcchh-------CCeeEEEecCCcccccccc--e
Q 023563           60 FSLQN-RNLHSEASVSSPSGE-----IHVIVGPMFAGKTTTLLRRIQAETQ-------KGRNVAVIKSNKDTRYGLD--S  124 (280)
Q Consensus        60 ~~y~~-~~vl~~isl~i~~Ge-----i~~liGpNGsGKSTLl~~~l~gl~~-------~g~~i~~~~~~~~~~~~~~--~  124 (280)
                      +.|.+ +.-+-++.|.|..|+     ++..+|.||.|||||+ ++++|...       .--+++|.+|.....+...  .
T Consensus       343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi-~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~  421 (592)
T KOG0063|consen  343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFI-RMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQ  421 (592)
T ss_pred             eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHH-HHHhcCCCCCccCcccccceeccccccCccccchHHH
Confidence            44543 556788889999885     7899999999999999 99998532       1225666666544322110  0


Q ss_pred             eee--------ecccccccccccCchH------------HHHHHhh--hhccCCCEEEEeCcccHHH------HHHHHHH
Q 023563          125 IVT--------HDGVKLPCCALTTLSS------------FRQKFGS--DAYDQVDVIGIDEAQFFED------LYDFCRE  176 (280)
Q Consensus       125 v~~--------~~~~~~~~~~~~~l~~------------~~~~~a~--aL~~~p~lLlLDEP~~~~~------i~~~l~~  176 (280)
                      ++.        +.....+.+....+++            -+++.|.  .|-..+++.+.|||...++      .-..+++
T Consensus       422 ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikR  501 (592)
T KOG0063|consen  422 LLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKR  501 (592)
T ss_pred             HHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHH
Confidence            000        0000000000011111            1222233  3456899999999954432      2233444


Q ss_pred             HHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          177 AADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       177 l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ..=+..+|-.+|.||.-.+.-          +|||+++...
T Consensus       502 filhakktafvVEhdfImaTY----------ladrvivf~G  532 (592)
T KOG0063|consen  502 FILHAKKTAFVVEHDFIMATY----------LADRVIVFEG  532 (592)
T ss_pred             HHHhccchhhhhhhHHHHHHh----------hcceeEEEec
Confidence            433348899999999988875          7999988654

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.59  E-value=2.2e-08  Score=96.76  Aligned_cols=31  Identities=19%  Similarity=0.267  Sum_probs=30.0

Q ss_pred             eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHH
Q 023563           66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLR   97 (280)
Q Consensus        66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~   97 (280)
                      .+|++||++|++||+++|+||||||||||+ +
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLL-r   50 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEIL-A   50 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHH-h
Confidence            589999999999999999999999999999 7

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.57  E-value=5.1e-07  Score=81.45  Aligned_cols=152  Identities=19%  Similarity=0.147  Sum_probs=87.6

Q ss_pred             eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCccc-----cc-----cccee-e------e
Q 023563           66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKDT-----RY-----GLDSI-V------T  127 (280)
Q Consensus        66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~~-----~~-----~~~~v-~------~  127 (280)
                      ..|+++.--+.+|+++.|.||+|+|||||+..++..+... |..+.|+.-....     +.     ++..- .      .
T Consensus        18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~   97 (271)
T cd01122          18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHLPDTVFIYT   97 (271)
T ss_pred             ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCcccCCcccccc
Confidence            4567776779999999999999999999994443433344 7777777543211     00     00000 0      0


Q ss_pred             ------------ecccc--cccccccCchHHHHHHhhh-hccCCCEEEEeCcccH--------------HHHHHHHHHHH
Q 023563          128 ------------HDGVK--LPCCALTTLSSFRQKFGSD-AYDQVDVIGIDEAQFF--------------EDLYDFCREAA  178 (280)
Q Consensus       128 ------------~~~~~--~~~~~~~~l~~~~~~~a~a-L~~~p~lLlLDEP~~~--------------~~i~~~l~~l~  178 (280)
                                  .....  .......++..+....... .-.+|+++++|..+..              .+++..|++++
T Consensus        98 ~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la  177 (271)
T cd01122          98 LEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFA  177 (271)
T ss_pred             HHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHH
Confidence                        00000  0000011223333322111 1248999999998221              13556678888


Q ss_pred             hhcCCEEEEEEechhHhhh------------ccCCccccccccceEEEeec
Q 023563          179 DHDGKTVIVAGLDGDYLRR------------SFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       179 ~~~g~tviivtHdl~~~~~------------~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ++.|+||++++|-......            -+.+...+-..||-|+.|..
T Consensus       178 ~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r  228 (271)
T cd01122         178 TEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALER  228 (271)
T ss_pred             HHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEe
Confidence            8889999999985432211            13334456678899998876

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>TIGR00767 rho transcription termination factor Rho

Probab=98.55  E-value=3.3e-07  Score=87.26  Aligned_cols=51  Identities=25%  Similarity=0.167  Sum_probs=45.0

Q ss_pred             ccEEEcCceEEeCC-eeeeE-----------eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           51 SMVSPRPPLFSLQN-RNLHS-----------EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        51 ~~l~~~~ls~~y~~-~~vl~-----------~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .-+.++||++.|.+ +.+|+           |+++.|.+|+.++|+||.|+|||||+ +.|...
T Consensus       129 ~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~-~~i~~~  191 (415)
T TIGR00767       129 NRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLL-QKIAQA  191 (415)
T ss_pred             CCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHH-HHHHHh
Confidence            35899999999954 56897           99999999999999999999999999 766653

Members of this family differ in the specificity of RNA binding.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.54  E-value=5.8e-07  Score=70.47  Aligned_cols=26  Identities=46%  Similarity=0.630  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      .|..+.|+||+|+||||++ +.++...
T Consensus         1 ~~~~~~l~G~~G~GKTtl~-~~l~~~~   26 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLA-RALAREL   26 (148)
T ss_pred             CCCEEEEECCCCCcHHHHH-HHHHhcc
Confidence            3678999999999999999 7776643

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.53  E-value=4.9e-07  Score=85.83  Aligned_cols=135  Identities=16%  Similarity=0.123  Sum_probs=78.7

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccc------ccceeeeecccccccccccCchHHHHH
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRY------GLDSIVTHDGVKLPCCALTTLSSFRQK  147 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~l~~~~~~  147 (280)
                      =+.+|+++.|.|++|+|||||++.+...+...+.++.|+........      .++...  +...  .....++..+.+.
T Consensus        78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~--~~l~--l~~e~~le~I~~~  153 (372)
T cd01121          78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGIST--ENLY--LLAETNLEDILAS  153 (372)
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCc--ccEE--EEccCcHHHHHHH
Confidence            38899999999999999999994444444445667777654321110      011000  0100  0111233333332


Q ss_pred             HhhhhccCCCEEEEeCcccH------------H---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceE
Q 023563          148 FGSDAYDQVDVIGIDEAQFF------------E---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSV  212 (280)
Q Consensus       148 ~a~aL~~~p~lLlLDEP~~~------------~---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i  212 (280)
                      .   -..+|+++++|+-++.            .   ++...|.+++++.|+++++++|-...-.  +.+-..+-.++|.|
T Consensus       154 i---~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~--~aG~~~leh~vD~V  228 (372)
T cd01121         154 I---EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGS--IAGPKVLEHMVDTV  228 (372)
T ss_pred             H---HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCc--ccCcccchhhceEE
Confidence            2   1358999999997321            2   2345566777778999999999544211  22223344578988


Q ss_pred             EEeec
Q 023563          213 TKLTA  217 (280)
Q Consensus       213 ~~L~~  217 (280)
                      +.++.
T Consensus       229 i~le~  233 (372)
T cd01121         229 LYFEG  233 (372)
T ss_pred             EEEEc
Confidence            88865

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.47  E-value=4e-07  Score=89.33  Aligned_cols=140  Identities=11%  Similarity=0.079  Sum_probs=80.6

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHh-cchhCCeeEEEecCCccc---c---cccceeee----ecccc----------c
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQ-AETQKGRNVAVIKSNKDT---R---YGLDSIVT----HDGVK----------L  133 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~-gl~~~g~~i~~~~~~~~~---~---~~~~~v~~----~~~~~----------~  133 (280)
                      +++|.++.|.||+|||||||.+..+. |....|.+..|+.-....   .   ..++..++    .....          .
T Consensus        18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~~~   97 (484)
T TIGR02655        18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPEGQ   97 (484)
T ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhccc
Confidence            78999999999999999999954443 444435665555432111   0   00111110    00000          0


Q ss_pred             ccccccCchHHHHHHhhhhc-cCCCEEEEe--Cc---------ccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCC
Q 023563          134 PCCALTTLSSFRQKFGSDAY-DQVDVIGID--EA---------QFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGS  201 (280)
Q Consensus       134 ~~~~~~~l~~~~~~~a~aL~-~~p~lLlLD--EP---------~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~  201 (280)
                      ......++..+.++...++- .+++.+++|  -+         ..+..++++++.+++. |+|+|+++|+.+..... . 
T Consensus        98 ~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~-g~TvLLtsh~~~~~~~~-~-  174 (484)
T TIGR02655        98 DVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQI-GVTTVMTTERIEEYGPI-A-  174 (484)
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHC-CCEEEEEecCccccccc-c-
Confidence            01122345555555544432 378888888  22         2345677888888764 99999999998753210 0 


Q ss_pred             cccc-ccccceEEEeec
Q 023563          202 VIDI-IPLADSVTKLTA  217 (280)
Q Consensus       202 ~~~l-l~~aD~i~~L~~  217 (280)
                      -..+ -.+||.|+.|+.
T Consensus       175 ~~~~~e~laDgVI~L~~  191 (484)
T TIGR02655       175 RYGVEEFVSDNVVILRN  191 (484)
T ss_pred             cCCceeEeeeeEEEEEE
Confidence            0011 347999999986

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=98.45  E-value=9.2e-07  Score=91.94  Aligned_cols=127  Identities=14%  Similarity=0.153  Sum_probs=70.6

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc-cceeeeecccccccccccCchH
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG-LDSIVTHDGVKLPCCALTTLSS  143 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~  143 (280)
                      ..+=+|+++. ..+.++.|.|||.+||||+| |.++-+.+..+--.+++... ...+ +..++.+.+.....  ..+.+.
T Consensus       580 ~~VpNdi~l~-~~~~~~iITGPNmgGKSt~l-rqvali~imAq~G~~VPA~~-a~i~~~D~Iftrig~~d~i--~~g~ST  654 (840)
T TIGR01070       580 PFVPNDLEMA-HNRRMLLITGPNMGGKSTYM-RQTALIALLAQIGSFVPAES-AELPLFDRIFTRIGASDDL--ASGRST  654 (840)
T ss_pred             CeEeeeeecC-CCccEEEEECCCCCCchHHH-HHHHHHHHHHhcCCCccchh-eEeccccEEEEecCcccch--hcCcch
Confidence            3456677776 44568999999999999999 76654332221111223222 1222 22333332211110  122222


Q ss_pred             HHHHH---hh--hhccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          144 FRQKF---GS--DAYDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       144 ~~~~~---a~--aL~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      |....   +.  .-+.++.++|+||+   |+..+    .+.++..+.+..|..++++||..+...
T Consensus       655 F~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~  719 (840)
T TIGR01070       655 FMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA  719 (840)
T ss_pred             HHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence            22211   11  13578999999999   55443    344555666535889999999987664

>PRK09183 transposase/IS protein; Provisional

Probab=98.44  E-value=2.6e-07  Score=83.54  Aligned_cols=44  Identities=25%  Similarity=0.209  Sum_probs=35.0

Q ss_pred             eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEe
Q 023563           67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVI  112 (280)
Q Consensus        67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~  112 (280)
                      .|.+++| +++|+.+.|+||+|+|||+|+ ..++.. ...|..+.++
T Consensus        92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa-~al~~~a~~~G~~v~~~  136 (259)
T PRK09183         92 SLRSLSF-IERNENIVLLGPSGVGKTHLA-IALGYEAVRAGIKVRFT  136 (259)
T ss_pred             HHhcCCc-hhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEE
Confidence            4778888 999999999999999999999 777543 3355565554

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.44  E-value=3.4e-06  Score=87.73  Aligned_cols=70  Identities=14%  Similarity=0.070  Sum_probs=52.2

Q ss_pred             hccCCCEEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563          152 AYDQVDVIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       152 L~~~p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      +..+|.++++|||..       ...+.+.++++++. |.+++++||+++.+.+ -+....++..|++.++|.+ ++...+
T Consensus       649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~-~~~vil~Tq~~~d~~~-s~~a~~i~~~~~t~i~L~n~~a~~~~  726 (818)
T PRK13830        649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA-NCAVVLATQSISDAER-SGIIDVLKESCPTKICLPNGAAREPG  726 (818)
T ss_pred             cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHhc-CchHHHHHhcCCeEEECCCccccccc
Confidence            467999999999943       33577888888765 9999999999998853 1233345568999999987 654433

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.40  E-value=5.4e-07  Score=87.24  Aligned_cols=38  Identities=21%  Similarity=0.099  Sum_probs=35.0

Q ss_pred             CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      +..+++++ |++.+|++++|+|+||+|||||+ ++|.+..
T Consensus       150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl-~~I~~~~  187 (440)
T TIGR01026       150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLL-GMIARNT  187 (440)
T ss_pred             eeeeeeec-cccCCCcEEEEECCCCCCHHHHH-HHHhCCC
Confidence            46789999 99999999999999999999999 9998864

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.40  E-value=6.8e-07  Score=87.30  Aligned_cols=49  Identities=24%  Similarity=0.440  Sum_probs=38.6

Q ss_pred             eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--hCC-eeEEEecCCc
Q 023563           67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--QKG-RNVAVIKSNK  116 (280)
Q Consensus        67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--~~g-~~i~~~~~~~  116 (280)
                      ++++.++.+++|.+++|+||||+||||++ ..|++..  ..| .++.++..+.
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTi-aKLA~~~~~~~G~~kV~LI~~Dt  296 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTT-AKLAARCVMRHGASKVALLTTDS  296 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHH-HHHHHHHHHhcCCCeEEEEeCCc
Confidence            56677888899999999999999999999 6677653  233 4788777654

>cd01394 radB RadB

Probab=98.39  E-value=1.2e-06  Score=76.59  Aligned_cols=140  Identities=16%  Similarity=0.214  Sum_probs=73.9

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeee------cccccccccccCchHHH---
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTH------DGVKLPCCALTTLSSFR---  145 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~l~~~~---  145 (280)
                      +++|+++.|.|++|||||||.+.++......|.++.|+.-.......+..+...      .....  ....+..++.   
T Consensus        16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   93 (218)
T cd01394          16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIV--FEPMDFNEQGRAI   93 (218)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEE--EeCCCHHHHHHHH
Confidence            789999999999999999999554444445577777774322110000000000      00000  0001112221   


Q ss_pred             HHHhhhhccCCCEEEEeCcccH---------------HHH---HHHHHHHHhhcCCEEEEEEechhHhhh----ccCCcc
Q 023563          146 QKFGSDAYDQVDVIGIDEAQFF---------------EDL---YDFCREAADHDGKTVIVAGLDGDYLRR----SFGSVI  203 (280)
Q Consensus       146 ~~~a~aL~~~p~lLlLDEP~~~---------------~~i---~~~l~~l~~~~g~tviivtHdl~~~~~----~~~~~~  203 (280)
                      ......+-.+++++++|-.+..               .++   +..|+.++++.++++|++.|-......    ..++ .
T Consensus        94 ~~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g-~  172 (218)
T cd01394          94 QETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGG-H  172 (218)
T ss_pred             HHHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCC-c
Confidence            1221112235999999987321               122   334567777789999999985422110    0000 1


Q ss_pred             ccccccceEEEeec
Q 023563          204 DIIPLADSVTKLTA  217 (280)
Q Consensus       204 ~ll~~aD~i~~L~~  217 (280)
                      .+-.++|.++.|+.
T Consensus       173 ~~~~~~d~~i~l~~  186 (218)
T cd01394         173 TLEHWSKVILRLEK  186 (218)
T ss_pred             chhcceeEEEEEEE
Confidence            12346788888875

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=98.39  E-value=1.8e-06  Score=75.92  Aligned_cols=141  Identities=19%  Similarity=0.178  Sum_probs=75.1

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccc--------cc--ceeeeecccccccccc----c
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRY--------GL--DSIVTHDGVKLPCCAL----T  139 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~--------~~--~~v~~~~~~~~~~~~~----~  139 (280)
                      -+++|+++.|.|+.|+|||++....+......|..+.|+.-......        +.  .....+ .........    .
T Consensus        12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~   90 (224)
T TIGR03880        12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDK-SLYIVRLDPSDFKT   90 (224)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhC-CeEEEecCHHHHHh
Confidence            37899999999999999999985555444445777777754332210        00  000000 000000000    0


Q ss_pred             CchHHHHHHhhhh-ccCCCEEEEeCcc-----------cHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCcccccc
Q 023563          140 TLSSFRQKFGSDA-YDQVDVIGIDEAQ-----------FFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIP  207 (280)
Q Consensus       140 ~l~~~~~~~a~aL-~~~p~lLlLDEP~-----------~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~  207 (280)
                      .+..+.......+ -..++++++|=.+           .+..+.++++.+++. |.|+++++|....-.. -.....+-.
T Consensus        91 ~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~-~~tvll~s~~~~~~~~-~~~~~~~~~  168 (224)
T TIGR03880        91 SLNRIKNELPILIKELGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRET-GVTTILTSEADKTNVF-ASKYGLIEY  168 (224)
T ss_pred             hHHHHHHHHHHHHHHhCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhC-CCEEEEEEcccCCCCC-ccCCCceEE
Confidence            0112222111111 1368888899532           123467777777664 9999999996421000 000111345


Q ss_pred             ccceEEEeec
Q 023563          208 LADSVTKLTA  217 (280)
Q Consensus       208 ~aD~i~~L~~  217 (280)
                      +||.|++|+.
T Consensus       169 l~D~vI~L~~  178 (224)
T TIGR03880       169 LADGVIILKY  178 (224)
T ss_pred             EEeEEEEEee
Confidence            8999999964

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK11823 DNA repair protein RadA; Provisional

Probab=98.38  E-value=1.7e-06  Score=84.14  Aligned_cols=136  Identities=18%  Similarity=0.159  Sum_probs=75.6

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc---ccee-eeecccccccccccCchHHHHHHh
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG---LDSI-VTHDGVKLPCCALTTLSSFRQKFG  149 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~---~~~v-~~~~~~~~~~~~~~~l~~~~~~~a  149 (280)
                      -+++|+++.|.|+.|+|||||++.+.......+.++.|+........-   ...+ +..+...  .....++..+.+.. 
T Consensus        76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~--~~~e~~l~~i~~~i-  152 (446)
T PRK11823         76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLY--LLAETNLEAILATI-  152 (446)
T ss_pred             CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEE--EeCCCCHHHHHHHH-
Confidence            478999999999999999999944444333456677776543221100   0000 0000000  01112233333322 


Q ss_pred             hhhccCCCEEEEeCcccH------------H---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEE
Q 023563          150 SDAYDQVDVIGIDEAQFF------------E---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTK  214 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~------------~---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~  214 (280)
                        --.+|+++++|+.++.            .   ++...|.+++++.|.++++++|-...-.  +.+-..+-.++|.++.
T Consensus       153 --~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~--~ag~~~lehlvD~Vi~  228 (446)
T PRK11823        153 --EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGA--IAGPRVLEHMVDTVLY  228 (446)
T ss_pred             --HhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCC--cCCcchhhhhCeEEEE
Confidence              1248999999998421            1   2344567777778999999999533210  1111122346888887


Q ss_pred             ee
Q 023563          215 LT  216 (280)
Q Consensus       215 L~  216 (280)
                      +.
T Consensus       229 le  230 (446)
T PRK11823        229 FE  230 (446)
T ss_pred             EE
Confidence            75

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.38  E-value=2.7e-06  Score=82.05  Aligned_cols=140  Identities=13%  Similarity=0.106  Sum_probs=78.0

Q ss_pred             cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe-eEEEecCCccc-ccccceeeee
Q 023563           52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR-NVAVIKSNKDT-RYGLDSIVTH  128 (280)
Q Consensus        52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~-~i~~~~~~~~~-~~~~~~v~~~  128 (280)
                      .++-+.++..|. +..+++++ |.+.+|+.++|+|+||+|||||+ ++|++...... .+..+.+.... ...+......
T Consensus       130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl-~~Ia~~~~~~~gvI~~iGerg~ev~e~~~~~l~~  207 (432)
T PRK06793        130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLL-GMIAKNAKADINVISLVGERGREVKDFIRKELGE  207 (432)
T ss_pred             chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHH-HHHhccCCCCeEEEEeCCCCcccHHHHHHHHhhh
Confidence            466777887775 45688885 99999999999999999999999 98988754332 33333333111 0000000101


Q ss_pred             ccccccc--ccccCch---HH-HHHHhhhh------ccCCCEEEEeCcccHHHHHHHHHHHHhh---cCCEEEEEEechh
Q 023563          129 DGVKLPC--CALTTLS---SF-RQKFGSDA------YDQVDVIGIDEAQFFEDLYDFCREAADH---DGKTVIVAGLDGD  193 (280)
Q Consensus       129 ~~~~~~~--~~~~~l~---~~-~~~~a~aL------~~~p~lLlLDEP~~~~~i~~~l~~l~~~---~g~tviivtHdl~  193 (280)
                      .+.....  ....+..   .+ ....|.++      -.++-+|++|+||...+-...+..+..+   .|.+..+.+|...
T Consensus       208 ~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~~  287 (432)
T PRK06793        208 EGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKK  287 (432)
T ss_pred             cccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccchh
Confidence            1100000  0000110   11 11111111      2689999999998776644444333221   3788888888433

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.35  E-value=8.3e-07  Score=77.36  Aligned_cols=35  Identities=6%  Similarity=-0.060  Sum_probs=26.0

Q ss_pred             HHHHhhhhccCCCEEEEeCcc-----cHH------HHHHHHHHHHh
Q 023563          145 RQKFGSDAYDQVDVIGIDEAQ-----FFE------DLYDFCREAAD  179 (280)
Q Consensus       145 ~~~~a~aL~~~p~lLlLDEP~-----~~~------~i~~~l~~l~~  179 (280)
                      ....+++++.+|+++++|||+     +.+      .+.+.++++++
T Consensus       160 f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        160 FLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             HHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            334477899999999999998     654      46677776653

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.32  E-value=9.9e-07  Score=83.64  Aligned_cols=49  Identities=24%  Similarity=0.416  Sum_probs=38.0

Q ss_pred             eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-h-hCC-eeEEEecCC
Q 023563           66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-T-QKG-RNVAVIKSN  115 (280)
Q Consensus        66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~-~~g-~~i~~~~~~  115 (280)
                      .++++.++.+++|++++|+||||+||||++ ..|++. . ..| .++.++..+
T Consensus       125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTti-akLA~~~~~~~G~~~V~lit~D  176 (374)
T PRK14722        125 PVLDSEDALMERGGVFALMGPTGVGKTTTT-AKLAARCVMRFGASKVALLTTD  176 (374)
T ss_pred             hhhcCCCccccCCcEEEEECCCCCCHHHHH-HHHHHHHHHhcCCCeEEEEecc
Confidence            467788889999999999999999999999 555553 2 234 577777644

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.32  E-value=2e-06  Score=68.24  Aligned_cols=104  Identities=22%  Similarity=0.097  Sum_probs=57.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ  155 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~  155 (280)
                      .+..+.|.||.|+||||++ +.+..... .+..+.++........         .....   .................+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~-~~i~~~~~~~~~~v~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~   84 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLA-RAIANELFRPGAPFLYLNASDLLEG---------LVVAE---LFGHFLVRLLFELAEKAK   84 (151)
T ss_pred             CCCeEEEECCCCCCHHHHH-HHHHHHhhcCCCCeEEEehhhhhhh---------hHHHH---HhhhhhHhHHHHhhccCC
Confidence            5778999999999999999 66665332 2223332221110000         00000   000000111123344568


Q ss_pred             CCEEEEeCccc-----HHHHHHHHHHHHh----hcCCEEEEEEechh
Q 023563          156 VDVIGIDEAQF-----FEDLYDFCREAAD----HDGKTVIVAGLDGD  193 (280)
Q Consensus       156 p~lLlLDEP~~-----~~~i~~~l~~l~~----~~g~tviivtHdl~  193 (280)
                      +.+|++||...     ...+.+.+.....    ..+..+|+++++..
T Consensus        85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            99999999953     2345666666543    13788999998765

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.30  E-value=7.9e-07  Score=62.96  Aligned_cols=31  Identities=32%  Similarity=0.537  Sum_probs=24.1

Q ss_pred             eeeeEeeC-ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           70 EASVSSPS-GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        70 ~isl~i~~-Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +-++++.+ |.++.|.|||||||||++ -.+.-
T Consensus        14 ~~~~~~~~~g~~tli~G~nGsGKSTll-DAi~~   45 (62)
T PF13555_consen   14 GETIDFDPRGDVTLITGPNGSGKSTLL-DAIQT   45 (62)
T ss_pred             CeEEeecCCCcEEEEECCCCCCHHHHH-HHHHH
Confidence            34567765 569999999999999999 55543

>PRK13764 ATPase; Provisional

Probab=98.29  E-value=7.9e-06  Score=81.79  Aligned_cols=137  Identities=16%  Similarity=0.061  Sum_probs=76.8

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAY  153 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~  153 (280)
                      ..++.-+.|.||.||||||++ +.+.... ..++.+..+......... ..+.|..     .. ..+...+.   ...|.
T Consensus       254 ~~~~~~ILIsG~TGSGKTTll-~AL~~~i~~~~riV~TiEDp~El~~~-~~i~q~~-----~~-~~~~~~~~---~~lLR  322 (602)
T PRK13764        254 EERAEGILIAGAPGAGKSTFA-QALAEFYADMGKIVKTMESPRDLQVP-PEITQYS-----KL-EGSMEETA---DILLL  322 (602)
T ss_pred             HhcCCEEEEECCCCCCHHHHH-HHHHHHHhhCCCEEEEECCCccccCC-CcceEEe-----ec-cccHHHHH---HHHHh
Confidence            345667899999999999999 7776653 344455344322221111 0111110     00 01111111   12366


Q ss_pred             cCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEe--chhHhhhccC---CccccccccceEEEeec-ee--ccccC
Q 023563          154 DQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGL--DGDYLRRSFG---SVIDIIPLADSVTKLTA-RC--EFCGK  224 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtH--dl~~~~~~~~---~~~~ll~~aD~i~~L~~-~i--~~~g~  224 (280)
                      .+|+++++||.--... ++++..++.. |..++-+-|  +...+.+.+.   .+..+..++|+|+++++ ++  +++.+
T Consensus       323 ~rPD~IivGEiRd~Et-~~~~~~l~~a-g~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~~v~~~~  399 (602)
T PRK13764        323 VRPDYTIYDEMRKTED-FKIFADMRLA-GVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEVSKVYDLE  399 (602)
T ss_pred             hCCCEEEECCCCCHHH-HHHHHHHHHc-CCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEEEEEEeee
Confidence            8999999999966554 4555555543 777888889  1111111111   12223348999999999 77  55555

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.27  E-value=1.3e-05  Score=71.23  Aligned_cols=64  Identities=16%  Similarity=0.173  Sum_probs=42.2

Q ss_pred             ccCCCEEEEeCccc------------HHHHHHHHHHHHhhcCCEEEEEEechhHhh------hccCCccccccccceEEE
Q 023563          153 YDQVDVIGIDEAQF------------FEDLYDFCREAADHDGKTVIVAGLDGDYLR------RSFGSVIDIIPLADSVTK  214 (280)
Q Consensus       153 ~~~p~lLlLDEP~~------------~~~i~~~l~~l~~~~g~tviivtHdl~~~~------~~~~~~~~ll~~aD~i~~  214 (280)
                      ..+|+++++| |..            ...+++.|.+++++.|.+||+++|...-..      ....+..-+..-++-++.
T Consensus       109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~~~~~~~~~~~rGssal~~~~r~~~~  187 (239)
T cd01125         109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGSAKDGDTQEAARGASALVDGARWVRA  187 (239)
T ss_pred             hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcccccCcccccccCcHHHHhcccceEEE
Confidence            5799999999 632            124677888888777999999999875332      123334444444555555


Q ss_pred             eec
Q 023563          215 LTA  217 (280)
Q Consensus       215 L~~  217 (280)
                      |..
T Consensus       188 l~~  190 (239)
T cd01125         188 LTR  190 (239)
T ss_pred             Eee
Confidence            543

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.25  E-value=1.1e-05  Score=77.23  Aligned_cols=148  Identities=20%  Similarity=0.210  Sum_probs=86.9

Q ss_pred             ceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh-cc--h--hCCeeEEEecCCcc-cccccce-------
Q 023563           58 PLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ-AE--T--QKGRNVAVIKSNKD-TRYGLDS-------  124 (280)
Q Consensus        58 ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~-gl--~--~~g~~i~~~~~~~~-~~~~~~~-------  124 (280)
                      +++...+...+.+  +-|++| ++.|+|.+--|||||| +.|. |.  +  -+|+..-.-.+..- .+..-+.       
T Consensus       227 ve~~LP~~g~v~G--MGIp~G-vTlIvGGGyHGKSTLL-~Ale~GVYnHipGDGRE~VVT~~~avkirAEDGR~V~~vDI  302 (448)
T PF09818_consen  227 VEIELPNGGTVTG--MGIPKG-VTLIVGGGYHGKSTLL-EALERGVYNHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDI  302 (448)
T ss_pred             EEEECCCCCEEEE--EeeCCc-EEEEECCCCccHHHHH-HHHHhcccCCCCCCCceEEEECCCceEEEecCCceEeCccc
Confidence            4444433333444  569999 9999999999999999 6664 43  1  14444322221110 0100000       


Q ss_pred             --eee-----ecccccccccccCchHHHHHHhhhhccCCCEEEEeCcccHH---------------------HHHHHHHH
Q 023563          125 --IVT-----HDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFE---------------------DLYDFCRE  176 (280)
Q Consensus       125 --v~~-----~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~---------------------~i~~~l~~  176 (280)
                        ++.     .+...+......+....+...-.||-...++||+||=+++.                     -+.+.++.
T Consensus       303 SpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~  382 (448)
T PF09818_consen  303 SPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRS  382 (448)
T ss_pred             hHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHH
Confidence              000     00011111112233444444445777899999999985431                     16778888


Q ss_pred             HHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563          177 AADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC  219 (280)
Q Consensus       177 l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i  219 (280)
                      +.+++|.+.|+|.=-..          +.+.+||+|++|++ +.
T Consensus       383 l~~~~GvStIlV~Ggsg----------dy~~vAD~Vi~Md~Y~~  416 (448)
T PF09818_consen  383 LYEKLGVSTILVVGGSG----------DYFDVADRVIMMDEYRP  416 (448)
T ss_pred             HHHHcCceEEEEeccch----------hhHhhCCEEEEecCccc
Confidence            98888999888874444          44569999999999 64

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.24  E-value=1.7e-06  Score=83.74  Aligned_cols=52  Identities=13%  Similarity=0.028  Sum_probs=46.2

Q ss_pred             ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563           51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ  104 (280)
Q Consensus        51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~  104 (280)
                      +.++.+++++.|. +..+++.++ +|.+|++++|+||||||||||+ ++|+++..
T Consensus       138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL-~~Ia~l~~  190 (450)
T PRK06002        138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLL-AMLARADA  190 (450)
T ss_pred             CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHH-HHHhCCCC
Confidence            3689999999994 578899885 9999999999999999999999 99998743

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=98.24  E-value=4e-06  Score=72.72  Aligned_cols=118  Identities=15%  Similarity=0.135  Sum_probs=63.8

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeee------ccc-ccccccccCchHHHHH
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTH------DGV-KLPCCALTTLSSFRQK  147 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~------~~~-~~~~~~~~~l~~~~~~  147 (280)
                      +++|+++.|.||+|||||||.+..+......|..+.|+.-.......+..+...      ... ........+.......
T Consensus         9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   88 (209)
T TIGR02237         9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQK   88 (209)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHH
Confidence            689999999999999999999554444444567777776542110000000000      000 0000111111112222


Q ss_pred             Hhhhhc-cCCCEEEEeCccc--H-----------HH---HHHHHHHHHhhcCCEEEEEEech
Q 023563          148 FGSDAY-DQVDVIGIDEAQF--F-----------ED---LYDFCREAADHDGKTVIVAGLDG  192 (280)
Q Consensus       148 ~a~aL~-~~p~lLlLDEP~~--~-----------~~---i~~~l~~l~~~~g~tviivtHdl  192 (280)
                      ....+. .+|+++++|--++  +           ..   ++..|.+++++.|.++|++.|-.
T Consensus        89 l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~  150 (209)
T TIGR02237        89 TSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVY  150 (209)
T ss_pred             HHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccE
Confidence            221122 2799999999732  1           02   23346677777899999998843

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=98.24  E-value=6.8e-06  Score=72.73  Aligned_cols=144  Identities=19%  Similarity=0.111  Sum_probs=83.6

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCccccccc-------ceeee---eccc-----------
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKDTRYGL-------DSIVT---HDGV-----------  131 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~~~~~~-------~~v~~---~~~~-----------  131 (280)
                      -+++|+++.|.|+.|+||||++..++...... |..+.|+.-......-.       ..+..   ....           
T Consensus         9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (242)
T cd00984           9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSDEDWERLAE   88 (242)
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHH
Confidence            37899999999999999999995555555444 77777776433211000       00000   0000           


Q ss_pred             ----------ccccccccCchHHHHHHhhh-hccCCCEEEEeCccc----------H---HHHHHHHHHHHhhcCCEEEE
Q 023563          132 ----------KLPCCALTTLSSFRQKFGSD-AYDQVDVIGIDEAQF----------F---EDLYDFCREAADHDGKTVIV  187 (280)
Q Consensus       132 ----------~~~~~~~~~l~~~~~~~a~a-L~~~p~lLlLDEP~~----------~---~~i~~~l~~l~~~~g~tvii  187 (280)
                                .........+.++..+.... .-.+|+++++|=-+.          .   .++...|++++++.|.++++
T Consensus        89 ~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~  168 (242)
T cd00984          89 AIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIA  168 (242)
T ss_pred             HHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence                      00000011233333332211 123899999995411          1   13677788888888999999


Q ss_pred             EEechhHhh---------hccCCccccccccceEEEeec
Q 023563          188 AGLDGDYLR---------RSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       188 vtHdl~~~~---------~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ++|-.....         .-++++..+...||-++.|..
T Consensus       169 ~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~  207 (242)
T cd00984         169 LSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYR  207 (242)
T ss_pred             ecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEec
Confidence            999543221         123444556678999998887

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.23  E-value=1.1e-06  Score=69.89  Aligned_cols=113  Identities=22%  Similarity=0.299  Sum_probs=58.0

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc-chh-----CCeeEEEecCCccc-cccc-ceeeeecccccccccccCchHHHHH
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA-ETQ-----KGRNVAVIKSNKDT-RYGL-DSIVTHDGVKLPCCALTTLSSFRQK  147 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g-l~~-----~g~~i~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~~~~l~~~~~~  147 (280)
                      +.+.++.|.||.|+||||++ +.+.. +..     ...++.++.-.... ...+ ..+......  +.........+.+.
T Consensus         2 ~~~~~~~i~G~~G~GKT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~l~~~   78 (131)
T PF13401_consen    2 QSQRILVISGPPGSGKTTLI-KRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGL--PLKSRQTSDELRSL   78 (131)
T ss_dssp             -----EEEEE-TTSSHHHHH-HHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT---SSSSTS-HHHHHHH
T ss_pred             CCCcccEEEcCCCCCHHHHH-HHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCc--cccccCCHHHHHHH
Confidence            35678999999999999999 44443 211     13343333211111 0000 011111010  00001223344444


Q ss_pred             HhhhhccCC-CEEEEeCccc--HHHHHHHHHHHHhhcCCEEEEEEec
Q 023563          148 FGSDAYDQV-DVIGIDEAQF--FEDLYDFCREAADHDGKTVIVAGLD  191 (280)
Q Consensus       148 ~a~aL~~~p-~lLlLDEP~~--~~~i~~~l~~l~~~~g~tviivtHd  191 (280)
                      ....+-... .+|++||...  ...+++.|+.+.++.+.++|+++++
T Consensus        79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~  125 (131)
T PF13401_consen   79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred             HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence            433443343 5999999944  3568888999988778999999987

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=98.23  E-value=9.6e-06  Score=69.13  Aligned_cols=118  Identities=22%  Similarity=0.250  Sum_probs=56.5

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcc----hh------CCeeEEEecCCccc---ccccceeeeec----cccc-c--
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAE----TQ------KGRNVAVIKSNKDT---RYGLDSIVTHD----GVKL-P--  134 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl----~~------~g~~i~~~~~~~~~---~~~~~~v~~~~----~~~~-~--  134 (280)
                      +++|+++.|.||.|+||||++..++..+    .+      .+..+.|+..+...   ...+..+.+..    ...+ .  
T Consensus        29 ~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~  108 (193)
T PF13481_consen   29 LPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLS  108 (193)
T ss_dssp             E-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecc
Confidence            6799999999999999999993333322    22      34456666543321   00000000000    0000 0  


Q ss_pred             ---cccc------c-CchHHHHHHhhhhc--cCCCEEEEe--------Cccc---HHHHHHHHHHHHhhcCCEEEEEEec
Q 023563          135 ---CCAL------T-TLSSFRQKFGSDAY--DQVDVIGID--------EAQF---FEDLYDFCREAADHDGKTVIVAGLD  191 (280)
Q Consensus       135 ---~~~~------~-~l~~~~~~~a~aL~--~~p~lLlLD--------EP~~---~~~i~~~l~~l~~~~g~tviivtHd  191 (280)
                         ....      . ......++....+.  .+|+++++|        .+..   ..+++..+++++++.|.+|+++.|-
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  188 (193)
T PF13481_consen  109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHT  188 (193)
T ss_dssp             -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE
T ss_pred             ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence               0000      0 02222333322332  479999999        3322   2368888899988889999999885


Q ss_pred             h
Q 023563          192 G  192 (280)
Q Consensus       192 l  192 (280)
                      -
T Consensus       189 ~  189 (193)
T PF13481_consen  189 N  189 (193)
T ss_dssp             -
T ss_pred             C
Confidence            3

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=98.21  E-value=3.9e-06  Score=73.93  Aligned_cols=119  Identities=13%  Similarity=0.100  Sum_probs=62.7

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCccc-ccccceeeeecc---------cc-ccccc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNKDT-RYGLDSIVTHDG---------VK-LPCCA  137 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~~~-~~~~~~v~~~~~---------~~-~~~~~  137 (280)
                      +++|+++.|.||+|||||||+..++......      +..+.|+...... ...+..+.+...         .. .....
T Consensus        16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~   95 (235)
T cd01123          16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN   95 (235)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence            7899999999999999999993333222211      2455565433211 000100100000         00 00001


Q ss_pred             ccCchHHHHHHhhhh-cc-CCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCEEEEEEechh
Q 023563          138 LTTLSSFRQKFGSDA-YD-QVDVIGIDEAQFF------------------EDLYDFCREAADHDGKTVIVAGLDGD  193 (280)
Q Consensus       138 ~~~l~~~~~~~a~aL-~~-~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~tviivtHdl~  193 (280)
                      ..++.......-..+ -. +++++++|--++.                  .++...|++++++++.+||++.|-..
T Consensus        96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~  171 (235)
T cd01123          96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTA  171 (235)
T ss_pred             HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEee
Confidence            111112222211111 23 8999999998421                  12456677788888999999987554

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.20  E-value=8.2e-06  Score=77.18  Aligned_cols=109  Identities=20%  Similarity=0.201  Sum_probs=61.9

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchh----CCeeEEEecCCccccc-cc----ceeeeecccccccccccCchHHHH
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQ----KGRNVAVIKSNKDTRY-GL----DSIVTHDGVKLPCCALTTLSSFRQ  146 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~g~~i~~~~~~~~~~~-~~----~~v~~~~~~~~~~~~~~~l~~~~~  146 (280)
                      ++|..++|+||+||||||++ +.+.+...    .++.+..+........ ..    ..+.|. ..      ..+...+..
T Consensus       132 ~~~glilI~GpTGSGKTTtL-~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~-~v------~~~~~~~~~  203 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLL-AAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQS-EI------PRHLNNFAA  203 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHH-HHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeee-ec------cccccCHHH
Confidence            57899999999999999999 88877642    2334443322221111 00    111111 10      011122333


Q ss_pred             HHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhH
Q 023563          147 KFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDY  194 (280)
Q Consensus       147 ~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~  194 (280)
                      -.-.+|=.+|+++++.|---...+...++.. . .|..|+-+-|-.+.
T Consensus       204 ~l~~aLR~~Pd~i~vGEiRd~et~~~al~aa-~-tGh~v~tTlHa~~~  249 (358)
T TIGR02524       204 GVRNALRRKPHAILVGEARDAETISAALEAA-L-TGHPVYTTLHSSGV  249 (358)
T ss_pred             HHHHHhccCCCEEeeeeeCCHHHHHHHHHHH-H-cCCcEEEeeccCCH
Confidence            2223566899999999976555444444433 3 38888877785443

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.20  E-value=1.6e-05  Score=82.73  Aligned_cols=65  Identities=17%  Similarity=0.118  Sum_probs=47.0

Q ss_pred             hhccCCCEEEEeCcc-------cHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          151 DAYDQVDVIGIDEAQ-------FFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       151 aL~~~p~lLlLDEP~-------~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      .+..+|.++++|||.       +...+.+.++.+++. |..++++||+++.+... .....|++-|..-++|-+
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~-~~~~i~~TQ~~~d~~~s-~~~~~i~~~~~t~I~lpn  709 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKL-NTFVIFATQSVEDASKS-AISDTLVQQTATQIFLPN  709 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHhC-hhHHHHHHhCCeEEEcCC
Confidence            356799999999993       234577788888765 99999999999988652 334455666766555544

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.18  E-value=1e-05  Score=75.39  Aligned_cols=40  Identities=23%  Similarity=0.356  Sum_probs=31.5

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCC
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSN  115 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~  115 (280)
                      -++|++++|+||||+||||++ ..|++. ...|.++.++..+
T Consensus       111 ~~~~~vi~lvGpnGsGKTTt~-~kLA~~l~~~g~~V~Li~~D  151 (318)
T PRK10416        111 EKKPFVILVVGVNGVGKTTTI-GKLAHKYKAQGKKVLLAAGD  151 (318)
T ss_pred             CCCCeEEEEECCCCCcHHHHH-HHHHHHHHhcCCeEEEEecC
Confidence            367899999999999999999 666664 4566777776544

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.17  E-value=2.5e-05  Score=81.65  Aligned_cols=65  Identities=18%  Similarity=0.091  Sum_probs=47.2

Q ss_pred             hhhccCCCEEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          150 SDAYDQVDVIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                      +++..+|+++++|||..       +..+.+.++.+++. |.+++++||+++.+.+. +....+++.|+..++|.
T Consensus       682 ~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~-g~~vil~TQs~~d~~~s-~i~~~ilen~~t~I~Lp  753 (852)
T PRK13891        682 RALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKA-NCLVLMATQSLSDAANS-GILDVIVESTATKIFLP  753 (852)
T ss_pred             HHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHhhC-chHHHHHHcCCcceecC
Confidence            35678999999999933       34577888888775 99999999999988752 22334556666655553

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.15  E-value=1.6e-06  Score=83.67  Aligned_cols=39  Identities=21%  Similarity=0.107  Sum_probs=35.7

Q ss_pred             CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563           64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ  104 (280)
Q Consensus        64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~  104 (280)
                      +..+++++ |+|.+|++++|+||||+|||||+ ++|.|+..
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl-~~I~g~~~  180 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLL-GMITRYTQ  180 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHH-HHHhcccC
Confidence            46799999 99999999999999999999999 99998643

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=98.14  E-value=1.3e-05  Score=70.40  Aligned_cols=118  Identities=19%  Similarity=0.182  Sum_probs=64.2

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeee--cccc--cccccccCchH---HHHH
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTH--DGVK--LPCCALTTLSS---FRQK  147 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~--~~~~--~~~~~~~~l~~---~~~~  147 (280)
                      +++|+++.|.||+|+|||||...++......+.++.|+.-.......+..+...  ....  .......+..+   ..+.
T Consensus        20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   99 (225)
T PRK09361         20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRK   99 (225)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHH
Confidence            689999999999999999999555544445577777775541000000000000  0000  00000111212   1222


Q ss_pred             HhhhhccCCCEEEEeCccc--H-------------HHH---HHHHHHHHhhcCCEEEEEEech
Q 023563          148 FGSDAYDQVDVIGIDEAQF--F-------------EDL---YDFCREAADHDGKTVIVAGLDG  192 (280)
Q Consensus       148 ~a~aL~~~p~lLlLDEP~~--~-------------~~i---~~~l~~l~~~~g~tviivtHdl  192 (280)
                      ....+..+++++++|--++  +             ..+   +..|.++++++|.++|++.|-.
T Consensus       100 ~~~~~~~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~  162 (225)
T PRK09361        100 AEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVY  162 (225)
T ss_pred             HHHHHHhcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccce
Confidence            2211226999999999731  0             112   2336667777899999998843

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.14  E-value=8.3e-06  Score=78.52  Aligned_cols=40  Identities=28%  Similarity=0.466  Sum_probs=29.7

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchh---CCeeEEEecCC
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---KGRNVAVIKSN  115 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---~g~~i~~~~~~  115 (280)
                      +++|++++|+||||+||||++ +.|++...   .+..++++..+
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtl-akLA~~~~~~~~~~~v~~i~~d  230 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTT-AKLAARAVIRHGADKVALLTTD  230 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHH-HHHHHHHHHhcCCCeEEEEecC
Confidence            578999999999999999999 77777422   23455555443

>PLN03210 Resistant to P

Probab=98.13  E-value=6.3e-06  Score=88.75  Aligned_cols=131  Identities=17%  Similarity=0.137  Sum_probs=68.2

Q ss_pred             eeeEeeCceEEEEEcCCCCcHHHHHHHHHhc-chhC-CeeEEEecCCcccccccceeeee-------------ccccccc
Q 023563           71 ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA-ETQK-GRNVAVIKSNKDTRYGLDSIVTH-------------DGVKLPC  135 (280)
Q Consensus        71 isl~i~~Gei~~liGpNGsGKSTLl~~~l~g-l~~~-g~~i~~~~~~~~~~~~~~~v~~~-------------~~~~~~~  135 (280)
                      +++...+++++||+|++|+|||||+ +.+.+ +... ...+ ++.. ....... ...+.             .......
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA-~~l~~~l~~~F~g~v-fv~~-~~v~~~~-~~~~~~~~~~~~~~~~l~~~~l~~i  275 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIA-RALFSRLSRQFQSSV-FIDR-AFISKSM-EIYSSANPDDYNMKLHLQRAFLSEI  275 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHH-HHHHHHHhhcCCeEE-Eeec-cccccch-hhcccccccccchhHHHHHHHHHHH
Confidence            4677889999999999999999999 77754 2211 1111 2110 0000000 00000             0000000


Q ss_pred             ccccCc--hHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHh--hcCCEEEEEEechhHhhhccCCccccccccce
Q 023563          136 CALTTL--SSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAAD--HDGKTVIVAGLDGDYLRRSFGSVIDIIPLADS  211 (280)
Q Consensus       136 ~~~~~l--~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~--~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~  211 (280)
                      +...++  ... ......+..++-+|+||+..... .++.+....+  ..|.+||++|||.+.+..         .-+|+
T Consensus       276 l~~~~~~~~~~-~~~~~~L~~krvLLVLDdv~~~~-~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~---------~~~~~  344 (1153)
T PLN03210        276 LDKKDIKIYHL-GAMEERLKHRKVLIFIDDLDDQD-VLDALAGQTQWFGSGSRIIVITKDKHFLRA---------HGIDH  344 (1153)
T ss_pred             hCCCCcccCCH-HHHHHHHhCCeEEEEEeCCCCHH-HHHHHHhhCccCCCCcEEEEEeCcHHHHHh---------cCCCe
Confidence            000010  000 11112345677788999985443 3455544332  238899999999998864         12677


Q ss_pred             EEEee
Q 023563          212 VTKLT  216 (280)
Q Consensus       212 i~~L~  216 (280)
                      ++.+.
T Consensus       345 ~~~v~  349 (1153)
T PLN03210        345 IYEVC  349 (1153)
T ss_pred             EEEec
Confidence            76654

syringae 6; Provisional

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.12  E-value=8.7e-06  Score=73.32  Aligned_cols=31  Identities=35%  Similarity=0.367  Sum_probs=26.9

Q ss_pred             eeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           71 ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        71 isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .=+.+.+|+.++|+||+|+|||||+ +.+.+.
T Consensus         9 ~~~~i~~Gqr~~I~G~~G~GKTTLl-r~I~n~   39 (249)
T cd01128           9 LFAPIGKGQRGLIVAPPKAGKTTLL-QSIANA   39 (249)
T ss_pred             eecccCCCCEEEEECCCCCCHHHHH-HHHHhc
Confidence            3368999999999999999999999 777664

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR00235 udk uridine kinase

Probab=98.12  E-value=2.1e-06  Score=74.71  Aligned_cols=27  Identities=41%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      ++|++++|+||||||||||+ +.|.++.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~-~~l~~~l   30 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVA-RKIYEQL   30 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHH-HHHHHHh
Confidence            68999999999999999999 8888754

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.11  E-value=7.7e-06  Score=74.48  Aligned_cols=62  Identities=21%  Similarity=0.263  Sum_probs=40.4

Q ss_pred             EEEcCceEEeCC--eeeeEeeeeEee-------CceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCC
Q 023563           53 VSPRPPLFSLQN--RNLHSEASVSSP-------SGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSN  115 (280)
Q Consensus        53 l~~~~ls~~y~~--~~vl~~isl~i~-------~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~  115 (280)
                      +.+++.++.|..  +.+++++++.++       +|++++|+||||+||||++ +.+++. ...+..++++..+
T Consensus        41 i~f~~~~~~~~~vl~~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~-~~l~~~l~~~~~~v~~i~~D  112 (270)
T PRK06731         41 VKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTL-AKMAWQFHGKKKTVGFITTD  112 (270)
T ss_pred             EEecCCCccccHHHHHHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHH-HHHHHHHHHcCCeEEEEecC
Confidence            444444444332  234555555554       5689999999999999999 777664 3345677766543

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=98.11  E-value=3.2e-05  Score=70.22  Aligned_cols=108  Identities=19%  Similarity=0.156  Sum_probs=61.5

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHh-cchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQ-AETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYD  154 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~-gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~  154 (280)
                      .++.++.|.||+||||||++ +.+. .+...+..+..+........  ..+.+.. . .   ...+ ..+.+....+|=+
T Consensus        78 ~~~GlilisG~tGSGKTT~l-~all~~i~~~~~~iitiEdp~E~~~--~~~~q~~-v-~---~~~~-~~~~~~l~~~lR~  148 (264)
T cd01129          78 KPHGIILVTGPTGSGKTTTL-YSALSELNTPEKNIITVEDPVEYQI--PGINQVQ-V-N---EKAG-LTFARGLRAILRQ  148 (264)
T ss_pred             cCCCEEEEECCCCCcHHHHH-HHHHhhhCCCCCeEEEECCCceecC--CCceEEE-e-C---CcCC-cCHHHHHHHHhcc
Confidence            45569999999999999999 6554 43334455555543322211  1111110 0 0   0011 1223333345667


Q ss_pred             CCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhH
Q 023563          155 QVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDY  194 (280)
Q Consensus       155 ~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~  194 (280)
                      +||+++++|..........++.. .. |.-++-+.|--+-
T Consensus       149 ~PD~i~vgEiR~~e~a~~~~~aa-~t-Gh~v~tTlHa~~~  186 (264)
T cd01129         149 DPDIIMVGEIRDAETAEIAVQAA-LT-GHLVLSTLHTNDA  186 (264)
T ss_pred             CCCEEEeccCCCHHHHHHHHHHH-Hc-CCcEEEEeccCCH
Confidence            99999999997766555555444 33 8777777775443

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.11  E-value=5.6e-06  Score=84.65  Aligned_cols=48  Identities=25%  Similarity=0.462  Sum_probs=38.8

Q ss_pred             eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--hCC-eeEEEecCC
Q 023563           67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--QKG-RNVAVIKSN  115 (280)
Q Consensus        67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--~~g-~~i~~~~~~  115 (280)
                      ++++.++.+++|++++|+||||+||||++ ..|++..  ..| +++.++..+
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTi-aKLA~~~~~~~G~kkV~lit~D  224 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTT-AKLAARCVAREGADQLALLTTD  224 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHH-HHHHhhHHHHcCCCeEEEecCc
Confidence            57788888989999999999999999999 6677653  344 578777654

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.09  E-value=1.8e-05  Score=69.23  Aligned_cols=120  Identities=18%  Similarity=0.142  Sum_probs=64.2

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCC------eeEEEecCCcccc-cccceeeeecc----cccccc---cccC
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG------RNVAVIKSNKDTR-YGLDSIVTHDG----VKLPCC---ALTT  140 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g------~~i~~~~~~~~~~-~~~~~v~~~~~----~~~~~~---~~~~  140 (280)
                      +++|+++.|.||+|+|||||++.++......+      ..+.|+....... ..+..+.+...    .....+   ...+
T Consensus        16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~   95 (226)
T cd01393          16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN   95 (226)
T ss_pred             CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC
Confidence            78999999999999999999944333333333      5555655432210 01100101000    000000   0112


Q ss_pred             chHHHHHHhhhh-----ccCCCEEEEeCcccH---------------H---HHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563          141 LSSFRQKFGSDA-----YDQVDVIGIDEAQFF---------------E---DLYDFCREAADHDGKTVIVAGLDGDYL  195 (280)
Q Consensus       141 l~~~~~~~a~aL-----~~~p~lLlLDEP~~~---------------~---~i~~~l~~l~~~~g~tviivtHdl~~~  195 (280)
                      ..++.... ..+     -.+++++++|--+..               .   ++...|++++++++.+||++.|-....
T Consensus        96 ~~~~~~~l-~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~~  172 (226)
T cd01393          96 GEQQLEIV-EELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKV  172 (226)
T ss_pred             HHHHHHHH-HHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeeec
Confidence            22222211 111     248899999985210               1   244557777777899999999865543

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.05  E-value=2.3e-05  Score=62.05  Aligned_cols=21  Identities=33%  Similarity=0.377  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhcc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +.|.||.|+||||++ +.++..
T Consensus         1 ill~G~~G~GKT~l~-~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLA-RALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHH-HHHHHH
T ss_pred             CEEECcCCCCeeHHH-HHHHhh
Confidence            468999999999999 877764

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.05  E-value=4e-06  Score=80.88  Aligned_cols=53  Identities=15%  Similarity=0.096  Sum_probs=46.6

Q ss_pred             cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC
Q 023563           52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG  106 (280)
Q Consensus        52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g  106 (280)
                      .++.++++..| .+..+++++ |+|.+|+.++|+|+||+|||||+ ++|.+.....
T Consensus       129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL-~~I~~~~~~d  182 (433)
T PRK07594        129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLL-AMLCNAPDAD  182 (433)
T ss_pred             ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHH-HHhcCCCCCC
Confidence            57888899888 567899999 99999999999999999999999 9998875433

>PF13173 AAA_14: AAA domain

Probab=98.04  E-value=2.2e-05  Score=63.10  Aligned_cols=100  Identities=24%  Similarity=0.200  Sum_probs=59.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCCC
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVD  157 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~  157 (280)
                      +.++.|.||-|+||||++.+++..+. ...++.++.-....              .......++   .+.+......+..
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~--------------~~~~~~~~~---~~~~~~~~~~~~~   63 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR--------------DRRLADPDL---LEYFLELIKPGKK   63 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH--------------HHHHhhhhh---HHHHHHhhccCCc
Confidence            56899999999999999944333322 23333333211100              000000001   1111111123789


Q ss_pred             EEEEeCcccHHHHHHHHHHHHhhc-CCEEEEEEechhHh
Q 023563          158 VIGIDEAQFFEDLYDFCREAADHD-GKTVIVAGLDGDYL  195 (280)
Q Consensus       158 lLlLDEP~~~~~i~~~l~~l~~~~-g~tviivtHdl~~~  195 (280)
                      ++++||-+...+..+.++.+.+.. +..+++++......
T Consensus        64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l  102 (128)
T PF13173_consen   64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL  102 (128)
T ss_pred             EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence            999999988888888888888763 47899998877655

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=98.03  E-value=1.5e-05  Score=78.77  Aligned_cols=141  Identities=15%  Similarity=0.138  Sum_probs=76.5

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHh-cchhCCeeEEEecCCcccc--------cccc--eeeeecccc----ccc----
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQ-AETQKGRNVAVIKSNKDTR--------YGLD--SIVTHDGVK----LPC----  135 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~-gl~~~g~~i~~~~~~~~~~--------~~~~--~v~~~~~~~----~~~----  135 (280)
                      +++|+++.|.|++|+|||||....+. |+...|..+.|+.-.....        +++.  .........    ...    
T Consensus        28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~  107 (509)
T PRK09302         28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQ  107 (509)
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccccc
Confidence            89999999999999999999944443 4433377776664332211        1100  000000000    000    


Q ss_pred             --ccccCchHHHHHHhhhh-ccCCCEEEEeCccc-----------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCC
Q 023563          136 --CALTTLSSFRQKFGSDA-YDQVDVIGIDEAQF-----------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGS  201 (280)
Q Consensus       136 --~~~~~l~~~~~~~a~aL-~~~p~lLlLDEP~~-----------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~  201 (280)
                        ....++..+..+...++ ..+|+.+++|=-+.           +..+.++++.+.+ .|.|+|+++|+...... ...
T Consensus       108 ~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~-~g~TvLlt~~~~~~~~~-~~~  185 (509)
T PRK09302        108 EEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQ-KGVTAVITGERGDEYGP-LTR  185 (509)
T ss_pred             cccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHh-CCCEEEEEECCccCcCC-ccc
Confidence              00112334444443332 25889999986521           2345566666655 49999999998652110 000


Q ss_pred             ccccccccceEEEeec
Q 023563          202 VIDIIPLADSVTKLTA  217 (280)
Q Consensus       202 ~~~ll~~aD~i~~L~~  217 (280)
                      ......+||.|+.|+.
T Consensus       186 ~~~~~~laDgVI~L~~  201 (509)
T PRK09302        186 YGVEEFVSDCVIILRN  201 (509)
T ss_pred             cCceEEEeeEEEEEeE
Confidence            0011247999999986

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=98.02  E-value=1.7e-05  Score=69.70  Aligned_cols=140  Identities=20%  Similarity=0.194  Sum_probs=76.4

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCcccc--------ccc--ceeeeecccc-ccc-cc----
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKDTR--------YGL--DSIVTHDGVK-LPC-CA----  137 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~~~--------~~~--~~v~~~~~~~-~~~-~~----  137 (280)
                      +++|.++.|.||+|+|||+|..+.+..-... |.++.|+.-.....        +++  .......... .+. ..    
T Consensus        16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~   95 (226)
T PF06745_consen   16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGW   95 (226)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred             CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccc
Confidence            7899999999999999999985655544445 78887776433221        111  0000000000 000 00    


Q ss_pred             -ccCchHHHHHHhhhhc-cCCCEEEEeCccc----------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCcccc
Q 023563          138 -LTTLSSFRQKFGSDAY-DQVDVIGIDEAQF----------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDI  205 (280)
Q Consensus       138 -~~~l~~~~~~~a~aL~-~~p~lLlLDEP~~----------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~l  205 (280)
                       ..++..+......++- .+|+.+++|--+.          +..+..+...++ +.|.|+|+++|......  -.....+
T Consensus        96 ~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~-~~~~t~llt~~~~~~~~--~~~~~~i  172 (226)
T PF06745_consen   96 SPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLK-SRGVTTLLTSEMPSGSE--DDGTFGI  172 (226)
T ss_dssp             TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHH-HTTEEEEEEEEESSSSS--SSSSTSH
T ss_pred             cccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHH-HCCCEEEEEEccccCcc--cccccch
Confidence             2344555555433322 3779999997622          223444445554 45999999998321100  0112233


Q ss_pred             cc-ccceEEEeec
Q 023563          206 IP-LADSVTKLTA  217 (280)
Q Consensus       206 l~-~aD~i~~L~~  217 (280)
                      .. +||-|+.|+.
T Consensus       173 ~~~l~D~vI~L~~  185 (226)
T PF06745_consen  173 EHYLADGVIELRY  185 (226)
T ss_dssp             HHHHSSEEEEEEE
T ss_pred             hhhcccEEEEEEE
Confidence            45 7999999986

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.01  E-value=4e-06  Score=71.78  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=22.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      |++++|+||||||||||+ +.|++..
T Consensus         2 g~~i~l~G~sGsGKsTl~-~~l~~~~   26 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLL-AALRQRE   26 (186)
T ss_pred             CcEEEEECCCCCCHHHHH-HHHhccC
Confidence            789999999999999999 9888753

>PRK06893 DNA replication initiation factor; Validated

Probab=97.99  E-value=3e-05  Score=68.77  Aligned_cols=87  Identities=20%  Similarity=0.277  Sum_probs=53.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCCC
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVD  157 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~  157 (280)
                      -.+.|.||+|+|||+|+ ..++... ..+.++.|+.-...            .        .....+.+     -+.+++
T Consensus        40 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~y~~~~~~------------~--------~~~~~~~~-----~~~~~d   93 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLL-KAVSNHYLLNQRTAIYIPLSKS------------Q--------YFSPAVLE-----NLEQQD   93 (229)
T ss_pred             CeEEEECCCCCCHHHHH-HHHHHHHHHcCCCeEEeeHHHh------------h--------hhhHHHHh-----hcccCC
Confidence            35789999999999999 8877642 23334433322100            0        00001111     134789


Q ss_pred             EEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEech
Q 023563          158 VIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLDG  192 (280)
Q Consensus       158 lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHdl  192 (280)
                      +|++||...       ...+++++.+..+. |.++|++|++.
T Consensus        94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~-~~~illits~~  134 (229)
T PRK06893         94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-GKTLLLISADC  134 (229)
T ss_pred             EEEEeChhhhcCChHHHHHHHHHHHHHHHc-CCcEEEEeCCC
Confidence            999999943       23577777777654 77887777765

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.99  E-value=8.9e-06  Score=75.97  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=27.7

Q ss_pred             eeeeEeeC--ceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           70 EASVSSPS--GEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        70 ~isl~i~~--Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +|+..+++  ++.++|+|++|+|||||+ +.|++.
T Consensus       152 ~i~~~~~~~~~~~~~~~G~~~~gkstl~-~~l~~~  185 (325)
T TIGR01526       152 HIPREVRPFFVKTVAILGGESTGKSTLV-NKLAAV  185 (325)
T ss_pred             hCCHHHHhhcCcEEEEECCCCCCHHHHH-HHHHHh
Confidence            46777888  999999999999999999 777764

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=97.98  E-value=8.1e-06  Score=77.84  Aligned_cols=48  Identities=21%  Similarity=0.162  Sum_probs=37.1

Q ss_pred             hhhhccCCCEEEEeCcccHHHHH------HHHHHHHhhcCCEEEEEEechhHhhh
Q 023563          149 GSDAYDQVDVIGIDEAQFFEDLY------DFCREAADHDGKTVIVAGLDGDYLRR  197 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~~i~------~~l~~l~~~~g~tviivtHdl~~~~~  197 (280)
                      |.+.+++.++.++|||.+.+|+-      ..|+.+... +.=||+|.||++....
T Consensus       225 a~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p-~~YiIVVEHDLsVLDy  278 (592)
T KOG0063|consen  225 AMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINP-DRYIIVVEHDLSVLDY  278 (592)
T ss_pred             hhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCC-CCeEEEEEeechHHHh
Confidence            44567899999999998776643      345566554 7789999999998764

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=97.98  E-value=6.9e-06  Score=69.66  Aligned_cols=31  Identities=32%  Similarity=0.545  Sum_probs=24.6

Q ss_pred             eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      ++++++++.+| +++|+||||+||||++ .+|.
T Consensus        10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil-~ai~   40 (202)
T PF13476_consen   10 FKDLEIDFSPG-LNVIYGPNGSGKSTIL-EAIR   40 (202)
T ss_dssp             EEEEEEE--SE-EEEEEESTTSSHHHHH-HHHH
T ss_pred             CcceEEEcCCC-cEEEECCCCCCHHHHH-HHHH
Confidence            47788888887 9999999999999999 5443

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.97  E-value=4.7e-06  Score=71.06  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=23.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +|++++|+|||||||||++ +.++++
T Consensus         2 ~ge~i~l~G~sGsGKSTl~-~~la~~   26 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIG-SKIAAL   26 (176)
T ss_pred             CCcEEEEECCCCCCHHHHH-HHHHHh
Confidence            5999999999999999999 988885

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=97.97  E-value=9.3e-05  Score=77.12  Aligned_cols=64  Identities=17%  Similarity=0.105  Sum_probs=47.6

Q ss_pred             hccCCCEEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          152 AYDQVDVIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       152 L~~~p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +-.+|+++++|||..       +..+.+.++.+++. |.+++++||+++.+.+. +....|+.-|+..++|.+
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~-~~~~i~~TQ~~~d~~~s-~~~~~il~n~~t~i~L~~  702 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKK-NVSVIFATQSLADIDGS-AIAPAIIESCPTRIFLPN  702 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHhcC-chHHHHHHhCCeeEEcCC
Confidence            346999999999932       34577788888765 99999999999987642 234456777887777665

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=97.97  E-value=8.6e-06  Score=76.00  Aligned_cols=45  Identities=20%  Similarity=0.025  Sum_probs=38.5

Q ss_pred             ceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563           58 PLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ  104 (280)
Q Consensus        58 ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~  104 (280)
                      ++..| .+..+++++ +.+.+|++++|+|+||+|||||+ ++|++...
T Consensus        49 ~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl-~~Ia~~~~   94 (326)
T cd01136          49 IDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLL-GMIARGTT   94 (326)
T ss_pred             ceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHH-HHHhCCCC
Confidence            44445 356799999 99999999999999999999999 99998754

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	280
2orv_A	234	Human Thymidine Kinase 1 In Complex With Tp4a Lengt		2e-34
1xbt_A	193	Crystal Structure Of Human Thymidine Kinase 1 Lengt		3e-34
1w4r_A	195	Structure Of A Type Ii Thymidine Kinase With Bound		5e-34
2wvj_A	193	Mutation Of Thr163 To Ser In Human Thymidine Kinase		7e-34
2j87_A	177	Structure Of Vaccinia Virus Thymidine Kinase In Com		2e-30
2b8t_A	223	Crystal Structure Of Thymidine Kinase From U.Urealy		2e-21
2uz3_A	243	Crystal Structure Of Thymidine Kinase With Dttp Fro		2e-21
3e2i_A	219	Crystal Structure Of Thymidine Kinase From S. Aureu		4e-21
2ja1_A	197	Thymidine Kinase From B. Cereus With Ttp Bound As P		5e-21
2j9r_A	214	Thymidine Kinase From B. Anthracis In Complex With		9e-21
1xx6_A	191	X-Ray Structure Of Clostridium Acetobutylicum Thymi		3e-20
2orw_A	184	Thermotoga Maritima Thymidine Kinase 1 Like Enzyme		2e-17

>pdb|2ORV|A Chain A, Human Thymidine Kinase 1 In Complex With Tp4a Length = 234

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/195 (44%), Positives = 114/195 (58%), Gaps = 16/195 (8%)
Query: 71  ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG 130
            S S   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY   S  THD 
Sbjct: 12  GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDR 70
Query: 131 ---VKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIV 187
                LP C L  ++  ++  G      V VIGIDE QFF D+ +FC EA  + GKTVIV
Sbjct: 71  NTMEALPACLLRDVA--QEALG------VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIV 121
Query: 188 AGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXLIGGSDIY 247
           A LDG + R+ FG++++++PLA+SV KLTA C  C + A +T R        +IGG+D Y
Sbjct: 122 AALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKY 181
Query: 248 MPVCRQHY---VSGQ 259
             VCR  Y    SGQ
Sbjct: 182 HSVCRLCYFKKASGQ 196

>pdb|1XBT|A Chain A, Crystal Structure Of Human Thymidine Kinase 1 Length = 193

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 111/188 (59%), Gaps = 13/188 (6%)
Query: 71  ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG 130
            S S   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY   S  THD 
Sbjct: 12  GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDR 70
Query: 131 ---VKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIV 187
                LP C L  ++  ++  G      V VIGIDE QFF D+ +FC EA  + GKTVIV
Sbjct: 71  NTMEALPACLLRDVA--QEALG------VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIV 121
Query: 188 AGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXLIGGSDIY 247
           A LDG + R+ FG++++++PLA+SV KLTA C  C + A +T R        +IGG+D Y
Sbjct: 122 AALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKY 181
Query: 248 MPVCRQHY 255
             VCR  Y
Sbjct: 182 HSVCRLCY 189

>pdb|1W4R|A Chain A, Structure Of A Type Ii Thymidine Kinase With Bound Dttp Length = 195

Iteration: 1
 Score =  141 bits (355), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 110/185 (59%), Gaps = 13/185 (7%)
Query: 74  SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG--- 130
           S   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY   S  THD    
Sbjct: 16  SKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTM 74
Query: 131 VKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGL 190
             LP C L  ++  ++  G      V VIGIDE QFF D+ +FC EA  + GKTVIVA L
Sbjct: 75  EALPACLLRDVA--QEALG------VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIVAAL 125
Query: 191 DGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXLIGGSDIYMPV 250
           DG + R+ FG++++++PLA+SV KLTA C  C + A +T R        +IGG+D Y  V
Sbjct: 126 DGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSV 185
Query: 251 CRQHY 255
           CR  Y
Sbjct: 186 CRLCY 190

>pdb|2WVJ|A Chain A, Mutation Of Thr163 To Ser In Human Thymidine Kinase Shifts The Specificity From Thymidine Towards The Nucleoside Analogue Azidothymidine Length = 193

Iteration: 1
 Score =  140 bits (353), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 111/188 (59%), Gaps = 13/188 (6%)
Query: 71  ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG 130
            S S   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY   S  THD 
Sbjct: 12  GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDR 70
Query: 131 ---VKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIV 187
                LP C L  ++  ++  G      V VIGIDE QFF D+ +FC EA  + GKTVIV
Sbjct: 71  NTMEALPACLLRDVA--QEALG------VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIV 121
Query: 188 AGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXLIGGSDIY 247
           A LDG + R+ FG++++++PLA+SV KLTA C  C + A ++ R        +IGG+D Y
Sbjct: 122 AALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYSKRLGTEKEVEVIGGADKY 181
Query: 248 MPVCRQHY 255
             VCR  Y
Sbjct: 182 HSVCRLCY 189

>pdb|2J87|A Chain A, Structure Of Vaccinia Virus Thymidine Kinase In Complex With Dttp: Insights For Drug Design Length = 177

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 100/181 (55%), Gaps = 7/181 (3%)
Query: 77  SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC 136
            G I +I+GPMF+GK+T L+RR++           IK + D RYG   + THD       
Sbjct: 3   GGHIQLIIGPMFSGKSTELIRRVRRYQIAQYKCVTIKYSNDNRYG-TGLWTHDKNNFEAL 61
Query: 137 ALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLR 196
             T L    Q     +     VIGIDE QFF D+ +FC   A+ +GK VIVA LDG + R
Sbjct: 62  EATKLCDVLQ-----SITDFSVIGIDEGQFFPDIVEFCERMAN-EGKIVIVAALDGTFQR 115
Query: 197 RSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXLIGGSDIYMPVCRQHYV 256
           + F ++++++ L++ V KLTA C  C K A F+ R        +IGG+D+Y  VCR+ YV
Sbjct: 116 KPFNNILNLLILSEMVVKLTAVCMKCFKEASFSKRLGEETEIEIIGGNDMYQSVCRKCYV 175
Query: 257 S 257
Sbjct: 176 G 176

>pdb|2B8T|A Chain A, Crystal Structure Of Thymidine Kinase From U.Urealyticum In Complex With Thymidine Length = 223

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 88/191 (46%), Gaps = 8/191 (4%)
Query: 72  SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGV 131
           + S   G I  I GPMFAGKT  L+RR+           V K   DTR  + +I +  G 
Sbjct: 6   AFSKKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SIRNIQSRTGT 64
Query: 132 KLPCCALTTLSSFRQKFGSDAY-DQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGL 190
            LP   + +         S+++ D+  VIGIDE QFF+D           +G  VI++GL
Sbjct: 65  SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGL 124
Query: 191 DGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXL------IGGS 244
           D ++    FG +  +   AD +TKLTA C  CG  A  +LR               IG  
Sbjct: 125 DKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKIDGKHADYNDDIVKIGCQ 184
Query: 245 DIYMPVCRQHY 255
           + Y  VCR H+
Sbjct: 185 EFYSAVCRHHH 195

>pdb|2UZ3|A Chain A, Crystal Structure Of Thymidine Kinase With Dttp From U. Urealyticum Length = 243

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 88/191 (46%), Gaps = 8/191 (4%)
Query: 72  SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGV 131
           + S   G I  I GPMFAGKT  L+RR+           V K   DTR  + +I +  G 
Sbjct: 26  AFSKKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SIRNIQSRTGT 84
Query: 132 KLPCCALTTLSSFRQKFGSDAY-DQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGL 190
            LP   + +         S+++ D+  VIGIDE QFF+D           +G  VI++GL
Sbjct: 85  SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGL 144
Query: 191 DGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXXL------IGGS 244
           D ++    FG +  +   AD +TKLTA C  CG  A  +LR               IG  
Sbjct: 145 DKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKIDGKHADYNDDIVKIGCQ 204
Query: 245 DIYMPVCRQHY 255
           + Y  VCR H+
Sbjct: 205 EFYSAVCRHHH 215

>pdb|3E2I|A Chain A, Crystal Structure Of Thymidine Kinase From S. Aureus Length = 219

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 89/186 (47%), Gaps = 10/186 (5%)
Query: 77  SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC 136
           SG I  I G  F+GK+  L+RR++      + V V K   D RY  + +V+H+G  +   
Sbjct: 27  SGWIECITGSXFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAI 86
Query: 137 ALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLR 196
            ++  S    +  +     VDVIGIDE QFF+D      E    DG  VIVAGLD D+  
Sbjct: 87  NISKAS----EIXTHDLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDXDFRG 142
Query: 197 RSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXX------LIGGSDIYMPV 250
             F     +  +++ VTKL A C  CG  +  T R              L+G ++ Y P 
Sbjct: 143 EPFEPXPKLXAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPR 202
Query: 251 CRQHYV 256
           CR H++
Sbjct: 203 CRAHHI 208

>pdb|2JA1|A Chain A, Thymidine Kinase From B. Cereus With Ttp Bound As Phosphate Donor Length = 197

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 12/184 (6%)
Query: 77  SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC 136
           +G I VI G MF+GK+  L+RR++      ++  V K   D RY  + +V+H+G+K+   
Sbjct: 9   NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAV 68
Query: 137 ALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFE-DLYDFCREAADHDGKTVIVAGLDGDYL 195
            ++      +       +++DVI IDE QFF+ D+ +  +  A+  G  VIVAGLD D+ 
Sbjct: 69  PVSASKDIFEHI----TEELDVIAIDEVQFFDGDIVEVVQVLANR-GYRVIVAGLDQDFR 123
Query: 196 RRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXX------LIGGSDIYMP 249
              FG V  ++ +A+ VTKL A C  CG  A  T R              L+G S+ Y P
Sbjct: 124 GLPFGQVPQLMAIAEHVTKLQAVCSVCGSPASRTQRLIDGEPAAFDDPIILVGASESYEP 183
Query: 250 VCRQ 253
            CR 
Sbjct: 184 RCRH 187

>pdb|2J9R|A Chain A, Thymidine Kinase From B. Anthracis In Complex With Dt Length = 214

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 12/184 (6%)
Query: 77  SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC 136
           +G I VI G MF+GK+  L+RR++      ++  V K   D RY  + +V+H+G+K+   
Sbjct: 27  NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAV 86
Query: 137 ALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFE-DLYDFCREAADHDGKTVIVAGLDGDYL 195
            ++      +       +++DVI IDE QFF+ D+ +  +  A+  G  VIVAGLD D+ 
Sbjct: 87  PVSASKDIFKHI----TEEMDVIAIDEVQFFDGDIVEVVQVLANR-GYRVIVAGLDQDFR 141
Query: 196 RRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXXX------LIGGSDIYMP 249
              FG V  ++ +A+ VTKL A C  CG  A  T R              L+G S+ Y P
Sbjct: 142 GLPFGQVPQLMAIAEHVTKLQAVCSACGSPASRTQRLIDGEPAAFDDPIILVGASESYEP 201
Query: 250 VCRQ 253
            CR 
Sbjct: 202 RCRH 205

>pdb|1XX6|A Chain A, X-Ray Structure Of Clostridium Acetobutylicum Thymidine Kinase With Adp. Northeast Structural Genomics Target Car26. Length = 191

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 12/189 (6%)
Query: 78  GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCA 137
           G + VIVGP ++GK+  L+RRI+      + + V K   D RY  + +V+H G K    A
Sbjct: 8   GWVEVIVGPXYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHXGEKEQAVA 67
Query: 138 LTTLSSFRQKFGSDAYDQVDVIGIDEAQFFED-LYDFCREAADHDGKTVIVAGLDGDYLR 196
           +       + F  D     +VI IDE QFF+D + +   + A+  G+ VI AGLD D+  
Sbjct: 68  IKNSREILKYFEEDT----EVIAIDEVQFFDDEIVEIVNKIAES-GRRVICAGLDXDFRG 122
Query: 197 RSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRXXXXXXX------XLIGGSDIYMPV 250
           + FG + ++  +A+ V K+ A C  CG  A  T R              LIG  + Y   
Sbjct: 123 KPFGPIPELXAIAEFVDKIQAICVVCGNPATRTQRLINGKPAFYDDPVVLIGAXESYEAR 182
Query: 251 CRQHYVSGQ 259
           CR+ +V  Q
Sbjct: 183 CRKCHVVPQ 191

>pdb|2ORW|A Chain A, Thermotoga Maritima Thymidine Kinase 1 Like Enzyme In Complex With Tp4a Length = 184

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 7/181 (3%)
Query: 77  SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC 136
           SG++ VI GPM++GKTT LL  ++      + VAV K   D+RY    IV+H G  +   
Sbjct: 2   SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAH 61
Query: 137 ALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFE-DLYDFCREAADHDGKTVIVAGLDGDYL 195
            +      R+    D       + IDE QFF   L++  ++  D  G  V  AGLD  + 
Sbjct: 62  VIERPEEMRKYIEEDTRG----VFIDEVQFFNPSLFEVVKDLLDR-GIDVFCAGLDLTHK 116
Query: 196 RRSFGSVIDIIPLADSVTKLTARCEFCGK-RAFFTLRXXXXXXXXLIGGSDIYMPVCRQH 254
           +  F +   ++ LAD+V K  A C  CG+  A  TL+         +GG + Y+ VCR  
Sbjct: 117 QNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDC 176
Query: 255 Y 255
           Y
Sbjct: 177 Y 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	280
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	5e-81
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	5e-80
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	6e-80
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	2e-79
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	2e-79
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	4e-78
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	3e-76

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Length = 191

 Score =  241 bits (617), Expect = 5e-81
 Identities = 62/189 (32%), Positives = 91/189 (48%), Gaps = 10/189 (5%)

Query: 77  SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC 136
            G + VIVGPM++GK+  L+RRI+      + + V K   D RY  + +V+H G K    
Sbjct: 7   HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAV 66

Query: 137 ALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLR 196
           A+       + F  D     +VI IDE QFF+D            G+ VI AGLD D+  
Sbjct: 67  AIKNSREILKYFEED----TEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDFRG 122

Query: 197 RSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE------ETKTELIGGSDIYMPV 250
           + FG + +++ +A+ V K+ A C  CG  A  T R         +    LIG  + Y   
Sbjct: 123 KPFGPIPELMAIAEFVDKIQAICVVCGNPATRTQRLINGKPAFYDDPVVLIGAMESYEAR 182

Query: 251 CRQHYVSGQ 259
           CR+ +V  Q
Sbjct: 183 CRKCHVVPQ 191

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Length = 223

 Score =  240 bits (614), Expect = 5e-80
 Identities = 65/191 (34%), Positives = 89/191 (46%), Gaps = 8/191 (4%)

Query: 72  SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGV 131
           + S   G I  I GPMFAGKT  L+RR+           V K   DTR    +I +  G 
Sbjct: 6   AFSKKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSI-RNIQSRTGT 64

Query: 132 KLPCCALTTLSSFRQKFGSDAY-DQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGL 190
            LP   + +         S+++ D+  VIGIDE QFF+D           +G  VI++GL
Sbjct: 65  SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGL 124

Query: 191 DGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE------ETKTELIGGS 244
           D ++    FG +  +   AD +TKLTA C  CG  A  +LRK +            IG  
Sbjct: 125 DKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKIDGKHADYNDDIVKIGCQ 184

Query: 245 DIYMPVCRQHY 255
           + Y  VCR H+
Sbjct: 185 EFYSAVCRHHH 195

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Length = 214

 Score =  239 bits (612), Expect = 6e-80
 Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 10/186 (5%)

Query: 77  SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC 136
           +G I VI G MF+GK+  L+RR++      ++  V K   D RY  + +V+H+G+K+   
Sbjct: 27  NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAV 86

Query: 137 ALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLR 196
            ++      +       +++DVI IDE QFF+       +   + G  VIVAGLD D+  
Sbjct: 87  PVSASKDIFKH----ITEEMDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQDFRG 142

Query: 197 RSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE------ETKTELIGGSDIYMPV 250
             FG V  ++ +A+ VTKL A C  CG  A  T R  +      +    L+G S+ Y P 
Sbjct: 143 LPFGQVPQLMAIAEHVTKLQAVCSACGSPASRTQRLIDGEPAAFDDPIILVGASESYEPR 202

Query: 251 CRQHYV 256
           CR  + 
Sbjct: 203 CRHCHA 208

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Length = 195

 Score =  237 bits (607), Expect = 2e-79
 Identities = 82/193 (42%), Positives = 110/193 (56%), Gaps = 7/193 (3%)

Query: 63  QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGL 122
            + + H     S   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY  
Sbjct: 5   HHHHHHLVPRGSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS- 63

Query: 123 DSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDG 182
            S  THD   +       L    Q+        V VIGIDE QFF D+ +FC   A+  G
Sbjct: 64  SSFCTHDRNTMEALPACLLRDVAQE-----ALGVAVIGIDEGQFFPDIVEFCEAMANA-G 117

Query: 183 KTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIG 242
           KTVIVA LDG + R+ FG++++++PLA+SV KLTA C  C + A +T R   E + E+IG
Sbjct: 118 KTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIG 177

Query: 243 GSDIYMPVCRQHY 255
           G+D Y  VCR  Y
Sbjct: 178 GADKYHSVCRLCY 190

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Length = 219

 Score =  238 bits (609), Expect = 2e-79
 Identities = 63/189 (33%), Positives = 92/189 (48%), Gaps = 10/189 (5%)

Query: 74  SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKL 133
           +  SG I  I G MF+GK+  L+RR++      + V V K   D RY  + +V+H+G  +
Sbjct: 24  TYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAI 83

Query: 134 PCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGD 193
               ++  S             VDVIGIDE QFF+D      E    DG  VIVAGLD D
Sbjct: 84  EAINISKASEIMTH----DLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMD 139

Query: 194 YLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE------ETKTELIGGSDIY 247
           +    F  +  ++ +++ VTKL A C  CG  +  T R         +    L+G ++ Y
Sbjct: 140 FRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESY 199

Query: 248 MPVCRQHYV 256
            P CR H++
Sbjct: 200 EPRCRAHHI 208

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Length = 184

 Score =  233 bits (598), Expect = 4e-78
 Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 7/181 (3%)

Query: 77  SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC 136
           SG++ VI GPM++GKTT LL  ++      + VAV K   D+RY    IV+H G  +   
Sbjct: 2   SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAH 61

Query: 137 ALTTLSSFRQKFGSDAYDQVDVIGIDEAQFF-EDLYDFCREAADHDGKTVIVAGLDGDYL 195
            +      R+    D       + IDE QFF   L++  ++  D  G  V  AGLD  + 
Sbjct: 62  VIERPEEMRKYIEED----TRGVFIDEVQFFNPSLFEVVKDLLDR-GIDVFCAGLDLTHK 116

Query: 196 RRSFGSVIDIIPLADSVTKLTARCEFCGKR-AFFTLRKTEETKTELIGGSDIYMPVCRQH 254
           +  F +   ++ LAD+V K  A C  CG+  A  TL+     +   +GG + Y+ VCR  
Sbjct: 117 QNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDC 176

Query: 255 Y 255
           Y
Sbjct: 177 Y 177

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Length = 234

 Score =  231 bits (590), Expect = 3e-76
 Identities = 82/185 (44%), Positives = 108/185 (58%), Gaps = 7/185 (3%)

Query: 72  SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGV 131
           S S   G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY   S  THD  
Sbjct: 13  SPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRN 71

Query: 132 KLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLD 191
            +       L    Q+        V VIGIDE QFF D+ +FC   A+  GKTVIVA LD
Sbjct: 72  TMEALPACLLRDVAQE-----ALGVAVIGIDEGQFFPDIVEFCEAMANA-GKTVIVAALD 125

Query: 192 GDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVC 251
           G + R+ FG++++++PLA+SV KLTA C  C + A +T R   E + E+IGG+D Y  VC
Sbjct: 126 GTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVC 185

Query: 252 RQHYV 256
           R  Y 
Sbjct: 186 RLCYF 190

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	280
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.98
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.98
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.98
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.98
1g6h_A	257	High-affinity branched-chain amino acid transport	99.98
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.98
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.98
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.97
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.97
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.97
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.97
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.97
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.97
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.97
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.97
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.97
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.97
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.97
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.97
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.97
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.97
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.97
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.96
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.96
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.96
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.96
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.96
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.95
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.95
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.95
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.95
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.95
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.94
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.94
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.94
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.93
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.93
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.93
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.93
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.93
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.93
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.91
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.91
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.91
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.9
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	99.9
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.9
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.9
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.9
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.9
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.89
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	99.88
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	99.88
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.87
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	99.87
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	99.87
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.85
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	99.85
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.84
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	99.84
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.83
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.81
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.81
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.81
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.8
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.79
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.77
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.77
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.77
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.77
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.76
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.76
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.74
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.74
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.73
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.71
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.69
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.69
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.68
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.66
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.65
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.64
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.64
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.62
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.61
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.61
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.6
2og2_A	359	Putative signal recognition particle receptor; nuc	99.59
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.53
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.53
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.52
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.51
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.51
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.5
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.49
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.48
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.45
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.44
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.41
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.38
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.38
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.38
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.38
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.37
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.36
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.35
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.34
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.34
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.34
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.34
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.31
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.26
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.25
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.23
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.23
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.19
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.18
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.17
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.17
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.12
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.08
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.06
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.99
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.98
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	98.93
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.91
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.83
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.82
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.81
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.8
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.8
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.79
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.79
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.75
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.73
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.72
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.72
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.71
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.71
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.7
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.68
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.61
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.61
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.59
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.59
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.54
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.54
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.51
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.48
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.48
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.46
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.45
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.42
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.41
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.4
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.4
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.38
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.38
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.31
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.31
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.29
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.28
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.27
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.27
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.25
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.24
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.24
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.23
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.22
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.22
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.2
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	98.19
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.19
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.16
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.16
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.14
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.14
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.13
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.12
1xp8_A	366	RECA protein, recombinase A; recombination, radior	98.12
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.1
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.09
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.09
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.07
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.07
3bos_A	242	Putative DNA replication factor; P-loop containing	98.06
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.01
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.0
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.0
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.0
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.99
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.96
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.96
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.95
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.95
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.95
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.95
3ice_A	422	Transcription termination factor RHO; transcriptio	97.93
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.93
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.92
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.9
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.9
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.89
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.89
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.89
3kta_B	173	Chromosome segregation protein SMC; structural mai	97.87
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.86
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.86
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.85
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.82
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.82
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.81
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.81
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.8
3io5_A	333	Recombination and repair protein; storage dimer, i	97.74
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.71
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.71
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.71
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.7
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.67
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.66
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.65
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.63
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.62
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.62
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.61
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.61
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.6
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.6
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.59
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.59
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.58
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.57
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.57
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.54
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.52
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.52
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.5
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.49
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.47
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.47
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.47
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.45
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.44
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.43
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.41
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.4
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.39
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.39
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.37
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.37
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.35
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.32
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.32
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.32
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.3
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.27
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.27
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.27
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.27
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.25
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.25
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.24
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.22
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.21
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.19
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.18
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.17
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.17
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.17
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.16
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.16
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.14
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.14
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.13
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.12
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.1
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.09
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.09
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.08
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.06
2qgz_A	308	Helicase loader, putative primosome component; str	97.05
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.04
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.01
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.0
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.0
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.98
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.98
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.97
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.95
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.92
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.91
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.88
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.88
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.87
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.87
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.86
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.85
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.85
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.84
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.84
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.84
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.83
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.81
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.81
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.81
1via_A	175	Shikimate kinase; structural genomics, transferase	96.8
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.8
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.79
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.79
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.78
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.77
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.77
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.76
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.75
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.75
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.74
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.72
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.72
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.72
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.71
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.67
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.63
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.63
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.62
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.61
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.61
3co5_A	143	Putative two-component system transcriptional RES	96.6
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.59
3pvs_A	447	Replication-associated recombination protein A; ma	96.57
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.56
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.53
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.53
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.53
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.53
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.49
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.48
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.45
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.44
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.42
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.41
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.41
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.4
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.39
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.39
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.38
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.38
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.37
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.32
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.32
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.31
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.3
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.29
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.29
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.28
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.28
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.28
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.2
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.2
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.17
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.16
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.16
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.15
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.12
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.11
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.11
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.1
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.08
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.05
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.04
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.04
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.04
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.02
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.01
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.99
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	95.99
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.98
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.98
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.97
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.96
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.92
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.92
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.91
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.91
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.91
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.9
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.89
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.89
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.88
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.87
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.87
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.86
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.86
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.82
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.82
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.82
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.81
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.8
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.8
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.78
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.78
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.78
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.77
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.76
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.74
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.72
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.7
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.7
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.7
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.68
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.68
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.68
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.67
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.66
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.66
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.66
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.65
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.63
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.6
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.59
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.58
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.57
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.56
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.55
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.54
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.54
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.52
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.51
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.51
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.5
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.5
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.48
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.48
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.48
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.46
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.45
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.44
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.44
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	95.42
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.42
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.41
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.4
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.4
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.39
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.37
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.37
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.37
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.36
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.35
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.34
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.34
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.33
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.31
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.29
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.28
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.28
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.27
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.26
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.25
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.23
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	95.22
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.22
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.21
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.21
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.21
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.2
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.2
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.2
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.19
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.18
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.16
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	95.14
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.13
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.13
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.11
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.11
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.1
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.09
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.09
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.09
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.08
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.08
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.05
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.05
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.05
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	95.04
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.04
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.03
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.03
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.02
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.01
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.01
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.01

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=1.8e-33  Score=263.43  Aligned_cols=171  Identities=16%  Similarity=0.158  Sum_probs=125.1

Q ss_pred             CCccEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------
Q 023563           49 IHSMVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------  116 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------  116 (280)
                      ..+||+++||+|+|++    ..+|+||||+|++||++||+||||||||||+ ++|+|+.. ....|.+...+.       
T Consensus        21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLl-r~i~GL~~p~~G~I~i~G~~i~~~~~~~   99 (366)
T 3tui_C           21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-RCVNLLERPTEGSVLVDGQELTTLSESE   99 (366)
T ss_dssp             --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred             CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHH-HHHhcCCCCCceEEEECCEECCcCCHHH
Confidence            3468999999999963    5699999999999999999999999999999 99999832 122222111100       


Q ss_pred             --ccccccceeeeecccccc---------------------------cccccCchHHHHHH--------------hhhhc
Q 023563          117 --DTRYGLDSIVTHDGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAY  153 (280)
Q Consensus       117 --~~~~~~~~v~~~~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~  153 (280)
                        ..+..+++++|.......                           .+...++.++.+++              |+||+
T Consensus       100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~  179 (366)
T 3tui_C          100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA  179 (366)
T ss_dssp             HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred             HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence              012334455543221111                           11112222222211              67999


Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|++|||||||+.+      .++++|++++++.|+|||+||||++++.+          +||||++|++ ++++.|+++
T Consensus       180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~----------~aDrv~vl~~G~iv~~g~~~  249 (366)
T 3tui_C          180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR----------ICDCVAVISNGELIEQDTVS  249 (366)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH----------HCSEEEEEETTEEEECCBHH
T ss_pred             cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEEcCHH
Confidence            999999999997654      58999999987779999999999999987          9999999999 999999999


Q ss_pred             eeee
Q 023563          227 FFTL  230 (280)
Q Consensus       227 ~~~~  230 (280)
                      +++.
T Consensus       250 ev~~  253 (366)
T 3tui_C          250 EVFS  253 (366)
T ss_dssp             HHHS
T ss_pred             HHHh
Confidence            9873

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=1.1e-33  Score=256.08  Aligned_cols=168  Identities=14%  Similarity=0.145  Sum_probs=121.2

Q ss_pred             CccEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------ccc
Q 023563           50 HSMVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTR  119 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~  119 (280)
                      +++|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....|.+.....        ..+
T Consensus         5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl-~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~   83 (275)
T 3gfo_A            5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLF-QNFNGILKPSSGRILFDNKPIDYSRKGIMKLR   83 (275)
T ss_dssp             CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred             CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence            358999999999975 5699999999999999999999999999999 99999732 111221111100        011


Q ss_pred             cccceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCC
Q 023563          120 YGLDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVD  157 (280)
Q Consensus       120 ~~~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~  157 (280)
                      ..+++++|... ..+                           ..+...++.++.++.              |+||+.+|+
T Consensus        84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~  163 (275)
T 3gfo_A           84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK  163 (275)
T ss_dssp             HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            22333333211 000                           011122222222211              678999999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHH-hhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAA-DHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~-~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +||||||++.+      .++++|++++ ++ |+|||++|||++++.+          +||+|++|++ ++++.|+++++.
T Consensus       164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~----------~~drv~~l~~G~i~~~g~~~~~~  232 (275)
T 3gfo_A          164 VLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPL----------YCDNVFVMKEGRVILQGNPKEVF  232 (275)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGG----------GCSEEEEEETTEEEEEECHHHHT
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEECCHHHHh
Confidence            99999997654      5889999997 55 9999999999999986          9999999999 999999999886

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=3.2e-33  Score=261.27  Aligned_cols=170  Identities=19%  Similarity=0.166  Sum_probs=125.7

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecC-Ccccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKS-NKDTRYG  121 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~-~~~~~~~  121 (280)
                      ++|+++||+|+|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+..        +|+++..... ....+..
T Consensus         3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~   81 (359)
T 3fvq_A            3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLL-RCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR   81 (359)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred             cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHH-HHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence            379999999999999999999999999999999999999999999 99999832        3443311000 0111234


Q ss_pred             cceeeeecccccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563          122 LDSIVTHDGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIG  160 (280)
Q Consensus       122 ~~~v~~~~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLl  160 (280)
                      +++++|.......                           .+...++.++.+++              |+||+.+|++||
T Consensus        82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLL  161 (359)
T 3fvq_A           82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELIL  161 (359)
T ss_dssp             CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            5555553221100                           01111222222211              679999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~  231 (280)
                      ||||++.+      ++++.|.++.++.|+|+|+||||++++.+          +||||++|++ +++..|+++++..+
T Consensus       162 LDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~----------~aDri~vl~~G~i~~~g~~~el~~~  229 (359)
T 3fvq_A          162 LDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQ----------YADRIAVMKQGRILQTASPHELYRQ  229 (359)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH----------HCCEEEEEECCEEEEEeCHHHHHhC
Confidence            99997654      47777777776679999999999999986          9999999999 99999999988643

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=3.6e-33  Score=262.73  Aligned_cols=169  Identities=18%  Similarity=0.150  Sum_probs=124.5

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Ccccccccceee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLDSIV  126 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~~v~  126 (280)
                      +|+++||+|+|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....|.+-..    ....+..+++++
T Consensus         3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf   81 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLL-RMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF   81 (381)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHH-HHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence            69999999999999999999999999999999999999999999 99999832 1112211110    011122334444


Q ss_pred             eeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563          127 THDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ  165 (280)
Q Consensus       127 ~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~  165 (280)
                      |...+..                           ..+...++..+.+++              |+||+.+|++||||||+
T Consensus        82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt  161 (381)
T 3rlf_A           82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  161 (381)
T ss_dssp             TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4221110                           011122232222221              67999999999999997


Q ss_pred             cH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563          166 FF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       166 ~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~  231 (280)
                      +.      .++++.|+++.++.|+|+|+||||++++.+          +||||++|++ +++..|+++++..+
T Consensus       162 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~----------~aDri~vl~~G~i~~~g~~~~l~~~  224 (381)
T 3rlf_A          162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMT----------LADKIVVLDAGRVAQVGKPLELYHY  224 (381)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEEeCHHHHHhC
Confidence            64      458899999987779999999999999986          9999999999 99999999988643

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.98  E-value=9.8e-33  Score=248.01  Aligned_cols=167  Identities=19%  Similarity=0.189  Sum_probs=123.3

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------------
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------------  116 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------------  116 (280)
                      ++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....|.+.....             
T Consensus         5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl-k~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   83 (262)
T 1b0u_A            5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFL-RCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA   83 (262)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred             ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence            479999999999999999999999999999999999999999999 99999832 112221111000             


Q ss_pred             ------ccccccceeeeeccc----------------------------ccccccccCchHH-HHHH-------------
Q 023563          117 ------DTRYGLDSIVTHDGV----------------------------KLPCCALTTLSSF-RQKF-------------  148 (280)
Q Consensus       117 ------~~~~~~~~v~~~~~~----------------------------~~~~~~~~~l~~~-~~~~-------------  148 (280)
                            ..+..+++++|....                            ....+...++.++ .++.             
T Consensus        84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~  163 (262)
T 1b0u_A           84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS  163 (262)
T ss_dssp             CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred             ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence                  001122333332110                            0011223344444 3322             


Q ss_pred             -hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563          149 -GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       149 -a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                       |+||+.+|++||||||++.+      .++++|++++++ |+|||++|||++++.+          +||+|++|++ +++
T Consensus       164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~----------~~d~v~~l~~G~i~  232 (262)
T 1b0u_A          164 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARH----------VSSHVIFLHQGKIE  232 (262)
T ss_dssp             HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHH----------HCSEEEEEETTEEE
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEE
Confidence             67899999999999997654      588999999876 9999999999999986          9999999999 999


Q ss_pred             cccCcceee
Q 023563          221 FCGKRAFFT  229 (280)
Q Consensus       221 ~~g~~~~~~  229 (280)
                      +.|+++++.
T Consensus       233 ~~g~~~~~~  241 (262)
T 1b0u_A          233 EEGDPEQVF  241 (262)
T ss_dssp             EEECHHHHH
T ss_pred             EeCCHHHHH
Confidence            999988876

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.98  E-value=2.9e-33  Score=252.03  Aligned_cols=168  Identities=18%  Similarity=0.203  Sum_probs=121.5

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee-------------------EE
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN-------------------VA  110 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~-------------------i~  110 (280)
                      ++|+++|++++|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....                   ++
T Consensus        10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~   88 (266)
T 4g1u_C           10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLL-RLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA   88 (266)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHH-HHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred             ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence            489999999999999999999999999999999999999999999 99999842 2222                   33


Q ss_pred             EecCCcccccc--cceeeee--cc--------cccccccccCchHHHHH--------------Hhhhhcc------CCCE
Q 023563          111 VIKSNKDTRYG--LDSIVTH--DG--------VKLPCCALTTLSSFRQK--------------FGSDAYD------QVDV  158 (280)
Q Consensus       111 ~~~~~~~~~~~--~~~v~~~--~~--------~~~~~~~~~~l~~~~~~--------------~a~aL~~------~p~l  158 (280)
                      +++|.......  +...+..  ..        .....+...++.++.++              .|+||+.      +|++
T Consensus        89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l  168 (266)
T 4g1u_C           89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW  168 (266)
T ss_dssp             EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred             EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence            44433221110  0000000  00        00000111122111111              1678998      9999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||||+.+      +++++|++++++.|+|||++|||++++.+          +||+|++|++ ++++.|+++++.
T Consensus       169 LllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~----------~~d~v~vl~~G~i~~~g~~~~~~  236 (266)
T 4g1u_C          169 LFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAAL----------YADRIMLLAQGKLVACGTPEEVL  236 (266)
T ss_dssp             EEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHH----------HCSEEEEEETTEEEEEECHHHHC
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHh
Confidence            9999997654      58899999987656899999999999986          9999999999 999999999887

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.98  E-value=1.8e-32  Score=246.64  Aligned_cols=167  Identities=16%  Similarity=0.159  Sum_probs=121.2

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------ccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTRYG  121 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~~~  121 (280)
                      ++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....|.+.....        ..+..
T Consensus        23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~  101 (263)
T 2olj_A           23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFL-RCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE  101 (263)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred             heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHH-HHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence            479999999999999999999999999999999999999999999 99999843 122222111000        00112


Q ss_pred             cceeeeeccccc----------------------------ccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563          122 LDSIVTHDGVKL----------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVI  159 (280)
Q Consensus       122 ~~~v~~~~~~~~----------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lL  159 (280)
                      +++++|......                            ..+...++.++.++.              |+||+.+|++|
T Consensus       102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ll  181 (263)
T 2olj_A          102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIM  181 (263)
T ss_dssp             EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEE
Confidence            333333211100                            001111222211111              67899999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||++.+      .++++|++++++ |+|||++|||++++.+          +||++++|++ ++++.|+++++.
T Consensus       182 lLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~  247 (263)
T 2olj_A          182 LFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFARE----------VGDRVLFMDGGYIIEEGKPEDLF  247 (263)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHH----------HCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEEECCHHHHH
Confidence            999997654      588999999876 9999999999999986          9999999999 999999988876

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.98  E-value=2.9e-33  Score=248.34  Aligned_cols=168  Identities=15%  Similarity=0.167  Sum_probs=119.5

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-------------e
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-------------N  108 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-------------~  108 (280)
                      .+||+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..        +|.             .
T Consensus         4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   82 (240)
T 1ji0_A            4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTL-SAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG   82 (240)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred             CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence            4589999999999998999999999999999999999999999999 99999832        221             1


Q ss_pred             EEEecCCcccccc--cceeee--e-ccc--------cccccccc-CchHHHHH--------------HhhhhccCCCEEE
Q 023563          109 VAVIKSNKDTRYG--LDSIVT--H-DGV--------KLPCCALT-TLSSFRQK--------------FGSDAYDQVDVIG  160 (280)
Q Consensus       109 i~~~~~~~~~~~~--~~~v~~--~-~~~--------~~~~~~~~-~l~~~~~~--------------~a~aL~~~p~lLl  160 (280)
                      +++++|+......  +...+.  . ...        ....+... ++.++.++              .|+||+.+|++||
T Consensus        83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lll  162 (240)
T 1ji0_A           83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLM  162 (240)
T ss_dssp             EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            4444443221100  000000  0 000        00000001 01111111              1678999999999


Q ss_pred             EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||||++.+      .++++|++++++ |+|||++|||++++.+          +||++++|++ ++++.|+++++.
T Consensus       163 LDEPts~LD~~~~~~l~~~l~~~~~~-g~tvi~vtHd~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~  227 (240)
T 1ji0_A          163 MDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNALGALK----------VAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             EECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHHHHHH----------HCSEEEEEETTEEEEEEEHHHHH
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHh
Confidence            99997654      588899998764 9999999999998876          9999999999 998888888765

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.98  E-value=1.8e-33  Score=252.00  Aligned_cols=165  Identities=16%  Similarity=0.168  Sum_probs=118.3

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cccccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~  122 (280)
                      ++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....       ..+..+
T Consensus         6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl-k~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   84 (257)
T 1g6h_A            6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLI-NVITGFLKADEGRVYFENKDITNKEPAELYHYGI   84 (257)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred             cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence            479999999999999999999999999999999999999999999 99999832 112221111000       001122


Q ss_pred             ceeeeecccc----------c------------------------------ccccccCchHHHHHH--------------
Q 023563          123 DSIVTHDGVK----------L------------------------------PCCALTTLSSFRQKF--------------  148 (280)
Q Consensus       123 ~~v~~~~~~~----------~------------------------------~~~~~~~l~~~~~~~--------------  148 (280)
                      ++++|.....          .                              ..+...++.++.++.              
T Consensus        85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~i  164 (257)
T 1g6h_A           85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI  164 (257)
T ss_dssp             EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred             EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHH
Confidence            3333221100          0                              001111221111111              


Q ss_pred             hhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          149 GSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      |+||+.+|++||||||++.      ..++++|++++++ |+|||++|||++++.+          +||++++|++ ++++
T Consensus       165 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~----------~~d~v~~l~~G~i~~  233 (257)
T 1g6h_A          165 GRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLN----------YIDHLYVMFNGQIIA  233 (257)
T ss_dssp             HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGG----------GCSEEEEEETTEEEE
T ss_pred             HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEE
Confidence            6789999999999999765      4588999999876 9999999999999876          9999999999 9988


Q ss_pred             ccCcce
Q 023563          222 CGKRAF  227 (280)
Q Consensus       222 ~g~~~~  227 (280)
                      .|++++
T Consensus       234 ~g~~~~  239 (257)
T 1g6h_A          234 EGRGEE  239 (257)
T ss_dssp             EEESHH
T ss_pred             EeCHHH
Confidence            888887

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.98  E-value=3.3e-32  Score=243.93  Aligned_cols=168  Identities=16%  Similarity=0.133  Sum_probs=120.5

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-----------eEE
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-----------NVA  110 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-----------~i~  110 (280)
                      .++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..        .|.           .++
T Consensus        13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~   91 (256)
T 1vpl_A           13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTL-RIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS   91 (256)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred             CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence            3589999999999999999999999999999999999999999999 99999832        221           234


Q ss_pred             EecCCcccccc--cceeeee----cc--------cccccccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563          111 VIKSNKDTRYG--LDSIVTH----DG--------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGID  162 (280)
Q Consensus       111 ~~~~~~~~~~~--~~~v~~~----~~--------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD  162 (280)
                      +++|.......  +...+..    ..        .....+...++.++.++.              |+||+.+|++||||
T Consensus        92 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD  171 (256)
T 1vpl_A           92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD  171 (256)
T ss_dssp             EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            44443221100  0000000    00        000011111222221111              67899999999999


Q ss_pred             CcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          163 EAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       163 EP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ||++.      ..++++|++++++ |+|||++|||++++.+          +||++++|++ ++++.|+++++.
T Consensus       172 EPts~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~  234 (256)
T 1vpl_A          172 EPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEF----------LCDRIALIHNGTIVETGTVEELK  234 (256)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHHHHTT----------TCSEEEEEETTEEEEEEEHHHHH
T ss_pred             CCccccCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHH----------HCCEEEEEECCEEEEecCHHHHH
Confidence            99765      4588999998765 9999999999999986          8999999999 999889888875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.98  E-value=3.7e-32  Score=238.85  Aligned_cols=161  Identities=12%  Similarity=0.074  Sum_probs=114.3

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc---------cc-
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD---------TR-  119 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~---------~~-  119 (280)
                      +||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+......         .+ 
T Consensus         3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   81 (224)
T 2pcj_A            3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLL-YILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN   81 (224)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHH-HHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred             cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence            479999999999999999999999999999999999999999999 99999843 1222221111000         00 


Q ss_pred             cccceeeeecccccc---------------------------cccccCchHHHHH--------------HhhhhccCCCE
Q 023563          120 YGLDSIVTHDGVKLP---------------------------CCALTTLSSFRQK--------------FGSDAYDQVDV  158 (280)
Q Consensus       120 ~~~~~v~~~~~~~~~---------------------------~~~~~~l~~~~~~--------------~a~aL~~~p~l  158 (280)
                      ..+++++|.......                           .+...++.++.++              .|+||+.+|++
T Consensus        82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l  161 (224)
T 2pcj_A           82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL  161 (224)
T ss_dssp             HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE
T ss_pred             CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            123333332111100                           0111111111111              16789999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      ||||||++.+      .++++|++++++ |+|||++|||++++ +          +||++++|++ ++++.|+
T Consensus       162 llLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~----------~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          162 LFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA-E----------LTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHH-T----------TSSEEEEEETTEEEEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-H----------hCCEEEEEECCEEEEEee
Confidence            9999997654      588999999877 99999999999987 5          8999999999 8887765

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.97  E-value=5.9e-32  Score=239.24  Aligned_cols=166  Identities=18%  Similarity=0.188  Sum_probs=116.7

Q ss_pred             cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------
Q 023563           52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------  107 (280)
Q Consensus        52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------  107 (280)
                      ||+++||+++|++    +.+|+||||+|++||+++|+||||||||||+ ++|+|+..        +|.            
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   79 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPTEGEVYIDNIKTNDLDDDELTK   79 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence            5899999999963    4699999999999999999999999999999 99999732        221            


Q ss_pred             ----eEEEecCCcccccc--cceeee-----e--cc--------cccccccccCchHHH-H------------H--Hhhh
Q 023563          108 ----NVAVIKSNKDTRYG--LDSIVT-----H--DG--------VKLPCCALTTLSSFR-Q------------K--FGSD  151 (280)
Q Consensus       108 ----~i~~~~~~~~~~~~--~~~v~~-----~--~~--------~~~~~~~~~~l~~~~-~------------~--~a~a  151 (280)
                          .+++++|+......  +...+.     .  ..        .....+...++.+.. +            +  .|+|
T Consensus        80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra  159 (235)
T 3tif_A           80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA  159 (235)
T ss_dssp             HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred             HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence                35666665432111  100000     0  00        000111122222211 1            1  1689


Q ss_pred             hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      |+.+|++||||||++.+      .++++|++++++.|+|||++|||++.+ +          +||+|++|++ +++..++
T Consensus       160 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~----------~~d~i~~l~~G~i~~~~~  228 (235)
T 3tif_A          160 LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-R----------FGERIIYLKDGEVEREEK  228 (235)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-T----------TSSEEEEEETTEEEEEEE
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-H----------hCCEEEEEECCEEEEEcC
Confidence            99999999999997654      588999999766699999999999965 4          8999999999 9998888


Q ss_pred             cceee
Q 023563          225 RAFFT  229 (280)
Q Consensus       225 ~~~~~  229 (280)
                      ++++.
T Consensus       229 ~~~~~  233 (235)
T 3tif_A          229 LRGFD  233 (235)
T ss_dssp             CC---
T ss_pred             hhhhc
Confidence            87754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.97  E-value=4.7e-32  Score=253.91  Aligned_cols=168  Identities=11%  Similarity=0.095  Sum_probs=122.7

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Ccccccccceee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLDSIV  126 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~~v~  126 (280)
                      +|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+-..    ....+..+++++
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~   81 (362)
T 2it1_A            3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLL-YTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF   81 (362)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHH-HHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence            69999999999988999999999999999999999999999999 99999843 1122211110    001122334444


Q ss_pred             eeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563          127 THDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ  165 (280)
Q Consensus       127 ~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~  165 (280)
                      |......                           ..+...++.++.+++              |+||+.+|++||||||+
T Consensus        82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~  161 (362)
T 2it1_A           82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL  161 (362)
T ss_dssp             TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence            3221110                           011112222221111              67899999999999997


Q ss_pred             cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      +.+      ++++.|+++.++.|+|+|++|||++++.+          +||+|++|++ +++..|+++++..
T Consensus       162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~----------~adri~vl~~G~i~~~g~~~~~~~  223 (362)
T 2it1_A          162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALA----------MADRIAVIREGEILQVGTPDEVYY  223 (362)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHh
Confidence            654      58889999877669999999999999976          9999999999 9999999988863

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.97  E-value=1.1e-31  Score=252.24  Aligned_cols=164  Identities=18%  Similarity=0.139  Sum_probs=125.6

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEE------ecCCcc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAV------IKSNKD  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~------~~~~~~  117 (280)
                      +|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.        ++|+++..      .++   
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~---   78 (372)
T 1g29_1            3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTL-RMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP---   78 (372)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEEEEEGGGTEECCG---
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHH-HHHHcCCCCCccEEEECCEECccccccccCCH---
Confidence            69999999999999999999999999999999999999999999 9999983        34444432      111   


Q ss_pred             cccccceeeeeccccccc----------------------------ccccCchHHHHHH--------------hhhhccC
Q 023563          118 TRYGLDSIVTHDGVKLPC----------------------------CALTTLSSFRQKF--------------GSDAYDQ  155 (280)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~----------------------------~~~~~l~~~~~~~--------------a~aL~~~  155 (280)
                      .+..+++++|.... ++.                            +...++.++.+++              |+||+.+
T Consensus        79 ~~r~ig~v~Q~~~l-~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~  157 (372)
T 1g29_1           79 KDRDIAMVFQSYAL-YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK  157 (372)
T ss_dssp             GGSSEEEECSCCCC-CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred             hHCCEEEEeCCCcc-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            12345556553222 111                            1111222221111              6789999


Q ss_pred             CCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          156 VDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       156 p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      |++||||||++.      .++++.|+++.++.|+|+|+||||++++..          +||+|++|++ +++..|+++++
T Consensus       158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~----------~adri~vl~~G~i~~~g~~~~l  227 (372)
T 1g29_1          158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMT----------MGDRIAVMNRGVLQQVGSPDEV  227 (372)
T ss_dssp             CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHH
T ss_pred             CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH----------hCCEEEEEeCCEEEEeCCHHHH
Confidence            999999999664      458889999877669999999999999976          9999999999 99999999888


Q ss_pred             ee
Q 023563          229 TL  230 (280)
Q Consensus       229 ~~  230 (280)
                      ..
T Consensus       228 ~~  229 (372)
T 1g29_1          228 YD  229 (372)
T ss_dssp             HH
T ss_pred             Hh
Confidence            63

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.97  E-value=3.7e-32  Score=246.47  Aligned_cols=172  Identities=17%  Similarity=0.080  Sum_probs=121.8

Q ss_pred             CCCCCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------
Q 023563           46 PKFIHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------  116 (280)
Q Consensus        46 ~~~~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------  116 (280)
                      |....++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....|.+.....        
T Consensus        15 ~~~~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~~~~~~~~~~   93 (279)
T 2ihy_A           15 PRGSHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLL-NILNAYEPATSGTVNLFGKMPGKVGYSAE   93 (279)
T ss_dssp             ----CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTBCCC---CCHH
T ss_pred             CCCCCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCeEEEECCEEcccccCCHH
Confidence            33445689999999999999999999999999999999999999999999 99999843 222222221110        


Q ss_pred             ccccccceeeeeccccc---------------------------------ccccccCchHHHHHH--------------h
Q 023563          117 DTRYGLDSIVTHDGVKL---------------------------------PCCALTTLSSFRQKF--------------G  149 (280)
Q Consensus       117 ~~~~~~~~v~~~~~~~~---------------------------------~~~~~~~l~~~~~~~--------------a  149 (280)
                      ..+..+++++|.....+                                 ..+...++.++.++.              |
T Consensus        94 ~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lA  173 (279)
T 2ihy_A           94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIA  173 (279)
T ss_dssp             HHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             HHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence            01122333333211000                                 001111222111111              6


Q ss_pred             hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEE--EEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563          150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTV--IVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE  220 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tv--iivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~  220 (280)
                      +||+.+|++||||||++.+      .++++|++++++ |+||  |++|||++++.+          +||+|++|++ +++
T Consensus       174 raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~----------~~d~v~~l~~G~i~  242 (279)
T 2ihy_A          174 RALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITA----------NFSKILLLKDGQSI  242 (279)
T ss_dssp             HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCT----------TCCEEEEEETTEEE
T ss_pred             HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHH----------hCCEEEEEECCEEE
Confidence            7899999999999997654      588999999877 9999  999999999876          9999999999 999


Q ss_pred             cccCcceee
Q 023563          221 FCGKRAFFT  229 (280)
Q Consensus       221 ~~g~~~~~~  229 (280)
                      +.|+++++.
T Consensus       243 ~~g~~~~~~  251 (279)
T 2ihy_A          243 QQGAVEDIL  251 (279)
T ss_dssp             EEEEHHHHC
T ss_pred             EECCHHHHh
Confidence            999988876

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.97  E-value=1.2e-31  Score=250.90  Aligned_cols=168  Identities=12%  Similarity=0.028  Sum_probs=123.1

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Ccccccccceee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLDSIV  126 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~~v~  126 (280)
                      +|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+...    ....+..+++++
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~   81 (359)
T 2yyz_A            3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTL-LMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF   81 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred             EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHH-HHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence            69999999999999999999999999999999999999999999 99999832 1122211110    000112233333


Q ss_pred             eecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563          127 THDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ  165 (280)
Q Consensus       127 ~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~  165 (280)
                      |.....                           ...+...++.++.+++              |+||+.+|++||||||+
T Consensus        82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~  161 (359)
T 2yyz_A           82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL  161 (359)
T ss_dssp             SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            321110                           0111222333322221              67999999999999996


Q ss_pred             cH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          166 FF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       166 ~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      +.      .++++.|+++.++.|+|+|++|||++++.+          +||+|++|++ +++..|+++++..
T Consensus       162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~----------~adri~vl~~G~i~~~g~~~~l~~  223 (359)
T 2yyz_A          162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMT----------MASRIAVFNQGKLVQYGTPDEVYD  223 (359)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHHh
Confidence            64      458889999877669999999999999976          9999999999 9999999988863

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.97  E-value=8.5e-32  Score=251.56  Aligned_cols=168  Identities=17%  Similarity=0.133  Sum_probs=125.1

Q ss_pred             cEEEcCceEEeCCee--eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEec--CCcccc
Q 023563           52 MVSPRPPLFSLQNRN--LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIK--SNKDTR  119 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~--vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~--~~~~~~  119 (280)
                      +|+++||+|+|+++.  +|+|+||+|++||+++|+||||||||||+ ++|+|+.        ++|+++....  .....+
T Consensus         3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~   81 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFM-RIIAGLDVPSTGELYFDDRLVASNGKLIVPPED   81 (353)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHH-HHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence            699999999998887  99999999999999999999999999999 9999983        2444443200  011112


Q ss_pred             cccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCE
Q 023563          120 YGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDV  158 (280)
Q Consensus       120 ~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~l  158 (280)
                      ..+++++|......                           ..+...++.++.+++              |+||+.+|++
T Consensus        82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l  161 (353)
T 1oxx_K           82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL  161 (353)
T ss_dssp             SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence            34455554322110                           001112222222211              6789999999


Q ss_pred             EEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          159 IGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       159 LlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      ||||||++.      .++++.|+++.++.|+|+|++|||++++.+          +||+|++|++ +++..|+++++..
T Consensus       162 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~----------~adri~vl~~G~i~~~g~~~~l~~  230 (353)
T 1oxx_K          162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFA----------IADRVGVLVKGKLVQVGKPEDLYD  230 (353)
T ss_dssp             EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999654      468999999977669999999999999986          9999999999 9999999988863

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.97  E-value=1.2e-31  Score=250.48  Aligned_cols=170  Identities=19%  Similarity=0.145  Sum_probs=124.6

Q ss_pred             CccEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Ccccccccc
Q 023563           50 HSMVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLD  123 (280)
Q Consensus        50 ~~~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~  123 (280)
                      .++|+++||+|+| +++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+...    ....+..++
T Consensus        12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig   90 (355)
T 1z47_A           12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTIL-RLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG   90 (355)
T ss_dssp             CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred             CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHH-HHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence            3589999999999 888899999999999999999999999999999 99999843 1222221110    011122344


Q ss_pred             eeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563          124 SIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGID  162 (280)
Q Consensus       124 ~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD  162 (280)
                      +++|......                           ..+...++.++.+++              |+||+.+|++||||
T Consensus        91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD  170 (355)
T 1z47_A           91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD  170 (355)
T ss_dssp             EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            4444221110                           011122232222221              67899999999999


Q ss_pred             CcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          163 EAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       163 EP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      ||++.      .+++++|+++.++.|+|+|++|||++++.+          +||+|++|++ +++..|+++++..
T Consensus       171 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~----------~adri~vl~~G~i~~~g~~~~l~~  235 (355)
T 1z47_A          171 EPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALE----------VADRVLVLHEGNVEQFGTPEEVYE  235 (355)
T ss_dssp             STTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHh
Confidence            99664      458889999877669999999999999986          9999999999 9999999988863

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.97  E-value=2.2e-31  Score=250.23  Aligned_cols=168  Identities=16%  Similarity=0.103  Sum_probs=123.3

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Ccccccccceee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLDSIV  126 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~~v~  126 (280)
                      +|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+...    ....+..+++++
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~   89 (372)
T 1v43_A           11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTL-RMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF   89 (372)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence            69999999999999999999999999999999999999999999 99999843 2222221110    001122344444


Q ss_pred             eecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563          127 THDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ  165 (280)
Q Consensus       127 ~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~  165 (280)
                      |.....                           ...+...++.++.+++              |+||+.+|++||||||+
T Consensus        90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~  169 (372)
T 1v43_A           90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL  169 (372)
T ss_dssp             C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            422111                           0011122333322221              67999999999999996


Q ss_pred             cH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          166 FF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       166 ~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      +.      .++++.|+++.++.|+|+|++|||++++.+          +||+|++|++ +++..|+++++..
T Consensus       170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~----------~adri~vl~~G~i~~~g~~~~l~~  231 (372)
T 1v43_A          170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT----------MGDRIAVMNRGQLLQIGSPTEVYL  231 (372)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHHh
Confidence            64      458889999877669999999999999976          9999999999 9999999988863

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.97  E-value=2.6e-31  Score=237.60  Aligned_cols=167  Identities=14%  Similarity=0.138  Sum_probs=124.3

Q ss_pred             ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-------CeeEEEecCCcccccc-
Q 023563           51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-------GRNVAVIKSNKDTRYG-  121 (280)
Q Consensus        51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-------g~~i~~~~~~~~~~~~-  121 (280)
                      +||+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+...       .+.+++++|....... 
T Consensus         3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~   81 (253)
T 2nq2_C            3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLL-DLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY   81 (253)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHH-HHHTTSSCCSEEEEEECSCEEEECSCCCCSSCC
T ss_pred             ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEEeccEEEEcCCCccCCCC
Confidence            3799999999998 88999999999999999999999999999999 999998432       2357788776532111 


Q ss_pred             -cceeeee--c---c-----------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH--
Q 023563          122 -LDSIVTH--D---G-----------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE--  168 (280)
Q Consensus       122 -~~~v~~~--~---~-----------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~--  168 (280)
                       +...+..  .   .           .....+...++.++.++.              |+||+.+|++||||||++.+  
T Consensus        82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~  161 (253)
T 2nq2_C           82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL  161 (253)
T ss_dssp             BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCH
T ss_pred             CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence             1100000  0   0           000111122332222211              67899999999999997654  


Q ss_pred             ----HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          169 ----DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       169 ----~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                          .++++|++++++.|+|||++|||++++.+          +||++++|++ + ++.|+++++.
T Consensus       162 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~----------~~d~v~~l~~G~-~~~g~~~~~~  216 (253)
T 2nq2_C          162 ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA----------IANKTLLLNKQN-FKFGETRNIL  216 (253)
T ss_dssp             HHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHH----------HCSEEEEEETTE-EEEEEHHHHC
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEEeCCe-EecCCHHHHh
Confidence                58888988876559999999999999976          9999999999 9 8889888876

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.97  E-value=1.7e-31  Score=240.34  Aligned_cols=166  Identities=20%  Similarity=0.229  Sum_probs=123.8

Q ss_pred             cEEEcCceEEeC--C---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe---------eE
Q 023563           52 MVSPRPPLFSLQ--N---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR---------NV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~--~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~---------~i  109 (280)
                      ||+++||+++|+  +   +.+|+|+||+|++||+++|+||||||||||+ ++|+|+..        +|.         .+
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i   80 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLL-QIVAGLIEPTSGDVLYDGERKKGYEIRRNI   80 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCHHHHGGGE
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEECCEECchHHhhhhE
Confidence            699999999997  5   6799999999999999999999999999999 99999732        332         35


Q ss_pred             EEecCCcc-ccc--ccceee--------eecc---cccccccccCch--HHHHHH--------------hhhhccCCCEE
Q 023563          110 AVIKSNKD-TRY--GLDSIV--------THDG---VKLPCCALTTLS--SFRQKF--------------GSDAYDQVDVI  159 (280)
Q Consensus       110 ~~~~~~~~-~~~--~~~~v~--------~~~~---~~~~~~~~~~l~--~~~~~~--------------a~aL~~~p~lL  159 (280)
                      ++++|+.. ...  .+...+        ....   .....+...++.  ++.++.              |+||+.+|++|
T Consensus        81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll  160 (266)
T 2yz2_A           81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL  160 (266)
T ss_dssp             EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            66666531 111  110000        0000   001122233444  443322              67899999999


Q ss_pred             EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||++.+      .++++|++++++ |+|||++|||++++.+          +||++++|++ +++..|+++++.
T Consensus       161 lLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~  226 (266)
T 2yz2_A          161 ILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVIN----------HVDRVVVLEKGKKVFDGTRMEFL  226 (266)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGG----------GCSEEEEEETTEEEEEEEHHHHH
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHh
Confidence            999997654      588999999876 9999999999999876          8999999999 999999988876

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.97  E-value=5.2e-31  Score=245.71  Aligned_cols=168  Identities=17%  Similarity=0.126  Sum_probs=122.5

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIV  126 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~  126 (280)
                      ||+++||+|+|+++ +|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+-...    ...+..+++++
T Consensus         1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~   78 (348)
T 3d31_A            1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFL-ELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY   78 (348)
T ss_dssp             CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHH-HHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred             CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHH-HHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence            58999999999988 99999999999999999999999999999 99999843 22222211100    01122334444


Q ss_pred             eecccc------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH-
Q 023563          127 THDGVK------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF-  167 (280)
Q Consensus       127 ~~~~~~------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~-  167 (280)
                      |.....                        ...+...++.++.+++              |+||+.+|++||||||++. 
T Consensus        79 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~L  158 (348)
T 3d31_A           79 QNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL  158 (348)
T ss_dssp             TTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred             cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence            321110                        0111112222222211              6799999999999999764 


Q ss_pred             -----HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563          168 -----EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       168 -----~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~  231 (280)
                           ..+++.|+++.++.|+|+|++|||++++.+          +||+|++|++ +++..|+++++..+
T Consensus       159 D~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~----------~adri~vl~~G~i~~~g~~~~~~~~  218 (348)
T 3d31_A          159 DPRTQENAREMLSVLHKKNKLTVLHITHDQTEARI----------MADRIAVVMDGKLIQVGKPEEIFEK  218 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHH----------HCSEEEEESSSCEEEEECHHHHHSS
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCHHHHHhC
Confidence                 458899999987679999999999999976          9999999999 99999999988643

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.97  E-value=4.9e-31  Score=237.52  Aligned_cols=168  Identities=18%  Similarity=0.146  Sum_probs=116.8

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCee------------------
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRN------------------  108 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~------------------  108 (280)
                      .++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.   .....                  
T Consensus        18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~   96 (267)
T 2zu0_C           18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLS-ATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG   96 (267)
T ss_dssp             --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred             CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence            3589999999999999999999999999999999999999999999 9999972   11122                  


Q ss_pred             --EEEecCCccccccc--c----eee-------e-----ec---ccccccccccCc-------------hH-HHHHH--h
Q 023563          109 --VAVIKSNKDTRYGL--D----SIV-------T-----HD---GVKLPCCALTTL-------------SS-FRQKF--G  149 (280)
Q Consensus       109 --i~~~~~~~~~~~~~--~----~v~-------~-----~~---~~~~~~~~~~~l-------------~~-~~~~~--a  149 (280)
                        +++++|........  .    ...       .     ..   ......+...++             +. ..++.  |
T Consensus        97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA  176 (267)
T 2zu0_C           97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL  176 (267)
T ss_dssp             HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred             CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence              34444433210000  0    000       0     00   000000111111             11 11111  6


Q ss_pred             hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc-cceEEEeec-eecc
Q 023563          150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL-ADSVTKLTA-RCEF  221 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~-aD~i~~L~~-~i~~  221 (280)
                      +||+.+|++||||||++.+      .++++|++++++ |+|||++|||++++..          + ||++++|++ ++++
T Consensus       177 raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~----------~~~d~v~~l~~G~i~~  245 (267)
T 2zu0_C          177 QMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDY----------IKPDYVHVLYQGRIVK  245 (267)
T ss_dssp             HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCS-SCEEEEECSSGGGGGT----------SCCSEEEEEETTEEEE
T ss_pred             HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeeCHHHHHh----------hcCCEEEEEECCEEEE
Confidence            7899999999999997654      478888887655 9999999999998874          6 899999999 9998


Q ss_pred             ccCcceee
Q 023563          222 CGKRAFFT  229 (280)
Q Consensus       222 ~g~~~~~~  229 (280)
                      .|+++++.
T Consensus       246 ~g~~~~~~  253 (267)
T 2zu0_C          246 SGDFTLVK  253 (267)
T ss_dssp             EECTTHHH
T ss_pred             EcCHHHHh
Confidence            88887653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.97  E-value=8.4e-31  Score=232.67  Aligned_cols=164  Identities=16%  Similarity=0.081  Sum_probs=117.8

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIV  126 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~  126 (280)
                      ||+++|++++|++  +|+|+||+|++ |+++|+||||||||||+ ++|+|+.. ....+.+....    ...+..+++++
T Consensus         1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~   76 (240)
T 2onk_A            1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFL-ELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP   76 (240)
T ss_dssp             CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred             CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence            4789999999986  49999999999 99999999999999999 99999843 22233221110    11122344444


Q ss_pred             eecccccc-------------------------cccccCchHHHHH--------------HhhhhccCCCEEEEeCcccH
Q 023563          127 THDGVKLP-------------------------CCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEAQFF  167 (280)
Q Consensus       127 ~~~~~~~~-------------------------~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP~~~  167 (280)
                      |.......                         .+...++.++.++              .|+||+.+|++||||||++.
T Consensus        77 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~  156 (240)
T 2onk_A           77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSA  156 (240)
T ss_dssp             SSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSS
T ss_pred             CCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence            43211100                         0111122111111              16789999999999999765


Q ss_pred             ------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          168 ------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       168 ------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                            ..++++|++++++.|+|||++|||++++.+          +||++++|++ ++++.|+++++.
T Consensus       157 LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~  215 (240)
T 2onk_A          157 VDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM----------LADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCHHHHH
Confidence                  458889999876559999999999999876          9999999999 999999988876

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.97  E-value=1.6e-30  Score=234.63  Aligned_cols=167  Identities=15%  Similarity=0.119  Sum_probs=118.0

Q ss_pred             ccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------
Q 023563           51 SMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------  107 (280)
Q Consensus        51 ~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------  107 (280)
                      ++|+++||+++|++   +.+|+||||+|++||+++|+||||||||||+ ++|+|+..        +|.            
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   93 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT   93 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence            47999999999976   7899999999999999999999999999999 99999832        221            


Q ss_pred             eEEEecCCccccc-ccceeeee--ccc-----ccccccccCchHHH-----------------------HHH--hhhhcc
Q 023563          108 NVAVIKSNKDTRY-GLDSIVTH--DGV-----KLPCCALTTLSSFR-----------------------QKF--GSDAYD  154 (280)
Q Consensus       108 ~i~~~~~~~~~~~-~~~~v~~~--~~~-----~~~~~~~~~l~~~~-----------------------~~~--a~aL~~  154 (280)
                      .+++++|...... .+...+..  ...     ........++.++.                       ++.  |+||+.
T Consensus        94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~  173 (271)
T 2ixe_A           94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR  173 (271)
T ss_dssp             HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred             cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence            2455555432100 00000000  000     00000001111111                       111  679999


Q ss_pred             CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcce
Q 023563          155 QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAF  227 (280)
Q Consensus       155 ~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~  227 (280)
                      +|++||||||++.+      .++++|+++.++.|+|||++|||++++.           .||+|++|++ ++++.|++++
T Consensus       174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-----------~~d~v~~l~~G~i~~~g~~~~  242 (271)
T 2ixe_A          174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-----------RAHHILFLKEGSVCEQGTHLQ  242 (271)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-----------TCSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEECCHHH
Confidence            99999999997654      4788888886545999999999999875           6999999999 9999999888


Q ss_pred             ee
Q 023563          228 FT  229 (280)
Q Consensus       228 ~~  229 (280)
                      +.
T Consensus       243 l~  244 (271)
T 2ixe_A          243 LM  244 (271)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.97  E-value=2.1e-30  Score=231.23  Aligned_cols=163  Identities=17%  Similarity=0.103  Sum_probs=115.0

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc---hhCCeeEEEecCCc-------ccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE---TQKGRNVAVIKSNK-------DTRYG  121 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl---~~~g~~i~~~~~~~-------~~~~~  121 (280)
                      ||+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+   ......+.+.....       ..+..
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl-k~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~   81 (250)
T 2d2e_A            3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLG-KILAGDPEYTVERGEILLDGENILELSPDERARKG   81 (250)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred             eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence            69999999999999999999999999999999999999999999 999996   22223332211110       00111


Q ss_pred             cceeeeecccc------------------------------cccccccCc-hHHHH-------------H--HhhhhccC
Q 023563          122 LDSIVTHDGVK------------------------------LPCCALTTL-SSFRQ-------------K--FGSDAYDQ  155 (280)
Q Consensus       122 ~~~v~~~~~~~------------------------------~~~~~~~~l-~~~~~-------------~--~a~aL~~~  155 (280)
                      +++++|.....                              ...+...++ .++.+             +  .|+||+.+
T Consensus        82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~  161 (250)
T 2d2e_A           82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE  161 (250)
T ss_dssp             BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred             EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence            22233211100                              000001122 11111             1  16789999


Q ss_pred             CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc-cceEEEeec-eeccccCcc
Q 023563          156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL-ADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~-aD~i~~L~~-~i~~~g~~~  226 (280)
                      |++||||||++.+      .++++|++++++ |+|||++|||++++..          + ||++++|++ ++++.|+++
T Consensus       162 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~----------~~~d~v~~l~~G~i~~~g~~~  229 (250)
T 2d2e_A          162 PTYAVLDETDSGLDIDALKVVARGVNAMRGP-NFGALVITHYQRILNY----------IQPDKVHVMMDGRVVATGGPE  229 (250)
T ss_dssp             CSEEEEECGGGTTCHHHHHHHHHHHHHHCST-TCEEEEECSSSGGGGT----------SCCSEEEEEETTEEEEEESHH
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHH----------hcCCEEEEEECCEEEEEeCHH
Confidence            9999999997754      478888888664 9999999999999875          7 599999999 988888776

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.96  E-value=6e-30  Score=227.99  Aligned_cols=164  Identities=18%  Similarity=0.185  Sum_probs=116.6

Q ss_pred             cEEEcCceEEe--CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563           52 MVSPRPPLFSL--QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV  109 (280)
Q Consensus        52 ~l~~~~ls~~y--~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i  109 (280)
                      -|+++||+++|  +++.+|+|+||+|++||+++|+||||||||||+ ++|+|+..        +|.            .+
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i   85 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLT-KLIQRFYIPENGQVLIDGHDLALADPNWLRRQV   85 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence            38999999999  467899999999999999999999999999999 99999832        221            24


Q ss_pred             EEecCCccccc-ccceeee--ecc----cccccccccCchHHHHH-------------------------HhhhhccCCC
Q 023563          110 AVIKSNKDTRY-GLDSIVT--HDG----VKLPCCALTTLSSFRQK-------------------------FGSDAYDQVD  157 (280)
Q Consensus       110 ~~~~~~~~~~~-~~~~v~~--~~~----~~~~~~~~~~l~~~~~~-------------------------~a~aL~~~p~  157 (280)
                      ++++|...... .+...+.  ...    .....+...++.++.++                         .|+||+.+|+
T Consensus        86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~  165 (247)
T 2ff7_A           86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK  165 (247)
T ss_dssp             EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            55555432100 0000000  000    00001111223332221                         1678999999


Q ss_pred             EEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +||||||++.      ..+++.|+++. + |+|||++|||++++.           .||++++|++ ++++.|+++++.
T Consensus       166 lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~~l~  231 (247)
T 2ff7_A          166 ILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVK-----------NADRIIVMEKGKIVEQGKHKELL  231 (247)
T ss_dssp             EEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGT-----------TSSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence            9999999765      35888888884 4 999999999999874           6999999999 999999988876

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.96  E-value=7.2e-30  Score=226.75  Aligned_cols=164  Identities=17%  Similarity=0.185  Sum_probs=115.9

Q ss_pred             cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------cccccccc
Q 023563           52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~~~~~~  123 (280)
                      ||+++|++++| +++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+....      ...+..++
T Consensus         1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (243)
T 1mv5_A            1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIF-SLLERFYQPTAGEITIDGQPIDNISLENWRSQIG   79 (243)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHH-HHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence            58999999999 677899999999999999999999999999999 99999832 11222211100      01112233


Q ss_pred             eeeeecccc---------cc------------cccccCchHH-----------------------HHH--HhhhhccCCC
Q 023563          124 SIVTHDGVK---------LP------------CCALTTLSSF-----------------------RQK--FGSDAYDQVD  157 (280)
Q Consensus       124 ~v~~~~~~~---------~~------------~~~~~~l~~~-----------------------~~~--~a~aL~~~p~  157 (280)
                      +++|.....         +.            .+...++.++                       .++  .|+||+.+|+
T Consensus        80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~  159 (243)
T 1mv5_A           80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK  159 (243)
T ss_dssp             EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence            333321100         00            0000011111                       111  1678999999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +||||||++.+      .+++.|+++. + |+|||++|||++++.           .||++++|++ +++..|+++++.
T Consensus       160 lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~~~~  225 (243)
T 1mv5_A          160 ILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIV-----------DADKIYFIEKGQITGSGKHNELV  225 (243)
T ss_dssp             EEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHH-----------HCSEEEEEETTEECCCSCHHHHH
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHH-----------hCCEEEEEECCEEEEeCCHHHHH
Confidence            99999997765      4889999886 5 999999999999874           6999999999 999999888775

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.96  E-value=1.2e-29  Score=232.67  Aligned_cols=165  Identities=16%  Similarity=0.140  Sum_probs=118.2

Q ss_pred             ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563           51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV  109 (280)
Q Consensus        51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i  109 (280)
                      ..|+++||+|+|+ ++.+|+||||+|++||+++|+||||||||||+ ++|.|+..        +|.            .+
T Consensus        52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl-~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i  130 (306)
T 3nh6_A           52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTIL-RLLFRFYDISSGCIRIDGQDISQVTQASLRSHI  130 (306)
T ss_dssp             CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHH-HHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred             CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHH-HHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence            3699999999995 57899999999999999999999999999999 99999732        232            35


Q ss_pred             EEecCCccccc-ccceeee--ecc----cccccccccCchHHH-----------------------HH--HhhhhccCCC
Q 023563          110 AVIKSNKDTRY-GLDSIVT--HDG----VKLPCCALTTLSSFR-----------------------QK--FGSDAYDQVD  157 (280)
Q Consensus       110 ~~~~~~~~~~~-~~~~v~~--~~~----~~~~~~~~~~l~~~~-----------------------~~--~a~aL~~~p~  157 (280)
                      ++++|+..... .+...+.  ...    .....+...++.++.                       ++  .||||+.+|+
T Consensus       131 ~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~  210 (306)
T 3nh6_A          131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPG  210 (306)
T ss_dssp             EEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCC
Confidence            55555432100 0000000  000    000001111222221                       11  1789999999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +|||||||+.+      .+++.|+++.+  ++|+|+|||+++.+.           .||+|++|++ ++++.|+++++.
T Consensus       211 iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~-----------~aD~i~vl~~G~iv~~G~~~el~  276 (306)
T 3nh6_A          211 IILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVV-----------NADQILVIKDGCIVERGRHEALL  276 (306)
T ss_dssp             EEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHH-----------TCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence            99999997654      47888888764  789999999999986           5999999999 999999999887

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.96  E-value=1.8e-29  Score=226.43  Aligned_cols=165  Identities=15%  Similarity=0.097  Sum_probs=115.7

Q ss_pred             ccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc------ccccc
Q 023563           51 SMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK------DTRYG  121 (280)
Q Consensus        51 ~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~------~~~~~  121 (280)
                      ++|+++||+++|++   +.+|+|+||+|++|++++|+||||||||||+ ++|+|+......|.+.....      ..+..
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~   94 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA-KLLYRFYDAEGDIKIGGKNVNKYNRNSIRSI   94 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCEEEEEETTEEGGGBCHHHHHTT
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHH-HHHhccCCCCeEEEECCEEhhhcCHHHHhcc
Confidence            47999999999976   4699999999999999999999999999999 99999843222222111100      00112


Q ss_pred             cceeeeecccc--------------------cccccccCchHHH-----------------------HH--HhhhhccCC
Q 023563          122 LDSIVTHDGVK--------------------LPCCALTTLSSFR-----------------------QK--FGSDAYDQV  156 (280)
Q Consensus       122 ~~~v~~~~~~~--------------------~~~~~~~~l~~~~-----------------------~~--~a~aL~~~p  156 (280)
                      +++++|.....                    ...+...++.++.                       ++  .|+||+.+|
T Consensus        95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p  174 (260)
T 2ghi_A           95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP  174 (260)
T ss_dssp             EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence            22333211100                    0001111222221                       11  167899999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++||||||++.+      .+++.|+++. + |+|||++|||++++.           .||++++|++ +++..|+++++.
T Consensus       175 ~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~  241 (260)
T 2ghi_A          175 KIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTIS-----------SAESIILLNKGKIVEKGTHKDLL  241 (260)
T ss_dssp             SEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGST-----------TCSEEEEEETTEEEEEECHHHHH
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence            999999997654      4788888885 3 899999999999874           6999999999 999889888775

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.96  E-value=1e-29  Score=223.89  Aligned_cols=165  Identities=18%  Similarity=0.173  Sum_probs=115.2

Q ss_pred             ccEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-------CeeEEEecCCccccc-
Q 023563           51 SMVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-------GRNVAVIKSNKDTRY-  120 (280)
Q Consensus        51 ~~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-------g~~i~~~~~~~~~~~-  120 (280)
                      .+|+++|++++|+  ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+...       ...++|++|...... 
T Consensus         5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~   83 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLL-MMIMGELEPSEGKIKHSGRISFCSQFSWIMPG   83 (229)
T ss_dssp             EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEECSCEEEECSSCCCCSB
T ss_pred             ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCcCCccEEEECCEEEEEecCCcccCC
Confidence            3799999999994  57899999999999999999999999999999 999998431       125778887653211 


Q ss_pred             ccceeee----ecc-ccccccccc----------------------CchHH-HHH--HhhhhccCCCEEEEeCcccHHH-
Q 023563          121 GLDSIVT----HDG-VKLPCCALT----------------------TLSSF-RQK--FGSDAYDQVDVIGIDEAQFFED-  169 (280)
Q Consensus       121 ~~~~v~~----~~~-~~~~~~~~~----------------------~l~~~-~~~--~a~aL~~~p~lLlLDEP~~~~~-  169 (280)
                      .+...+.    ... .....+...                      .++.= .++  .|+||+.+|++||||||++..| 
T Consensus        84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~  163 (229)
T 2pze_A           84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV  163 (229)
T ss_dssp             CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred             CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence            1100000    000 000000001                      12111 111  2789999999999999987654 


Q ss_pred             -----HHHHH-HHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          170 -----LYDFC-REAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       170 -----i~~~l-~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                           +++.+ +++. + |+|||++|||++++.           .||++++|++ ++++.|+++++.
T Consensus       164 ~~~~~i~~~l~~~~~-~-~~tvi~vtH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~~~~  217 (229)
T 2pze_A          164 LTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-----------KADKILILHEGSSYFYGTFSELQ  217 (229)
T ss_dssp             HHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHH-----------HCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHHHHHHHhh-C-CCEEEEEcCChHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence                 44432 2332 3 899999999999874           6999999999 999999988875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.95  E-value=2e-29  Score=224.99  Aligned_cols=163  Identities=16%  Similarity=0.090  Sum_probs=115.9

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc------ccccccce
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK------DTRYGLDS  124 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~------~~~~~~~~  124 (280)
                      +||+++||+++    .+|+|+||+|++||+++|+||||||||||+ ++|+|+......+.+.....      ..+..+++
T Consensus         3 ~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLl-k~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~   77 (249)
T 2qi9_C            3 IVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLL-ARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAY   77 (249)
T ss_dssp             EEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred             cEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCeEEEECCEECCcCCHHHHhceEEE
Confidence            37999999987    689999999999999999999999999999 99999843113332211110      00111233


Q ss_pred             eeeecccc----------------------cccccccCchHHHHHH--------------hhhhccCCC-------EEEE
Q 023563          125 IVTHDGVK----------------------LPCCALTTLSSFRQKF--------------GSDAYDQVD-------VIGI  161 (280)
Q Consensus       125 v~~~~~~~----------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~-------lLlL  161 (280)
                      ++|.....                      ...+...++.++.++.              |+||+.+|+       +|||
T Consensus        78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL  157 (249)
T 2qi9_C           78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL  157 (249)
T ss_dssp             ECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred             ECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence            33321110                      0011112222221111              678999999       9999


Q ss_pred             eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||++.+      .++++|++++++ |+|||++|||++++.+          +||++++|++ ++++.|+++++.
T Consensus       158 DEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~  221 (249)
T 2qi9_C          158 DEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLR----------HAHRAWLLKGGKMLASGRREEVL  221 (249)
T ss_dssp             SSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHH----------HCSEEEEEETTEEEEEEEHHHHS
T ss_pred             ECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHh
Confidence            9997654      588899999776 9999999999999976          9999999999 999889888876

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.95  E-value=5.6e-29  Score=235.15  Aligned_cols=167  Identities=12%  Similarity=0.041  Sum_probs=118.2

Q ss_pred             ccEEEcCceEEe--CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcc------ccccc
Q 023563           51 SMVSPRPPLFSL--QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKD------TRYGL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y--~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~------~~~~~  122 (280)
                      ..|+++||+|+|  +++.+|+||||+|++||+++|+||||||||||+ ++|+|+......|.+-.....      .+..+
T Consensus        18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~i   96 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLL-SAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF   96 (390)
T ss_dssp             CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHHTCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred             CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHH-HHHhCCCCCCeEEEECCEECCcCChHHHhCCE
Confidence            369999999999  668899999999999999999999999999999 999998432223322211110      11223


Q ss_pred             ceeeeecccc-------------------cccccccCchHHHH-----------------------H--HhhhhccCCCE
Q 023563          123 DSIVTHDGVK-------------------LPCCALTTLSSFRQ-----------------------K--FGSDAYDQVDV  158 (280)
Q Consensus       123 ~~v~~~~~~~-------------------~~~~~~~~l~~~~~-----------------------~--~a~aL~~~p~l  158 (280)
                      ++++|....+                   ...+...++.++.+                       +  .|+||+.+|++
T Consensus        97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l  176 (390)
T 3gd7_A           97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI  176 (390)
T ss_dssp             EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence            3343321110                   01111223332222                       1  16899999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~  231 (280)
                      ||||||++.+      .+++.|+++.  .++|+|++|||++.+.           .||+|++|++ +++..|+++++..+
T Consensus       177 LLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~~-----------~aDri~vl~~G~i~~~g~~~el~~~  243 (390)
T 3gd7_A          177 LLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAML-----------ECDQFLVIEENKVRQYDSILELYHY  243 (390)
T ss_dssp             EEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGGT-----------TCSEEEEEETTEEEEESSHHHHHHC
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHHH-----------hCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999997654      4666666653  3899999999987553           7999999999 99999999988744

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.95  E-value=4e-29  Score=221.28  Aligned_cols=161  Identities=19%  Similarity=0.240  Sum_probs=115.3

Q ss_pred             cEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccc
Q 023563           52 MVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYG  121 (280)
Q Consensus        52 ~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~  121 (280)
                      +|+++||+++|+  ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+..        +| .+++++|.... ..
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g-~i~~v~Q~~~~-~~   79 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLL-SALLAEMDKVEGHVAIKG-SVAYVPQQAWI-QN   79 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTCSEEEEEEEEECS-CEEEECSSCCC-CS
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECC-EEEEEcCCCcC-CC
Confidence            699999999997  57899999999999999999999999999999 99999832        23 47888886532 11


Q ss_pred             cceeee--------ecccccccccc----------------------cCchH-HHHH--HhhhhccCCCEEEEeCcccHH
Q 023563          122 LDSIVT--------HDGVKLPCCAL----------------------TTLSS-FRQK--FGSDAYDQVDVIGIDEAQFFE  168 (280)
Q Consensus       122 ~~~v~~--------~~~~~~~~~~~----------------------~~l~~-~~~~--~a~aL~~~p~lLlLDEP~~~~  168 (280)
                      . .+.+        ...........                      ..++. ..++  .|+||+.+|++||||||++.+
T Consensus        80 ~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L  158 (237)
T 2cbz_A           80 D-SLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV  158 (237)
T ss_dssp             E-EHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTS
T ss_pred             c-CHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence            0 0000        00000000000                      11111 1122  278999999999999998765


Q ss_pred             H------HHHHHH---HHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          169 D------LYDFCR---EAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       169 ~------i~~~l~---~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |      +++.|.   ++ .+ |+|||++|||++++.           .||++++|++ +++..|+++++.
T Consensus       159 D~~~~~~i~~~l~~~~~~-~~-~~tviivtH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~~~~  216 (237)
T 2cbz_A          159 DAHVGKHIFENVIGPKGM-LK-NKTRILVTHSMSYLP-----------QVDVIIVMSGGKISEMGSYQELL  216 (237)
T ss_dssp             CHHHHHHHHHHTTSTTST-TT-TSEEEEECSCSTTGG-----------GSSEEEEEETTEEEEEECHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhh-cC-CCEEEEEecChHHHH-----------hCCEEEEEeCCEEEEeCCHHHHh
Confidence            4      455553   22 23 899999999999874           7999999999 999999988876

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.95  E-value=2.3e-28  Score=213.53  Aligned_cols=156  Identities=12%  Similarity=0.139  Sum_probs=110.1

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-------eEEEecCC
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-------NVAVIKSN  115 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-------~i~~~~~~  115 (280)
                      .+|+++|++++|++ .+|+|+||+|++||+++|+||||||||||+ ++|+|+..        +|.       .+++++|.
T Consensus         9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~   86 (214)
T 1sgw_A            9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLL-KTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE   86 (214)
T ss_dssp             CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred             ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence            37999999999998 999999999999999999999999999999 99999732        332       35666665


Q ss_pred             ccccc--ccceeee--------ecc--cccccccccCchHH-----------HHHH--hhhhccCCCEEEEeCcccH---
Q 023563          116 KDTRY--GLDSIVT--------HDG--VKLPCCALTTLSSF-----------RQKF--GSDAYDQVDVIGIDEAQFF---  167 (280)
Q Consensus       116 ~~~~~--~~~~v~~--------~~~--~~~~~~~~~~l~~~-----------~~~~--a~aL~~~p~lLlLDEP~~~---  167 (280)
                      .....  .+...+.        ...  .....+...++..+           .++.  |+||+.+|++||||||++.   
T Consensus        87 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~  166 (214)
T 1sgw_A           87 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE  166 (214)
T ss_dssp             CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred             CcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCH
Confidence            43211  1000000        000  00011111222221           1111  6789999999999999654   


Q ss_pred             ---HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeecee
Q 023563          168 ---EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARC  219 (280)
Q Consensus       168 ---~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i  219 (280)
                         ..+++.|++++++ |+|||++|||++++..          +||+++++..++
T Consensus       167 ~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~----------~~d~v~~~~~~~  210 (214)
T 1sgw_A          167 DSKHKVLKSILEILKE-KGIVIISSREELSYCD----------VNENLHKYSTKI  210 (214)
T ss_dssp             TTHHHHHHHHHHHHHH-HSEEEEEESSCCTTSS----------EEEEGGGGBC--
T ss_pred             HHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEeCCcc
Confidence               4688999998876 9999999999999876          899998776543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.95  E-value=2.1e-28  Score=219.98  Aligned_cols=162  Identities=18%  Similarity=0.138  Sum_probs=113.4

Q ss_pred             cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc---ccccccc-
Q 023563           52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK---DTRYGLD-  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~---~~~~~~~-  123 (280)
                      ||+++|++++|++    +.+|+|+||+|+ |++++|+||||||||||+ ++|+|+......+.+.....   ..+..++ 
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLl-k~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~   78 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLL-RAISGLLPYSGNIFINGMEVRKIRNYIRYST   78 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHH-HHHTTSSCCEEEEEETTEEGGGCSCCTTEEE
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHH-HHHhCCCCCCcEEEECCEECcchHHhhheEE
Confidence            5899999999987    789999999999 999999999999999999 99999852222222211000   0012233 


Q ss_pred             eeeeeccc---------------------ccccccccCch-HHHHHH--------------hhhhccCCCEEEEeCcccH
Q 023563          124 SIVTHDGV---------------------KLPCCALTTLS-SFRQKF--------------GSDAYDQVDVIGIDEAQFF  167 (280)
Q Consensus       124 ~v~~~~~~---------------------~~~~~~~~~l~-~~~~~~--------------a~aL~~~p~lLlLDEP~~~  167 (280)
                      +++|....                     ....+...++. ++.++.              |+||+.+|++||||||++.
T Consensus        79 ~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~  158 (263)
T 2pjz_A           79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN  158 (263)
T ss_dssp             CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred             EeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence            33322110                     00111122332 222221              6789999999999999776


Q ss_pred             HH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccc-eEEEeec-eeccccCcceee
Q 023563          168 ED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLAD-SVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       168 ~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD-~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +|      +++.|++++   . |||++|||++++.+          +|| ++++|++ ++++.|+++++.
T Consensus       159 LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~~~----------~~d~~i~~l~~G~i~~~g~~~~l~  214 (263)
T 2pjz_A          159 VDAARRHVISRYIKEYG---K-EGILVTHELDMLNL----------YKEYKAYFLVGNRLQGPISVSELL  214 (263)
T ss_dssp             CCHHHHHHHHHHHHHSC---S-EEEEEESCGGGGGG----------CTTSEEEEEETTEEEEEEEHHHHH
T ss_pred             cCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHHHH----------hcCceEEEEECCEEEEecCHHHHH
Confidence            53      555555543   2 99999999999876          999 9999999 999999998876

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.94  E-value=4.1e-27  Score=232.82  Aligned_cols=165  Identities=18%  Similarity=0.155  Sum_probs=117.9

Q ss_pred             ccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------e
Q 023563           51 SMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------N  108 (280)
Q Consensus        51 ~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~  108 (280)
                      .+|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+ ++|.|+..        +|.            .
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll-~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~  418 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIA-NLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH  418 (582)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence            36999999999974  6799999999999999999999999999999 99999732        232            2


Q ss_pred             EEEecCCccccc-ccceee--ee-cc----cccccccccCchHHHHH-------------------------HhhhhccC
Q 023563          109 VAVIKSNKDTRY-GLDSIV--TH-DG----VKLPCCALTTLSSFRQK-------------------------FGSDAYDQ  155 (280)
Q Consensus       109 i~~~~~~~~~~~-~~~~v~--~~-~~----~~~~~~~~~~l~~~~~~-------------------------~a~aL~~~  155 (280)
                      +++++|+..... .+...+  .. ..    .....+...++.++.++                         .|||++.+
T Consensus       419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~  498 (582)
T 3b5x_A          419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD  498 (582)
T ss_pred             eEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcC
Confidence            445544432100 000000  00 00    00011111223222221                         16899999


Q ss_pred             CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      |++||||||++..      .+.+.|+++. + |+|+|++||+++.+.           .||+|++|++ ++++.|+++++
T Consensus       499 p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l  565 (582)
T 3b5x_A          499 APVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIE-----------QADEILVVDEGEIIERGRHADL  565 (582)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-----------hCCEEEEEECCEEEEECCHHHH
Confidence            9999999997765      4777888775 3 899999999999885           7999999999 99999999988


Q ss_pred             e
Q 023563          229 T  229 (280)
Q Consensus       229 ~  229 (280)
                      .
T Consensus       566 ~  566 (582)
T 3b5x_A          566 L  566 (582)
T ss_pred             H
Confidence            6

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.94  E-value=3.6e-27  Score=233.22  Aligned_cols=165  Identities=15%  Similarity=0.130  Sum_probs=118.9

Q ss_pred             ccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------e
Q 023563           51 SMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------N  108 (280)
Q Consensus        51 ~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~  108 (280)
                      .+|+++||+++|++  +.+|+|+||+|++||+++|+||||||||||+ ++|.|+..        +|.            .
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl-~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~  418 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIA-SLITRFYDIDEGHILMDGHDLREYTLASLRNQ  418 (582)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHH-HHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred             CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence            36999999999973  6899999999999999999999999999999 99999732        222            3


Q ss_pred             EEEecCCccccc-ccceeee--e-cc----cccccccccCchHHHHH-------------------------HhhhhccC
Q 023563          109 VAVIKSNKDTRY-GLDSIVT--H-DG----VKLPCCALTTLSSFRQK-------------------------FGSDAYDQ  155 (280)
Q Consensus       109 i~~~~~~~~~~~-~~~~v~~--~-~~----~~~~~~~~~~l~~~~~~-------------------------~a~aL~~~  155 (280)
                      +++++|+..... .+...+.  . ..    .....+...++.++.++                         .|||++.+
T Consensus       419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~  498 (582)
T 3b60_A          419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD  498 (582)
T ss_dssp             EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred             CeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence            555555432110 0000000  0 00    00011112233333222                         16899999


Q ss_pred             CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      |++||||||++..      .+.+.++++.+  |+|+|++||+++.+.           .||+|++|++ ++++.|+++++
T Consensus       499 p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l  565 (582)
T 3b60_A          499 SPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-----------QADEIVVVEDGIIVERGTHSEL  565 (582)
T ss_dssp             CSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGTT-----------TCSEEEEEETTEEEEEECHHHH
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHHHHH-----------hCCEEEEEECCEEEEecCHHHH
Confidence            9999999997654      47888888753  899999999999875           7999999999 99999999887


Q ss_pred             e
Q 023563          229 T  229 (280)
Q Consensus       229 ~  229 (280)
                      .
T Consensus       566 ~  566 (582)
T 3b60_A          566 L  566 (582)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=8.3e-27  Score=230.94  Aligned_cols=165  Identities=14%  Similarity=0.151  Sum_probs=117.4

Q ss_pred             ccEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------ee
Q 023563           51 SMVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RN  108 (280)
Q Consensus        51 ~~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~  108 (280)
                      ..|+++|++++|+  ++.+|+|+||+|++||+++|+||||||||||+ ++|.|+..        +|            +.
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll-~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~  418 (587)
T 3qf4_A          340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM-NLIPRLIDPERGRVEVDELDVRTVKLKDLRGH  418 (587)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHH-HTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred             CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence            3699999999994  46799999999999999999999999999999 99999732        22            23


Q ss_pred             EEEecCCccccc-ccceeee--ecc----cccccccccCchHH-----------------------HHHH--hhhhccCC
Q 023563          109 VAVIKSNKDTRY-GLDSIVT--HDG----VKLPCCALTTLSSF-----------------------RQKF--GSDAYDQV  156 (280)
Q Consensus       109 i~~~~~~~~~~~-~~~~v~~--~~~----~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p  156 (280)
                      +++++|+...-. .+...+.  ...    .........++.++                       +++.  |||++.+|
T Consensus       419 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p  498 (587)
T 3qf4_A          419 ISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP  498 (587)
T ss_dssp             EEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCC
T ss_pred             eEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCC
Confidence            555555432110 0000000  000    00000111111111                       1121  78999999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++|||||||+..      .+.+.++++. + |+|+|++||+++.+.           .||+|++|++ ++++.|+++++.
T Consensus       499 ~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~-----------~~d~i~vl~~G~i~~~g~~~el~  565 (587)
T 3qf4_A          499 KVLILDDCTSSVDPITEKRILDGLKRYT-K-GCTTFIITQKIPTAL-----------LADKILVLHEGKVAGFGTHKELL  565 (587)
T ss_dssp             SEEEEESCCTTSCHHHHHHHHHHHHHHS-T-TCEEEEEESCHHHHT-----------TSSEEEEEETTEEEEEECHHHHH
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHhC-C-CCEEEEEecChHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence            999999997754      4777777764 3 899999999999885           7999999999 999999999987

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.93  E-value=1.9e-27  Score=216.67  Aligned_cols=163  Identities=17%  Similarity=0.170  Sum_probs=103.9

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-------CCeeEEEecCCccccc-cc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-------KGRNVAVIKSNKDTRY-GL  122 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-------~g~~i~~~~~~~~~~~-~~  122 (280)
                      ++|+++||++.+  +.+|+|+||+|++|++++|+||||||||||+ ++|+|+..       ....++|++|...... .+
T Consensus        39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv  115 (290)
T 2bbs_A           39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLL-MMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTI  115 (290)
T ss_dssp             -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBH
T ss_pred             ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEEEEEeCCCccCcccH
Confidence            479999999863  5799999999999999999999999999999 99999832       1225788888653211 11


Q ss_pred             ceeee---ecc-cccccccccCchHH-----------------------HHH--HhhhhccCCCEEEEeCcccHHH----
Q 023563          123 DSIVT---HDG-VKLPCCALTTLSSF-----------------------RQK--FGSDAYDQVDVIGIDEAQFFED----  169 (280)
Q Consensus       123 ~~v~~---~~~-~~~~~~~~~~l~~~-----------------------~~~--~a~aL~~~p~lLlLDEP~~~~~----  169 (280)
                      ...+.   ... .....+...++.+.                       .++  .|+||+.+|++||||||++.+|    
T Consensus       116 ~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~  195 (290)
T 2bbs_A          116 KENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE  195 (290)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred             HHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHH
Confidence            11000   000 00000001111111                       111  1789999999999999987654    


Q ss_pred             --HHHHH-HHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          170 --LYDFC-REAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       170 --i~~~l-~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                        +++.+ +++ .+ |+|||++|||++++.           .||++++|++ ++++.|+++++.
T Consensus       196 ~~i~~~ll~~~-~~-~~tviivtHd~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~  246 (290)
T 2bbs_A          196 KEIFESCVCKL-MA-NKTRILVTSKMEHLK-----------KADKILILHEGSSYFYGTFSELQ  246 (290)
T ss_dssp             HHHHHHCCCCC-TT-TSEEEEECCCHHHHH-----------HSSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHHHHh-hC-CCEEEEEecCHHHHH-----------cCCEEEEEECCeEEEeCCHHHHh
Confidence              44432 233 23 899999999999874           6999999999 999999988875

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.93  E-value=6.8e-27  Score=231.09  Aligned_cols=164  Identities=12%  Similarity=0.140  Sum_probs=117.1

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i  109 (280)
                      .|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+ ++|.|+..        +|.            .+
T Consensus       339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll-~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i  417 (578)
T 4a82_A          339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLI-NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI  417 (578)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHH-TTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHH-HHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            5999999999964  5799999999999999999999999999999 99999732        332            35


Q ss_pred             EEecCCccccc-ccceeee--ecc----cccccccccCchHH-----------------------HHHH--hhhhccCCC
Q 023563          110 AVIKSNKDTRY-GLDSIVT--HDG----VKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVD  157 (280)
Q Consensus       110 ~~~~~~~~~~~-~~~~v~~--~~~----~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~  157 (280)
                      ++++|+...-. .+...+.  ...    .........++.++                       ++|.  |||++.+|+
T Consensus       418 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~  497 (578)
T 4a82_A          418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP  497 (578)
T ss_dssp             EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred             EEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence            66666542210 0000000  000    00001111111111                       1111  789999999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +||||||++..      .+.+.++++.+  ++|+|++||+++.+.           .||+|++|++ ++++.|+++++.
T Consensus       498 illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-----------~~d~i~~l~~G~i~~~g~~~el~  563 (578)
T 4a82_A          498 ILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTIT-----------HADKIVVIENGHIVETGTHRELI  563 (578)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGTT-----------TCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence            99999997764      46777777743  799999999999875           6999999999 999999999887

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.93  E-value=1.6e-26  Score=226.77  Aligned_cols=168  Identities=14%  Similarity=0.086  Sum_probs=123.8

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-------CCeeEEEecCCccccc--
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-------KGRNVAVIKSNKDTRY--  120 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-------~g~~i~~~~~~~~~~~--  120 (280)
                      .++++++|+++.|++. .|+++||+|++||++||+||||||||||+ ++|.|+..       ....+++++|+.....  
T Consensus       285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLl-k~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~  362 (538)
T 1yqt_A          285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFV-KMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEG  362 (538)
T ss_dssp             CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHH-HHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSS
T ss_pred             CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECceEEEEecCCcCCCCC
Confidence            4689999999999875 69999999999999999999999999999 99999743       1346888888754321  


Q ss_pred             ccceeeeec--------ccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HHHH
Q 023563          121 GLDSIVTHD--------GVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLYD  172 (280)
Q Consensus       121 ~~~~v~~~~--------~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~  172 (280)
                      .+..++...        ......+...++....++.              |++|+.+|++|||||||+.+      .+++
T Consensus       363 tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~  442 (538)
T 1yqt_A          363 TVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR  442 (538)
T ss_dssp             BHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred             cHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence            111111000        0001112222332222211              67899999999999997654      4788


Q ss_pred             HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec---eeccccCcceee
Q 023563          173 FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA---RCEFCGKRAFFT  229 (280)
Q Consensus       173 ~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~---~i~~~g~~~~~~  229 (280)
                      +|++++++.|.|||+||||++++.+          +||+|++|++   +++..|+|+++.
T Consensus       443 ~l~~l~~~~g~tvi~vsHd~~~~~~----------~~drv~vl~~~~~~~~~~g~~~~~~  492 (538)
T 1yqt_A          443 AIRHLMEKNEKTALVVEHDVLMIDY----------VSDRLMVFEGEPGKYGRALPPMGMR  492 (538)
T ss_dssp             HHHHHHHHHTCEEEEECSCHHHHHH----------HCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHH----------hCCEEEEEeCCcceEeecCCHHHHH
Confidence            8998875559999999999999986          9999999986   455688998876

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.93  E-value=8.7e-27  Score=231.21  Aligned_cols=164  Identities=17%  Similarity=0.163  Sum_probs=118.8

Q ss_pred             cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEE
Q 023563           52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVA  110 (280)
Q Consensus        52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~  110 (280)
                      -|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|.|+..        +|.            .++
T Consensus       354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll-~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~  432 (598)
T 3qf4_B          354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIV-NLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG  432 (598)
T ss_dssp             CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHH-HHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred             eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence            5999999999964 6799999999999999999999999999999 99999732        332            356


Q ss_pred             EecCCccccc-ccceee--ee----cccccccccccCchHHH-----------------------HHH--hhhhccCCCE
Q 023563          111 VIKSNKDTRY-GLDSIV--TH----DGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQVDV  158 (280)
Q Consensus       111 ~~~~~~~~~~-~~~~v~--~~----~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p~l  158 (280)
                      +++|+...-. .+...+  ..    +......+...++.++.                       ++.  |||++.+|++
T Consensus       433 ~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i  512 (598)
T 3qf4_B          433 IVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI  512 (598)
T ss_dssp             EECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred             EEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            6666543210 000000  00    00000111111222211                       111  7899999999


Q ss_pred             EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||||+..      .+.+.++++. + |+|+|++||+++.+.           .||+|++|++ ++++.|+++++.
T Consensus       513 lllDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~  577 (598)
T 3qf4_B          513 LILDEATSNVDTKTEKSIQAAMWKLM-E-GKTSIIIAHRLNTIK-----------NADLIIVLRDGEIVEMGKHDELI  577 (598)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHHHHHH-T-TSEEEEESCCTTHHH-----------HCSEEEEECSSSEEECSCHHHHH
T ss_pred             EEEECCccCCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence            9999997754      4778888875 3 999999999999886           6999999999 999999999987

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.93  E-value=2.8e-26  Score=224.96  Aligned_cols=156  Identities=13%  Similarity=0.091  Sum_probs=115.3

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCcccccc
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTRYG  121 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~~~  121 (280)
                      .++++++|+++.|++. .|+++||+|++||++||+||||||||||+ ++|+|+.        ..+..+++++|.......
T Consensus       267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~  344 (538)
T 3ozx_A          267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFA-RILVGEITADEGSVTPEKQILSYKPQRIFPNYD  344 (538)
T ss_dssp             CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCSBCCEESSCCCEEEECSSCCCCCS
T ss_pred             cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCeeeEeechhcccccC
Confidence            4689999999999884 57888999999999999999999999999 9999973        356678888776432111


Q ss_pred             --cceeeee--ccc-------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HH
Q 023563          122 --LDSIVTH--DGV-------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DL  170 (280)
Q Consensus       122 --~~~v~~~--~~~-------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i  170 (280)
                        +...+..  ...       ....+...++..+.++.              |++|+.+|++|||||||+.+      ++
T Consensus       345 ~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i  424 (538)
T 3ozx_A          345 GTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV  424 (538)
T ss_dssp             SBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred             CCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence              1100000  000       01112222332222211              78999999999999997654      57


Q ss_pred             HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          171 YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       171 ~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +++|++++++.|+|||+||||++++.+          +||||++|++
T Consensus       425 ~~~l~~l~~~~g~tvi~vsHdl~~~~~----------~aDri~vl~~  461 (538)
T 3ozx_A          425 AKAIKRVTRERKAVTFIIDHDLSIHDY----------IADRIIVFKG  461 (538)
T ss_dssp             HHHHHHHHHHTTCEEEEECSCHHHHHH----------HCSEEEEEEE
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence            889999987679999999999999987          9999999987

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.93  E-value=3.4e-26  Score=227.17  Aligned_cols=168  Identities=15%  Similarity=0.097  Sum_probs=122.8

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-------CCeeEEEecCCcccccc-
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-------KGRNVAVIKSNKDTRYG-  121 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-------~g~~i~~~~~~~~~~~~-  121 (280)
                      .++++++|++++|++. .|+++||+|++||++||+||||||||||+ ++|+|+..       ....++|++|+...... 
T Consensus       355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLl-k~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~  432 (607)
T 3bk7_A          355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFV-KMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG  432 (607)
T ss_dssp             CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHH-HHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSS
T ss_pred             ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEEeeEEEEEecCccCCCCC
Confidence            4689999999999875 68999999999999999999999999999 99999732       13468888887543211 


Q ss_pred             -cceeeeec--------ccccccccccCchHHHHH--------------HhhhhccCCCEEEEeCcccHH------HHHH
Q 023563          122 -LDSIVTHD--------GVKLPCCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEAQFFE------DLYD  172 (280)
Q Consensus       122 -~~~v~~~~--------~~~~~~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP~~~~------~i~~  172 (280)
                       +..++...        ......+...++.++.++              .|++|+.+|++|||||||+.+      .+++
T Consensus       433 tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~  512 (607)
T 3bk7_A          433 TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR  512 (607)
T ss_dssp             BHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred             cHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHH
Confidence             11111000        000011111122221111              167899999999999997654      5788


Q ss_pred             HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec---eeccccCcceee
Q 023563          173 FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA---RCEFCGKRAFFT  229 (280)
Q Consensus       173 ~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~---~i~~~g~~~~~~  229 (280)
                      +|++++++.|.|||+||||++++.+          +||+|++|++   ++...|+|+++.
T Consensus       513 ~l~~l~~~~g~tvi~vsHd~~~~~~----------~adrv~vl~~~~g~~~~~g~p~~~~  562 (607)
T 3bk7_A          513 AIRHLMEKNEKTALVVEHDVLMIDY----------VSDRLIVFEGEPGRHGRALPPMGMR  562 (607)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHHHH----------HCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHH----------hCCEEEEEcCCcceEEecCCHHHHH
Confidence            9999876569999999999999986          9999999985   345678998876

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.8e-25  Score=220.56  Aligned_cols=164  Identities=17%  Similarity=0.175  Sum_probs=117.6

Q ss_pred             EcCceEEeCC-eeeeEeeeeEeeCc-----eEEEEEcCCCCcHHHHHHHHHhcchh--CC-----eeEEEecCCcccccc
Q 023563           55 PRPPLFSLQN-RNLHSEASVSSPSG-----EIHVIVGPMFAGKTTTLLRRIQAETQ--KG-----RNVAVIKSNKDTRYG  121 (280)
Q Consensus        55 ~~~ls~~y~~-~~vl~~isl~i~~G-----ei~~liGpNGsGKSTLl~~~l~gl~~--~g-----~~i~~~~~~~~~~~~  121 (280)
                      .++++++|++ ..+++++||++.+|     |++||+||||||||||+ ++|+|+..  .|     ..+++++|.....+.
T Consensus       349 ~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLl-k~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~  427 (608)
T 3j16_B          349 SASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLI-KLLAGALKPDEGQDIPKLNVSMKPQKIAPKFP  427 (608)
T ss_dssp             SSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHH-HHHHTSSCCSBCCCCCSCCEEEECSSCCCCCC
T ss_pred             ccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHH-HHHhcCCCCCCCcCccCCcEEEecccccccCC
Confidence            3778899976 46899999999999     78999999999999999 99999843  22     357777776432211


Q ss_pred             --cceeee---eccc-----ccccccccCchHH------------HHH--HhhhhccCCCEEEEeCcccHH------HHH
Q 023563          122 --LDSIVT---HDGV-----KLPCCALTTLSSF------------RQK--FGSDAYDQVDVIGIDEAQFFE------DLY  171 (280)
Q Consensus       122 --~~~v~~---~~~~-----~~~~~~~~~l~~~------------~~~--~a~aL~~~p~lLlLDEP~~~~------~i~  171 (280)
                        +...+.   ....     ....+...++.++            .++  .|++|+.+|++|||||||+.+      .++
T Consensus       428 ~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~  507 (608)
T 3j16_B          428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICS  507 (608)
T ss_dssp             SBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHH
T ss_pred             ccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHH
Confidence              100000   0000     0001111111111            111  178999999999999997754      478


Q ss_pred             HHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec---eeccccCcceee
Q 023563          172 DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA---RCEFCGKRAFFT  229 (280)
Q Consensus       172 ~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~---~i~~~g~~~~~~  229 (280)
                      ++|++++++.|+|||+||||++++.+          +||||++|++   ++++.|+|+++.
T Consensus       508 ~ll~~l~~~~g~tviivtHdl~~~~~----------~aDrvivl~~~~g~~~~~g~p~~~~  558 (608)
T 3j16_B          508 KVIRRFILHNKKTAFIVEHDFIMATY----------LADKVIVFEGIPSKNAHARAPESLL  558 (608)
T ss_dssp             HHHHHHHHHHTCEEEEECSCHHHHHH----------HCSEEEECEEETTTEEECCCCEEHH
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHHHHH----------hCCEEEEEeCCCCeEEecCChHHHh
Confidence            88999876559999999999999986          9999999985   678899999987

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.91  E-value=9.2e-25  Score=216.92  Aligned_cols=153  Identities=16%  Similarity=0.098  Sum_probs=105.3

Q ss_pred             cEEE--------cCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEE--------Ee
Q 023563           52 MVSP--------RPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVA--------VI  112 (280)
Q Consensus        52 ~l~~--------~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~--------~~  112 (280)
                      +|++        +||+++|+++ .+|+++| +|++||++||+||||||||||+ ++|+|+..  .|. +.        .+
T Consensus        83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLl-kiL~Gll~p~~G~-~~~~~~~~~~~~  159 (607)
T 3bk7_A           83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAV-KILAGQLIPNLCE-DNDSWDNVIRAF  159 (607)
T ss_dssp             CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHH-HHHTTSSCCCTTT-TCCCHHHHHHHT
T ss_pred             eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHH-HHHhCCCCCCCCc-cccccchhhhee
Confidence            5788        9999999876 4999999 9999999999999999999999 99999742  222 10        00


Q ss_pred             cCCc---------ccccccceeeeecc---------------------cccccccccCchHHHHHH--------------
Q 023563          113 KSNK---------DTRYGLDSIVTHDG---------------------VKLPCCALTTLSSFRQKF--------------  148 (280)
Q Consensus       113 ~~~~---------~~~~~~~~v~~~~~---------------------~~~~~~~~~~l~~~~~~~--------------  148 (280)
                      ....         ..+..+..+++...                     .....+...++.++.++.              
T Consensus       160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaI  239 (607)
T 3bk7_A          160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAI  239 (607)
T ss_dssp             TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHH
T ss_pred             CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHH
Confidence            0000         00011111111100                     000111112222222211              


Q ss_pred             hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeece
Q 023563          149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTAR  218 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~  218 (280)
                      |+||+.+|++|||||||+.+      .++++|++++++ |.|||+||||++++.+          +||+|++|+++
T Consensus       240 AraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvIivsHdl~~~~~----------~adri~vl~~~  304 (607)
T 3bk7_A          240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLAVLDY----------LSDVIHVVYGE  304 (607)
T ss_dssp             HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHH----------HCSEEEEEESC
T ss_pred             HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHHh----------hCCEEEEECCC
Confidence            67899999999999997754      478899999875 9999999999999986          99999999874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.91  E-value=2.2e-24  Score=222.62  Aligned_cols=163  Identities=15%  Similarity=0.148  Sum_probs=112.5

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC------eeEEEecCCccc---cccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG------RNVAVIKSNKDT---RYGL  122 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g------~~i~~~~~~~~~---~~~~  122 (280)
                      -|...|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|-.+.|      ..+.+++|....   ...+
T Consensus       435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLL-k~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv  513 (986)
T 2iw3_A          435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLM-RAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSV  513 (986)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBH
T ss_pred             eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCccccceeEEEEcccccccccCCcH
Confidence            46677999999999999999999999999999999999999999 9887422222      134555543211   1111


Q ss_pred             ceeeee-----cccccccccccCc-hHHHHHH--------------hhhhccCCCEEEEeCcccHHH------HHHHHHH
Q 023563          123 DSIVTH-----DGVKLPCCALTTL-SSFRQKF--------------GSDAYDQVDVIGIDEAQFFED------LYDFCRE  176 (280)
Q Consensus       123 ~~v~~~-----~~~~~~~~~~~~l-~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~~------i~~~l~~  176 (280)
                      ...+..     .......+...++ ..+.++.              |++|+.+|++||||||++.+|      ++++|++
T Consensus       514 ~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~  593 (986)
T 2iw3_A          514 LDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT  593 (986)
T ss_dssp             HHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh
Confidence            010000     0001112223344 2232222              678999999999999987654      4555544


Q ss_pred             HHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec-cccCcceee
Q 023563          177 AADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE-FCGKRAFFT  229 (280)
Q Consensus       177 l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~-~~g~~~~~~  229 (280)
                          .|.|||++|||++++.+          +||+|++|++ +++ +.|+++++.
T Consensus       594 ----~g~tvIivSHdl~~l~~----------~adrii~L~~G~iv~~~G~~~e~~  634 (986)
T 2iw3_A          594 ----CGITSITISHDSVFLDN----------VCEYIINYEGLKLRKYKGNFTEFV  634 (986)
T ss_dssp             ----SCSEEEEECSCHHHHHH----------HCSEEEEEETTEEEEEESCHHHHH
T ss_pred             ----CCCEEEEEECCHHHHHH----------hCCEEEEEECCeeecCCCCHHHHH
Confidence                49999999999999986          9999999999 875 578776654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.90  E-value=4.6e-25  Score=235.59  Aligned_cols=165  Identities=17%  Similarity=0.178  Sum_probs=117.7

Q ss_pred             cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------e
Q 023563           52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------N  108 (280)
Q Consensus        52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~  108 (280)
                      -|+++||+++|++   .+||+||||+|++||.+||+||||||||||+ ++|.|+..        +|.            .
T Consensus      1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~-~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVV-ALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp             CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHH-HHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred             eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHH-HHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence            5999999999954   4699999999999999999999999999999 99999732        332            3


Q ss_pred             EEEecCCccc-----ccccceeeeecc----cccccccccCchHHH-----------------------HHH--hhhhcc
Q 023563          109 VAVIKSNKDT-----RYGLDSIVTHDG----VKLPCCALTTLSSFR-----------------------QKF--GSDAYD  154 (280)
Q Consensus       109 i~~~~~~~~~-----~~~~~~v~~~~~----~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~  154 (280)
                      +++++|++..     +.++.+-.....    ....++...++.++.                       ++.  ||||+.
T Consensus      1155 i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr 1234 (1321)
T 4f4c_A         1155 IAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR 1234 (1321)
T ss_dssp             EEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS
T ss_pred             eEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh
Confidence            5566665432     111100000000    000111111222221                       111  789999


Q ss_pred             CCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcce
Q 023563          155 QVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAF  227 (280)
Q Consensus       155 ~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~  227 (280)
                      +|++|||||||+..|      +.+.|+++.+  |+|+|+|+|.++.+.           .||+|++|++ ++++.|++++
T Consensus      1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~--~~TvI~IAHRLsTi~-----------~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A         1235 NPKILLLDEATSALDTESEKVVQEALDRARE--GRTCIVIAHRLNTVM-----------NADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp             CCSEEEEESCCCSTTSHHHHHHHHHHTTTSS--SSEEEEECSSSSTTT-----------TCSEEEEESSSSEEEEECHHH
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHcC--CCEEEEeccCHHHHH-----------hCCEEEEEECCEEEEECCHHH
Confidence            999999999988764      5555555543  899999999999886           6999999999 9999999999


Q ss_pred             eee
Q 023563          228 FTL  230 (280)
Q Consensus       228 ~~~  230 (280)
                      ++.
T Consensus      1302 Ll~ 1304 (1321)
T 4f4c_A         1302 LMS 1304 (1321)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            983

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=99.90  E-value=6.9e-24  Score=182.07  Aligned_cols=175  Identities=46%  Similarity=0.751  Sum_probs=148.6

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ  155 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~  155 (280)
                      ..|+++.|.||+||||||.|++.+..+...++++.++.+..+.|+. ..+..+.+...++.......++.+.     ..+
T Consensus        18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~-~~i~S~~g~~~~A~~~~~~~d~~~~-----~~~   91 (195)
T 1w4r_A           18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQE-----ALG   91 (195)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG-GSCCHHHHHHSEEEEESSGGGGHHH-----HHT
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch-hhhhhccCCcccceecCCHHHHHHh-----ccC
Confidence            3689999999999999977768888888889999999988777776 4466665554455445556666553     246


Q ss_pred             CCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecCC
Q 023563          156 VDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEE  235 (280)
Q Consensus       156 p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~~  235 (280)
                      .++|++||.+|..++.+.+..+++ .|+.||+.++|.++-.++|+++.+|+++||+|.-|+..|..||.++....|..++
T Consensus        92 ~DvIlIDEaQFfk~~ve~~~~L~~-~gk~VI~~GL~~DF~~~~F~~~~~Ll~~Ad~v~kl~aiC~~Cg~~A~~~~R~~~~  170 (195)
T 1w4r_A           92 VAVIGIDEGQFFPDIVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTE  170 (195)
T ss_dssp             CSEEEESSGGGCTTHHHHHHHHHH-TTCEEEEEEESBCTTSSBCTTGGGGGGGCSEEEECCEECTTTCSEECEEEESSCC
T ss_pred             CCEEEEEchhhhHHHHHHHHHHHH-CCCeEEEEecccccccccchhHHHHHHhcCeEEEeeeEecccCCeeeeEEEEcCC
Confidence            899999999877778888888886 4999999999999999999999999999999999999999999999999998877


Q ss_pred             CcEEEeCCccceeeeccchhcc
Q 023563          236 TKTELIGGSDIYMPVCRQHYVS  257 (280)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~  257 (280)
                      ..+.++|+.+.|.++||+||..
T Consensus       171 ~~~i~IGg~e~Y~~~CR~c~~~  192 (195)
T 1w4r_A          171 KEVEVIGGADKYHSVCRLCYFK  192 (195)
T ss_dssp             CSSCCCCCTTTEEEECHHHHTC
T ss_pred             CCEEEECCCCcEEEccHHHhhc
Confidence            7788899999999999999964

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.90  E-value=1.6e-24  Score=212.56  Aligned_cols=152  Identities=14%  Similarity=0.095  Sum_probs=101.4

Q ss_pred             EEE-cCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEE--------EecCCc----
Q 023563           53 VSP-RPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVA--------VIKSNK----  116 (280)
Q Consensus        53 l~~-~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~--------~~~~~~----  116 (280)
                      .++ +||+|+|+++ .+|+++| +|++||++||+||||||||||+ ++|+|+..  .|. +.        .+....    
T Consensus        21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLl-k~l~Gl~~p~~G~-~~~~~~~~~~~~~g~~~~~~   97 (538)
T 1yqt_A           21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAV-KILAGQLIPNLCG-DNDSWDGVIRAFRGNELQNY   97 (538)
T ss_dssp             ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHH-HHHHTSSCCCTTT-TCCSHHHHHHHTTTSTHHHH
T ss_pred             hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCc-cCcchhhhHHhhCCccHHHH
Confidence            455 6899999886 4999999 9999999999999999999999 99999742  222 10        000000    


Q ss_pred             -----ccccccceeeeeccc---------------------ccccccccCchHHHHH--------------HhhhhccCC
Q 023563          117 -----DTRYGLDSIVTHDGV---------------------KLPCCALTTLSSFRQK--------------FGSDAYDQV  156 (280)
Q Consensus       117 -----~~~~~~~~v~~~~~~---------------------~~~~~~~~~l~~~~~~--------------~a~aL~~~p  156 (280)
                           ..+..+..+++....                     ....+...++....++              .|+||+.+|
T Consensus        98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P  177 (538)
T 1yqt_A           98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNA  177 (538)
T ss_dssp             HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence                 000111111111000                     0001111122111111              167899999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeece
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTAR  218 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~  218 (280)
                      ++|||||||+.+      .++++|++++++ |.|||+||||++++.+          +||+|++|++.
T Consensus       178 ~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvi~vsHd~~~~~~----------~~dri~vl~~~  234 (538)
T 1yqt_A          178 TFYFFDEPSSYLDIRQRLNAARAIRRLSEE-GKSVLVVEHDLAVLDY----------LSDIIHVVYGE  234 (538)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHH----------HCSEEEEEEEE
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH----------hCCEEEEEcCc
Confidence            999999997764      478899999875 9999999999999986          99999999873

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.90  E-value=2.7e-24  Score=229.08  Aligned_cols=164  Identities=18%  Similarity=0.157  Sum_probs=116.6

Q ss_pred             cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------e
Q 023563           52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------N  108 (280)
Q Consensus        52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~  108 (280)
                      -|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+ ++|.|+..        +|.            .
T Consensus       387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~-~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~  465 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRLYDPLDGMVSIDGQDIRTINVRYLREI  465 (1284)
T ss_dssp             CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH-HHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred             eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence            5999999999964   4699999999999999999999999999999 99999732        333            3


Q ss_pred             EEEecCCcccccc-cceee--eecc----ccccccccc----------------------CchH-HHHH--HhhhhccCC
Q 023563          109 VAVIKSNKDTRYG-LDSIV--THDG----VKLPCCALT----------------------TLSS-FRQK--FGSDAYDQV  156 (280)
Q Consensus       109 i~~~~~~~~~~~~-~~~v~--~~~~----~~~~~~~~~----------------------~l~~-~~~~--~a~aL~~~p  156 (280)
                      +++++|++..-.. +...+  ....    ....+....                      +++. .+++  .||||+.+|
T Consensus       466 i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p  545 (1284)
T 3g5u_A          466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP  545 (1284)
T ss_dssp             EEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred             eEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence            6667666432100 00000  0000    000000111                      1111 1112  278999999


Q ss_pred             CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++|||||||+..|      +.+.++++. + |+|+|+|||+++.+.           .||+|++|++ ++++.|+++++.
T Consensus       546 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~i~-----------~~d~i~vl~~G~i~~~g~~~~l~  612 (1284)
T 3g5u_A          546 KILLLDEATSALDTESEAVVQAALDKAR-E-GRTTIVIAHRLSTVR-----------NADVIAGFDGGVIVEQGNHDELM  612 (1284)
T ss_dssp             SEEEEESTTCSSCHHHHHHHHHHHHHHH-T-TSEEEEECSCHHHHT-----------TCSEEEECSSSCCCCEECHHHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence            9999999987653      566666654 3 999999999999986           5999999999 999999998876

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.90  E-value=4.8e-24  Score=227.75  Aligned_cols=164  Identities=17%  Similarity=0.213  Sum_probs=120.2

Q ss_pred             cEEEcCceEEeC---CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCe------------e
Q 023563           52 MVSPRPPLFSLQ---NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGR------------N  108 (280)
Q Consensus        52 ~l~~~~ls~~y~---~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~------------~  108 (280)
                      -|+++||+++|+   ++++|+|+||+|++|+.++|+||+|||||||+ ++|.|+.        ++|.            .
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll-~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~  493 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTII-SLLLRYYDVLKGKITIDGVDVRDINLEFLRKN  493 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHH-HHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHH-HHhccccccccCcccCCCccchhccHHHHhhc
Confidence            599999999995   36799999999999999999999999999999 9999973        2332            4


Q ss_pred             EEEecCCcccccc-ccee--eeec----ccccccccccCchHHH-----------------------HHH--hhhhccCC
Q 023563          109 VAVIKSNKDTRYG-LDSI--VTHD----GVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQV  156 (280)
Q Consensus       109 i~~~~~~~~~~~~-~~~v--~~~~----~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p  156 (280)
                      +++++|++....+ +...  +...    .....+....++.++.                       +|.  |||++.+|
T Consensus       494 i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~  573 (1321)
T 4f4c_A          494 VAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP  573 (1321)
T ss_dssp             EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCC
T ss_pred             ccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCC
Confidence            6777776532110 0000  0000    0001111112222222                       222  78999999


Q ss_pred             CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++||||||++..|      +.+.|.++.+  |+|+|+|||+++.+.           .||+|++|++ ++++.|+.+++.
T Consensus       574 ~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls~i~-----------~aD~Iivl~~G~ive~Gth~eL~  640 (1321)
T 4f4c_A          574 KILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLSTIR-----------NADLIISCKNGQVVEVGDHRALM  640 (1321)
T ss_dssp             SEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTTTTT-----------TCSEEEEEETTEEEEEECHHHHH
T ss_pred             CEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHHHHH-----------hCCEEEEeeCCeeeccCCHHHHH
Confidence            9999999977653      7777877764  999999999999886           7999999999 999999999886

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.90  E-value=1.5e-24  Score=231.08  Aligned_cols=165  Identities=16%  Similarity=0.172  Sum_probs=115.2

Q ss_pred             ccEEEcCceEEeCCe---eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------e
Q 023563           51 SMVSPRPPLFSLQNR---NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------R  107 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~---~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~  107 (280)
                      ..|+++||+++|+++   ++|+|+||+|++||++||+||||||||||+ ++|.|+..        +|            +
T Consensus      1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~-~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A         1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV-QLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp             CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHH-HHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred             CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence            359999999999753   699999999999999999999999999999 99999732        22            2


Q ss_pred             eEEEecCCccccc-ccceee--eec------ccccccccccC----------------------chH-HHHH--Hhhhhc
Q 023563          108 NVAVIKSNKDTRY-GLDSIV--THD------GVKLPCCALTT----------------------LSS-FRQK--FGSDAY  153 (280)
Q Consensus       108 ~i~~~~~~~~~~~-~~~~v~--~~~------~~~~~~~~~~~----------------------l~~-~~~~--~a~aL~  153 (280)
                      .+++++|++.... .+...+  ...      ..........+                      ++. -+++  .||||+
T Consensus      1108 ~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~ 1187 (1284)
T 3g5u_A         1108 QLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187 (1284)
T ss_dssp             SCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH
T ss_pred             ceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH
Confidence            3455555432100 000000  000      00000000001                      111 1111  178999


Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|++|||||||+..      .+.+.|+++. + |+|+|+||||++++.           .||||++|++ ++++.|+++
T Consensus      1188 ~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~-~~tvi~isH~l~~i~-----------~~dri~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A         1188 RQPHILLLDEATSALDTESEKVVQEALDKAR-E-GRTCIVIAHRLSTIQ-----------NADLIVVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp             HCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-S-SSCEEEECSCTTGGG-----------SCSEEEEEETBEEEEEECHH
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-C-CCEEEEEecCHHHHH-----------cCCEEEEEECCEEEEECCHH
Confidence            999999999998764      3667776643 3 899999999999885           6999999999 999999999


Q ss_pred             eee
Q 023563          227 FFT  229 (280)
Q Consensus       227 ~~~  229 (280)
                      ++.
T Consensus      1255 ~l~ 1257 (1284)
T 3g5u_A         1255 QLL 1257 (1284)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            987

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.89  E-value=7.8e-24  Score=218.49  Aligned_cols=53  Identities=17%  Similarity=0.245  Sum_probs=49.4

Q ss_pred             CccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           50 HSMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      .++|+++|++++|++  +.+|+|+||+|++|++++|+||||||||||+ ++|.|+.
T Consensus       669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLL-klLaGll  723 (986)
T 2iw3_A          669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLI-NVLTGEL  723 (986)
T ss_dssp             SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHH-HHHTTSS
T ss_pred             CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCC
Confidence            468999999999965  6799999999999999999999999999999 9999974

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=99.88  E-value=1.5e-22  Score=176.04  Aligned_cols=179  Identities=34%  Similarity=0.601  Sum_probs=140.4

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ  155 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~  155 (280)
                      ..|.+..|.||+||||||.+++.+..+...+.++..+.+..+.|+....+..+.+...++.......++.+.    +..+
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~----i~~~  101 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTH----DLTN  101 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGS----CCTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHH----HhcC
Confidence            568999999999999999554778777788888888887777777766777777776666555555555432    2368


Q ss_pred             CCEEEEeCcccHH-HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecC
Q 023563          156 VDVIGIDEAQFFE-DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE  234 (280)
Q Consensus       156 p~lLlLDEP~~~~-~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~  234 (280)
                      ++++++||.+|.. ++.+.+.++++ .|+.||+.+.|.++-.++|+++.+|+++||+|.-|+..|..||.++.+..|..+
T Consensus       102 ~dvV~IDEaQFf~~~~v~~l~~la~-~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl~aiC~~CG~~A~~~~R~~~  180 (219)
T 3e2i_A          102 VDVIGIDEVQFFDDEIVSIVEKLSA-DGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLIN  180 (219)
T ss_dssp             CSEEEECCGGGSCTHHHHHHHHHHH-TTCEEEEEEESBCTTSCBCTTHHHHHHHCSEEEEECEECTTTCSEECEEEEEET
T ss_pred             CCEEEEechhcCCHHHHHHHHHHHH-CCCEEEEeecccccccCCCccHHHHHHhcceEEEeeeEccCCCCcceEEEEEEC
Confidence            9999999998876 58899999986 599999999999999999999999999999999999999999999999988766


Q ss_pred             C------CcEEEeCCccceeeeccchhccCc
Q 023563          235 E------TKTELIGGSDIYMPVCRQHYVSGQ  259 (280)
Q Consensus       235 ~------~~~~~~~~~~~~~~~~~~~~~~~~  259 (280)
                      +      ..+.++|+++.|.++||+||....
T Consensus       181 g~~~~~~g~~i~IGg~e~Y~~~CR~cy~~~~  211 (219)
T 3e2i_A          181 GKPAKIDDPIILVGANESYEPRCRAHHIVAP  211 (219)
T ss_dssp             TEECBTTCCSCCSSCCEEEEEECGGGCCCBC
T ss_pred             CcccccCCCEEEECCCccEEEcCHHhhcCcc
Confidence            3      345667999999999999997654

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=99.88  E-value=2.9e-22  Score=176.04  Aligned_cols=178  Identities=45%  Similarity=0.734  Sum_probs=139.3

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhcc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYD  154 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~  154 (280)
                      -..|.++.+.||+||||||.+++.+..+...|+++.++.+..+.|++ ..+..+.+....+.......++.+     .+.
T Consensus        16 ~~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~-----~~~   89 (234)
T 2orv_A           16 KTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQ-----EAL   89 (234)
T ss_dssp             --CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHH-----HHT
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHH-----Hhc
Confidence            34699999999999999999878888888889999888887777877 677776655444433333333333     236


Q ss_pred             CCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecC
Q 023563          155 QVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE  234 (280)
Q Consensus       155 ~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~  234 (280)
                      +.+++++||.++..++.++++.+.+ .|+.||+.++|.++-.++|+++.+|+++||.|.-|+..|..||.++....|..+
T Consensus        90 ~~dvViIDEaQF~~~v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~VtelkaIC~~Cg~~A~~t~R~~~  168 (234)
T 2orv_A           90 GVAVIGIDEGQFFPDIVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGT  168 (234)
T ss_dssp             TCSEEEESSGGGCTTHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECCEECTTTCSEECEEEESSC
T ss_pred             cCCEEEEEchhhhhhHHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeeeeEecCcCCcceEEEEEcC
Confidence            7899999999887777777777776 499999999999999999999999999999999999988889999999999888


Q ss_pred             CCcEEEeCCccceeeeccchhccCc
Q 023563          235 ETKTELIGGSDIYMPVCRQHYVSGQ  259 (280)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~  259 (280)
                      +..+.++|+.+.|.++||+||....
T Consensus       169 ~~~~i~IGg~e~Y~~~CR~c~~~~~  193 (234)
T 2orv_A          169 EKEVEVIGGADKYHSVCRLCYFKKA  193 (234)
T ss_dssp             CCSSCCCCCTTTEEEECHHHHHC--
T ss_pred             CCCEEEECCCCcEEEccHHhhhccc
Confidence            7778889999999999999997544

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.87  E-value=2.9e-23  Score=208.31  Aligned_cols=69  Identities=19%  Similarity=0.187  Sum_probs=60.5

Q ss_pred             hhhhccCCC--EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563          149 GSDAYDQVD--VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL-----  215 (280)
Q Consensus       149 a~aL~~~p~--lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L-----  215 (280)
                      |+||+.+|+  +|||||||+.+      .++++|++++++ |.|||+||||++++.           .||+|++|     
T Consensus       214 ArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~-----------~~d~ii~l~~g~~  281 (670)
T 3ux8_A          214 ATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDEDTML-----------AADYLIDIGPGAG  281 (670)
T ss_dssp             HHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-TCEEEEECCCHHHHH-----------HCSEEEEECSSSG
T ss_pred             HHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHh-----------hCCEEEEeccccc
Confidence            678999988  99999997654      589999999876 999999999999765           79999999     


Q ss_pred             -ec-eeccccCcceee
Q 023563          216 -TA-RCEFCGKRAFFT  229 (280)
Q Consensus       216 -~~-~i~~~g~~~~~~  229 (280)
                       ++ ++++.|+++++.
T Consensus       282 ~~~G~i~~~g~~~~~~  297 (670)
T 3ux8_A          282 IHGGEVVAAGTPEEVM  297 (670)
T ss_dssp             GGCCSEEEEECHHHHH
T ss_pred             ccCCEEEEecCHHHHh
Confidence             77 899999988775

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=99.87  E-value=2.3e-22  Score=174.99  Aligned_cols=178  Identities=35%  Similarity=0.599  Sum_probs=133.1

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhc-
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAY-  153 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~-  153 (280)
                      -.+|.++.+.||+||||||.+++.+..+...|+++.++.+..+.+++...+..+.+...++.......++.+     .+ 
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~-----~~~   99 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFK-----HIT   99 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGG-----GCC
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHH-----HHh
Confidence            356899999999999999999788888888899998888777766665555555544433333333332222     22 


Q ss_pred             cCCCEEEEeCcccH-HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeee
Q 023563          154 DQVDVIGIDEAQFF-EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRK  232 (280)
Q Consensus       154 ~~p~lLlLDEP~~~-~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~  232 (280)
                      .+.+++++||.++. .++++.+..++++ |+.||+.++|.++-.++|+++.+|+++||.|.-|+..|..||.++....|.
T Consensus       100 ~~~dvViIDEaQF~~~~~V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~aiC~~Cg~~A~~~~R~  178 (214)
T 2j9r_A          100 EEMDVIAIDEVQFFDGDIVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCSACGSPASRTQRL  178 (214)
T ss_dssp             SSCCEEEECCGGGSCTTHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCCBCTTTSSBCCEEEEE
T ss_pred             cCCCEEEEECcccCCHHHHHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeeeeEecCcCCcceEEEEE
Confidence            25899999999886 3556889998876 999999999999999999999999999999999999888899999999888


Q ss_pred             cCCCc------EEEeCCccceeeeccchhccC
Q 023563          233 TEETK------TELIGGSDIYMPVCRQHYVSG  258 (280)
Q Consensus       233 ~~~~~------~~~~~~~~~~~~~~~~~~~~~  258 (280)
                      .++..      +.++|+++.|.++||+||...
T Consensus       179 ~~g~~a~~~g~~i~iGg~e~Y~~~CR~c~~~~  210 (214)
T 2j9r_A          179 IDGEPAAFDDPIILVGASESYEPRCRHCHAVP  210 (214)
T ss_dssp             ETTEECCTTSCSCCCCSTTTEEEECTTTCCCC
T ss_pred             eCCCccccCCCEEEECCCCcEEEcchHhhcCc
Confidence            76554      567899999999999999643

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=99.87  E-value=4.3e-22  Score=170.90  Aligned_cols=178  Identities=34%  Similarity=0.599  Sum_probs=132.2

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ  155 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~  155 (280)
                      .+|.++.+.||+||||||.+++.+..+...|.++.++.+..+.+++...+..+.+...+.....+..++.+..    ..+
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~----~~~   81 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYF----EED   81 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHC----CTT
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHH----hcc
Confidence            5689999999999999999977777777889999888766666665545555554333333333333443321    125


Q ss_pred             CCEEEEeCcccH-HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecC
Q 023563          156 VDVIGIDEAQFF-EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE  234 (280)
Q Consensus       156 p~lLlLDEP~~~-~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~  234 (280)
                      .++|++||.++. .++++.++.++++ |+.||+.+++.++-.++|+++.+|+++||.|.-|+..|..||.++.+..|..+
T Consensus        82 ~dvViIDEaqfl~~~~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~~iC~~Cg~~a~~~~r~~~  160 (191)
T 1xx6_A           82 TEVIAIDEVQFFDDEIVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQAICVVCGNPATRTQRLIN  160 (191)
T ss_dssp             CSEEEECSGGGSCTHHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCEECTTTSSEECEEEEEET
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeeeeEccccCCcceEEEEEcC
Confidence            799999999776 4668889998886 99999999999999999999999999999999999988889999888888766


Q ss_pred             CCc------EEEeCCccceeeeccchhccC
Q 023563          235 ETK------TELIGGSDIYMPVCRQHYVSG  258 (280)
Q Consensus       235 ~~~------~~~~~~~~~~~~~~~~~~~~~  258 (280)
                      +..      +..+|+.+.|.++||+||..+
T Consensus       161 g~~~~~~~~~v~igg~~~Y~~~Cr~~~~~~  190 (191)
T 1xx6_A          161 GKPAFYDDPVVLIGAMESYEARCRKCHVVP  190 (191)
T ss_dssp             TEECCTTCCCC-----EEEEEECTTTCCCC
T ss_pred             CCccccCCCEEEECCcCcEEEcchHhhcCC
Confidence            544      667899999999999999643

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.2e-22  Score=201.53  Aligned_cols=149  Identities=15%  Similarity=0.142  Sum_probs=96.4

Q ss_pred             cCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEE----------EecCCccc-----
Q 023563           56 RPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVA----------VIKSNKDT-----  118 (280)
Q Consensus        56 ~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~----------~~~~~~~~-----  118 (280)
                      +|++++|+.. ..|++++ ++++||++||+||||||||||+ ++|+|+.. ....+.          ++......     
T Consensus        81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLL-kiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~  158 (608)
T 3j16_B           81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTAL-KILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK  158 (608)
T ss_dssp             TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHH-HHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred             CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHH-HHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence            4688999764 4677777 6999999999999999999999 99999743 111111          00000000     


Q ss_pred             --ccccceee--eecc--------------------------cccccccccCchHHHHH--------------Hhhhhcc
Q 023563          119 --RYGLDSIV--THDG--------------------------VKLPCCALTTLSSFRQK--------------FGSDAYD  154 (280)
Q Consensus       119 --~~~~~~v~--~~~~--------------------------~~~~~~~~~~l~~~~~~--------------~a~aL~~  154 (280)
                        ...+..++  +...                          .....+...++..+.++              .|+||+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~  238 (608)
T 3j16_B          159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ  238 (608)
T ss_dssp             HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence              00000000  0000                          00000111112111111              1678999


Q ss_pred             CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          155 QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       155 ~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +|++||||||++.+      .++++|++++++ |.|||+||||++++.+          +||+|++|.+
T Consensus       239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHdl~~~~~----------~~drv~vl~~  296 (608)
T 3j16_B          239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKYVICVEHDLSVLDY----------LSDFVCIIYG  296 (608)
T ss_dssp             CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT-TCEEEEECSCHHHHHH----------HCSEEEEEES
T ss_pred             CCCEEEEECcccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence            99999999997765      477888888776 9999999999999987          9999999976

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=99.85  E-value=5.5e-21  Score=167.74  Aligned_cols=182  Identities=35%  Similarity=0.592  Sum_probs=138.1

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhh-cc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDA-YD  154 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL-~~  154 (280)
                      .+|.++.+.||+|+||||++++.+..+...|.++.++.+..+.+ ....+..+.+...+........++++.....+ -.
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~   88 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFND   88 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCT
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCC
Confidence            46899999999999999999677777777888888876555444 43344444443333333333344444332222 13


Q ss_pred             CCCEEEEeCcccH-HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeec
Q 023563          155 QVDVIGIDEAQFF-EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKT  233 (280)
Q Consensus       155 ~p~lLlLDEP~~~-~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~  233 (280)
                      +++++++||.++. .++.+.+..+++. |+.||+++|+.++..++|+...+|+++||+|..|+..|..||.++....|..
T Consensus        89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~~ic~~Cg~~a~~~~r~~  167 (223)
T 2b8t_A           89 ETKVIGIDEVQFFDDRICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKI  167 (223)
T ss_dssp             TCCEEEECSGGGSCTHHHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECCEECTTTCSEECEEEEEE
T ss_pred             CCCEEEEecCccCcHHHHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeecceeccccCCccceeEEec
Confidence            6999999999764 4677888888886 9999999999999999999999999999999999998888999998888876


Q ss_pred             CCCc------EEEeCCccceeeeccchhccCc
Q 023563          234 EETK------TELIGGSDIYMPVCRQHYVSGQ  259 (280)
Q Consensus       234 ~~~~------~~~~~~~~~~~~~~~~~~~~~~  259 (280)
                      ++..      ..++|+.+.|.++||+||....
T Consensus       168 ~g~~~~~~~~~v~iGg~~~Y~~~Cr~c~~~~~  199 (223)
T 2b8t_A          168 DGKHADYNDDIVKIGCQEFYSAVCRHHHKVPN  199 (223)
T ss_dssp             TTEECCTTSCSCCCCSTTTEEEECGGGCCCTT
T ss_pred             CCCccccCCCeEEECCcceEEeeChhhhcCcc
Confidence            5443      4557888999999999997543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.84  E-value=1.9e-21  Score=195.08  Aligned_cols=69  Identities=20%  Similarity=0.216  Sum_probs=60.4

Q ss_pred             hhhhccCC---CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563          149 GSDAYDQV---DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----  215 (280)
Q Consensus       149 a~aL~~~p---~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----  215 (280)
                      |+||+.+|   ++|||||||+.+      .++++|++++++ |+|||+||||++++.           .||+|++|    
T Consensus       555 AraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~~~-----------~~d~i~~l~~~~  622 (670)
T 3ux8_A          555 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVIK-----------TADYIIDLGPEG  622 (670)
T ss_dssp             HHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHT-----------TCSEEEEEESSS
T ss_pred             HHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-----------hCCEEEEecCCc
Confidence            67898876   599999997654      588999999876 999999999999874           79999999    


Q ss_pred             --ec-eeccccCcceee
Q 023563          216 --TA-RCEFCGKRAFFT  229 (280)
Q Consensus       216 --~~-~i~~~g~~~~~~  229 (280)
                        ++ ++++.|+++++.
T Consensus       623 g~~~G~i~~~g~~~~~~  639 (670)
T 3ux8_A          623 GDRGGQIVAVGTPEEVA  639 (670)
T ss_dssp             GGGCCEEEEEECHHHHH
T ss_pred             CCCCCEEEEecCHHHHH
Confidence              77 999999999886

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=99.84  E-value=3e-21  Score=164.37  Aligned_cols=176  Identities=34%  Similarity=0.547  Sum_probs=131.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCC
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQV  156 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p  156 (280)
                      +|.++.+.||+||||||++++++..+...|.++.++.+..+.+++...+..+.+.........+..++.+.    +..++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~----~~~~~   77 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKY----IEEDT   77 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGG----CCTTE
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHH----hcCCC
Confidence            48899999999999999986777666667777777765555555443444433322222222223322221    11368


Q ss_pred             CEEEEeCcccH-HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceecccc-CcceeeeeecC
Q 023563          157 DVIGIDEAQFF-EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCG-KRAFFTLRKTE  234 (280)
Q Consensus       157 ~lLlLDEP~~~-~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g-~~~~~~~~~~~  234 (280)
                      ++|++||.++. .++.+.++.++++ |..|++++++.++..+.|+....++++||.|.-|+..|..|| .++.+..|..+
T Consensus        78 dvviIDE~Q~~~~~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ic~~cg~~~a~~~~r~~~  156 (184)
T 2orw_A           78 RGVFIDEVQFFNPSLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAG  156 (184)
T ss_dssp             EEEEECCGGGSCTTHHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCBCCTTTCCSCBCEEEECSS
T ss_pred             CEEEEECcccCCHHHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEeeeecCCCCCeeceeEEEEcC
Confidence            99999999776 5678888888887 999999999999999999999999999999999988777899 89999989887


Q ss_pred             CCcEEEeCCccceeeeccchhcc
Q 023563          235 ETKTELIGGSDIYMPVCRQHYVS  257 (280)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~  257 (280)
                      +....++|+++.|.++||+||..
T Consensus       157 ~~~~~~ig~~~~Y~~~cr~~~~~  179 (184)
T 2orw_A          157 GEEEIDVGGQEKYIAVCRDCYNT  179 (184)
T ss_dssp             CSCSCCCCSTTTEEEECHHHHHH
T ss_pred             CCCEEEECCCCcEEEccHHHHhh
Confidence            77777889999999999999954

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.83  E-value=4.6e-21  Score=187.96  Aligned_cols=57  Identities=23%  Similarity=0.215  Sum_probs=50.4

Q ss_pred             hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      |+||+.+|++|||||||+.+      .++++|+++++  |+|||+||||++++..          +||+|++|++
T Consensus       150 A~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~tii~vsHdl~~~~~----------~~d~i~vl~~  212 (538)
T 3ozx_A          150 AASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDHDLIVLDY----------LTDLIHIIYG  212 (538)
T ss_dssp             HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSEEEEECSCHHHHHH----------HCSEEEEEEE
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCEEEEEEeChHHHHh----------hCCEEEEecC
Confidence            67899999999999997754      47788888853  8999999999999986          9999999987

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.81  E-value=9.6e-22  Score=169.32  Aligned_cols=140  Identities=13%  Similarity=0.061  Sum_probs=81.6

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---CeeEEEecCCcccccccceeeeeccc----------
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---GRNVAVIKSNKDTRYGLDSIVTHDGV----------  131 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---g~~i~~~~~~~~~~~~~~~v~~~~~~----------  131 (280)
                      ..+++|  .+|++|++++|+||||||||||+ ++|.|+...   ...+....+....+.+++++++....          
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl-~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l   85 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVV-RCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL   85 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHH-HHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHH-HHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence            456777  79999999999999999999999 999997420   00110001111112233344331100          


Q ss_pred             -----------cc------------cc------ccccCchHHHHHHhh---hhccCCCEEEEeCccc----------HHH
Q 023563          132 -----------KL------------PC------CALTTLSSFRQKFGS---DAYDQVDVIGIDEAQF----------FED  169 (280)
Q Consensus       132 -----------~~------------~~------~~~~~l~~~~~~~a~---aL~~~p~lLlLDEP~~----------~~~  169 (280)
                                 ..            ..      +...++..+.+++..   +|+.+|++++||||+.          +..
T Consensus        86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~  165 (207)
T 1znw_A           86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRR  165 (207)
T ss_dssp             EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHH
T ss_pred             eeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHH
Confidence                       00            00      111222333333333   6788999999999954          345


Q ss_pred             HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          170 LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       170 i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ++++++++.++.|.|+|++|||++++.+          +||+|++|..
T Consensus       166 l~~~l~~l~~~~g~tvi~vtHdl~~~~~----------~~d~i~~l~~  203 (207)
T 1znw_A          166 LDTARIELAAQGDFDKVVVNRRLESACA----------ELVSLLVGTA  203 (207)
T ss_dssp             HHHHHHHHHGGGGSSEEEECSSHHHHHH----------HHHHHHC---
T ss_pred             HHHHHHHHhhhccCcEEEECCCHHHHHH----------HHHHHHHhcc
Confidence            8888888876569999999999999987          9999998853

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.81  E-value=2.9e-22  Score=193.05  Aligned_cols=158  Identities=13%  Similarity=0.037  Sum_probs=107.3

Q ss_pred             CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CC-eeEEEecCCcccccccceee
Q 023563           50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KG-RNVAVIKSNKDTRYGLDSIV  126 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g-~~i~~~~~~~~~~~~~~~v~  126 (280)
                      .+|++++||+++|+      ++||++++|++++|+||||||||||+ ++|+|+..  .| ..+.+-. +.  +..+.+++
T Consensus       116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLl-r~L~Gl~~p~~G~~pI~vdg-~~--~~~i~~vp  185 (460)
T 2npi_A          116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLS-RTLCSYALKFNAYQPLYINL-DP--QQPIFTVP  185 (460)
T ss_dssp             CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHH-HHHHHTTHHHHCCCCEEEEC-CT--TSCSSSCS
T ss_pred             cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHH-HHHhCcccccCCceeEEEcC-Cc--cCCeeeec
Confidence            56899999999996      79999999999999999999999999 99999843  33 2132221 10  11111111


Q ss_pred             eec---------------------------ccccccccccCchHH----------HHHH--hhh--hccCCCE----EEE
Q 023563          127 THD---------------------------GVKLPCCALTTLSSF----------RQKF--GSD--AYDQVDV----IGI  161 (280)
Q Consensus       127 ~~~---------------------------~~~~~~~~~~~l~~~----------~~~~--a~a--L~~~p~l----LlL  161 (280)
                      |..                           ....+.+...++..+          .++.  |++  |+.+|++    |||
T Consensus       186 q~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL  265 (460)
T 2npi_A          186 GCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV  265 (460)
T ss_dssp             SCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred             cchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence            100                           001111222222221          1122  567  9999999    999


Q ss_pred             eC-cccHHHH-HHHHHHHHhhcCCEEEEEEechh------HhhhccCCccccccccce-----EEEee-c-eeccccCcc
Q 023563          162 DE-AQFFEDL-YDFCREAADHDGKTVIVAGLDGD------YLRRSFGSVIDIIPLADS-----VTKLT-A-RCEFCGKRA  226 (280)
Q Consensus       162 DE-P~~~~~i-~~~l~~l~~~~g~tviivtHdl~------~~~~~~~~~~~ll~~aD~-----i~~L~-~-~i~~~g~~~  226 (280)
                      || |++.+|. .+.|.++.++.++|+|+||||.+      ++.+          +||+     |++|+ + +++ .|+++
T Consensus       266 DEpPts~LD~~~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~----------~~dr~~~~~vi~l~k~G~iv-~g~~~  334 (460)
T 2npi_A          266 DTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKT----------FGPELGNNNIFFIPKLDGVS-AVDDV  334 (460)
T ss_dssp             ECCCGGGSCSSCHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHH----------HHHHHCGGGEEEECCCTTCC-CCCHH
T ss_pred             eCCcccccChhHHHHHHHHHHhCCCEEEEEccCchhhhHHHHHH----------hcccccCCEEEEEeCCCcEE-ECCHH
Confidence            99 8876432 45556665556899999999987      6665          9999     99998 7 887 88876


Q ss_pred             ee
Q 023563          227 FF  228 (280)
Q Consensus       227 ~~  228 (280)
                      ++
T Consensus       335 ~~  336 (460)
T 2npi_A          335 YK  336 (460)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.81  E-value=2.6e-20  Score=156.04  Aligned_cols=125  Identities=9%  Similarity=0.045  Sum_probs=72.2

Q ss_pred             eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCee--EEEecCCcccccccceeee----------ecccccccc
Q 023563           70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRN--VAVIKSNKDTRYGLDSIVT----------HDGVKLPCC  136 (280)
Q Consensus        70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~--i~~~~~~~~~~~~~~~v~~----------~~~~~~~~~  136 (280)
                      ||||+|++||+++|+||||||||||+ +++.+- .....+  .+++.|+............          ..+.. ...
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~-~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~   78 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFA-KKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKL-TVV   78 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHH-HHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCC-EEE
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHH-HHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCe-EEE
Confidence            68999999999999999999999999 743321 000000  0111222110000000000          00000 000


Q ss_pred             ccc--CchHHHH--HHhhhhccCCCEEEEeCcccHHH----------------------HHHHHHHHHhhcCCEEEEEEe
Q 023563          137 ALT--TLSSFRQ--KFGSDAYDQVDVIGIDEAQFFED----------------------LYDFCREAADHDGKTVIVAGL  190 (280)
Q Consensus       137 ~~~--~l~~~~~--~~a~aL~~~p~lLlLDEP~~~~~----------------------i~~~l~~l~~~~g~tviivtH  190 (280)
                      ...  ......+  ..|++++.+|++|+||||++..+                      +++.|++++++ |.|+|++||
T Consensus        79 ~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH  157 (171)
T 4gp7_A           79 DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILN  157 (171)
T ss_dssp             ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEEC
T ss_pred             ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeC
Confidence            000  1111122  23789999999999999965543                      45566667776 999999999


Q ss_pred             chhHhhh
Q 023563          191 DGDYLRR  197 (280)
Q Consensus       191 dl~~~~~  197 (280)
                      |++++.+
T Consensus       158 ~~~~~~~  164 (171)
T 4gp7_A          158 SPEEVEE  164 (171)
T ss_dssp             SHHHHHH
T ss_pred             CHHHhhh
Confidence            9998864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.80  E-value=2.6e-20  Score=190.26  Aligned_cols=69  Identities=20%  Similarity=0.099  Sum_probs=59.8

Q ss_pred             hhhhccC---CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563          149 GSDAYDQ---VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----  215 (280)
Q Consensus       149 a~aL~~~---p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----  215 (280)
                      |++|+.+   |++|||||||+.+      .++++|++++++ |.|||++|||++++ +          +||+|++|    
T Consensus       742 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIvisHdl~~i-~----------~aDrii~L~p~~  809 (842)
T 2vf7_A          742 ATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAVEHKMQVV-A----------ASDWVLDIGPGA  809 (842)
T ss_dssp             HHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH-T----------TCSEEEEECSSS
T ss_pred             HHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHH-H----------hCCEEEEECCCC
Confidence            5678886   7999999997754      488889999876 99999999999998 4          89999999    


Q ss_pred             --ec-eeccccCcceee
Q 023563          216 --TA-RCEFCGKRAFFT  229 (280)
Q Consensus       216 --~~-~i~~~g~~~~~~  229 (280)
                        ++ ++++.|+++++.
T Consensus       810 g~~~G~Iv~~g~~~el~  826 (842)
T 2vf7_A          810 GEDGGRLVAQGTPAEVA  826 (842)
T ss_dssp             GGGCCSEEEEECHHHHT
T ss_pred             CCCCCEEEEEcCHHHHH
Confidence              56 899999998886

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.79  E-value=7.3e-20  Score=190.76  Aligned_cols=163  Identities=10%  Similarity=0.023  Sum_probs=101.1

Q ss_pred             CccEEEcC-----ceEEe-CCeeeeEeeeeEeeC-------ceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEE-EecCC
Q 023563           50 HSMVSPRP-----PLFSL-QNRNLHSEASVSSPS-------GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVA-VIKSN  115 (280)
Q Consensus        50 ~~~l~~~~-----ls~~y-~~~~vl~~isl~i~~-------Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~-~~~~~  115 (280)
                      .++|+++|     |++.| ++..+++|++|++++       |++++|+||||||||||| +.+ |+...-..++ ++++.
T Consensus       748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlL-r~i-Gl~~~~aqiG~~Vpq~  825 (1022)
T 2o8b_B          748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLM-RQA-GLLAVMAQMGCYVPAE  825 (1022)
T ss_dssp             CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHH-HHH-HHHHHHHTTTCCEESS
T ss_pred             CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHH-HHH-HHHHHHhheeEEeccC
Confidence            35799999     99999 778899999999987       999999999999999999 988 7643212223 55554


Q ss_pred             ccccccc-ceeeeecccccccccccCchHHHH-----HHhhhhccCCCEEEEeCcccH---H----HHHHHHHHHHhhcC
Q 023563          116 KDTRYGL-DSIVTHDGVKLPCCALTTLSSFRQ-----KFGSDAYDQVDVIGIDEAQFF---E----DLYDFCREAADHDG  182 (280)
Q Consensus       116 ~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~~-----~~a~aL~~~p~lLlLDEP~~~---~----~i~~~l~~l~~~~g  182 (280)
                      .. ..++ ..++.+.+... .. ..+...+..     ..+++++.+|++||||||+.+   .    .++++++.++++.|
T Consensus       826 ~~-~l~v~d~I~~rig~~d-~~-~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g  902 (1022)
T 2o8b_B          826 VC-RLTPIDRVFTRLGASD-RI-MSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIK  902 (1022)
T ss_dssp             EE-EECCCSBEEEECC-----------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSC
T ss_pred             cC-CCCHHHHHHHHcCCHH-HH-hhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCC
Confidence            32 1111 12222211100 00 011111111     125678899999999999433   1    25778888876559


Q ss_pred             CEEEEEEechhHhhhccCCccccccccceEEEeeceec--cccCcce
Q 023563          183 KTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCE--FCGKRAF  227 (280)
Q Consensus       183 ~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~--~~g~~~~  227 (280)
                      .++|++||+++++..          +||++.+++.++.  ..|.+++
T Consensus       903 ~~vl~~TH~~el~~~----------~~d~~~v~~g~~~~~~~~~~~~  939 (1022)
T 2o8b_B          903 CRTLFSTHYHSLVED----------YSQNVAVRLGHMACMVENECED  939 (1022)
T ss_dssp             CEEEEECCCHHHHHH----------TSSCSSEEEEEEEEC-------
T ss_pred             CEEEEEeCCHHHHHH----------hCCcceeecCeEEEEEecCccc
Confidence            999999999999986          8999988866444  5565544

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.77  E-value=1.3e-18  Score=179.13  Aligned_cols=69  Identities=22%  Similarity=0.209  Sum_probs=60.2

Q ss_pred             hhhhccCC---CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563          149 GSDAYDQV---DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----  215 (280)
Q Consensus       149 a~aL~~~p---~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----  215 (280)
                      |++|+.+|   ++|||||||+.+      .+++.|++++++ |.|||+||||++++.           .||+|++|    
T Consensus       817 AraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVIvI~HdL~~i~-----------~ADrIivLgp~g  884 (916)
T 3pih_A          817 ASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVIVIEHNLDVIK-----------NADHIIDLGPEG  884 (916)
T ss_dssp             HHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHT-----------TCSEEEEEESSS
T ss_pred             HHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-----------hCCEEEEecCCC
Confidence            66788765   799999998764      478889999876 999999999999885           69999999    


Q ss_pred             --ec-eeccccCcceee
Q 023563          216 --TA-RCEFCGKRAFFT  229 (280)
Q Consensus       216 --~~-~i~~~g~~~~~~  229 (280)
                        ++ ++++.|+++++.
T Consensus       885 g~~~G~Iv~~Gtpeel~  901 (916)
T 3pih_A          885 GKEGGYIVATGTPEEIA  901 (916)
T ss_dssp             GGGCCEEEEEESHHHHH
T ss_pred             CCCCCEEEEEcCHHHHH
Confidence              77 999999999987

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.77  E-value=1.9e-19  Score=185.04  Aligned_cols=69  Identities=20%  Similarity=0.211  Sum_probs=59.2

Q ss_pred             hhhhccC---CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563          149 GSDAYDQ---VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----  215 (280)
Q Consensus       149 a~aL~~~---p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----  215 (280)
                      |++|+.+   |++|||||||+.+      .++++|++++++ |.|||++|||++++.           +||+|++|    
T Consensus       857 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIvisHdl~~i~-----------~aDrIivL~p~g  924 (972)
T 2r6f_A          857 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVIK-----------TADYIIDLGPEG  924 (972)
T ss_dssp             HHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHT-----------TCSEEEEECSSS
T ss_pred             HHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHH-----------hCCEEEEEcCCC
Confidence            5678876   4999999997654      488889998875 999999999999874           79999999    


Q ss_pred             --ec-eeccccCcceee
Q 023563          216 --TA-RCEFCGKRAFFT  229 (280)
Q Consensus       216 --~~-~i~~~g~~~~~~  229 (280)
                        ++ ++++.|+++++.
T Consensus       925 G~~~G~Iv~~g~~~el~  941 (972)
T 2r6f_A          925 GDRGGQIVAVGTPEEVA  941 (972)
T ss_dssp             TTSCCSEEEEESHHHHH
T ss_pred             CCCCCEEEEecCHHHHH
Confidence              56 899999999886

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.76  E-value=4.4e-19  Score=173.21  Aligned_cols=172  Identities=12%  Similarity=0.008  Sum_probs=111.9

Q ss_pred             ccEEEcCceEEeCCeeeeEeeee-EeeCceEEEEEcCCCCcHHHHHHHH--Hhcchh-CCeeEEEecCCcc-----cccc
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASV-SSPSGEIHVIVGPMFAGKTTTLLRR--IQAETQ-KGRNVAVIKSNKD-----TRYG  121 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl-~i~~Gei~~liGpNGsGKSTLl~~~--l~gl~~-~g~~i~~~~~~~~-----~~~~  121 (280)
                      ++++.+++.+..++..+|++||| .|++|++++|+||||||||||+ ++  +.|+.. ....+.+......     ....
T Consensus        11 ~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~-~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~   89 (525)
T 1tf7_A           11 NNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFS-IQFLYNGIIEFDEPGVFVTFEETPQDIIKNARS   89 (525)
T ss_dssp             ---CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHH-HHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGG
T ss_pred             CCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH-HHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHH
Confidence            35777888777778889999999 9999999999999999999999 77  678765 3344433332211     1122


Q ss_pred             cceeeeecc----cc----------cccccccCchHHHHHHhhhhc-cCCCEEEEeCccc-----------HHHHHHHHH
Q 023563          122 LDSIVTHDG----VK----------LPCCALTTLSSFRQKFGSDAY-DQVDVIGIDEAQF-----------FEDLYDFCR  175 (280)
Q Consensus       122 ~~~v~~~~~----~~----------~~~~~~~~l~~~~~~~a~aL~-~~p~lLlLDEP~~-----------~~~i~~~l~  175 (280)
                      +++++|...    ..          ...+...++..+..+...+|. .+|++|++|||++           +..++++++
T Consensus        90 ~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~  169 (525)
T 1tf7_A           90 FGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVA  169 (525)
T ss_dssp             GTCCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHH
T ss_pred             cCCChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHH
Confidence            333333211    00          011122345556666666664 7999999999954           235888999


Q ss_pred             HHHhhcCCEEEEEEechhHhhhccCCcccc-ccccceEEEeec-eeccccCccee
Q 023563          176 EAADHDGKTVIVAGLDGDYLRRSFGSVIDI-IPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       176 ~l~~~~g~tviivtHdl~~~~~~~~~~~~l-l~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      ++++. |+|||++||+++++..  .....+ ..+||+|++|++ +.  .|.....
T Consensus       170 ~l~~~-g~tvl~itH~~~~~~~--~~~~~i~~~laD~vi~L~~~~~--~G~~~r~  219 (525)
T 1tf7_A          170 RLKQI-GATTVMTTERIEEYGP--IARYGVEEFVSDNVVILRNVLE--GERRRRT  219 (525)
T ss_dssp             HHHHH-TCEEEEEEECSSSSSC--SSTTSCHHHHCSEEEEEEEECS--TTCCEEE
T ss_pred             HHHHC-CCEEEEEecCCCCccc--cccccceeeeeeEEEEEEEEcc--CCceeEE
Confidence            98875 9999999999997510  000000 025999999998 53  3655433

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.76  E-value=4.2e-20  Score=160.37  Aligned_cols=129  Identities=12%  Similarity=0.097  Sum_probs=77.8

Q ss_pred             EEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEE--e-cCCcccccccceeeeec--cc-cc
Q 023563           60 FSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAV--I-KSNKDTRYGLDSIVTHD--GV-KL  133 (280)
Q Consensus        60 ~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~--~-~~~~~~~~~~~~v~~~~--~~-~~  133 (280)
                      ++|+++.+|+||    ++|++++|+||||||||||+ ++|+|+......+..  + .+....+..+++++|..  +. ..
T Consensus         8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl-~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~   82 (208)
T 3b85_A            8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLA-MAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPY   82 (208)
T ss_dssp             CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHH-HHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC------CTT
T ss_pred             CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHH-HHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHH
Confidence            456777889985    89999999999999999999 999998222211111  1 11112233455555532  11 01


Q ss_pred             c-----cc----cccCchHHHHH---------HhhhhccCCCEEEEeCcccH--HHHHHHHHHHHhhcCCEEEEEEechh
Q 023563          134 P-----CC----ALTTLSSFRQK---------FGSDAYDQVDVIGIDEAQFF--EDLYDFCREAADHDGKTVIVAGLDGD  193 (280)
Q Consensus       134 ~-----~~----~~~~l~~~~~~---------~a~aL~~~p~lLlLDEP~~~--~~i~~~l~~l~~~~g~tviivtHdl~  193 (280)
                      .     ..    ....+..+.++         .|++|+.+|++||||||++.  ..++++|+++ ++ |+||| +|||++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l-~~-g~tii-vtHd~~  159 (208)
T 3b85_A           83 LRPLHDALRDMVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRL-GF-GSKMV-VTGDIT  159 (208)
T ss_dssp             THHHHHHHTTTSCTTHHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTB-CT-TCEEE-EEEC--
T ss_pred             HHHHHHHHHHhccHHHHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHh-cC-CCEEE-EECCHH
Confidence            0     00    00011222221         26789999999999999754  4577777777 44 89999 999998


Q ss_pred             Hhh
Q 023563          194 YLR  196 (280)
Q Consensus       194 ~~~  196 (280)
                      ++.
T Consensus       160 ~~~  162 (208)
T 3b85_A          160 QVD  162 (208)
T ss_dssp             ---
T ss_pred             HHh
Confidence            664

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.74  E-value=1.6e-19  Score=166.91  Aligned_cols=137  Identities=14%  Similarity=0.062  Sum_probs=95.7

Q ss_pred             EcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCcccccc-cceeeeecccc
Q 023563           55 PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKDTRYG-LDSIVTHDGVK  132 (280)
Q Consensus        55 ~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~~~~~-~~~v~~~~~~~  132 (280)
                      ++++++ |  ..+++++||+|++|++++|+||||||||||+ ++|.|+... ...+.+-... ..... ....+   ...
T Consensus       151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll-~~l~g~~~~~~g~i~i~~~~-e~~~~~~~~~i---~~~  222 (330)
T 2pt7_A          151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFIPKEERIISIEDTE-EIVFKHHKNYT---QLF  222 (330)
T ss_dssp             TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHH-HHGGGGSCTTSCEEEEESSC-CCCCSSCSSEE---EEE
T ss_pred             cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCcEEEECCee-ccccccchhEE---EEE
Confidence            566666 6  4589999999999999999999999999999 999998543 3344333221 11100 00000   000


Q ss_pred             cccccccCchHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceE
Q 023563          133 LPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSV  212 (280)
Q Consensus       133 ~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i  212 (280)
                      ..     +-.......+++|..+|++||+|||+.. ++++.|+.+... +.|+|+++|+.+ +.+          .|||+
T Consensus       223 ~g-----gg~~~r~~la~aL~~~p~ilildE~~~~-e~~~~l~~~~~g-~~tvi~t~H~~~-~~~----------~~dri  284 (330)
T 2pt7_A          223 FG-----GNITSADCLKSCLRMRPDRIILGELRSS-EAYDFYNVLCSG-HKGTLTTLHAGS-SEE----------AFIRL  284 (330)
T ss_dssp             CB-----TTBCHHHHHHHHTTSCCSEEEECCCCST-HHHHHHHHHHTT-CCCEEEEEECSS-HHH----------HHHHH
T ss_pred             eC-----CChhHHHHHHHHhhhCCCEEEEcCCChH-HHHHHHHHHhcC-CCEEEEEEcccH-HHH----------Hhhhh
Confidence            00     2223444557899999999999999884 567788777642 458999999999 443          89999


Q ss_pred             EEeec
Q 023563          213 TKLTA  217 (280)
Q Consensus       213 ~~L~~  217 (280)
                      ++|.+
T Consensus       285 ~~l~~  289 (330)
T 2pt7_A          285 ANMSS  289 (330)
T ss_dssp             HHHHH
T ss_pred             eehhc
Confidence            99987

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.74  E-value=5.9e-19  Score=166.39  Aligned_cols=54  Identities=13%  Similarity=-0.015  Sum_probs=46.6

Q ss_pred             hhhhccCC--CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563          149 GSDAYDQV--DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL  215 (280)
Q Consensus       149 a~aL~~~p--~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L  215 (280)
                      |++|+.+|  ++||||||++.+      .+.+.|+++. + |.+||+||||++++.           +||++++|
T Consensus       307 A~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~~~-----------~~d~i~~l  368 (415)
T 4aby_A          307 AVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQIAA-----------RAHHHYKV  368 (415)
T ss_dssp             HHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHHHT-----------TCSEEEEE
T ss_pred             HHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHh-----------hcCeEEEE
Confidence            67788999  999999997654      4788888887 4 899999999998764           79999999

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.73  E-value=3.8e-18  Score=176.21  Aligned_cols=164  Identities=16%  Similarity=0.137  Sum_probs=100.4

Q ss_pred             cEEEcCceEEe-----CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceee
Q 023563           52 MVSPRPPLFSL-----QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIV  126 (280)
Q Consensus        52 ~l~~~~ls~~y-----~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~  126 (280)
                      .|.+++..+-+     ++..+++|+||++++|++++|+||||||||||| ++++++.+..+.-.+++........+..++
T Consensus       631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlL-r~ial~~~~aq~G~~vpa~~~~~~~~d~i~  709 (934)
T 3thx_A          631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYI-RQTGVIVLMAQIGCFVPCESAEVSIVDCIL  709 (934)
T ss_dssp             EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHH-HHHHHHHHHHHHTCCBSEEEEEEECCSEEE
T ss_pred             ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHH
Confidence            35555444333     345789999999999999999999999999999 888433110000001111100000111222


Q ss_pred             eecccccccccccCchHHH---HHHhhhh--ccCCCEEEEeCcccHH------HH-HHHHHHHHhhcCCEEEEEEechhH
Q 023563          127 THDGVKLPCCALTTLSSFR---QKFGSDA--YDQVDVIGIDEAQFFE------DL-YDFCREAADHDGKTVIVAGLDGDY  194 (280)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~---~~~a~aL--~~~p~lLlLDEP~~~~------~i-~~~l~~l~~~~g~tviivtHdl~~  194 (280)
                      .+.+....  ...+++.+.   .+.++++  +.+|++||||||+.+.      .+ +.+++.+.++.|.++|++||+.+.
T Consensus       710 ~~ig~~d~--l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el  787 (934)
T 3thx_A          710 ARVGAGDS--QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL  787 (934)
T ss_dssp             EECC-----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG
T ss_pred             HhcCchhh--HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH
Confidence            22111100  011222221   2224445  7899999999995432      34 566777776559999999999876


Q ss_pred             hhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          195 LRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       195 ~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +.           +||++..+.+ ++.+.++++++.
T Consensus       788 ~~-----------lad~~~~v~ng~v~~~~~~~~l~  812 (934)
T 3thx_A          788 TA-----------LANQIPTVNNLHVTALTTEETLT  812 (934)
T ss_dssp             GG-----------GGGTCTTEEEEEEEEEEETTEEE
T ss_pred             HH-----------HhcccceeEeeEEEEEecCCcEE
Confidence            64           8999999999 888888888775

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.71  E-value=3.4e-18  Score=153.18  Aligned_cols=139  Identities=14%  Similarity=0.128  Sum_probs=93.5

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C-CeeEEEecCCccc--ccccceeee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K-GRNVAVIKSNKDT--RYGLDSIVT  127 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~-g~~i~~~~~~~~~--~~~~~~v~~  127 (280)
                      +++++++++.    .+|+++|  +++|++++|+||||||||||+ ++|.|+.. . ...+.+.......  +.....+.+
T Consensus         5 ~~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll-~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q   77 (261)
T 2eyu_A            5 IPEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTI-ASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQ   77 (261)
T ss_dssp             -CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHH-HHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEE
T ss_pred             CCChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHH-HHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeH
Confidence            4677888753    5899999  999999999999999999999 99999743 2 4555544332211  111111111


Q ss_pred             ecccccccccccCchHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCcccccc
Q 023563          128 HDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIP  207 (280)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~  207 (280)
                      . .     ... +...+....+++|..+|++||+|||+-...+...++. +.. |.+|++++|+.+.. .          
T Consensus        78 ~-~-----~gl-~~~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~-~~~-g~~vl~t~H~~~~~-~----------  137 (261)
T 2eyu_A           78 R-E-----VGE-DTKSFADALRAALREDPDVIFVGEMRDLETVETALRA-AET-GHLVFGTLHTNTAI-D----------  137 (261)
T ss_dssp             E-E-----BTT-TBSCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHH-HHT-TCEEEEEECCSSHH-H----------
T ss_pred             H-H-----hCC-CHHHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHH-Hcc-CCEEEEEeCcchHH-H----------
Confidence            1 0     000 1123455567889999999999999855445555554 344 99999999998844 3          


Q ss_pred             ccceEEEeec
Q 023563          208 LADSVTKLTA  217 (280)
Q Consensus       208 ~aD~i~~L~~  217 (280)
                      .||+++.|..
T Consensus       138 ~~dri~~l~~  147 (261)
T 2eyu_A          138 TIHRIVDIFP  147 (261)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHhhhcC
Confidence            7888877753

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.69  E-value=3.7e-17  Score=152.94  Aligned_cols=56  Identities=16%  Similarity=0.147  Sum_probs=47.3

Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      .+|++||||||++.+      .++++|+++.++ |.|||+||||++++.           .||++++|++ ++++
T Consensus       302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~-g~tvi~itH~~~~~~-----------~~d~~~~l~~G~i~~  364 (365)
T 3qf7_A          302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERL-NKVIVFITHDREFSE-----------AFDRKLRITGGVVVN  364 (365)
T ss_dssp             TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS-SSEEEEEESCHHHHT-----------TCSCEEEEETTEEC-
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEecchHHHH-----------hCCEEEEEECCEEEe
Confidence            699999999997654      478888888765 999999999999853           7999999998 7753

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.69  E-value=2.9e-17  Score=148.35  Aligned_cols=153  Identities=16%  Similarity=0.121  Sum_probs=91.7

Q ss_pred             eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C-CeeEEEecCCccc---ccccceeeeec-----------
Q 023563           66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K-GRNVAVIKSNKDT---RYGLDSIVTHD-----------  129 (280)
Q Consensus        66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~-g~~i~~~~~~~~~---~~~~~~v~~~~-----------  129 (280)
                      .+|+++++.|++|++++|+||||||||||+ +.|++... . |..+.++......   ...+..+.+..           
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~-~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~  101 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFV-RQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKRE  101 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHH-HHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHH
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHH-HHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccC
Confidence            579999999999999999999999999999 88888643 3 5567666543211   00000000000           


Q ss_pred             ------------------ccccccc-cccCchHHHHHH-hhhhccCCCEEEEeCccc---H-------H---HHHHHHHH
Q 023563          130 ------------------GVKLPCC-ALTTLSSFRQKF-GSDAYDQVDVIGIDEAQF---F-------E---DLYDFCRE  176 (280)
Q Consensus       130 ------------------~~~~~~~-~~~~l~~~~~~~-a~aL~~~p~lLlLDEP~~---~-------~---~i~~~l~~  176 (280)
                                        ....... .......+..+. ++++..+|++||+|||++   .       .   .+++.|++
T Consensus       102 ~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~  181 (296)
T 1cr0_A          102 IIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKG  181 (296)
T ss_dssp             HHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHH
Confidence                              0000000 001223333332 445788999999999976   2       1   36777888


Q ss_pred             HHhhcCCEEEEEEech--hHhh----------hccCCccccccccceEEEeec-ee
Q 023563          177 AADHDGKTVIVAGLDG--DYLR----------RSFGSVIDIIPLADSVTKLTA-RC  219 (280)
Q Consensus       177 l~~~~g~tviivtHdl--~~~~----------~~~~~~~~ll~~aD~i~~L~~-~i  219 (280)
                      ++++.|+|||++||+.  +.-.          .-+.+...+..+||+|++|.. +.
T Consensus       182 la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          182 FAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             HHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             HHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            8877799999999995  4100          000011123348999999988 53

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.68  E-value=1.1e-16  Score=137.87  Aligned_cols=133  Identities=14%  Similarity=0.051  Sum_probs=77.4

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-------CeeEEEecCCcc-cccccceeeeecccccc----ccc---c
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-------GRNVAVIKSNKD-TRYGLDSIVTHDGVKLP----CCA---L  138 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-------g~~i~~~~~~~~-~~~~~~~v~~~~~~~~~----~~~---~  138 (280)
                      -|++|++++|+||||||||||+ +.|+|....       +..+.++..... ....+..+++.......    .+.   .
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll-~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   99 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA   99 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEEC
T ss_pred             CCCCCcEEEEECCCCCCHHHHH-HHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEec
Confidence            5899999999999999999999 989884221       333444433321 11112222222111100    000   0


Q ss_pred             cCchHH---HHH----Hhhhh--ccCCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCEEEEEEec
Q 023563          139 TTLSSF---RQK----FGSDA--YDQVDVIGIDEAQFF------------------EDLYDFCREAADHDGKTVIVAGLD  191 (280)
Q Consensus       139 ~~l~~~---~~~----~a~aL--~~~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~tviivtHd  191 (280)
                      ......   ...    ..+.+  ..+|++|++|||++.                  .++++.|.+++++.|+|||++||+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~  179 (231)
T 4a74_A          100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV  179 (231)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence            010110   111    11112  459999999999653                  146677777777679999999996


Q ss_pred             hhH----hhhccCCccccccccceEEEeec
Q 023563          192 GDY----LRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       192 l~~----~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      .+.    +..          +||++++|++
T Consensus       180 ~~~~g~~~~~----------~~d~~l~l~~  199 (231)
T 4a74_A          180 QANGGHILAH----------SATLRVYLRK  199 (231)
T ss_dssp             C-------------------CCSEEEEEEE
T ss_pred             ccCcchhhHh----------hceEEEEEEe
Confidence            654    554          8999999987

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.66  E-value=4.6e-17  Score=166.04  Aligned_cols=152  Identities=14%  Similarity=0.152  Sum_probs=92.1

Q ss_pred             CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccc-ceeeeecccccccc-cccC
Q 023563           63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGL-DSIVTHDGVKLPCC-ALTT  140 (280)
Q Consensus        63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~-~~v~~~~~~~~~~~-~~~~  140 (280)
                      +++.+++|+||+ ++|++++|+||||||||||+ ++++|+...++.-.++++.. ...++ ..++.+.+...... ....
T Consensus       593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlL-r~iagl~~~~q~G~~vpa~~-~~i~~~~~i~~~~~~~d~l~~~~st  669 (800)
T 1wb9_A          593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYM-RQTALIALMAYIGSYVPAQK-VEIGPIDRIFTRVGAADDLASGRST  669 (800)
T ss_dssp             SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHH-HHHHHHHHHHTTTCCBSSSE-EEECCCCEEEEEEC-----------
T ss_pred             CCceeeeccccc-CCCcEEEEECCCCCChHHHH-HHHHHHHHHHhcCcccchhc-ccceeHHHHHhhCCHHHHHHhhhhh
Confidence            556799999999 99999999999999999999 99998744221101222211 11111 11121111000000 0000


Q ss_pred             -chHHHHHHh--hhhccCCCEEEEeCcc---cH---HH-HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccc
Q 023563          141 -LSSFRQKFG--SDAYDQVDVIGIDEAQ---FF---ED-LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLAD  210 (280)
Q Consensus       141 -l~~~~~~~a--~aL~~~p~lLlLDEP~---~~---~~-i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD  210 (280)
                       ..+. .+.+  ...+.+|++||||||+   ..   .. .+++++.+.++.|.++|++||+.+++.           +||
T Consensus       670 f~~e~-~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-----------l~d  737 (800)
T 1wb9_A          670 FMVEM-TETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-----------LPE  737 (800)
T ss_dssp             CHHHH-HHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-----------HHH
T ss_pred             hhHHH-HHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-----------Hhh
Confidence             0111 1122  2347899999999993   32   22 367788887645999999999998764           899


Q ss_pred             eEEEeec-eeccccCcceee
Q 023563          211 SVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       211 ~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++..+.+ .+.+....+++.
T Consensus       738 ~~~~v~n~~~~~~~~~~~l~  757 (800)
T 1wb9_A          738 KMEGVANVHLDALEHGDTIA  757 (800)
T ss_dssp             HSTTEEEEEEEEEEETTEEE
T ss_pred             hhhceEEEEEEEEEcCCcEE
Confidence            9888887 666554444443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.65  E-value=1.9e-16  Score=144.75  Aligned_cols=156  Identities=20%  Similarity=0.219  Sum_probs=96.7

Q ss_pred             ceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCccc------------ccccce
Q 023563           58 PLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDT------------RYGLDS  124 (280)
Q Consensus        58 ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~------------~~~~~~  124 (280)
                      +...++....++++||++++|++++|+||||||||||+ +.|+|+. ..+..+.+...+...            +..+..
T Consensus        80 l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll-~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~  158 (302)
T 3b9q_A           80 VLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSL-GKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI  158 (302)
T ss_dssp             HHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHH-HHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceE
Confidence            44445544445679999999999999999999999999 8899873 355666555433210            123334


Q ss_pred             eeeecc-ccc------------------ccccccCc-----------hHHHHHHhhhhccCCC--EEEEeCcccHHHHHH
Q 023563          125 IVTHDG-VKL------------------PCCALTTL-----------SSFRQKFGSDAYDQVD--VIGIDEAQFFEDLYD  172 (280)
Q Consensus       125 v~~~~~-~~~------------------~~~~~~~l-----------~~~~~~~a~aL~~~p~--lLlLDEP~~~~~i~~  172 (280)
                      +++... ...                  ..+...++           +......+++++.+|+  +|+|| |++.++...
T Consensus       159 v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~  237 (302)
T 3b9q_A          159 VVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP  237 (302)
T ss_dssp             ECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred             EEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHH
Confidence            443222 100                  00111111           1112222678899999  99999 999988777


Q ss_pred             HHHHHHhhcCCEEEEEEechhHhhhccCCccccc-cccceEEEeec
Q 023563          173 FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDII-PLADSVTKLTA  217 (280)
Q Consensus       173 ~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll-~~aD~i~~L~~  217 (280)
                      .++++.++.|.|+|++|| ++...+ .|....+. .+.+.|.++..
T Consensus       238 ~~~~~~~~~g~t~iiiTh-lD~~~~-~g~~l~~~~~~~~pi~~i~~  281 (302)
T 3b9q_A          238 QAREFNEVVGITGLILTK-LDGSAR-GGCVVSVVEELGIPVKFIGV  281 (302)
T ss_dssp             HHHHHHHHTCCCEEEEEC-CSSCSC-THHHHHHHHHHCCCEEEEEC
T ss_pred             HHHHHHHhcCCCEEEEeC-CCCCCc-cChheehHHHHCCCEEEEeC
Confidence            888887666999999999 343321 22222222 35677787776

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.64  E-value=1e-16  Score=165.24  Aligned_cols=130  Identities=13%  Similarity=0.091  Sum_probs=76.7

Q ss_pred             CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchH
Q 023563           64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSS  143 (280)
Q Consensus        64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~  143 (280)
                      +..+++|+||++++|++++|+||||||||||| ++++++...++.-.+++........+..++.+.+.... + ..+...
T Consensus       659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlL-r~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~-l-~~~~st  735 (918)
T 3thx_B          659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYI-KQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADN-I-YKGRST  735 (918)
T ss_dssp             SSSCCEEEEECTTSCCEEEEESCCCHHHHHHH-HHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC------------CC
T ss_pred             CceecccccccCCCCeEEEEECCCCCchHHHH-HHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHH-H-HHhHHH
Confidence            46799999999999999999999999999999 88876533111111122111100001122222111000 0 011111


Q ss_pred             H---HHHHhh--hhccCCCEEEEeCcccHH------HHH-HHHHHHHhhcCCEEEEEEechhHhh
Q 023563          144 F---RQKFGS--DAYDQVDVIGIDEAQFFE------DLY-DFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       144 ~---~~~~a~--aL~~~p~lLlLDEP~~~~------~i~-~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      +   ..+.+.  ..+.+|++||||||+.+.      .+. .+++.++++.|.++|++||+++.+.
T Consensus       736 fs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~  800 (918)
T 3thx_B          736 FMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE  800 (918)
T ss_dssp             HHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             hhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence            1   111111  127899999999996543      344 6677776655999999999998774

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.64  E-value=2.1e-16  Score=147.47  Aligned_cols=130  Identities=18%  Similarity=0.162  Sum_probs=88.9

Q ss_pred             eeeEeeee-------EeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCcccc--cccceeeeecccccc
Q 023563           66 NLHSEASV-------SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNKDTR--YGLDSIVTHDGVKLP  134 (280)
Q Consensus        66 ~vl~~isl-------~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~~~~--~~~~~v~~~~~~~~~  134 (280)
                      ..|+++.+       .+.+|++++|+||||||||||+ +++.|+..  .+..+..+.......  .....+.+.. .   
T Consensus       104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL-~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~-~---  178 (356)
T 3jvv_A          104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTL-AAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQRE-V---  178 (356)
T ss_dssp             CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHH-HHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEE-B---
T ss_pred             CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHH-HHHHhcccCCCCcEEEEccCcHHhhhhccccceeeee-e---
Confidence            34555555       6788999999999999999999 99988743  245554443322211  1111222211 1   


Q ss_pred             cccccCchHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEE
Q 023563          135 CCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTK  214 (280)
Q Consensus       135 ~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~  214 (280)
                         ..+...+.+..+++|..+|++|++|||+.. +..+.+.+++.. |.+|++++|+.+.+.           .|||++.
T Consensus       179 ---~~~~~~~~~~La~aL~~~PdvillDEp~d~-e~~~~~~~~~~~-G~~vl~t~H~~~~~~-----------~~dRli~  242 (356)
T 3jvv_A          179 ---HRDTLGFSEALRSALREDPDIILVGEMRDL-ETIRLALTAAET-GHLVFGTLHTTSAAK-----------TIDRVVD  242 (356)
T ss_dssp             ---TTTBSCHHHHHHHHTTSCCSEEEESCCCSH-HHHHHHHHHHHT-TCEEEEEESCSSHHH-----------HHHHHHH
T ss_pred             ---ccccCCHHHHHHHHhhhCcCEEecCCCCCH-HHHHHHHHHHhc-CCEEEEEEccChHHH-----------HHHHHhh
Confidence               112234555678899999999999999854 445666666665 999999999999884           7899988


Q ss_pred             ee
Q 023563          215 LT  216 (280)
Q Consensus       215 L~  216 (280)
                      |.
T Consensus       243 l~  244 (356)
T 3jvv_A          243 VF  244 (356)
T ss_dssp             TS
T ss_pred             hc
Confidence            84

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.62  E-value=5.2e-16  Score=133.42  Aligned_cols=150  Identities=11%  Similarity=0.059  Sum_probs=86.9

Q ss_pred             eeeeEeeee-EeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCcccc---c---ccceeeeec---cc-c
Q 023563           65 RNLHSEASV-SSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNKDTR---Y---GLDSIVTHD---GV-K  132 (280)
Q Consensus        65 ~~vl~~isl-~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~~~~---~---~~~~v~~~~---~~-~  132 (280)
                      ...|+++.. .+++|++++|+||||||||||+ +.+++. ...+..+.++.......   .   .++..++..   .. .
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~-~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFS-LHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLII   87 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHH-HHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEE
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH-HHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEE
Confidence            346778877 8999999999999999999999 777754 34455666665432110   0   011111100   00 0


Q ss_pred             ccc----------ccccCchHHHHHHhh-hhccCCC--EEEEeCccc--------HHHHHHHHHHHHhhcCCEEEEEEec
Q 023563          133 LPC----------CALTTLSSFRQKFGS-DAYDQVD--VIGIDEAQF--------FEDLYDFCREAADHDGKTVIVAGLD  191 (280)
Q Consensus       133 ~~~----------~~~~~l~~~~~~~a~-aL~~~p~--lLlLDEP~~--------~~~i~~~l~~l~~~~g~tviivtHd  191 (280)
                      ...          ........+...... ....+|+  +|++|||++        ..++++.|++++++.|.|||+++|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~  167 (235)
T 2w0m_A           88 IDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQY  167 (235)
T ss_dssp             EECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-
T ss_pred             EeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            000          000122333332221 2235999  999999963        2457888888877779999999999


Q ss_pred             hhHhhhccCCccccccccceEEEeec
Q 023563          192 GDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       192 l~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ...-.+..+  ..+..+||+|++|+.
T Consensus       168 ~~~~~~~~~--~~~~~~~d~vi~l~~  191 (235)
T 2w0m_A          168 AITTSQAFG--FGVEHVADGIIRFRR  191 (235)
T ss_dssp             ------------CHHHHCSEEEEEEE
T ss_pred             Ccccccccc--cchheeeeEEEEEEE
Confidence            932000000  112238999999988

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.61  E-value=7.4e-16  Score=156.43  Aligned_cols=132  Identities=17%  Similarity=0.121  Sum_probs=81.5

Q ss_pred             cEEEcCceEEe---CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---CCeeEEEecCCcccccccce-
Q 023563           52 MVSPRPPLFSL---QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---KGRNVAVIKSNKDTRYGLDS-  124 (280)
Q Consensus        52 ~l~~~~ls~~y---~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---~g~~i~~~~~~~~~~~~~~~-  124 (280)
                      .|++++..+-+   ++..+++|+||+   |++++|+||||||||||+ ++++|+..   .|.-   ++..   +..++. 
T Consensus       550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlL-r~iagl~~~~~~G~~---vpa~---~~~i~~v  619 (765)
T 1ewq_A          550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFL-RQTALIALLAQVGSF---VPAE---EAHLPLF  619 (765)
T ss_dssp             SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHH-HHHHHHHHHHTTTCC---BSSS---EEEECCC
T ss_pred             cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHH-HHHHhhhhhcccCce---eehh---ccceeeH
Confidence            46666654433   456789999999   999999999999999999 99998743   2221   1211   111111 


Q ss_pred             --eeeecccccccccccCchHHH-H--HHhhhh--ccCCCEEEEeCc---ccHHHH----HHHHHHHHhhcCCEEEEEEe
Q 023563          125 --IVTHDGVKLPCCALTTLSSFR-Q--KFGSDA--YDQVDVIGIDEA---QFFEDL----YDFCREAADHDGKTVIVAGL  190 (280)
Q Consensus       125 --v~~~~~~~~~~~~~~~l~~~~-~--~~a~aL--~~~p~lLlLDEP---~~~~~i----~~~l~~l~~~~g~tviivtH  190 (280)
                        ++...... +.+ ..+.+.+. +  ..++++  +.+|+++|||||   |+..|-    +.++..+.+ .|.++|++||
T Consensus       620 ~~i~~~~~~~-d~l-~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH  696 (765)
T 1ewq_A          620 DGIYTRIGAS-DDL-AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATH  696 (765)
T ss_dssp             SEEEEECCC--------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECC
T ss_pred             HHhhccCCHH-HHH-HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence              11111100 000 01122221 1  124455  899999999999   877652    344455555 4999999999


Q ss_pred             chhHhh
Q 023563          191 DGDYLR  196 (280)
Q Consensus       191 dl~~~~  196 (280)
                      +.+++.
T Consensus       697 ~~~l~~  702 (765)
T 1ewq_A          697 YFELTA  702 (765)
T ss_dssp             CHHHHT
T ss_pred             CHHHHH
Confidence            998774

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.61  E-value=1e-18  Score=159.95  Aligned_cols=146  Identities=10%  Similarity=-0.051  Sum_probs=95.8

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccc-----cc-cccee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDT-----RY-GLDSI  125 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~-----~~-~~~~v  125 (280)
                      +|+++||+++|+ ..+|+++||+|++|++++|+||||||||||+ ++|.|+. .|.-+.+++|....     +. .+...
T Consensus       101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl-~lL~gl~-~G~I~~~v~q~~~lf~~ti~~~ni~~~  177 (305)
T 2v9p_A          101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLC-NSLIHFL-GGSVLSFANHKSHFWLASLADTRAALV  177 (305)
T ss_dssp             HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHH-HHHHHHH-TCEEECGGGTTSGGGGGGGTTCSCEEE
T ss_pred             eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHH-HHHhhhc-CceEEEEecCccccccccHHHHhhccC
Confidence            589999999998 7799999999999999999999999999999 9999987 66655555554321     11 11111


Q ss_pred             eeeccc--------ccccccccCch-HHHHHHhhhhccCCCEEEEeCcccHHHHH--HHHHHHHhhcCCEEEEEEechhH
Q 023563          126 VTHDGV--------KLPCCALTTLS-SFRQKFGSDAYDQVDVIGIDEAQFFEDLY--DFCREAADHDGKTVIVAGLDGDY  194 (280)
Q Consensus       126 ~~~~~~--------~~~~~~~~~l~-~~~~~~a~aL~~~p~lLlLDEP~~~~~i~--~~l~~l~~~~g~tviivtHdl~~  194 (280)
                      ......        +...+....++ ..+++ ||+++.+|++||    |+..|..  +.+.    .       +||++..
T Consensus       178 ~~~~~~~~~~i~~~L~~gldg~~LSgGqkQR-ARAll~~p~iLl----Ts~LD~~~~~~i~----~-------ltH~~~~  241 (305)
T 2v9p_A          178 DDATHACWRYFDTYLRNALDGYPVSIDRKHK-AAVQIKAPPLLV----TSNIDVQAEDRYL----Y-------LHSRVQT  241 (305)
T ss_dssp             EEECHHHHHHHHHTTTGGGGTCCEECCCSSC-CCCEECCCCEEE----EESSCSTTCGGGG----G-------GTTTEEE
T ss_pred             ccccHHHHHHHHHHhHccCCccCcCHHHHHH-HHHHhCCCCEEE----ECCCCHHHHHHHH----H-------HhCCHHH
Confidence            000000        00000001111 11122 889999999999    6555421  0111    1       2888876


Q ss_pred             hhhccCCccccccccceEEEeec-eeccccCccee
Q 023563          195 LRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF  228 (280)
Q Consensus       195 ~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~  228 (280)
                      +.           +||+| +|++ ++++.|+++++
T Consensus       242 ~~-----------~aD~i-vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          242 FR-----------FEQPC-TDESGEQPFNITDADW  264 (305)
T ss_dssp             EE-----------CCCCC-CCC---CCCCCCHHHH
T ss_pred             HH-----------hCCEE-EEeCCEEEEeCCHHHH
Confidence            53           89999 9999 99999998876

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.60  E-value=1.9e-15  Score=127.77  Aligned_cols=120  Identities=16%  Similarity=0.121  Sum_probs=69.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEecCCcccccccceeeeeccc---cccc--------c--cccCchH
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVIKSNKDTRYGLDSIVTHDGV---KLPC--------C--ALTTLSS  143 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~~~~~~~~~~~~~v~~~~~~---~~~~--------~--~~~~l~~  143 (280)
                      +++|+||||||||||+ ++|+|+.   +.|........ ...+..++++++....   ....        .  ....++.
T Consensus         2 ~i~l~G~nGsGKTTLl-~~l~g~l~i~~~g~~~~~~~~-~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSg   79 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLV-KKIVERLGKRAIGFWTEEVRD-PETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY   79 (178)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHHHGGGEEEEEEEEEC-------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHHHhCCcCCCEEhhhhcc-ccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCH
Confidence            6899999999999999 9998863   22222211100 0112223333332100   0000        0  0112332


Q ss_pred             HHH---HHhhh-----hccCCCEEEEeC--cccHHH--HHHHHHHHHhhcCCEEEEEEe---chhHhhhccCCccccccc
Q 023563          144 FRQ---KFGSD-----AYDQVDVIGIDE--AQFFED--LYDFCREAADHDGKTVIVAGL---DGDYLRRSFGSVIDIIPL  208 (280)
Q Consensus       144 ~~~---~~a~a-----L~~~p~lLlLDE--P~~~~~--i~~~l~~l~~~~g~tviivtH---dl~~~~~~~~~~~~ll~~  208 (280)
                      -..   ..+++     ++.+|++|||||  |++..+  ..+.+.++.++.+.|+|+++|   |.+++.+          +
T Consensus        80 G~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~----------i  149 (178)
T 1ye8_A           80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE----------I  149 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHH----------H
T ss_pred             HHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHH----------H
Confidence            222   22675     899999999999  977653  445555555555787888885   8888876          8


Q ss_pred             cce
Q 023563          209 ADS  211 (280)
Q Consensus       209 aD~  211 (280)
                      ||+
T Consensus       150 ~~r  152 (178)
T 1ye8_A          150 RRL  152 (178)
T ss_dssp             HTC
T ss_pred             Hhc
Confidence            887

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.59  E-value=1.8e-15  Score=141.39  Aligned_cols=145  Identities=20%  Similarity=0.234  Sum_probs=92.2

Q ss_pred             EeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCccc------------ccccceeeeecc-ccc-
Q 023563           69 SEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDT------------RYGLDSIVTHDG-VKL-  133 (280)
Q Consensus        69 ~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~------------~~~~~~v~~~~~-~~~-  133 (280)
                      ..+||++++|++++|+||||||||||+ +.|+|+. ..+..+.+...+...            +..+..+++... ... 
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll-~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~  226 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSL-GKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  226 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHH-HHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence            578999999999999999999999999 8898873 345666555433210            123334443222 100 


Q ss_pred             -----------------ccccccC-----------chHHHHHHhhhhccCCC--EEEEeCcccHHHHHHHHHHHHhhcCC
Q 023563          134 -----------------PCCALTT-----------LSSFRQKFGSDAYDQVD--VIGIDEAQFFEDLYDFCREAADHDGK  183 (280)
Q Consensus       134 -----------------~~~~~~~-----------l~~~~~~~a~aL~~~p~--lLlLDEP~~~~~i~~~l~~l~~~~g~  183 (280)
                                       ..+...+           ++......+++++.+|+  +|+|| |++.++....++++.++.|.
T Consensus       227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~  305 (359)
T 2og2_A          227 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGI  305 (359)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCC
T ss_pred             hhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCC
Confidence                             0011111           11112222678899999  99999 99998877778888766699


Q ss_pred             EEEEEEechhHhhhccCCccccc-cccceEEEeec
Q 023563          184 TVIVAGLDGDYLRRSFGSVIDII-PLADSVTKLTA  217 (280)
Q Consensus       184 tviivtHdl~~~~~~~~~~~~ll-~~aD~i~~L~~  217 (280)
                      |+|++|| ++...+ .|....+. .+++.|.++..
T Consensus       306 t~iiiTh-lD~~~~-gG~~lsi~~~~~~pI~~ig~  338 (359)
T 2og2_A          306 TGLILTK-LDGSAR-GGCVVSVVEELGIPVKFIGV  338 (359)
T ss_dssp             CEEEEES-CTTCSC-THHHHHHHHHHCCCEEEEEC
T ss_pred             eEEEEec-Cccccc-ccHHHHHHHHhCCCEEEEeC
Confidence            9999999 343321 22222222 25667777765

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.53  E-value=8.6e-17  Score=154.01  Aligned_cols=161  Identities=15%  Similarity=0.132  Sum_probs=100.6

Q ss_pred             ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC-eeEEEecCC---cc--------
Q 023563           51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG-RNVAVIKSN---KD--------  117 (280)
Q Consensus        51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g-~~i~~~~~~---~~--------  117 (280)
                      ++++++++++.|+ +..+|+++ |+|.+|++++|+||||||||||+ ++|+|+.... ..+....+.   ..        
T Consensus       130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl-~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~  207 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLL-GMMARYTRADVIVVGLIGERGREVKDFIENILG  207 (438)
T ss_dssp             CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHH-HHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred             CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHH-HHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence            4789999999997 67899999 99999999999999999999999 9999975322 233333331   00        


Q ss_pred             ---cccccceeeeeccccccccc-cc---------------------CchHHH---HHHhhhhccCCCEEEEeC---ccc
Q 023563          118 ---TRYGLDSIVTHDGVKLPCCA-LT---------------------TLSSFR---QKFGSDAYDQVDVIGIDE---AQF  166 (280)
Q Consensus       118 ---~~~~~~~v~~~~~~~~~~~~-~~---------------------~l~~~~---~~~a~aL~~~p~lLlLDE---P~~  166 (280)
                         .+..+..++|........+. ..                     .+..+.   ++.+.| +.+|++   -+   |..
T Consensus       208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA-l~~p~~---t~glD~~~  283 (438)
T 2dpy_A          208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA-IGEPPA---TKGYPPSV  283 (438)
T ss_dssp             HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH-TTCCCC---SSSCCTTH
T ss_pred             ccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH-hCCCcc---cccCCHHH
Confidence               01122333332111111000 00                     011110   111112 233333   00   133


Q ss_pred             HHHHHHHHHHHHh---hcCC-----EEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          167 FEDLYDFCREAAD---HDGK-----TVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       167 ~~~i~~~l~~l~~---~~g~-----tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +..+.+++.++.+   +.|.     ||+++|||++  ..          +||++++|.+ +++..++++++.
T Consensus       284 ~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~----------iad~v~~l~dG~Ivl~~~~~~~~  343 (438)
T 2dpy_A          284 FAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DP----------IADSARAILDGHIVLSRRLAEAG  343 (438)
T ss_dssp             HHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CH----------HHHHHHHHSSEEEEECHHHHHTT
T ss_pred             HHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--ch----------hhceEEEEeCcEEEEeCCHHHcc
Confidence            4457777777765   2364     9999999999  32          8999999999 999999988765

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.53  E-value=1.3e-15  Score=148.74  Aligned_cols=159  Identities=11%  Similarity=0.026  Sum_probs=93.1

Q ss_pred             cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEE-EecCCccccc--c---cc
Q 023563           52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVA-VIKSNKDTRY--G---LD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~-~~~~~~~~~~--~---~~  123 (280)
                      .+++++++..|++ ..+|   +..|++|++++|+||||||||||+ +.++|... .|..+. +..+......  .   ++
T Consensus       257 ~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl-~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g  332 (525)
T 1tf7_A          257 RSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLV-SRFVENACANKERAILFAYEESRAQLLRNAYSWG  332 (525)
T ss_dssp             CCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHH-HHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTS
T ss_pred             ccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHH-HHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence            4667777665543 1233   458999999999999999999999 88887643 455543 4444332100  0   00


Q ss_pred             eeeeecccccccccc-------cCchH-HHHHHhhhhccCCCEEEEeCcc-----------cHHHHHHHHHHHHhhcCCE
Q 023563          124 SIVTHDGVKLPCCAL-------TTLSS-FRQKFGSDAYDQVDVIGIDEAQ-----------FFEDLYDFCREAADHDGKT  184 (280)
Q Consensus       124 ~v~~~~~~~~~~~~~-------~~l~~-~~~~~a~aL~~~p~lLlLDEP~-----------~~~~i~~~l~~l~~~~g~t  184 (280)
                      .-+.. ......+..       ..... .....++++..+|++||+| |+           .+..++++++.+++. |+|
T Consensus       333 ~~~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~t  409 (525)
T 1tf7_A          333 MDFEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQE-EIT  409 (525)
T ss_dssp             CCHHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             CCHHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhC-CCE
Confidence            00000 000000000       01111 1122266788999999999 93           344567778877765 999


Q ss_pred             EEEEEechhHhhhccCCc-cccccccceEEEeec-e
Q 023563          185 VIVAGLDGDYLRRSFGSV-IDIIPLADSVTKLTA-R  218 (280)
Q Consensus       185 viivtHdl~~~~~~~~~~-~~ll~~aD~i~~L~~-~  218 (280)
                      +|++||+...... +... ..+..+||+|++|+. +
T Consensus       410 vilvsh~~~~~~~-~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          410 GLFTNTSDQFMGA-HSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             EEEEEECSSSSCC-CSSCSSCCTTTCSEEEEEEEEE
T ss_pred             EEEEECcccccCc-ccccCcccceeeeEEEEEEEEE
Confidence            9999999821110 1111 122348999999987 5

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.52  E-value=6.7e-16  Score=134.18  Aligned_cols=38  Identities=24%  Similarity=0.137  Sum_probs=24.9

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      +.-|+||||+|++|++++|+||||||||||+ ++|.|+.
T Consensus        10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl-~~L~g~~   47 (218)
T 1z6g_A           10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLI-KKLLNEF   47 (218)
T ss_dssp             ------------CCCCEEEECSTTSSHHHHH-HHHHHHS
T ss_pred             cccccCCceecCCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence            4569999999999999999999999999999 9999876

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.51  E-value=2.4e-14  Score=131.34  Aligned_cols=56  Identities=13%  Similarity=0.031  Sum_probs=41.6

Q ss_pred             hhhhc----cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceE--EEee
Q 023563          149 GSDAY----DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSV--TKLT  216 (280)
Q Consensus       149 a~aL~----~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i--~~L~  216 (280)
                      |++|+    .+|++||||||++.+      .++++|+++. + |.++|++||+.+.. +          +||++  ++|.
T Consensus       231 a~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~~~~-~----------~~d~~~~v~~~  297 (322)
T 1e69_A          231 ALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNKIVM-E----------AADLLHGVTMV  297 (322)
T ss_dssp             HHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCTTGG-G----------GCSEEEEEEES
T ss_pred             HHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCHHHH-h----------hCceEEEEEEe
Confidence            45565    588999999997654      4777888774 3 89999999997543 3          89987  5554


Q ss_pred             c
Q 023563          217 A  217 (280)
Q Consensus       217 ~  217 (280)
                      +
T Consensus       298 ~  298 (322)
T 1e69_A          298 N  298 (322)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.51  E-value=4.5e-16  Score=144.84  Aligned_cols=163  Identities=15%  Similarity=0.114  Sum_probs=99.4

Q ss_pred             ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe-eEEEecCCcc-ccc-------
Q 023563           51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR-NVAVIKSNKD-TRY-------  120 (280)
Q Consensus        51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~-~i~~~~~~~~-~~~-------  120 (280)
                      ++++.+++++.|+ +..+|+++ |+|.+|++++|+||||||||||+ ++|+|+..... .+.+..+... ...       
T Consensus        44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl-~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~  121 (347)
T 2obl_A           44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLL-GMICNGASADIIVLALIGERGREVNEFLALLPQ  121 (347)
T ss_dssp             CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHH-HHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred             CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHH-HHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence            3689999999998 77899999 99999999999999999999999 99999754332 3333332211 000       


Q ss_pred             -----ccceeeeeccccc----ccccc------------------cCchHHH---HHHhhhhccCCCE-EEEeCcccHHH
Q 023563          121 -----GLDSIVTHDGVKL----PCCAL------------------TTLSSFR---QKFGSDAYDQVDV-IGIDEAQFFED  169 (280)
Q Consensus       121 -----~~~~v~~~~~~~~----~~~~~------------------~~l~~~~---~~~a~aL~~~p~l-LlLDEP~~~~~  169 (280)
                           .+..+.+......    .....                  ..+..+.   ++.+.+ +.+|++ -=+| |..+.+
T Consensus       122 ~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la-l~~p~~t~Gld-p~~~~~  199 (347)
T 2obl_A          122 STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA-SGEPDVRGGFP-PSVFSS  199 (347)
T ss_dssp             HHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH-TTCCCCBTTBC-HHHHHH
T ss_pred             hhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH-cCCCCcccCCC-HHHHHH
Confidence                 0011111000000    00000                  0011110   111112 233333 0000 133445


Q ss_pred             HHHHHHHHHh-hcCC-----EEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          170 LYDFCREAAD-HDGK-----TVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       170 i~~~l~~l~~-~~g~-----tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +.++++++.+ +.|.     ||+++|||++  ..          +||++++|.+ +++..++++++.
T Consensus       200 l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~----------i~d~v~~i~dG~Ivl~~~l~~~~  254 (347)
T 2obl_A          200 LPKLLERAGPAPKGSITAIYTVLLESDNVN--DP----------IGDEVRSILDGHIVLTRELAEEN  254 (347)
T ss_dssp             HHHHHTTCEECSSSEEEEEEEEECCSSCCC--CH----------HHHHHHHHCSEEEEBCHHHHTTT
T ss_pred             HHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Ch----------hhhheEEeeCcEEEEeCCHHHcC
Confidence            7777777764 3477     8999999999  32          8999999999 999999988764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.50  E-value=4.1e-14  Score=121.01  Aligned_cols=148  Identities=15%  Similarity=0.091  Sum_probs=85.5

Q ss_pred             eeEeeee-EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccc-ccccceeeeeccc----ccc---ccc
Q 023563           67 LHSEASV-SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDT-RYGLDSIVTHDGV----KLP---CCA  137 (280)
Q Consensus        67 vl~~isl-~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~-~~~~~~v~~~~~~----~~~---~~~  137 (280)
                      .|+++.. -+++|++++|+||||||||||+ +.+++  ..+..+.++...... ...+.......+.    ...   ...
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~-~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLA-LQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFT   84 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHH-HHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEEC
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHH-HHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEe
Confidence            3444444 5899999999999999999999 77777  456677777544311 0000000000000    000   001


Q ss_pred             ccCchHHHHH--HhhhhccC-CCEEEEeCcccH-----------HH---HHHHHHHHHhhcCCEEEEEEechhHhhh-cc
Q 023563          138 LTTLSSFRQK--FGSDAYDQ-VDVIGIDEAQFF-----------ED---LYDFCREAADHDGKTVIVAGLDGDYLRR-SF  199 (280)
Q Consensus       138 ~~~l~~~~~~--~a~aL~~~-p~lLlLDEP~~~-----------~~---i~~~l~~l~~~~g~tviivtHdl~~~~~-~~  199 (280)
                      ..+.......  .+++++.+ |++|++|||++.           .+   +++.|++++++.|.+||+++|....... .+
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~  164 (220)
T 2cvh_A           85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT  164 (220)
T ss_dssp             CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred             cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence            1122222222  24566665 999999999543           22   4555788877779999999998763210 00


Q ss_pred             CC--ccccccccceEEEeec
Q 023563          200 GS--VIDIIPLADSVTKLTA  217 (280)
Q Consensus       200 ~~--~~~ll~~aD~i~~L~~  217 (280)
                      .+  ...+..+||.+++|+.
T Consensus       165 ~p~~~~~~~~~~d~vi~l~~  184 (220)
T 2cvh_A          165 KPVAEQTLGYRCKDILRLDK  184 (220)
T ss_dssp             CSCCCHHHHHTSSEEEEEEE
T ss_pred             ccCCCcceeecCcEEEEEEE
Confidence            00  0012348999999987

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.49  E-value=1.2e-14  Score=144.41  Aligned_cols=174  Identities=11%  Similarity=0.006  Sum_probs=93.6

Q ss_pred             cEEEcCceEEeCC--eeeeEee----------eeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEE
Q 023563           52 MVSPRPPLFSLQN--RNLHSEA----------SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVA  110 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~i----------sl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~  110 (280)
                      ++.++|+++.|++  +++|+.+          +|+++.   ++|+||||||||||+ ++|.|+..         .|..+.
T Consensus        10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL-~~I~Gl~~P~~sG~vt~~g~~i~   85 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVL-EALSGVALPRGSGIVTRCPLVLK   85 (608)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHH-HHHHSCC-------CCCSCEEEE
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHH-HHHhCCCCCCCCCeEEEcCEEEE
Confidence            5889999999975  3355444          477775   999999999999999 99999842         233432


Q ss_pred             EecCC--cccccccceeeeecccccccccccCchHHHHHHh--------------hhhccCCCEEEEeCc------cc--
Q 023563          111 VIKSN--KDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFG--------------SDAYDQVDVIGIDEA------QF--  166 (280)
Q Consensus       111 ~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a--------------~aL~~~p~lLlLDEP------~~--  166 (280)
                      .....  ...+..+++++|............++.......+              .+....|+++|+|||      ++  
T Consensus        86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~L  165 (608)
T 3szr_A           86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQ  165 (608)
T ss_dssp             EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCS
T ss_pred             EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCC
Confidence            22211  2233344555554332222222223332222221              123457999999999      54  


Q ss_pred             ----HHHHHHHHHHHH-hhcCCEEEEEEechhHhhhccCCccccc--cccceEEEeec-eeccccCcceee
Q 023563          167 ----FEDLYDFCREAA-DHDGKTVIVAGLDGDYLRRSFGSVIDII--PLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       167 ----~~~i~~~l~~l~-~~~g~tviivtHdl~~~~~~~~~~~~ll--~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                          ...+.++++++. +..+.++++++||++.+.+..-.+.+.+  .-...|.++.. ..+..|+.+++.
T Consensus       166 D~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~  236 (608)
T 3szr_A          166 PADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVV  236 (608)
T ss_dssp             SCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHH
Confidence                346888888864 3458899999999986643100011111  11345788887 777778766554

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.48  E-value=1.2e-15  Score=144.96  Aligned_cols=136  Identities=10%  Similarity=0.027  Sum_probs=83.1

Q ss_pred             eeeeEeeeeEeeCce--------------------EEEEEcCCCCcHHHHHHHHHhcch--------hCCeeE---EEec
Q 023563           65 RNLHSEASVSSPSGE--------------------IHVIVGPMFAGKTTTLLRRIQAET--------QKGRNV---AVIK  113 (280)
Q Consensus        65 ~~vl~~isl~i~~Ge--------------------i~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i---~~~~  113 (280)
                      +.+|++|||+|++|+                    +++|+||||||||||+ ++|.|+.        ..+.++   +++.
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLl-n~L~Gl~~p~~GsI~~~g~~~t~~~~v~  114 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFI-NTLRGIGNEEEGAAKTGVVEVTMERHPY  114 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHH-HHHHTCCTTSTTSCCCCC----CCCEEE
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHH-HHHhCCCCccCceEEECCeecceeEEec
Confidence            468999999999999                    9999999999999999 9999962        223222   2333


Q ss_pred             CCcccccccceeeeeccc------ccccccccCc--------------hHHHHHHhhhhcc----------CCCEEEEeC
Q 023563          114 SNKDTRYGLDSIVTHDGV------KLPCCALTTL--------------SSFRQKFGSDAYD----------QVDVIGIDE  163 (280)
Q Consensus       114 ~~~~~~~~~~~v~~~~~~------~~~~~~~~~l--------------~~~~~~~a~aL~~----------~p~lLlLDE  163 (280)
                      +.... ..+ .+....+.      ....+...++              ....-..+++|+.          +|+++++||
T Consensus       115 q~~~~-~~l-tv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDE  192 (413)
T 1tq4_A          115 KHPNI-PNV-VFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNE  192 (413)
T ss_dssp             ECSSC-TTE-EEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred             ccccc-CCe-eehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCc
Confidence            32110 000 11110000      0000111111              1111223567777          999999999


Q ss_pred             ccc------HHHHHHHHHHHHh----hc----CCEEEEEEechhH--hhhccCCccccccccceEE
Q 023563          164 AQF------FEDLYDFCREAAD----HD----GKTVIVAGLDGDY--LRRSFGSVIDIIPLADSVT  213 (280)
Q Consensus       164 P~~------~~~i~~~l~~l~~----~~----g~tviivtHdl~~--~~~~~~~~~~ll~~aD~i~  213 (280)
                      |++      +.++++.++++..    +.    ..+|++++|+++.  +.+          +||+|.
T Consensus       193 PtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~----------L~d~I~  248 (413)
T 1tq4_A          193 ADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPV----------LMDKLI  248 (413)
T ss_dssp             HTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHH----------HHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHH----------HHHHHH
Confidence            965      4457888888752    22    3678899999887  665          677764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.45  E-value=4.2e-14  Score=132.58  Aligned_cols=127  Identities=15%  Similarity=0.135  Sum_probs=83.7

Q ss_pred             eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C-CeeEEEecCCccc--ccccceeeeecccccccccccCch
Q 023563           67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K-GRNVAVIKSNKDT--RYGLDSIVTHDGVKLPCCALTTLS  142 (280)
Q Consensus        67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~-g~~i~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~l~  142 (280)
                      +|++++  +++|++++|+||||||||||+ +.|.|+.. . ...+.........  +..+..+.|..-.       .+..
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll-~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g-------~~~~  196 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTI-ASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVG-------EDTK  196 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHH-HHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBT-------TTBS
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHH-HHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecC-------CCHH
Confidence            566655  899999999999999999999 99998743 2 4555444432211  2223333332100       0112


Q ss_pred             HHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          143 SFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       143 ~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                      .+....+.+|..+|++|++|||+....+...++.. . .|.+|+.++|+.+ +.+          .+||++.|.
T Consensus       197 ~~~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~-~-~g~~vi~t~H~~~-~~~----------~~~rl~~l~  257 (372)
T 2ewv_A          197 SFADALRAALREDPDVIFVGEMRDLETVETALRAA-E-TGHLVFGTLHTNT-AID----------TIHRIVDIF  257 (372)
T ss_dssp             CSHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH-T-TTCEEEECCCCCS-HHH----------HHHHHHHTS
T ss_pred             HHHHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHH-h-cCCEEEEEECcch-HHH----------HHHHHHHhc
Confidence            23445567888999999999998666666656543 4 3999999999977 443          677776553

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.44  E-value=4.1e-13  Score=124.01  Aligned_cols=57  Identities=16%  Similarity=0.184  Sum_probs=46.0

Q ss_pred             hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +++++.+|++||||||++.+      .++++|+++.++ |.+||++|||.+.. +          +||+++.|..
T Consensus       266 a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~~~-~----------~~d~~~~l~~  328 (339)
T 3qkt_A          266 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELK-D----------AADHVIRISL  328 (339)
T ss_dssp             HHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGG-G----------GCSEEEEEEE
T ss_pred             HHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHHHH-H----------hCCEEEEEEe
Confidence            35677899999999997654      477888888765 89999999996643 3          8999999864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.41  E-value=2.4e-13  Score=119.67  Aligned_cols=54  Identities=17%  Similarity=0.103  Sum_probs=30.9

Q ss_pred             EeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCC
Q 023563           61 SLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSN  115 (280)
Q Consensus        61 ~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~  115 (280)
                      +-+++.+|+|+||++++|+++||+||||||||||+ ++|.|+.-      ..+.+.++++.
T Consensus         8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~-k~L~~~lG~~~~~~~~~~i~~v~~d   67 (245)
T 2jeo_A            8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVC-EKIMELLGQNEVEQRQRKVVILSQD   67 (245)
T ss_dssp             ---------------CCSEEEEEECSTTSSHHHHH-HHHHHHHTGGGSCGGGCSEEEEEGG
T ss_pred             cCCCceeecceeccCCCCEEEEEECCCCCCHHHHH-HHHHHHhchhcccccCCceEEEeCC
Confidence            34667899999999999999999999999999999 88887531      13456666654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.38  E-value=8.4e-13  Score=118.19  Aligned_cols=121  Identities=13%  Similarity=0.093  Sum_probs=69.1

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhC-----------CeeEEEecCCccccc---c---cceeeee-------cc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-----------GRNVAVIKSNKDTRY---G---LDSIVTH-------DG  130 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-----------g~~i~~~~~~~~~~~---~---~~~v~~~-------~~  130 (280)
                      +++|++++|+||||||||||+ +.+++....           +..+.|+........   .   ++..++.       +.
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~-~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~  105 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLA-LQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG  105 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHH-HHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHH-HHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence            789999999999999999999 666654333           245555543321100   0   0000000       00


Q ss_pred             cc-cccc--cccCchHHHHHHhhhhccCCCEEEEeCccc--------H---HHHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          131 VK-LPCC--ALTTLSSFRQKFGSDAYDQVDVIGIDEAQF--------F---EDLYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       131 ~~-~~~~--~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~--------~---~~i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      .. .+..  ....++.-.....++++.+|++|++|||+.        .   ..++..|++++++.|+|||+++|+.....
T Consensus       106 l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~  185 (279)
T 1nlf_A          106 LLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA  185 (279)
T ss_dssp             EEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred             eEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence            00 0000  001111111222457788999999999965        1   35777888887666999999999988663

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.38  E-value=1.7e-12  Score=120.69  Aligned_cols=129  Identities=12%  Similarity=0.031  Sum_probs=72.9

Q ss_pred             eeEee-eeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----C---CeeEEEecCCccc-ccccceeeeeccccc----
Q 023563           67 LHSEA-SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----K---GRNVAVIKSNKDT-RYGLDSIVTHDGVKL----  133 (280)
Q Consensus        67 vl~~i-sl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~---g~~i~~~~~~~~~-~~~~~~v~~~~~~~~----  133 (280)
                      .|+.+ ++.|++|++++|+||||||||||+ +.+++...    .   +..+.|+...... +..+..+.+......    
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~-~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~  197 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL  197 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHH-HHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence            45555 689999999999999999999999 87877531    1   2454455432211 111222222111100    


Q ss_pred             ccccc---cCchHHHHH--Hhhhhc-------cCCCEEEEeCcccHH------------------HHHHHHHHHHhhcCC
Q 023563          134 PCCAL---TTLSSFRQK--FGSDAY-------DQVDVIGIDEAQFFE------------------DLYDFCREAADHDGK  183 (280)
Q Consensus       134 ~~~~~---~~l~~~~~~--~a~aL~-------~~p~lLlLDEP~~~~------------------~i~~~l~~l~~~~g~  183 (280)
                      ..+..   .+.......  .+++++       .+|++||+|||++..                  +++..|.+++++.|+
T Consensus       198 ~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~  277 (349)
T 1pzn_A          198 KHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDI  277 (349)
T ss_dssp             GGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            00000   011111111  133444       689999999995432                  344556677766799


Q ss_pred             EEEEEEechhHhh
Q 023563          184 TVIVAGLDGDYLR  196 (280)
Q Consensus       184 tviivtHdl~~~~  196 (280)
                      |||+++|......
T Consensus       278 tvii~~h~~~~~~  290 (349)
T 1pzn_A          278 AVFVTNQVQARPD  290 (349)
T ss_dssp             EEEEEEECC----
T ss_pred             EEEEEcccccccc
Confidence            9999999987554

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.38  E-value=5.8e-13  Score=121.64  Aligned_cols=116  Identities=16%  Similarity=0.173  Sum_probs=75.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCccc------------ccccceeeeeccccc----------
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDT------------RYGLDSIVTHDGVKL----------  133 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~------------~~~~~~v~~~~~~~~----------  133 (280)
                      +|++++|+||||||||||+ +.|+|+. ..+..+.+...+...            +..+..++|......          
T Consensus       101 ~g~vi~lvG~nGsGKTTll-~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~  179 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTI-AKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA  179 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHH-HHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHH-HHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence            7899999999999999999 8898873 345666655443210            123444444221100          


Q ss_pred             ------c--cccccC-----------chHHHHHHhhhhccCCC--EEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEech
Q 023563          134 ------P--CCALTT-----------LSSFRQKFGSDAYDQVD--VIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDG  192 (280)
Q Consensus       134 ------~--~~~~~~-----------l~~~~~~~a~aL~~~p~--lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl  192 (280)
                            .  .+...+           +.......+++++.+|+  ++.|| |+++.++++.++++.++.|.|+|++||+.
T Consensus       180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~~~~~~~~~~~t~iivTh~d  258 (304)
T 1rj9_A          180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQAKKFHEAVGLTGVIVTKLD  258 (304)
T ss_dssp             HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred             HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence                  0  001111           11112223678999999  77899 76677888888888876699999999995


Q ss_pred             hH
Q 023563          193 DY  194 (280)
Q Consensus       193 ~~  194 (280)
                      ..
T Consensus       259 ~~  260 (304)
T 1rj9_A          259 GT  260 (304)
T ss_dssp             SS
T ss_pred             cc
Confidence            43

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.38  E-value=1.2e-13  Score=131.41  Aligned_cols=47  Identities=13%  Similarity=0.095  Sum_probs=38.5

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ  104 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~  104 (280)
                      .+|.++||+++|+++.+++|+||+|      +|+||||||||||+ +.+.|...
T Consensus        10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLl-n~L~g~~~   56 (418)
T 2qag_C           10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLI-NSLFLTDL   56 (418)
T ss_dssp             -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHH-HHHTTCCC
T ss_pred             CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHH-HHHhCCCC
Confidence            4799999999999999999999998      99999999999999 99998743

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.37  E-value=1.5e-13  Score=114.90  Aligned_cols=105  Identities=13%  Similarity=0.008  Sum_probs=63.9

Q ss_pred             eeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHh
Q 023563           72 SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFG  149 (280)
Q Consensus        72 sl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a  149 (280)
                      +|++++|+.++|+||||+|||||+ +.+++...  .|..+.++....        +...   ............+.    
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~-~~i~~~~~~~~g~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~----   95 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLA-VATLKAIYEKKGIRGYFFDTKD--------LIFR---LKHLMDEGKDTKFL----   95 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHH-HHHHHHHHHHSCCCCCEEEHHH--------HHHH---HHHHHHHTCCSHHH----
T ss_pred             hccccCCCEEEEECCCCCCHHHHH-HHHHHHHHHHcCCeEEEEEHHH--------HHHH---HHHHhcCchHHHHH----
Confidence            466788999999999999999999 88888642  343333221100        0000   00000000111222    


Q ss_pred             hhhccCCCEEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEechhH
Q 023563          150 SDAYDQVDVIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLDGDY  194 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHdl~~  194 (280)
                       ..+.+|++|+||||..       ...+.+++.+..++ |+++|++||....
T Consensus        96 -~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~-~~~ii~tsn~~~~  145 (180)
T 3ec2_A           96 -KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNN-LKSTIITTNYSLQ  145 (180)
T ss_dssp             -HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHT-TCEEEEECCCCSC
T ss_pred             -HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHc-CCCEEEEcCCChh
Confidence             2245899999999952       23466777776655 9999999997643

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.36  E-value=3.1e-14  Score=130.59  Aligned_cols=139  Identities=12%  Similarity=0.048  Sum_probs=84.6

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeE-----------------------eeCceEEEEEcCCCCcHHHHHHHHHhcchhC--
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVS-----------------------SPSGEIHVIVGPMFAGKTTTLLRRIQAETQK--  105 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~-----------------------i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~--  105 (280)
                      ..|++++|++.|+  ++++++++.                       +++|+++||+||||||||||+ ++|.|+...  
T Consensus        42 ~~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~-~~L~gll~~~~  118 (312)
T 3aez_A           42 EQIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTA-RVLQALLARWD  118 (312)
T ss_dssp             CCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHH-HHHHHHHHTST
T ss_pred             CeEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHH-HHHHhhccccC
Confidence            3699999999995  567777764                       899999999999999999999 999997542  


Q ss_pred             C-eeEEEecCCcccccccceeeeeccc-----ccccccccCchHHHHHH----------------------hhhhccCCC
Q 023563          106 G-RNVAVIKSNKDTRYGLDSIVTHDGV-----KLPCCALTTLSSFRQKF----------------------GSDAYDQVD  157 (280)
Q Consensus       106 g-~~i~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~l~~~~~~~----------------------a~aL~~~p~  157 (280)
                      | ..+++++++......  .+......     .........+.++.+..                      +++++.+|+
T Consensus       119 G~~~v~~v~qd~~~~~~--t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~  196 (312)
T 3aez_A          119 HHPRVDLVTTDGFLYPN--AELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPD  196 (312)
T ss_dssp             TCCCEEEEEGGGGBCCH--HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCS
T ss_pred             CCCeEEEEecCccCCcc--cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCC
Confidence            3 568888776432110  00000000     00000001111111111                      357889999


Q ss_pred             EEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563          158 VIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRR  197 (280)
Q Consensus       158 lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~  197 (280)
                      +||+|||+...+-..  ..+.+..+ ..|+++|+.+...+
T Consensus       197 ilIlDep~~~~d~~~--~~l~~~~D-~~I~V~a~~~~~~~  233 (312)
T 3aez_A          197 ILILEGLNVLQTGPT--LMVSDLFD-FSLYVDARIEDIEQ  233 (312)
T ss_dssp             EEEEECTTTTCCCSS--CCGGGGCS-EEEEEEECHHHHHH
T ss_pred             EEEECCccccCCcch--HHHHHhcC-cEEEEECCHHHHHH
Confidence            999999976642000  12222223 45778888876643

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.35  E-value=8.8e-13  Score=112.48  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      |++++|+||||||||||+ ++|+|+.
T Consensus         1 G~~i~i~G~nG~GKTTll-~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLI-HKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHH-HHHHHHH
T ss_pred             CCEEEEECCCCChHHHHH-HHHHhhc
Confidence            789999999999999999 8888864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.34  E-value=1.4e-13  Score=128.54  Aligned_cols=146  Identities=14%  Similarity=0.028  Sum_probs=93.6

Q ss_pred             EEcCceEE---eCC--eeee---------EeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCcc-
Q 023563           54 SPRPPLFS---LQN--RNLH---------SEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKD-  117 (280)
Q Consensus        54 ~~~~ls~~---y~~--~~vl---------~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~-  117 (280)
                      ++++++++   |+.  ..+|         +++||+|++|++++|+||||||||||+ ++|.|+... .+.+.+-..... 
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll-~~l~~~~~~~~g~I~ie~~~e~~  215 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLM-KALMQEIPFDQRLITIEDVPELF  215 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHH-HHHHTTSCTTSCEEEEESSSCCC
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHH-HHHHhcCCCCceEEEECCccccC
Confidence            67888887   753  3445         999999999999999999999999999 999997543 344433222110 


Q ss_pred             ---cccccceeeeecccccccccccCchHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhH
Q 023563          118 ---TRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDY  194 (280)
Q Consensus       118 ---~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~  194 (280)
                         .+..+..++++...    .....-..+.+-...++..+|+.+++||+... +..+.+..+... ..|++.++|..+ 
T Consensus       216 ~~~~~~~v~~v~~q~~~----~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~-~~~~~l~~l~~g-~~~~l~t~H~~~-  288 (361)
T 2gza_A          216 LPDHPNHVHLFYPSEAK----EEENAPVTAATLLRSCLRMKPTRILLAELRGG-EAYDFINVAASG-HGGSITSCHAGS-  288 (361)
T ss_dssp             CTTCSSEEEEECC--------------CCHHHHHHHHTTSCCSEEEESCCCST-HHHHHHHHHHTT-CCSCEEEEECSS-
T ss_pred             ccccCCEEEEeecCccc----cccccccCHHHHHHHHHhcCCCEEEEcCchHH-HHHHHHHHHhcC-CCeEEEEECCCC-
Confidence               11112222201110    00001112333344567789999999999764 456677777653 457899999977 


Q ss_pred             hhhccCCccccccccceEEEeec
Q 023563          195 LRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       195 ~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +..          .+||+..+..
T Consensus       289 ~~~----------~~~Rl~~l~~  301 (361)
T 2gza_A          289 CEL----------TFERLALMVL  301 (361)
T ss_dssp             HHH----------HHHHHHHHHT
T ss_pred             HHH----------HHHHHHHHHh
Confidence            443          7899888876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.34  E-value=2.3e-12  Score=111.67  Aligned_cols=143  Identities=13%  Similarity=0.084  Sum_probs=72.2

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcc--hh-----CCeeEEEecCCcc--c------ccccceeeee--ccccc-cc
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE--TQ-----KGRNVAVIKSNKD--T------RYGLDSIVTH--DGVKL-PC  135 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl--~~-----~g~~i~~~~~~~~--~------~~~~~~v~~~--~~~~~-~~  135 (280)
                      -|++|++++|+||||||||||+ +.+++.  ..     .+..+.++.....  .      ...++...+.  ++... ..
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~-~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   98 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA   98 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHH-HHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCcCCeEEEEECCCCCcHHHHH-HHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence            3899999999999999999999 777772  21     1445555543321  0      0001111100  00000 00


Q ss_pred             ccccCchHHHHHHhhhh-ccCCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          136 CALTTLSSFRQKFGSDA-YDQVDVIGIDEAQFF------------------EDLYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       136 ~~~~~l~~~~~~~a~aL-~~~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      ................+ ..+|++|++|||+..                  ..++..|.+++++.|+|||+++|......
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~  178 (243)
T 1n0w_A           99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD  178 (243)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred             CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence            00011111111111111 258999999999432                  13455566676667999999999877654


Q ss_pred             h--ccC-------CccccccccceEEEeec
Q 023563          197 R--SFG-------SVIDIIPLADSVTKLTA  217 (280)
Q Consensus       197 ~--~~~-------~~~~ll~~aD~i~~L~~  217 (280)
                      .  .|.       .-..+-.+||.+++|+.
T Consensus       179 ~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~  208 (243)
T 1n0w_A          179 GAAMFAADPKKPIGGNIIAHASTTRLYLRK  208 (243)
T ss_dssp             ------------------CCTTCEEEEEEE
T ss_pred             CccccCCCcccCCccChhhhcCcEEEEEEE
Confidence            3  120       00113448999999986

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.34  E-value=3.6e-13  Score=117.41  Aligned_cols=119  Identities=10%  Similarity=0.042  Sum_probs=65.9

Q ss_pred             eEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---CeeEEEecCC--cccccccceeeeeccccc---------ccccc
Q 023563           73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---GRNVAVIKSN--KDTRYGLDSIVTHDGVKL---------PCCAL  138 (280)
Q Consensus        73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---g~~i~~~~~~--~~~~~~~~~v~~~~~~~~---------~~~~~  138 (280)
                      -..++|++++|+||||||||||+ ++|.|+...   ...+.+....  ...+.++.++++......         +.+..
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLl-k~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~   89 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLI-QALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV   89 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHH-HHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred             ccCCCCcEEEEECCCCCCHHHHH-HHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence            45799999999999999999999 999886431   1222222211  112334556665322111         11111


Q ss_pred             cC-chHHHHHHhhhhccCCCEEEEe-CcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563          139 TT-LSSFRQKFGSDAYDQVDVIGID-EAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRR  197 (280)
Q Consensus       139 ~~-l~~~~~~~a~aL~~~p~lLlLD-EP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~  197 (280)
                      .+ ..........+++..++++||| .|.....+++.+.    + +++|+++||+++++.+
T Consensus        90 ~~~~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~----~-~~tI~i~th~~~~l~~  145 (219)
T 1s96_A           90 FGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMP----H-ARSIFILPPSKIELDR  145 (219)
T ss_dssp             TTEEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCT----T-CEEEEEECSSHHHHHH
T ss_pred             HhccCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHcc----C-CEEEEEECCCHHHHHH
Confidence            11 0000011123456678999999 2233334444433    4 8999999999998763

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.34  E-value=2.1e-12  Score=105.85  Aligned_cols=83  Identities=20%  Similarity=0.265  Sum_probs=59.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ  155 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~  155 (280)
                      +|+.++|+||||||||||+ +++++... .|.++.++......        ..                      +++.+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~-~~i~~~~~~~g~~~~~~~~~~~~--------~~----------------------~~~~~   83 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLL-QAWVAQALEAGKNAAYIDAASMP--------LT----------------------DAAFE   83 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHH-HHHHHHHHTTTCCEEEEETTTSC--------CC----------------------GGGGG
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCcEEEEcHHHhh--------HH----------------------HHHhC
Confidence            8999999999999999999 99988643 33334333321100        00                      23458


Q ss_pred             CCEEEEeCccc-----HHHHHHHHHHHHhhcCCE-EEEEEec
Q 023563          156 VDVIGIDEAQF-----FEDLYDFCREAADHDGKT-VIVAGLD  191 (280)
Q Consensus       156 p~lLlLDEP~~-----~~~i~~~l~~l~~~~g~t-viivtHd  191 (280)
                      |++|++|||+.     +..+++++.++.++ |++ +|++||.
T Consensus        84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~-g~~~iiits~~  124 (149)
T 2kjq_A           84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNS-GKGFLLLGSEY  124 (149)
T ss_dssp             CSEEEEESTTCCCSHHHHHHHHHHHHHHHH-TCCEEEEEESS
T ss_pred             CCEEEEeCccccChHHHHHHHHHHHHHHHc-CCcEEEEECCC
Confidence            99999999943     34578888888776 888 8888884

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.31  E-value=2.5e-13  Score=129.23  Aligned_cols=53  Identities=17%  Similarity=0.127  Sum_probs=42.0

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceE--EEEEcCCCCcHHHHHHHHHhcchhCCe
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEI--HVIVGPMFAGKTTTLLRRIQAETQKGR  107 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei--~~liGpNGsGKSTLl~~~l~gl~~~g~  107 (280)
                      .+++++ +++|++.+ |+++||+|++|++  ++|+||||||||||+ ++|.|+.+.|.
T Consensus        16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLl-n~L~G~~l~g~   70 (427)
T 2qag_B           16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLM-DTLFNTKFEGE   70 (427)
T ss_dssp             -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHH-HHHHTSCC---
T ss_pred             eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHH-HHHhCccccCC
Confidence            477888 99999887 9999999999999  999999999999999 99999855443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.26  E-value=8.8e-14  Score=115.47  Aligned_cols=51  Identities=14%  Similarity=0.132  Sum_probs=45.6

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ  104 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~  104 (280)
                      ++.+++++.|+++.+++++||+|++|++++|+||||||||||+ ++|+|+..
T Consensus         8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLl-r~l~g~l~   58 (158)
T 1htw_A            8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLT-RGMLQGIG   58 (158)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHH-HHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHH-HHHHHhCC
Confidence            4456678899888899999999999999999999999999999 99999653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.25  E-value=8.5e-12  Score=113.54  Aligned_cols=40  Identities=13%  Similarity=0.153  Sum_probs=21.8

Q ss_pred             cCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           56 RPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        56 ~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +||+++|+++.++++++|+|      +|+||||||||||+ +.|.|.
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl-~~L~g~   41 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLI-NSLFLT   41 (301)
T ss_dssp             ----------------CEEE------EEEEETTSSHHHHH-HHHHC-
T ss_pred             CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHH-HHHhCC
Confidence            57999999999999999999      99999999999999 888775

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.23  E-value=5.2e-11  Score=103.18  Aligned_cols=148  Identities=14%  Similarity=0.059  Sum_probs=82.7

Q ss_pred             eEee-eeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccc------cccceeeeec----ccc----
Q 023563           68 HSEA-SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTR------YGLDSIVTHD----GVK----  132 (280)
Q Consensus        68 l~~i-sl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~------~~~~~v~~~~----~~~----  132 (280)
                      |+.+ .--+++|++++|+||||||||||+++++.+....+..+.|+.......      ..++..++..    ...    
T Consensus        12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~   91 (247)
T 2dr3_A           12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDA   91 (247)
T ss_dssp             HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEEC
T ss_pred             HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEec
Confidence            3444 446899999999999999999997456565555666777765432210      0111111100    000    


Q ss_pred             ----ccc---------ccccCchHHHHHHhhhh-ccCCCEEEEeCcccH--------HHHHHHHHHHHhhcCCEEEEEEe
Q 023563          133 ----LPC---------CALTTLSSFRQKFGSDA-YDQVDVIGIDEAQFF--------EDLYDFCREAADHDGKTVIVAGL  190 (280)
Q Consensus       133 ----~~~---------~~~~~l~~~~~~~a~aL-~~~p~lLlLDEP~~~--------~~i~~~l~~l~~~~g~tviivtH  190 (280)
                          ...         ....++..+..+....+ ..+|+++++|+|+..        .+++..+.+++++.|+|||+++|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h  171 (247)
T 2dr3_A           92 FTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQ  171 (247)
T ss_dssp             STTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             chhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence                000         00112223333332222 158999999999532        23455566666667999999999


Q ss_pred             chhHhhhccCCccccccccceEEEeec
Q 023563          191 DGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       191 dl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ....... +... .+..+||.|+.|+.
T Consensus       172 ~~~~~~~-~~~~-~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          172 VSVGERG-FGGP-GVEHGVDGIIRLDL  196 (247)
T ss_dssp             CC----C-CC-C-CHHHHSSEEEEEEE
T ss_pred             CCCCccc-cccc-ccceeEEEEEEEEE
Confidence            8775321 1100 13457899999987

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.23  E-value=2.1e-11  Score=113.74  Aligned_cols=57  Identities=14%  Similarity=0.055  Sum_probs=44.7

Q ss_pred             cCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|++||||||++.+|      +++.|.++    +.|+|++||+ +.             .||++++|++ +++..|+++
T Consensus       291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~qt~i~~th~-~~-------------~~~~i~~l~~G~i~~~g~~~  352 (359)
T 2o5v_A          291 GEDPVLLLDDFTAELDPHRRQYLLDLAASV----PQAIVTGTEL-AP-------------GAALTLRAQAGRFTPVADEE  352 (359)
T ss_dssp             SSCCEEEECCGGGCCCHHHHHHHHHHHHHS----SEEEEEESSC-CT-------------TCSEEEEEETTEEEECCCTT
T ss_pred             CCCCEEEEeCccccCCHHHHHHHHHHHHhc----CcEEEEEEec-cc-------------cCCEEEEEECCEEEecCCHH
Confidence            7999999999977653      44444443    4689999994 32             5899999999 999999988


Q ss_pred             ee
Q 023563          227 FF  228 (280)
Q Consensus       227 ~~  228 (280)
                      ++
T Consensus       353 ~~  354 (359)
T 2o5v_A          353 MQ  354 (359)
T ss_dssp             TS
T ss_pred             HH
Confidence            76

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.19  E-value=2.6e-11  Score=111.84  Aligned_cols=117  Identities=16%  Similarity=0.097  Sum_probs=73.7

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCccc------------ccccceeeeeccccc-------
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNKDT------------RYGLDSIVTHDGVKL-------  133 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~~~------------~~~~~~v~~~~~~~~-------  133 (280)
                      ..++|++++|+||||||||||+ +.|+|+ ...+..+.+...+...            +.++..+.+......       
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll-~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~  203 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTI-AKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA  203 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHH-HHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence            4478999999999999999999 888886 3456666655433210            111112222111000       


Q ss_pred             ---------c--ccccc-------CchHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEech
Q 023563          134 ---------P--CCALT-------TLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDG  192 (280)
Q Consensus       134 ---------~--~~~~~-------~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl  192 (280)
                               .  .+...       .+..-+...++++..++.+++||.++. .++++.++.+.++.+.|+|++||.-
T Consensus       204 l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~~~~~~~~~~it~iilTKlD  279 (328)
T 3e70_C          204 IQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQARQFNEAVKIDGIILTKLD  279 (328)
T ss_dssp             HHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred             HHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence                     0  00001       111222334577888999999996655 5778888888877799999999953

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.18  E-value=3.1e-11  Score=116.65  Aligned_cols=127  Identities=18%  Similarity=0.148  Sum_probs=79.1

Q ss_pred             eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCcc------------cccccceeeeecccccc
Q 023563           68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKD------------TRYGLDSIVTHDGVKLP  134 (280)
Q Consensus        68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~------------~~~~~~~v~~~~~~~~~  134 (280)
                      -+++||++++|++++|+||||||||||+ +.|+|+. ..+..+.+...+..            .+..+.++++.......
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl-~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~  361 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTI-GKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA  361 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHH-HHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence            4689999999999999999999999999 8898874 45667766533221            12334455543221100


Q ss_pred             c------------------ccccCc----hHHHH---HH---hhhh-ccCC-CEEEEeCcccHHHHHHHHHHHHhhcCCE
Q 023563          135 C------------------CALTTL----SSFRQ---KF---GSDA-YDQV-DVIGIDEAQFFEDLYDFCREAADHDGKT  184 (280)
Q Consensus       135 ~------------------~~~~~l----~~~~~---~~---a~aL-~~~p-~lLlLDEP~~~~~i~~~l~~l~~~~g~t  184 (280)
                      .                  +...+.    ..+..   ++   ++++ ...| ++||...++.+.+.++.++.+.+..|.|
T Consensus       362 ~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~it  441 (503)
T 2yhs_A          362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLT  441 (503)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCC
Confidence            0                  000111    11111   11   2222 3346 4565666888888778888888767999


Q ss_pred             EEEEEechhHhh
Q 023563          185 VIVAGLDGDYLR  196 (280)
Q Consensus       185 viivtHdl~~~~  196 (280)
                      .+++|| ++...
T Consensus       442 gvIlTK-LD~ta  452 (503)
T 2yhs_A          442 GITLTK-LDGTA  452 (503)
T ss_dssp             EEEEEC-GGGCS
T ss_pred             EEEEEc-CCCcc
Confidence            999999 55543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.17  E-value=9.2e-11  Score=110.91  Aligned_cols=141  Identities=11%  Similarity=0.102  Sum_probs=75.8

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHH--hcchh-----CCeeEEEecCCcccc--------cccceeeee--cccccccc
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRI--QAETQ-----KGRNVAVIKSNKDTR--------YGLDSIVTH--DGVKLPCC  136 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l--~gl~~-----~g~~i~~~~~~~~~~--------~~~~~v~~~--~~~~~~~~  136 (280)
                      -|++|+++.|+||||||||||+ +.+  .+...     .+..+.|+.......        ..++..++.  ++...  .
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl-~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~--~  250 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAY--A  250 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEE--E
T ss_pred             CcCCCcEEEEEcCCCCChHHHH-HHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEE--e
Confidence            4899999999999999999999 633  34321     234455554332110        001111100  00000  0


Q ss_pred             cccCchHHHHHHh--hh--hccCCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCEEEEEEechhH
Q 023563          137 ALTTLSSFRQKFG--SD--AYDQVDVIGIDEAQFF------------------EDLYDFCREAADHDGKTVIVAGLDGDY  194 (280)
Q Consensus       137 ~~~~l~~~~~~~a--~a--L~~~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~tviivtHdl~~  194 (280)
                      ...+.........  .+  ...+|++|++|||+..                  .++++.|++++++.|+|||+++|....
T Consensus       251 ~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~  330 (400)
T 3lda_A          251 RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQ  330 (400)
T ss_dssp             ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred             ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeeccc
Confidence            0111111111111  11  1258999999999431                  346788888988889999999998432


Q ss_pred             hhh--ccCC-------ccccccccceEEEeec
Q 023563          195 LRR--SFGS-------VIDIIPLADSVTKLTA  217 (280)
Q Consensus       195 ~~~--~~~~-------~~~ll~~aD~i~~L~~  217 (280)
                      ...  +|++       -..|-..+|.+++|+.
T Consensus       331 ~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~  362 (400)
T 3lda_A          331 VDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK  362 (400)
T ss_dssp             -----------------CHHHHHCSEEEEEEE
T ss_pred             CCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence            211  1210       1223346899998877

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.17  E-value=2.9e-12  Score=109.39  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=30.3

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK  116 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~  116 (280)
                      .++|+++||+||||||||||+ ++|.|+...  .+.+++++.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~-~~l~~~~~~--~i~~v~~d~   41 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLA-QALARTLGE--RVALLPMDH   41 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHH-HHHHHHHGG--GEEEEEGGG
T ss_pred             CCCcEEEEEECCCCCCHHHHH-HHHHHHhCC--CeEEEecCc
Confidence            578999999999999999999 999986432  466666654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.12  E-value=1.3e-11  Score=114.81  Aligned_cols=146  Identities=11%  Similarity=0.003  Sum_probs=84.7

Q ss_pred             eEeeeeEeeC--ceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecC---Ccccc------cccceeeeecc
Q 023563           68 HSEASVSSPS--GEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKS---NKDTR------YGLDSIVTHDG  130 (280)
Q Consensus        68 l~~isl~i~~--Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~---~~~~~------~~~~~v~~~~~  130 (280)
                      .+.|+++|.+  |+.++|+||||||||||+ ++|+|+...      |+ + ++.+   .....      ..+..+.+. .
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLl-k~L~gl~~~~~~~e~G~-i-~i~~~~~~~~~~~~~~~~~~I~~~~q~-~  233 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLV-NKLAAVFNTTSAWEYGR-E-FVFEKLGGDEQAMQYSDYPQMALGHQR-Y  233 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHH-HHHHHHTTCEEECCTTH-H-HHHHSSSSCTTSSCTTTHHHHHHHHHH-H
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHH-HHHHHHhCCCcchhhHH-H-HHHhhcCCCcccCChhHHHHHHHHHHH-H
Confidence            5679999999  999999999999999999 999997431      21 1 1110   00000      011111111 0


Q ss_pred             ccc-----ccccccCchH----HHHH---------Hhhhh-ccCCCEEEEeC---cc------------cHHHHHHHHHH
Q 023563          131 VKL-----PCCALTTLSS----FRQK---------FGSDA-YDQVDVIGIDE---AQ------------FFEDLYDFCRE  176 (280)
Q Consensus       131 ~~~-----~~~~~~~l~~----~~~~---------~a~aL-~~~p~lLlLDE---P~------------~~~~i~~~l~~  176 (280)
                      ..+     ..+...+...    ....         .+.++ ..+|++++|||   |.            .+..+.+.|++
T Consensus       234 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~  313 (365)
T 1lw7_A          234 IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK  313 (365)
T ss_dssp             HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred             HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence            000     0011111000    0000         01122 36899999999   63            23457788877


Q ss_pred             HHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceee
Q 023563          177 AADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFT  229 (280)
Q Consensus       177 l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~  229 (280)
                      +.++.|.++++++|. .+..+          +++++..+++ ++..++++++.
T Consensus       314 l~~~~~~~ililde~-~~~~r----------~~~~i~~i~~-~l~~~~~~~~~  354 (365)
T 1lw7_A          314 LLDKYKVPYIEIESP-SYLDR----------YNQVKAVIEK-VLNEEEISELQ  354 (365)
T ss_dssp             HHHGGGCCCEEEECS-SHHHH----------HHHHHHHHHH-HTSCCCCSSCC
T ss_pred             HHHHcCCCEEEeCCC-CHHHH----------HHHHHHHHHH-HhcccchhHhh
Confidence            776568999999986 34443          7888887766 44566777765

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.08  E-value=9e-12  Score=104.64  Aligned_cols=64  Identities=13%  Similarity=0.065  Sum_probs=38.6

Q ss_pred             hccCCCEEEEeC---cccHHHHHHHHHHHHhhcCCEEEEEEec-hhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          152 AYDQVDVIGIDE---AQFFEDLYDFCREAADHDGKTVIVAGLD-GDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       152 L~~~p~lLlLDE---P~~~~~i~~~l~~l~~~~g~tviivtHd-l~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      ++.+|+...+|+   |..... ++.+..+... +.++|.+||. ++.+.+          +||+|+  ++ +++++|+++
T Consensus       115 l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~~~-~~~ii~tsh~~~~~~e~----------~~~~i~--~~g~~~~~~~~~  180 (189)
T 2bdt_A          115 LLRRDALRKKDEQMGERCLEL-VEEFESKGID-ERYFYNTSHLQPTNLND----------IVKNLK--TNPRFIFCMAGD  180 (189)
T ss_dssp             HHHHTTTSCC----CGGGGHH-HHHHHHTTCC-TTSEEECSSSCGGGHHH----------HHHHHH--HCGGGSCC----
T ss_pred             HHHHHHhccccccCCHHHHHH-HHHHhhcCCC-ccEEEeCCCCChhhHHH----------HHHHHh--hCCcEEEeecCC
Confidence            333444334443   233444 6667766544 7899999999 998887          999999  66 999988876


Q ss_pred             eee
Q 023563          227 FFT  229 (280)
Q Consensus       227 ~~~  229 (280)
                      -+-
T Consensus       181 ~~~  183 (189)
T 2bdt_A          181 PLE  183 (189)
T ss_dssp             ---
T ss_pred             chh
Confidence            543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.06  E-value=5.1e-10  Score=103.94  Aligned_cols=146  Identities=19%  Similarity=0.156  Sum_probs=81.0

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc----cceeeeecccccccccccCchHHHHHHh
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG----LDSIVTHDGVKLPCCALTTLSSFRQKFG  149 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~~~~~~~a  149 (280)
                      -+++|+++.|.||+|||||||++.++......|..+.|+.........    ++...+  ....  ........+.. .+
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~--~l~i--~~~~~~e~~l~-~~  131 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTD--SLLV--SQPDTGEQALE-IA  131 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGG--GCEE--ECCSSHHHHHH-HH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHH--HeEE--ecCCCHHHHHH-HH
Confidence            378999999999999999999845555555567777777654321110    010000  0000  00112222222 23


Q ss_pred             hhhc--cCCCEEEEeCcccHH-------------------HHHHHHHHH---HhhcCCEEEEEEechhHhhhccCC----
Q 023563          150 SDAY--DQVDVIGIDEAQFFE-------------------DLYDFCREA---ADHDGKTVIVAGLDGDYLRRSFGS----  201 (280)
Q Consensus       150 ~aL~--~~p~lLlLDEP~~~~-------------------~i~~~l~~l---~~~~g~tviivtHdl~~~~~~~~~----  201 (280)
                      ++++  .+|++|++||++...                   .+.+.++++   +++.|++||+++|........|++    
T Consensus       132 ~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~  211 (349)
T 2zr9_A          132 DMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETT  211 (349)
T ss_dssp             HHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CC
T ss_pred             HHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCccc
Confidence            3444  359999999994311                   234455555   355699999999976644433432    


Q ss_pred             -cc-ccccccceEEEeec-eeccccC
Q 023563          202 -VI-DIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       202 -~~-~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                       .. -|-.+||.++.++. +.+..|+
T Consensus       212 ~gg~~l~~~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          212 TGGKALKFYASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             SSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred             CCchHhhhccceEEEEEEeeeeecCc
Confidence             11 13357998888887 6555554

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.99  E-value=3.5e-11  Score=111.26  Aligned_cols=63  Identities=21%  Similarity=0.180  Sum_probs=54.6

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCC
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSN  115 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~  115 (280)
                      +|+++++++.|+++.+|+++||++.+|++++|+||||||||||+ +.|.|+. ..+.++.+...+
T Consensus        29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl-~~l~g~~~~~~g~v~i~~~d   92 (337)
T 2qm8_A           29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTI-DALGSLLTAAGHKVAVLAVD   92 (337)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEEEC
T ss_pred             HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHH-HHHHHhhhhCCCEEEEEEEc
Confidence            68999999999888899999999999999999999999999999 8888864 346667666543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.98  E-value=3.8e-10  Score=101.20  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcch
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      .++|+||||||||||+ ++|.|+.
T Consensus         4 ~v~lvG~nGaGKSTLl-n~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLV-NTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHH-HHHHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhCCC
Confidence            4789999999999999 9999973

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=98.93  E-value=8.7e-10  Score=90.36  Aligned_cols=57  Identities=18%  Similarity=0.235  Sum_probs=46.8

Q ss_pred             hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +++++.+|++||||||++..      .+.+.|.++.++ |.|||++|||.+ +.+          +||++++|+.
T Consensus        75 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~-~~~----------~~d~ii~l~~  137 (148)
T 1f2t_B           75 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE-LKD----------AADHVIRISL  137 (148)
T ss_dssp             HHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG-GGG----------GCSEEEEEEE
T ss_pred             HHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHH-HHH----------hCCEEEEEEc
Confidence            36788999999999997654      477888887765 899999999995 444          8999999963

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.91  E-value=6.3e-11  Score=105.26  Aligned_cols=50  Identities=16%  Similarity=0.211  Sum_probs=34.5

Q ss_pred             ccEEEcCc-eEEe-CCeeeeEeeeeEeeC---ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           51 SMVSPRPP-LFSL-QNRNLHSEASVSSPS---GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        51 ~~l~~~~l-s~~y-~~~~vl~~isl~i~~---Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+++|+ +++| ++..+|+|+||+|.+   |++++|+|++||||||+. +.|++
T Consensus        16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~-~~La~   70 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVG-KIMAR   70 (250)
T ss_dssp             ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHH-HHHHH
T ss_pred             CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHH-HHHHH
Confidence            48999999 9999 778899999999999   999999999999999999 88876

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.83  E-value=2.2e-09  Score=97.48  Aligned_cols=118  Identities=20%  Similarity=0.198  Sum_probs=64.3

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCcccccccceeeeecccc--cccccccCchHHHHHHhhh
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNKDTRYGLDSIVTHDGVK--LPCCALTTLSSFRQKFGSD  151 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~~~~~~a~a  151 (280)
                      .+|++++|+|||||||||++ ..|++...  .|+++.++..+.. +......+......  .+.....+...+..  +.+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~-~~LA~~l~~~~G~~V~lv~~D~~-r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~--al~  178 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTL-AKLAAISMLEKHKKIAFITTDTY-RIAAVEQLKTYAELLQAPLEVCYTKEEFQQ--AKE  178 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHH-HHHHHHHHHTTCCCEEEEECCCS-STTHHHHHHHHHTTTTCCCCBCSSHHHHHH--HHH
T ss_pred             CCCcEEEEECCCCCCHHHHH-HHHHHHHHHhcCCEEEEEecCcc-cchHHHHHHHHHHhcCCCeEecCCHHHHHH--HHH
Confidence            57999999999999999999 77877643  6778888876542 11110000000000  00000011122222  223


Q ss_pred             hccCCCEEEEeCcc---cHHHHHHHHHHHHh---hcCCEEEE-EEechhHhhh
Q 023563          152 AYDQVDVIGIDEAQ---FFEDLYDFCREAAD---HDGKTVIV-AGLDGDYLRR  197 (280)
Q Consensus       152 L~~~p~lLlLDEP~---~~~~i~~~l~~l~~---~~g~tvii-vtHdl~~~~~  197 (280)
                      .+.+|+++|+|.|-   .....+..+.++..   ..++.+++ ++|+.+.+.+
T Consensus       179 ~~~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~  231 (296)
T 2px0_A          179 LFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKH  231 (296)
T ss_dssp             HGGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHH
T ss_pred             HhcCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHH
Confidence            34899999999881   11233333434432   22334444 4899887765

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.82  E-value=1.9e-09  Score=111.14  Aligned_cols=69  Identities=25%  Similarity=0.313  Sum_probs=60.0

Q ss_pred             hhhhccCCC--EEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563          149 GSDAYDQVD--VIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL-----  215 (280)
Q Consensus       149 a~aL~~~p~--lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L-----  215 (280)
                      |++|+.+|+  +||||||++.      ..++++|++++++ |.|||+||||++++.           .||+|++|     
T Consensus       476 AraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~-G~TvivVtHd~~~~~-----------~aD~ii~lgpgag  543 (916)
T 3pih_A          476 ATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIVVEHDEEVIR-----------NADHIIDIGPGGG  543 (916)
T ss_dssp             HHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT-TCEEEEECCCHHHHH-----------TCSEEEEEESSSG
T ss_pred             HHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-----------hCCEEEEEcCCcc
Confidence            678888777  9999999765      4588999999876 999999999999875           69999999     


Q ss_pred             -ec-eeccccCcceee
Q 023563          216 -TA-RCEFCGKRAFFT  229 (280)
Q Consensus       216 -~~-~i~~~g~~~~~~  229 (280)
                       ++ ++++.|+++++.
T Consensus       544 ~~~G~iv~~G~~~e~~  559 (916)
T 3pih_A          544 TNGGRVVFQGTVDELL  559 (916)
T ss_dssp             GGCSEEEEEECHHHHH
T ss_pred             cCCCEEEEeechhhhh
Confidence             77 999999998875

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.81  E-value=5e-09  Score=100.22  Aligned_cols=153  Identities=16%  Similarity=0.098  Sum_probs=87.1

Q ss_pred             eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCccccc---cc----cee-eee--cc----
Q 023563           66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRY---GL----DSI-VTH--DG----  130 (280)
Q Consensus        66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~---~~----~~v-~~~--~~----  130 (280)
                      ..|+++..-+++|+++.|.|++|+|||||++.+...... .|..+.++........   .+    ..+ .++  .+    
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~  270 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTP  270 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCH
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence            467778778999999999999999999999443333333 4667877764422100   00    000 000  00    


Q ss_pred             -----------------cccccccccCchHHHHHHhhhhc--cCCCEEEEeCccc----------H----HHHHHHHHHH
Q 023563          131 -----------------VKLPCCALTTLSSFRQKFGSDAY--DQVDVIGIDEAQF----------F----EDLYDFCREA  177 (280)
Q Consensus       131 -----------------~~~~~~~~~~l~~~~~~~a~aL~--~~p~lLlLDEP~~----------~----~~i~~~l~~l  177 (280)
                                       ............++.. .++.++  .+|+++++|+++.          +    .++...|+.+
T Consensus       271 ~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~-~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~l  349 (454)
T 2r6a_A          271 EDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRA-KCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKAL  349 (454)
T ss_dssp             HHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHH-HHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHH-HHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence                             0000000012223322 233343  5899999999932          1    2366778888


Q ss_pred             HhhcCCEEEEEEechhHhhhc---------cCCccccccccceEEEeec-ee
Q 023563          178 ADHDGKTVIVAGLDGDYLRRS---------FGSVIDIIPLADSVTKLTA-RC  219 (280)
Q Consensus       178 ~~~~g~tviivtHdl~~~~~~---------~~~~~~ll~~aD~i~~L~~-~i  219 (280)
                      +++.|++||+++|--......         +.+...+...||.|++|.. ..
T Consensus       350 Ake~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          350 ARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             HHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             HHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence            888899999999921110000         0011123347999999987 54

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.80  E-value=7.7e-09  Score=100.65  Aligned_cols=117  Identities=16%  Similarity=0.110  Sum_probs=71.6

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc-cc--eeeeecccccccccccCc
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG-LD--SIVTHDGVKLPCCALTTL  141 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~l  141 (280)
                      ..+++++++.+++|++++|+||||||||||+ ++|.|+......+..+......... ..  .+..+...      ..+-
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~------~~~~  319 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGM------GEGE  319 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCS------SSCC
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeeccc------ccCC
Confidence            3578899999999999999999999999999 9999986554444333322111110 00  01111110      0111


Q ss_pred             hHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEec
Q 023563          142 SSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLD  191 (280)
Q Consensus       142 ~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHd  191 (280)
                      ..+.+....+|-++|+.++++|-...+ ....+..+..  |..++-+-|-
T Consensus       320 ~~~~~~l~~~LR~~PD~iivgEir~~E-~~~~l~a~~t--Gh~~~sT~Ha  366 (511)
T 2oap_1          320 IDMYDLLRAALRQRPDYIIVGEVRGRE-AQTLFQAMST--GHASYSTLHA  366 (511)
T ss_dssp             BCHHHHHHTTGGGCCSEEEESCCCSTH-HHHHHHHHHT--TCEEEEEEEC
T ss_pred             cCHHHHHHHhhccCCCeEEeCCcCHHH-HHHHHHhhcC--CCCccccccc
Confidence            122232334566899999999997664 5556655532  7776655563

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.80  E-value=6.9e-10  Score=93.82  Aligned_cols=48  Identities=17%  Similarity=0.206  Sum_probs=35.4

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      +|+++|+++.|+ ..++++  |++++|..++|+|+||||||||+ +.+.|..
T Consensus         3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl-~~l~g~~   50 (210)
T 1pui_A            3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSAL-NTLTNQK   50 (210)
T ss_dssp             --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHH-TTTCCC-
T ss_pred             chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHH-HHHhCCC
Confidence            589999999997 467887  99999999999999999999999 8888854

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.79  E-value=1.3e-10  Score=105.91  Aligned_cols=59  Identities=25%  Similarity=0.141  Sum_probs=50.0

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEe-------------------eCceEEEEEcCCCCcHHHHHHHHHhcchh---CCee
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSS-------------------PSGEIHVIVGPMFAGKTTTLLRRIQAETQ---KGRN  108 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i-------------------~~Gei~~liGpNGsGKSTLl~~~l~gl~~---~g~~  108 (280)
                      .+|+++||++.|+  ++++++++.+                   .+|+++||+||||||||||+ ++|.|+..   .+..
T Consensus        36 ~~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~-~~L~~~l~~~~~~G~  112 (308)
T 1sq5_A           36 EDLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTA-RVLQALLSRWPEHRR  112 (308)
T ss_dssp             TTCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHH-HHHHHHHTTSTTCCC
T ss_pred             cccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHH-HHHHHHHhhCCCCCe
Confidence            4799999999994  6899999988                   99999999999999999999 99999643   4445


Q ss_pred             EEEe
Q 023563          109 VAVI  112 (280)
Q Consensus       109 i~~~  112 (280)
                      +.++
T Consensus       113 i~vi  116 (308)
T 1sq5_A          113 VELI  116 (308)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5553

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.79  E-value=1.4e-09  Score=94.33  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=22.6

Q ss_pred             eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh-cch
Q 023563           66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ-AET  103 (280)
Q Consensus        66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~-gl~  103 (280)
                      +..+++||++++|++++|+||||||||||+ ++|. |+.
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~-~~L~~~~~   52 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVA-NKLLEKQK   52 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHH-HHHHC---
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHH-HHHHhcCC
Confidence            457899999999999999999999999999 9998 864

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.75  E-value=6.8e-09  Score=107.05  Aligned_cols=69  Identities=19%  Similarity=0.148  Sum_probs=58.9

Q ss_pred             hhhhccC--CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563          149 GSDAYDQ--VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL-----  215 (280)
Q Consensus       149 a~aL~~~--p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L-----  215 (280)
                      |++|+.+  |++||||||++.+      .+++.|+++++. |.|||+|+||++++.           .||+|++|     
T Consensus       516 A~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~-G~TVIvVeHdl~~i~-----------~ADrIi~LgpgaG  583 (972)
T 2r6f_A          516 ATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDEDTML-----------AADYLIDIGPGAG  583 (972)
T ss_dssp             HHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT-TCEEEEECCCHHHHH-----------SCSEEEEECSSSG
T ss_pred             HHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-----------hCCEEEEeCCCcc
Confidence            4468877  5999999997654      588999999765 999999999999875           79999999     


Q ss_pred             -ec-eeccccCcceee
Q 023563          216 -TA-RCEFCGKRAFFT  229 (280)
Q Consensus       216 -~~-~i~~~g~~~~~~  229 (280)
                       ++ ++++.|+++++.
T Consensus       584 ~~gG~iv~~G~~~e~~  599 (972)
T 2r6f_A          584 IHGGEVVAAGTPEEVM  599 (972)
T ss_dssp             GGCCSEEEEECTTTTT
T ss_pred             CCCCEEEEecCHHHHH
Confidence             56 899999998876

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.73  E-value=3.8e-09  Score=89.11  Aligned_cols=31  Identities=26%  Similarity=0.335  Sum_probs=25.4

Q ss_pred             eeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           72 SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        72 sl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      |+++++|++++|+||||||||||+ ++|.|+.
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~-~~L~~~~   31 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLV-RALVKAL   31 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHH-HHHHHHS
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHH-HHHHhhC
Confidence            678899999999999999999999 9998863

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.72  E-value=1e-08  Score=97.46  Aligned_cols=127  Identities=17%  Similarity=0.179  Sum_probs=75.8

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcccccccceeeeecc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRYGLDSIVTHDG  130 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~~~~~v~~~~~  130 (280)
                      .++++++++.|+...+|+++ +. .+|++++|+||||||||||+ ++|.|+.. ....|..........  ...+.+.. 
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL-~allg~l~~~~g~I~~~ed~ie~~--~~~~~q~~-  216 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTL-YAGLQELNSSERNILTVEDPIEFD--IDGIGQTQ-  216 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHH-HHHHHHHCCTTSCEEEEESSCCSC--CSSSEEEE-
T ss_pred             CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEEecccchhc--cCCcceEE-
Confidence            57888999888777789998 64 89999999999999999999 98888643 345565554332111  11111100 


Q ss_pred             cccccccccCchHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEec
Q 023563          131 VKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLD  191 (280)
Q Consensus       131 ~~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHd  191 (280)
                      .    ....+. .+....-.+|-++|+++++.|-.-...+.+.+... . .|..++-.-|.
T Consensus       217 v----~~~~g~-~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~-~-tGhlv~~tlh~  270 (418)
T 1p9r_A          217 V----NPRVDM-TFARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS-L-TGHLVMSTLHT  270 (418)
T ss_dssp             C----BGGGTB-CHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH-H-TTCEEEEEECC
T ss_pred             E----ccccCc-CHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHH-H-hCCCcccccch
Confidence            0    000111 12222223456899999999964443444444332 2 36665444463

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.72  E-value=4.9e-09  Score=101.18  Aligned_cols=36  Identities=19%  Similarity=0.118  Sum_probs=34.1

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ..+|+++||+|++ ++++|+||||||||||+ ++|+|+
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl-~~l~Gl   52 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTM-AGFVTA   52 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHH-HHHhcC
Confidence            4579999999999 99999999999999999 999997

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.71  E-value=1.2e-08  Score=104.42  Aligned_cols=69  Identities=19%  Similarity=0.208  Sum_probs=59.0

Q ss_pred             hhhhccCC--CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563          149 GSDAYDQV--DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL-----  215 (280)
Q Consensus       149 a~aL~~~p--~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L-----  215 (280)
                      |++|+.+|  .+|||||||+.+      .++++|+++++. |.|||+|+||++++.           .||+|++|     
T Consensus       391 A~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~-G~TVIvVeHdl~~l~-----------~aD~ii~lgpgaG  458 (842)
T 2vf7_A          391 ATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG-GNSLFVVEHDLDVIR-----------RADWLVDVGPEAG  458 (842)
T ss_dssp             HHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT-TCEEEEECCCHHHHT-----------TCSEEEEECSSSG
T ss_pred             HHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEcCCHHHHH-----------hCCEEEEeCCCcc
Confidence            45788898  599999997654      588889999875 999999999999764           79999999     


Q ss_pred             -ec-eeccccCcceee
Q 023563          216 -TA-RCEFCGKRAFFT  229 (280)
Q Consensus       216 -~~-~i~~~g~~~~~~  229 (280)
                       ++ ++++.|+++++.
T Consensus       459 ~~~G~iv~~g~~~~~~  474 (842)
T 2vf7_A          459 EKGGEILYSGPPEGLK  474 (842)
T ss_dssp             GGCCSEEEEECGGGGG
T ss_pred             cCCCEEEEecCHHHHH
Confidence             56 899999988875

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.70  E-value=3e-08  Score=90.46  Aligned_cols=108  Identities=17%  Similarity=0.156  Sum_probs=61.7

Q ss_pred             eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCcccccc---cceeeeecccc-cccccccCchHH
Q 023563           70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNKDTRYG---LDSIVTHDGVK-LPCCALTTLSSF  144 (280)
Q Consensus        70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~~~~~~---~~~v~~~~~~~-~~~~~~~~l~~~  144 (280)
                      .++++..+|++++|+|||||||||++ ..|+++ ...|.++.+...+......   +..+....+.. .......+...+
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~-~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v  174 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSC-GKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAV  174 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHH
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHH-HHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHH
Confidence            45677889999999999999999999 777775 3467777766543211000   00000000000 000000111111


Q ss_pred             -HHHHhhhhccCCCEEEEeCcc---cHHHHHHHHHHHH
Q 023563          145 -RQKFGSDAYDQVDVIGIDEAQ---FFEDLYDFCREAA  178 (280)
Q Consensus       145 -~~~~a~aL~~~p~lLlLDEP~---~~~~i~~~l~~l~  178 (280)
                       .+..++++..+|+++|+|||.   ....+++.+.++.
T Consensus       175 ~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~  212 (306)
T 1vma_A          175 AFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVH  212 (306)
T ss_dssp             HHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHH
Confidence             223456678899999999993   3445666665554

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.68  E-value=1.9e-08  Score=91.86  Aligned_cols=41  Identities=12%  Similarity=0.015  Sum_probs=28.4

Q ss_pred             ccCCCEEEEeCccc-----HHHHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563          153 YDQVDVIGIDEAQF-----FEDLYDFCREAADHDGKTVIVAGLDGDYL  195 (280)
Q Consensus       153 ~~~p~lLlLDEP~~-----~~~i~~~l~~l~~~~g~tviivtHdl~~~  195 (280)
                      ..+|+++|+|||+.     +..+++.+.+..  .+.++|++||+.+.+
T Consensus       132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l  177 (354)
T 1sxj_E          132 AHRYKCVIINEANSLTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPI  177 (354)
T ss_dssp             --CCEEEEEECTTSSCHHHHHHHHHHHHHST--TTEEEEEEESCSCSS
T ss_pred             CCCCeEEEEeCccccCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHH
Confidence            56899999999954     234555555543  278999999997644

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.61  E-value=2.1e-07  Score=86.59  Aligned_cols=137  Identities=18%  Similarity=0.059  Sum_probs=76.8

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEecCCcccccc----cceeeeecccccccccccCchHHHHHHh
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVIKSNKDTRYG----LDSIVTHDGVKLPCCALTTLSSFRQKFG  149 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~~~~~~~a  149 (280)
                      +++|+++.|+||+|||||||+ ..++. +...+..+.|+.........    ++...++ .....   .....+.... +
T Consensus        58 i~~G~i~~I~GppGsGKSTLa-l~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~-l~i~~---~~~~e~~l~~-~  131 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLA-LHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKS-LLISQ---PDHGEQALEI-V  131 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHH-HHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGG-CEEEC---CSSHHHHHHH-H
T ss_pred             ccCCcEEEEECCCCCCHHHHH-HHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhh-hhhhh---ccCHHHHHHH-H
Confidence            889999999999999999999 54444 44566777777554322110    1111110 00000   1112222221 1


Q ss_pred             hhh--ccCCCEEEEeCccc-------------------HH---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCc---
Q 023563          150 SDA--YDQVDVIGIDEAQF-------------------FE---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSV---  202 (280)
Q Consensus       150 ~aL--~~~p~lLlLDEP~~-------------------~~---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~---  202 (280)
                      ..+  ...|+++++|+-+.                   ..   +++..|..++++.|++||++.|-..-...+|++-   
T Consensus       132 ~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~  211 (356)
T 3hr8_A          132 DELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETT  211 (356)
T ss_dssp             HHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSC
T ss_pred             HHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccC
Confidence            222  25799999998511                   01   2445566777778999999999743332233211   


Q ss_pred             --cccc-cccceEEEeec
Q 023563          203 --IDII-PLADSVTKLTA  217 (280)
Q Consensus       203 --~~ll-~~aD~i~~L~~  217 (280)
                        ...+ -++|.++.|..
T Consensus       212 ~GG~~l~h~~~~rl~l~k  229 (356)
T 3hr8_A          212 TGGLALKFYATMRMEVRR  229 (356)
T ss_dssp             THHHHHHHHCSEEEEEEE
T ss_pred             CCcchhhhhCcEEEEEEe
Confidence              1222 35787777775

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.61  E-value=1.3e-08  Score=92.26  Aligned_cols=58  Identities=19%  Similarity=0.201  Sum_probs=46.6

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCC
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSN  115 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~  115 (280)
                      +..+++++.|+...  ++++|+  +|++++|+|+||+||||++ ..++++ ...+.++.+...+
T Consensus        77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~-~~la~~~~~~~~~v~l~~~d  135 (295)
T 1ls1_A           77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTA-AKLALYYKGKGRRPLLVAAD  135 (295)
T ss_dssp             HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHH-HHHHHHHHHTTCCEEEEECC
T ss_pred             HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEecCC
Confidence            45778888887653  788998  9999999999999999999 878876 3457777766544

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.59  E-value=2.9e-09  Score=100.34  Aligned_cols=58  Identities=16%  Similarity=0.050  Sum_probs=40.7

Q ss_pred             CC--CEEEEeCcccHHH------HHHHHHHH-HhhcCCEEEEEEechhHhhhccCCccccccccceEE-Eeec--eeccc
Q 023563          155 QV--DVIGIDEAQFFED------LYDFCREA-ADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVT-KLTA--RCEFC  222 (280)
Q Consensus       155 ~p--~lLlLDEP~~~~~------i~~~l~~l-~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~-~L~~--~i~~~  222 (280)
                      +|  +++++|||+...+      .++.+.+. .+ .|.|++  +|++..+.+          +||++. .|.+  +.+..
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~~~~~----------l~~~i~~~L~~G~~~~~~  205 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE--MKAKKEEQA----------IIEKVYQYLTETKQPIRK  205 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHHHHHHHH----------HHHHHHHHHHTTCSCGGG
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccHHHHHH----------HHHHHHHHhccCCceeec
Confidence            88  9999999966554      45555555 44 377754  999998876          899988 6655  35555


Q ss_pred             cCc
Q 023563          223 GKR  225 (280)
Q Consensus       223 g~~  225 (280)
                      |+.
T Consensus       206 ~~~  208 (392)
T 1ni3_A          206 GDW  208 (392)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            543

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.59  E-value=1.6e-07  Score=89.05  Aligned_cols=34  Identities=18%  Similarity=0.042  Sum_probs=32.3

Q ss_pred             eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      -++++|+++.|+.++|+|+||||||||+ +.|.+.
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL-~~Lsg~  180 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLL-AAMTRA  180 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHH-HHHCSS
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHH-HHHHcC
Confidence            4799999999999999999999999999 999886

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.54  E-value=1e-08  Score=86.96  Aligned_cols=47  Identities=11%  Similarity=0.010  Sum_probs=36.7

Q ss_pred             cCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           56 RPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        56 ~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      +|+++.++...+.+..++..++|++++|+|||||||||++ +.|++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~-~~La~~l   49 (200)
T 3uie_A            3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLA-CALNQML   49 (200)
T ss_dssp             -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred             CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHH-HHHHHHH
Confidence            5788888888888899999999999999999999999999 8888854

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.54  E-value=3.6e-08  Score=81.76  Aligned_cols=32  Identities=22%  Similarity=0.222  Sum_probs=28.7

Q ss_pred             EeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           69 SEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        69 ~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ++++|++.+| +++|+|||||||||++ .+|.++
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll-~ai~~~   49 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIG-DAILFV   49 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHH-HHHHHH
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHH-HHHHHH
Confidence            6788999999 9999999999999999 877664

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.51  E-value=1.4e-07  Score=90.99  Aligned_cols=123  Identities=20%  Similarity=0.203  Sum_probs=71.1

Q ss_pred             EEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeeccccc
Q 023563           54 SPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKL  133 (280)
Q Consensus        54 ~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~  133 (280)
                      +++++...+.....++++++.+++|  +.|+||+|+|||||+ +.+++..  +.....+.....        .       
T Consensus        27 ~l~e~v~~l~~~~~~~~~g~~~p~g--vLL~GppGtGKT~La-raia~~~--~~~f~~is~~~~--------~-------   86 (476)
T 2ce7_A           27 ELKEVVEFLKDPSKFNRIGARMPKG--ILLVGPPGTGKTLLA-RAVAGEA--NVPFFHISGSDF--------V-------   86 (476)
T ss_dssp             HHHHHHHHHHCTHHHHTTTCCCCSE--EEEECCTTSSHHHHH-HHHHHHH--TCCEEEEEGGGT--------T-------
T ss_pred             HHHHHHHHhhChHHHhhcCCCCCCe--EEEECCCCCCHHHHH-HHHHHHc--CCCeeeCCHHHH--------H-------
Confidence            3444444454445677888889988  789999999999999 9888732  112211111000        0       


Q ss_pred             ccccccCchHHHHHHhhhhccCCCEEEEeCcccH----------------HHHHHHHHHHH---hhcCCEEEEEEechhH
Q 023563          134 PCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFF----------------EDLYDFCREAA---DHDGKTVIVAGLDGDY  194 (280)
Q Consensus       134 ~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~----------------~~i~~~l~~l~---~~~g~tviivtHdl~~  194 (280)
                      ....-.+...+...+..+....|.+|++||+...                ..+.+++..+-   ...+..||.+||..+.
T Consensus        87 ~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~  166 (476)
T 2ce7_A           87 ELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI  166 (476)
T ss_dssp             TCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGG
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhh
Confidence            0000001122333345566678999999999320                11333343332   2337889999999875


Q ss_pred             hh
Q 023563          195 LR  196 (280)
Q Consensus       195 ~~  196 (280)
                      +.
T Consensus       167 Ld  168 (476)
T 2ce7_A          167 LD  168 (476)
T ss_dssp             SC
T ss_pred             hc
Confidence            43

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.48  E-value=3.9e-08  Score=89.80  Aligned_cols=39  Identities=21%  Similarity=0.074  Sum_probs=28.3

Q ss_pred             hccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563          152 AYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRR  197 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~  197 (280)
                      ++.+|+++  |||   ..+.+.|++++ . +.+|+++||+...+..
T Consensus       156 ll~k~dl~--de~---~~l~~~l~~l~-~-~~~ii~~sh~~~~~~~  194 (318)
T 1nij_A          156 LLTKTDVA--GEA---EKLHERLARIN-A-RAPVYTVTHGDIDLGL  194 (318)
T ss_dssp             EEECTTTC--SCT---HHHHHHHHHHC-S-SSCEEECCSSCCCGGG
T ss_pred             EEECcccC--CHH---HHHHHHHHHhC-C-CCeEEEecccCCCHHH
Confidence            44666654  777   67888888875 3 8999999997554443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.48  E-value=6.7e-08  Score=80.55  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=25.8

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+++|++++|+|||||||||++ ++|++.
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~-~~La~~   32 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIA-EALANL   32 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHH-HHHHTC
T ss_pred             CCCCCeEEEEECCCCCCHHHHH-HHHHhc
Confidence            4789999999999999999999 999986

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.46  E-value=6.4e-08  Score=81.89  Aligned_cols=37  Identities=22%  Similarity=0.001  Sum_probs=22.5

Q ss_pred             CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ...+++||||++++|++++|+||+||||||+. +.|+.
T Consensus        11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~-~~La~   47 (199)
T 3vaa_A           11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLG-KAFAR   47 (199)
T ss_dssp             -------------CCCEEEEECCTTSCHHHHH-HHHHH
T ss_pred             CCCCCCceeEecCCCCEEEEEcCCCCCHHHHH-HHHHH
Confidence            35689999999999999999999999999999 87775

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.45  E-value=7.5e-07  Score=82.11  Aligned_cols=142  Identities=13%  Similarity=0.127  Sum_probs=73.2

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcc-hh------CCeeEEEecCCcccc-cccceeeee---------ccccc-cc
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQ------KGRNVAVIKSNKDTR-YGLDSIVTH---------DGVKL-PC  135 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~------~g~~i~~~~~~~~~~-~~~~~v~~~---------~~~~~-~~  135 (280)
                      -+++|+++.|.||+|+|||||+ ..++.. ..      .+..+.|+....... ..+......         ++... ..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla-~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~  196 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA  196 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHH-HHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCCCCeEEEEECCCCCCHHHHH-HHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence            4889999999999999999999 444432 12      355666765443210 000000000         00000 00


Q ss_pred             ccccCchHHHHHHhhhhc----cCCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCEEEEEEechh
Q 023563          136 CALTTLSSFRQKFGSDAY----DQVDVIGIDEAQFF------------------EDLYDFCREAADHDGKTVIVAGLDGD  193 (280)
Q Consensus       136 ~~~~~l~~~~~~~a~aL~----~~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~tviivtHdl~  193 (280)
                      .....+..+.... ..++    .++++|++|+.+..                  .+++..|++++++.|.+||+++|...
T Consensus       197 ~~~e~~~~ll~~l-~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~  275 (343)
T 1v5w_A          197 YTSEHQMELLDYV-AAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA  275 (343)
T ss_dssp             CSTTHHHHHHHHH-HHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred             CCHHHHHHHHHHH-HHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence            0111111222111 1222    68999999998421                  12445566777778999999999776


Q ss_pred             Hhhh--cc-CC----c--cccccccceEEEeec
Q 023563          194 YLRR--SF-GS----V--IDIIPLADSVTKLTA  217 (280)
Q Consensus       194 ~~~~--~~-~~----~--~~ll~~aD~i~~L~~  217 (280)
                      ....  .| ++    .  .-|-..+|-++.|..
T Consensus       276 ~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r  308 (343)
T 1v5w_A          276 DPGATMTFQADPKKPIGGHILAHASTTRISLRK  308 (343)
T ss_dssp             -----------------CCTTTTSSSEEEEEEE
T ss_pred             cCCCccccCCCCCcCCchHHHHHhCCEEEEEEE
Confidence            5433  34 11    0  124456788888775

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.42  E-value=8.1e-07  Score=81.38  Aligned_cols=47  Identities=21%  Similarity=0.280  Sum_probs=38.4

Q ss_pred             eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCC
Q 023563           68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSN  115 (280)
Q Consensus        68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~  115 (280)
                      +++++|++++|++++|+||||+||||++ ..|+++ ...|+++.++..+
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~-~~LA~~l~~~g~kVllid~D  142 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSL-AKMANYYAELGYKVLIAAAD  142 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHH-HHHHHHHHHTTCCEEEEECC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHH-HHHHHHHHHCCCeEEEEeCC
Confidence            4689999999999999999999999999 777765 4467777776544

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.41  E-value=1.6e-06  Score=80.49  Aligned_cols=145  Identities=21%  Similarity=0.145  Sum_probs=74.7

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccc---cccCchHHHHHHhhh
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC---ALTTLSSFRQKFGSD  151 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~l~~~~~~~a~a  151 (280)
                      +++|+++.|.||+|+|||||++.++......|..+.|+..........   ....+.....+   .......+.+. .+.
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~---a~~~g~~~~~l~i~~~~~~e~~~~~-~~~  135 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDTGEQALEI-CDA  135 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH---HHHTTCCGGGCEEECCSSHHHHHHH-HHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH---HHHcCCChhheeeeCCCCHHHHHHH-HHH
Confidence            889999999999999999999555544455667777776532211000   00000000000   00112222221 122


Q ss_pred             h--ccCCCEEEEeCccc---H--------------H--HHHHHHHHH---HhhcCCEEEEEEechhHhhhccCCc-----
Q 023563          152 A--YDQVDVIGIDEAQF---F--------------E--DLYDFCREA---ADHDGKTVIVAGLDGDYLRRSFGSV-----  202 (280)
Q Consensus       152 L--~~~p~lLlLDEP~~---~--------------~--~i~~~l~~l---~~~~g~tviivtHdl~~~~~~~~~~-----  202 (280)
                      +  -.+++++++|+++.   .              .  .+.+.++++   +++.|++||++.|-.......|++-     
T Consensus       136 l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~g  215 (356)
T 1u94_A          136 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTG  215 (356)
T ss_dssp             HHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTT
T ss_pred             HHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCC
Confidence            2  25899999999932   1              0  223344444   5667999999999766555445331     


Q ss_pred             c-ccccccceEEEeec-eecccc
Q 023563          203 I-DIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       203 ~-~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      . -|-.+||-++.+.. +....|
T Consensus       216 G~~l~~~advrl~l~r~~~~k~g  238 (356)
T 1u94_A          216 GNALKFYASVRLDIRRIGAVKEG  238 (356)
T ss_dssp             CSHHHHHCSEEEEEEEEEEEESS
T ss_pred             CcceeeeccEEEEEEEeeeeccC
Confidence            1 23346888887776 544333

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.40  E-value=9.9e-08  Score=81.37  Aligned_cols=39  Identities=21%  Similarity=0.303  Sum_probs=31.1

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS  114 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~  114 (280)
                      .++|++++|+||||||||||+ ++|.|+.. .|..++++.+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~-~~l~~~~~~~g~~~g~v~~   58 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLS-NPLAAALSAQGLPAEVVPM   58 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHH-HHHHHHHHHTTCCEEEEES
T ss_pred             CCCCeEEEEECCCCCCHHHHH-HHHHHHHhhcCCceEEEec
Confidence            578999999999999999999 99998754 2444555554

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.40  E-value=7.9e-08  Score=81.66  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=22.4

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      ++|++++|+||||||||||+ ++|.|+.
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl-~~L~~~~   28 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLL-KKLFQEH   28 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHH-HHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence            57999999999999999999 9998864

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.38  E-value=1.4e-07  Score=79.46  Aligned_cols=30  Identities=30%  Similarity=0.451  Sum_probs=25.4

Q ss_pred             eEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      ++|++|++++|+|||||||||++ ++|.++.
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~-~~L~~~~   30 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVR-KRIFEDP   30 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHH-HHHHHCT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHH-HHHHHhh
Confidence            46889999999999999999999 9998865

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.38  E-value=1.4e-06  Score=79.47  Aligned_cols=143  Identities=9%  Similarity=0.057  Sum_probs=69.3

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCccc-ccccceeeeeccccc----cc---cccc
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNKDT-RYGLDSIVTHDGVKL----PC---CALT  139 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~~~-~~~~~~v~~~~~~~~----~~---~~~~  139 (280)
                      -+++|+++.|.||+|+|||||++.++......      +..+.|+.-.... ...+.......+...    ..   ....
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~  182 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI  182 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence            48999999999999999999994433332222      5566676544321 000000000000000    00   0011


Q ss_pred             CchH---HHHHHhhhhc---cCCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563          140 TLSS---FRQKFGSDAY---DQVDVIGIDEAQFF------------------EDLYDFCREAADHDGKTVIVAGLDGDYL  195 (280)
Q Consensus       140 ~l~~---~~~~~a~aL~---~~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~tviivtHdl~~~  195 (280)
                      +..+   +.... .+++   .+|++|++|+.+..                  .+++..|++++++.|.+||++.|-....
T Consensus       183 ~~~~~~~~l~~l-~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~  261 (324)
T 2z43_A          183 NTDHQIAIVDDL-QELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP  261 (324)
T ss_dssp             SHHHHHHHHHHH-HHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC----
T ss_pred             CHHHHHHHHHHH-HHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecC
Confidence            1121   12211 2233   58999999998421                  1244556667777799999999976544


Q ss_pred             hhccCCc------cccccccceEEEeec
Q 023563          196 RRSFGSV------IDIIPLADSVTKLTA  217 (280)
Q Consensus       196 ~~~~~~~------~~ll~~aD~i~~L~~  217 (280)
                      ...|++.      .-|-..+|.++.|..
T Consensus       262 ~~~~~~~~~~~gg~~l~~~~d~~l~l~r  289 (324)
T 2z43_A          262 DMFYGDPTVAVGGHTLYHVPGIRIQLKK  289 (324)
T ss_dssp             --------------------CEEEEEEE
T ss_pred             CCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence            3333210      113345777777764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.31  E-value=1.5e-08  Score=92.89  Aligned_cols=51  Identities=22%  Similarity=0.266  Sum_probs=46.2

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCc-------eEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSG-------EIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~G-------ei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      +++.++++..||+..+++++++.+.+|       +.++|+||||+|||||+ +++++..
T Consensus        18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa-~~ia~~l   75 (334)
T 1in4_A           18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA-HIIASEL   75 (334)
T ss_dssp             TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH-HHHHHHH
T ss_pred             HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH-HHHHHHh
Confidence            578889999999888999999999887       89999999999999999 9998854

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.29  E-value=5.9e-07  Score=87.20  Aligned_cols=56  Identities=14%  Similarity=0.009  Sum_probs=48.0

Q ss_pred             hhhhccCC--CEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 GSDAYDQV--DVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 a~aL~~~p--~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      |++++.+|  ++||||||++.      ..+.++|+++++  |.|||+||||++.+.           +||++++|.+
T Consensus       409 a~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-----------~~d~~~~~~~  472 (517)
T 4ad8_A          409 AVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-----------RAHHHYKVEK  472 (517)
T ss_dssp             HHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-----------HSSEEEEEEC
T ss_pred             HHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-----------hCCEEEEEec
Confidence            44688999  99999999664      458888988875  899999999999775           7999999977

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.28  E-value=1.8e-06  Score=83.88  Aligned_cols=30  Identities=7%  Similarity=0.059  Sum_probs=26.1

Q ss_pred             eeeeEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      .+++++.++..+.|.|++||||||++ +.|.
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L-~~li  188 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGV-NAMI  188 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHH-HHHH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHH-HHHH
Confidence            46788899999999999999999999 6554

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.27  E-value=2.8e-08  Score=87.08  Aligned_cols=49  Identities=27%  Similarity=0.312  Sum_probs=43.2

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      ..+++++.+.|++..+++++++++++|  ++|+||||+|||||+ +++++..
T Consensus        25 ~~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~-~~i~~~~   73 (254)
T 1ixz_A           25 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLA-RAVAGEA   73 (254)
T ss_dssp             HHHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHH-HHHHHHT
T ss_pred             HHHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHH-HHHHHHh
Confidence            456788888887778899999999999  899999999999999 9998854

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.27  E-value=9.3e-07  Score=81.10  Aligned_cols=118  Identities=14%  Similarity=0.117  Sum_probs=59.6

Q ss_pred             Cce--EEEEEcCCCCcHHHHHHHHHhcchhC--CeeEEEecCCccc-ccc-cceeeeecccccccccccCchHHHHHHhh
Q 023563           77 SGE--IHVIVGPMFAGKTTTLLRRIQAETQK--GRNVAVIKSNKDT-RYG-LDSIVTHDGVKLPCCALTTLSSFRQKFGS  150 (280)
Q Consensus        77 ~Ge--i~~liGpNGsGKSTLl~~~l~gl~~~--g~~i~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~l~~~~~~~a~  150 (280)
                      .|.  .+.|.||+|+|||||+ +.+.+....  +..+.++...... ... +..+....+...+. .......+.+....
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~-~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~  118 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTL-RKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPR-RGLSRDEFLALLVE  118 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHH-HHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS-SCCCHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHH-HHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCC-CCCCHHHHHHHHHH
Confidence            446  8999999999999999 877765332  3344444321110 000 00000000000000 00112222222211


Q ss_pred             hh--ccCCCEEEEeCcccH-HHHHHHHHHHHh---h---cCCEEEEEEechhHhh
Q 023563          151 DA--YDQVDVIGIDEAQFF-EDLYDFCREAAD---H---DGKTVIVAGLDGDYLR  196 (280)
Q Consensus       151 aL--~~~p~lLlLDEP~~~-~~i~~~l~~l~~---~---~g~tviivtHdl~~~~  196 (280)
                      .+  ..+|.+|++||+... .+....|.++.+   .   .+.++|++||+.+...
T Consensus       119 ~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~  173 (389)
T 1fnn_A          119 HLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN  173 (389)
T ss_dssp             HHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred             HHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence            11  246889999999543 233444433332   1   3788999999986554

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.25  E-value=3.9e-07  Score=77.02  Aligned_cols=36  Identities=25%  Similarity=0.257  Sum_probs=24.0

Q ss_pred             eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      ++.+-.++.++|++++|+|||||||||++ ++|++..
T Consensus        18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~-~~L~~~~   53 (200)
T 4eun_A           18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIA-HGVADET   53 (200)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred             hHHHhhhcCCCCcEEEEECCCCCCHHHHH-HHHHHhh
Confidence            33334466789999999999999999999 8888754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.24  E-value=3.6e-08  Score=87.73  Aligned_cols=49  Identities=27%  Similarity=0.312  Sum_probs=42.9

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      ..+++++.+.|++..+++++++++++|  ++|+||||||||||+ +++++..
T Consensus        49 ~~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~-~~i~~~~   97 (278)
T 1iy2_A           49 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLA-RAVAGEA   97 (278)
T ss_dssp             HHHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHH-HHHHHHT
T ss_pred             HHHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHH-HHHHHHc
Confidence            345778888888878999999999999  899999999999999 9998854

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.24  E-value=2.1e-08  Score=87.72  Aligned_cols=43  Identities=14%  Similarity=0.006  Sum_probs=35.0

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      .|+++|+...|+.       +|++.+ ++++|+||||||||||+ ++|+|+.
T Consensus         9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll-~~i~g~~   51 (227)
T 1qhl_A            9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTM-AAFVTAL   51 (227)
T ss_dssp             EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHH-HHHHHHH
T ss_pred             EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHH-HHHhccc
Confidence            5888888766643       456666 89999999999999999 9999873

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.23  E-value=4.9e-07  Score=85.62  Aligned_cols=52  Identities=13%  Similarity=0.177  Sum_probs=41.6

Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      .+|+++|||||++.+      .+.+.|+++..+ |.++|++||+.....           .||+++.+..
T Consensus       354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~~ii~th~~~~~~-----------~~d~~~~~~~  411 (430)
T 1w1w_A          354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP-DLQFIVISLKNTMFE-----------KSDALVGVYR  411 (430)
T ss_dssp             SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT-TBEEEEECSCHHHHT-----------TCSEEEEEEE
T ss_pred             CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcC-CCEEEEEECCHHHHH-----------hCCEEEEEEE
Confidence            589999999996654      477777777554 789999999976653           7999999875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.22  E-value=5.2e-07  Score=75.19  Aligned_cols=26  Identities=12%  Similarity=0.174  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      +|++++|+||||||||||+ +.|.+..
T Consensus         4 ~g~~i~i~GpsGsGKSTL~-~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIK-NTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHH-HHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence            6899999999999999999 8888753

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.22  E-value=3.8e-08  Score=90.38  Aligned_cols=58  Identities=29%  Similarity=0.280  Sum_probs=44.9

Q ss_pred             cCceEEeCCeeeeEeeeeEeeCce------EEEEEcCCCCcHHHHHHHHHhcchh---CCeeEEEecC
Q 023563           56 RPPLFSLQNRNLHSEASVSSPSGE------IHVIVGPMFAGKTTTLLRRIQAETQ---KGRNVAVIKS  114 (280)
Q Consensus        56 ~~ls~~y~~~~vl~~isl~i~~Ge------i~~liGpNGsGKSTLl~~~l~gl~~---~g~~i~~~~~  114 (280)
                      +.+++.|++..+|++++..+.+++      ++||+||||||||||+ ++|.++..   .+..+..+..
T Consensus        64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~-~~L~~ll~~~~~~~~v~~i~~  130 (321)
T 3tqc_A           64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTS-RVLKALLSRWPDHPNVEVITT  130 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHH-HHHHHHHTTSTTCCCEEEEEG
T ss_pred             HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHH-HHHHHHhcccCCCCeEEEEee
Confidence            344566778888999999998887      9999999999999999 88888643   2344444443

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.20  E-value=8.9e-07  Score=80.79  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=58.0

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchhC----CeeEEEecCCccc-ccc-cceeeeecccccccccccCchHHHHHHh
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQK----GRNVAVIKSNKDT-RYG-LDSIVTHDGVKLPCCALTTLSSFRQKFG  149 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~----g~~i~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~l~~~~~~~a  149 (280)
                      ..+..+.|.||+|+|||||+ +.+.+....    +..+.++...... ... ...+....+...+. .............
T Consensus        43 ~~~~~vli~G~~G~GKTtl~-~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~  120 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVV-KFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPF-TGLSIAELYRRLV  120 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHH-HHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCS-SSCCHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHH-HHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHH
Confidence            45778999999999999999 777664321    3344444311100 000 00000000000000 0011222222222


Q ss_pred             hhh--ccCCCEEEEeCcccHH-----HHHHHHHHHH---hhcCCEEEEEEechhHhh
Q 023563          150 SDA--YDQVDVIGIDEAQFFE-----DLYDFCREAA---DHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       150 ~aL--~~~p~lLlLDEP~~~~-----~i~~~l~~l~---~~~g~tviivtHdl~~~~  196 (280)
                      ..+  ...|.+|++||+....     +++..+.++.   ...+.++|++||+.+...
T Consensus       121 ~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~  177 (386)
T 2qby_A          121 KAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD  177 (386)
T ss_dssp             HHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred             HHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence            222  2348899999995432     2333333333   233678999999887544

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=98.19  E-value=1.1e-05  Score=69.22  Aligned_cols=143  Identities=17%  Similarity=0.081  Sum_probs=76.5

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHh-cchhCCeeEEEecCCccccc--------cc--------ceeeeecccc-----
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQ-AETQKGRNVAVIKSNKDTRY--------GL--------DSIVTHDGVK-----  132 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~-gl~~~g~~i~~~~~~~~~~~--------~~--------~~v~~~~~~~-----  132 (280)
                      +++|+++.|.|+.|+|||||++.++. +....+..+.|+.-......        ..        +.+...+...     
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  106 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL  106 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhc
Confidence            79999999999999999999955443 33344566666543321100        00        0000000000     


Q ss_pred             -----cccccccCchHHHHHHhh-hhccCCCEEEEeCcc----------cHHHHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          133 -----LPCCALTTLSSFRQKFGS-DAYDQVDVIGIDEAQ----------FFEDLYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       133 -----~~~~~~~~l~~~~~~~a~-aL~~~p~lLlLDEP~----------~~~~i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                           ...........+.+.... .-..+++++++|--+          ...++...|+.++++.|+++++++|-.....
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~  186 (251)
T 2zts_A          107 PSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQH  186 (251)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----
T ss_pred             ccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccc
Confidence                 000001112222222221 123589999999752          2235667778888888999999998643322


Q ss_pred             hccCCccccccccceEEEeec
Q 023563          197 RSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       197 ~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ..+.....+-.+||-|+.|..
T Consensus       187 ~~~~~~~~~~~~aD~vi~l~~  207 (251)
T 2zts_A          187 GKLSRYGIEEFIARGVIVLDL  207 (251)
T ss_dssp             CCSSSSSCGGGGCSEEEEEEE
T ss_pred             cccccCCceeEEeeEEEEEEE
Confidence            111222233457898888865

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.19  E-value=1.5e-07  Score=84.27  Aligned_cols=40  Identities=23%  Similarity=0.435  Sum_probs=35.1

Q ss_pred             EeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           61 SLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        61 ~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      .|+...+++++++++++|  ++|+||||||||||+ ++++|..
T Consensus        29 ~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLa-kala~~~   68 (274)
T 2x8a_A           29 PVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLA-KAVANES   68 (274)
T ss_dssp             HHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHH-HHHHHHT
T ss_pred             HhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHH-HHHHHHc
Confidence            345567899999999999  999999999999999 9998853

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.16  E-value=2.7e-07  Score=86.43  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=34.3

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ..+++++|+++++|++++|+||||||||||+ +.+++.
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~-~~l~~~  192 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLA-AALLEL  192 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHH-HHHHhh
Confidence            3589999999999999999999999999999 988884

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.16  E-value=3e-06  Score=80.72  Aligned_cols=98  Identities=26%  Similarity=0.288  Sum_probs=57.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcchh---CCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhcc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAETQ---KGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYD  154 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl~~---~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~  154 (280)
                      +..+.|.||+|+|||||+ +.+++...   .+..+.++.....        .   ......+.......+..    .+..
T Consensus       130 ~~~lll~Gp~G~GKTtLa-~aia~~l~~~~~~~~v~~v~~~~~--------~---~~~~~~~~~~~~~~~~~----~~~~  193 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITSEKF--------L---NDLVDSMKEGKLNEFRE----KYRK  193 (440)
T ss_dssp             SCCEEEECSSSSSHHHHH-HHHHHHHHHHCCSSCEEEEEHHHH--------H---HHHHHHHHTTCHHHHHH----HHTT
T ss_pred             CCeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEeeHHHH--------H---HHHHHHHHcccHHHHHH----HhcC
Confidence            467899999999999999 88877532   1333333321100        0   00000010111112222    1223


Q ss_pred             CCCEEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEech
Q 023563          155 QVDVIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLDG  192 (280)
Q Consensus       155 ~p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHdl  192 (280)
                      +|++|++||+..       +..++..+..+.+. |+.+|++||+.
T Consensus       194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~-~~~iIitt~~~  237 (440)
T 2z4s_A          194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDRE  237 (440)
T ss_dssp             TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT-TCEEEEEESSC
T ss_pred             CCCEEEEeCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEECCC
Confidence            899999999932       33567777777664 89999999974

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.14  E-value=4.1e-06  Score=77.32  Aligned_cols=123  Identities=12%  Similarity=0.085  Sum_probs=70.4

Q ss_pred             eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeee-cccccccccccCch-HHH
Q 023563           68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTH-DGVKLPCCALTTLS-SFR  145 (280)
Q Consensus        68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~l~-~~~  145 (280)
                      |+.+.--+.+|+++.|.|++|+|||||++.+.......|..+.|+.-......-...+... .+.....+....+. .-+
T Consensus        36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~  115 (338)
T 4a1f_A           36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQW  115 (338)
T ss_dssp             HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHH
T ss_pred             HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHH
Confidence            4444445899999999999999999999555444455778888776543211100001000 00000000000110 011


Q ss_pred             HHH--hhhhccCCCEEEEeCcc-cHHHHHHHHHHHHhhc-CCEEEEEEe
Q 023563          146 QKF--GSDAYDQVDVIGIDEAQ-FFEDLYDFCREAADHD-GKTVIVAGL  190 (280)
Q Consensus       146 ~~~--a~aL~~~p~lLlLDEP~-~~~~i~~~l~~l~~~~-g~tviivtH  190 (280)
                      .++  +...+.++++++.|+|. +..++...++++.+++ |..+|+|-|
T Consensus       116 ~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          116 ENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             HHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            112  22334577899999994 5567888888888776 788888875

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.14  E-value=6.1e-06  Score=72.08  Aligned_cols=33  Identities=30%  Similarity=0.395  Sum_probs=23.7

Q ss_pred             eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++++++.++.|  +.|+||+|+||||++ +.+++.
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la-~~la~~   68 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLA-KAIAGE   68 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHH-HHHHHH
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHH-HHHHHH
Confidence            455666667776  889999999999999 888874

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.13  E-value=1.6e-06  Score=85.68  Aligned_cols=50  Identities=8%  Similarity=-0.001  Sum_probs=44.6

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      +..++++.-||...+++++++.+.+|+.++|+||||+|||||+ +.|+++.
T Consensus        35 ~rp~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtla-r~ia~~l   84 (604)
T 3k1j_A           35 VPEKLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLG-QAMAELL   84 (604)
T ss_dssp             CCSSHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHH-HHHHHTS
T ss_pred             ccccccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHH-HHHhccC
Confidence            4556667778888899999999999999999999999999999 9999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.12  E-value=1e-06  Score=77.51  Aligned_cols=26  Identities=23%  Similarity=0.234  Sum_probs=24.4

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHh---cc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQ---AE  102 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~---gl  102 (280)
                      ++|++++|+|||||||||++ ++|+   |+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~-k~La~~Lg~   53 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLC-KALAESLNW   53 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHH-HHHHHHTTC
T ss_pred             CCCcEEEEECCCCCCHHHHH-HHHHHhcCC
Confidence            78999999999999999999 9998   75

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=98.12  E-value=1.2e-05  Score=74.92  Aligned_cols=140  Identities=17%  Similarity=0.161  Sum_probs=74.4

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccccee--eeecccccccccccCchHHHHHHhhhh
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSI--VTHDGVKLPCCALTTLSSFRQKFGSDA  152 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~l~~~~~~~a~aL  152 (280)
                      +++|+++.|.||.|+|||||++.++......|..+.|+............-  +.......  ........+.... ..+
T Consensus        71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i--~~~~~~e~~l~~l-~~l  147 (366)
T 1xp8_A           71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLV--SQPDNGEQALEIM-ELL  147 (366)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEE--ECCSSHHHHHHHH-HHH
T ss_pred             ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHcee--ecCCcHHHHHHHH-HHH
Confidence            789999999999999999999555555555677777776543211100000  00000000  0001222222222 222


Q ss_pred             c--cCCCEEEEeCccc------------------H-HHHHHHHHHH---HhhcCCEEEEEEechhHhhhccCCc------
Q 023563          153 Y--DQVDVIGIDEAQF------------------F-EDLYDFCREA---ADHDGKTVIVAGLDGDYLRRSFGSV------  202 (280)
Q Consensus       153 ~--~~p~lLlLDEP~~------------------~-~~i~~~l~~l---~~~~g~tviivtHdl~~~~~~~~~~------  202 (280)
                      +  .++++|++|..+.                  + ..+.+.++++   +++.+++||++.|-.......|++-      
T Consensus       148 ~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg  227 (366)
T 1xp8_A          148 VRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGG  227 (366)
T ss_dssp             HTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------CH
T ss_pred             HhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccccCCc
Confidence            2  5799999999821                  1 1244455554   5677999999998655443333321      


Q ss_pred             cccccccceEEEeec
Q 023563          203 IDIIPLADSVTKLTA  217 (280)
Q Consensus       203 ~~ll~~aD~i~~L~~  217 (280)
                      .-|-.+||-++.|..
T Consensus       228 ~al~~~a~~rl~L~r  242 (366)
T 1xp8_A          228 RALKFYASVRLDVRK  242 (366)
T ss_dssp             HHHHHHCSEEEEEEE
T ss_pred             chhhheeeEEEEEEe
Confidence            113346888888876

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.10  E-value=1.1e-06  Score=76.14  Aligned_cols=37  Identities=19%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             eEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEec
Q 023563           73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIK  113 (280)
Q Consensus        73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~  113 (280)
                      .+.++|++++|.|||||||||++ ++|.++   +..+.+..
T Consensus        15 ~~~~~g~~i~i~G~~GsGKSTl~-~~L~~~---~g~v~~~~   51 (230)
T 2vp4_A           15 AEGTQPFTVLIEGNIGSGKTTYL-NHFEKY---KNDICLLT   51 (230)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHH-HTTGGG---TTTEEEEC
T ss_pred             CCCCCceEEEEECCCCCCHHHHH-HHHHhc---cCCeEEEe
Confidence            45689999999999999999999 999987   33444443

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.09  E-value=1.5e-06  Score=74.15  Aligned_cols=27  Identities=26%  Similarity=0.351  Sum_probs=24.3

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      ++|++++|+||||||||||+ +.|.+..
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~-~~L~~~~   32 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVR-EAVFKDP   32 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHH-HHHHHST
T ss_pred             CCCcEEEEECcCCCCHHHHH-HHHHhhC
Confidence            58999999999999999999 8887754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.09  E-value=5.4e-06  Score=74.67  Aligned_cols=29  Identities=24%  Similarity=0.245  Sum_probs=25.2

Q ss_pred             eEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +.++++..+.|.||+|+|||||+ +.+++.
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la-~ala~~   72 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLA-KAIANE   72 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHH-HHHHHH
T ss_pred             cCCCCCceEEEECCCCcCHHHHH-HHHHHH
Confidence            44678889999999999999999 888774

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.07  E-value=1.3e-07  Score=87.19  Aligned_cols=63  Identities=24%  Similarity=0.193  Sum_probs=51.8

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCC
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSN  115 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~  115 (280)
                      +++.+++.+.|+.+.+++++++++.+|.+++|+|++|+|||||+ +.+++.. ..+.++..+..+
T Consensus        30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~-~~l~~~~~~~~~~v~v~~~d   93 (341)
T 2p67_A           30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFL-EAFGMLLIREGLKVAVIAVD   93 (341)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHH-HHHHHHHHHTTCCEEEEEEC
T ss_pred             HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEEeec
Confidence            57788888888888899999999999999999999999999999 7777753 356666655433

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.07  E-value=8.1e-06  Score=74.24  Aligned_cols=124  Identities=10%  Similarity=0.109  Sum_probs=70.4

Q ss_pred             eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeee-cc-----ccccc--cc
Q 023563           66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTH-DG-----VKLPC--CA  137 (280)
Q Consensus        66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~-~~-----~~~~~--~~  137 (280)
                      ..|+.+.--+++|+++.|.|++|+|||||++.+.......|..+.++.-......-...+... .+     .....  +.
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~  135 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFA  135 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHC
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCC
Confidence            345555556899999999999999999999554444444566777765432211000000000 00     00000  11


Q ss_pred             ccCchHHHHHHhhhhccCCCEEEEeCc-ccHHHHHHHHHHHHhhcCCE--EEEEEec
Q 023563          138 LTTLSSFRQKFGSDAYDQVDVIGIDEA-QFFEDLYDFCREAADHDGKT--VIVAGLD  191 (280)
Q Consensus       138 ~~~l~~~~~~~a~aL~~~p~lLlLDEP-~~~~~i~~~l~~l~~~~g~t--viivtHd  191 (280)
                      ..+...+..  +...+.++++++.|+| .+..++.+.++++.++.|..  +|++-|-
T Consensus       136 ~~~~~~l~~--a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l  190 (315)
T 3bh0_A          136 SEDWGKLSM--AIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYL  190 (315)
T ss_dssp             SSCHHHHHH--HHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred             HHHHHHHHH--HHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence            111111111  1223446788888888 45667888888887766777  8888763

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.06  E-value=2e-05  Score=66.96  Aligned_cols=89  Identities=19%  Similarity=0.297  Sum_probs=53.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ  155 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~  155 (280)
                      .+..+.|.||+|+|||||+ +.+.... ..+..+.++......               .     .+....     ..+.+
T Consensus        51 ~~~~~ll~G~~G~GKT~la-~~l~~~~~~~~~~~~~~~~~~~~---------------~-----~~~~~~-----~~~~~  104 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLI-HAACARANELERRSFYIPLGIHA---------------S-----ISTALL-----EGLEQ  104 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHH-HHHHHHHHHTTCCEEEEEGGGGG---------------G-----SCGGGG-----TTGGG
T ss_pred             CCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEEEHHHHH---------------H-----HHHHHH-----HhccC
Confidence            5778999999999999999 7776532 233344333221100               0     000000     11257


Q ss_pred             CCEEEEeCccc-------HHHHHHHHHHHHhhcCCE-EEEEEech
Q 023563          156 VDVIGIDEAQF-------FEDLYDFCREAADHDGKT-VIVAGLDG  192 (280)
Q Consensus       156 p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~t-viivtHdl  192 (280)
                      +.+|++||...       ...+++.+...... +.. +|++++..
T Consensus       105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~~~~~~  148 (242)
T 3bos_A          105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ-KRGSLIVSASAS  148 (242)
T ss_dssp             SSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH-CSCEEEEEESSC
T ss_pred             CCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCCeEEEEcCCC
Confidence            89999999832       33467777776665 655 88888743

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.01  E-value=8.1e-07  Score=86.19  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=29.2

Q ss_pred             eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+++++|++.+| +.+|+|+||||||||+ .+|..
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~ll-eAl~~   82 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIV-DALGL   82 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHT-HHHHH
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHH-HHHHH
Confidence            567899999999 9999999999999999 66644

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.00  E-value=2.8e-06  Score=74.02  Aligned_cols=25  Identities=36%  Similarity=0.321  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHh---cc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQ---AE  102 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~---gl  102 (280)
                      ++++++|+||||||||||+ ++|+   |+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~-k~La~~lg~   53 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVC-QRIAQNFGL   53 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHH-HHHHHHHCC
T ss_pred             CCcEEEEECCCCCCHHHHH-HHHHHHhCC
Confidence            4789999999999999999 9998   76

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.00  E-value=1.1e-06  Score=85.09  Aligned_cols=49  Identities=27%  Similarity=0.312  Sum_probs=41.4

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      +.+++++...|.+..+++++++++++|  +.|+||||+|||||+ +.+++..
T Consensus        40 k~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLa-raIa~~~   88 (499)
T 2dhr_A           40 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLA-RAVAGEA   88 (499)
T ss_dssp             HHHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHH-HHHHHHT
T ss_pred             HHHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHH-HHHHHHh
Confidence            355667766676667899999999999  899999999999999 9998854

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.00  E-value=1.5e-06  Score=78.69  Aligned_cols=30  Identities=23%  Similarity=0.274  Sum_probs=27.1

Q ss_pred             eEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      |++.+|++++|+||||||||||+ ++|.|+.
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll-~~l~g~~  193 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLL-NAINPGL  193 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHH-HHHSTTC
T ss_pred             HHHhcCCeEEEECCCCCcHHHHH-HHhcccc
Confidence            55678999999999999999999 9999973

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.99  E-value=2.9e-06  Score=69.64  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=23.4

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+|++++|+|||||||||++ +.|.+.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~-~~l~~~   31 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVA-SEVAHQ   31 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHH-HHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHH-HHHHHh
Confidence            56999999999999999999 888764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.96  E-value=3.5e-05  Score=73.23  Aligned_cols=149  Identities=17%  Similarity=0.072  Sum_probs=82.9

Q ss_pred             eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCccc-----c-----ccc--ceeee----ec-
Q 023563           68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDT-----R-----YGL--DSIVT----HD-  129 (280)
Q Consensus        68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~-----~-----~~~--~~v~~----~~-  129 (280)
                      |+.+.--+++|+++.|.|++|+|||||++.+...... .|..+.++.-....     |     .++  ..+..    .. 
T Consensus       190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~  269 (444)
T 2q6t_A          190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRD  269 (444)
T ss_dssp             HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHH
T ss_pred             hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHH
Confidence            4444445899999999999999999999444444433 46677776543211     0     000  00000    00 


Q ss_pred             --------------ccccccccccCchHHHHHHhhhhc--cCCCEEEEeCcc----c--H----------HHHHHHHHHH
Q 023563          130 --------------GVKLPCCALTTLSSFRQKFGSDAY--DQVDVIGIDEAQ----F--F----------EDLYDFCREA  177 (280)
Q Consensus       130 --------------~~~~~~~~~~~l~~~~~~~a~aL~--~~p~lLlLDEP~----~--~----------~~i~~~l~~l  177 (280)
                                    ...........+.++..+. +.+.  .+++++++|..+    .  .          ..+...|+.+
T Consensus       270 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~-~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~l  348 (444)
T 2q6t_A          270 FSRLVDVASRLSEAPIYIDDTPDLTLMEVRARA-RRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKAL  348 (444)
T ss_dssp             HHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHH-HHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHH-HHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence                          0000000001223332222 2222  489999999982    1  1          1366777888


Q ss_pred             HhhcCCEEEEEEechhHhhhcc---------CCccccccccceEEEeec
Q 023563          178 ADHDGKTVIVAGLDGDYLRRSF---------GSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       178 ~~~~g~tviivtHdl~~~~~~~---------~~~~~ll~~aD~i~~L~~  217 (280)
                      +++.|++||+++|--.......         .+...|-..||.|++|..
T Consensus       349 Ake~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r  397 (444)
T 2q6t_A          349 ARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR  397 (444)
T ss_dssp             HHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred             HHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence            8888999999999433221100         011234568999999987

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.96  E-value=1e-06  Score=80.34  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=26.7

Q ss_pred             eEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +++.+|++++|+||||||||||+ +.|.|+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLl-n~L~g~  196 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLL-NAISPE  196 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHH-HHHCC-
T ss_pred             HhhcCCCEEEEECCCCCCHHHHH-HHhccc
Confidence            77889999999999999999999 999986

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.95  E-value=4.4e-06  Score=67.86  Aligned_cols=28  Identities=32%  Similarity=0.451  Sum_probs=22.3

Q ss_pred             eeeEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           71 ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        71 isl~i~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      .++++.+| +.+|+|||||||||++ ..|.
T Consensus        17 ~~i~f~~g-~~~I~G~NGsGKStil-~Ai~   44 (149)
T 1f2t_A           17 TVVEFKEG-INLIIGQNGSGKSSLL-DAIL   44 (149)
T ss_dssp             EEEECCSE-EEEEECCTTSSHHHHH-HHHH
T ss_pred             eEEEcCCC-eEEEECCCCCCHHHHH-HHHH
Confidence            34556655 9999999999999999 6554

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.95  E-value=4e-05  Score=68.07  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ++..+.|.||+|+||||++ +.+++.
T Consensus        53 ~~~~vll~Gp~GtGKT~la-~~la~~   77 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLA-RAVATE   77 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHH-HHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHH-HHHHHH
Confidence            4567899999999999999 888763

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.95  E-value=1.9e-06  Score=75.20  Aligned_cols=149  Identities=14%  Similarity=0.016  Sum_probs=71.2

Q ss_pred             eCceE-EEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecc------ccc--ccccccCchHHHH
Q 023563           76 PSGEI-HVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG------VKL--PCCALTTLSSFRQ  146 (280)
Q Consensus        76 ~~Gei-~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~------~~~--~~~~~~~l~~~~~  146 (280)
                      .+|+. +.+.|+-|+||||++.++...+...|.++.+..-+...+......+....      ...  .......+..   
T Consensus         3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~---   79 (228)
T 2r8r_A            3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDA---   79 (228)
T ss_dssp             CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHH---
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHH---
Confidence            35664 77899999999999745555556667776544332211110000000000      000  0001112222   


Q ss_pred             HHhhhhccCCCEEEEeCcccH-------HHHHHHHHHHHhhcCCEEEEEEe-----chhHhhhccCCccccccccceEEE
Q 023563          147 KFGSDAYDQVDVIGIDEAQFF-------EDLYDFCREAADHDGKTVIVAGL-----DGDYLRRSFGSVIDIIPLADSVTK  214 (280)
Q Consensus       147 ~~a~aL~~~p~lLlLDEP~~~-------~~i~~~l~~l~~~~g~tviivtH-----dl~~~~~~~~~~~~ll~~aD~i~~  214 (280)
                          ++...|+++|+||+-..       ...++.+..+... |..++.++|     .++.+...+-+..---.+-|+++-
T Consensus        80 ----~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s-gidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~  154 (228)
T 2r8r_A           80 ----LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA-GIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQ  154 (228)
T ss_dssp             ----HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT-TCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHH
T ss_pred             ----HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC-CCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHh
Confidence                12358999999998321       1133334444444 889998888     443332111111111123355554


Q ss_pred             eec-eeccccCcceeeeee
Q 023563          215 LTA-RCEFCGKRAFFTLRK  232 (280)
Q Consensus       215 L~~-~i~~~g~~~~~~~~~  232 (280)
                      ..+ ..+.+-+|+++..|.
T Consensus       155 ~a~~v~lvD~~p~~l~~rl  173 (228)
T 2r8r_A          155 EAFDLVLIDLPPRELLERL  173 (228)
T ss_dssp             TCSEEEEBCCCHHHHHHHH
T ss_pred             hCCeEEEecCCHHHHHHHH
Confidence            444 333345666666443

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.93  E-value=2.1e-06  Score=80.63  Aligned_cols=50  Identities=24%  Similarity=0.154  Sum_probs=44.8

Q ss_pred             cEEEcCceEEeCC-eeeeE--------------eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           52 MVSPRPPLFSLQN-RNLHS--------------EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        52 ~l~~~~ls~~y~~-~~vl~--------------~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      -+.++|+++.|.. +..|+              |+++.|.+|+.++|+||+|+|||||+ +.|.+.
T Consensus       133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl-~~Iar~  197 (422)
T 3ice_A          133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL-QNIAQS  197 (422)
T ss_dssp             SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH-HHHHHH
T ss_pred             CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHH-HHHHHH
Confidence            4789999999964 67888              99999999999999999999999999 777664

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.93  E-value=8.4e-06  Score=73.72  Aligned_cols=97  Identities=22%  Similarity=0.266  Sum_probs=54.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ  155 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~  155 (280)
                      .+..+.|.||+|+|||||+ +.+++... .+..+.++.....        ..   .............+...     ..+
T Consensus        36 ~~~~lll~G~~GtGKT~la-~~i~~~~~~~~~~~~~i~~~~~--------~~---~~~~~~~~~~~~~~~~~-----~~~   98 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLL-QAAGNEAKKRGYRVIYSSADDF--------AQ---AMVEHLKKGTINEFRNM-----YKS   98 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHH-HHHHHHHHHTTCCEEEEEHHHH--------HH---HHHHHHHHTCHHHHHHH-----HHT
T ss_pred             CCCeEEEECCCCCcHHHHH-HHHHHHHHHCCCEEEEEEHHHH--------HH---HHHHHHHcCcHHHHHHH-----hcC
Confidence            3467889999999999999 88876432 2344443321100        00   00000000111222221     246


Q ss_pred             CCEEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEec
Q 023563          156 VDVIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLD  191 (280)
Q Consensus       156 p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHd  191 (280)
                      +++|++||+..       +..++..+..+.+. |..+|++++.
T Consensus        99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~-~~~iii~~~~  140 (324)
T 1l8q_A           99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASDR  140 (324)
T ss_dssp             CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CCEEEEcCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence            99999999932       23466677666654 7777777764

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.92  E-value=2e-05  Score=71.46  Aligned_cols=142  Identities=15%  Similarity=0.066  Sum_probs=72.4

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcc--h----------hCC----eeEEEecCCccc-ccccceeeee--------
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE--T----------QKG----RNVAVIKSNKDT-RYGLDSIVTH--------  128 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl--~----------~~g----~~i~~~~~~~~~-~~~~~~v~~~--------  128 (280)
                      -+++|+++.|.||+|+|||||++.++...  .          ..|    ..+.|+.-.... ...+......        
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~  173 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV  173 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence            47899999999999999999994443321  1          123    567777544321 0000000000        


Q ss_pred             -cccccccccccCch---HHHHHHhhhhc--cCCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCE
Q 023563          129 -DGVKLPCCALTTLS---SFRQKFGSDAY--DQVDVIGIDEAQFF------------------EDLYDFCREAADHDGKT  184 (280)
Q Consensus       129 -~~~~~~~~~~~~l~---~~~~~~a~aL~--~~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~t  184 (280)
                       ++...  ....+..   .+.......+.  .+++++++|.-+..                  .+++..|++++++.|.+
T Consensus       174 ~~~l~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~  251 (322)
T 2i1q_A          174 LDNTFV--ARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCV  251 (322)
T ss_dssp             HHTEEE--EECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             hcCEEE--EeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence             00000  0011111   12222211121  47999999998321                  12445566777778999


Q ss_pred             EEEEEechhHhhhccCCc------cccccccceEEEeec
Q 023563          185 VIVAGLDGDYLRRSFGSV------IDIIPLADSVTKLTA  217 (280)
Q Consensus       185 viivtHdl~~~~~~~~~~------~~ll~~aD~i~~L~~  217 (280)
                      ||++.|-.......|++-      .-|-..+|.++.|+.
T Consensus       252 vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~  290 (322)
T 2i1q_A          252 VLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRK  290 (322)
T ss_dssp             EEEEECEECC-------CCEESSHHHHHHHCSEEEEEEE
T ss_pred             EEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEe
Confidence            999888543332222110      012345788888775

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.90  E-value=1.3e-05  Score=81.45  Aligned_cols=123  Identities=20%  Similarity=0.203  Sum_probs=63.7

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchh----CCeeEEEecCCcccc------------cccceeeee----cccccc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----KGRNVAVIKSNKDTR------------YGLDSIVTH----DGVKLP  134 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~g~~i~~~~~~~~~~------------~~~~~v~~~----~~~~~~  134 (280)
                      +..|+.+.|+||+||||||++ .++.+...    .|..+.++.+.....            ..++..+..    ......
T Consensus       106 l~~~~~vii~gpTGSGKTtll-p~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~  184 (773)
T 2xau_A          106 YQNNQIMVFVGETGSGKTTQI-PQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSN  184 (773)
T ss_dssp             HHHCSEEEEECCTTSSHHHHH-HHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCT
T ss_pred             HhCCCeEEEECCCCCCHHHHH-HHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCC
Confidence            567899999999999999987 55543211    145566555432210            001111110    000000


Q ss_pred             c--ccccCchHHHH-HHhhhhccCCCEEEEeCccc-HHH---HHHHHHHHHhh--cCCEEEE-EEechhHhhhc
Q 023563          135 C--CALTTLSSFRQ-KFGSDAYDQVDVIGIDEAQF-FED---LYDFCREAADH--DGKTVIV-AGLDGDYLRRS  198 (280)
Q Consensus       135 ~--~~~~~l~~~~~-~~a~aL~~~p~lLlLDEP~~-~~~---i~~~l~~l~~~--~g~tvii-vtHdl~~~~~~  198 (280)
                      .  ....--..+.. ..+..++.++++||+|||.. ..+   ++..++.+...  ...+|++ +||+.+.+.+.
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~  258 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRY  258 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHH
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHH
Confidence            0  00000111111 11345788999999999964 222   34445554432  2456666 49998877663

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.90  E-value=1.2e-05  Score=74.76  Aligned_cols=54  Identities=17%  Similarity=0.273  Sum_probs=41.7

Q ss_pred             hhccC-CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          151 DAYDQ-VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       151 aL~~~-p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +++.+ |++||||||++..      .+.+.|.++.+  +.+||++||+.+. ..          +||++++|+.
T Consensus       300 ~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~~~-~~----------~~d~~~~l~k  360 (371)
T 3auy_A          300 ALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHREL-ED----------VADVIINVKK  360 (371)
T ss_dssp             HHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCGGG-GG----------GCSEEEEEEE
T ss_pred             HHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChHHH-Hh----------hCCEEEEEEe
Confidence            45678 9999999997654      46666666532  5689999999874 33          8999999975

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.89  E-value=4.4e-06  Score=68.21  Aligned_cols=25  Identities=36%  Similarity=0.476  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .|++++|+|||||||||++ +.|++.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~-~~La~~   27 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIG-RQLAQQ   27 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHH-HHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHH-HHHHHH
Confidence            4688999999999999999 888874

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.89  E-value=0.00014  Score=58.81  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|++|+|||||+ +.+.|.
T Consensus         5 ~v~lvG~~gvGKStL~-~~l~~~   26 (165)
T 2wji_A            5 EIALIGNPNVGKSTIF-NALTGE   26 (165)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHCC
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            6899999999999999 778774

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.89  E-value=5.5e-06  Score=77.01  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=29.6

Q ss_pred             eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      -++++++. .+|++++|+||||||||||+ ++|.|+.
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLl-n~L~g~~  239 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLL-NALLGLQ  239 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHH-HHHHCCS
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHH-HHHhccc
Confidence            35666664 47999999999999999999 9999864

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=97.87  E-value=2.2e-05  Score=65.57  Aligned_cols=56  Identities=16%  Similarity=0.116  Sum_probs=42.9

Q ss_pred             hhhhc----cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          149 GSDAY----DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       149 a~aL~----~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      |++++    ..|+++|||||++.+      .+.++|+++.+  +.++|++||+.....           +||+++.+..
T Consensus        76 a~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~~~-----------~ad~i~~v~~  141 (173)
T 3kta_B           76 AFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVMMA-----------NADKIIGVSM  141 (173)
T ss_dssp             HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHHHT-----------TCSEEEEEEE
T ss_pred             HHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHHHH-----------hCCEEEEEEe
Confidence            56665    457999999996654      47788887764  578999999987653           8999997753

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.86  E-value=6.3e-06  Score=70.41  Aligned_cols=29  Identities=10%  Similarity=0.188  Sum_probs=24.0

Q ss_pred             eEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +...+|++++|+||||||||||+ +.|.+.
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~-~~L~~~   42 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIK-NALLSQ   42 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             CCCCCCCEEEEECcCCCCHHHHH-HHHHhh
Confidence            44568999999999999999999 777764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.86  E-value=6.9e-06  Score=69.40  Aligned_cols=41  Identities=27%  Similarity=0.242  Sum_probs=31.3

Q ss_pred             eeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563           71 ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN  115 (280)
Q Consensus        71 isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~  115 (280)
                      +--++++|.+++|+|++||||||++ +.|.+...   .+.++.++
T Consensus        14 ~~~~~~~~~~i~i~G~~GsGKSTl~-~~L~~~~~---~~~~i~~D   54 (207)
T 2qt1_A           14 LVPRGSKTFIIGISGVTNSGKTTLA-KNLQKHLP---NCSVISQD   54 (207)
T ss_dssp             CCCCSCCCEEEEEEESTTSSHHHHH-HHHHTTST---TEEEEEGG
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHH-HHHHHhcC---CcEEEeCC
Confidence            3356889999999999999999999 88887431   24455544

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.85  E-value=7.2e-06  Score=69.36  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEec
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIK  113 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~  113 (280)
                      ..++|++++|+|||||||||++ +.|.++. ..+..+.+..
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~-~~l~~~~~~~~~~v~~~~   57 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLA-NQLSQTLREQGISVCVFH   57 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHH-HHHHHHHHHTTCCEEEEE
T ss_pred             ccCCCeEEEEECCCCCCHHHHH-HHHHHHHhhcCCeEEEec
Confidence            3678999999999999999999 8888754 2455555443

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.82  E-value=4.7e-05  Score=82.92  Aligned_cols=140  Identities=21%  Similarity=0.162  Sum_probs=80.0

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccc---eeeeecccccccccccCchHHHHHHhhh
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLD---SIVTHDGVKLPCCALTTLSSFRQKFGSD  151 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~~~~~a~a  151 (280)
                      +++|+++.|.||+|+|||||++.+.......|..+.|+.-......-..   .+ ....+..  .....+.++..+.-+.
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGv-d~~~L~i--~~~~~leei~~~l~~l  805 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGV-DIDNLLC--SQPDTGEQALEICDAL  805 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTC-CGGGCEE--ECCSSHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCC-ChhheEE--ecCCcHHHHHHHHHHH
Confidence            8999999999999999999994444444456667777754332211000   00 0001100  0111233333332111


Q ss_pred             h-ccCCCEEEEeCccc------------------H-HHHHHHHHH---HHhhcCCEEEEEEechhHhhhccCC------c
Q 023563          152 A-YDQVDVIGIDEAQF------------------F-EDLYDFCRE---AADHDGKTVIVAGLDGDYLRRSFGS------V  202 (280)
Q Consensus       152 L-~~~p~lLlLDEP~~------------------~-~~i~~~l~~---l~~~~g~tviivtHdl~~~~~~~~~------~  202 (280)
                      . -.+|+++++|+.+.                  + .++.+.+++   ++++.|++||+++|-.......||+      .
T Consensus       806 v~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs  885 (1706)
T 3cmw_A          806 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG  885 (1706)
T ss_dssp             HHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSC
T ss_pred             HHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCCc
Confidence            1 25899999999831                  1 124444444   4667799999999965554444542      1


Q ss_pred             cccccccceEEEeec
Q 023563          203 IDIIPLADSVTKLTA  217 (280)
Q Consensus       203 ~~ll~~aD~i~~L~~  217 (280)
                      .-|-..||-++.+..
T Consensus       886 ~~Leq~ADvvl~L~R  900 (1706)
T 3cmw_A          886 NALKFYASVRLDIRR  900 (1706)
T ss_dssp             SHHHHHEEEEEEEEE
T ss_pred             chhhheeeEEEEEEe
Confidence            223456888888865

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.82  E-value=1.6e-05  Score=75.78  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=29.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEecCC
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVIKSN  115 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~~~~  115 (280)
                      ++.+++++||+||||||++ ..|+. +...|.++.++..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~-~kLA~~l~~~G~kVllv~~D  134 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTA-GKLAYFYKKRGYKVGLVAAD  134 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHH-HHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEEecC
Confidence            5799999999999999999 55554 45567777766543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.81  E-value=5.3e-06  Score=75.12  Aligned_cols=28  Identities=32%  Similarity=0.497  Sum_probs=24.6

Q ss_pred             eEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +++.+|++++|+||||||||||+ ++|. +
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLl-n~l~-~  187 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSIL-SRLT-G  187 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHH-HHHH-S
T ss_pred             HhhccCcEEEEECCCCCCHHHHH-HHHH-H
Confidence            35568999999999999999999 8887 5

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.81  E-value=5.9e-05  Score=66.51  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=21.9

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +..+.-+.|.||.|+|||||+ +.++.
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la-~~la~   73 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLA-KAVAT   73 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHH-HHHHH
T ss_pred             CCCCCeEEEECCCCCcHHHHH-HHHHH
Confidence            345667899999999999999 88865

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.80  E-value=7.7e-05  Score=74.59  Aligned_cols=120  Identities=13%  Similarity=0.015  Sum_probs=61.2

Q ss_pred             eeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----CC-----eeEEEecCCcccccccceeee-----eccccccccc
Q 023563           72 SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----KG-----RNVAVIKSNKDTRYGLDSIVT-----HDGVKLPCCA  137 (280)
Q Consensus        72 sl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~g-----~~i~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~  137 (280)
                      |+++++|..++|+|++|+|||||+ +.+.+...    .|     ..+....+ ...+.++....+     ........+.
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl-~~L~~~~~~~~~~G~V~~g~~~~d~~~-~e~~~giti~~~~~~~~~~~~~~nliD   80 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLT-EALLYKTGAKERRGRVEEGTTTTDYTP-EAKLHRTTVRTGVAPLLFRGHRVFLLD   80 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHH-HHHHHHTTSSSSCCCGGGTCCSSCCSH-HHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred             CCccCCCcEEEEECCCCChHHHHH-HHHHHhcCCCCccceecCCcccccCCH-HHHhcCCeEEecceEEeeCCEEEEEEe
Confidence            467889999999999999999999 77764321    11     11100000 000112211111     1111111222


Q ss_pred             ccCchHHHHHHhhh-hccCCCEEEEeCcccHH--HHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563          138 LTTLSSFRQKFGSD-AYDQVDVIGIDEAQFFE--DLYDFCREAADHDGKTVIVAGLDGDYL  195 (280)
Q Consensus       138 ~~~l~~~~~~~a~a-L~~~p~lLlLDEP~~~~--~i~~~l~~l~~~~g~tviivtHdl~~~  195 (280)
                      ..+..++.....++ -..+.-++++| |+...  ...+.++.+.+ .+..+|++.|.+|..
T Consensus        81 TpG~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~-~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           81 APGYGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             CCCSGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC
T ss_pred             CCCccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHH-ccCCEEEEecCCchh
Confidence            22333333322222 24688899999 64321  22344444444 489999999999865

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.74  E-value=7.7e-05  Score=68.33  Aligned_cols=119  Identities=12%  Similarity=0.075  Sum_probs=62.2

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhC--CeeEEEecCCccccc----ccceeeeecccccccccccCchHH-HHH
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQK--GRNVAVIKSNKDTRY----GLDSIVTHDGVKLPCCALTTLSSF-RQK  147 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~--g~~i~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~l~~~-~~~  147 (280)
                      +++| ++-|.||.|+|||||++.++......  |..+.|+........    .++.  ..++...  ....+.+.. .. 
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGv--d~d~llv--~~~~~~E~~~l~-   99 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGV--DPERVIH--TPVQSLEQLRID-   99 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTC--CGGGEEE--EECSBHHHHHHH-
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCC--CHHHeEE--EcCCCHHHHHHH-
Confidence            7889 89999999999999986666655443  667777765432211    0110  0011110  011122222 11 


Q ss_pred             Hhhhh----ccCCCEEEEeCccc--------------------HH-HHHHHH---HHHHhhcCCEEEEEEechhHhhhcc
Q 023563          148 FGSDA----YDQVDVIGIDEAQF--------------------FE-DLYDFC---REAADHDGKTVIVAGLDGDYLRRSF  199 (280)
Q Consensus       148 ~a~aL----~~~p~lLlLDEP~~--------------------~~-~i~~~l---~~l~~~~g~tviivtHdl~~~~~~~  199 (280)
                      ....+    -.+|+++++|--++                    +. .+-+.|   ..++++.|+++|++.|-.. ...+|
T Consensus       100 i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k-~G~~f  178 (333)
T 3io5_A          100 MVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE-TQEMF  178 (333)
T ss_dssp             HHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--------
T ss_pred             HHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee-cCccc
Confidence            11122    24799999998721                    11 122333   3456677999999999877 55555


Q ss_pred             C
Q 023563          200 G  200 (280)
Q Consensus       200 ~  200 (280)
                      +
T Consensus       179 g  179 (333)
T 3io5_A          179 S  179 (333)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.71  E-value=3.5e-05  Score=72.78  Aligned_cols=43  Identities=19%  Similarity=0.179  Sum_probs=35.2

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      |+++|+ ++|++..     .+++.+|++++|+||||||||||+ .+|.++
T Consensus         7 l~~~~~-~~~~~~~-----~~~~~~~~~~~i~G~nG~GKstll-~ai~~~   49 (430)
T 1w1w_A            7 LELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMM-DAISFV   49 (430)
T ss_dssp             EEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             EEEeCE-EEECCce-----eEEecCCCEEEEECCCCCCHHHHH-HHHHhh
Confidence            788898 7887642     255778999999999999999999 777664

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.71  E-value=0.00011  Score=67.69  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ..-.++|+|++|+|||||+ +.+.+.
T Consensus       166 ~~~~v~lvG~~gvGKSTLi-n~L~~~  190 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLL-KALTTA  190 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHH-HHHCSS
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHhCC
Confidence            4458999999999999999 888774

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.71  E-value=9.1e-05  Score=80.68  Aligned_cols=146  Identities=21%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccccee--eeecccccccccccCchHHHHHHhhhh
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSI--VTHDGVKLPCCALTTLSSFRQKFGSDA  152 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~l~~~~~~~a~aL  152 (280)
                      +++|+++.|.||.|+|||||++.++......|..+.|+.-..........-  +..+....  ........+.... +.+
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i--~~~~~~e~~l~~l-~~l  456 (1706)
T 3cmw_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLC--SQPDTGEQALEIC-DAL  456 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEE--ECCSSHHHHHHHH-HHH
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHcCCCHHHeEE--cCCCCHHHHHHHH-HHH
Confidence            889999999999999999999666655555677788876543221100000  00000000  0111222332222 222


Q ss_pred             --ccCCCEEEEeCccc------------------H-HHHHHHHHHH---HhhcCCEEEEEEechhHhhhccCC------c
Q 023563          153 --YDQVDVIGIDEAQF------------------F-EDLYDFCREA---ADHDGKTVIVAGLDGDYLRRSFGS------V  202 (280)
Q Consensus       153 --~~~p~lLlLDEP~~------------------~-~~i~~~l~~l---~~~~g~tviivtHdl~~~~~~~~~------~  202 (280)
                        -.+|+++++|..+.                  + ..+.+.++++   +++.|++||+++|-...+...|++      -
T Consensus       457 v~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg  536 (1706)
T 3cmw_A          457 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG  536 (1706)
T ss_dssp             HHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSC
T ss_pred             HHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCC
Confidence              25899999999821                  1 1233444444   566799999999976554443432      1


Q ss_pred             cccccccceEEEeec-eecccc
Q 023563          203 IDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       203 ~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                      .-|-.+||-++.+.. .....|
T Consensus       537 ~ale~~ADv~L~L~R~~~~~~g  558 (1706)
T 3cmw_A          537 NALKFYASVRLDIRRIGAVKEG  558 (1706)
T ss_dssp             SHHHHHEEEEEEEEEEEEEEET
T ss_pred             cceeeeCCEEEEEEeccccccC
Confidence            223457898888876 544444

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.70  E-value=1.9e-05  Score=68.55  Aligned_cols=35  Identities=17%  Similarity=0.159  Sum_probs=24.1

Q ss_pred             eeEeeeeEee---CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           67 LHSEASVSSP---SGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        67 vl~~isl~i~---~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      -|.++||++.   +|.+++|.||+||||||++ +.|...
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~-~~l~~~   49 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVI-NEVYHR   49 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHH-HHHHHH
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHH-HHHHHH
Confidence            3667777776   9999999999999999999 777664

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.67  E-value=1.9e-05  Score=65.74  Aligned_cols=31  Identities=32%  Similarity=0.358  Sum_probs=25.0

Q ss_pred             eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|++.++|.+++|+|++||||||+. +.|+.
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~-~~La~   32 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMA-EMIAA   32 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHH-HHHHH
Confidence            57899999999999999999999999 77754

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.66  E-value=8.8e-05  Score=64.03  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=19.8

Q ss_pred             EeeCceEEEEEcCCCCcHHHHH
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTL   95 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl   95 (280)
                      .+.+|+.+++.||+||||||++
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~   93 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQV   93 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhH
Confidence            3567999999999999999988

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.65  E-value=2.5e-05  Score=66.46  Aligned_cols=29  Identities=31%  Similarity=0.467  Sum_probs=22.6

Q ss_pred             eeeeEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      +.++.+.+| +.+|+|||||||||++ .+|.
T Consensus        16 ~~~i~f~~~-~~~I~G~NgsGKStil-~ai~   44 (203)
T 3qks_A           16 DTVVEFKEG-INLIIGQNGSGKSSLL-DAIL   44 (203)
T ss_dssp             SEEEECCSE-EEEEECCTTSSHHHHH-HHHH
T ss_pred             ceEEEeCCC-eEEEEcCCCCCHHHHH-HHHH
Confidence            345566664 9999999999999999 5553

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.63  E-value=1.1e-05  Score=67.12  Aligned_cols=25  Identities=36%  Similarity=0.371  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAETQ  104 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl~~  104 (280)
                      ++++|+||||||||||+ ++|.++..
T Consensus         3 ~~v~IvG~SGsGKSTL~-~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLI-TRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHH-HHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHHHhh
Confidence            58999999999999999 88888643

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.62  E-value=8.2e-05  Score=62.26  Aligned_cols=23  Identities=30%  Similarity=0.248  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ..+.|.||+|+|||||+ +.++..
T Consensus        55 ~~~~l~G~~GtGKT~la-~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLL-AAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CeEEEECCCCCCHHHHH-HHHHHH
Confidence            67889999999999999 777764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.62  E-value=1.6e-05  Score=77.88  Aligned_cols=30  Identities=27%  Similarity=0.214  Sum_probs=27.1

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ  104 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~  104 (280)
                      .+++|++++|+|+||||||||+ ++|++...
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLa-r~La~~L~  394 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLA-RALAARLM  394 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHH-HHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHH-HHHHHhhc
Confidence            5789999999999999999999 99998643

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.61  E-value=3e-06  Score=77.36  Aligned_cols=49  Identities=18%  Similarity=0.217  Sum_probs=41.9

Q ss_pred             EEcCceEEeCCeeeeEeeeeEeeCceE--EEEEcCCCCcHHHHHHHHHhcch
Q 023563           54 SPRPPLFSLQNRNLHSEASVSSPSGEI--HVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        54 ~~~~ls~~y~~~~vl~~isl~i~~Gei--~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      +.++++..||...+++.++..+..|++  +.|.||+|+||||++ +.+++..
T Consensus        20 rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla-~~la~~l   70 (340)
T 1sxj_C           20 RPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTI-VALAREI   70 (340)
T ss_dssp             CCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHH-HHHHHHH
T ss_pred             CCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHH-HHHHHHH
Confidence            445566677888899999999999998  999999999999999 8888753

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.61  E-value=3.1e-05  Score=63.81  Aligned_cols=26  Identities=27%  Similarity=0.142  Sum_probs=23.0

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+|++++|+|++||||||++ +.|.+.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~-~~L~~~   28 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVS-MALEEY   28 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHH-HHHHHH
Confidence            47999999999999999999 888774

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.60  E-value=1e-05  Score=73.16  Aligned_cols=58  Identities=17%  Similarity=0.114  Sum_probs=44.1

Q ss_pred             EEcCceEEeCCeeeeEe-eeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCC
Q 023563           54 SPRPPLFSLQNRNLHSE-ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSN  115 (280)
Q Consensus        54 ~~~~ls~~y~~~~vl~~-isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~  115 (280)
                      -.+++.+.|++..  ++ ++++.+ |++++++|+||+||||++ ..+++. ...|.++.++..+
T Consensus        76 ~~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~-~~la~~~~~~g~~v~l~~~D  135 (297)
T 1j8m_F           76 VYDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTA-GKLAYFYKKKGFKVGLVGAD  135 (297)
T ss_dssp             HHHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHH-HHHHHHHHHTTCCEEEEECC
T ss_pred             HHHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHH-HHHHHHHHHCCCeEEEEecC
Confidence            3566777777643  56 888877 999999999999999999 666664 4467777776554

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.60  E-value=0.00026  Score=61.20  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=20.6

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ....-+.|.||.|+||||++ +.++.
T Consensus        37 ~~~~~vll~G~~GtGKT~la-~~la~   61 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLA-KAVAT   61 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHH-HHHHH
T ss_pred             CCCceEEEECCCCCCHHHHH-HHHHH
Confidence            34445789999999999999 88776

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.59  E-value=3e-05  Score=65.23  Aligned_cols=22  Identities=27%  Similarity=0.212  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +++|+|||||||||+. +.|+++
T Consensus         4 ~i~l~G~~GsGKST~~-~~La~l   25 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIA-NLFTDL   25 (206)
T ss_dssp             EEEEECSTTSCHHHHH-HHHHTT
T ss_pred             EEEEECCCCCCHHHHH-HHHHHC
Confidence            6899999999999999 988873

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.59  E-value=0.00018  Score=79.36  Aligned_cols=144  Identities=21%  Similarity=0.152  Sum_probs=83.4

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc----cceeeeecccccccccccCchHHHHHHhh
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG----LDSIVTHDGVKLPCCALTTLSSFRQKFGS  150 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~~~~~~~a~  150 (280)
                      +++|+++.|.||.|+|||||++.++......|..+.|+.-.......    .+.  ..+....  .......++.... +
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~a~~lGv--d~~~L~I--~~~~~~e~il~~~-~  454 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGV--DIDNLLC--SQPDTGEQALEIC-D  454 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTC--CTTTCEE--ECCSSHHHHHHHH-H
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHcCC--CHHHeEE--eCCCCHHHHHHHH-H
Confidence            89999999999999999999966666555567777777654322110    000  0001100  0012233333322 2


Q ss_pred             hh--ccCCCEEEEeCccc------------------H-HHHHHHHHHH---HhhcCCEEEEEEechhHhhhccCCc----
Q 023563          151 DA--YDQVDVIGIDEAQF------------------F-EDLYDFCREA---ADHDGKTVIVAGLDGDYLRRSFGSV----  202 (280)
Q Consensus       151 aL--~~~p~lLlLDEP~~------------------~-~~i~~~l~~l---~~~~g~tviivtHdl~~~~~~~~~~----  202 (280)
                      .+  -.+|+++++|.-+.                  + ..+...++++   +++.|++||+++|-...+...|++-    
T Consensus       455 ~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~ps  534 (2050)
T 3cmu_A          455 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT  534 (2050)
T ss_dssp             HHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECS
T ss_pred             HHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCC
Confidence            22  25899999999721                  1 1244455555   5678999999999655443333221    


Q ss_pred             --cccccccceEEEeec-eecccc
Q 023563          203 --IDIIPLADSVTKLTA-RCEFCG  223 (280)
Q Consensus       203 --~~ll~~aD~i~~L~~-~i~~~g  223 (280)
                        .-|-.+||-++.|.. .....|
T Consensus       535 Gg~ale~~ADv~l~L~R~~~~~~g  558 (2050)
T 3cmu_A          535 GGNALKFYASVRLDIRRIGAVKEG  558 (2050)
T ss_dssp             SHHHHHHHEEEEEEEEEEEEEEET
T ss_pred             CcchhhhhCCEEEEEEecccccCC
Confidence              113357888888877 543444

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.58  E-value=3e-05  Score=66.00  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +.+++|+||+||||||++ ++|.+.
T Consensus         5 ~~~i~i~G~~GsGKSTl~-~~L~~~   28 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLC-KAMAEA   28 (227)
T ss_dssp             SCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             CeEEEEECCCCCCHHHHH-HHHHHH
Confidence            568999999999999999 888763

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.57  E-value=2.5e-06  Score=83.36  Aligned_cols=50  Identities=18%  Similarity=0.101  Sum_probs=42.4

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      .+-++++.+.|+...+++++++++ +|++++|+||||+|||||+ +.|++..
T Consensus        83 i~G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtla-r~ia~~l  132 (543)
T 3m6a_A           83 HHGLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLA-KSIAKSL  132 (543)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHH-HHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHH-HHHHHhc
Confidence            344667777777777889999999 8999999999999999999 9998864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.57  E-value=2e-05  Score=74.88  Aligned_cols=56  Identities=20%  Similarity=0.214  Sum_probs=43.5

Q ss_pred             EcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCC
Q 023563           55 PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSN  115 (280)
Q Consensus        55 ~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~  115 (280)
                      .+++++.|++..  ++++|+  +|++++++|||||||||++ ..++++ ...|.++..+..+
T Consensus        79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~-~~LA~~l~~~g~~Vllvd~D  135 (425)
T 2ffh_A           79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTA-AKLALYYKGKGRRPLLVAAD  135 (425)
T ss_dssp             HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHH-HHHHHHHHTTTCCEEEEECC
T ss_pred             HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEeecc
Confidence            456777887654  678888  8999999999999999999 777765 3457777766543

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.54  E-value=6.5e-05  Score=69.63  Aligned_cols=43  Identities=16%  Similarity=0.311  Sum_probs=31.0

Q ss_pred             cEEEcCceE-EeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHH
Q 023563           52 MVSPRPPLF-SLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        52 ~l~~~~ls~-~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l   99 (280)
                      |+.+..|+. .|+.   +++..+++.+| +.+|+|||||||||++ -.|
T Consensus         2 ~M~l~~L~l~nFr~---~~~~~i~f~~g-l~vi~G~NGaGKT~il-eAI   45 (371)
T 3auy_A            2 SMILKEIRMNNFKS---HVNSRIKFEKG-IVAIIGENGSGKSSIF-EAV   45 (371)
T ss_dssp             CEEEEEEEEEEETT---EEEEEEECCSE-EEEEEECTTSSHHHHH-HHH
T ss_pred             CcEEeEEEEEcccc---ccceEEecCCC-eEEEECCCCCCHHHHH-HHH
Confidence            345666653 3333   35677888775 9999999999999999 443

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.52  E-value=7e-06  Score=76.18  Aligned_cols=44  Identities=14%  Similarity=0.135  Sum_probs=36.3

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+.++|++..|+++.++++++|+|      +|+|++|+|||||+ +.|.+.
T Consensus        17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLl-n~L~~~   60 (361)
T 2qag_A           17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLI-NSLFLT   60 (361)
T ss_dssp             ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHH-HHHTTC
T ss_pred             eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHH-HHHhCC
Confidence            689999999999888999999988      99999999999999 877664

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.52  E-value=3.7e-05  Score=64.90  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=23.1

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ...+|.+++|+||+||||||++ +.|..
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~-~~L~~   34 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLI-KKVLS   34 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHH-HHHHH
T ss_pred             ccccCCEEEEECCCCCCHHHHH-HHHHH
Confidence            3578999999999999999999 76654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.50  E-value=4.3e-05  Score=63.60  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcch
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      .++|+|+||||||||+ +.+.|..
T Consensus        31 kv~lvG~~g~GKSTLl-~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLL-SRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHHSC
T ss_pred             EEEEECcCCCCHHHHH-HHHhcCC
Confidence            6899999999999999 8888753

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.49  E-value=4.4e-05  Score=67.99  Aligned_cols=41  Identities=15%  Similarity=0.143  Sum_probs=30.4

Q ss_pred             CCeeeeEeeeeEeeCc-----------eEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563           63 QNRNLHSEASVSSPSG-----------EIHVIVGPMFAGKTTTLLRRIQAETQ  104 (280)
Q Consensus        63 ~~~~vl~~isl~i~~G-----------ei~~liGpNGsGKSTLl~~~l~gl~~  104 (280)
                      |...+++.+...+..+           ..+.|.||+|+||||++ +.+++...
T Consensus        21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la-~~la~~~~   72 (311)
T 4fcw_A           21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA-KTLAATLF   72 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH-HHHHHHHc
Confidence            4444555555555554           68999999999999999 88887543

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.47  E-value=0.00027  Score=67.29  Aligned_cols=121  Identities=10%  Similarity=0.129  Sum_probs=66.8

Q ss_pred             eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeee-cc-----ccccc--cccc
Q 023563           68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTH-DG-----VKLPC--CALT  139 (280)
Q Consensus        68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~-~~-----~~~~~--~~~~  139 (280)
                      |+.+.--+++|+++.|.|+.|+|||||++.+.......|..+.++.-......-...+... .+     .....  +...
T Consensus       187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~  266 (444)
T 3bgw_A          187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASE  266 (444)
T ss_dssp             HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCS
T ss_pred             HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHH
Confidence            3333334899999999999999999999565555555577888876543221100000000 00     00000  1111


Q ss_pred             CchHHHHHHhhhhccCCCEEEEeCc-ccHHHHHHHHHHHHhhcCCE--EEEEEe
Q 023563          140 TLSSFRQKFGSDAYDQVDVIGIDEA-QFFEDLYDFCREAADHDGKT--VIVAGL  190 (280)
Q Consensus       140 ~l~~~~~~~a~aL~~~p~lLlLDEP-~~~~~i~~~l~~l~~~~g~t--viivtH  190 (280)
                      +...+..  +...+.+.++++.|+| .+..++...++++.++.|..  +|++-+
T Consensus       267 ~~~~l~~--a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~  318 (444)
T 3bgw_A          267 DWGKLSM--AIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDY  318 (444)
T ss_dssp             CHHHHHH--HHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred             HHHHHHH--HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            1111111  1112235678888887 45566777777777666777  777754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.47  E-value=2.3e-05  Score=72.31  Aligned_cols=44  Identities=20%  Similarity=0.200  Sum_probs=33.1

Q ss_pred             EcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           55 PRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        55 ~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ++++.+.|+.   ..+|++++++++   .++|+|++|||||||+ +.+.|.
T Consensus        11 l~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLl-n~l~g~   57 (360)
T 3t34_A           11 IQRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVL-ESIVGK   57 (360)
T ss_dssp             TTTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHH-HHHHTS
T ss_pred             HHHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHH-HHHhCC
Confidence            5566666653   358999999999   8999999999999999 888884

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.47  E-value=5e-05  Score=63.69  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|+|+|||||||++ +.|++
T Consensus         3 ~i~i~G~~GsGKSTl~-~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVA-QMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCcCHHHHH-HHHHH
Confidence            6899999999999999 88887

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.45  E-value=0.00017  Score=58.42  Aligned_cols=40  Identities=15%  Similarity=0.069  Sum_probs=27.0

Q ss_pred             cCCCEEEEeCcccH---------HHHHHHHHHHHhhcCCEEEEEEechh
Q 023563          154 DQVDVIGIDEAQFF---------EDLYDFCREAADHDGKTVIVAGLDGD  193 (280)
Q Consensus       154 ~~p~lLlLDEP~~~---------~~i~~~l~~l~~~~g~tviivtHdl~  193 (280)
                      .++.+|++||....         .++.+.+..+....+..+|++|...+
T Consensus       114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~  162 (195)
T 1jbk_A          114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE  162 (195)
T ss_dssp             TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred             CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence            46779999999432         23456666666554677888887665

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.44  E-value=5.7e-05  Score=62.98  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcch
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      .++|+|+||||||||+ +.+.|..
T Consensus         7 kv~lvG~~g~GKSTLl-~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLL-SRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHH-HHHHHSC
T ss_pred             EEEEECcCCCCHHHHH-HHHhcCC
Confidence            5799999999999999 8888753

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.43  E-value=0.00078  Score=57.34  Aligned_cols=129  Identities=21%  Similarity=0.258  Sum_probs=68.9

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcc-c-------ccccceeeeecccccccccccC----chH
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKD-T-------RYGLDSIVTHDGVKLPCCALTT----LSS  143 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~-~-------~~~~~~v~~~~~~~~~~~~~~~----l~~  143 (280)
                      ++| .+-+.++||-||||..+-+.....-.|.++.++..... .       ...+..-+...+.-+. +...+    ...
T Consensus        27 ~~g-~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~-~~~~~~~~~~~~  104 (196)
T 1g5t_A           27 ERG-IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFT-WETQNREADTAA  104 (196)
T ss_dssp             CCC-CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCC-CCGGGHHHHHHH
T ss_pred             cCc-eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccc-cCCCCcHHHHHH
Confidence            344 66688999999999993333333446777777632211 0       0001100001110000 00000    011


Q ss_pred             HHHHH--hhhhc--cCCCEEEEeCcccH--------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccce
Q 023563          144 FRQKF--GSDAY--DQVDVIGIDEAQFF--------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADS  211 (280)
Q Consensus       144 ~~~~~--a~aL~--~~p~lLlLDEP~~~--------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~  211 (280)
                      ....+  ++..+  .+.++|||||....        .+++++|.+--  .+..||+++.+...         +|+++||.
T Consensus       105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp--~~~~vIlTGr~ap~---------~l~e~AD~  173 (196)
T 1g5t_A          105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARP--GHQTVIITGRGCHR---------DILDLADT  173 (196)
T ss_dssp             HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC--TTCEEEEECSSCCH---------HHHHHCSE
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc--CCCEEEEECCCCcH---------HHHHhCcc
Confidence            11111  23334  67999999999443        34555554322  27889999988653         34579999


Q ss_pred             EEEeec
Q 023563          212 VTKLTA  217 (280)
Q Consensus       212 i~~L~~  217 (280)
                      |.-|+.
T Consensus       174 VTem~~  179 (196)
T 1g5t_A          174 VSELRP  179 (196)
T ss_dssp             EEECCC
T ss_pred             eeeecc
Confidence            999987

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.41  E-value=1.8e-05  Score=66.35  Aligned_cols=41  Identities=22%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             eEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           59 LFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        59 s~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|++ ..+++++|++.+++. ++|+|++|+|||||+ +.+.+
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi-~~l~~   47 (198)
T 1f6b_A            6 DWIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLL-HMLKD   47 (198)
T ss_dssp             -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHH-HHHSC
T ss_pred             HHHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHH-HHHhc
Confidence            345655 368899999998885 689999999999999 77765

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.39  E-value=7.2e-05  Score=67.37  Aligned_cols=27  Identities=22%  Similarity=0.160  Sum_probs=23.8

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      .++.++||.||+|||||||+ +.|.++.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla-~~L~~~l   55 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTS-IQIYNHL   55 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence            56889999999999999999 8887764

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.39  E-value=0.00021  Score=65.46  Aligned_cols=27  Identities=15%  Similarity=0.197  Sum_probs=23.0

Q ss_pred             eEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        73 l~i~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      --+++|.++.|.||.|+|||||. ..++
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLA-lqlA  144 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLV-HALG  144 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHH-HHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHH-HHHH
Confidence            35888999999999999999999 4443

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.37  E-value=0.00018  Score=65.36  Aligned_cols=26  Identities=19%  Similarity=0.165  Sum_probs=21.4

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ..+..+.|.||.|+||||++ +.+...
T Consensus        42 ~~~~~vll~G~~G~GKT~l~-~~~~~~   67 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVA-RLVLRR   67 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHH-HHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHH-HHHHHH
Confidence            45668899999999999999 766653

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.37  E-value=4.5e-05  Score=64.05  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|.||.|+|||||+ +.+..
T Consensus        47 ~~ll~G~~G~GKT~l~-~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIA-RLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            7899999999999999 76655

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.35  E-value=0.00011  Score=60.54  Aligned_cols=25  Identities=32%  Similarity=0.476  Sum_probs=21.5

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+|.+++|+|++||||||+. +.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~-~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQA-SRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            46889999999999999999 77763

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.32  E-value=0.0001  Score=60.97  Aligned_cols=39  Identities=26%  Similarity=0.289  Sum_probs=28.9

Q ss_pred             eEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEe
Q 023563           73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVI  112 (280)
Q Consensus        73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~  112 (280)
                      +...+|.+++|+|++||||||++ +.++.. ...|..+.++
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~-~~L~~~l~~~~~~~~~~   47 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIA-TRLADLLQKEGYRVEVL   47 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred             cccCCCcEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEe
Confidence            34568999999999999999999 877764 3344444443

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.32  E-value=0.00019  Score=58.12  Aligned_cols=40  Identities=18%  Similarity=0.048  Sum_probs=27.4

Q ss_pred             cCCCEEEEeCcccH----------HHHHHHHHHHHhhcCCEEEEEEechh
Q 023563          154 DQVDVIGIDEAQFF----------EDLYDFCREAADHDGKTVIVAGLDGD  193 (280)
Q Consensus       154 ~~p~lLlLDEP~~~----------~~i~~~l~~l~~~~g~tviivtHdl~  193 (280)
                      ..|.+|++||....          .++.+.+..+.++.+..+|+++...+
T Consensus       114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~  163 (187)
T 2p65_A          114 EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSE  163 (187)
T ss_dssp             TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHH
T ss_pred             CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHH
Confidence            46789999998322          34666777766654667777777654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.32  E-value=0.0005  Score=59.14  Aligned_cols=23  Identities=35%  Similarity=0.307  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcch
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      .++|+|++|+|||||+ +.|.|..
T Consensus        31 ~i~lvG~~g~GKStli-n~l~g~~   53 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATG-NSILGRK   53 (239)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHTSC
T ss_pred             EEEEECCCCCCHHHHH-HHHcCCC
Confidence            5789999999999999 8887753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.30  E-value=0.00017  Score=66.43  Aligned_cols=40  Identities=25%  Similarity=0.335  Sum_probs=30.6

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNK  116 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~  116 (280)
                      +++.+++|+|++|||||||+ +.+.|. ...+.++..+..++
T Consensus        72 ~~~~~v~lvG~pgaGKSTLl-n~L~~~~~~~~~~v~V~~~dp  112 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFI-EYFGKMLTERGHKLSVLAVDP  112 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEEECCC
T ss_pred             cCceEEEEEcCCCCCHHHHH-HHHHHHhhhcCCeEEEEeecC
Confidence            45789999999999999999 877775 34556666665543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.27  E-value=0.00012  Score=62.06  Aligned_cols=30  Identities=17%  Similarity=0.211  Sum_probs=25.9

Q ss_pred             eEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      +.+++|.+++|+|++||||||+. +.|.+..
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~-~~l~~~l   49 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLA-VELEHQL   49 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHH-HHHHHHh
Confidence            45678999999999999999999 8887643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.27  E-value=0.00015  Score=59.24  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=21.7

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ++|..++|+|++|+|||||+ +.+.+.
T Consensus         2 ~~~~ki~ivG~~g~GKStLl-~~l~~~   27 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLL-NALAGR   27 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHH-HHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHH-HHHhCC
Confidence            36789999999999999999 877764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.27  E-value=3e-05  Score=71.95  Aligned_cols=36  Identities=14%  Similarity=0.076  Sum_probs=31.4

Q ss_pred             eeeEeeeeEeeCceE--EEEEcCCCCcHHHHHHHHHhcc
Q 023563           66 NLHSEASVSSPSGEI--HVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        66 ~vl~~isl~i~~Gei--~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+++.+++.+++|++  ++|+||+||||||+. ++|++.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~-~~la~~   47 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIA-EELCQI   47 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHH-HHHHHH
Confidence            367788889999998  999999999999999 877763

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.27  E-value=0.00034  Score=67.25  Aligned_cols=143  Identities=13%  Similarity=0.103  Sum_probs=82.3

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCcccc----------ccccee----ee-----------
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKDTR----------YGLDSI----VT-----------  127 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~~~----------~~~~~v----~~-----------  127 (280)
                      -+++|+++.|.|+.|+|||||++.++...... |..+.++.-.....          .++..-    +.           
T Consensus       238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~  317 (503)
T 1q57_A          238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ  317 (503)
T ss_dssp             CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHH
T ss_pred             ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH
Confidence            48999999999999999999995555554444 77777775432210          000000    00           


Q ss_pred             -------ecccc-cccccccCchHHHHHHhhh-hccCCCEEEEeCccc---------H----HHHHHHHHHHHhhcCCEE
Q 023563          128 -------HDGVK-LPCCALTTLSSFRQKFGSD-AYDQVDVIGIDEAQF---------F----EDLYDFCREAADHDGKTV  185 (280)
Q Consensus       128 -------~~~~~-~~~~~~~~l~~~~~~~a~a-L~~~p~lLlLDEP~~---------~----~~i~~~l~~l~~~~g~tv  185 (280)
                             ..... ........+..+..+.... --.+|+++++|=-+.         .    .++...|+.++++.|++|
T Consensus       318 ~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~v  397 (503)
T 1q57_A          318 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVL  397 (503)
T ss_dssp             HHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeE
Confidence                   00000 0000002233333332111 124799999996521         1    146778888899999999


Q ss_pred             EEEEechhHhhh-------------ccCCccccccccceEEEeec
Q 023563          186 IVAGLDGDYLRR-------------SFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       186 iivtHdl~~~~~-------------~~~~~~~ll~~aD~i~~L~~  217 (280)
                      |+++|--. ...             -+.+...|...||-|+.|..
T Consensus       398 i~~~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r  441 (503)
T 1q57_A          398 VVICHLKN-PDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER  441 (503)
T ss_dssp             EEEEECCC-CSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEE
T ss_pred             EEEEcCCc-hhccCccccCCCCChhhhccchHhhecCcEEEEEEe
Confidence            99999975 211             01122334567999999976

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.25  E-value=0.00013  Score=60.48  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=18.8

Q ss_pred             eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+++++|++.++. .++|+|++|+|||||+ +.+.+
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli-~~l~~   45 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLL-HMLKN   45 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHH-HHHHH
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHH-HHHhc
Confidence            4678999998887 5689999999999999 66655

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.25  E-value=0.00011  Score=61.56  Aligned_cols=24  Identities=21%  Similarity=0.183  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ..+++|+|++||||||+. +.|.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla-~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVG-EAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHH-HHHHHH
T ss_pred             CeEEEEECCCCCCHHHHH-HHHHHH
Confidence            458999999999999999 877653

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.24  E-value=0.00088  Score=61.59  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ...-+.|.||.|+|||||+ +.++.
T Consensus       116 ~~~~vLl~GppGtGKT~la-~aia~  139 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIG-KCIAS  139 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHH-HHHHH
T ss_pred             CCceEEEECCCCCCHHHHH-HHHHH
Confidence            4567899999999999999 87765

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.22  E-value=0.00096  Score=63.55  Aligned_cols=39  Identities=31%  Similarity=0.359  Sum_probs=29.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN  115 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~  115 (280)
                      ++.+++++|++|+||||++.++..-+...|.++..+..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D  137 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD  137 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            468999999999999999944443445567788776544

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.21  E-value=0.0018  Score=58.71  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=21.4

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+..-+.|.||.|+|||||+ +.++..
T Consensus        43 ~~~~~iLL~GppGtGKT~la-~ala~~   68 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLA-KAVATE   68 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHH-HHHHHH
T ss_pred             CCCceEEEECCCCccHHHHH-HHHHHH
Confidence            34456889999999999999 888763

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.19  E-value=0.00014  Score=65.63  Aligned_cols=26  Identities=27%  Similarity=0.325  Sum_probs=22.2

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++.+++|+|++|+|||||+ +.+.|.
T Consensus         6 ~r~~~VaIvG~~nvGKSTLl-n~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLL-NKLLGQ   31 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHH-HHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHH-HHHHCC
Confidence            34558999999999999999 888775

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.18  E-value=0.00088  Score=56.95  Aligned_cols=42  Identities=17%  Similarity=0.187  Sum_probs=27.5

Q ss_pred             CCCEEEEeCcccH-------H---HHHHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563          155 QVDVIGIDEAQFF-------E---DLYDFCREAADHDGKTVIVAGLDGDYLRR  197 (280)
Q Consensus       155 ~p~lLlLDEP~~~-------~---~i~~~l~~l~~~~g~tviivtHdl~~~~~  197 (280)
                      +..+|++||.+..       .   +++..+..... .+..+|++|++.+.+..
T Consensus        87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~-~~~~iil~tq~~~~l~~  138 (199)
T 2r2a_A           87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRH-QGIDIFVLTQGPKLLDQ  138 (199)
T ss_dssp             TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTT-TTCEEEEEESCGGGBCH
T ss_pred             CceEEEEEChhhhccCccccchhHHHHHHHHhcCc-CCeEEEEECCCHHHHhH
Confidence            5889999999442       1   23333433333 48899999999765543

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.17  E-value=0.00012  Score=66.25  Aligned_cols=39  Identities=21%  Similarity=0.204  Sum_probs=27.9

Q ss_pred             CCeeeeEeeeeEeeCc--eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           63 QNRNLHSEASVSSPSG--EIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        63 ~~~~vl~~isl~i~~G--ei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      |...+++.+.-.+..|  ..+.|.||+|+||||++ +.+++.
T Consensus        41 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la-~~la~~   81 (353)
T 1sxj_D           41 AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTI-LALTKE   81 (353)
T ss_dssp             SCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH-HHHHHH
Confidence            3444455555555555  34899999999999999 877764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.17  E-value=0.00019  Score=62.00  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=22.6

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      =.+|.+++|+|++||||||+. +.|++
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~-~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVA-KIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHH-HHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence            367889999999999999999 87765

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.17  E-value=0.00031  Score=58.36  Aligned_cols=37  Identities=27%  Similarity=0.455  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN  115 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~  115 (280)
                      .+++|+|++|||||||+.+++..+...|.+++.+...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~   41 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH   41 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence            3789999999999999944444445566677666543

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.16  E-value=0.00095  Score=64.34  Aligned_cols=26  Identities=23%  Similarity=0.226  Sum_probs=21.3

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++...-+.|.||+|+|||+++ +.++.
T Consensus       235 ~~~~~~vLL~GppGtGKT~lA-raia~  260 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIA-RAVAN  260 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCCCcEEEECcCCCCHHHHH-HHHHH
Confidence            344456889999999999999 88865

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.16  E-value=0.00029  Score=58.70  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=24.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEec
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIK  113 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~  113 (280)
                      .+++|+||+|||||||+ +.+.+. ...|..++.+.
T Consensus         7 ~~i~i~G~sGsGKTTl~-~~l~~~l~~~g~~v~~i~   41 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLL-KKLIPALCARGIRPGLIK   41 (174)
T ss_dssp             CEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEEeCCCCCHHHHH-HHHHHhccccCCceeEEe
Confidence            58999999999999999 666553 34455555443

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.00063  Score=64.07  Aligned_cols=30  Identities=27%  Similarity=0.481  Sum_probs=23.4

Q ss_pred             eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+.+.-++|  +.|.||.|+|||+|. +.+++.
T Consensus       176 ~~gi~~prG--vLL~GPPGTGKTllA-kAiA~e  205 (405)
T 4b4t_J          176 SLGIAQPKG--VILYGPPGTGKTLLA-RAVAHH  205 (405)
T ss_dssp             HHTCCCCCC--EEEESCSSSSHHHHH-HHHHHH
T ss_pred             hCCCCCCCc--eEEeCCCCCCHHHHH-HHHHHh
Confidence            334445555  779999999999999 988873

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.00077  Score=64.12  Aligned_cols=102  Identities=20%  Similarity=0.188  Sum_probs=54.7

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ  155 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~  155 (280)
                      ++-.=+.|.||.|+|||+|. +.+++..  +..+..+....        ++.       ...-.....+...+..|-...
T Consensus       213 ~~prGvLL~GPPGtGKTllA-kAiA~e~--~~~~~~v~~s~--------l~s-------k~~Gese~~ir~~F~~A~~~~  274 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLA-KAVAATI--GANFIFSPASG--------IVD-------KYIGESARIIREMFAYAKEHE  274 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHH-HHHHHHH--TCEEEEEEGGG--------TCC-------SSSSHHHHHHHHHHHHHHHSC
T ss_pred             CCCCeEEEECCCCCcHHHHH-HHHHHHh--CCCEEEEehhh--------hcc-------ccchHHHHHHHHHHHHHHhcC
Confidence            33344789999999999999 8888732  22222221110        000       000011112233334455578


Q ss_pred             CCEEEEeCccc----------------HHHHHHHHHHHH---hhcCCEEEEEEechhHh
Q 023563          156 VDVIGIDEAQF----------------FEDLYDFCREAA---DHDGKTVIVAGLDGDYL  195 (280)
Q Consensus       156 p~lLlLDEP~~----------------~~~i~~~l~~l~---~~~g~tviivtHdl~~~  195 (280)
                      |.||++||--+                ...+..+|..+-   ...+..||.+|..++.+
T Consensus       275 P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L  333 (437)
T 4b4t_L          275 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL  333 (437)
T ss_dssp             SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred             CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence            99999999811                011334444442   22356788899877644

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.12  E-value=0.00026  Score=57.73  Aligned_cols=23  Identities=26%  Similarity=0.393  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      |.++.|.|++||||||+. +.|..
T Consensus         3 ~~~i~l~G~~GsGKST~a-~~La~   25 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIV-RCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             ceEEEEECCCCCCHHHHH-HHHHH
Confidence            568999999999999999 77765

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.10  E-value=0.00025  Score=57.20  Aligned_cols=21  Identities=19%  Similarity=0.335  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|.||+||||||+. +.|..
T Consensus         3 ~i~l~G~~GsGKsT~~-~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVA-AKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            6899999999999999 77754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.09  E-value=0.0011  Score=73.36  Aligned_cols=124  Identities=22%  Similarity=0.179  Sum_probs=74.4

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccccee--eeecccccccccccCchHHHHHHhhh
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSI--VTHDGVKLPCCALTTLSSFRQKFGSD  151 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~l~~~~~~~a~a  151 (280)
                      =+++|+++.|.|++|+|||||++.+.......+..+.|+.-......-...-  +...+....  ...++.++..+. +.
T Consensus       728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~--~~~~i~~i~~~~-r~  804 (2050)
T 3cmu_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCS--QPDTGEQALEIC-DA  804 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEE--CCSSHHHHHHHH-HH
T ss_pred             CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEe--cCCCHHHHHHHH-HH
Confidence            3889999999999999999999555444444566777776543322110000  000111110  112333333332 22


Q ss_pred             hc--cCCCEEEEeCcc---c------------H-------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccC
Q 023563          152 AY--DQVDVIGIDEAQ---F------------F-------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFG  200 (280)
Q Consensus       152 L~--~~p~lLlLDEP~---~------------~-------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~  200 (280)
                      +.  ..|+++++|+-+   .            +       ..+...|+.++++.+++||+++|-.......|+
T Consensus       805 l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e~~fg  877 (2050)
T 3cmu_A          805 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG  877 (2050)
T ss_dssp             HHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred             HhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccchhhcC
Confidence            21  479999999941   0            0       124457788888889999999998776666564

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.00086  Score=63.63  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .=+.|.||.|+|||+|+ +.+++.
T Consensus       207 rGiLL~GPPGtGKT~la-kAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLV-KAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHH-HHHHHH
T ss_pred             ceEEEECCCCCCHHHHH-HHHHHH
Confidence            34889999999999999 888873

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.08  E-value=0.0014  Score=60.25  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +..-+.|.||.|+|||||+ +.++..
T Consensus        83 ~~~~iLL~GppGtGKT~la-~ala~~  107 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLA-KAVATE  107 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHH-HHHHHH
T ss_pred             CCceEEEECCCCCcHHHHH-HHHHHH
Confidence            3345789999999999999 877763

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.06  E-value=0.00032  Score=57.80  Aligned_cols=25  Identities=20%  Similarity=0.313  Sum_probs=21.6

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++.++.|.|++||||||+. +.|..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~-~~L~~   27 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLS-QALAT   27 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            46789999999999999999 76654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.05  E-value=0.00068  Score=61.30  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=25.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcc-h-hCCeeEEEe
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAE-T-QKGRNVAVI  112 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl-~-~~g~~i~~~  112 (280)
                      +.-+.|.||.|+|||+|+ ..++.. . ..|..+.++
T Consensus       152 ~~~lll~G~~GtGKT~La-~aia~~~~~~~g~~v~~~  187 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLL-AAMAHELSEKKGVSTTLL  187 (308)
T ss_dssp             CCEEEEECSTTSSHHHHH-HHHHHHHHHHSCCCEEEE
T ss_pred             CceEEEECCCCCCHHHHH-HHHHHHHHHhcCCcEEEE
Confidence            578899999999999999 777653 2 345555444

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.04  E-value=0.00032  Score=56.28  Aligned_cols=19  Identities=21%  Similarity=0.273  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 023563           80 IHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l   99 (280)
                      +++|.||+||||||+. +.|
T Consensus         3 ~I~l~G~~GsGKsT~a-~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFA-KLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHH-HHH
Confidence            7899999999999999 777

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.01  E-value=0.0014  Score=59.11  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +..-+.|.||.|+|||+|+ +.++..
T Consensus        50 ~~~~vLl~GppGtGKT~la-~aia~~   74 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLA-KAVATE   74 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHH-HHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHH-HHHHHH
Confidence            3456889999999999999 888663

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.00  E-value=0.0043  Score=57.44  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++.-+.|.||.|+|||+++ +.++.
T Consensus       147 ~~~~vLL~GppGtGKT~la-~aia~  170 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLA-KAVAA  170 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHH-HHHHH
T ss_pred             CCceEEEECCCCCCHHHHH-HHHHH
Confidence            3567899999999999999 87765

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.00  E-value=0.0029  Score=55.37  Aligned_cols=25  Identities=16%  Similarity=0.141  Sum_probs=20.9

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++.++.|.|++||||||+. +.|..
T Consensus         2 ~~~~lIvl~G~pGSGKSTla-~~La~   26 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFS-KNLAK   26 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHH-HHHHH
Confidence            35678999999999999999 77664

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.98  E-value=0.00039  Score=57.05  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      |.++.|.||+||||||+. +.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~-~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSS-QLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHH-HHHHH
T ss_pred             CeEEEEECCCCCCHHHHH-HHHHH
Confidence            678999999999999999 77654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.98  E-value=0.00093  Score=63.41  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .=+.|.||.|+|||+|. +.+++.
T Consensus       217 rGvLLyGPPGTGKTlLA-kAiA~e  239 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLA-KAVANQ  239 (437)
T ss_dssp             SEEEEESSTTTTHHHHH-HHHHHH
T ss_pred             CCCceECCCCchHHHHH-HHHHHH
Confidence            34889999999999999 988873

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.00084  Score=63.83  Aligned_cols=27  Identities=26%  Similarity=0.230  Sum_probs=21.6

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +++-.=+.|.||.|+|||+|. +.+++.
T Consensus       212 ~~~prGvLLyGPPGTGKTllA-kAiA~e  238 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLA-RACAAQ  238 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHH-HHHHHH
T ss_pred             CCCCCeeEEECcCCCCHHHHH-HHHHHH
Confidence            333445789999999999999 988873

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.95  E-value=0.00025  Score=62.02  Aligned_cols=27  Identities=37%  Similarity=0.187  Sum_probs=23.9

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ...++.++.|+||+||||||+. +.|..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla-~~L~~   54 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIH-RIKQK   54 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHH-HHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            5678899999999999999999 77765

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.93  E-value=0.00042  Score=60.77  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+++|+||||||||||. +.|+.
T Consensus         2 ~li~I~G~~GSGKSTla-~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMA-IQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHH-HHHHH
T ss_pred             eEEEEECCCCcCHHHHH-HHHHh
Confidence            37899999999999999 77764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.92  E-value=0.00047  Score=56.20  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|++|+|||||+ +.+.+
T Consensus         9 ~i~lvG~~gvGKStL~-~~l~~   29 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIF-NALTG   29 (188)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHT
T ss_pred             EEEEECCCCCCHHHHH-HHHhC
Confidence            6899999999999999 77776

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.91  E-value=0.0015  Score=54.04  Aligned_cols=21  Identities=29%  Similarity=0.289  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|.||.|+||||++ +.+..
T Consensus        40 ~~ll~G~~G~GKT~l~-~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATA-IALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHH-HHHHH
T ss_pred             eEEEECCCCCCHHHHH-HHHHH
Confidence            3899999999999999 66654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.88  E-value=0.00059  Score=57.75  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+-+++|.|++||||||+. +.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~-~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVA-NAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHH-HHHHH
T ss_pred             CceEEEEECCCCCCHHHHH-HHHHH
Confidence            4568999999999999999 88876

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.88  E-value=0.0034  Score=59.51  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=21.5

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+..-+.|.||.|+|||||+ +.++..
T Consensus       165 ~~~~~vLL~GppGtGKT~lA-~aia~~  190 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLA-KAVATE  190 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHH-HHHHHH
Confidence            34457889999999999999 888764

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.87  E-value=0.00016  Score=63.21  Aligned_cols=30  Identities=27%  Similarity=0.458  Sum_probs=23.4

Q ss_pred             EeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           69 SEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        69 ~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++.+..+.|  +.|.||+|+|||||+ +.++.
T Consensus        37 ~~~~~~~~~~--vll~G~~GtGKT~la-~~la~   66 (268)
T 2r62_A           37 ANLGAKIPKG--VLLVGPPGTGKTLLA-KAVAG   66 (268)
T ss_dssp             HHHSCCCCSC--CCCBCSSCSSHHHHH-HHHHH
T ss_pred             HHCCCCCCce--EEEECCCCCcHHHHH-HHHHH
Confidence            3444555666  779999999999999 88876

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.87  E-value=0.00033  Score=57.44  Aligned_cols=24  Identities=21%  Similarity=0.061  Sum_probs=21.0

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      ..+.++.|+|++||||||+. +.+.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~-~~l~   32 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLG-KELA   32 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHH-HHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHH-HHHH
Confidence            46778999999999999999 7775

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.86  E-value=0.00052  Score=56.31  Aligned_cols=22  Identities=36%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|++|+|||||+ +.+.+.
T Consensus         4 kv~ivG~~gvGKStLl-~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLL-QQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHH-HHHTCC
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            4789999999999999 878774

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.85  E-value=0.00057  Score=56.62  Aligned_cols=21  Identities=33%  Similarity=0.320  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|.|++||||||+. +.|+.
T Consensus         2 ~I~i~G~~GsGKsT~~-~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTIS-AEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHH
T ss_pred             EEEEECCCccCHHHHH-HHHHH
Confidence            6899999999999999 77765

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.85  E-value=0.0027  Score=55.59  Aligned_cols=26  Identities=27%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ....-+.|.||.|+||||++ +.++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la-~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALA-AKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHH-HHHHHH
Confidence            34457889999999999999 877663

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.84  E-value=0.00059  Score=56.03  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.++.|+||+||||||+. +.|+.
T Consensus         5 ~~~i~l~G~~GsGKst~a-~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVG-SQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCEEEEECCCCCCHHHHH-HHHHH
Confidence            568999999999999999 77753

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.84  E-value=0.0014  Score=58.59  Aligned_cols=23  Identities=22%  Similarity=0.039  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ..+.|.||.|+|||+|. +.++..
T Consensus        37 ~~lLl~GppGtGKT~la-~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQC-ELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHH-HHHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHHH
Confidence            46778899999999999 887763

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.84  E-value=0.00063  Score=56.57  Aligned_cols=24  Identities=33%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +|-+++|.|+.||||||+. +.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~~-~~L~~   26 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQC-MNIME   26 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHH-HHHHH
Confidence            6789999999999999999 77765

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.83  E-value=0.0072  Score=54.32  Aligned_cols=21  Identities=33%  Similarity=0.267  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|.||.|+||||++ +.++.
T Consensus        57 ~vll~G~~GtGKT~la-~~ia~   77 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLA-NIISY   77 (338)
T ss_dssp             CEEEECSTTSSHHHHH-HHHHH
T ss_pred             eEEEECcCCCCHHHHH-HHHHH
Confidence            5789999999999999 87755

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.81  E-value=0.00043  Score=68.07  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=27.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEecCC
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVIKSN  115 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~~~~  115 (280)
                      .+.++.|.||.|+||||++ +.+.. +...|..+.+..+.
T Consensus       203 ~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~g~~Vl~~ApT  241 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTT-KAVADLAESLGLEVGLCAPT  241 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEESS
T ss_pred             hCCEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEecCc
Confidence            4679999999999999999 54444 34466666665443

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.81  E-value=0.00065  Score=55.09  Aligned_cols=22  Identities=32%  Similarity=0.305  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++.|.|++||||||+. +.|..
T Consensus         3 ~~I~i~G~~GsGKST~a-~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWA-REFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHH-HHHHH
T ss_pred             eEEEEecCCCCCHHHHH-HHHHh
Confidence            47899999999999999 77664

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.81  E-value=0.00073  Score=56.02  Aligned_cols=24  Identities=25%  Similarity=0.185  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ..+++|.|++||||||+. +.|+..
T Consensus         8 ~~~I~i~G~~GsGKST~~-~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVA-ALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHH-HHHHHT
T ss_pred             ceEEEEECCCCCCHHHHH-HHHHHC
Confidence            458999999999999999 888763

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.80  E-value=0.00054  Score=55.97  Aligned_cols=21  Identities=33%  Similarity=0.368  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|+||+||||||+. +.|+.
T Consensus         6 ~i~i~G~~GsGKsTla-~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLA-RALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHH-HHHHH
T ss_pred             EEEEEcCCCCCHHHHH-HHHHH
Confidence            5889999999999999 77764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.80  E-value=0.00077  Score=56.14  Aligned_cols=24  Identities=17%  Similarity=0.206  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +|.+++|.|+.||||||+. +.|..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~-~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQA-TLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHH-HHHHH
Confidence            4778999999999999999 77755

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.79  E-value=0.0088  Score=52.88  Aligned_cols=25  Identities=20%  Similarity=0.080  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+..+.|.||.|+||||++ +.++..
T Consensus        66 ~~~~vll~G~~GtGKT~la-~~la~~   90 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVA-LKMAGL   90 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHH-HHHHHH
T ss_pred             CCceEEEECCCCCCHHHHH-HHHHHH
Confidence            4457899999999999999 777654

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.79  E-value=0.00064  Score=60.87  Aligned_cols=26  Identities=23%  Similarity=0.133  Sum_probs=21.8

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      -..|.++.|.||+||||||+. +.+..
T Consensus        30 ~~~~~livl~G~sGsGKSTla-~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLR-SAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHH-HHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            456789999999999999999 66643

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.0013  Score=62.98  Aligned_cols=26  Identities=23%  Similarity=0.254  Sum_probs=21.1

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ++-.=+.|.||.|+|||+|. +.+++.
T Consensus       241 ~pprGILLyGPPGTGKTlLA-kAiA~e  266 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCA-RAVANR  266 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHH-HHHHHH
T ss_pred             CCCCceEeeCCCCCcHHHHH-HHHHhc
Confidence            33344779999999999999 988873

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.77  E-value=0.00071  Score=55.80  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=21.6

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++.+++|.|+.||||||+. +.|+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~-~~La~   31 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQC-EKIVQ   31 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHH-HHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHH-HHHHH
Confidence            46789999999999999999 77754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.77  E-value=0.00075  Score=56.46  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=21.9

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+|.+++|.|+.||||||+. +.|..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~-~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQS-KLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHH-HHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHH-HHHHH
Confidence            46889999999999999999 77764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.76  E-value=0.00069  Score=59.11  Aligned_cols=23  Identities=22%  Similarity=0.354  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .-+++|.||+||||||+. +.|+.
T Consensus         9 ~~~i~i~G~~GsGKsTla-~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVS-RGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CeEEEEECCCCCCHHHHH-HHHHH
Confidence            348999999999999999 87763

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.75  E-value=0.00084  Score=55.07  Aligned_cols=23  Identities=30%  Similarity=0.260  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.+++|.|++||||||+. +.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a-~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQC-ARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHH-HHHHH
T ss_pred             ceEEEEECCCCCCHHHHH-HHHHH
Confidence            568999999999999999 66643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.75  E-value=0.0018  Score=61.40  Aligned_cols=42  Identities=24%  Similarity=0.344  Sum_probs=29.9

Q ss_pred             eEeeCc--eEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEecCC
Q 023563           73 VSSPSG--EIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVIKSN  115 (280)
Q Consensus        73 l~i~~G--ei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~~~~  115 (280)
                      |.+.+|  .+++|+|++|+||||++ ..|++ +...|.++.++..+
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla-~~La~~l~~~G~kVllv~~D  136 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTA-AKLARYIQKRGLKPALIAAD  136 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHH-HHHHHHHHHHHCCEEEECCS
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEEecc
Confidence            444434  59999999999999999 55555 34456777776544

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.74  E-value=0.00079  Score=56.37  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=22.0

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ..+|.+++|.|+.||||||+. +.|..
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~-~~L~~   31 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQS-RKLVE   31 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHH-HHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence            457889999999999999999 76654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.72  E-value=0.00073  Score=56.90  Aligned_cols=19  Identities=42%  Similarity=0.606  Sum_probs=16.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 023563           81 HVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~  100 (280)
                      +.|+||||||||||+ +.|.
T Consensus         4 IVi~GPSG~GK~Tl~-~~L~   22 (186)
T 1ex7_A            4 IVISGPSGTGKSTLL-KKLF   22 (186)
T ss_dssp             EEEECCTTSSHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHH-HHHH
Confidence            679999999999999 5443

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.72  E-value=0.0012  Score=60.22  Aligned_cols=23  Identities=22%  Similarity=0.119  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +..+.|.||.|+|||||+ +.+..
T Consensus        45 ~~~vll~G~~G~GKT~la-~~l~~   67 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVS-KYIFN   67 (384)
T ss_dssp             CCEEEEEECTTSSHHHHH-HHHHH
T ss_pred             CCcEEEECCCCCCHHHHH-HHHHH
Confidence            458999999999999999 76665

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.72  E-value=0.00039  Score=58.33  Aligned_cols=32  Identities=31%  Similarity=0.407  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEe
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVI  112 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~  112 (280)
                      +++|.|++||||||++ +.|.... ..|..+..+
T Consensus         2 ~I~i~G~~GsGKsTl~-~~L~~~l~~~g~~v~~~   34 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLV-EKLSGAFRAAGRSVATL   34 (214)
T ss_dssp             EEEEEEEEEEEHHHHH-HHHHHHHHEEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEE
Confidence            6899999999999999 7776532 234444433

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.71  E-value=0.0017  Score=60.27  Aligned_cols=63  Identities=14%  Similarity=0.006  Sum_probs=41.0

Q ss_pred             cCCCEEEEeCccc---------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccC--CccccccccceEEEeec
Q 023563          154 DQVDVIGIDEAQF---------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFG--SVIDIIPLADSVTKLTA  217 (280)
Q Consensus       154 ~~p~lLlLDEP~~---------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~--~~~~ll~~aD~i~~L~~  217 (280)
                      ..|.++++||...         ...+.+++++.++ .|..++++||++..+...=.  ....++.-|+..+++..
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~  334 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQ  334 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSC
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCC
Confidence            3689999999821         1224455555554 59999999999987642000  02356677888777764

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.67  E-value=0.0022  Score=61.95  Aligned_cols=108  Identities=13%  Similarity=0.086  Sum_probs=53.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHH--hhhhccC
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKF--GSDAYDQ  155 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~--a~aL~~~  155 (280)
                      ...+.|.||.|+||||++ +.++...  +..+..+........   .+... . .........+..+....  ......+
T Consensus        77 ~~~lLL~GppGtGKTtla-~~la~~l--~~~~i~in~s~~~~~---~~~~~-~-i~~~~~~~~~~~~~~~~~~~~~~~~~  148 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAA-HLVAQEL--GYDILEQNASDVRSK---TLLNA-G-VKNALDNMSVVGYFKHNEEAQNLNGK  148 (516)
T ss_dssp             CSEEEEECSTTSSHHHHH-HHHHHHT--TCEEEEECTTSCCCH---HHHHH-T-GGGGTTBCCSTTTTTC----CCSSTT
T ss_pred             CcEEEEECCCCCCHHHHH-HHHHHHc--CCCEEEEeCCCcchH---HHHHH-H-HHHHhccccHHHHHhhhhhhhhccCC
Confidence            358899999999999999 8776533  444443332211000   00000 0 00000000011111100  0012357


Q ss_pred             CCEEEEeCccc----HHHHHHHHHHHHhhcCCEEEEEEechh
Q 023563          156 VDVIGIDEAQF----FEDLYDFCREAADHDGKTVIVAGLDGD  193 (280)
Q Consensus       156 p~lLlLDEP~~----~~~i~~~l~~l~~~~g~tviivtHdl~  193 (280)
                      +.+|++||...    ....++.|.++.++.+..+|+++.+..
T Consensus       149 ~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~  190 (516)
T 1sxj_A          149 HFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERN  190 (516)
T ss_dssp             SEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTT
T ss_pred             CeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            89999999922    112234444554444677899988754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.63  E-value=0.001  Score=54.50  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++.|.|++||||||+. +.|..
T Consensus         3 ~I~i~G~~GsGKsT~~-~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVL-AKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            6899999999999999 76654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.63  E-value=0.00068  Score=55.35  Aligned_cols=25  Identities=32%  Similarity=0.357  Sum_probs=16.3

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++.++.|.|++||||||+. +.|..
T Consensus         3 ~~~~~I~l~G~~GsGKST~a-~~La~   27 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTA-HTLHE   27 (183)
T ss_dssp             --CCEEEEECCC----CHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            35678999999999999999 77753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.62  E-value=0.00038  Score=57.63  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=22.0

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++.+.+++|.|+.||||||+. +.|..
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a-~~L~~   34 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQC-EKLVE   34 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHH-HHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHH-HHHHH
Confidence            456779999999999999999 77754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.61  E-value=0.0028  Score=52.44  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|++|+|||||+ +.+.|
T Consensus         8 kv~lvG~~~vGKSsL~-~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLA-NIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            4889999999999999 66654

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.61  E-value=0.0023  Score=65.30  Aligned_cols=99  Identities=22%  Similarity=0.211  Sum_probs=53.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCCCE
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDV  158 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~l  158 (280)
                      .=+.|.||.|+|||+|+ +.+++..  |.....+...        .++.       ...-..-..+...+..|....|.|
T Consensus       239 ~GILL~GPPGTGKT~LA-raiA~el--g~~~~~v~~~--------~l~s-------k~~gese~~lr~lF~~A~~~~PsI  300 (806)
T 3cf2_A          239 RGILLYGPPGTGKTLIA-RAVANET--GAFFFLINGP--------EIMS-------KLAGESESNLRKAFEEAEKNAPAI  300 (806)
T ss_dssp             CEEEEECCTTSCHHHHH-HHHHTTT--TCEEEEEEHH--------HHHS-------SCTTHHHHHHHHHHHHHTTSCSEE
T ss_pred             CeEEEECCCCCCHHHHH-HHHHHHh--CCeEEEEEhH--------Hhhc-------ccchHHHHHHHHHHHHHHHcCCeE
Confidence            34789999999999999 9888732  2221111100        0000       000001112233334455678999


Q ss_pred             EEEeCccc------------HH----HHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563          159 IGIDEAQF------------FE----DLYDFCREAADHDGKTVIVAGLDGDYL  195 (280)
Q Consensus       159 LlLDEP~~------------~~----~i~~~l~~l~~~~g~tviivtHdl~~~  195 (280)
                      |++||--+            ..    .++..+..+....+..||.+|..++.+
T Consensus       301 IfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L  353 (806)
T 3cf2_A          301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI  353 (806)
T ss_dssp             EEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred             EEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence            99999811            11    233344444344466778888776654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.60  E-value=0.004  Score=49.36  Aligned_cols=24  Identities=13%  Similarity=-0.004  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.-+.|.||.|+|||++. +.+..
T Consensus        26 ~~~~vll~G~~GtGKt~lA-~~i~~   49 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVA-RYFHK   49 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHH-GGGCC
T ss_pred             CCCcEEEECCCCccHHHHH-HHHHH
Confidence            3456889999999999999 87765

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.59  E-value=0.01  Score=53.04  Aligned_cols=93  Identities=16%  Similarity=0.126  Sum_probs=48.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhh--hhccCCC
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGS--DAYDQVD  157 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~--aL~~~p~  157 (280)
                      .+.+.||.|+||||++ +.++...  +.++..+.....                   ....+......++.  .+..+++
T Consensus        50 ~~L~~G~~G~GKT~la-~~la~~l--~~~~~~i~~~~~-------------------~~~~i~~~~~~~~~~~~~~~~~~  107 (324)
T 3u61_B           50 IILHSPSPGTGKTTVA-KALCHDV--NADMMFVNGSDC-------------------KIDFVRGPLTNFASAASFDGRQK  107 (324)
T ss_dssp             EEEECSSTTSSHHHHH-HHHHHHT--TEEEEEEETTTC-------------------CHHHHHTHHHHHHHBCCCSSCEE
T ss_pred             EEEeeCcCCCCHHHHH-HHHHHHh--CCCEEEEccccc-------------------CHHHHHHHHHHHHhhcccCCCCe
Confidence            5667788999999999 7776532  333322221100                   00011111111111  1234789


Q ss_pred             EEEEeCcccH--HHHHHHHHHHHhh--cCCEEEEEEechhH
Q 023563          158 VIGIDEAQFF--EDLYDFCREAADH--DGKTVIVAGLDGDY  194 (280)
Q Consensus       158 lLlLDEP~~~--~~i~~~l~~l~~~--~g~tviivtHdl~~  194 (280)
                      +|++||....  .+..+.|.++.++  .+..+|++|.+...
T Consensus       108 vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~  148 (324)
T 3u61_B          108 VIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG  148 (324)
T ss_dssp             EEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred             EEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence            9999999332  3333333333322  26788888887663

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.57  E-value=0.0018  Score=61.68  Aligned_cols=32  Identities=25%  Similarity=0.281  Sum_probs=24.1

Q ss_pred             eeeeEeeCceE--EEEEcCCCCcHHHHHHHHHhcc
Q 023563           70 EASVSSPSGEI--HVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        70 ~isl~i~~Gei--~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+.-.+..|.+  +.|.||.|+||||++ +.|+..
T Consensus        40 ~L~~~i~~~~~~~vLL~GppGtGKTtlA-r~ia~~   73 (447)
T 3pvs_A           40 PLPRAIEAGHLHSMILWGPPGTGKTTLA-EVIARY   73 (447)
T ss_dssp             HHHHHHHHTCCCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             HHHHHHHcCCCcEEEEECCCCCcHHHHH-HHHHHH
Confidence            34444555554  889999999999999 888763

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.56  E-value=0.0039  Score=59.18  Aligned_cols=21  Identities=38%  Similarity=0.531  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|++|+|||||+ +.+.|
T Consensus        25 ~V~lvG~~nvGKSTL~-n~l~~   45 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIF-NRIAG   45 (456)
T ss_dssp             EEEEECSSSSSHHHHH-HHHEE
T ss_pred             EEEEECCCCCcHHHHH-HHHhC
Confidence            6899999999999999 87877

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.53  E-value=0.0014  Score=55.62  Aligned_cols=24  Identities=33%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +|-+++|+|+.||||||+. +.|+.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a-~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQA-PNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCcEEEEECCCCCCHHHHH-HHHHH
Confidence            5678999999999999999 77654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.53  E-value=0.0065  Score=55.13  Aligned_cols=26  Identities=23%  Similarity=0.239  Sum_probs=21.9

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+|..+.|.||.|+||||++ +.++..
T Consensus        68 ~~~~~vLl~GppGtGKT~la-~~la~~   93 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIA-MGMAQA   93 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHH-HHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHH-HHHHHH
Confidence            34668999999999999999 777654

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.53  E-value=0.0034  Score=57.61  Aligned_cols=24  Identities=25%  Similarity=0.174  Sum_probs=19.0

Q ss_pred             CceEEEE--EcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVI--VGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~l--iGpNGsGKSTLl~~~l~g  101 (280)
                      .+..+.|  .||.|+|||||+ +.+..
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~-~~~~~   74 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLA-KFTVK   74 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHH-HHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHH-HHHHH
Confidence            4556777  899999999999 65554

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.49  E-value=0.0013  Score=54.72  Aligned_cols=21  Identities=43%  Similarity=0.651  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|.|++||||||+. +.++.
T Consensus         4 ~i~i~G~~GsGKst~~-~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVA-RRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            8999999999999999 87765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.48  E-value=0.034  Score=44.83  Aligned_cols=109  Identities=19%  Similarity=0.274  Sum_probs=52.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCC
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQV  156 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p  156 (280)
                      +.=.++|+|+.|+|||||+ +.+.+-....    + .+..  ..... .+.........+...+...+.... ...+.+.
T Consensus        17 ~~~~i~v~G~~~~GKssl~-~~l~~~~~~~----~-~~t~--~~~~~-~~~~~~~~~~~~Dt~G~~~~~~~~-~~~~~~~   86 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTIL-KKFNGEDVDT----I-SPTL--GFNIK-TLEHRGFKLNIWDVGGQKSLRSYW-RNYFEST   86 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHH-HHHTTCCCSS----C-CCCS--SEEEE-EEEETTEEEEEEEECCSHHHHTTG-GGGCTTC
T ss_pred             CeeEEEEECCCCCCHHHHH-HHHhcCCCCc----c-cccC--ccceE-EEEECCEEEEEEECCCCHhHHHHH-HHHhcCC
Confidence            3446899999999999999 6665522100    0 0000  00000 011111111222233333332221 2334455


Q ss_pred             CEE--EEe--CcccHHHHHHHHHHHHhh---cCCEEEEEEechhHh
Q 023563          157 DVI--GID--EAQFFEDLYDFCREAADH---DGKTVIVAGLDGDYL  195 (280)
Q Consensus       157 ~lL--lLD--EP~~~~~i~~~l~~l~~~---~g~tviivtHdl~~~  195 (280)
                      +++  ++|  .|.+...+.+.+.++.+.   .+..++++..-.|..
T Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  132 (186)
T 1ksh_A           87 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP  132 (186)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence            544  455  455555555555555432   367888887766643

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.45  E-value=0.0015  Score=55.71  Aligned_cols=25  Identities=32%  Similarity=0.232  Sum_probs=20.2

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++.+++|.|+.||||||+. +.|+.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a-~~La~   29 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVS-SRITT   29 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHH-HHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHH-HHHHH
Confidence            45678999999999999999 77753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.44  E-value=0.0028  Score=54.20  Aligned_cols=35  Identities=26%  Similarity=0.161  Sum_probs=26.0

Q ss_pred             CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHH
Q 023563           63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRR   98 (280)
Q Consensus        63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~   98 (280)
                      .....++..-+.+ .|..+.|+||+|+|||||.+.+
T Consensus        20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~L   54 (205)
T 2qmh_A           20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALEL   54 (205)
T ss_dssp             -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHH
T ss_pred             CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHH
Confidence            3444566666665 5788999999999999999433

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.42  E-value=0.0018  Score=53.89  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=19.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHh
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      ...+++|.|+.||||||+. +.|.
T Consensus        14 ~~~~I~l~G~~GsGKsT~~-~~L~   36 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQC-EKLV   36 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHH-HHHH
T ss_pred             CCcEEEEECCCCCCHHHHH-HHHH
Confidence            3458999999999999999 7665

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.41  E-value=0.0026  Score=57.87  Aligned_cols=36  Identities=25%  Similarity=0.147  Sum_probs=30.1

Q ss_pred             CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHH
Q 023563           63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l   99 (280)
                      .....+++..+.+ .|.-+.|.|+||+||||+.+.++
T Consensus       130 ~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~  165 (314)
T 1ko7_A          130 ARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELI  165 (314)
T ss_dssp             CEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            4457899999998 78999999999999999993333

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.41  E-value=0.0014  Score=55.63  Aligned_cols=24  Identities=25%  Similarity=0.195  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.++.|+||+||||||+. +.|+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~-~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQC-ELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHH-HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHH
Confidence            4567899999999999999 77654

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.40  E-value=0.0017  Score=53.18  Aligned_cols=21  Identities=24%  Similarity=0.268  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|.|+.||||||+. +.+..
T Consensus         2 ~I~l~G~~GsGKsT~~-~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQA-KKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            6899999999999999 77654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.39  E-value=0.0016  Score=57.18  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|++|||||||+ +.+.|.
T Consensus         5 ~i~lvG~~g~GKTTL~-n~l~g~   26 (271)
T 3k53_A            5 TVALVGNPNVGKTTIF-NALTGL   26 (271)
T ss_dssp             EEEEEECSSSSHHHHH-HHHHTT
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            5899999999999999 888775

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.39  E-value=0.0019  Score=53.85  Aligned_cols=24  Identities=29%  Similarity=0.322  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+-+++|.|+.||||||+. +.|..
T Consensus        19 ~~~~I~l~G~~GsGKST~a-~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQA-VKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHH
Confidence            4568999999999999999 77754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.38  E-value=0.0018  Score=52.27  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++++|.|+.||||||+. +.|+.
T Consensus         8 ~~i~l~G~~GsGKSTva-~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLA-QELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHH-HHHHH
T ss_pred             ceEEEECCCCCCHHHHH-HHHHH
Confidence            68999999999999999 77754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.38  E-value=0.002  Score=52.70  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.+++|.|+.||||||+. +.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~-~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQC-ANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHH-HHHHH
T ss_pred             CcEEEEECCCCCCHHHHH-HHHHH
Confidence            468999999999999999 76653

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.37  E-value=0.0018  Score=54.50  Aligned_cols=20  Identities=35%  Similarity=0.267  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~  100 (280)
                      .++|.||.||||||+. +.|.
T Consensus         2 ~I~l~G~~GsGKsT~a-~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQA-EQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHH
Confidence            4789999999999999 7664

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.32  E-value=0.0017  Score=52.43  Aligned_cols=22  Identities=32%  Similarity=0.277  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+++|.|+.||||||+. +.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a-~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVG-RELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHH-HHHHH
T ss_pred             ceEEEECCCCCCHHHHH-HHHHH
Confidence            36899999999999999 77654

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.32  E-value=0.011  Score=60.48  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAETQ  104 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl~~  104 (280)
                      ..+.|+||+|+|||+++ +.++....
T Consensus       589 ~~vLl~Gp~GtGKT~lA-~~la~~~~  613 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELA-KTLAATLF  613 (854)
T ss_dssp             EEEEEBSCSSSSHHHHH-HHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHHHhc
Confidence            47889999999999999 88877543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.31  E-value=0.0018  Score=60.05  Aligned_cols=23  Identities=30%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcch
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      +++|+|++|||||||+ +.+.|..
T Consensus       181 ~V~lvG~~naGKSTLl-n~L~~~~  203 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLF-NSLTGLT  203 (364)
T ss_dssp             EEEEECBTTSSHHHHH-HHHHCC-
T ss_pred             EEEEECCCCCCHHHHH-HHHHCCC
Confidence            4999999999999999 8888853

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.30  E-value=0.0022  Score=51.51  Aligned_cols=21  Identities=24%  Similarity=0.271  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|.|+.||||||+. +.|..
T Consensus         2 ~I~l~G~~GsGKsT~a-~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVG-SLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHH-HHHHH
T ss_pred             eEEEECCCCCCHHHHH-HHHHH
Confidence            5889999999999999 77754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.29  E-value=0.0019  Score=60.97  Aligned_cols=23  Identities=30%  Similarity=0.270  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      -.++|+|+||+|||||+ +.+.|.
T Consensus       181 ~kvaivG~~gvGKSTLl-n~l~g~  203 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLF-NAILNK  203 (439)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHTS
T ss_pred             ceEEEECCCCCCHHHHH-HHHhCC
Confidence            37999999999999999 888875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.29  E-value=0.0021  Score=54.11  Aligned_cols=20  Identities=40%  Similarity=0.278  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~  100 (280)
                      .++|.||.||||||+. +.|+
T Consensus         2 ~I~l~G~~GsGKsT~a-~~L~   21 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQG-ERIV   21 (216)
T ss_dssp             EEEEECSTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHH
Confidence            4789999999999999 7664

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.28  E-value=0.0017  Score=53.28  Aligned_cols=22  Identities=36%  Similarity=0.371  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+++|+|+.||||||+. +.|+.
T Consensus         3 ~~I~l~G~~GsGKsT~a-~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIG-RRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHH-HHHHH
T ss_pred             CeEEEECCCCCCHHHHH-HHHHH
Confidence            46899999999999999 76654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.28  E-value=0.0016  Score=61.14  Aligned_cols=28  Identities=21%  Similarity=0.095  Sum_probs=24.2

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+..|..++|+|+||+|||||+ +.+.|.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~-n~Ltg~   45 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFF-NVLTNS   45 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHH-HHHHC-
T ss_pred             hccCCCEEEEECCCCCCHHHHH-HHHHCC
Confidence            4567888999999999999999 888875

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.28  E-value=0.011  Score=60.35  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .-+.|+||+|+||||++ +.++..
T Consensus       192 ~~vlL~G~pG~GKT~la-~~la~~  214 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIV-EGLAQR  214 (854)
T ss_dssp             CCCEEEECTTSCHHHHH-HHHHHH
T ss_pred             CceEEEcCCCCCHHHHH-HHHHHH
Confidence            45789999999999999 877764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.20  E-value=0.0025  Score=55.44  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      -+++|.|++||||||+. +.|..
T Consensus        23 ~iI~I~G~~GSGKST~a-~~L~~   44 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVC-AKIVQ   44 (252)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEEECCCCCCHHHHH-HHHHH
Confidence            47999999999999999 76654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.20  E-value=0.0026  Score=53.63  Aligned_cols=23  Identities=17%  Similarity=0.226  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .-++||.|+.||||||+. +.+..
T Consensus        12 ~~iIgltG~~GSGKSTva-~~L~~   34 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVC-EILKN   34 (192)
T ss_dssp             EEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             ceEEEEECCCCCCHHHHH-HHHHH
Confidence            458999999999999999 77754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.17  E-value=0.0031  Score=54.71  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=20.6

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      .++-+++|.||.||||||+. +.|.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a-~~L~   50 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQS-LNLK   50 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHH-HHHH
T ss_pred             CCCcEEEEECCCCCCHHHHH-HHHH
Confidence            35678999999999999999 7665

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.16  E-value=0.0081  Score=53.05  Aligned_cols=20  Identities=30%  Similarity=0.316  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.|.||.|+||||++ +.+..
T Consensus        45 ~ll~G~~G~GKt~la-~~l~~   64 (323)
T 1sxj_B           45 MIISGMPGIGKTTSV-HCLAH   64 (323)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECcCCCCHHHHH-HHHHH
Confidence            889999999999999 66654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.16  E-value=0.016  Score=51.41  Aligned_cols=23  Identities=35%  Similarity=0.278  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ...+.|.||.|+||||++ +.++.
T Consensus        38 ~~~vll~G~~GtGKT~la-~~i~~   60 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLA-HVIAH   60 (324)
T ss_dssp             CCCCEEECCTTCCCHHHH-HHHHH
T ss_pred             CCcEEEECCCCCCHHHHH-HHHHH
Confidence            356889999999999999 77765

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.15  E-value=0.018  Score=52.09  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|.||.|+||||++ +.++.
T Consensus        40 ~~ll~G~~G~GKT~la-~~la~   60 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIA-RLLAK   60 (373)
T ss_dssp             EEEEESCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            5889999999999999 77765

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.12  E-value=0.002  Score=62.34  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=30.9

Q ss_pred             CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      |...+++-+-..+..|.-+.|.||.|+|||+|+ +.++...
T Consensus        26 Gq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA-raLa~~l   65 (500)
T 3nbx_X           26 ERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA-RRLKFAF   65 (500)
T ss_dssp             SCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH-HHGGGGB
T ss_pred             HHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH-HHHHHHH
Confidence            444445555566667788999999999999999 9888754

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.11  E-value=0.016  Score=58.28  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcch
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      .+.|.||.|+|||+++ +.++...
T Consensus       490 ~~ll~G~~GtGKT~la-~~la~~l  512 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVT-VQLSKAL  512 (758)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHHH
T ss_pred             EEEEECCCCCcHHHHH-HHHHHHh
Confidence            6889999999999999 8777644

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.11  E-value=0.0029  Score=51.71  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      -.++|+|+.|+|||||+ +.+.+-
T Consensus        49 ~~i~vvG~~g~GKSsll-~~l~~~   71 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLL-TLLTTD   71 (193)
T ss_dssp             CEEEEECCTTSSHHHHH-HHHHHS
T ss_pred             CEEEEECCCCCCHHHHH-HHHhcC
Confidence            37899999999999999 766663

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.10  E-value=0.003  Score=53.86  Aligned_cols=21  Identities=29%  Similarity=0.287  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|.|++||||||+. +.|..
T Consensus         2 ~I~l~G~~GsGKsT~a-~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQG-NLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            5789999999999999 76654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.08  E-value=0.03  Score=56.36  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcch
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      .+.|.||.|+|||++. +.++...
T Consensus       523 ~~Ll~Gp~GtGKT~lA-~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELA-RALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHH-HHHHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHHHh
Confidence            6889999999999999 8887754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.05  E-value=0.003  Score=51.60  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      -.++|+|++|+|||||+ +.+.+
T Consensus        17 ~ki~ivG~~~vGKSsL~-~~l~~   38 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLL-KQLAS   38 (181)
T ss_dssp             EEEEEEESTTSSHHHHH-HHHCC
T ss_pred             eEEEEECCCCCCHHHHH-HHHhc
Confidence            36889999999999999 77765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.04  E-value=0.003  Score=50.00  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.|+|||||+ +.+.+.
T Consensus         4 ki~~vG~~~~GKSsli-~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALA-RIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHH-HHHCCC
T ss_pred             EEEEECCCCCCHHHHH-HHHcCc
Confidence            4789999999999999 777663

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.04  E-value=0.0032  Score=56.00  Aligned_cols=22  Identities=18%  Similarity=0.217  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHh
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      .-+++|.|++||||||+. +.|.
T Consensus        75 ~~iI~I~G~~GSGKSTva-~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVA-QRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHH-HHHH
T ss_pred             CEEEEEECCCCCCHHHHH-HHHH
Confidence            458999999999999999 7776

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.04  E-value=0.007  Score=50.62  Aligned_cols=34  Identities=18%  Similarity=0.083  Sum_probs=24.7

Q ss_pred             eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHH
Q 023563           65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l   99 (280)
                      +..++..-+.+ .|.-+.|.|++|+|||||.+.++
T Consensus         4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~   37 (181)
T 3tqf_A            4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALI   37 (181)
T ss_dssp             CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            34455555554 47789999999999999993333

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.02  E-value=0.0036  Score=49.95  Aligned_cols=22  Identities=23%  Similarity=0.205  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus         6 ki~i~G~~~vGKSsl~-~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLA-SLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHCC
T ss_pred             EEEEECCCCccHHHHH-HHHhcC
Confidence            4789999999999999 767653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.01  E-value=0.0032  Score=49.78  Aligned_cols=21  Identities=29%  Similarity=0.385  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         7 ~i~v~G~~~~GKssl~-~~l~~   27 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMI-QRYCK   27 (168)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHHc
Confidence            4789999999999999 66654

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.99  E-value=0.024  Score=49.09  Aligned_cols=25  Identities=20%  Similarity=0.181  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+.-+.|.||.|+|||+++ +.+...
T Consensus        28 ~~~~vll~G~~GtGKt~la-~~i~~~   52 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIA-SRLHYL   52 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHH-HHHHHT
T ss_pred             CCCCEEEECCCCCcHHHHH-HHHHHh
Confidence            3456789999999999999 888764

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=95.99  E-value=0.0081  Score=59.24  Aligned_cols=19  Identities=47%  Similarity=0.496  Sum_probs=17.6

Q ss_pred             CceEEEEEcCCCCcHHHHH
Q 023563           77 SGEIHVIVGPMFAGKTTTL   95 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl   95 (280)
                      .+.++.|.||.|+||||++
T Consensus       163 ~~~~~vi~G~pGTGKTt~l  181 (608)
T 1w36_D          163 TRRISVISGGPGTGKTTTV  181 (608)
T ss_dssp             TBSEEEEECCTTSTHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHH
Confidence            4789999999999999998

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.98  E-value=0.0034  Score=49.34  Aligned_cols=21  Identities=33%  Similarity=0.419  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++++|+.|+|||||+ +.+.+
T Consensus         3 ki~v~G~~~~GKSsli-~~l~~   23 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLF-NRLLK   23 (161)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhC
Confidence            4789999999999999 66654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.98  E-value=0.0035  Score=49.32  Aligned_cols=21  Identities=19%  Similarity=0.184  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         5 ~i~v~G~~~~GKSsli-~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALT-VQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4789999999999999 55543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.97  E-value=0.0033  Score=49.29  Aligned_cols=21  Identities=24%  Similarity=0.213  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++++|+.|+|||||+ +.+.+
T Consensus         5 ~i~v~G~~~~GKssl~-~~l~~   25 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALT-IQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            4789999999999999 66654

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.97  E-value=0.0035  Score=53.16  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +|-++.|+|+.||||||+. +.|+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~a-~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQC-EFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHH-HHHHH
T ss_pred             CceEEEEECCCCCCHHHHH-HHHHH
Confidence            3567899999999999999 77754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.96  E-value=0.0039  Score=49.37  Aligned_cols=21  Identities=19%  Similarity=0.194  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         5 ~i~v~G~~~~GKssli-~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLV-LRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHT
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4789999999999999 66665

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.92  E-value=0.0039  Score=49.90  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        11 ~i~v~G~~~~GKssl~-~~l~~   31 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLL-LRFAD   31 (181)
T ss_dssp             EEEEECCTTSCHHHHH-HHHCS
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            4789999999999999 77765

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.92  E-value=0.0041  Score=49.36  Aligned_cols=21  Identities=24%  Similarity=0.222  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         4 ki~ivG~~~~GKSsli-~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLA-GTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHC
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            3789999999999999 77765

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.91  E-value=0.004  Score=52.49  Aligned_cols=21  Identities=29%  Similarity=0.341  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|.|+.||||||+. +.|..
T Consensus         2 ~I~l~G~~GsGKsT~a-~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQA-QFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            4789999999999999 76654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.91  E-value=0.0028  Score=51.18  Aligned_cols=24  Identities=42%  Similarity=0.332  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.-.++|+|++|+|||||+ +.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli-~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTIL-YRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHH-HHTCC
T ss_pred             CccEEEEECCCCCCHHHHH-HHHhc
Confidence            3447899999999999999 76654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.91  E-value=0.0038  Score=49.14  Aligned_cols=21  Identities=19%  Similarity=0.156  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++++|+.|+|||||+ +.+.+
T Consensus         6 ~i~v~G~~~~GKssl~-~~l~~   26 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALT-LQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            4789999999999999 66654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.90  E-value=0.0039  Score=49.36  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         8 ~i~v~G~~~~GKSsli-~~l~~   28 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIM-WRFVE   28 (170)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHHc
Confidence            4789999999999999 66655

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.89  E-value=0.0039  Score=49.96  Aligned_cols=21  Identities=29%  Similarity=0.355  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        10 ~i~v~G~~~~GKSsli-~~l~~   30 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLM-HRYVN   30 (182)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            5789999999999999 66654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.89  E-value=0.0039  Score=49.26  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         5 ~i~v~G~~~~GKssli-~~l~~   25 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIV-LRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            4789999999999999 65554

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.88  E-value=0.0038  Score=49.43  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         5 ~i~v~G~~~~GKssli-~~l~~   25 (170)
T 1g16_A            5 KILLIGDSGVGKSCLL-VRFVE   25 (170)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHHh
Confidence            4789999999999999 66655

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.87  E-value=0.0021  Score=57.60  Aligned_cols=24  Identities=21%  Similarity=0.219  Sum_probs=17.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++-++||.||+||||||+. +.+..
T Consensus         4 ~~~iIgItG~sGSGKSTva-~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVK-HTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHH-HHHHH
T ss_pred             CceEEEEECCCCCCHHHHH-HHHHH
Confidence            4568999999999999999 76655

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.87  E-value=0.0045  Score=54.92  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|++|+|||||+ +.+.|.
T Consensus         5 kI~lvG~~nvGKSTL~-n~L~g~   26 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLF-NLITGH   26 (272)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHCC
T ss_pred             EEEEECCCCCCHHHHH-HHHHCC
Confidence            5899999999999999 888774

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.86  E-value=0.0041  Score=49.32  Aligned_cols=21  Identities=29%  Similarity=0.311  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         8 ~i~v~G~~~~GKssli-~~l~~   28 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLV-LRYCE   28 (170)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHHc
Confidence            4789999999999999 66654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.86  E-value=0.0053  Score=49.12  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.-.++|+|+.|+|||||+ +.+.+
T Consensus         7 ~~~~i~v~G~~~~GKssl~-~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLL-DAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHH-HHHHT
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHhC
Confidence            3457899999999999999 66655

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.82  E-value=0.0043  Score=48.96  Aligned_cols=21  Identities=19%  Similarity=0.173  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         5 ki~v~G~~~~GKssli-~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALT-VQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4789999999999999 65554

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.82  E-value=0.0043  Score=49.63  Aligned_cols=21  Identities=19%  Similarity=0.297  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         9 ~i~v~G~~~~GKSsli-~~l~~   29 (177)
T 1wms_A            9 KVILLGDGGVGKSSLM-NRYVT   29 (177)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4789999999999999 66654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.82  E-value=0.005  Score=54.52  Aligned_cols=22  Identities=32%  Similarity=0.305  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++.|.|++||||||+. +.|..
T Consensus         3 ~~I~l~G~~GsGKST~a-~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWA-REFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHH-HHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHH
Confidence            47899999999999999 76653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.81  E-value=0.0053  Score=52.58  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+..+.|+|+.||||||+. +.|+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a-~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQA-PKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHH
Confidence            3457899999999999999 77754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.80  E-value=0.0044  Score=49.61  Aligned_cols=21  Identities=24%  Similarity=0.154  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        11 ~i~v~G~~~~GKssli-~~l~~   31 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALT-IQFIQ   31 (181)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            5789999999999999 66655

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.80  E-value=0.0047  Score=50.42  Aligned_cols=21  Identities=14%  Similarity=0.216  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        25 ~i~v~G~~~~GKSsli-~~l~~   45 (195)
T 1svi_A           25 EIALAGRSNVGKSSFI-NSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHH-HHHHT
T ss_pred             EEEEECCCCCCHHHHH-HHHhC
Confidence            5889999999999999 66665

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.78  E-value=0.0048  Score=50.08  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        25 ~i~v~G~~~~GKSsli-~~l~~   45 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLL-NALFN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHH-HHHHT
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            6889999999999999 66655

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.78  E-value=0.0044  Score=50.18  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         3 ki~v~G~~~~GKSsli-~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLI-YRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHH-HHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHhC
Confidence            3689999999999999 66665

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.78  E-value=0.012  Score=55.67  Aligned_cols=39  Identities=18%  Similarity=0.173  Sum_probs=25.8

Q ss_pred             cCCCEEEEeCcc-cHHHHHHHHHHHHhhcCCEEEEEEechh
Q 023563          154 DQVDVIGIDEAQ-FFEDLYDFCREAADHDGKTVIVAGLDGD  193 (280)
Q Consensus       154 ~~p~lLlLDEP~-~~~~i~~~l~~l~~~~g~tviivtHdl~  193 (280)
                      .+.+++++||.. .....++.|.++... +..+++++-+-+
T Consensus       127 ~~~~~iiiDE~~~~~~~~~~~l~~~~~~-~~~~~~vGD~~Q  166 (459)
T 3upu_A          127 AKCRVLICDEVSMYDRKLFKILLSTIPP-WCTIIGIGDNKQ  166 (459)
T ss_dssp             SSCSEEEESCGGGCCHHHHHHHHHHSCT-TCEEEEEECTTS
T ss_pred             cCCCEEEEECchhCCHHHHHHHHHhccC-CCEEEEECCHHH
Confidence            468999999993 223455555555543 778888884443

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.77  E-value=0.006  Score=52.16  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=25.0

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEE
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVA  110 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~  110 (280)
                      -+|.++.|.|+.||||||++ +.+.. +...|..+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~-~~l~~~l~~~~~~v~   38 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNR-DYLAERLRERGIEVQ   38 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHH-HHHHHHHHTTTCCEE
T ss_pred             CCceEEEEEcCCCCCHHHHH-HHHHHHHHHcCCCcc
Confidence            46899999999999999999 66654 333444443

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.76  E-value=0.0049  Score=57.91  Aligned_cols=27  Identities=37%  Similarity=0.346  Sum_probs=22.3

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .-.+..++.|+|++||||||+. +.+..
T Consensus       254 ~~~~~~lIil~G~pGSGKSTla-~~L~~  280 (416)
T 3zvl_A          254 LSPNPEVVVAVGFPGAGKSTFI-QEHLV  280 (416)
T ss_dssp             CCSSCCEEEEESCTTSSHHHHH-HHHTG
T ss_pred             CCCCCEEEEEECCCCCCHHHHH-HHHHH
Confidence            3456789999999999999999 76654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.74  E-value=0.0043  Score=53.73  Aligned_cols=26  Identities=31%  Similarity=0.249  Sum_probs=18.9

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ..+|.++.|.||.||||||++ +.|..
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~-~~l~~   47 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHL-QWFCD   47 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHH-HHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            357899999999999999999 66654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.72  E-value=0.0058  Score=50.08  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+.+++.+
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999444444

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.70  E-value=0.0051  Score=48.54  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         8 ~i~v~G~~~~GKssli-~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLV-LRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4789999999999999 55554

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.70  E-value=0.0051  Score=49.96  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         9 ki~v~G~~~~GKSsli-~~l~~   29 (208)
T 3clv_A            9 KTVLLGESSVGKSSIV-LRLTK   29 (208)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            4889999999999999 66655

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.70  E-value=0.0053  Score=56.44  Aligned_cols=22  Identities=36%  Similarity=0.443  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+++|.||+|||||||. +.|+.
T Consensus         8 ~lI~I~GptgSGKTtla-~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELS-IEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHH
T ss_pred             ceEEEECCCcCcHHHHH-HHHHH
Confidence            48999999999999999 55543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.68  E-value=0.0059  Score=48.86  Aligned_cols=21  Identities=24%  Similarity=0.233  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         8 ki~v~G~~~~GKssl~-~~l~~   28 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLT-TCFAQ   28 (178)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHG
T ss_pred             EEEEECcCCCCHHHHH-HHHHh
Confidence            4789999999999999 66655

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.68  E-value=0.0085  Score=50.19  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEec
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIK  113 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~  113 (280)
                      -.++|+|+.|+|||||+ ..+.+......++..+.
T Consensus        31 ~~i~i~G~~g~GKTTl~-~~l~~~~~~~~~~~~i~   64 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLI-ERTIERIGNEVKIGAML   64 (221)
T ss_dssp             EEEEEEECTTSCHHHHH-HHHHHHHTTTSCEEEEE
T ss_pred             eEEEEEcCCCCCHHHHH-HHHHHHhccCCeEEEEe
Confidence            47899999999999999 55554322224455444

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.68  E-value=0.0053  Score=49.55  Aligned_cols=21  Identities=24%  Similarity=0.221  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         6 ki~v~G~~~~GKSsli-~~l~~   26 (189)
T 4dsu_A            6 KLVVVGADGVGKSALT-IQLIQ   26 (189)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            4789999999999999 66654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.67  E-value=0.0052  Score=50.24  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        27 ki~v~G~~~~GKSsLi-~~l~~   47 (193)
T 2oil_A           27 KVVLIGESGVGKTNLL-SRFTR   47 (193)
T ss_dssp             EEEEESSTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHhc
Confidence            4789999999999999 66655

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.66  E-value=0.0066  Score=55.80  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++.++.|+||.|||||||. ..|+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa-~~LA~   62 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLS-IDLAA   62 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHH-HHHHT
T ss_pred             CCceEEEECCCCCCHHHHH-HHHHH
Confidence            5568999999999999999 55554

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.66  E-value=0.0053  Score=49.63  Aligned_cols=21  Identities=24%  Similarity=0.263  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        13 ki~v~G~~~~GKSsli-~~l~~   33 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVL-YQYTD   33 (195)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            5789999999999999 66654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.66  E-value=0.0053  Score=49.85  Aligned_cols=22  Identities=41%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.|+|||||+ +.+.|.
T Consensus        16 ki~vvG~~~~GKssL~-~~l~~~   37 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNL-KWIYSK   37 (198)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHT
T ss_pred             EEEEECCCCCCHHHHH-HHHHhh
Confidence            4689999999999999 888774

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.65  E-value=0.0055  Score=48.63  Aligned_cols=22  Identities=45%  Similarity=0.398  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      -.++|+|+.|+|||||+ +.+.+
T Consensus         8 ~~i~v~G~~~~GKssl~-~~l~~   29 (171)
T 1upt_A            8 MRILILGLDGAGKTTIL-YRLQV   29 (171)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHH
T ss_pred             cEEEEECCCCCCHHHHH-HHHhc
Confidence            35899999999999999 65544

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.63  E-value=0.0058  Score=52.59  Aligned_cols=27  Identities=15%  Similarity=0.229  Sum_probs=22.0

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++++..++.|+||.||||+|.. +.|+.
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa-~~L~~   51 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQC-EKLVQ   51 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHH-HHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence            3456678999999999999999 66653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.60  E-value=0.0056  Score=48.86  Aligned_cols=21  Identities=29%  Similarity=0.354  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        16 ~i~v~G~~~~GKssli-~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLI-TRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4789999999999999 66654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.59  E-value=0.006  Score=48.14  Aligned_cols=20  Identities=40%  Similarity=0.486  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|+.|+|||||+ +.+.+
T Consensus         3 i~~~G~~~~GKssl~-~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTIL-YKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHc
Confidence            689999999999999 65544

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.58  E-value=0.0076  Score=51.77  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +|.+++|-|+.||||||++ +.|..
T Consensus         1 ~~~~i~~~G~~g~GKtt~~-~~l~~   24 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFV-KLLTK   24 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHH-HHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHH-HHHHH
Confidence            3678999999999999999 76654

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.57  E-value=0.007  Score=52.73  Aligned_cols=31  Identities=29%  Similarity=0.343  Sum_probs=24.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc-chhCCee
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRN  108 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~  108 (280)
                      +|.++.|.|++||||||++ +.|.. +...|..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~-~~l~~~l~~~~~~   57 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAI-QVVVETLQQNGID   57 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHH-HHHHHHHHHTTCC
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHHHHHhcCCC
Confidence            6889999999999999999 66654 3334444

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.56  E-value=0.0061  Score=49.00  Aligned_cols=21  Identities=19%  Similarity=0.156  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        20 ki~v~G~~~~GKSsli-~~l~~   40 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALT-LQFMY   40 (187)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhh
Confidence            4789999999999999 66654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.55  E-value=0.0062  Score=48.59  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        17 ~i~v~G~~~~GKSsli-~~l~~   37 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLL-HQFTE   37 (179)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4789999999999999 66654

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.54  E-value=0.029  Score=50.24  Aligned_cols=26  Identities=31%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ..+.-+.|.||+|+|||+++ +.+...
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lA-r~i~~~   48 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVA-RALHAC   48 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHH-HHHHHH
T ss_pred             CCCCcEEEECCCCchHHHHH-HHHHHh
Confidence            34556889999999999999 888763

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.54  E-value=0.0057  Score=50.68  Aligned_cols=21  Identities=24%  Similarity=0.222  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        25 ki~vvG~~~vGKSsLi-~~l~~   45 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLA-GTFGG   45 (195)
T ss_dssp             EEEEECSTTSSHHHHH-HHTCC
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            5789999999999999 77765

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.52  E-value=0.0064  Score=48.72  Aligned_cols=21  Identities=33%  Similarity=0.358  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        12 ~i~v~G~~~~GKssli-~~l~~   32 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLL-VRFKD   32 (180)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHHh
Confidence            5789999999999999 66654

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.51  E-value=0.0062  Score=51.22  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +-+++|.|++||||||+. +.+..
T Consensus         3 ~~~i~i~G~~gsGkst~~-~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIA-KRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHH-HHHHH
T ss_pred             ceEEEEECCCCCCHHHHH-HHHHH
Confidence            357899999999999999 77754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.51  E-value=0.0065  Score=49.43  Aligned_cols=21  Identities=24%  Similarity=0.213  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++++|+.|+|||||+ +.+.+
T Consensus        23 ki~vvG~~~~GKSsli-~~l~~   43 (190)
T 3con_A           23 KLVVVGAGGVGKSALT-IQLIQ   43 (190)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHHc
Confidence            4789999999999999 65654

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.50  E-value=0.0079  Score=51.49  Aligned_cols=24  Identities=33%  Similarity=0.232  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +|.++.|-|+.||||||.+ +.+..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~-~~l~~   25 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTAR-NVVVE   25 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHH-HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHH
Confidence            4889999999999999999 66654

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.50  E-value=0.02  Score=51.91  Aligned_cols=21  Identities=10%  Similarity=0.013  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|.||.|+||||++ +.++.
T Consensus        26 a~L~~G~~G~GKt~~a-~~la~   46 (334)
T 1a5t_A           26 ALLIQALPGMGDDALI-YALSR   46 (334)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHH
T ss_pred             eEEEECCCCchHHHHH-HHHHH
Confidence            4889999999999999 66655

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.48  E-value=0.0069  Score=48.58  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        14 ki~v~G~~~~GKSsli-~~l~~   34 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLV-LRFVK   34 (181)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHHc
Confidence            4789999999999999 66654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.48  E-value=0.0072  Score=50.47  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        14 ~i~~~G~~g~GKTsl~-~~l~~   34 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLL-TLLTT   34 (218)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            5789999999999999 66655

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.48  E-value=0.0065  Score=49.05  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        12 ki~v~G~~~~GKSsli-~~l~~   32 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLL-HQFIE   32 (186)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            5789999999999999 66654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.46  E-value=0.0068  Score=49.79  Aligned_cols=21  Identities=19%  Similarity=0.156  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        16 ki~v~G~~~~GKSsli-~~l~~   36 (206)
T 2bov_A           16 KVIMVGSGGVGKSALT-LQFMY   36 (206)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            4789999999999999 65554

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.45  E-value=0.0068  Score=49.29  Aligned_cols=21  Identities=33%  Similarity=0.360  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         9 ki~v~G~~~vGKSsli-~~l~~   29 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALL-HVFAK   29 (184)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            4789999999999999 66654

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.44  E-value=0.0094  Score=51.50  Aligned_cols=25  Identities=24%  Similarity=0.201  Sum_probs=21.7

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+|.++.|.|+.||||||++ +.+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~-~~l~~   43 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQS-HLLAE   43 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            46889999999999999999 66654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.44  E-value=0.0071  Score=49.80  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        10 ki~v~G~~~~GKSsli-~~l~~   30 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLM-NQYVN   30 (207)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHHc
Confidence            5789999999999999 66655

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=95.42  E-value=0.056  Score=52.97  Aligned_cols=32  Identities=9%  Similarity=0.017  Sum_probs=24.3

Q ss_pred             eeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           71 ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        71 isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +.+.+..+-.+.|.|..|||||+++..++..+
T Consensus       207 v~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sL  238 (574)
T 2iut_A          207 IITDLAKMPHLLVAGTTGSGKSVGVNAMLLSI  238 (574)
T ss_dssp             EEEEGGGSCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEhhhCCeeEEECCCCCCHHHHHHHHHHHH
Confidence            44566677789999999999999993334444

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.42  E-value=0.008  Score=54.89  Aligned_cols=22  Identities=27%  Similarity=0.372  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++.|+||+|||||||. +.|+.
T Consensus         6 ~~i~i~GptGsGKTtla-~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLA-MALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHH-HHHHH
T ss_pred             cEEEEECCCCCCHHHHH-HHHHH
Confidence            47899999999999999 66654

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.41  E-value=0.006  Score=53.22  Aligned_cols=25  Identities=24%  Similarity=0.230  Sum_probs=21.3

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++.+++|.|+.||||||++ +.|..
T Consensus        22 ~~~~~I~ieG~~GsGKST~~-~~L~~   46 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFV-NILKQ   46 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHH-TTTGG
T ss_pred             cCceEEEEECCCCCCHHHHH-HHHHH
Confidence            56789999999999999999 77665

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.40  E-value=0.0083  Score=51.94  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.|+|||||+ +.+.|.
T Consensus        24 ~I~lvG~~g~GKStl~-n~l~~~   45 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAG-NSILRK   45 (260)
T ss_dssp             EEEEEECTTSCHHHHH-HHHHTS
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            6899999999999999 767663

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.40  E-value=0.0088  Score=51.38  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=21.8

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+|.++.|-|+.||||||++ +.+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~-~~l~~   27 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQC-NILYK   27 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            46899999999999999999 66655

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.39  E-value=0.0097  Score=54.23  Aligned_cols=22  Identities=36%  Similarity=0.483  Sum_probs=18.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHh
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      +.+++|+||+|||||||. ..++
T Consensus         3 ~~~i~i~GptgsGKt~la-~~La   24 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTS-VMLA   24 (322)
T ss_dssp             CEEEEEECCTTSCHHHHH-HHHH
T ss_pred             CcEEEEECCCcCCHHHHH-HHHH
Confidence            458899999999999999 5444

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.37  E-value=0.0078  Score=48.41  Aligned_cols=21  Identities=33%  Similarity=0.295  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         7 ~i~~~G~~~~GKssl~-~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLL-ISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            5789999999999999 65554

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.37  E-value=0.0076  Score=49.22  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        10 ki~vvG~~~~GKSsli-~~l~~   30 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLV-LRFVK   30 (199)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCcHHHHH-HHHHc
Confidence            5889999999999999 66654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.37  E-value=0.013  Score=53.78  Aligned_cols=39  Identities=23%  Similarity=0.190  Sum_probs=27.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN  115 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~  115 (280)
                      ..-+++|+|+.|+|||||+.++...+...|.++..+..+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            446899999999999999933333344567777666544

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.36  E-value=0.0078  Score=49.08  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        24 ki~vvG~~~~GKSsli-~~l~~   44 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFL-FRYAD   44 (189)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4789999999999999 66655

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.35  E-value=0.0079  Score=57.66  Aligned_cols=33  Identities=15%  Similarity=0.088  Sum_probs=27.3

Q ss_pred             eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++.+ +.+-+|+..+|+||+|+|||||+ +.+.+
T Consensus       141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~-~~l~~  173 (473)
T 1sky_E          141 VVDLL-APYIKGGKIGLFGGAGVGKTVLI-QELIH  173 (473)
T ss_dssp             HHHHH-SCEETTCEEEEECCSSSCHHHHH-HHHHH
T ss_pred             HHHHH-hhhccCCEEEEECCCCCCccHHH-HHHHh
Confidence            45544 77889999999999999999999 65554

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.34  E-value=0.0078  Score=49.35  Aligned_cols=21  Identities=19%  Similarity=0.264  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        25 ki~vvG~~~~GKSsli-~~l~~   45 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIV-CRFVQ   45 (192)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHhc
Confidence            4789999999999999 66654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.34  E-value=0.0081  Score=48.45  Aligned_cols=21  Identities=24%  Similarity=0.158  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        20 ki~v~G~~~~GKSsl~-~~l~~   40 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALT-IQFFQ   40 (183)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            4689999999999999 55554

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.33  E-value=0.0081  Score=48.93  Aligned_cols=21  Identities=24%  Similarity=0.313  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        18 ki~v~G~~~~GKSsli-~~l~~   38 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLL-LRFAD   38 (196)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHHc
Confidence            4889999999999999 66655

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.31  E-value=0.0076  Score=49.17  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        23 ki~v~G~~~~GKSsli-~~l~~~   44 (190)
T 2h57_A           23 HVLCLGLDNSGKTTII-NKLKPS   44 (190)
T ss_dssp             EEEEEECTTSSHHHHH-HHTSCG
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            5789999999999999 777664

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.29  E-value=0.0088  Score=49.12  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        28 ki~vvG~~~~GKSsLi-~~l~~   48 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLM-ERFTD   48 (192)
T ss_dssp             EEEEECSTTSSHHHHH-HHHCC
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            4789999999999999 77765

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.28  E-value=0.0077  Score=55.91  Aligned_cols=21  Identities=29%  Similarity=0.278  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhcc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ++|+|++|+|||||+ +.+.+.
T Consensus         4 v~IVG~pnvGKSTL~-n~L~~~   24 (368)
T 2dby_A            4 VGIVGLPNVGKSTLF-NALTRA   24 (368)
T ss_dssp             EEEECCSSSSHHHHH-HHHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHhCC
Confidence            789999999999999 877764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.28  E-value=0.0094  Score=49.07  Aligned_cols=21  Identities=33%  Similarity=0.352  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        10 ki~v~G~~~~GKSsli-~~l~~   30 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFL-FRYAD   30 (203)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHT
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            4789999999999999 66655

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.27  E-value=0.0096  Score=53.51  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|.+|+|||||+ +.+.|-
T Consensus         9 ~V~ivG~~nvGKSTLl-n~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLL-NNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHTS
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            6899999999999999 777764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.26  E-value=0.0085  Score=48.22  Aligned_cols=20  Identities=20%  Similarity=0.160  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~  100 (280)
                      .++|+|+.|+|||||+ +.+.
T Consensus         8 ki~~~G~~~~GKSsli-~~l~   27 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLT-IQFV   27 (181)
T ss_dssp             EEEEEESTTSSHHHHH-HHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHH
Confidence            5789999999999999 5554

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.25  E-value=0.0094  Score=49.35  Aligned_cols=21  Identities=19%  Similarity=0.354  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        27 ki~v~G~~~~GKSsLi-~~l~~   47 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLL-HQFIE   47 (200)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHC
T ss_pred             EEEEECcCCCCHHHHH-HHHHh
Confidence            4789999999999999 66655

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.23  E-value=0.01  Score=52.04  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.|||||||+ +.+.|-
T Consensus         3 kI~lvG~~n~GKSTL~-n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLF-NALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHTT
T ss_pred             EEEEECCCCCCHHHHH-HHHHCC
Confidence            5789999999999999 888774

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=95.22  E-value=0.018  Score=54.80  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=21.4

Q ss_pred             eeEeeCceEEEEEcCCCCcHHHHHHH
Q 023563           72 SVSSPSGEIHVIVGPMFAGKTTTLLR   97 (280)
Q Consensus        72 sl~i~~Gei~~liGpNGsGKSTLl~~   97 (280)
                      -.......+..|.|+-||||||++.+
T Consensus       155 ~~~~~~~~v~~I~G~aGsGKTt~I~~  180 (446)
T 3vkw_A          155 EPHVSSAKVVLVDGVPGCGKTKEILS  180 (446)
T ss_dssp             BCCCCCSEEEEEEECTTSCHHHHHHH
T ss_pred             ccccccccEEEEEcCCCCCHHHHHHH
Confidence            44456778999999999999999933

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.22  E-value=0.0094  Score=48.57  Aligned_cols=21  Identities=29%  Similarity=0.313  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        22 ki~v~G~~~~GKSsli-~~l~~   42 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLT-YRFCA   42 (189)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4789999999999999 65554

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.21  E-value=0.0092  Score=48.79  Aligned_cols=21  Identities=24%  Similarity=0.313  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        23 ki~v~G~~~~GKSsli-~~l~~   43 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLL-LQFTD   43 (191)
T ss_dssp             EEEEESSTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHhc
Confidence            4789999999999999 66654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.21  E-value=0.0099  Score=48.33  Aligned_cols=22  Identities=41%  Similarity=0.392  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      =.++|+|+.|+|||||+ +.+.+
T Consensus        17 ~~i~v~G~~~~GKssl~-~~l~~   38 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTIL-YQFSM   38 (187)
T ss_dssp             EEEEEEESTTSSHHHHH-HHHHT
T ss_pred             cEEEEECCCCCCHHHHH-HHHhc
Confidence            36799999999999999 66654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.21  E-value=0.0088  Score=49.39  Aligned_cols=21  Identities=29%  Similarity=0.305  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        26 ki~vvG~~~~GKSsli-~~l~~   46 (201)
T 3oes_A           26 KVVILGYRCVGKTSLA-HQFVE   46 (201)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCcCHHHHH-HHHHh
Confidence            6789999999999999 66655

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.20  E-value=0.0091  Score=52.48  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|++|+|||||+ +.|.+-
T Consensus        10 ~I~vvG~~g~GKSTLi-n~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLI-NSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHH-HHHSSS
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            4789999999999999 877653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.20  E-value=0.009  Score=48.84  Aligned_cols=22  Identities=32%  Similarity=0.382  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        25 ki~v~G~~~~GKSsli-~~l~~~   46 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFL-FRYADD   46 (191)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHHH
T ss_pred             EEEEECCCCcCHHHHH-HHHhcC
Confidence            4689999999999999 666653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.20  E-value=0.01  Score=48.44  Aligned_cols=21  Identities=29%  Similarity=0.398  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        19 ki~v~G~~~~GKSsl~-~~l~~   39 (199)
T 4bas_A           19 QVVMCGLDNSGKTTII-NQVKP   39 (199)
T ss_dssp             EEEEECCTTSCHHHHH-HHHSC
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            5789999999999999 76665

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.19  E-value=0.0063  Score=50.93  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        31 ~i~v~G~~~~GKSsli-n~l~~~   52 (223)
T 4dhe_A           31 EIAFAGRSNAGKSTAI-NVLCNQ   52 (223)
T ss_dssp             EEEEEESCHHHHHHHH-HHHTTC
T ss_pred             EEEEEcCCCCCHHHHH-HHHhCC
Confidence            6789999999999999 777663

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.18  E-value=0.0091  Score=49.87  Aligned_cols=21  Identities=33%  Similarity=0.436  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        28 ki~lvG~~~vGKSsLi-~~l~~   48 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLV-RRFTQ   48 (201)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHHh
Confidence            4789999999999999 65544

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.16  E-value=0.0093  Score=49.30  Aligned_cols=21  Identities=24%  Similarity=0.316  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        10 ki~v~G~~~~GKSsli-~~l~~   30 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLL-LRFSD   30 (206)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            5789999999999999 66655

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=95.14  E-value=0.011  Score=53.62  Aligned_cols=39  Identities=15%  Similarity=0.035  Sum_probs=29.5

Q ss_pred             EEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHH
Q 023563           60 FSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        60 ~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l   99 (280)
                      ..|.....+++.-+.+ .|.-+.|.|++|+||||+.+.++
T Consensus       130 ~~la~~~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~  168 (312)
T 1knx_A          130 EQFATVAQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI  168 (312)
T ss_dssp             HHTCCCEEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             HHhhhcceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            3445556788876666 47789999999999999994443

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.13  E-value=0.011  Score=53.09  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      -+++|+|+.|+|||||+ +.+.|-
T Consensus        11 g~v~ivG~~nvGKSTLi-n~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLL-NNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHTS
T ss_pred             CEEEEECCCCCcHHHHH-HHHhCC
Confidence            38899999999999999 777764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.13  E-value=0.015  Score=48.85  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      -.++|+|+.|+|||||+.+++.+
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            47889999999999999444433

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.11  E-value=0.01  Score=48.65  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        30 ki~v~G~~~vGKSsli-~~l~~   50 (196)
T 2atv_A           30 KLAIFGRAGVGKSALV-VRFLT   50 (196)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            5789999999999999 65554

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.11  E-value=0.0094  Score=48.30  Aligned_cols=21  Identities=43%  Similarity=0.404  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        23 ~i~v~G~~~~GKSsli-~~l~~   43 (181)
T 2h17_A           23 KVIIVGLDNAGKTTIL-YQFSM   43 (181)
T ss_dssp             EEEEEEETTSSHHHHH-HHHHT
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            4689999999999999 66655

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.10  E-value=0.01  Score=48.10  Aligned_cols=21  Identities=29%  Similarity=0.365  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        17 ~i~v~G~~~~GKssli-~~l~~   37 (195)
T 1x3s_A           17 KILIIGESGVGKSSLL-LRFTD   37 (195)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            5789999999999999 66654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.09  E-value=0.011  Score=50.01  Aligned_cols=21  Identities=14%  Similarity=0.281  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        31 kI~vvG~~~vGKSsLi-n~l~~   51 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFM-NIVSR   51 (228)
T ss_dssp             EEEEECSTTSSHHHHH-HHHTT
T ss_pred             EEEEECCCCCCHHHHH-HHHhC
Confidence            6789999999999999 76765

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.09  E-value=0.012  Score=50.02  Aligned_cols=21  Identities=43%  Similarity=0.586  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++.|+||.||||+|.. +.|+.
T Consensus         2 ~Iil~GpPGsGKgTqa-~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQA-KRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            5789999999999999 66654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.09  E-value=0.011  Score=48.84  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        30 ki~v~G~~~~GKSsli-~~l~~   50 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFL-MRLCK   50 (199)
T ss_dssp             EEEEESSTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHHh
Confidence            5789999999999999 66654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.08  E-value=0.011  Score=48.46  Aligned_cols=21  Identities=33%  Similarity=0.292  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        25 ki~~vG~~~~GKSsl~-~~l~~   45 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLL-LAFSK   45 (194)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHhc
Confidence            5789999999999999 66654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.08  E-value=0.011  Score=48.35  Aligned_cols=21  Identities=33%  Similarity=0.456  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        24 ki~v~G~~~~GKSsli-~~l~~   44 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFV-NVIAS   44 (188)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4789999999999999 66654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.05  E-value=0.11  Score=49.40  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ...++.++|.+||||||+. +.+..
T Consensus        38 ~~~~IvlvGlpGsGKSTia-~~La~   61 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYIS-KKLTR   61 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CcEEEEEECCCCCCHHHHH-HHHHH
Confidence            3457899999999999999 66654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.05  E-value=0.011  Score=48.90  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      =.++|+|+.|+|||||+ +.+.+
T Consensus        21 ~~i~v~G~~~~GKSsli-~~l~~   42 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLL-VRFVE   42 (213)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHh
Confidence            36899999999999999 66654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.05  E-value=0.0084  Score=48.13  Aligned_cols=21  Identities=19%  Similarity=0.319  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         9 ki~~vG~~~vGKTsli-~~l~~   29 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLI-HRFLT   29 (178)
T ss_dssp             EEEEECCGGGCHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            4789999999999999 65554

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=95.04  E-value=0.011  Score=54.71  Aligned_cols=23  Identities=30%  Similarity=0.275  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      |-.++|+|.+|+|||||+ +.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~-n~Lt~   24 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLF-NALTK   24 (363)
T ss_dssp             CCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCEEEEECCCCCCHHHHH-HHHHC
Confidence            346899999999999999 77776

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.04  E-value=0.013  Score=46.90  Aligned_cols=21  Identities=33%  Similarity=0.245  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        10 ki~v~G~~~~GKssl~-~~~~~   30 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLL-ISYTS   30 (182)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            5789999999999999 55554

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.03  E-value=0.012  Score=48.25  Aligned_cols=21  Identities=29%  Similarity=0.294  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        22 ki~~~G~~~~GKssl~-~~l~~   42 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLV-VSYTT   42 (201)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHC
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            5889999999999999 66655

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.03  E-value=0.015  Score=52.95  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=18.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHh
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      ..+++|+||+|||||||. ..++
T Consensus        10 ~~~i~i~GptgsGKt~la-~~La   31 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALA-IELR   31 (316)
T ss_dssp             CEEEEEECCTTSCHHHHH-HHHH
T ss_pred             CcEEEEECCCccCHHHHH-HHHH
Confidence            458899999999999999 5454

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.02  E-value=0.012  Score=48.42  Aligned_cols=21  Identities=14%  Similarity=0.210  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        22 ki~~vG~~~vGKTsLi-~~l~~   42 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQ-KVVFH   42 (196)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            4789999999999999 76666

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.01  E-value=0.082  Score=53.04  Aligned_cols=26  Identities=19%  Similarity=0.160  Sum_probs=21.6

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ..+.-+.|+||.|+||||++ +.++..
T Consensus       205 ~~~~~vlL~G~~GtGKT~la-~~la~~  230 (758)
T 1r6b_X          205 RRKNNPLLVGESGVGKTAIA-EGLAWR  230 (758)
T ss_dssp             SSSCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             cCCCCeEEEcCCCCCHHHHH-HHHHHH
Confidence            35667899999999999999 777764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.01  E-value=0.013  Score=48.88  Aligned_cols=22  Identities=32%  Similarity=0.268  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        27 ki~vvG~~~~GKSsLi-~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFL-YRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHH-HHHHCS
T ss_pred             EEEEECcCCCCHHHHH-HHHhcC
Confidence            4789999999999999 766653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.01  E-value=0.013  Score=51.26  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.|+|||||+ +.+.|-
T Consensus         7 kI~lvG~~nvGKTsL~-n~l~g~   28 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLF-NALTGT   28 (258)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHTT
T ss_pred             EEEEECCCCCCHHHHH-HHHHCC
Confidence            5899999999999999 777763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	280
d2b8ta1	139	c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-term	6e-39
d1xx6a1	141	c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-termi	2e-37
d1xbta1	133	c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-term	1e-36
d1xbta2	41	g.39.1.14 (A:151-191) Thymidine kinase, TK1, C-ter	3e-12
d1xx6a2	49	g.39.1.14 (A:143-191) Thymidine kinase, TK1, C-ter	5e-11
d2b8ta2	67	g.39.1.14 (A:150-216) Thymidine kinase, TK1, C-ter	2e-10
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.004

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Length = 139

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

 Score =  131 bits (330), Expect = 6e-39
 Identities = 48/139 (34%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 78  GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCA 137
           G I  I GPMFAGKT  L+RR+           V K   DTR    +I +  G  LP   
Sbjct: 2   GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSI-RNIQSRTGTSLPSVE 60

Query: 138 LTTLSSFRQKFGSDAY-DQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLR 196
           + +         S+++ D+  VIGIDE QFF+D           +G  VI++GLD ++  
Sbjct: 61  VESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 120

Query: 197 RSFGSVIDIIPLADSVTKL 215
             FG +  +   AD +TKL
Sbjct: 121 EPFGPIAKLFTYADKITKL 139

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Length = 141

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

 Score =  127 bits (320), Expect = 2e-37
 Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 4/139 (2%)

Query: 77  SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC 136
            G + VIVGPM++GK+  L+RRI+      + + V K   D RY  + +V+H G K    
Sbjct: 6   HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAV 65

Query: 137 ALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLR 196
           A+       + F     +  +VI IDE QFF+D            G+ VI AGLD D+  
Sbjct: 66  AIKNSREILKYF----EEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDFRG 121

Query: 197 RSFGSVIDIIPLADSVTKL 215
           + FG + +++ +A+ V K+
Sbjct: 122 KPFGPIPELMAIAEFVDKI 140

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 1e-36
 Identities = 62/139 (44%), Positives = 83/139 (59%), Gaps = 7/139 (5%)

Query: 78  GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCA 137
           G+I VI+GPMF+GK+T L+RR++          VIK  KDTRY   S  THD   +    
Sbjct: 2   GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALP 60

Query: 138 LTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRR 197
              L    Q+        V VIGIDE QFF D+ +FC   A+   KTVIVA LDG + R+
Sbjct: 61  ACLLRDVAQEA-----LGVAVIGIDEGQFFPDIVEFCEAMANAG-KTVIVAALDGTFQRK 114

Query: 198 SFGSVIDIIPLADSVTKLT 216
            FG++++++PLA+SV KLT
Sbjct: 115 PFGAILNLVPLAESVVKLT 133

>d1xbta2 g.39.1.14 (A:151-191) Thymidine kinase, TK1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Type II thymidine kinase zinc finger
domain: Thymidine kinase, TK1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (140), Expect = 3e-12
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 217 ARCEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCRQHY 255
           A C  C + A +T R   E + E+IGG+D Y  VCR  Y
Sbjct: 1   AVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCY 39

>d1xx6a2 g.39.1.14 (A:143-191) Thymidine kinase, TK1, C-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Length = 49

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Type II thymidine kinase zinc finger
domain: Thymidine kinase, TK1, C-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 54.8 bits (132), Expect = 5e-11
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 6/46 (13%)

Query: 217 ARCEFCGKRAFFTLRKTE------ETKTELIGGSDIYMPVCRQHYV 256
           A C  CG  A  T R         +    LIG  + Y   CR+ +V
Sbjct: 1   AICVVCGNPATRTQRLINGKPAFYDDPVVLIGAMESYEARCRKCHV 46

>d2b8ta2 g.39.1.14 (A:150-216) Thymidine kinase, TK1, C-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Length = 67

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Type II thymidine kinase zinc finger
domain: Thymidine kinase, TK1, C-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

 Score = 53.4 bits (128), Expect = 2e-10
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 216 TARCEFCGKRAFFTLRKTE------ETKTELIGGSDIYMPVCRQHYV 256
           TA C  CG  A  +LRK +            IG  + Y  VCR H+ 
Sbjct: 1   TAICNECGAEATHSLRKIDGKHADYNDDIVKIGCQEFYSAVCRHHHK 47

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 83  IVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKL 133
           +VG   +GKTT + + + A  ++G  V  +K +             D V+ 
Sbjct: 6   VVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGV-DSVRH 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	280
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.97
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.97
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.97
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.95
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.95
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	99.62
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	99.6
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	99.55
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.55
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.42
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.1
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.71
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.66
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.65
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	98.36
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.28
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	98.17
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.02
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.91
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.89
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.89
d1okkd2	207	GTPase domain of the signal recognition particle r	97.88
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.82
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.8
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.77
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.67
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.66
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.62
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.59
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.56
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.55
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.54
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.53
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.49
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.48
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.45
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.44
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.41
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.35
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.35
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.32
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.3
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.3
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.29
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.29
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.27
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.24
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.23
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.22
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.22
d1xbta2	41	Thymidine kinase, TK1, C-terminal domain {Human (H	97.21
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.16
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.14
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.14
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.12
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.11
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.09
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.08
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.07
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.06
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.02
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.0
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.89
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.88
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.84
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.82
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.8
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.79
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.78
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.76
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.76
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.76
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.75
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.74
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.74
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.74
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.71
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.71
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.7
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.69
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.68
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.66
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.65
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.65
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.64
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.6
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.58
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.55
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.5
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.48
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.47
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.47
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.46
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.44
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.42
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.42
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.41
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.41
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.4
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.4
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.38
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.37
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.35
d1xx6a2	49	Thymidine kinase, TK1, C-terminal domain {Clostrid	96.35
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.3
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.27
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.26
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.26
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.26
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.25
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.24
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.24
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.22
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.22
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.2
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.18
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.17
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.16
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.15
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.1
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.09
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.09
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.08
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.07
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.02
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.01
d2b8ta2	67	Thymidine kinase, TK1, C-terminal domain {Ureaplas	96.0
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.99
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.97
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	95.89
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.89
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.88
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.84
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.83
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.75
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.74
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.73
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.73
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.73
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.72
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.72
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.67
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.64
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.64
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.63
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.63
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.58
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.57
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	95.54
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.46
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.42
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.41
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.4
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.38
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.37
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.36
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.36
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.32
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.3
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.29
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.28
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.26
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.25
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.17
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.17
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.16
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.15
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.13
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.12
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.12
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.11
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.1
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.07
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.05
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.04
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.02
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.99
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.99
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.93
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.92
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.88
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.87
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.86
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.83
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.82
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	94.8
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.8
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.78
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.77
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.66
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.63
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.63
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.61
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.58
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.5
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.48
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.46
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.46
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.44
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.4
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.27
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.23
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.18
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.11
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.06
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.04
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.88
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.78
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	93.69
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.61
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.61
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.34
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.33
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.33
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.06
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.04
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	92.89
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.5
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	92.02
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	92.0
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.67
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	91.47
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	91.36
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	91.31
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	91.27
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.18
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	91.08
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.01
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.0
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.95
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.88
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.51
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	90.51
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	90.29
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	90.12
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.85
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	89.85
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.81
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	89.17
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.57
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	88.13
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	87.72
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	86.99
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	86.93
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	86.9
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	86.55
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	86.45
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	86.08
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	85.95
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	84.99
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	84.38
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	82.36
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	81.64
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	81.29
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	80.8
d1tuea_	205	Replication protein E1 helicase domain {Human papi	80.5

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.9e-39  Score=284.21  Aligned_cols=167  Identities=18%  Similarity=0.157  Sum_probs=128.1

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~~  123 (280)
                      .|+++||+|+||++.||+||||+|++||+++|+||||||||||+ ++|.|+..        +|+++...+   ..+..++
T Consensus         6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl-~~i~Gl~~p~sG~I~i~g~~i~~~~---~~~r~ig   81 (239)
T d1v43a3           6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTL-RMIAGLEEPTEGRIYFGDRDVTYLP---PKDRNIS   81 (239)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSC---GGGGTEE
T ss_pred             eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCCEEEEcceecccCC---cccceEE
Confidence            48999999999999999999999999999999999999999999 99999832        333322111   1233455


Q ss_pred             eeeeecccccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563          124 SIVTHDGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGID  162 (280)
Q Consensus       124 ~v~~~~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD  162 (280)
                      +++|.......                           .+...++.++++++              |+||+.+|++||||
T Consensus        82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllD  161 (239)
T d1v43a3          82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD  161 (239)
T ss_dssp             EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeec
Confidence            55553321111                           11222333333222              67999999999999


Q ss_pred             CcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563          163 EAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK  232 (280)
Q Consensus       163 EP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~  232 (280)
                      |||+.      .+++++|++++++.|+|||++|||++++.+          +||||++|++ ++++.|+|++++.++
T Consensus       162 EPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~----------~~dri~vm~~G~iv~~G~~~el~~~P  228 (239)
T d1v43a3         162 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT----------MGDRIAVMNRGQLLQIGSPTEVYLRP  228 (239)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            99764      468999999988779999999999999987          9999999999 999999999998543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.5e-39  Score=282.63  Aligned_cols=168  Identities=18%  Similarity=0.152  Sum_probs=123.6

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceeee
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIVT  127 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~~  127 (280)
                      |+++||+|+|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....|.+..++    ...+..+++++|
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl-~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q   79 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLL-RMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ   79 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHH-HHHhcCCCCCCCEEEECCEECCCCchhhceeeeecc
Confidence            6899999999999999999999999999999999999999999 99999832 22222221111    111223444444


Q ss_pred             eccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563          128 HDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF  166 (280)
Q Consensus       128 ~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~  166 (280)
                      ...+..                           ..+...++.++.+++              |+||+.+|++|||||||+
T Consensus        80 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts  159 (232)
T d2awna2          80 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS  159 (232)
T ss_dssp             SCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTT
T ss_pred             ccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence            322111                           112223333333333              679999999999999976


Q ss_pred             HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563          167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~  231 (280)
                      .+      +++++|+++.++.|+|||++|||++++.+          +||||++|++ ++++.|+|++++.+
T Consensus       160 ~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~----------~~dri~vm~~G~iv~~G~~~el~~~  221 (232)
T d2awna2         160 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMT----------LADKIVVLDAGRVAQVGKPLELYHY  221 (232)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEeCHHHHHhC
Confidence            54      58999999988789999999999999987          9999999999 99999999999843

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=2.4e-38  Score=278.56  Aligned_cols=169  Identities=17%  Similarity=0.095  Sum_probs=131.0

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCcc---ccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKD---TRY  120 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~---~~~  120 (280)
                      .|+++||+|+||++.||+||||+|++||++||+||||||||||+ ++|+|+.        ++|+++........   .+.
T Consensus         3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll-~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r   81 (240)
T d1g2912           3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTL-RMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR   81 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred             cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHH-HHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence            58999999999999999999999999999999999999999999 9999983        34555543322211   133


Q ss_pred             ccceeeeeccccccc---------------------------ccccCchHHHHHH--------------hhhhccCCCEE
Q 023563          121 GLDSIVTHDGVKLPC---------------------------CALTTLSSFRQKF--------------GSDAYDQVDVI  159 (280)
Q Consensus       121 ~~~~v~~~~~~~~~~---------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lL  159 (280)
                      .+++++|...+....                           +...++.++.+++              |+||+.+|++|
T Consensus        82 ~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iL  161 (240)
T d1g2912          82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVF  161 (240)
T ss_dssp             SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             cceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            456666643321111                           1112222222221              67999999999


Q ss_pred             EEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563          160 GIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       160 lLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~  231 (280)
                      ||||||+.      .+++++|++++++.|+|||++|||++++.+          +||||++|++ ++++.|++++++.+
T Consensus       162 llDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~----------~~drv~vm~~G~iv~~G~~~el~~~  230 (240)
T d1g2912         162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMT----------MGDRIAVMNRGVLQQVGSPDEVYDK  230 (240)
T ss_dssp             EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             EecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999765      458999999988779999999999999987          9999999999 99999999999843

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1.2e-38  Score=278.53  Aligned_cols=168  Identities=16%  Similarity=0.102  Sum_probs=126.1

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Ccccccccceee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLDSIV  126 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~~v~  126 (280)
                      ||+++||+|+|++ .+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....|.+...    ....+..+++++
T Consensus         1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll-~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~   78 (229)
T d3d31a2           1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFL-ELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY   78 (229)
T ss_dssp             CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHH-HHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred             CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHH-HHHhcCcCCCCCEEEEccEeccccchhHhcceeec
Confidence            6899999999987 489999999999999999999999999999 99999832 2222222111    111133455555


Q ss_pred             eeccccccc------------------------ccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH-
Q 023563          127 THDGVKLPC------------------------CALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF-  167 (280)
Q Consensus       127 ~~~~~~~~~------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~-  167 (280)
                      |...+....                        +...++.+++++.              ||||+.+|++|||||||+. 
T Consensus        79 Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~L  158 (229)
T d3d31a2          79 QNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL  158 (229)
T ss_dssp             TTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred             cccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCC
Confidence            543221111                        1111222222211              6899999999999999765 


Q ss_pred             -----HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563          168 -----EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR  231 (280)
Q Consensus       168 -----~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~  231 (280)
                           .+++++|++++++.|+|||++|||++++.+          +||||++|++ +++++|+|++++.+
T Consensus       159 D~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~----------~~drv~vm~~G~iv~~g~~~el~~~  218 (229)
T d3d31a2         159 DPRTQENAREMLSVLHKKNKLTVLHITHDQTEARI----------MADRIAVVMDGKLIQVGKPEEIFEK  218 (229)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHH----------HCSEEEEESSSCEEEEECHHHHHSS
T ss_pred             CHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhC
Confidence                 458999999988779999999999999987          9999999999 99999999999844

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=1.3e-38  Score=280.94  Aligned_cols=168  Identities=16%  Similarity=0.220  Sum_probs=123.5

Q ss_pred             CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCccccc
Q 023563           49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRY  120 (280)
Q Consensus        49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~  120 (280)
                      .+++|+++||+|+||+..||+||||+|++||++||+||||||||||+ ++|.|+..        +|+++...+.....+.
T Consensus         3 sd~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~-~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~   81 (240)
T d1ji0a_           3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTL-SAIAGLVRAQKGKIIFNGQDITNKPAHVINRM   81 (240)
T ss_dssp             CSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred             cceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHH-HHHhCCCCCCccEEEecccccccccHHHHHHh
Confidence            35689999999999999999999999999999999999999999999 99999832        3332211000001112


Q ss_pred             ccceeeeeccccccccc---------------------------c-cCchHHHH------------H--HhhhhccCCCE
Q 023563          121 GLDSIVTHDGVKLPCCA---------------------------L-TTLSSFRQ------------K--FGSDAYDQVDV  158 (280)
Q Consensus       121 ~~~~v~~~~~~~~~~~~---------------------------~-~~l~~~~~------------~--~a~aL~~~p~l  158 (280)
                      ++.+++|.... ++.++                           . .++.+..+            +  .|+||+.+|++
T Consensus        82 gi~~~~q~~~l-~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~l  160 (240)
T d1ji0a_          82 GIALVPEGRRI-FPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL  160 (240)
T ss_dssp             TEEEECSSCCC-CTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred             cccccCccccc-CCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence            22222221111 00000                           0 00111111            1  16799999999


Q ss_pred             EEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          159 IGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       159 LlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||||||+.      .+++++|++++++ |+|||++|||++++.+          +||||++|++ ++++.|+++++.
T Consensus       161 LllDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~tH~l~~~~~----------~~drv~vl~~G~iv~~g~~~el~  227 (240)
T d1ji0a_         161 LMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNALGALK----------VAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             EEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHHHHHH----------HCSEEEEEETTEEEEEEEHHHHH
T ss_pred             eeecCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHh
Confidence            999999764      4689999999887 9999999999999987          9999999999 999999999987

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.6e-38  Score=277.45  Aligned_cols=170  Identities=16%  Similarity=0.212  Sum_probs=125.7

Q ss_pred             cEEEcCceEEeCCe----eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCc--c
Q 023563           52 MVSPRPPLFSLQNR----NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNK--D  117 (280)
Q Consensus        52 ~l~~~~ls~~y~~~----~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~--~  117 (280)
                      ||+++||+|+|+..    .||+||||+|++||+++|+||||||||||+ ++|+|+..        +|+++.-.....  .
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl-~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~   79 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-RCVNLLERPTEGSVLVDGQELTTLSESELTK   79 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHH-HHHTTSSCCSEEEEEETTEEECTTCHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHcCCccccCCceEEcCeEeeeCChhhhhh
Confidence            68999999999642    689999999999999999999999999999 99999832        333322111100  0


Q ss_pred             cccccceeeeeccccccc---------------------------ccccCchHHHHHH--------------hhhhccCC
Q 023563          118 TRYGLDSIVTHDGVKLPC---------------------------CALTTLSSFRQKF--------------GSDAYDQV  156 (280)
Q Consensus       118 ~~~~~~~v~~~~~~~~~~---------------------------~~~~~l~~~~~~~--------------a~aL~~~p  156 (280)
                      .|..+++++|..+.....                           +...++.++++++              |+||+.+|
T Consensus        80 ~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P  159 (240)
T d3dhwc1          80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  159 (240)
T ss_dssp             HHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCC
T ss_pred             hhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCC
Confidence            122344555433221111                           1111222221111              67999999


Q ss_pred             CEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++||+||||+.      .+++++|++++++.|+|||++|||++++.+          +||||++|++ ++++.|++++++
T Consensus       160 ~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~----------~~dri~vl~~G~iv~~G~~~ei~  229 (240)
T d3dhwc1         160 KVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR----------ICDCVAVISNGELIEQDTVSEVF  229 (240)
T ss_dssp             SEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHH----------HCSEEEEEETTEEEEEEETTTTT
T ss_pred             CeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEEECCHHHHH
Confidence            99999999764      469999999988789999999999999987          9999999999 999999999998


Q ss_pred             eee
Q 023563          230 LRK  232 (280)
Q Consensus       230 ~~~  232 (280)
                      .++
T Consensus       230 ~~P  232 (240)
T d3dhwc1         230 SHP  232 (240)
T ss_dssp             CSS
T ss_pred             hCC
Confidence            544

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2.3e-37  Score=275.46  Aligned_cols=168  Identities=18%  Similarity=0.204  Sum_probs=127.4

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCc-------
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNK-------  116 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~-------  116 (280)
                      .|+++||+|+||++.||+||||+|++||++||+||||||||||+ ++|.|+.        ++|+++...++..       
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl-~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~   80 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFL-RCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD   80 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHH-HHHHcCccCCCCCEEECCEEeccCCccchhccccc
Confidence            59999999999999999999999999999999999999999999 9999983        3454443332211       


Q ss_pred             -----ccccccceeeeecccccc----------------------------cccccCchH-HHHHH--------------
Q 023563          117 -----DTRYGLDSIVTHDGVKLP----------------------------CCALTTLSS-FRQKF--------------  148 (280)
Q Consensus       117 -----~~~~~~~~v~~~~~~~~~----------------------------~~~~~~l~~-~~~~~--------------  148 (280)
                           ..+..+++++|.......                            .+...++.. ..+++              
T Consensus        81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~i  160 (258)
T d1b0ua_          81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  160 (258)
T ss_dssp             HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred             HhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHH
Confidence                 012234444443221110                            011122222 11111              


Q ss_pred             hhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          149 GSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      |+||+.+|++|||||||+.      .+++++|++++++ |+|||+||||++++.+          +||||++|++ ++++
T Consensus       161 AraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~-g~til~vtHdl~~~~~----------~adri~vm~~G~iv~  229 (258)
T d1b0ua_         161 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARH----------VSSHVIFLHQGKIEE  229 (258)
T ss_dssp             HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHH----------HCSEEEEEETTEEEE
T ss_pred             HHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhccc-CCceEEEeCCHHHHHH----------hCCEEEEEECCEEEE
Confidence            6799999999999999765      4589999999886 9999999999999987          9999999999 9999


Q ss_pred             ccCcceeeee
Q 023563          222 CGKRAFFTLR  231 (280)
Q Consensus       222 ~g~~~~~~~~  231 (280)
                      .|+|++++.+
T Consensus       230 ~g~~~ev~~~  239 (258)
T d1b0ua_         230 EGDPEQVFGN  239 (258)
T ss_dssp             EECHHHHHHS
T ss_pred             EcCHHHHHhC
Confidence            9999999843

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.4e-37  Score=273.73  Aligned_cols=168  Identities=18%  Similarity=0.144  Sum_probs=129.6

Q ss_pred             cEEEcCceEEe--CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCC--cccc
Q 023563           52 MVSPRPPLFSL--QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSN--KDTR  119 (280)
Q Consensus        52 ~l~~~~ls~~y--~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~--~~~~  119 (280)
                      .|+++||+|+|  |+..||+||||+|++||+++|+||||||||||+ ++|+|+.        ++|+++......  ...+
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll-~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r   81 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFM-RIIAGLDVPSTGELYFDDRLVASNGKLIVPPED   81 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHH-HHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHH-HHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence            58999999999  567899999999999999999999999999999 9999983        355555432211  1123


Q ss_pred             cccceeeeeccccccc----------------------------ccccCchHHHHHH--------------hhhhccCCC
Q 023563          120 YGLDSIVTHDGVKLPC----------------------------CALTTLSSFRQKF--------------GSDAYDQVD  157 (280)
Q Consensus       120 ~~~~~v~~~~~~~~~~----------------------------~~~~~l~~~~~~~--------------a~aL~~~p~  157 (280)
                      ..+++++|...+ ++.                            +...++.++.+++              ||||+.+|+
T Consensus        82 r~ig~vfQ~~~L-~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~  160 (242)
T d1oxxk2          82 RKIGMVFQTWAL-YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS  160 (242)
T ss_dssp             SCEEEEETTSCC-CTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             ccceEEeccccc-cccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhccc
Confidence            456666664322 111                            1112222222221              689999999


Q ss_pred             EEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563          158 VIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL  230 (280)
Q Consensus       158 lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~  230 (280)
                      +||+|||++.      .+++++|++++++.|+|+|++|||++++.+          +||||++|++ ++++.|+|++++.
T Consensus       161 llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~----------~~dri~vm~~G~iv~~g~~~el~~  230 (242)
T d1oxxk2         161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFA----------IADRVGVLVKGKLVQVGKPEDLYD  230 (242)
T ss_dssp             EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999654      469999999988789999999999999986          9999999999 9999999999984


Q ss_pred             e
Q 023563          231 R  231 (280)
Q Consensus       231 ~  231 (280)
                      +
T Consensus       231 ~  231 (242)
T d1oxxk2         231 N  231 (242)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.3e-37  Score=274.04  Aligned_cols=172  Identities=19%  Similarity=0.183  Sum_probs=124.2

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----cccccccee
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGLDSI  125 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~~~v  125 (280)
                      .|+++||+|+||++.||+||||+|++||++||+||||||||||+ ++|+|+.. ....+.+...+.     ..+..++++
T Consensus         2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl-~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~v   80 (238)
T d1vpla_           2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTL-RIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL   80 (238)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred             CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCCEEEECcEecccChHHHHhhEeEe
Confidence            48899999999999999999999999999999999999999999 99999843 122222211100     111222333


Q ss_pred             eeecccccc---------------------------cccccCchHHH------------HH--HhhhhccCCCEEEEeCc
Q 023563          126 VTHDGVKLP---------------------------CCALTTLSSFR------------QK--FGSDAYDQVDVIGIDEA  164 (280)
Q Consensus       126 ~~~~~~~~~---------------------------~~~~~~l~~~~------------~~--~a~aL~~~p~lLlLDEP  164 (280)
                      +|.......                           .+...++.+..            ++  .|+||+.+|++||||||
T Consensus        81 pq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEP  160 (238)
T d1vpla_          81 PEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP  160 (238)
T ss_dssp             CTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             eeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence            322111000                           00011111111            11  16789999999999999


Q ss_pred             ccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeecCC
Q 023563          165 QFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKTEE  235 (280)
Q Consensus       165 ~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~~~  235 (280)
                      ++.      .+++++|++++++ |+|||++|||++++..          +||||++|++ ++++.|+|+++..+++..
T Consensus       161 t~gLD~~~~~~i~~~i~~~~~~-g~tii~~tH~l~~~~~----------~~drv~vl~~G~iv~~g~~~el~~~~~~~  227 (238)
T d1vpla_         161 TSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEF----------LCDRIALIHNGTIVETGTVEELKERYKAQ  227 (238)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHHHHTT----------TCSEEEEEETTEEEEEEEHHHHHHHTTCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhccCCc
Confidence            765      4589999999887 9999999999999986          9999999999 999999999997444433

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.8e-37  Score=273.59  Aligned_cols=166  Identities=15%  Similarity=0.167  Sum_probs=122.2

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~~  123 (280)
                      +|+++||+|+||+..||+||||+|++||++||+||||||||||+ ++|.|+..        +|+++...++....+.+++
T Consensus         4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl-~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~   82 (254)
T d1g6ha_           4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLI-NVITGFLKADEGRVYFENKDITNKEPAELYHYGIV   82 (254)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred             eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHH-HHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCC
Confidence            79999999999999999999999999999999999999999999 99999832        3332211111111122333


Q ss_pred             eeeeecccccc----------------------------------------cccccCchHHHHHH--------------h
Q 023563          124 SIVTHDGVKLP----------------------------------------CCALTTLSSFRQKF--------------G  149 (280)
Q Consensus       124 ~v~~~~~~~~~----------------------------------------~~~~~~l~~~~~~~--------------a  149 (280)
                      +++|.......                                        .+...++....++.              |
T Consensus        83 ~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iA  162 (254)
T d1g6ha_          83 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG  162 (254)
T ss_dssp             ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             ccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHH
Confidence            33332111000                                        00011111111111              6


Q ss_pred             hhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563          150 SDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC  222 (280)
Q Consensus       150 ~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~  222 (280)
                      +||+.+|++|||||||+.      .+++++|++++++ |+|||++|||++++.+          +||||++|++ ++++.
T Consensus       163 raL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~vsHdl~~~~~----------~~Drv~vm~~G~iv~~  231 (254)
T d1g6ha_         163 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLN----------YIDHLYVMFNGQIIAE  231 (254)
T ss_dssp             HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGG----------GCSEEEEEETTEEEEE
T ss_pred             HHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHH----------hCCEEEEEeCCEEEEE
Confidence            799999999999999764      4689999999876 9999999999999986          9999999999 99999


Q ss_pred             cCcceee
Q 023563          223 GKRAFFT  229 (280)
Q Consensus       223 g~~~~~~  229 (280)
                      |+++|+.
T Consensus       232 g~~~e~~  238 (254)
T d1g6ha_         232 GRGEEEI  238 (254)
T ss_dssp             EESHHHH
T ss_pred             ecHHHHh
Confidence            9998865

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.7e-36  Score=262.44  Aligned_cols=162  Identities=19%  Similarity=0.214  Sum_probs=115.6

Q ss_pred             cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------
Q 023563           52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------  107 (280)
Q Consensus        52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------  107 (280)
                      ||+++||+|+|+.    ..||+||||+|++||++||+||||||||||+ ++|+|+..        +|+            
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl-~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~   79 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPTEGEVYIDNIKTNDLDDDELTK   79 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhh-HhccCCCCCCcceeEECCEEcCcCChhhcch
Confidence            6899999999953    2489999999999999999999999999999 99999832        222            


Q ss_pred             ----eEEEecCCccccc--ccceee------eec-c--------cccccccccCchH-HH------------HHH--hhh
Q 023563          108 ----NVAVIKSNKDTRY--GLDSIV------THD-G--------VKLPCCALTTLSS-FR------------QKF--GSD  151 (280)
Q Consensus       108 ----~i~~~~~~~~~~~--~~~~v~------~~~-~--------~~~~~~~~~~l~~-~~------------~~~--a~a  151 (280)
                          .+++++|+.....  .+...+      ... .        .....+...++.+ ++            +|.  |+|
T Consensus        80 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAra  159 (230)
T d1l2ta_          80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA  159 (230)
T ss_dssp             HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred             hhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhh
Confidence                2455555432110  000000      000 0        0000111222211 11            111  789


Q ss_pred             hccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563          152 AYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK  224 (280)
Q Consensus       152 L~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~  224 (280)
                      |+.+|++|||||||+.      .+++++|+++.++.|+|||++|||++++ +          +||||++|++ ++++.|+
T Consensus       160 L~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~----------~~drv~~m~~G~Iv~~g~  228 (230)
T d1l2ta_         160 LANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-R----------FGERIIYLKDGEVEREEK  228 (230)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-T----------TSSEEEEEETTEEEEEEE
T ss_pred             hhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-H----------hCCEEEEEECCEEEEecc
Confidence            9999999999999765      4699999999888899999999999987 4          8999999999 9998886


Q ss_pred             c
Q 023563          225 R  225 (280)
Q Consensus       225 ~  225 (280)
                      +
T Consensus       229 ~  229 (230)
T d1l2ta_         229 L  229 (230)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=2.5e-34  Score=253.60  Aligned_cols=164  Identities=16%  Similarity=0.159  Sum_probs=118.6

Q ss_pred             cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC------Ccccccccc
Q 023563           52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS------NKDTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~------~~~~~~~~~  123 (280)
                      ||+++||+|+|++ +.+|+||||+|++||++||+||||||||||+ ++|.|+.. ....|.+-..      ....+..++
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl-~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~   79 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIF-SLLERFYQPTAGEITIDGQPIDNISLENWRSQIG   79 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHH-HHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence            6899999999954 6799999999999999999999999999999 99999832 1112211110      011123334


Q ss_pred             eeeeecccccc---------------------ccc----------------------ccCch-HHHHHH--hhhhccCCC
Q 023563          124 SIVTHDGVKLP---------------------CCA----------------------LTTLS-SFRQKF--GSDAYDQVD  157 (280)
Q Consensus       124 ~v~~~~~~~~~---------------------~~~----------------------~~~l~-~~~~~~--a~aL~~~p~  157 (280)
                      +++|....+..                     ...                      -.+++ ..+++.  ||||+.+|+
T Consensus        80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~  159 (242)
T d1mv5a_          80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK  159 (242)
T ss_dssp             EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            44432111000                     000                      00111 111222  789999999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +|||||||+..      .+++.|+++.+  |+|+|+|||+++.+.           .||+|++|++ ++++.|++++++
T Consensus       160 ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~-----------~~D~i~vl~~G~iv~~G~~~eLl  225 (242)
T d1mv5a_         160 ILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTIV-----------DADKIYFIEKGQITGSGKHNELV  225 (242)
T ss_dssp             EEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSHHHHH-----------HCSEEEEEETTEECCCSCHHHHH
T ss_pred             EEEecCCccccCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence            99999998765      48999999874  899999999999885           7999999999 999999999987

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-34  Score=253.16  Aligned_cols=168  Identities=18%  Similarity=0.177  Sum_probs=120.1

Q ss_pred             CccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-----------
Q 023563           50 HSMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-----------  107 (280)
Q Consensus        50 ~~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-----------  107 (280)
                      +..|+++||+|+|++   ..+|+||||+|++||+++|+||||||||||+ ++|.|+..        +|.           
T Consensus         9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl-~li~gl~~p~~G~I~i~g~~i~~~~~~~~r   87 (251)
T d1jj7a_           9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVA-ALLQNLYQPTGGQLLLDGKPLPQYEHRYLH   87 (251)
T ss_dssp             CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred             cceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHH-HHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence            346999999999965   3599999999999999999999999999999 99999732        222           


Q ss_pred             -eEEEecCCccccc-c----cceeeeeccc---ccccccc----------------------cCchH-HHHHH--hhhhc
Q 023563          108 -NVAVIKSNKDTRY-G----LDSIVTHDGV---KLPCCAL----------------------TTLSS-FRQKF--GSDAY  153 (280)
Q Consensus       108 -~i~~~~~~~~~~~-~----~~~v~~~~~~---~~~~~~~----------------------~~l~~-~~~~~--a~aL~  153 (280)
                       .+++++|++.... .    +..-......   .......                      .+++. ..++.  ||||+
T Consensus        88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~  167 (251)
T d1jj7a_          88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI  167 (251)
T ss_dssp             HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred             HHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence             3455555442100 0    0000000000   0000000                      01211 11222  78999


Q ss_pred             cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563          154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA  226 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~  226 (280)
                      .+|++|||||||+.+      .+++.|.++.++.|+|+|+||||++.+.           .||+|++|++ ++++.|+++
T Consensus       168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-----------~aDrI~vl~~G~iv~~Gt~~  236 (251)
T d1jj7a_         168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-----------QADHILFLEGGAIREGGTHQ  236 (251)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-----------TCSEEEEEETTEEEEEECHH
T ss_pred             cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEECCHH
Confidence            999999999997764      4788888887767999999999999875           7999999999 999999999


Q ss_pred             eee
Q 023563          227 FFT  229 (280)
Q Consensus       227 ~~~  229 (280)
                      +++
T Consensus       237 eLl  239 (251)
T d1jj7a_         237 QLM  239 (251)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            987

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=9.3e-33  Score=242.33  Aligned_cols=159  Identities=18%  Similarity=0.131  Sum_probs=120.9

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccccc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGLD  123 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~~  123 (280)
                      .|++ ++.|+||+..+  ||||++. ||+++|+||||||||||+ ++|+|+..        +|.++.-+   ...+..++
T Consensus         2 ~l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll-~~i~Gl~~p~~G~I~~~G~~i~~~---~~~~r~ig   73 (240)
T d2onka1           2 FLKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFL-ELIAGIVKPDRGEVRLNGADITPL---PPERRGIG   73 (240)
T ss_dssp             CEEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTS---CTTTSCCB
T ss_pred             EEEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHH-HHHHcCCCCCceEEEECCEECCcC---CHHHcCce
Confidence            5788 57999999775  8999996 689999999999999999 99999842        34433211   12234566


Q ss_pred             eeeeeccccccc--------------------------ccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563          124 SIVTHDGVKLPC--------------------------CALTTLSSFRQKF--------------GSDAYDQVDVIGIDE  163 (280)
Q Consensus       124 ~v~~~~~~~~~~--------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE  163 (280)
                      +++|...+ ++.                          +...++.++++++              ||||+.+|++|||||
T Consensus        74 ~v~Q~~~l-~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDE  152 (240)
T d2onka1          74 FVPQDYAL-FPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE  152 (240)
T ss_dssp             CCCSSCCC-CTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred             eeccchhh-cccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecC
Confidence            66664322 111                          1112222222211              679999999999999


Q ss_pred             cccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          164 AQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       164 P~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |++.      ..+++.|++++++.|+|||++|||++++.+          +||||++|++ ++++.|+++++.
T Consensus       153 Pts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~----------~adri~vm~~G~ii~~G~~~el~  215 (240)
T d2onka1         153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM----------LADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEecHHHHh
Confidence            9764      458999999988779999999999999987          9999999999 999999999997

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.2e-32  Score=240.87  Aligned_cols=161  Identities=22%  Similarity=0.237  Sum_probs=116.6

Q ss_pred             EEEcCceEEe--CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEE
Q 023563           53 VSPRPPLFSL--QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVA  110 (280)
Q Consensus        53 l~~~~ls~~y--~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~  110 (280)
                      |+++||+|+|  +++.+|+||||+|++||++||+||||||||||+ ++|.|+..        +|.            .++
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl-~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~   80 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLT-KLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG   80 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence            6899999999  446799999999999999999999999999999 99999832        222            345


Q ss_pred             EecCCcccccccceeeee-----ccc----ccccccc----------------------cCch-HHHHHH--hhhhccCC
Q 023563          111 VIKSNKDTRYGLDSIVTH-----DGV----KLPCCAL----------------------TTLS-SFRQKF--GSDAYDQV  156 (280)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~-----~~~----~~~~~~~----------------------~~l~-~~~~~~--a~aL~~~p  156 (280)
                      +++|+... +. +.+...     ...    .......                      .+++ ..+.+.  ||||+.+|
T Consensus        81 ~v~Q~~~l-f~-~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p  158 (241)
T d2pmka1          81 VVLQDNVL-LN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP  158 (241)
T ss_dssp             EECSSCCC-TT-SBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             EEeccccc-CC-ccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence            55554321 00 000000     000    0000000                      0111 111222  78999999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++|||||||+.+      .+++.|+++.+  |+|+|+|||+++.+.           .||+|++|++ ++++.|++++++
T Consensus       159 ~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~-----------~~D~i~vl~~G~Iv~~G~~~ell  225 (241)
T d2pmka1         159 KILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTVK-----------NADRIIVMEKGKIVEQGKHKELL  225 (241)
T ss_dssp             SEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSGGGGT-----------TSSEEEEEETTEEEEEECHHHHH
T ss_pred             chhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence            999999997654      48888888864  899999999999875           7999999999 999999999997

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=3.1e-32  Score=241.58  Aligned_cols=164  Identities=15%  Similarity=0.127  Sum_probs=117.5

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i  109 (280)
                      -|+++||+|+|++  .++|+||||+|++||++||+||||||||||+ ++|.|+..        +|.            .+
T Consensus        13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl-~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i   91 (253)
T d3b60a1          13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIA-SLITRFYDIDEGHILMDGHDLREYTLASLRNQV   91 (253)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHH-HHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred             EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHH-HHHhcccCCCccEEEECCcccchhhhhhhhheE
Confidence            4999999999964  4699999999999999999999999999999 99999833        222            24


Q ss_pred             EEecCCcccccc-ccee--eee-cc----cccccccccCchHHH-----------------------HHH--hhhhccCC
Q 023563          110 AVIKSNKDTRYG-LDSI--VTH-DG----VKLPCCALTTLSSFR-----------------------QKF--GSDAYDQV  156 (280)
Q Consensus       110 ~~~~~~~~~~~~-~~~v--~~~-~~----~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p  156 (280)
                      ++++|+...... +...  +.. ..    ....++...++.++.                       +|.  ||||+.+|
T Consensus        92 ~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p  171 (253)
T d3b60a1          92 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS  171 (253)
T ss_dssp             EEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred             EEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCC
Confidence            455554321100 0000  000 00    000001111111111                       111  78999999


Q ss_pred             CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      ++|||||||+.+      .+++.|+++.+  ++|+|+||||++.+.           .||+|++|++ ++++.|++++++
T Consensus       172 ~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~-----------~~D~v~vl~~G~Iv~~G~~~eLl  238 (253)
T d3b60a1         172 PILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-----------QADEIVVVEDGIIVERGTHSELL  238 (253)
T ss_dssp             SEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGTT-----------TCSEEEEEETTEEEEEECHHHHH
T ss_pred             CEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence            999999997754      47888888864  899999999999774           7999999999 999999999987

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.4e-33  Score=245.69  Aligned_cols=163  Identities=17%  Similarity=0.122  Sum_probs=116.3

Q ss_pred             ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccc------ccccce
Q 023563           51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDT------RYGLDS  124 (280)
Q Consensus        51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~------~~~~~~  124 (280)
                      .+|+++||+++|    +|++|||+|++||++||+||||||||||+ ++|.|+......+.+..+....      .....+
T Consensus         2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl-~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~   76 (231)
T d1l7vc_           2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLL-ARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAY   76 (231)
T ss_dssp             EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHH-HHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred             eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCceEEEECCEECCcCCHHHHHhhcee
Confidence            378999998664    69999999999999999999999999999 9999986544445443332111      001112


Q ss_pred             eeeeccccc----------------------ccccccCchHH------------HHH--Hhhhhcc-------CCCEEEE
Q 023563          125 IVTHDGVKL----------------------PCCALTTLSSF------------RQK--FGSDAYD-------QVDVIGI  161 (280)
Q Consensus       125 v~~~~~~~~----------------------~~~~~~~l~~~------------~~~--~a~aL~~-------~p~lLlL  161 (280)
                      +.+.....+                      ......++.+.            .++  .|++|++       +|++|||
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llll  156 (231)
T d1l7vc_          77 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL  156 (231)
T ss_dssp             ECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred             eeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEE
Confidence            222111000                      00001111111            111  1667775       7799999


Q ss_pred             eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      |||++..      .++++|++++++ |+|||++|||++++.+          +||||++|++ ++++.|++++++
T Consensus       157 DEPt~gLD~~~~~~i~~~i~~l~~~-g~tii~vtHdl~~~~~----------~~dri~vl~~G~iv~~G~~~ev~  220 (231)
T d1l7vc_         157 DEPMNSLDVAQQSALDKILSALCQQ-GLAIVMSSHDLNHTLR----------HAHRAWLLKGGKMLASGRREEVL  220 (231)
T ss_dssp             SSCSTTCCHHHHHHHHHHHHHHHHT-TCEEEECCCCHHHHHH----------HCSBCCBEETTEECCCSBHHHHS
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------HCCEEEEEECCEEEEECCHHHHh
Confidence            9997654      588999999886 9999999999999986          9999999999 999999999998

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=1.3e-31  Score=237.56  Aligned_cols=164  Identities=12%  Similarity=0.140  Sum_probs=117.3

Q ss_pred             cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------eeE
Q 023563           52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RNV  109 (280)
Q Consensus        52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~i  109 (280)
                      -|+++||+|+|++  .++|+||||+|++||+++|+||||||||||+ ++|.|+..        +|            +.+
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl-~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i   94 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLI-NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI   94 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHH-TTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHH-HHHHhcCCccccccccCCEEcccCCHHHhhhee
Confidence            4999999999965  5699999999999999999999999999999 99999733        22            234


Q ss_pred             EEecCCcccccc-ccee--eeecc----cccccccccCchHH-----------------------HHHH--hhhhccCCC
Q 023563          110 AVIKSNKDTRYG-LDSI--VTHDG----VKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVD  157 (280)
Q Consensus       110 ~~~~~~~~~~~~-~~~v--~~~~~----~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~  157 (280)
                      ++++|+...... +...  +....    ....++...++.++                       ..|.  ||||+.+|+
T Consensus        95 ~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~  174 (255)
T d2hyda1          95 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP  174 (255)
T ss_dssp             EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred             eeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCC
Confidence            555554321000 0000  00000    00001111112111                       1111  789999999


Q ss_pred             EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                      +|||||||+.+      .+++.|.++.+  ++|+|+|||+++.+.           .||+|++|++ ++++.|++++++
T Consensus       175 ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~~~~~-----------~~D~ii~l~~G~iv~~G~~~eLl  240 (255)
T d2hyda1         175 ILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTIT-----------HADKIVVIENGHIVETGTHRELI  240 (255)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGTT-----------TCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence            99999997754      47888887764  899999999999875           7999999999 999999999988

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=8.6e-30  Score=228.91  Aligned_cols=163  Identities=21%  Similarity=0.165  Sum_probs=110.4

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-------CCeeEEEecCCccccc----
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-------KGRNVAVIKSNKDTRY----  120 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-------~g~~i~~~~~~~~~~~----  120 (280)
                      -|+++|++  |+++++|+||||+|++||++||+||||||||||+ ++|.|+..       .+.+++|++|......    
T Consensus        38 ~i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl-~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~  114 (281)
T d1r0wa_          38 NVSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL-MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIK  114 (281)
T ss_dssp             --CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHH
T ss_pred             cEEEEEcC--CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHH-HHHhCCCcCCCcEEEECCEEEEEeccccccCceee
Confidence            35556554  4678999999999999999999999999999999 99999732       2336788888653211    


Q ss_pred             -ccceeeeecc-cccc------------cc--------c--ccCch-HHHHHH--hhhhccCCCEEEEeCcccHHH----
Q 023563          121 -GLDSIVTHDG-VKLP------------CC--------A--LTTLS-SFRQKF--GSDAYDQVDVIGIDEAQFFED----  169 (280)
Q Consensus       121 -~~~~v~~~~~-~~~~------------~~--------~--~~~l~-~~~~~~--a~aL~~~p~lLlLDEP~~~~~----  169 (280)
                       ++..-..... ....            .+        .  ..+++ ....+.  ||||+.+|++|||||||+..|    
T Consensus       115 eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~  194 (281)
T d1r0wa_         115 ENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE  194 (281)
T ss_dssp             HHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHH
T ss_pred             ccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHH
Confidence             0000000000 0000            00        0  00122 122222  789999999999999988765    


Q ss_pred             --HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563          170 --LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT  229 (280)
Q Consensus       170 --i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~  229 (280)
                        +++.+..... .|+|+|++||+++.+.           +||||++|++ ++++.|+++++.
T Consensus       195 ~~i~~~~~~~~~-~~~tvi~itH~~~~l~-----------~aDrI~vl~~G~i~~~Gt~~eL~  245 (281)
T d1r0wa_         195 EQVFESCVCKLM-ANKTRILVTSKMEHLR-----------KADKILILHQGSSYFYGTFSELQ  245 (281)
T ss_dssp             HHHHHHCCCCCT-TTSEEEEECSCHHHHH-----------TCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHHHHhh-CCCEEEEEechHHHHH-----------hCCEEEEEECCEEEEECCHHHHh
Confidence              2322212222 3899999999998774           8999999999 999999999986

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.95  E-value=8.6e-28  Score=205.79  Aligned_cols=150  Identities=13%  Similarity=0.154  Sum_probs=98.4

Q ss_pred             cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-------eEEEecCCc
Q 023563           52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-------NVAVIKSNK  116 (280)
Q Consensus        52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-------~i~~~~~~~  116 (280)
                      .|+++||+++|++ ++|+||||+|++||++||+||||||||||+ ++|+|+..        +|.       .+.++++..
T Consensus         2 ~lev~~ls~~y~~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl-~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~   79 (200)
T d1sgwa_           2 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLL-KTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI   79 (200)
T ss_dssp             EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred             eEEEEEEEEEeCC-eEEeceEEEEcCCCEEEEECCCCChHHHHH-HHHhcccccCCCEEEECCEehhHhcCcEEEEeecc
Confidence            4899999999964 799999999999999999999999999999 99999732        222       234444432


Q ss_pred             cccccc--ceeee----------eccccccccccc----------Cch-HHHHH--HhhhhccCCCEEEEeCcccH----
Q 023563          117 DTRYGL--DSIVT----------HDGVKLPCCALT----------TLS-SFRQK--FGSDAYDQVDVIGIDEAQFF----  167 (280)
Q Consensus       117 ~~~~~~--~~v~~----------~~~~~~~~~~~~----------~l~-~~~~~--~a~aL~~~p~lLlLDEP~~~----  167 (280)
                      .....+  ...+.          ........+...          +++ ...++  .|++|+.+|++||||||++.    
T Consensus        80 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~  159 (200)
T d1sgwa_          80 IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED  159 (200)
T ss_dssp             CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred             cCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHH
Confidence            211110  00000          000000000000          111 11111  16799999999999999654    


Q ss_pred             --HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          168 --EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       168 --~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                        ..+++.|.++.++.+++||+++|+++              +||++..|+.
T Consensus       160 ~~~~i~~~l~~~~~~~~~~ii~~~~~l~--------------~~D~~~~l~~  197 (200)
T d1sgwa_         160 SKHKVLKSILEILKEKGIVIISSREELS--------------YCDVNENLHK  197 (200)
T ss_dssp             THHHHHHHHHHHHHHHSEEEEEESSCCT--------------TSSEEEEGGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEEechhh--------------hcchhhheee
Confidence              45889999988775666666666653              8999988864

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.62  E-value=6.5e-16  Score=124.23  Aligned_cols=136  Identities=34%  Similarity=0.621  Sum_probs=109.1

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ  155 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~  155 (280)
                      ..|.+..|+||+.|||||-|++.+..+...|+++..+.+..+.|+....+..+.+...++....+...+.+.    +..+
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D~Ry~~~~i~sh~g~~~~a~~~~~~~~~~~~----~~~~   80 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKY----FEED   80 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHH----CCTT
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEeccccccccceeeecccceEEEEEecchhhhhhh----hccc
Confidence            368999999999999999998888888889999999999888888877777777776666666666665543    3468


Q ss_pred             CCEEEEeCcccHHH-HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          156 VDVIGIDEAQFFED-LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       156 p~lLlLDEP~~~~~-i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                      ++++++||.+|..+ +.+.+..+.+. |++|++.+.|.++-.++|+++.+|+++||+|.-|+
T Consensus        81 ~dvI~IDE~QFf~d~~~~~~~~l~~~-g~~Viv~GLd~Df~~~~F~~~~~Ll~~Ad~v~kLk  141 (141)
T d1xx6a1          81 TEVIAIDEVQFFDDEIVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ  141 (141)
T ss_dssp             CSEEEECSGGGSCTHHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             ccEEEEeehhhccccHHHHHHhheeC-CcEEEEEEeccccccCccchHHHHHhhcCeeEECC
Confidence            99999999988765 55677777765 99999999999999999999999999999998764

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.9e-15  Score=120.24  Aligned_cols=132  Identities=46%  Similarity=0.753  Sum_probs=100.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCC
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQV  156 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p  156 (280)
                      +|.+..|+||+.|||||-|++.+..+...|+++..+.+..+.|+.... ..+.....+.....+.......     ..++
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D~R~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~   74 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSF-CTHDRNTMEALPACLLRDVAQE-----ALGV   74 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCC---------------CEEESSGGGGHHH-----HHTC
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEecccccCCccee-eecCCCcceeeeeechhhhhhh-----hccc
Confidence            589999999999999999988888888889999999988888776432 2333322233333333333322     3489


Q ss_pred             CEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563          157 DVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL  215 (280)
Q Consensus       157 ~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L  215 (280)
                      +++++||.++..++.+.+..+.+. |++|++.+.|.++..++|+.+.+|+++||+|.-|
T Consensus        75 d~I~IDEaQFf~dl~~~~~~~~~~-~~~Viv~GLd~Df~~~~F~~~~~Ll~~Ad~I~kL  132 (133)
T d1xbta1          75 AVIGIDEGQFFPDIVEFCEAMANA-GKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL  132 (133)
T ss_dssp             SEEEESSGGGCTTHHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred             ceEEeehhHHHHHHHHHHHHHHhc-CCcEEEEEeccccccCcchhHHHHHHhcCEEEec
Confidence            999999999998988888888775 9999999999999999999999999999999865

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=99.55  E-value=9.1e-15  Score=117.16  Aligned_cols=136  Identities=35%  Similarity=0.587  Sum_probs=106.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHH-hhhhccCC
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKF-GSDAYDQV  156 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~-a~aL~~~p  156 (280)
                      |.+..++||+.|||||-|++.+..+...|+++..+.+..+.|+. ..+..+.+...++.......++.+.. ......++
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R~~-~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSI-RNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDET   80 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGC-SSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEccccccc-ceEEcccCceeeeEEeccchhhHHHHHhhccccCc
Confidence            78899999999999997768888888899999999988887764 34555666555555555555554433 22344689


Q ss_pred             CEEEEeCcccHHH-HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563          157 DVIGIDEAQFFED-LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL  215 (280)
Q Consensus       157 ~lLlLDEP~~~~~-i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L  215 (280)
                      ++++.||.++..+ +.+.+..+.+ .|++|++.+.|.++-.++|+.+.+|+++||.|.-|
T Consensus        81 dvI~IDE~QFf~d~i~~~~~~~~~-~g~~Viv~GLd~Df~~~~F~~~~~Li~~Ad~V~kL  139 (139)
T d2b8ta1          81 KVIGIDEVQFFDDRICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL  139 (139)
T ss_dssp             CEEEECSGGGSCTHHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred             CEEEechhhhcchhHHHHHHHHHh-cCceEEEEEeccccccCcCccHHHHHHhhCeEEeC
Confidence            9999999988865 4455555555 59999999999999999999999999999999753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.42  E-value=5.1e-14  Score=114.67  Aligned_cols=62  Identities=19%  Similarity=0.123  Sum_probs=47.2

Q ss_pred             hhhhccCCCEEEEeCccc----HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563          149 GSDAYDQVDVIGIDEAQF----FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF  221 (280)
Q Consensus       149 a~aL~~~p~lLlLDEP~~----~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~  221 (280)
                      +.++..+|++|++|||..    ...+.+.+.++.++.+.++|+++|+.....           +||++..+.+ +++.
T Consensus        93 ~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~~-----------~~~~i~~~~~~~i~~  159 (178)
T d1ye8a1          93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHP-----------LVKEIRRLPGAVLIE  159 (178)
T ss_dssp             HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSH-----------HHHHHHTCTTCEEEE
T ss_pred             HHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHHHH-----------hhceEEEEeCCEEEE
Confidence            456778999999999843    245677777777666899999999876433           7898888887 6653

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.71  E-value=2e-08  Score=85.68  Aligned_cols=115  Identities=17%  Similarity=0.125  Sum_probs=59.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHH---h--hhh
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKF---G--SDA  152 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~---a--~aL  152 (280)
                      ++++.|.|||.+||||++ |.++-..+..+--.+++.....-..+..++.+.+....  ...+.+.+....   .  ...
T Consensus        35 ~~~~iiTGpN~~GKSt~l-k~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~~~~~~d~--~~~~~StF~~el~~~~~il~~  111 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFL-RQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDD--LAGGKSTFMVEMEEVALILKE  111 (224)
T ss_dssp             SCEEEEESCSSSSHHHHH-HHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC--------CCSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCccccchhh-hhhHHHHHHHhccceeecCceEEeecceEEEEECCCcc--ccCCccHHHHhHHHHHHHhcc
Confidence            358999999999999999 76554322111111112111111111222222111110  012222222211   1  123


Q ss_pred             ccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          153 YDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       153 ~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      +.+..++|+||+   |.-.+    .+.+++.+.+. +..++++||..+...
T Consensus       112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~-~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHER-RAYTLFATHYFELTA  161 (224)
T ss_dssp             CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEECCCHHHHT
T ss_pred             CCCCcEEeecccccCcchhhhcchHHHHHHHHhhc-CcceEEeeechhhhh
Confidence            467789999999   44332    45666777665 889999999987654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=1.6e-08  Score=86.80  Aligned_cols=127  Identities=16%  Similarity=0.123  Sum_probs=62.1

Q ss_pred             eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHH
Q 023563           66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFR  145 (280)
Q Consensus        66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~  145 (280)
                      .+=+|++++ +.+.++.|.|||.+||||+| |.++-..+..+--.+++.....-..+..++.+.+.....  ..+.+.+.
T Consensus        30 ~VpNdi~l~-~~~~~~iiTGpN~~GKSt~l-k~i~l~~~laq~G~~VpA~~a~~~~~d~I~~~~~~~d~~--~~~~S~F~  105 (234)
T d1wb9a2          30 FIANPLNLS-PQRRMLIITGPNMGGKSTYM-RQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDL--ASGRSTFM  105 (234)
T ss_dssp             CCCEEEEEC-SSSCEEEEECCTTSSHHHHH-HHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-------------CH
T ss_pred             ccceeEEEC-CCceEEEEeccCchhhHHHH-HHHHHHHHHHHcCCeEecCceecccchhheeEEccCccc--ccchhHHH
Confidence            344555554 33578999999999999999 766443211110011121111111112222221110000  01111111


Q ss_pred             HH---Hh--hhhccCCCEEEEeCc---cc---HHH-HHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563          146 QK---FG--SDAYDQVDVIGIDEA---QF---FED-LYDFCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       146 ~~---~a--~aL~~~p~lLlLDEP---~~---~~~-i~~~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      ..   ..  ...+.+..++|+||+   |.   +.. .+..+..+..+.+..++++||..+...
T Consensus       106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             HHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            11   11  112556779999999   33   222 355677776654678899999876553

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.65  E-value=3.6e-08  Score=86.06  Aligned_cols=52  Identities=17%  Similarity=0.145  Sum_probs=39.8

Q ss_pred             hccCCCEEEEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563          152 AYDQVDVIGIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT  216 (280)
Q Consensus       152 L~~~p~lLlLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~  216 (280)
                      ....+.++++|||..      ...+.+.|++..+  +.-||++||....+.           .+|+++.+.
T Consensus       238 ~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~~~~-----------~~d~~~~v~  295 (308)
T d1e69a_         238 EIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNKIVME-----------AADLLHGVT  295 (308)
T ss_dssp             TTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCTTGGG-----------GCSEEEEEE
T ss_pred             hhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHH-----------hcccEEEEE
Confidence            356889999999943      3457777777754  678999999998875           689887654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=98.36  E-value=1.2e-06  Score=73.56  Aligned_cols=143  Identities=13%  Similarity=0.092  Sum_probs=80.7

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccc--------ccc--ceeeeeccc-cc-ccccccCch
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTR--------YGL--DSIVTHDGV-KL-PCCALTTLS  142 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~--------~~~--~~v~~~~~~-~~-~~~~~~~l~  142 (280)
                      +++|+++.|.||+|||||||++.++......+..+.++.-.....        .+.  ......... .. .........
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE  102 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhhHH
Confidence            889999999999999999999777766666777777775432210        000  000000000 00 001112233


Q ss_pred             HHHHHHhhh-hccCCCEEEEeCccc------H---HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceE
Q 023563          143 SFRQKFGSD-AYDQVDVIGIDEAQF------F---EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSV  212 (280)
Q Consensus       143 ~~~~~~a~a-L~~~p~lLlLDEP~~------~---~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i  212 (280)
                      ...+....+ --.+|+++++|--+.      .   ......+.+++++.+.+++++.|--............+..+||-+
T Consensus       103 ~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~v  182 (242)
T d1tf7a2         103 DHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTI  182 (242)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEE
T ss_pred             HHHHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceE
Confidence            333333222 235899999997521      1   234444555556679999999885332222122233455689999


Q ss_pred             EEeec
Q 023563          213 TKLTA  217 (280)
Q Consensus       213 ~~L~~  217 (280)
                      +.|..
T Consensus       183 i~l~~  187 (242)
T d1tf7a2         183 ILLQY  187 (242)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88876

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=98.17  E-value=1.5e-06  Score=74.60  Aligned_cols=143  Identities=15%  Similarity=0.160  Sum_probs=79.5

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCcccccccceeee-------ec-----------cc----
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNKDTRYGLDSIVT-------HD-----------GV----  131 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~~~~~~~~~v~~-------~~-----------~~----  131 (280)
                      +.+|+++.|.|++|+|||||+..++..+ ...|.++.++............+..       ..           ..    
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQW  111 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccchhhHHhHHHHHhhcCCchhhcccccchhhhHHHHHH
Confidence            7899999999999999999995555454 3457788777644322110000000       00           00    


Q ss_pred             -----------ccccccccCchHHHHHHhh-hhccCCCEEEEeCccc-------------HHHHHHHHHHHHhhcCCEEE
Q 023563          132 -----------KLPCCALTTLSSFRQKFGS-DAYDQVDVIGIDEAQF-------------FEDLYDFCREAADHDGKTVI  186 (280)
Q Consensus       132 -----------~~~~~~~~~l~~~~~~~a~-aL~~~p~lLlLDEP~~-------------~~~i~~~l~~l~~~~g~tvi  186 (280)
                                 ............+...... .-..+|+++++|=-+.             ...++..|++++++.|++|+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi  191 (277)
T d1cr2a_         112 FDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLV  191 (277)
T ss_dssp             HHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEE
T ss_pred             HHHhhccceeeeeccccchhHHHHHHHhhhhhhccCcceEEEcccccccccccccchhHHHHHHHHHHHHHhhhccccce
Confidence                       0000000111112211111 1235899999996511             12367778999988999999


Q ss_pred             EEEechhHhh------------hccCCccccccccceEEEeec
Q 023563          187 VAGLDGDYLR------------RSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       187 ivtHdl~~~~------------~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      +++|-.....            .-+.+...+...||-++.|..
T Consensus       192 ~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r  234 (277)
T d1cr2a_         192 VICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER  234 (277)
T ss_dssp             EEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred             eecccccccccccccccccchhhhcccccchhhhCcEEEEEEe
Confidence            9999543221            124445566668999999865

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.5e-05  Score=66.76  Aligned_cols=101  Identities=17%  Similarity=0.137  Sum_probs=56.9

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeee------ecccc-cccccccCchHHHHHH
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVT------HDGVK-LPCCALTTLSSFRQKF  148 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~------~~~~~-~~~~~~~~l~~~~~~~  148 (280)
                      +.-.+++++||+|+||||++.|+...+...|+++..+.-+...   .+.+-|      ..+.. .......++.....+.
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R---~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~   83 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR---AAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDA   83 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC---HHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc---ccchhhhhhhhhhcCCcccccccCCCHHHHHHHH
Confidence            3346899999999999999977666666778889888765321   111111      00000 0011112333333322


Q ss_pred             -hhhhccCCCEEEEeCc---ccHHHHHHHHHHHHh
Q 023563          149 -GSDAYDQVDVIGIDEA---QFFEDLYDFCREAAD  179 (280)
Q Consensus       149 -a~aL~~~p~lLlLDEP---~~~~~i~~~l~~l~~  179 (280)
                       ..+-..+-+++|+|=|   ..-..+++.++++.+
T Consensus        84 ~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~  118 (211)
T d2qy9a2          84 IQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVR  118 (211)
T ss_dssp             HHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHH
Confidence             1233568899999999   233345566665543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.91  E-value=1.1e-05  Score=67.56  Aligned_cols=101  Identities=18%  Similarity=0.150  Sum_probs=56.1

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeee------cccc-cccccccCchHHHH-H
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTH------DGVK-LPCCALTTLSSFRQ-K  147 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~------~~~~-~~~~~~~~l~~~~~-~  147 (280)
                      .+..+++++||+|+||||++.|+...+...|++++++.-+.. |  ++.+-|-      .+.. .......++..... .
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~-R--~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~   85 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF-R--AAAIEQLKIWGERVGATVISHSEGADPAAVAFDA   85 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT-C--HHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccc-c--cchhHHHHHHhhhcCccccccCCCCcHHHHHHHH
Confidence            355689999999999999996766666667888887765432 1  1111110      0000 00011122222222 1


Q ss_pred             HhhhhccCCCEEEEeCc---ccHHHHHHHHHHHHh
Q 023563          148 FGSDAYDQVDVIGIDEA---QFFEDLYDFCREAAD  179 (280)
Q Consensus       148 ~a~aL~~~p~lLlLDEP---~~~~~i~~~l~~l~~  179 (280)
                      ...+...+-+++|+|=|   ..-.++++.+.++.+
T Consensus        86 ~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~  120 (213)
T d1vmaa2          86 VAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHR  120 (213)
T ss_dssp             HHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEeccccccchHHHHHHHHHHHh
Confidence            23445668899999998   223345555555543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=3.6e-06  Score=66.04  Aligned_cols=36  Identities=28%  Similarity=0.237  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN  115 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~  115 (280)
                      +++|+|++|||||||+.+++..+...|.+++.+...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d   39 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT   39 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEeccc
Confidence            789999999999999944444456667777665443

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.89  E-value=3.3e-05  Score=63.29  Aligned_cols=40  Identities=15%  Similarity=0.124  Sum_probs=29.2

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHh-cchhCCeeEEEecC
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQ-AETQKGRNVAVIKS  114 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~-gl~~~g~~i~~~~~  114 (280)
                      +++|+++.|.|++|+|||||++.++. +....+..+.++..
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~   63 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF   63 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccc
Confidence            88999999999999999999844443 33334445555543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.88  E-value=1.3e-05  Score=66.83  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=31.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK  116 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~  116 (280)
                      ++.+++++||+|+||||++.|+..-+...|+++.++.-+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt   44 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT   44 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            5789999999999999999666555556788888876553

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.82  E-value=6.2e-06  Score=65.40  Aligned_cols=37  Identities=27%  Similarity=0.455  Sum_probs=29.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN  115 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~  115 (280)
                      .+++|+|++|||||||+.+++..|...|.+++.+..+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d   38 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH   38 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            3789999999999999955666677778888777544

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=4e-05  Score=65.05  Aligned_cols=65  Identities=6%  Similarity=0.013  Sum_probs=40.8

Q ss_pred             ccCCCEEEEeCccc-----------HHHHHHHHHHHHhhcCCEEEEEEechhHhh--------hccCCccccccccceEE
Q 023563          153 YDQVDVIGIDEAQF-----------FEDLYDFCREAADHDGKTVIVAGLDGDYLR--------RSFGSVIDIIPLADSVT  213 (280)
Q Consensus       153 ~~~p~lLlLDEP~~-----------~~~i~~~l~~l~~~~g~tviivtHdl~~~~--------~~~~~~~~ll~~aD~i~  213 (280)
                      ..+|+++++|--..           ..+++..|+.++.+.|++||++.|--....        ...-+...|...||.++
T Consensus       130 ~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~  209 (274)
T d1nlfa_         130 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQS  209 (274)
T ss_dssp             HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEE
T ss_pred             ccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhccccccccCCcccccccccHHHHHhhccEEE
Confidence            46899999996521           124667777888778999999999432111        11224455677889999


Q ss_pred             Eeec
Q 023563          214 KLTA  217 (280)
Q Consensus       214 ~L~~  217 (280)
                      .|..
T Consensus       210 ~l~r  213 (274)
T d1nlfa_         210 YLSS  213 (274)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8875

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=5.4e-07  Score=72.06  Aligned_cols=31  Identities=19%  Similarity=0.148  Sum_probs=25.9

Q ss_pred             eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      +++.+|++.+| +++|+|||||||||++ .+|.
T Consensus        15 ~~~~~i~f~~~-~tvi~G~NGsGKStil-~Ai~   45 (222)
T d1qhla_          15 FFARTFDLDEL-VTTLSGGNGAGKSTTM-AAFV   45 (222)
T ss_dssp             EEEEEECHHHH-HHHHHSCCSHHHHHHH-HHHH
T ss_pred             EeeEEEEcCCC-eEEEECCCCCCHHHHH-HHHH
Confidence            56778888776 9999999999999999 5543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.67  E-value=7.1e-05  Score=66.33  Aligned_cols=107  Identities=18%  Similarity=0.145  Sum_probs=65.2

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccc-ceeeeecccccccccccCchHHHHHHhhhhc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGL-DSIVTHDGVKLPCCALTTLSSFRQKFGSDAY  153 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~  153 (280)
                      +..|.-+.|.||.|||||||+ +.+.++.....++..+.........- ..+++-..     .....+.++..   .+|=
T Consensus       163 v~~~~nili~G~tgSGKTT~l-~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~-----~~~~~~~~ll~---~~lR  233 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYI-KSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFF-----GGNITSADCLK---SCLR  233 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEEC-----BTTBCHHHHHH---HHTT
T ss_pred             HHhCCCEEEEeeccccchHHH-HHHhhhcccccceeeccchhhhhcccccccceecc-----ccchhHHHHHH---HHhc
Confidence            344555899999999999999 98988776666776664433322111 11111100     01122333322   3556


Q ss_pred             cCCCEEEEeCcccHHHHHHHHHHHHhhcCC-EEEEEEechh
Q 023563          154 DQVDVIGIDEAQFFEDLYDFCREAADHDGK-TVIVAGLDGD  193 (280)
Q Consensus       154 ~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~-tviivtHdl~  193 (280)
                      ++|+.+++.|-... +.+++++.+..  |. .++.+.|--+
T Consensus       234 ~~pd~iivgEiR~~-ea~~~l~a~~t--Gh~g~~tT~Ha~s  271 (323)
T d1g6oa_         234 MRPDRIILGELRSS-EAYDFYNVLCS--GHKGTLTTLHAGS  271 (323)
T ss_dssp             SCCSEEEESCCCST-HHHHHHHHHHT--TCSCEEEEECCSS
T ss_pred             cCCCcccCCccCch-hHHHHHHHHHh--cCCcEEEEECCCC
Confidence            79999999999765 45667765543  64 4778888544

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=0.00018  Score=61.79  Aligned_cols=136  Identities=21%  Similarity=0.207  Sum_probs=71.2

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccc------cccceeeeecccccccccccCchHHHHHH
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTR------YGLDSIVTHDGVKLPCCALTTLSSFRQKF  148 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~l~~~~~~~  148 (280)
                      ++.|.++-|.||+|||||||++.++......|..+.|+.-.....      .++.    -+....  ......++..+..
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd----~d~v~~--~~~~~~E~~~~~i  124 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVD----IDNLLC--SQPDTGEQALEIC  124 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCC----GGGCEE--ECCSSHHHHHHHH
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCC----HHHEEE--ecCCCHHHHHHHH
Confidence            789999999999999999999776666666777777775443221      1110    011100  0011122222211


Q ss_pred             hhhh--ccCCCEEEEeCcccH-------------------H---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCc--
Q 023563          149 GSDA--YDQVDVIGIDEAQFF-------------------E---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSV--  202 (280)
Q Consensus       149 a~aL--~~~p~lLlLDEP~~~-------------------~---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~--  202 (280)
                       ..|  -.+++++++|=-++.                   .   ..+..+..++.+.+.++|++.|-.......|++-  
T Consensus       125 -~~l~~~~~~~liViDSi~al~~~~e~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~~~~~vi~~NQv~~~~~~~~g~~~~  203 (263)
T d1u94a1         125 -DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET  203 (263)
T ss_dssp             -HHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------
T ss_pred             -HHHHhcCCCCEEEEECccccccchhcccccccchHHHHHHHHHHHHHHHHHhhhccCceEEEEEEEEeccccccCCCcc
Confidence             112  257899999976210                   0   2334445555567999999999655444333321  


Q ss_pred             ---cccc-cccceEEEeec
Q 023563          203 ---IDII-PLADSVTKLTA  217 (280)
Q Consensus       203 ---~~ll-~~aD~i~~L~~  217 (280)
                         ...+ -++|-++.|+.
T Consensus       204 ~~GG~al~~~~~~rl~l~k  222 (263)
T d1u94a1         204 TTGGNALKFYASVRLDIRR  222 (263)
T ss_dssp             CTTCSHHHHHCSEEEEEEE
T ss_pred             ccccchhheeeEEEEEEEe
Confidence               1122 34666666655

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.62  E-value=0.00021  Score=64.88  Aligned_cols=107  Identities=19%  Similarity=0.156  Sum_probs=60.9

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhcc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYD  154 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~  154 (280)
                      .++-++.|.||.||||||++ ..+.. +...++++..+......  .+..+.|..-   .   ...-..+......+|=+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl-~~~l~~~~~~~~~i~tiEdPiE~--~~~~~~q~~v---~---~~~~~~~~~~l~~~lR~  226 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTL-YAGLQELNSSERNILTVEDPIEF--DIDGIGQTQV---N---PRVDMTFARGLRAILRQ  226 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHH-HHHHHHHCCTTSCEEEEESSCCS--CCSSSEEEEC---B---GGGTBCHHHHHHHHGGG
T ss_pred             hhhceEEEEcCCCCCccHHH-HHHhhhhcCCCceEEEeccCccc--ccCCCCeeee---c---CCcCCCHHHHHHHHHhh
Confidence            34568999999999999999 54444 32334555544333222  1111222100   0   01111233333345668


Q ss_pred             CCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechh
Q 023563          155 QVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGD  193 (280)
Q Consensus       155 ~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~  193 (280)
                      +||+|++.|..-.......+ +.+.. |..|+-+-|--+
T Consensus       227 dPDvi~igEiRd~~ta~~a~-~aa~t-GhlV~tTlHa~~  263 (401)
T d1p9ra_         227 DPDVVMVGEIRDLETAQIAV-QASLT-GHLVMSTLHTNT  263 (401)
T ss_dssp             CCSEEEESCCCSHHHHHHHH-HHHHT-TCEEEEEECCSS
T ss_pred             cCCEEEecCcCChHHHHHHH-HHHhc-CCeEEEEeccCc
Confidence            99999999996554443333 44443 998988888544

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.59  E-value=1.5e-05  Score=64.22  Aligned_cols=23  Identities=35%  Similarity=0.671  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      |.++.|+||+||||||++ +.|..
T Consensus         2 G~iivl~GpsG~GK~tl~-~~L~~   24 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVV-RCLRE   24 (182)
T ss_dssp             CCEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CeEEEEECCCCCCHHHHH-HHHHh
Confidence            889999999999999999 65543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.56  E-value=2e-05  Score=61.98  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .|+++.|.||+||||||+. +.+..
T Consensus         3 ~g~iI~l~G~~GsGKSTia-~~La~   26 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIA-EALAN   26 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHH-HHHHT
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHH
Confidence            5899999999999999999 87765

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=7.8e-05  Score=63.89  Aligned_cols=68  Identities=25%  Similarity=0.206  Sum_probs=38.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCCCE
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDV  158 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~l  158 (280)
                      .-+.|.||.|+|||+++ +.++...  +..+..+....-..    ..+.           ..-..+...+..|-...|.+
T Consensus        46 ~~iLL~GppGtGKT~la-~~iA~~~--~~~~~~i~~~~l~~----~~~g-----------~~~~~l~~~f~~A~~~~P~i  107 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLA-KAIAGEA--KVPFFTISGSDFVE----MFVG-----------VGASRVRDMFEQAKKAAPCI  107 (256)
T ss_dssp             CEEEEECCTTSCHHHHH-HHHHHHH--TCCEEEECSCSSTT----SCCC-----------CCHHHHHHHHHHHHTTCSEE
T ss_pred             CeEEeeCCCCCCccHHH-HHHHHHc--CCCEEEEEhHHhhh----cchh-----------HHHHHHHHHHHHHHHcCCEE
Confidence            44779999999999999 8887532  33333332211100    0000           11112233333444578999


Q ss_pred             EEEeCc
Q 023563          159 IGIDEA  164 (280)
Q Consensus       159 LlLDEP  164 (280)
                      |++||-
T Consensus       108 l~iDei  113 (256)
T d1lv7a_         108 IFIDEI  113 (256)
T ss_dssp             EEETTH
T ss_pred             EEEECh
Confidence            999998

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.54  E-value=2.1e-05  Score=61.66  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=22.1

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+|-++.|+|++||||||+. +.|+-
T Consensus         4 ~~g~~I~l~G~~GsGKTTia-~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIA-RALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            47999999999999999999 77764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=7.8e-05  Score=63.68  Aligned_cols=104  Identities=21%  Similarity=0.198  Sum_probs=54.5

Q ss_pred             eEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhh
Q 023563           73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDA  152 (280)
Q Consensus        73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL  152 (280)
                      +..++|  +.|.||.|+|||+++ +.++..  .+..+..+.......               ...-.....+...+..|-
T Consensus        35 ~~~~~g--iLL~GppGtGKT~l~-~ala~~--~~~~~~~i~~~~l~~---------------~~~g~~~~~l~~~f~~A~   94 (258)
T d1e32a2          35 VKPPRG--ILLYGPPGTGKTLIA-RAVANE--TGAFFFLINGPEIMS---------------KLAGESESNLRKAFEEAE   94 (258)
T ss_dssp             CCCCCE--EEEECCTTSSHHHHH-HHHHHH--TTCEEEEECHHHHTT---------------SCTTHHHHHHHHHHHHHH
T ss_pred             CCCCce--eEEecCCCCCchHHH-HHHHHH--hCCeEEEEEchhhcc---------------cccccHHHHHHHHHHHHH
Confidence            344555  779999999999999 888762  223332222110000               000001112223333445


Q ss_pred             ccCCCEEEEeCccc------------HHHHHHHHHHH----HhhcCCEEEEEEechhHhh
Q 023563          153 YDQVDVIGIDEAQF------------FEDLYDFCREA----ADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       153 ~~~p~lLlLDEP~~------------~~~i~~~l~~l----~~~~g~tviivtHdl~~~~  196 (280)
                      ...|.+|++||-..            ...+...+...    ....++-||.+|.+.+.+.
T Consensus        95 ~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld  154 (258)
T d1e32a2          95 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID  154 (258)
T ss_dssp             HTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSC
T ss_pred             hcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccc
Confidence            57999999999811            11122222222    2223556778898777554

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=2.7e-05  Score=61.05  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=22.0

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.+.++.|+||+||||||+. +.|+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a-~~La~   28 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVA-SEVAH   28 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            46789999999999999999 77765

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.48  E-value=0.00033  Score=54.36  Aligned_cols=23  Identities=26%  Similarity=0.393  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ..++.|.||+||||||+. +.|..
T Consensus         3 ~kiI~l~G~~GsGKsTva-~~L~~   25 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIV-RCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CeEEEEECCCCCCHHHHH-HHHHH
Confidence            468999999999999999 77765

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.45  E-value=0.00036  Score=60.09  Aligned_cols=119  Identities=18%  Similarity=0.128  Sum_probs=63.6

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeeccccccc---ccccCchHHHHHHhhh
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPC---CALTTLSSFRQKFGSD  151 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~l~~~~~~~a~a  151 (280)
                      |+.|.++-|.||+|||||||++.++......|..+.|+.........   ..++.+.....   ....+.++..+. ...
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~---~a~~~Gvd~d~i~~~~~~~~E~~~~~-~~~  129 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV---YARALGVNTDELLVSQPDNGEQALEI-MEL  129 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHH-HHH
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHH---HHHHhCCCchhEEEEcCCCHHHHHHH-HHH
Confidence            78999999999999999999966665556667777777654322110   00110100000   001122222221 112


Q ss_pred             hc--cCCCEEEEeCccc------------------HH----HHHHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563          152 AY--DQVDVIGIDEAQF------------------FE----DLYDFCREAADHDGKTVIVAGLDGDYLRR  197 (280)
Q Consensus       152 L~--~~p~lLlLDEP~~------------------~~----~i~~~l~~l~~~~g~tviivtHdl~~~~~  197 (280)
                      |+  .+++++++|=-++                  +.    ..+..|..++.+.+.++|++.|-..-...
T Consensus       130 l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv~~~~g~  199 (268)
T d1xp8a1         130 LVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGV  199 (268)
T ss_dssp             HHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC------
T ss_pred             HHhcCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhcCCeEEEEeEEeecccc
Confidence            22  3689999997611                  11    13334445555669999999997765543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.44  E-value=5.1e-05  Score=63.17  Aligned_cols=40  Identities=25%  Similarity=0.286  Sum_probs=31.9

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN  115 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~  115 (280)
                      +...++.|+||+|+||||++.|+...+...|+++..+.-+
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~D   47 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD   47 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecc
Confidence            3457899999999999999967666666778888877654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=5e-05  Score=65.28  Aligned_cols=104  Identities=17%  Similarity=0.121  Sum_probs=53.6

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhcc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYD  154 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~  154 (280)
                      ++...-+.|.||.|+|||+|+ +.+++..  +..+..+...        .+.       ....-.....+...+..|-..
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~-~ala~~~--~~~~~~~~~~--------~l~-------~~~~~~~~~~l~~~f~~A~~~   99 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLA-KAIANEC--QANFISIKGP--------ELL-------TMWFGESEANVREIFDKARQA   99 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHH-HHHHHHT--TCEEEEECHH--------HHH-------TSCTTTHHHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcchhHH-HHHHHHh--CCcEEEEEHH--------Hhh-------hccccchHHHHHHHHHHHHhc
Confidence            334445789999999999999 8887732  2232222110        000       000001112222333445567


Q ss_pred             CCCEEEEeCccc---------------HHHHHH----HHHHHHhhcCCEEEEEEechhHhh
Q 023563          155 QVDVIGIDEAQF---------------FEDLYD----FCREAADHDGKTVIVAGLDGDYLR  196 (280)
Q Consensus       155 ~p~lLlLDEP~~---------------~~~i~~----~l~~l~~~~g~tviivtHdl~~~~  196 (280)
                      .|-+|++||-..               ...+..    .+..+....+.-+|.+|++.+.+.
T Consensus       100 ~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld  160 (265)
T d1r7ra3         100 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID  160 (265)
T ss_dssp             CSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTS
T ss_pred             CCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCC
Confidence            899999999810               011222    222223334678889999887653

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.35  E-value=5.7e-05  Score=63.07  Aligned_cols=40  Identities=23%  Similarity=0.193  Sum_probs=28.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK  116 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~  116 (280)
                      ...+++|+||+|+||||++.|+..-+...|++++++.-+.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt   50 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV   50 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeec
Confidence            4578999999999999999676666666788888886553

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.35  E-value=0.00011  Score=62.45  Aligned_cols=20  Identities=35%  Similarity=0.496  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.|.||.|+|||+++ +.++.
T Consensus        45 iLl~GppGtGKT~la-~aia~   64 (247)
T d1ixza_          45 VLLVGPPGVGKTHLA-RAVAG   64 (247)
T ss_dssp             EEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEecCCCCChhHHH-HHHHH
Confidence            689999999999999 88876

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=5e-05  Score=59.43  Aligned_cols=30  Identities=27%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc-chhCCeeEE
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVA  110 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~  110 (280)
                      .+.|.||+|+|||||+ +.+.. +...+..+.
T Consensus         3 ~v~ItG~~GtGKTtl~-~~i~~~l~~~~~~v~   33 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLI-HKASEVLKSSGVPVD   33 (189)
T ss_dssp             CEEEESCCSSCHHHHH-HHHHHHHHHTTCCCE
T ss_pred             EEEEECCCCCcHHHHH-HHHHHHHHHCCCEEE
Confidence            5789999999999999 55554 333444443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.30  E-value=5.8e-05  Score=59.10  Aligned_cols=25  Identities=36%  Similarity=0.388  Sum_probs=21.8

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      |+|-.+.|.||+||||||+. +.|+-
T Consensus         3 pk~~~I~i~G~~GsGKTT~~-~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMA-EMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHH-HHHHH
Confidence            56778999999999999999 77754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.30  E-value=7.6e-05  Score=61.68  Aligned_cols=35  Identities=29%  Similarity=0.278  Sum_probs=27.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN  115 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~  115 (280)
                      +++|+||.|||||||+ +.|......++.++.+..+
T Consensus         2 vi~v~G~~GsGKTTLl-~~ll~~~~~~~~~~ivn~d   36 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLT-GEFGRYLEDNYKVAYVNLD   36 (244)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHHHTTTSCEEEEECC
T ss_pred             EEEEEcCCCCcHHHHH-HHHHHHHhhCCeEEEEecC
Confidence            6899999999999999 6665544566677766544

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=6e-05  Score=67.26  Aligned_cols=50  Identities=14%  Similarity=0.230  Sum_probs=38.9

Q ss_pred             cCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563          154 DQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL  215 (280)
Q Consensus       154 ~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L  215 (280)
                      .++++++||||.+.      ..+.++|.++... +.-+|++||+...+.           .||+++.+
T Consensus       353 ~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~-~~Q~I~iTH~~~~~~-----------~ad~~~~V  408 (427)
T d1w1wa_         353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP-DLQFIVISLKNTMFE-----------KSDALVGV  408 (427)
T ss_dssp             SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT-TBEEEEECSCHHHHT-----------TCSEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHH-----------hcccEEEE
Confidence            57789999999553      3577777777543 667999999999886           79998765

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=6.1e-05  Score=62.34  Aligned_cols=23  Identities=22%  Similarity=0.476  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHh
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      +|.++.|+||+|||||||+ +.|.
T Consensus         1 ~G~livi~GPSG~GK~tl~-~~L~   23 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLI-QALL   23 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHH-HHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHH
Confidence            6899999999999999999 5543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.27  E-value=6.5e-05  Score=58.78  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ..++|.||.|||||||+ +.|+.
T Consensus         8 K~I~i~G~~GsGKTTla-~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLV-NKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHH-HHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHH
Confidence            46899999999999999 77765

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=4.7e-05  Score=60.77  Aligned_cols=24  Identities=29%  Similarity=0.224  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +|-++.|+|++||||||+. +.|+-
T Consensus        18 ~g~vI~L~G~pGSGKTTiA-k~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVS-MALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHH-HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHH
Confidence            6889999999999999999 77754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.23  E-value=8.2e-05  Score=57.14  Aligned_cols=20  Identities=30%  Similarity=0.326  Sum_probs=17.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 023563           79 EIHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l   99 (280)
                      +++.|.||+||||||++ +.|
T Consensus         3 klIii~G~pGsGKTTla-~~L   22 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWA-REF   22 (152)
T ss_dssp             EEEEEECCTTSSHHHHH-HHH
T ss_pred             EEEEEECCCCCCHHHHH-HHH
Confidence            57889999999999999 644

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=7.3e-05  Score=57.22  Aligned_cols=21  Identities=43%  Similarity=0.547  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|+||+||||||+. +.|+-
T Consensus         4 ~I~l~G~~GsGKSTva-k~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIG-RQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHH-HHHHH
T ss_pred             eEEEECCCCCCHHHHH-HHHHH
Confidence            4678899999999999 77754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00022  Score=59.35  Aligned_cols=20  Identities=25%  Similarity=0.311  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.|.||.|+||||++ +.++.
T Consensus        36 lll~Gp~G~GKTt~~-~~la~   55 (252)
T d1sxje2          36 LLLYGPNGTGKKTRC-MALLE   55 (252)
T ss_dssp             EEEECSTTSSHHHHH-HTHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHH
Confidence            679999999999999 66654

>d1xbta2 g.39.1.14 (A:151-191) Thymidine kinase, TK1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Type II thymidine kinase zinc finger
domain: Thymidine kinase, TK1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=5e-05  Score=46.75  Aligned_cols=39  Identities=41%  Similarity=0.725  Sum_probs=33.8

Q ss_pred             eccccCcceeeeeecCCCcEEEeCCccceeeeccchhcc
Q 023563          219 CEFCGKRAFFTLRKTEETKTELIGGSDIYMPVCRQHYVS  257 (280)
Q Consensus       219 i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (280)
                      +..+|.++.+..|..++..+.++|+.+.|.++||+||.+
T Consensus         3 C~~Cg~~A~ft~R~~~~~~~v~IGg~d~Y~~~CR~cy~K   41 (41)
T d1xbta2           3 CMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYFK   41 (41)
T ss_dssp             CTTTCSEECEEEECSCCCSSCCCCSTTTEEEECHHHHTC
T ss_pred             CCCCCCcceEEEEEcCCCCEEEECCCCcEEehhhhhhcC
Confidence            456788888999988888888899999999999999963

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.16  E-value=9.2e-05  Score=58.96  Aligned_cols=21  Identities=29%  Similarity=0.267  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++||-||+|||||||. +.|.-
T Consensus        24 iIgI~G~~GSGKSTla-~~L~~   44 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLA-NQLSQ   44 (198)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            7999999999999999 66653

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.14  E-value=0.00011  Score=56.87  Aligned_cols=22  Identities=41%  Similarity=0.674  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++.|.||+||||||+. +.|+.
T Consensus         3 klI~i~G~~GsGKTTva-~~L~~   24 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTC-KRLAA   24 (176)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHH
Confidence            47899999999999999 76764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00013  Score=58.03  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=23.3

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|+++.|.||+|+|||||++.++..
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            789999999999999999999554443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.12  E-value=0.00076  Score=58.01  Aligned_cols=40  Identities=33%  Similarity=0.467  Sum_probs=31.0

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecC
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKS  114 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~  114 (280)
                      ++.|.++-|.||+|+|||||++.++......|..+.|+..
T Consensus        57 ~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDt   96 (269)
T d1mo6a1          57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA   96 (269)
T ss_dssp             BCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             cccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence            7899999999999999999985555554555666666543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.11  E-value=0.00012  Score=57.39  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+++|.||.||||||++ +.|.-
T Consensus         2 kiI~i~G~~GsGKsT~~-~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSS-QLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHH-HHHHH
T ss_pred             CEEEEECCCCCCHHHHH-HHHHH
Confidence            58999999999999999 66654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=0.00049  Score=55.24  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEec
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIK  113 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~  113 (280)
                      ++.++|.+||||||+. +.|+.. ...+.++..+.
T Consensus         4 li~l~GlpgsGKSTla-~~L~~~l~~~~~~~~~~~   37 (213)
T d1bifa1           4 LIVMVGLPARGKTYIS-KKLTRYLNFIGVPTREFN   37 (213)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHH-HHHHHHHHhcCCCCeEEc
Confidence            6899999999999999 767643 33455554443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.08  E-value=0.0016  Score=50.92  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.|+|||||+ +.|.|-
T Consensus         2 ~V~liG~~n~GKSsLi-~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLF-NKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHC-
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            5899999999999999 778773

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.07  E-value=0.00012  Score=56.92  Aligned_cols=19  Identities=26%  Similarity=0.289  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 023563           81 HVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~  100 (280)
                      +.|+||+||||||+. +.|+
T Consensus         7 I~i~G~pGsGKTTia-~~La   25 (173)
T d1rkba_           7 ILLTGTPGVGKTTLG-KELA   25 (173)
T ss_dssp             EEEECSTTSSHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHH-HHHH
Confidence            679999999999999 7664

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.06  E-value=0.00013  Score=61.38  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +|...+|+|+||+|||||+ +.|.+
T Consensus        94 ~~kt~~~~G~SGVGKSTLi-N~L~~  117 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLL-NAINP  117 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHH-HHHST
T ss_pred             cCCeEEEECCCCCCHHHHH-Hhhcc
Confidence            5899999999999999999 88876

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.02  E-value=0.00056  Score=57.83  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      -+.|.||.|+|||+++ +.++.
T Consensus        42 ~vLL~GppGtGKT~la-~alA~   62 (246)
T d1d2na_          42 SVLLEGPPHSGKTALA-AKIAE   62 (246)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHhh
Confidence            4679999999999999 88876

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.00  E-value=0.00074  Score=55.81  Aligned_cols=95  Identities=22%  Similarity=0.293  Sum_probs=54.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCCCEE
Q 023563           81 HVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVI  159 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~lL  159 (280)
                      +.|.||.|+|||-|+ ..++.- ...+..+.|+......        +   .....+.......+.+     .....++|
T Consensus        39 l~l~G~~G~GKTHLl-~A~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~-----~~~~~dll  101 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLL-QAAGNEAKKRGYRVIYSSADDFA--------Q---AMVEHLKKGTINEFRN-----MYKSVDLL  101 (213)
T ss_dssp             EEEECSSSSSHHHHH-HHHHHHHHHTTCCEEEEEHHHHH--------H---HHHHHHHHTCHHHHHH-----HHHTCSEE
T ss_pred             EEEECCCCCcHHHHH-HHHHHHhccCccceEEechHHHH--------H---HHHHHHHccchhhHHH-----HHhhccch
Confidence            569999999999999 777653 2233333333211000        0   0000111112223322     24589999


Q ss_pred             EEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEechh
Q 023563          160 GIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLDGD  193 (280)
Q Consensus       160 lLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHdl~  193 (280)
                      ++|+-..       ...+..++..+.+. |+.+|+++....
T Consensus       102 ~iDDi~~i~~~~~~~~~lf~lin~~~~~-~~~iiits~~~p  141 (213)
T d1l8qa2         102 LLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASDRHP  141 (213)
T ss_dssp             EEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEESSCG
T ss_pred             hhhhhhhhcCchHHHHHHHHHHHHHhhc-cceEEEecCCcc
Confidence            9999832       23478888877765 888888887543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.89  E-value=0.00027  Score=56.81  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +..++.|+||.||||||+. +.|+-
T Consensus         5 kp~iI~i~G~pGSGKsT~a-~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQC-ANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHH-HHHHH
T ss_pred             CCcEEEEECCCCCCHHHHH-HHHHH
Confidence            3468999999999999999 66653

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.00072  Score=55.45  Aligned_cols=20  Identities=30%  Similarity=0.426  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.|.||.|+||||++ ++++.
T Consensus        38 lLl~Gp~G~GKttl~-~~la~   57 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTI-VALAR   57 (227)
T ss_dssp             EEEECSSSSSHHHHH-HHHHH
T ss_pred             EEEECCCCCChhHHH-HHHHH
Confidence            679999999999999 77765

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00025  Score=57.13  Aligned_cols=19  Identities=42%  Similarity=0.606  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 023563           81 HVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~  100 (280)
                      +.|+||+|||||||+ +.|.
T Consensus         4 Ivl~GpsG~GK~tl~-~~L~   22 (186)
T d1gkya_           4 IVISGPSGTGKSTLL-KKLF   22 (186)
T ss_dssp             EEEECCTTSSHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHH-HHHH
Confidence            679999999999999 6553

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.82  E-value=0.00093  Score=49.68  Aligned_cols=41  Identities=22%  Similarity=0.150  Sum_probs=27.0

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHh-cchhCCeeEEEecCC
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQ-AETQKGRNVAVIKSN  115 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~-gl~~~g~~i~~~~~~  115 (280)
                      +++|+.+.|.+|.|||||+.++..+. -....+..+.++.+.
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~   45 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPT   45 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeecc
Confidence            46899999999999999966623332 223345555555543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0003  Score=57.44  Aligned_cols=20  Identities=20%  Similarity=0.310  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~  100 (280)
                      ++||-||+||||||+. +.|.
T Consensus         4 iIgI~G~~gSGKSTla-~~L~   23 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVC-AKIV   23 (213)
T ss_dssp             EEEEECSTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHH
Confidence            6899999999999999 6554

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.79  E-value=0.00019  Score=57.70  Aligned_cols=22  Identities=14%  Similarity=0.213  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.|+|||||+ +.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLi-n~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFI-NSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHH-HHHHTC
T ss_pred             EEEEECCCCCCHHHHH-HHhcCC
Confidence            4999999999999999 888874

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.78  E-value=0.0026  Score=47.86  Aligned_cols=37  Identities=22%  Similarity=0.281  Sum_probs=25.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK  116 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~  116 (280)
                      ..+...|.+|-|||||+.+...+   ...|..+.++.+..
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~---~~~~~~vli~~P~~   43 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY---AAQGYKVLVLNPSV   43 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH---HTTTCCEEEEESCH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH---HHcCCcEEEEcChH
Confidence            34667789999999999883322   34566677666643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.001  Score=58.82  Aligned_cols=40  Identities=20%  Similarity=0.226  Sum_probs=27.6

Q ss_pred             EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHH
Q 023563           53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l   99 (280)
                      |+++|. ++|.+..     .+.+..+.+.+|+|||||||||++ ..|
T Consensus         6 l~l~NF-ks~~~~~-----~i~f~~~~l~~i~G~NGsGKS~il-eAi   45 (427)
T d1w1wa_           6 LELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMM-DAI   45 (427)
T ss_dssp             EEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHH-HHH
T ss_pred             EEEeCe-eeeCCCE-----EEeCCCCCEEEEECCCCCCHHHHH-HHH
Confidence            556663 3554432     244565669999999999999999 444

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.76  E-value=0.00015  Score=61.31  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +|...+|+|+||+|||||+ +.|.|-
T Consensus        96 ~~~~~vl~G~SGVGKSSLi-N~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLL-NAISPE  120 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHH-HHHCC-
T ss_pred             ccceEEEECCCCccHHHHH-HhhccH
Confidence            5788999999999999999 888773

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.76  E-value=0.00038  Score=55.75  Aligned_cols=24  Identities=38%  Similarity=0.564  Sum_probs=20.9

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      |+|-.+.|+||.||||||.. +.|+
T Consensus         1 p~~~riil~G~pGSGKsT~a-~~La   24 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQA-PKLA   24 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHH-HHHH
T ss_pred             CCccEEEEECCCCCCHHHHH-HHHH
Confidence            56777889999999999999 7776

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00038  Score=56.01  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +-.++.|+||.||||||+. +.|+.
T Consensus         7 ~~~iI~i~GppGSGKsT~a-~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQC-EKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCcEEEEECCCCCCHHHHH-HHHHH
Confidence            4468999999999999999 77754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.00033  Score=56.70  Aligned_cols=19  Identities=42%  Similarity=0.620  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 023563           81 HVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~  100 (280)
                      ++|+||+||||||++ +.|.
T Consensus         3 Ivl~GPsGsGK~tl~-~~L~   21 (190)
T d1lvga_           3 VVLSGPSGAGKSTLL-KKLF   21 (190)
T ss_dssp             EEEECCTTSSHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHH-HHHH
Confidence            679999999999999 6554

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00037  Score=56.02  Aligned_cols=21  Identities=14%  Similarity=0.229  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~  100 (280)
                      ..+.|+||+|+|||||+ +.|.
T Consensus         4 k~ivl~Gpsg~GK~tl~-~~L~   24 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIK-NTLI   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHH-HHHH
T ss_pred             CcEEEECCCCCCHHHHH-HHHH
Confidence            47899999999999999 5444

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00044  Score=61.16  Aligned_cols=40  Identities=28%  Similarity=0.120  Sum_probs=29.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK  116 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~  116 (280)
                      +.-++||.||.|||||||+.+++..+...|.+++.+.-++
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDp   92 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   92 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCC
Confidence            4568999999999999999444444455677777665443

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.71  E-value=0.00032  Score=56.54  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=22.1

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +..+.++.|+||.||||||+. +.|+-
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a-~~La~   30 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQC-EKIVQ   30 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHH-HHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence            457789999999999999999 76654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.71  E-value=0.00051  Score=56.70  Aligned_cols=27  Identities=19%  Similarity=0.117  Sum_probs=23.5

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|+++.|.||.|||||||.+..+..
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            899999999999999999999555543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00041  Score=56.71  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=23.0

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      +++|+++.|.||.|||||||++.++.
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            89999999999999999999955443

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.69  E-value=0.00064  Score=55.41  Aligned_cols=28  Identities=18%  Similarity=0.137  Sum_probs=24.7

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +++|+++.|.|++|+|||||++.++...
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999996666554

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00069  Score=55.58  Aligned_cols=44  Identities=9%  Similarity=0.080  Sum_probs=27.2

Q ss_pred             ccCCCEEEEeCcc-cHHHHHHHHHHHHhh--cCCEEEEEEechhHhh
Q 023563          153 YDQVDVIGIDEAQ-FFEDLYDFCREAADH--DGKTVIVAGLDGDYLR  196 (280)
Q Consensus       153 ~~~p~lLlLDEP~-~~~~i~~~l~~l~~~--~g~tviivtHdl~~~~  196 (280)
                      -.+.+++++||.. ...+-...|.+..++  .+..+|++|++.+-+.
T Consensus       106 ~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll  152 (207)
T d1a5ta2         106 LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLL  152 (207)
T ss_dssp             TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSC
T ss_pred             cCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhh
Confidence            3578899999992 222233344444443  2566788999987543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.66  E-value=0.00048  Score=54.06  Aligned_cols=30  Identities=27%  Similarity=0.404  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeE
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNV  109 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i  109 (280)
                      .++.|.|++||||||++ +.|+.. ...|..+
T Consensus         2 kiivi~G~~GsGKTT~~-~~La~~L~~~~~~~   32 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVL-AKVKEILDNQGINN   32 (194)
T ss_dssp             EEEEEEECTTSCHHHHH-HHHHHHHHTTTCCE
T ss_pred             eEEEEECCCCCCHHHHH-HHHHHHHHHcCCCE
Confidence            36789999999999999 777653 2334444

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.65  E-value=0.00043  Score=54.34  Aligned_cols=20  Identities=35%  Similarity=0.433  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.|+|++||||||+. +.|+.
T Consensus         3 I~liG~~GsGKsTi~-k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLA-RALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHH
Confidence            678899999999999 77754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.65  E-value=0.00043  Score=54.57  Aligned_cols=21  Identities=29%  Similarity=0.233  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|+|++||||||+. +.++-
T Consensus         4 ~Iil~G~~GsGKSTia-~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVG-RELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHH-HHHHH
T ss_pred             CEEEECCCCCCHHHHH-HHHHH
Confidence            3568999999999999 77753

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.00049  Score=54.89  Aligned_cols=23  Identities=39%  Similarity=0.426  Sum_probs=19.7

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHH
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l   99 (280)
                      ++-+++.++|++||||||+. +.+
T Consensus        12 ~~p~liil~G~pGsGKST~a-~~l   34 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFI-QEH   34 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHH-HHH
T ss_pred             CCCEEEEEECCCCCCHHHHH-HHH
Confidence            45579999999999999999 555

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.60  E-value=0.00048  Score=54.04  Aligned_cols=20  Identities=40%  Similarity=0.451  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.|+|++||||||+. +.++.
T Consensus         4 IvliG~~G~GKSTig-~~La~   23 (165)
T d2iyva1           4 AVLVGLPGSGKSTIG-RRLAK   23 (165)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHH
Confidence            568899999999999 77754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.58  E-value=0.00042  Score=55.49  Aligned_cols=21  Identities=29%  Similarity=0.284  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|+||.||||||+. +.|+-
T Consensus         5 ~I~i~GppGsGKsT~a-~~La~   25 (189)
T d1zaka1           5 KVMISGAPASGKGTQC-ELIKT   25 (189)
T ss_dssp             CEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            4679999999999999 76653

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00059  Score=54.58  Aligned_cols=21  Identities=33%  Similarity=0.354  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++.|+||.||||||.. +.|+-
T Consensus         3 iI~i~GppGSGKsT~a-~~La~   23 (194)
T d1teva_           3 VVFVLGGPGAGKGTQC-ARIVE   23 (194)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            6899999999999999 76654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.50  E-value=0.00092  Score=58.89  Aligned_cols=42  Identities=26%  Similarity=0.155  Sum_probs=31.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDT  118 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~  118 (280)
                      +.-++||.||-|||||||+.+++..+...|.+++.+.-++..
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss   91 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS   91 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccccc
Confidence            346899999999999999955444456678888877655443

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.48  E-value=0.00069  Score=53.34  Aligned_cols=20  Identities=40%  Similarity=0.385  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.|+||.||||||+. +.|+-
T Consensus         3 I~i~G~pGSGKsT~a-~~La~   22 (182)
T d1zina1           3 LVLMGLPGAGKGTQA-EKIVA   22 (182)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHH
Confidence            679999999999999 76654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.47  E-value=0.00052  Score=53.58  Aligned_cols=21  Identities=38%  Similarity=0.370  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|||||||+ +.+.+
T Consensus        15 kI~lvG~~~vGKTsLl-~~l~~   35 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLL-HMLKD   35 (186)
T ss_dssp             EEEEEEETTSSHHHHH-HHHSC
T ss_pred             EEEEECCCCCCHHHHH-HHHhC
Confidence            5789999999999999 66655

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00084  Score=55.15  Aligned_cols=26  Identities=23%  Similarity=0.061  Sum_probs=23.0

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      |++|+++.|.||+|||||||.+..+.
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999999955443

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.46  E-value=0.00059  Score=56.93  Aligned_cols=25  Identities=28%  Similarity=0.206  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ....+.|.||.|||||||. +.|++.
T Consensus        31 ~P~~ilL~GpPGtGKT~la-~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLR-SAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHH-HHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHH-HHHHHH
Confidence            3456889999999999999 888773

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.44  E-value=0.00071  Score=54.07  Aligned_cols=21  Identities=29%  Similarity=0.287  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~  100 (280)
                      =++||.|+.||||||+. +.+.
T Consensus         4 ~IIgitG~~gSGKstva-~~l~   24 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVA-ALLR   24 (191)
T ss_dssp             EEEEEEECTTSCHHHHH-HHHH
T ss_pred             EEEEEECCCCCCHHHHH-HHHH
Confidence            37899999999999999 7764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00069  Score=51.47  Aligned_cols=21  Identities=33%  Similarity=0.344  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|++|+|||||+ +.+.+
T Consensus         2 KI~liG~~nvGKSSLl-n~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLL-HMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhC
Confidence            4679999999999999 55554

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00079  Score=54.44  Aligned_cols=21  Identities=33%  Similarity=0.395  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|.||.||||||.. +.|+.
T Consensus         5 iI~I~GppGSGKgT~a-k~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLC-KAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            8999999999999999 76654

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.0035  Score=56.47  Aligned_cols=22  Identities=14%  Similarity=0.235  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      -++|+|..|+|||||+ +.|.|.
T Consensus        58 ~Iai~G~~n~GKSSLi-NaL~G~   79 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFI-NTLRGI   79 (400)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHTC
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            3899999999999999 989885

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0038  Score=54.44  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ..++.++||+|+|||.|. +.|+..
T Consensus        52 ~~~~lf~Gp~GvGKT~la-k~la~~   75 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVT-VQLSKA   75 (315)
T ss_dssp             SEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             ceEEEEECCCcchhHHHH-HHHHhh
Confidence            346889999999999999 888764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.40  E-value=0.00057  Score=54.25  Aligned_cols=20  Identities=30%  Similarity=0.290  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +||+|+.++|||||+ +.|.|
T Consensus         4 VaiiG~~nvGKSSLi-n~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLL-SVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHH-HHSEE
T ss_pred             EEEECCCCCCHHHHH-HHHhC
Confidence            799999999999999 88876

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.40  E-value=0.00069  Score=53.34  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      -++|+|+.|+|||||+ +.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLi-n~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLI-YRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHH-HHHHSC
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            4789999999999999 888773

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0024  Score=53.01  Aligned_cols=43  Identities=16%  Similarity=0.203  Sum_probs=26.1

Q ss_pred             cCCCEEEEeCccc-HHHHHHHHHHHHhh--cCCEEEEEEechhHhh
Q 023563          154 DQVDVIGIDEAQF-FEDLYDFCREAADH--DGKTVIVAGLDGDYLR  196 (280)
Q Consensus       154 ~~p~lLlLDEP~~-~~~i~~~l~~l~~~--~g~tviivtHdl~~~~  196 (280)
                      .+.+++++||... ..+..+.|.+..++  .+..+|++|++.+-+.
T Consensus       114 ~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~  159 (239)
T d1njfa_         114 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP  159 (239)
T ss_dssp             SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred             CCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccC
Confidence            3567999999922 12222333343333  2567999999887554

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.37  E-value=0.00077  Score=51.37  Aligned_cols=20  Identities=40%  Similarity=0.486  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.|+|+.|+|||||+ +.+.+
T Consensus         3 ivlvG~~~vGKSsLi-~~l~~   22 (160)
T d1r8sa_           3 ILMVGLDAAGKTTIL-YKLKL   22 (160)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHhc
Confidence            679999999999999 65544

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.35  E-value=0.0009  Score=53.09  Aligned_cols=21  Identities=38%  Similarity=0.300  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|+||.||||||+. +.|+-
T Consensus         2 ~I~i~G~pGSGKsT~a-~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQA-DRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            4679999999999999 76654

>d1xx6a2 g.39.1.14 (A:143-191) Thymidine kinase, TK1, C-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Type II thymidine kinase zinc finger
domain: Thymidine kinase, TK1, C-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.35  E-value=0.00066  Score=43.18  Aligned_cols=40  Identities=33%  Similarity=0.492  Sum_probs=26.7

Q ss_pred             eccccCcceeeeeecCC------CcEEEeCCccceeeeccchhccC
Q 023563          219 CEFCGKRAFFTLRKTEE------TKTELIGGSDIYMPVCRQHYVSG  258 (280)
Q Consensus       219 i~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  258 (280)
                      |..||..+.+..|..++      ..+.++|+.+.|.++||+||...
T Consensus         3 C~~CG~~A~~t~R~~~~~~~~~~~~~v~IGg~e~Y~~~CR~~~~~p   48 (49)
T d1xx6a2           3 CVVCGNPATRTQRLINGKPAFYDDPVVLIGAMESYEARCRKCHVVP   48 (49)
T ss_dssp             CTTTSSEECEEEEEETTEECCTTCCCC-----EEEEEECTTTCCCC
T ss_pred             CCcCCCcceeEEEEcCCCCcccCCCeEEECCCccEEeechhcccCC
Confidence            44578888888887553      45677899999999999999653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.30  E-value=0.00088  Score=51.32  Aligned_cols=21  Identities=48%  Similarity=0.449  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|..|+|||||+ +.+.+
T Consensus         7 kI~ivG~~~vGKSSLi-~~~~~   27 (169)
T d1upta_           7 RILILGLDGAGKTTIL-YRLQV   27 (169)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhC
Confidence            3789999999999999 65554

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.27  E-value=0.0011  Score=52.27  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +++|+|..|+|||||+ +.+.|-
T Consensus         7 ~I~lvG~~~~GKSSLi-n~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLL-NNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHTS
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            7999999999999999 777764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.26  E-value=0.0013  Score=52.12  Aligned_cols=26  Identities=27%  Similarity=0.276  Sum_probs=22.5

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~  100 (280)
                      ..++|.++.|-|+-|||||||. +.+.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfv-r~~~   54 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLT-RGML   54 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHH-HHHH
T ss_pred             cCCCCeEEEEecCCCccHHHHH-HHHH
Confidence            4578999999999999999999 6554

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.26  E-value=0.0011  Score=53.99  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|-||.||||||.. +.|+-
T Consensus         5 ~IaIdGp~GsGKgT~a-k~La~   25 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVA-KIIAK   25 (223)
T ss_dssp             EEEEECSSCSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            5778899999999999 77764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.26  E-value=0.012  Score=45.92  Aligned_cols=22  Identities=32%  Similarity=0.323  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+||+|+.|+|||||+ +.|.|-
T Consensus        10 kV~iiG~~~~GKSTLi-n~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLF-NAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHTS
T ss_pred             EEEEECCCCCCHHHHH-HHHHCC
Confidence            4799999999999999 777763

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.25  E-value=0.0012  Score=54.22  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=21.8

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+|-++.|.|.+||||||+. +.|.-
T Consensus        22 ~kg~vIwltGlsGsGKTTia-~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLA-VELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            67889999999999999999 66653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0013  Score=57.65  Aligned_cols=34  Identities=38%  Similarity=0.475  Sum_probs=24.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEecC
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVIKS  114 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~~~  114 (280)
                      ++||.|++||||||+. +.|..+.   ..+..+..+..
T Consensus        82 iIGIaG~sgSGKSTla-~~L~~lL~~~~~~~~v~~Is~  118 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTA-RVLQALLSRWPEHRRVELITT  118 (308)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHHHHTTSTTCCCEEEEEG
T ss_pred             EEEEeCCCCCCCcHHH-HHHHHHHhhhcCCCceEEEee
Confidence            8999999999999999 7776542   23445554443

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0011  Score=51.77  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +++|+|..|+|||||+ +.|.|
T Consensus         7 ~I~iiG~~nvGKSSLi-n~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLL-NKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHH-HHHHT
T ss_pred             EEEEECCCCCCHHHHH-HHHhC
Confidence            5899999999999999 88876

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0011  Score=52.28  Aligned_cols=21  Identities=29%  Similarity=0.341  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|+||.||||||.. +.|+-
T Consensus         2 ~I~i~G~pGSGKsT~~-~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQA-QFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            4679999999999999 76653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.22  E-value=0.0012  Score=52.22  Aligned_cols=21  Identities=29%  Similarity=0.387  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|+||.||||||+. +.|+.
T Consensus         2 ~I~i~G~pGsGKsT~a-~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQA-VKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            3679999999999999 66653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.20  E-value=0.0011  Score=53.09  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|||||||+ +.|.+
T Consensus         5 ~V~lvG~~n~GKTSLl-n~l~~   25 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLL-TLLTT   25 (209)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhC
Confidence            6899999999999999 76765

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.18  E-value=0.003  Score=50.78  Aligned_cols=32  Identities=19%  Similarity=0.080  Sum_probs=25.3

Q ss_pred             eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHH
Q 023563           67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l   99 (280)
                      .++...+.+ .|.=+.|.||+|+|||||.+.++
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            466666667 67888999999999999994444

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0013  Score=53.32  Aligned_cols=24  Identities=33%  Similarity=0.232  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +|.+++|-|+-||||||++ +.|..
T Consensus         1 rgkfIviEG~dGsGKsT~~-~~L~~   24 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTAR-NVVVE   24 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHH-HHHHH
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHHH
Confidence            5889999999999999999 76654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0013  Score=53.93  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=27.3

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEe
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVI  112 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~  112 (280)
                      ++|-+++|-|+-||||||++ +.|.. +...|.++..+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~-~~L~~~L~~~g~~v~~~   37 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQS-RKLVEALCAAGHRAELL   37 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHH-HHHHHHHHHCCCcEEEE
Confidence            47899999999999999999 66655 34456555443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.15  E-value=0.0035  Score=51.04  Aligned_cols=114  Identities=11%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcchh----CCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHh-hh
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAETQ----KGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFG-SD  151 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~----~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a-~a  151 (280)
                      .+.-+.|.||+|+||||+. +.+..+..    ...++..+.+.              +.   ......+.++.+... ..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a-~~l~~~i~~~~~~h~D~~~i~~~--------------~~---~I~Id~IR~i~~~~~~~~   75 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVS-LELPEYVEKFPPKASDVLEIDPE--------------GE---NIGIDDIRTIKDFLNYSP   75 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHH-HHHHHHHHTSCCCTTTEEEECCS--------------SS---CBCHHHHHHHHHHHTSCC
T ss_pred             CCceEEEECCCCCCHHHHH-HHHHHHHhccccCCCCEEEEeCC--------------cC---CCCHHHHHHHHHHHhhCc
Confidence            4567889999999999999 66665321    00112221111              10   011111222222211 12


Q ss_pred             hccCCCEEEEeCcc-cHHHHHHHHHHHHhh--cCCEEEEEEechhHhhhccCCccccccccceEEE
Q 023563          152 AYDQVDVIGIDEAQ-FFEDLYDFCREAADH--DGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTK  214 (280)
Q Consensus       152 L~~~p~lLlLDEP~-~~~~i~~~l~~l~~~--~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~  214 (280)
                      ...+.+++++||.. ...+-.+.|.+..++  .+..+|++|++.+-+..      .|..-|-.+.+
T Consensus        76 ~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~------TI~SRC~~i~~  135 (198)
T d2gnoa2          76 ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLP------TIKSRVFRVVV  135 (198)
T ss_dssp             SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCH------HHHTTSEEEEC
T ss_pred             ccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHH------HHhcceEEEeC
Confidence            34577899999992 112222333333343  26778999999886543      34444544433

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0017  Score=49.91  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      |=.++|+|+.|+|||||+ +.|.|.
T Consensus         1 ~~kI~lvG~~nvGKSsLi-n~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLL-NALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHH-HHHHTS
T ss_pred             CCEEEEECCCCCCHHHHH-HHHhCC
Confidence            335789999999999999 888764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.09  E-value=0.00099  Score=52.61  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhcc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +||+|..|+|||||+ +.|.|.
T Consensus         4 VaivG~~nvGKSTLi-n~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLL-AAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHH-HHHCSS
T ss_pred             EEEECCCCCCHHHHH-HHHhCC
Confidence            799999999999999 888774

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.09  E-value=0.0014  Score=50.73  Aligned_cols=22  Identities=36%  Similarity=0.483  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.|||||||+ +.+.+-
T Consensus         4 ki~ivG~~~~GKTsLi-~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTIL-KKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHH-HHHTTC
T ss_pred             EEEEECCCCCCHHHHH-HHHcCC
Confidence            3779999999999999 777663

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0036  Score=55.72  Aligned_cols=39  Identities=26%  Similarity=0.267  Sum_probs=26.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcc----hhCCeeEEEecCC
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAE----TQKGRNVAVIKSN  115 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl----~~~g~~i~~~~~~  115 (280)
                      .+.++.|.||-|+||||++..++..+    ...+.+|....+.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApT  204 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPT  204 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSS
T ss_pred             cCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCc
Confidence            36799999999999999983433333    2245566655554

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.07  E-value=0.0014  Score=52.36  Aligned_cols=24  Identities=29%  Similarity=0.282  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.-+++|-|+.||||||++ +.|..
T Consensus         8 kp~~I~ieG~~GsGKTTl~-~~L~~   31 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYL-NHFEK   31 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHH-HTTGG
T ss_pred             CceEEEEECCCCCCHHHHH-HHHHH
Confidence            3458999999999999999 87765

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.0017  Score=51.43  Aligned_cols=21  Identities=38%  Similarity=0.469  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|+||.||||||+. +.|+-
T Consensus         4 rIvl~G~pGSGKtT~a-~~La~   24 (180)
T d1akya1           4 RMVLIGPPGAGKGTQA-PNLQE   24 (180)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            3668999999999999 76754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.01  E-value=0.0016  Score=52.90  Aligned_cols=21  Identities=29%  Similarity=0.267  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++||.|+.||||||.. +.+..
T Consensus         4 iIgITG~igSGKStv~-~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIA-NLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHH-HHHHT
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            7899999999999999 87753

>d2b8ta2 g.39.1.14 (A:150-216) Thymidine kinase, TK1, C-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Type II thymidine kinase zinc finger
domain: Thymidine kinase, TK1, C-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=96.00  E-value=0.0015  Score=44.15  Aligned_cols=40  Identities=35%  Similarity=0.648  Sum_probs=31.2

Q ss_pred             eeccccCcceeeeeecC------CCcEEEeCCccceeeeccchhcc
Q 023563          218 RCEFCGKRAFFTLRKTE------ETKTELIGGSDIYMPVCRQHYVS  257 (280)
Q Consensus       218 ~i~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  257 (280)
                      .|..||.++.+..|..+      +..+.++|+.+.|.++||+||..
T Consensus         3 IC~~CG~~A~~t~R~~~~~~~~~~g~~i~IGg~e~Y~a~CR~cy~~   48 (67)
T d2b8ta2           3 ICNECGAEATHSLRKIDGKHADYNDDIVKIGCQEFYSAVCRHHHKV   48 (67)
T ss_dssp             ECTTTCSEECEEEEEETTEECCTTSCSCCCCSTTTEEEECGGGCCC
T ss_pred             CcccCCCcceeEEEEeCCCCcccCCCEEEeCCCccEeehhhhhccC
Confidence            35568888888888654      23456789999999999999974

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.00  E-value=0.0016  Score=53.51  Aligned_cols=21  Identities=29%  Similarity=0.301  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|.||+|+||||++ ++++.
T Consensus        47 ~lll~Gp~G~GKTtla-~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAA-LALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHH-HHHHH
T ss_pred             eEEEECCCCCcHHHHH-HHHHH
Confidence            3679999999999999 87765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.016  Score=45.12  Aligned_cols=20  Identities=25%  Similarity=0.298  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.|+|..|+|||||+ +.+.+
T Consensus         6 v~lvG~~~vGKTsLi-~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLA-NIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHH-HHHHC
T ss_pred             EEEECCCCcCHHHHH-HHHHh
Confidence            679999999999999 66655

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.97  E-value=0.0018  Score=52.03  Aligned_cols=21  Identities=33%  Similarity=0.320  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|+||.||||||+. +.|+-
T Consensus         8 rIiliG~PGSGKtT~a-~~La~   28 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVS-SRITK   28 (189)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             eEEEECCCCCCHHHHH-HHHHH
Confidence            5779999999999999 66654

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=95.89  E-value=0.0014  Score=55.65  Aligned_cols=41  Identities=12%  Similarity=0.126  Sum_probs=27.8

Q ss_pred             eeCceEEEEEcCCCCcHHHHH-HHHHhcchhCCeeEEEecCC
Q 023563           75 SPSGEIHVIVGPMFAGKTTTL-LRRIQAETQKGRNVAVIKSN  115 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl-~~~l~gl~~~g~~i~~~~~~  115 (280)
                      +.+|+.+.|.+|.|||||+.+ ..++......+..+.++.|.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Pt   47 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPT   47 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESS
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEccH
Confidence            568999999999999999733 24443333345566666554

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.002  Score=53.31  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ..+.|.||+|+||||++ ++++.
T Consensus        53 ~~lll~GPpG~GKTt~a-~~la~   74 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAA-HLVAQ   74 (253)
T ss_dssp             SEEEEECSTTSSHHHHH-HHHHH
T ss_pred             ceEEEECCCCCCHHHHH-HHHHH
Confidence            35789999999999999 88876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0015  Score=53.52  Aligned_cols=25  Identities=24%  Similarity=0.191  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ++.+++|-|+-||||||++ +.|...
T Consensus         1 ~~k~I~ieG~dGsGKST~~-~~L~~~   25 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFV-NILKQL   25 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHH-TTTGGG
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHHHH
Confidence            4678999999999999999 877653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.84  E-value=0.0021  Score=50.02  Aligned_cols=21  Identities=43%  Similarity=0.404  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|..|||||||+ +.+.+
T Consensus        17 kI~vvG~~~~GKSsLi-~rl~~   37 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTIL-YQFSM   37 (177)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHT
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            5789999999999999 66665

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.0012  Score=51.52  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|+.++|||||+ +.|.+.
T Consensus        18 ~I~lvG~~NvGKSSL~-n~L~~~   39 (188)
T d1puia_          18 EVAFAGRSNAGKSSAL-NTLTNQ   39 (188)
T ss_dssp             EEEEEECTTSSHHHHH-TTTCCC
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            4899999999999999 888764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.75  E-value=0.0079  Score=52.69  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=24.9

Q ss_pred             eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ..-+-...++| ++.++||.|+|||.+. +.+++.
T Consensus       114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la-~ala~~  146 (321)
T d1w44a_         114 AEFGGHRYASG-MVIVTGKGNSGKTPLV-HALGEA  146 (321)
T ss_dssp             EEETTEEEESE-EEEEECSSSSCHHHHH-HHHHHH
T ss_pred             HHHhhcccCCc-eEEEECCCCccHHHHH-HHHHHH
Confidence            33344566666 5667899999999999 888874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.74  E-value=0.0022  Score=49.69  Aligned_cols=21  Identities=33%  Similarity=0.456  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         4 ki~i~G~~~~GKTsLl-~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFV-NVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            3679999999999999 55543

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.0026  Score=52.14  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +|.+++|=|+-||||||++ +.|.-
T Consensus         2 kGk~I~iEG~DGsGKST~~-~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQC-NILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHH-HHHHH
T ss_pred             CeEEEEEECCCCCcHHHHH-HHHHH
Confidence            6899999999999999999 77764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0026  Score=51.83  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++||.|+.||||||.. +.+..
T Consensus         5 iIgitG~igSGKStv~-~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVA-NAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHH
T ss_pred             EEEEECCCcCCHHHHH-HHHHH
Confidence            7899999999999999 87753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.73  E-value=0.0026  Score=52.44  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=18.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHH
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l   99 (280)
                      .+.++.|.||.|+|||||+ +.+
T Consensus        28 ~~~~i~i~G~~G~GKTsLl-~~~   49 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSII-KIG   49 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHH-HHH
T ss_pred             cCCEEEEEcCCCCcHHHHH-HHH
Confidence            4568899999999999999 544

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.72  E-value=0.0023  Score=52.57  Aligned_cols=21  Identities=33%  Similarity=0.339  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|.||.|+||||++ ++++.
T Consensus        37 ~~L~~GPpGtGKT~lA-~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLA-HIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHH-HHHHH
T ss_pred             eEEEECCCCCcHHHHH-HHHHh
Confidence            3679999999999999 88765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.011  Score=45.65  Aligned_cols=21  Identities=33%  Similarity=0.384  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|+.|+|||||+.+.+.+
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999444433

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.0025  Score=52.01  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.|.||+|+||||++ +.++.
T Consensus        36 lll~Gp~G~GKTtl~-~~i~~   55 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTI-LALTK   55 (237)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCChHHHH-HHHHH
Confidence            679999999999999 77765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.0025  Score=51.31  Aligned_cols=21  Identities=29%  Similarity=0.312  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      -++|+|+.|+|||||+ +.+.+
T Consensus         2 ~V~ivG~~~~GKTsLl-~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLF-VRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4789999999999999 55544

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.023  Score=48.34  Aligned_cols=108  Identities=15%  Similarity=0.044  Sum_probs=52.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeec-cccc-ccccccCchHHHHHHhhhhccCC-
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHD-GVKL-PCCALTTLSSFRQKFGSDAYDQV-  156 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~-~~~~-~~~~~~~l~~~~~~~a~aL~~~p-  156 (280)
                      -+.|+||.|.|||+++ ..++.....+.-    ++...   . ..++.-+ ..+. .....-+.+......-..+...+ 
T Consensus        41 n~lLVG~~GvGKTalv-~~la~ri~~~~v----p~~l~---~-~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~~~~  111 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIA-EGLAWRIVQGDV----PEVMA---D-CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTN  111 (268)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHHHHHTCS----CGGGT---T-CEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSC
T ss_pred             CcEEECCCCCcHHHHH-HHHHHHHHhCCc----ccccc---c-ceeEEeeechHhccCccchhHHHHHHHHHHHhhccCC
Confidence            4569999999999999 655543222210    11000   0 0111110 0011 11111222332332333344444 


Q ss_pred             CEEEEeCcc----------cHHHHHHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563          157 DVIGIDEAQ----------FFEDLYDFCREAADHDGKTVIVAGLDGDYLRR  197 (280)
Q Consensus       157 ~lLlLDEP~----------~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~  197 (280)
                      -+|++||..          ...++.++|+-+..+....+|..|- .++..+
T Consensus       112 iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT-~eey~~  161 (268)
T d1r6bx2         112 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTT-YQEFSN  161 (268)
T ss_dssp             EEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEEC-HHHHHC
T ss_pred             ceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCC-HHHHHH
Confidence            466799981          2357888888666653566666664 444444

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0031  Score=49.48  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|+.|+|||||+.+.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999444444

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.63  E-value=0.0082  Score=48.09  Aligned_cols=33  Identities=24%  Similarity=0.147  Sum_probs=23.7

Q ss_pred             eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHH
Q 023563           66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l   99 (280)
                      ..++..-+.+ .|.=+.|.|++|+||||+.+.++
T Consensus         3 ~~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           3 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             ceEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            3455555544 46778899999999999994433

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.58  E-value=0.014  Score=50.69  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      ..++.++||+|+|||.+. +.|+-..
T Consensus        53 ~~~~lf~Gp~G~GKt~la-k~la~~l   77 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELA-KTLAATL   77 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHH-HHHHHHH
T ss_pred             ceEEEEECCCcchHHHHH-HHHHHHh
Confidence            346789999999999999 8777654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.57  E-value=0.0034  Score=48.63  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|+.|+|||||+.+.+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999444444

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.54  E-value=0.051  Score=42.44  Aligned_cols=54  Identities=26%  Similarity=0.386  Sum_probs=39.7

Q ss_pred             ccCCCEEEEeCcccH--------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563          153 YDQVDVIGIDEAQFF--------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA  217 (280)
Q Consensus       153 ~~~p~lLlLDEP~~~--------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~  217 (280)
                      ..+.++|+|||-...        .+++++|+. +- .+.-+|++.++...-         |++.||.|..|+.
T Consensus        92 ~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~-rp-~~~evVlTGr~~p~~---------L~e~ADlVTEm~~  153 (157)
T d1g5ta_          92 DPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RP-GHQTVIITGRGCHRD---------ILDLADTVSELRP  153 (157)
T ss_dssp             CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SC-TTCEEEEECSSCCHH---------HHHHCSEEEECCC
T ss_pred             cCccCEEeHHHHHHHHHcCCCCHHHHHHHHHh-CC-CCCEEEEECCCCCHH---------HHHhcceeeeeee
Confidence            457999999999433        356666654 22 378999999987643         3579999998876

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0039  Score=48.77  Aligned_cols=21  Identities=29%  Similarity=0.381  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++++|+.|+|||||+.+.+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            679999999999999444444

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.0035  Score=48.88  Aligned_cols=19  Identities=32%  Similarity=0.434  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 023563           81 HVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~  100 (280)
                      ++|+|+.|+|||||+ +.+.
T Consensus         5 i~~vG~~~vGKSsLi-~~~~   23 (175)
T d1ky3a_           5 VIILGDSGVGKTSLM-HRYV   23 (175)
T ss_dssp             EEEECCTTSSHHHHH-HHHH
T ss_pred             EEEECCCCcCHHHHH-HHHH
Confidence            789999999999999 5444

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.41  E-value=0.0018  Score=56.05  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCC
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSN  115 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~  115 (280)
                      ++||.|++||||||+. +.+..+ ...+.+...+.++
T Consensus         6 IIgIaG~SGSGKTTva-~~l~~i~~~~~v~~~iI~~D   41 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVK-HTFDQIFRREGVKAVSIEGD   41 (288)
T ss_dssp             EEEEESCC---CCTHH-HHHHHHHHHHTCCEEEEEGG
T ss_pred             EEEEECCCCCcHHHHH-HHHHHHHhhcCCCeEEEeCC
Confidence            8999999999999999 666543 2334455555544

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.40  E-value=0.0034  Score=51.62  Aligned_cols=21  Identities=38%  Similarity=0.409  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhcc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +.|.||.|+||||++ +++++.
T Consensus        38 ~Ll~GPpG~GKTtla-~~la~~   58 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLA-HVIAHE   58 (239)
T ss_dssp             EEEECCTTSCHHHHH-HHHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHHH
Confidence            569999999999999 888763

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0042  Score=48.40  Aligned_cols=22  Identities=32%  Similarity=0.307  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|..|+|||||+.+.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999444544

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.37  E-value=0.0037  Score=48.73  Aligned_cols=19  Identities=37%  Similarity=0.431  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 023563           81 HVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~  100 (280)
                      ++++|+.|+|||||+ +.+.
T Consensus         8 i~vvG~~~vGKTsLi-~~l~   26 (169)
T d3raba_           8 ILIIGNSSVGKTSFL-FRYA   26 (169)
T ss_dssp             EEEECSTTSSHHHHH-HHHH
T ss_pred             EEEECCCCcCHHHHH-HHHH
Confidence            789999999999999 5443

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0052  Score=47.95  Aligned_cols=21  Identities=19%  Similarity=0.319  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|+.|+|||||+.+.+.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999444444

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.36  E-value=0.0037  Score=48.65  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++++|+.|+|||||+ +.+.+
T Consensus        18 kI~vvG~~~vGKSsLi-~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLL-KQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHH-HHHCC
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            4789999999999999 66654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.32  E-value=0.0011  Score=50.87  Aligned_cols=22  Identities=45%  Similarity=0.511  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|..|+|||||+ +.|.|-
T Consensus         2 kI~liG~~n~GKSSLi-n~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLL-NRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHH-HHHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            3789999999999999 778763

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.30  E-value=0.0039  Score=52.60  Aligned_cols=22  Identities=27%  Similarity=0.372  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++|+|..|+|||||+ +.|.|-
T Consensus        34 ~I~LvG~tg~GKSSli-N~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTV-NSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHTS
T ss_pred             EEEEECCCCCcHHHHH-HHHhCC
Confidence            4889999999999999 888874

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0048  Score=47.92  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|..|+|||||+.+.+.+
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999444443

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.29  E-value=0.0035  Score=54.36  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .-+.|+||.|+|||+|. +.++..
T Consensus        50 ~~iLl~GPpG~GKT~lA-kalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIA-RRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHH-HHHHHH
T ss_pred             ceEEEECCCCCCHHHHH-HHHhhc
Confidence            45569999999999999 888874

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0049  Score=47.71  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|..|+|||||+.+.+.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999554444

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0047  Score=47.81  Aligned_cols=22  Identities=18%  Similarity=0.264  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+.+.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999443444

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.25  E-value=0.0048  Score=47.71  Aligned_cols=19  Identities=26%  Similarity=0.363  Sum_probs=16.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 023563           81 HVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~  100 (280)
                      ++++|..|+|||||+ +.+.
T Consensus         5 i~vvG~~~vGKTSli-~~l~   23 (166)
T d1g16a_           5 ILLIGDSGVGKSCLL-VRFV   23 (166)
T ss_dssp             EEEEESTTSSHHHHH-HHHH
T ss_pred             EEEECCCCcCHHHHH-HHHH
Confidence            679999999999999 5443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.17  E-value=0.0052  Score=49.11  Aligned_cols=32  Identities=31%  Similarity=0.388  Sum_probs=24.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEe
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVI  112 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~  112 (280)
                      +++|-|+-||||||++ +.|.. +...|.++.++
T Consensus         2 lI~ieG~dGsGKST~~-~~L~~~l~~~g~~v~~~   34 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLV-EKLSGAFRAAGRSVATL   34 (208)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHH-HHHHHHHHHCCCCEEEE
Confidence            5789999999999999 76664 34456666554

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.17  E-value=0.005  Score=48.64  Aligned_cols=21  Identities=29%  Similarity=0.221  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhcc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ++|+|+.+||||||+ +.|.+.
T Consensus         8 IaiiG~~naGKSTL~-n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLS-KVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHH-HHHHTT
T ss_pred             EEEEeCCCCcHHHHH-HHHHHh
Confidence            899999999999999 878763

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.16  E-value=0.0057  Score=47.10  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|..|+|||||+.+.+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999444444

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.15  E-value=0.0048  Score=50.29  Aligned_cols=20  Identities=30%  Similarity=0.316  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.|.||.|+||||++ ++++.
T Consensus        39 ~ll~Gp~G~GKTt~a-~~la~   58 (224)
T d1sxjb2          39 MIISGMPGIGKTTSV-HCLAH   58 (224)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCCchhhH-HHHHH
Confidence            679999999999999 77654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0057  Score=47.35  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|..|+|||||+.+.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999444443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.0052  Score=53.03  Aligned_cols=19  Identities=32%  Similarity=0.363  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 023563           80 IHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l   99 (280)
                      ++||-|+.|||||||. ..|
T Consensus        29 iIGi~G~qGSGKSTl~-~~l   47 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTS-IQI   47 (286)
T ss_dssp             EEEEECCTTSSHHHHH-HHH
T ss_pred             EEEeECCCCCCHHHHH-HHH
Confidence            8999999999999999 544

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0054  Score=48.33  Aligned_cols=20  Identities=35%  Similarity=0.315  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|+.|+|||||+ +.+.+
T Consensus         8 i~ivG~~~vGKTsLi-~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFL-YRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHH-HHHHC
T ss_pred             EEEECCCCcCHHHHH-HHHhc
Confidence            789999999999999 55554

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.006  Score=47.27  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|..|+|||||+.+.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999444444

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0056  Score=47.91  Aligned_cols=22  Identities=36%  Similarity=0.341  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|..|+|||||+.+.+.+
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4679999999999999444444

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.07  E-value=0.0061  Score=47.30  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|..|+|||||+.+.+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999555555

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.05  E-value=0.0039  Score=49.04  Aligned_cols=21  Identities=48%  Similarity=0.434  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        19 KI~lvG~~~vGKTsLi-~~l~~   39 (182)
T d1moza_          19 RILILGLDGAGKTTIL-YRLQI   39 (182)
T ss_dssp             EEEEEEETTSSHHHHH-HHTCC
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            4679999999999999 66643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.04  E-value=0.0063  Score=47.93  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++++|..|+|||||+.+++.|
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999444433

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.02  E-value=0.0066  Score=47.02  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|..|+|||||+.+.+.+
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999444443

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0065  Score=47.48  Aligned_cols=22  Identities=32%  Similarity=0.312  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|..|+|||||+.+.+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999444544

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0067  Score=47.14  Aligned_cols=21  Identities=24%  Similarity=0.324  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|+.|+|||||+.+.+.+
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999555544

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.0057  Score=52.83  Aligned_cols=31  Identities=32%  Similarity=0.396  Sum_probs=26.1

Q ss_pred             eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      |.=+.|.+|+..+|+|+.|+|||||+ ..|..
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~-~~i~~   65 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLL-QNIAQ   65 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHH-HHHHH
T ss_pred             eecccccCCCeeeEeCCCCCCHHHHH-HHHHH
Confidence            44478999999999999999999999 54543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0069  Score=46.62  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|..|+|||||+.+.+.+
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999444433

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0074  Score=46.86  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++++|..|+|||||+.+++.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3689999999999999554544

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.014  Score=47.34  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      -..|+||.|.|||+++ ..++.
T Consensus        45 n~lLvG~pGVGKTalv-~~LA~   65 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIV-EGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHH
T ss_pred             CeEEEecCCcccHHHH-HHHHH
Confidence            4679999999999999 65554

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0071  Score=46.99  Aligned_cols=21  Identities=19%  Similarity=0.225  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhcc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ++|+|..|+|||||+ +.+.+.
T Consensus         4 i~lvG~~~vGKTsLi-~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALA-RIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHH-HHHHTC
T ss_pred             EEEECCCCcCHHHHH-HHHhCC
Confidence            679999999999999 666653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.83  E-value=0.0077  Score=49.43  Aligned_cols=21  Identities=29%  Similarity=0.289  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~  100 (280)
                      .++||.|+.||||||.. +.|.
T Consensus         2 ~iIgiTG~igSGKsTva-~~l~   22 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTA-DFIM   22 (241)
T ss_dssp             EEEEEECCTTSSHHHHH-HHHH
T ss_pred             EEEEEECCCCCCHHHHH-HHHH
Confidence            37999999999999999 7773

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0078  Score=46.72  Aligned_cols=21  Identities=33%  Similarity=0.355  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|+.|+|||||+.+.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999445555

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0065  Score=47.26  Aligned_cols=19  Identities=37%  Similarity=0.522  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 023563           81 HVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~  100 (280)
                      ++|+|+.|+|||||+ +.+.
T Consensus         8 i~lvG~~~vGKTsLi-~~l~   26 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLV-RRFT   26 (171)
T ss_dssp             EEEEESTTSSHHHHH-HHHH
T ss_pred             EEEECCCCcCHHHHH-HHHH
Confidence            789999999999999 5444

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.80  E-value=0.013  Score=46.46  Aligned_cols=32  Identities=28%  Similarity=0.152  Sum_probs=22.8

Q ss_pred             eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHH
Q 023563           67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l   99 (280)
                      -++..-+. -.|.=+.|.|++|+||||+.+.++
T Consensus         5 ~~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2           5 SLHGVLVD-VYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EEESEEEE-ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHH
Confidence            34443443 457788999999999999984433

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.78  E-value=0.0077  Score=47.49  Aligned_cols=22  Identities=32%  Similarity=0.258  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|..|+|||||+.+.+.|
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4689999999999999556655

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.77  E-value=0.0077  Score=47.99  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|+.|+|||||+.+++.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999444444

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.66  E-value=0.0089  Score=48.96  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      ..+.|.||.|+||||++ +.++..
T Consensus        44 ~~lll~GppGtGKT~l~-~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTL-RKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             CceEEECCCCCCHHHHH-HHHHHH
Confidence            47889999999999999 777654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.63  E-value=0.0061  Score=47.49  Aligned_cols=21  Identities=33%  Similarity=0.399  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|+|+.|+|||||+ +.+.+
T Consensus        14 kIvlvG~~~vGKTSli-~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTIL-YKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHH-HHTTC
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            4679999999999999 55543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.0091  Score=46.94  Aligned_cols=22  Identities=32%  Similarity=0.321  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|..|+|||||+.+.+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999444544

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.009  Score=46.44  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|..|+|||||+.+.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999444433

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.013  Score=48.17  Aligned_cols=34  Identities=35%  Similarity=0.511  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN  115 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~  115 (280)
                      ++.|.|.=|||||||+.+++..  ..+.+++.+..+
T Consensus         5 v~iitGFLGaGKTTll~~lL~~--~~~~riaVI~Ne   38 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENE   38 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEEEec
Confidence            7889999999999999444442  346677776544

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.01  Score=46.92  Aligned_cols=21  Identities=33%  Similarity=0.377  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|..|+|||||+.+.+.+
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999554544

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.48  E-value=0.011  Score=46.03  Aligned_cols=21  Identities=29%  Similarity=0.303  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +.++|..|+|||||+.+.+.+
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999444544

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.01  Score=47.09  Aligned_cols=22  Identities=32%  Similarity=0.321  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++|+|..|+|||||+.+.+.+
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999555555

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.46  E-value=0.0094  Score=49.01  Aligned_cols=22  Identities=36%  Similarity=0.481  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +++|+|..+||||||+ ..|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~-~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLL-DHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHH
T ss_pred             EEEEEeCCCccHHHHH-HHHHhh
Confidence            5999999999999999 777654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.011  Score=46.60  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .++++|..|+|||||+.+.+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999444444

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.011  Score=45.59  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|..|+|||||+.+.+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999555544

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.01  Score=46.33  Aligned_cols=20  Identities=30%  Similarity=0.418  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++++|..|+|||||+ +.+.+
T Consensus        10 i~vvG~~~vGKTsli-~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLL-LRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCcCHHHHH-HHHHh
Confidence            779999999999999 55543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.0079  Score=46.88  Aligned_cols=20  Identities=40%  Similarity=0.403  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++++|+.|+|||||+ +.+.+
T Consensus         6 i~vvG~~~vGKTsli-~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFV-KRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHH-HTTC-
T ss_pred             EEEECCCCcCHHHHH-HHHHh
Confidence            789999999999999 54433

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.18  E-value=0.012  Score=46.43  Aligned_cols=19  Identities=26%  Similarity=0.440  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 023563           80 IHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l   99 (280)
                      .+.|+|..|+|||||+ +.+
T Consensus         4 KivllG~~~vGKTsll-~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFL-KQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHH-HHH
Confidence            4679999999999999 545

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.11  E-value=0.014  Score=45.26  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.|+|..|+|||||+.+.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4779999999999999444444

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.06  E-value=0.012  Score=48.01  Aligned_cols=19  Identities=21%  Similarity=0.272  Sum_probs=16.0

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 023563           80 IHVIVGPMFAGKTTTLLRR   98 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~   98 (280)
                      .+.|+|.+|+|||||+.+.
T Consensus         8 KilllG~~~vGKTsll~~~   26 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQM   26 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4689999999999999443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.04  E-value=0.0081  Score=49.55  Aligned_cols=21  Identities=29%  Similarity=0.167  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++.|.||.|+||||++ +.++.
T Consensus        48 ~l~l~GppGtGKT~l~-~~l~~   68 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLA-KFTVK   68 (287)
T ss_dssp             EEECTTCCSSSHHHHH-HHHHH
T ss_pred             EEEeECCCCCCHHHHH-HHHHH
Confidence            4566799999999999 76654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.88  E-value=0.062  Score=45.70  Aligned_cols=17  Identities=41%  Similarity=0.175  Sum_probs=15.4

Q ss_pred             EEEEEcCCCCcHHHHHH
Q 023563           80 IHVIVGPMFAGKTTTLL   96 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~   96 (280)
                      -++|+|+.|||||||+.
T Consensus         8 ni~i~gh~~~GKTtL~e   24 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTE   24 (276)
T ss_dssp             EEEEEECTTSCHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHH
Confidence            47999999999999993

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.78  E-value=0.022  Score=48.66  Aligned_cols=32  Identities=19%  Similarity=0.188  Sum_probs=26.4

Q ss_pred             eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      |.=+.+-+|+..+|+|+.|+|||||+..++.+
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eeeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            44578999999999999999999998444433

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.69  E-value=0.048  Score=46.19  Aligned_cols=19  Identities=32%  Similarity=0.338  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 023563           80 IHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l   99 (280)
                      -++|+|+.|+|||||+ ..|
T Consensus         4 Nv~iiGh~~~GKTtL~-e~l   22 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLT-EAL   22 (267)
T ss_dssp             EEEEEESTTSSHHHHH-HHH
T ss_pred             EEEEEcCCCCcHHHHH-HHH
Confidence            4799999999999999 544

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.61  E-value=0.022  Score=50.56  Aligned_cols=60  Identities=18%  Similarity=0.125  Sum_probs=37.8

Q ss_pred             CCCEEEEeCcccH---HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCC--ccccccccceEEEe
Q 023563          155 QVDVIGIDEAQFF---EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGS--VIDIIPLADSVTKL  215 (280)
Q Consensus       155 ~p~lLlLDEP~~~---~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~--~~~ll~~aD~i~~L  215 (280)
                      .|-++++||..+.   ..+.+++.+.++ .|..+++++.++..+.+.+|.  ...|+.-|...+++
T Consensus       276 ~~v~l~lDE~~~~~~~~~l~~~l~~~Rk-~Gv~~~l~~Qs~~ql~~~yg~~~a~~i~~n~~t~i~~  340 (433)
T d1e9ra_         276 RRLWLFIDELASLEKLASLADALTKGRK-AGLRVVAGLQSTSQLDDVYGVKEAQTLRASFRSLVVL  340 (433)
T ss_dssp             CCEEEEESCGGGSCBCSSHHHHHHHCTT-TTEEEEEEESCHHHHHHHHCHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEechHhhhcccHHHHHHHHHhCC-CCceEEEEeccHHHHHHHHhHHHHHHHHHhcCcEEEe
Confidence            3446888998332   235566666665 599999999998887654332  12345556554444

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.61  E-value=0.011  Score=46.09  Aligned_cols=20  Identities=30%  Similarity=0.396  Sum_probs=8.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      ++|+|..|+|||||+ +.+.+
T Consensus         9 i~vvG~~~vGKTsLi-~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVL-FRFSE   28 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHH-HHHHh
Confidence            789999999999999 54443

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.34  E-value=0.019  Score=50.92  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=24.5

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .++++..+.|.||.|+||||+. +.+++.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~-~~~~~~  177 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLA-AALLEL  177 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHH-HHHHHH
Confidence            5688899999999999999999 777663

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.33  E-value=0.021  Score=44.43  Aligned_cols=19  Identities=21%  Similarity=0.277  Sum_probs=16.0

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 023563           80 IHVIVGPMFAGKTTTLLRR   98 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~   98 (280)
                      .+.|+|..|+|||||+.+.
T Consensus         4 KivllG~~~vGKTsl~~r~   22 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQM   22 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3689999999999999443

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.023  Score=46.24  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+++|=|+-||||||++ +.|.-
T Consensus         3 k~IviEG~~GsGKST~~-~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFV-KLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHH-HHHHH
T ss_pred             eEEEEECCCCCcHHHHH-HHHHH
Confidence            57899999999999999 77764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.06  E-value=0.019  Score=52.30  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      =+.++||.|+|||-|+ +.|+++
T Consensus        51 NILliGPTGvGKTlLA-r~LAk~   72 (443)
T d1g41a_          51 NILMIGPTGVGKTEIA-RRLAKL   72 (443)
T ss_dssp             CEEEECCTTSSHHHHH-HHHHHH
T ss_pred             cEEEECCCCCCHHHHH-HHHHHH
Confidence            5779999999999999 888774

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.04  E-value=0.19  Score=44.61  Aligned_cols=38  Identities=21%  Similarity=0.136  Sum_probs=20.2

Q ss_pred             CEEEEeCccc---------HHHHHHHHHHHHhhcCCEEEEEEechhH
Q 023563          157 DVIGIDEAQF---------FEDLYDFCREAADHDGKTVIVAGLDGDY  194 (280)
Q Consensus       157 ~lLlLDEP~~---------~~~i~~~l~~l~~~~g~tviivtHdl~~  194 (280)
                      -||++||-..         ..++.++|+-....-...+|..|..-++
T Consensus       117 ~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey  163 (387)
T d1qvra2         117 VILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEY  163 (387)
T ss_dssp             EEEEECCC-------------------HHHHHTTCCCEEEEECHHHH
T ss_pred             eEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCHHHH
Confidence            4689999821         2367888887776645778877765444

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.025  Score=48.24  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           79 EIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        79 ei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+++|+||-++|||||+ +.+.|.
T Consensus        33 ~vvsi~G~~~sGKS~ll-N~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLM-NKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHH-HHHTTC
T ss_pred             EEEEEECCCCCCHHHHH-HHHcCC
Confidence            58999999999999999 888774

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.50  E-value=0.03  Score=43.60  Aligned_cols=19  Identities=21%  Similarity=0.263  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 023563           80 IHVIVGPMFAGKTTTLLRR   98 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~   98 (280)
                      -+.|+|..|+|||||+.+.
T Consensus         4 Kiv~lG~~~vGKTsll~r~   22 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQM   22 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3679999999999999443

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.02  E-value=0.045  Score=46.14  Aligned_cols=21  Identities=14%  Similarity=0.120  Sum_probs=18.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l   99 (280)
                      ..+++|.|.-|.|||||+ +.+
T Consensus        44 ~~~v~I~GmgGiGKTtLA-~~v   64 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIA-SQA   64 (277)
T ss_dssp             SEEEEEECSTTSSHHHHH-HHH
T ss_pred             ceEEEEECCCCCCHHHHH-HHH
Confidence            468999999999999999 554

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=92.00  E-value=0.041  Score=43.62  Aligned_cols=21  Identities=29%  Similarity=0.286  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhcc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +||+|.-.+|||||+ ..|.|.
T Consensus         8 IaiiGhvd~GKSTL~-~~L~g~   28 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLT-KALTGV   28 (195)
T ss_dssp             EEEECSTTSSHHHHH-HHHHTC
T ss_pred             EEEEeccCCcHHHHH-HHHHhh
Confidence            799999999999999 777763

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.67  E-value=0.078  Score=41.72  Aligned_cols=37  Identities=24%  Similarity=0.169  Sum_probs=29.2

Q ss_pred             eEEEEEcCC-CCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563           79 EIHVIVGPM-FAGKTTTLLRRIQAETQKGRNVAVIKSN  115 (280)
Q Consensus        79 ei~~liGpN-GsGKSTLl~~~l~gl~~~g~~i~~~~~~  115 (280)
                      ..+.|.|-+ |+||||+...+...+...|.++.++...
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d   39 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPV   39 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECcc
Confidence            467899997 9999999955555567789899888653

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.47  E-value=0.046  Score=46.41  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcch
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      .++++|.-.||||||+ +.|.|..
T Consensus        26 ~ivVvG~~ssGKSSli-NaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVL-ENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHH-HHHHTSC
T ss_pred             eEEEEeCCCCCHHHHH-HHHhCCC
Confidence            3689999999999999 9999964

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.36  E-value=0.044  Score=46.71  Aligned_cols=22  Identities=36%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+||+|...+|||||+ +.+.+-
T Consensus        12 kiGivG~Pn~GKSTlf-nalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFF-RAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHCC
Confidence            4899999999999999 888764

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.31  E-value=0.43  Score=36.94  Aligned_cols=35  Identities=26%  Similarity=0.239  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHh-cchhCCeeEEEecCC
Q 023563           81 HVIVGPMFAGKTTTLLRRIQ-AETQKGRNVAVIKSN  115 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~-gl~~~g~~i~~~~~~  115 (280)
                      ..+++|.|+|||.....++. .+...++.+.++-|.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~   61 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT   61 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCc
Confidence            34889999999976522221 123345566666554

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.27  E-value=0.05  Score=46.49  Aligned_cols=21  Identities=24%  Similarity=0.169  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhcc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +||+|-..+|||||+ +.+.|-
T Consensus         3 v~lvG~pn~GKStlf-n~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFF-SAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHH-HHHHC-
T ss_pred             EeEECCCCCCHHHHH-HHHHCC
Confidence            799999999999999 999874

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.18  E-value=0.053  Score=46.19  Aligned_cols=26  Identities=27%  Similarity=0.431  Sum_probs=23.6

Q ss_pred             eeeeEeeCceEEEEEcCCCCcHHHHH
Q 023563           70 EASVSSPSGEIHVIVGPMFAGKTTTL   95 (280)
Q Consensus        70 ~isl~i~~Gei~~liGpNGsGKSTLl   95 (280)
                      |.=+.|-+|+..+|+|+.|+|||+|+
T Consensus        59 D~l~pig~GQr~~Ifg~~g~GKt~l~   84 (276)
T d1fx0a3          59 DAMIPVGRGQRELIIGDRQTGKTAVA   84 (276)
T ss_dssp             TTTSCCBTTCBCBEEESSSSSHHHHH
T ss_pred             eccccccCCceEeeccCCCCChHHHH
Confidence            44478999999999999999999999

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.08  E-value=0.05  Score=45.90  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhcch
Q 023563           81 HVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      ++++|.-.||||||+ +.|.|..
T Consensus        29 ivvvG~~SsGKSsli-NaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVL-ENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHH-HHHHTSC
T ss_pred             EEEEcCCCCCHHHHH-HHHhCCC
Confidence            779999999999999 9998964

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.01  E-value=0.066  Score=46.33  Aligned_cols=25  Identities=32%  Similarity=0.376  Sum_probs=20.5

Q ss_pred             eeeEe-eCceEEEEEcCCCCcHHHHH
Q 023563           71 ASVSS-PSGEIHVIVGPMFAGKTTTL   95 (280)
Q Consensus        71 isl~i-~~Gei~~liGpNGsGKSTLl   95 (280)
                      .|-++ +.|++..+.|.||+|||||-
T Consensus         6 csan~~~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1           6 CSANVGEKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEEECTTSCEEEEECSTTSSHHHHH
T ss_pred             cccccCCCCCEEEEEccCCCCcccce
Confidence            34444 46899999999999999987

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.00  E-value=0.069  Score=46.31  Aligned_cols=24  Identities=33%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             eeEee-CceEEEEEcCCCCcHHHHH
Q 023563           72 SVSSP-SGEIHVIVGPMFAGKTTTL   95 (280)
Q Consensus        72 sl~i~-~Gei~~liGpNGsGKSTLl   95 (280)
                      |-++. .|++..+.|.||+|||||-
T Consensus         7 san~~~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1           7 SANVGKEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEECTTCCEEEEEECTTSCHHHHT
T ss_pred             ccccCCCCCEEEEEccCCCCccccc
Confidence            44444 4889999999999999997

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.95  E-value=0.059  Score=43.42  Aligned_cols=19  Identities=26%  Similarity=0.226  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 023563           81 HVIVGPMFAGKTTTLLRRIQ  100 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~  100 (280)
                      ++|+|.-++|||||+ ..|.
T Consensus         6 i~iiGhvd~GKSTL~-~~Ll   24 (204)
T d2c78a3           6 VGTIGHVDHGKTTLT-AALT   24 (204)
T ss_dssp             EEEECSTTSSHHHHH-HHHH
T ss_pred             EEEEeCCCCcHHHHH-HHHH
Confidence            789999999999999 5553

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.88  E-value=0.038  Score=47.33  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=26.5

Q ss_pred             eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      |.=+.+-+|+..+|+|+.|+|||+|+..++.+
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            45588999999999999999999998444443

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.51  E-value=0.12  Score=44.98  Aligned_cols=33  Identities=21%  Similarity=0.144  Sum_probs=24.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEec
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIK  113 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~  113 (280)
                      .+.|=|+-|+||||++ +.|......+..+.+++
T Consensus         8 rI~iEG~iGsGKSTl~-~~L~~~l~~~~~v~~~~   40 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTG-RVMASAASGGSPTLYFP   40 (333)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHSGGGCSSCEEEEC
T ss_pred             EEEEECCccCCHHHHH-HHHHHHhccCCCeEEEe
Confidence            5678899999999999 88877654444555554

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=90.51  E-value=0.032  Score=48.12  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcch
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAET  103 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~  103 (280)
                      -+.|+||.|+|||||+ +.+.++.
T Consensus        30 ~vLl~G~pG~GKT~la-r~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAV-RALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHH-HHHHHHS
T ss_pred             eEEEECCCCccHHHHH-HHHHHhC
Confidence            4789999999999999 8887653

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.29  E-value=0.22  Score=39.45  Aligned_cols=30  Identities=17%  Similarity=0.265  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEec
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIK  113 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~  113 (280)
                      ++.|+|+.+||||.+. ..+..   .+.++.|+.
T Consensus         1 iiLVtGGarSGKS~~A-E~l~~---~~~~~~YiA   30 (180)
T d1c9ka_           1 MILVTGGARSGKSRHA-EALIG---DAPQVLYIA   30 (180)
T ss_dssp             CEEEEECTTSSHHHHH-HHHHC---SCSSEEEEE
T ss_pred             CEEEECCCCccHHHHH-HHHHh---cCCCcEEEE
Confidence            4679999999999999 44443   234455553

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=90.12  E-value=0.073  Score=46.96  Aligned_cols=27  Identities=19%  Similarity=0.347  Sum_probs=21.1

Q ss_pred             EeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +++++. +.++||.|+|||-|. +.|+.+
T Consensus        65 ~~p~~n-iLfiGPTGvGKTElA-k~LA~~   91 (364)
T d1um8a_          65 ELSKSN-ILLIGPTGSGKTLMA-QTLAKH   91 (364)
T ss_dssp             TCCCCC-EEEECCTTSSHHHHH-HHHHHH
T ss_pred             cCCCcc-eeeeCCCCccHHHHH-HHHHhh
Confidence            345665 558899999999999 888764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.85  E-value=0.083  Score=44.47  Aligned_cols=18  Identities=28%  Similarity=0.231  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCcHHHHHHH
Q 023563           80 IHVIVGPMFAGKTTTLLR   97 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~   97 (280)
                      .+.|.|+-||||||.+..
T Consensus        26 ~~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             CEEEEECTTSCHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHH
Confidence            366889999999998843

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=89.85  E-value=0.076  Score=44.65  Aligned_cols=22  Identities=27%  Similarity=0.247  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      .+||||-..+|||||+ +.+.+-
T Consensus         4 ~~GivG~Pn~GKSTlf-~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLF-NALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHT
T ss_pred             eEEEECCCCCCHHHHH-HHHHCC
Confidence            5899999999999999 888864

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.81  E-value=0.072  Score=44.34  Aligned_cols=36  Identities=17%  Similarity=0.228  Sum_probs=23.1

Q ss_pred             ccCCCEEEEeCccc-HHHHHHHHHHHHhhcCCEEEEEE
Q 023563          153 YDQVDVIGIDEAQF-FEDLYDFCREAADHDGKTVIVAG  189 (280)
Q Consensus       153 ~~~p~lLlLDEP~~-~~~i~~~l~~l~~~~g~tviivt  189 (280)
                      ..+.+++++||.+- ....++++..+... +..+++++
T Consensus       204 ~~~~~~i~vDE~QD~~~~~~~~l~~~~~~-~~~~~~~G  240 (306)
T d1uaaa1         204 QNKIRYLLVDEYQDTNTSQYELVKLLVGS-RARFTVVG  240 (306)
T ss_dssp             HTTCSEEEESCGGGCBHHHHHHHHHHHTT-TCCEEEEC
T ss_pred             HHHhhHHHHHHHHHhhHHHHhhhhhcccC-CCcceEee
Confidence            35789999999932 22334566666654 56666665

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.17  E-value=0.1  Score=41.55  Aligned_cols=22  Identities=32%  Similarity=0.274  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      -++|+|.=.+|||||+ ..|.|.
T Consensus        10 ni~iiGhVd~GKSTL~-~~L~~~   31 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLV-QAITGI   31 (205)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHSC
T ss_pred             EEEEEEccCCcHHHHH-HHHHhh
Confidence            4899999999999999 777663

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.57  E-value=0.097  Score=45.42  Aligned_cols=19  Identities=37%  Similarity=0.466  Sum_probs=17.9

Q ss_pred             CceEEEEEcCCCCcHHHHH
Q 023563           77 SGEIHVIVGPMFAGKTTTL   95 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl   95 (280)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6789999999999999998

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=88.13  E-value=0.11  Score=45.22  Aligned_cols=32  Identities=28%  Similarity=0.244  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEec
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIK  113 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~  113 (280)
                      .+.|=|+-||||||++ +.|.... .+..+.+++
T Consensus         6 rI~IEG~iGsGKTTl~-~~La~~l-~~~~v~~~~   37 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTT-QLLVALG-SRDDIVYVP   37 (329)
T ss_dssp             EEEECSCTTSSHHHHH-HHHTC-----CCEEEEC
T ss_pred             EEEEECCcCCCHHHHH-HHHHHHh-CCCCeEEec
Confidence            4788999999999999 8887542 233454443

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.72  E-value=0.1  Score=42.44  Aligned_cols=40  Identities=25%  Similarity=0.125  Sum_probs=26.3

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN  115 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~  115 (280)
                      -.|+-+.+++|.|+|||+..+..+.-+...|+++.++-|.
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt   95 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPT   95 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESC
T ss_pred             HCCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEecc
Confidence            4688888999999999987622222223355666666654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.99  E-value=0.16  Score=41.16  Aligned_cols=16  Identities=25%  Similarity=0.399  Sum_probs=14.9

Q ss_pred             EEEEcCCCCcHHHHHH
Q 023563           81 HVIVGPMFAGKTTTLL   96 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~   96 (280)
                      +|++|.-++|||||+-
T Consensus         6 i~viGHVd~GKTTL~~   21 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVG   21 (224)
T ss_dssp             EEEEESTTSSHHHHHH
T ss_pred             EEEEecCCCCHHHHHH
Confidence            7899999999999993

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.93  E-value=0.11  Score=40.97  Aligned_cols=38  Identities=24%  Similarity=0.219  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCcHHHHHH-HHHhcchhCCeeEEEecCC
Q 023563           77 SGEIHVIVGPMFAGKTTTLL-RRIQAETQKGRNVAVIKSN  115 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~-~~l~gl~~~g~~i~~~~~~  115 (280)
                      .|.-+.|.+|.|||||+... .++..+ ..+.++.++-|.
T Consensus        39 ~~~~~il~apTGsGKT~~a~l~i~~~~-~~~~~vl~l~P~   77 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLAEMAMVREA-IKGGKSLYVVPL   77 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred             cCCCEEEEcCCCCchhHHHHHHHHHHh-hccCcceeeccc
Confidence            45667799999999998751 222222 233445555443

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.90  E-value=0.29  Score=38.81  Aligned_cols=36  Identities=36%  Similarity=0.374  Sum_probs=27.1

Q ss_pred             ceEEEEE-cCCCCcHHHHHHHHHhcchhCCeeEEEec
Q 023563           78 GEIHVIV-GPMFAGKTTTLLRRIQAETQKGRNVAVIK  113 (280)
Q Consensus        78 Gei~~li-GpNGsGKSTLl~~~l~gl~~~g~~i~~~~  113 (280)
                      |.++++. +.-|+||||+...+...+...|+++.++.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD   38 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD   38 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            6788999 77899999999444444556778887775

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.55  E-value=1.1  Score=35.35  Aligned_cols=23  Identities=30%  Similarity=0.274  Sum_probs=16.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHH
Q 023563           77 SGEIHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl~~~l   99 (280)
                      .+....|.+|.|+|||-.++.++
T Consensus        84 ~~~~~ll~~~tG~GKT~~a~~~~  106 (206)
T d2fz4a1          84 VDKRGCIVLPTGSGKTHVAMAAI  106 (206)
T ss_dssp             TTSEEEEEESSSTTHHHHHHHHH
T ss_pred             hCCCcEEEeCCCCCceehHHhHH
Confidence            34455688999999997763333

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=86.45  E-value=0.17  Score=40.34  Aligned_cols=20  Identities=30%  Similarity=0.228  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhc
Q 023563           81 HVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l~g  101 (280)
                      +|++|.-++|||||+ ..|.+
T Consensus         6 i~iiGHvd~GKSTL~-~~l~~   25 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLT-AAITK   25 (196)
T ss_dssp             EEEESSTTSSHHHHH-HHHHH
T ss_pred             EEEEeCCCCcHHHHH-HHHHH
Confidence            789999999999999 65554

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=86.08  E-value=0.22  Score=43.25  Aligned_cols=34  Identities=18%  Similarity=0.092  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEecC
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVIKS  114 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~~~  114 (280)
                      .+.|=|+-||||||++ +.|.. +...|..+.+++.
T Consensus         7 rI~IEG~iGsGKSTl~-~~L~~~l~~~g~~v~~~~E   41 (331)
T d1osna_           7 RIYLDGAYGIGKTTAA-EEFLHHFAITPNRILLIGE   41 (331)
T ss_dssp             EEEEEESSSSCTTHHH-HHHHHTTTTSGGGEEEECC
T ss_pred             EEEEECCCCCCHHHHH-HHHHHHHhhcCCceEEEeC
Confidence            4788999999999999 77765 3445556665543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.95  E-value=0.2  Score=41.21  Aligned_cols=20  Identities=35%  Similarity=0.360  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 023563           80 IHVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l   99 (280)
                      -++++|.-++|||||+.+++
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            37899999999999994433

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=84.99  E-value=0.38  Score=39.39  Aligned_cols=35  Identities=23%  Similarity=0.194  Sum_probs=26.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecC
Q 023563           80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKS  114 (280)
Q Consensus        80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~  114 (280)
                      .++|.|.=|+||||+..++...+...|+++..+.-
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~   37 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGC   37 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEec
Confidence            67899999999999995544455667888776643

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.38  E-value=0.49  Score=37.84  Aligned_cols=19  Identities=26%  Similarity=0.193  Sum_probs=17.2

Q ss_pred             CceEEEEEcCCCCcHHHHH
Q 023563           77 SGEIHVIVGPMFAGKTTTL   95 (280)
Q Consensus        77 ~Gei~~liGpNGsGKSTLl   95 (280)
                      .|+=+.+..|.|||||.-.
T Consensus        46 ~g~dvl~~a~TGsGKT~a~   64 (212)
T d1qdea_          46 EGHDVLAQAQSGTGKTGTF   64 (212)
T ss_dssp             TTCCEEEECCTTSSHHHHH
T ss_pred             cCCCEEeecccccchhhhh
Confidence            6788899999999999877

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=82.36  E-value=0.36  Score=39.15  Aligned_cols=18  Identities=28%  Similarity=0.471  Sum_probs=16.0

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 023563           81 HVIVGPMFAGKTTTLLRRI   99 (280)
Q Consensus        81 ~~liGpNGsGKSTLl~~~l   99 (280)
                      ++++|.-.+|||||+ ..|
T Consensus        12 i~viGHVd~GKSTL~-~~L   29 (222)
T d1zunb3          12 FLTCGNVDDGKSTLI-GRL   29 (222)
T ss_dssp             EEEECCTTSSHHHHH-HHH
T ss_pred             EEEEcCCCCCHHHHH-HHH
Confidence            689999999999999 555

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=81.64  E-value=0.39  Score=39.54  Aligned_cols=24  Identities=25%  Similarity=0.141  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           78 GEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        78 Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +.-+.|.|+.|+||+++. +.|...
T Consensus        23 ~~pvlI~Ge~GtGK~~~A-~~ih~~   46 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVA-RLIHKL   46 (247)
T ss_dssp             CSCEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CCCEEEECCCCcCHHHHH-HHHHHh
Confidence            345789999999999999 888754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=81.29  E-value=0.35  Score=40.45  Aligned_cols=72  Identities=13%  Similarity=0.048  Sum_probs=43.8

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhcc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYD  154 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~  154 (280)
                      .++-.++.|.||-++||||++ ..|..+.  |.... +...              ...      .         ..+-+.
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~-~~i~~~l--g~~~~-~~~~--------------~~~------f---------~l~~l~  147 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIA-EAIAHTV--PFYGC-VNWT--------------NEN------F---------PFNDCV  147 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHH-HHHHHHS--SCEEE-CCTT--------------CSS------C---------TTGGGS
T ss_pred             CCccEEEEEEcCCCCCHHHHH-HHHHHHh--cchhh-cccc--------------CCC------c---------cccccC
Confidence            355668899999999999999 7776543  22211 1100              000      0         011245


Q ss_pred             CCCEEEEeCcccHHHHHHHHHHHHh
Q 023563          155 QVDVIGIDEAQFFEDLYDFCREAAD  179 (280)
Q Consensus       155 ~p~lLlLDEP~~~~~i~~~l~~l~~  179 (280)
                      +..++++|||+......+.++++..
T Consensus       148 ~k~~~~~~e~~~~~~~~~~~K~l~g  172 (267)
T d1u0ja_         148 DKMVIWWEEGKMTAKVVESAKAILG  172 (267)
T ss_dssp             SCSEEEECSCCEETTTHHHHHHHHT
T ss_pred             CCEEEEEeCCCccccHHHHHHHhcC
Confidence            7889999999654444556676654

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=80.80  E-value=0.48  Score=44.93  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=20.5

Q ss_pred             eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563           76 PSGEIHVIVGPMFAGKTTTLLRRIQA  101 (280)
Q Consensus        76 ~~Gei~~liGpNGsGKSTLl~~~l~g  101 (280)
                      .+.+.+.|.|.+|||||+-. +.+..
T Consensus        84 ~~~QsIiisGeSGsGKTe~~-k~il~  108 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEAS-KKIMQ  108 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHH-HHHHH
Confidence            45689999999999999999 65543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=80.50  E-value=0.31  Score=39.34  Aligned_cols=27  Identities=22%  Similarity=0.208  Sum_probs=22.6

Q ss_pred             eeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563           75 SPSGEIHVIVGPMFAGKTTTLLRRIQAE  102 (280)
Q Consensus        75 i~~Gei~~liGpNGsGKSTLl~~~l~gl  102 (280)
                      +++-..+.|.||.++|||+++ ..|..+
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~-~sl~~~   76 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFG-MSFIHF   76 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHH-HHHHHH
Confidence            577789999999999999999 656554