Citrus Sinensis ID: 023598

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MQTLLLPAGRSGISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSLKTLQSSSLANRGSKHCFPILASSQIPPTFTSQNDESEKAKLAQVSKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQGITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVPRVA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mqtlllpagrsgisptAAAAShlrrapslnigtnvsflssnslpslktlqssslanrgskhcfpilassqipptftsqndesEKAKLAQVSKRLENTARHFkrfgsfgfwGQLVCTVVSAVILSFSIIitgkvtspttfyctaGGIAAAFISVFWSFGYIRLSEKLRktasdpskappraDVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALttsanpyyqgitpgyspvLALDVFLVQASANTILSHFLGLLFSLELLrsvtlppsesipvprva
Flexible Loop (DISEMBL)
mqtlllpagrsgISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSLKTLQSSSLANRGSKHCFPILASSQIPPTFTSQNDESEKAKLAQVSKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLrktasdpskappradvVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQGITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRsvtlppsesipvprva
Low Complexity Region (SEG)
MQTLLLPAGRSGISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSLKTLQSSSLANRGSKHCFPILASSQIPPTFTSQNDESEKAKLAQVSKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQGITPGYSPVLALDVFLVQASANTIlshflgllfslellrsvtlPPSESIPVPRVA
Disordered region (IsUnstruct)
************************************************************************************************TARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLS*******************VKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQGITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVT*************
Disordered Region (DISOPRED)
****************************LNIGT****************************************************************ARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLS*******************VKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANP**QGITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLP***********
Disordered Region (DISEMBL)
MQTLLLPAGRSGISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSLKTLQSSSLANRGSKHCFPILASSQIPPT***************VSKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEK**************ADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQGITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPS*********
Disordered Region (DISPRO)
********GRSGISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSLKTLQSSSL****SKHCFPIL***QI**********SEKAKLAQVSKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQGITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTL************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQTLLLPAGRSGISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSLKTLQSSSLANRGSKHCFPILASSQIPPTFTSQNDESEKAKLAQVSKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQGITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVPRVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
Q9SHU7	296	Protein TIC 21, chloropla	yes	no	0.975	0.922	0.610	2e-89

>sp|Q9SHU7|TIC21_ARATH Protein TIC 21, chloroplastic OS=Arabidopsis thaliana GN=TIC21 PE=1 SV=1

 Score =  329 bits (843), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/303 (61%), Positives = 224/303 (73%), Gaps = 30/303 (9%)

Query: 1   MQTLLLP-AGRSGISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSLKTL-----QSSSL 54
           MQ+LLLP A  SG+S  A     LR  P      N   LS+ SLP    L     + +++
Sbjct: 1   MQSLLLPPASSSGVSAVA-----LR--PGFQHSFNHQSLSTRSLPLFNPLLLAPKKKTTI 53

Query: 55  ANR--------------GSKHCF-PILASSQIP--PTFTSQNDESEKAKLAQVSKRLENT 97
           ++               GSK  F P   +   P  P+    ++E +KAKLAQV+KRLE T
Sbjct: 54  SSYQSPPSLSVYGFQIGGSKPSFTPSTVAFSYPTSPSSVPGDNEVDKAKLAQVAKRLEKT 113

Query: 98  ARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSF 157
           +R+FKR GS GFWGQLV TVV+AVILSFSI++TGK TSP TFY TA GIAAAF+SVFWSF
Sbjct: 114 SRYFKRLGSIGFWGQLVSTVVAAVILSFSIVVTGKPTSPATFYATASGIAAAFVSVFWSF 173

Query: 158 GYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALT 217
           GYIRLSE+LR+T+ DP+KAPPRADVVK L++GI VN++GMG+A+LGMQATVG LVAKALT
Sbjct: 174 GYIRLSERLRRTSIDPAKAPPRADVVKGLRSGIMVNILGMGSALLGMQATVGFLVAKALT 233

Query: 218 TSANPYYQGITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVP 277
           TSANP+YQG++ GYSPVLALDVFLVQASANT+LSHFLGL+ SLELLRSVT+P SES+ VP
Sbjct: 234 TSANPFYQGVSQGYSPVLALDVFLVQASANTLLSHFLGLVCSLELLRSVTVPNSESVVVP 293

Query: 278 RVA 280
           +VA
Sbjct: 294 KVA 296

Involved in chloroplast protein import across the inner envelope membrane. Acts also as a chloroplast permease regulating the iron transport and homeostasis. Involved in the uptake and sequestration of iron in plastids.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
224056190	293	predicted protein [Populus trichocarpa]	0.996	0.952	0.693	1e-103
225428902	293	PREDICTED: protein TIC 21, chloroplastic	0.967	0.924	0.698	1e-102
356575678	284	PREDICTED: uncharacterized protein LOC10	0.975	0.961	0.701	1e-101
363807616	284	uncharacterized protein LOC100775427 [Gl	0.964	0.950	0.687	1e-101
224103661	293	predicted protein [Populus trichocarpa]	0.967	0.924	0.678	1e-101
118484059	293	unknown [Populus trichocarpa]	0.996	0.952	0.687	1e-100
255555295	291	conserved hypothetical protein [Ricinus	0.985	0.948	0.684	3e-99
449438361	292	PREDICTED: protein TIC 21, chloroplastic	0.985	0.945	0.662	6e-96
108735959	283	Tic21 [Pisum sativum]	0.967	0.957	0.712	2e-94
388490728	283	unknown [Medicago truncatula]	0.975	0.964	0.689	5e-94

>gi|224056190|ref|XP_002298747.1| predicted protein [Populus trichocarpa] gi|222846005|gb|EEE83552.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/294 (69%), Positives = 232/294 (78%), Gaps = 15/294 (5%)

Query: 1   MQTLLLPAGRSGISPTAAAA---------SHLRRAPSLNIGTNVSFLSSNSLPSLKTLQS 51
           MQTLL+PA RSG + + AA           HL   P  N    +   S+  LPS   + S
Sbjct: 1   MQTLLMPAVRSGTAASMAAVPTPPLIHREKHLPLLPPPN-SILIFHKSTQPLPSFSYISS 59

Query: 52  SS----LANRGSKHCF-PILASSQIPPTFTSQNDESEKAKLAQVSKRLENTARHFKRFGS 106
            S    L N+  K  F    AS+   P F SQNDE+E+AKLAQV+KRLENT+R+FKR GS
Sbjct: 60  LSIYDHLRNKTPKKLFTQTNASNATAPAFNSQNDEAERAKLAQVAKRLENTSRYFKRLGS 119

Query: 107 FGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKL 166
            GFWGQL+C+ V+AVILSFS+++TGK+TSP TFY T GGIAAAFISVFWSFGYIRLSEKL
Sbjct: 120 LGFWGQLICSTVAAVILSFSVVVTGKITSPPTFYATLGGIAAAFISVFWSFGYIRLSEKL 179

Query: 167 RKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQG 226
           RKTA+DPSKAPPRADVVKSLKNGI +NL+GMGAAILGMQATVGLLVAKALT+SANPYYQ 
Sbjct: 180 RKTANDPSKAPPRADVVKSLKNGIILNLLGMGAAILGMQATVGLLVAKALTSSANPYYQQ 239

Query: 227 ITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVPRVA 280
           I+PGYSPVLALDVFLVQASANTILSHFLGL+FS ELLRSVTLPPSE+IPV +VA
Sbjct: 240 ISPGYSPVLALDVFLVQASANTILSHFLGLVFSSELLRSVTLPPSENIPVFKVA 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428902|ref|XP_002285372.1| PREDICTED: protein TIC 21, chloroplastic [Vitis vinifera] gi|296090447|emb|CBI40266.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/302 (69%), Positives = 239/302 (79%), Gaps = 31/302 (10%)

Query: 1   MQTLLLPAGRSGISPTAAAASHLRRAPS-LNIGT-----NVSFLSSNSLPSLKTLQS--- 51
           MQTLLLPA RSG +PTAA     R APS LN+       ++SF  S + P      S   
Sbjct: 1   MQTLLLPAARSG-NPTAALPLP-RAAPSPLNLHRRLPRPSLSFNHSTANPPFSPPNSLSS 58

Query: 52  -------------SSLANRGSKHCFPILASSQIPPTFTSQNDESEKAKLAQVSKRLENTA 98
                         +L  RG++     LASS I PTF S +DESEKAKLAQV+KRLENT+
Sbjct: 59  LSLSSLKPSLSSYDALGQRGTR-----LASS-ISPTFPS-SDESEKAKLAQVAKRLENTS 111

Query: 99  RHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFG 158
           R+F+R G+ GFWGQLVCTVV+AVILSFS++ITGK++SP TFY T GGI AAFISVFWSFG
Sbjct: 112 RYFRRLGNLGFWGQLVCTVVAAVILSFSVVITGKISSPATFYSTTGGIVAAFISVFWSFG 171

Query: 159 YIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTT 218
           YIRLS++LRKTAS+PSKAPPRADVVKSLKNGI +NL+GMGAAILGMQATVGLLVAKALTT
Sbjct: 172 YIRLSDRLRKTASEPSKAPPRADVVKSLKNGIVLNLLGMGAAILGMQATVGLLVAKALTT 231

Query: 219 SANPYYQGITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVPR 278
           SANPYYQGI+PG SPVLALDVFLVQASANTILSHFLGL+FSLELLRSVTLPPSE+IPVP+
Sbjct: 232 SANPYYQGISPGSSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPPSETIPVPK 291

Query: 279 VA 280
            A
Sbjct: 292 AA 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575678|ref|XP_003555965.1| PREDICTED: uncharacterized protein LOC100807031 [Glycine max]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/291 (70%), Positives = 230/291 (79%), Gaps = 18/291 (6%)

Query: 1   MQTLLLPAGRSG---ISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSL-------KTLQ 50
           MQTLLLPA  +G     P +A+A    R P         FL  NSLPS         +  
Sbjct: 1   MQTLLLPATCAGSFTAVPLSASAVAAPRLPQ-------PFLRPNSLPSFPLNLTLSSSSF 53

Query: 51  SSSLANR-GSKHCFPILASSQIPPTFTSQNDESEKAKLAQVSKRLENTARHFKRFGSFGF 109
           S+S+A +  +K  F   ASSQ+ P FT  NDESEKAKL  V+KRLE TAR+FKR G+ GF
Sbjct: 54  SNSIARQPWTKLPFTASASSQVSPAFTPSNDESEKAKLELVAKRLEKTARYFKRLGNLGF 113

Query: 110 WGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKT 169
           WGQLVCTVV+AVILSFS+I+TGKVTSP TFY TAGGI AAFISVFWSFGYIRLSEKLRKT
Sbjct: 114 WGQLVCTVVAAVILSFSVIVTGKVTSPATFYATAGGIVAAFISVFWSFGYIRLSEKLRKT 173

Query: 170 ASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQGITP 229
           ++DP+KAPPRADVVK LKNGI +NL+GMGAAILGMQATVGLLVAKALT+SANPYYQGI+P
Sbjct: 174 SNDPTKAPPRADVVKGLKNGIVLNLLGMGAAILGMQATVGLLVAKALTSSANPYYQGISP 233

Query: 230 GYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVPRVA 280
           G +PVLALDVFLVQASANTILSHFLGL+FSLELLRSVTLPPSE+ P P+ A
Sbjct: 234 GSTPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPPSEATPFPKFA 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807616|ref|NP_001241900.1| uncharacterized protein LOC100775427 [Glycine max] gi|255641354|gb|ACU20954.1| unknown [Glycine max]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/294 (68%), Positives = 232/294 (78%), Gaps = 24/294 (8%)

Query: 1   MQTLLLPAGRSG------ISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSL-------K 47
           MQTLLLPA R+G      +S +A A+  L +           FLS NS PSL        
Sbjct: 1   MQTLLLPATRAGSFTAVPLSASAVASPPLPQ----------PFLSPNSFPSLLLNRARSS 50

Query: 48  TLQSSSLANRGSKHC-FPILASSQIPPTFTSQNDESEKAKLAQVSKRLENTARHFKRFGS 106
           +  SSS+A +  K   F   ASSQ+ P FT  NDES+KAKL QV+KRLE TAR+FKR G+
Sbjct: 51  SSFSSSIARQPWKKLPFTASASSQVSPAFTPSNDESDKAKLEQVAKRLEKTARYFKRLGN 110

Query: 107 FGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKL 166
            GFWGQLVCTVV+AVILSFS+++TGKVTSP TFY TAGGI AAFISVFWSFGYIRLSEKL
Sbjct: 111 LGFWGQLVCTVVAAVILSFSVVVTGKVTSPATFYATAGGIVAAFISVFWSFGYIRLSEKL 170

Query: 167 RKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQG 226
           RKT++DP+KAPPRADVVK LKNGI +NL+GMGAAILGMQATVGLLVAKALT+SANPYYQG
Sbjct: 171 RKTSNDPTKAPPRADVVKGLKNGIMLNLLGMGAAILGMQATVGLLVAKALTSSANPYYQG 230

Query: 227 ITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVPRVA 280
           I+PG +PVLALDVFLVQA+ANTI SHFLGL+FSLELLRSVTLPPS++ P P+ A
Sbjct: 231 ISPGSTPVLALDVFLVQAAANTIPSHFLGLVFSLELLRSVTLPPSDATPFPKFA 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103661|ref|XP_002313144.1| predicted protein [Populus trichocarpa] gi|222849552|gb|EEE87099.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/302 (67%), Positives = 231/302 (76%), Gaps = 31/302 (10%)

Query: 1   MQTLLLPAGRSGISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSLKTLQSSS------- 53
           MQTLLLPA RSG + +AAA       P L     V  LS  +LPS     S+S       
Sbjct: 1   MQTLLLPAVRSGTAYSAAAGP----TPPL-----VHRLSHRALPSPPNTLSTSHKSTQPL 51

Query: 54  --------------LANRGSKH-CFPILASSQIPPTFTSQNDESEKAKLAQVSKRLENTA 98
                         L N+ SK       AS+   P F SQNDE+E+AKLAQV+KRLENT+
Sbjct: 52  PLFSYSSSLSSYDPLKNKTSKLLSTQTNASNATAPAFNSQNDEAERAKLAQVAKRLENTS 111

Query: 99  RHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFG 158
           R+FKR G+ GFWGQL+C  V+AVILSFS+++TGK+ SP TFY T GGIAAAFISVFWSFG
Sbjct: 112 RYFKRLGNLGFWGQLICATVAAVILSFSVVVTGKIPSPPTFYATLGGIAAAFISVFWSFG 171

Query: 159 YIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTT 218
           YIRLSEKLRKTA+DPSKAPPRADVVKSLKNGI +NL+GMGAAILGMQATVGLLVAKALT+
Sbjct: 172 YIRLSEKLRKTANDPSKAPPRADVVKSLKNGIVLNLLGMGAAILGMQATVGLLVAKALTS 231

Query: 219 SANPYYQGITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVPR 278
           SANPYYQ +TPGYSPVLALDVFLVQASANTILSHFLGL+FSLELLRSVTLPPSES+PV +
Sbjct: 232 SANPYYQQMTPGYSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPPSESLPVFK 291

Query: 279 VA 280
           VA
Sbjct: 292 VA 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484059|gb|ABK93915.1| unknown [Populus trichocarpa]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/294 (68%), Positives = 229/294 (77%), Gaps = 15/294 (5%)

Query: 1   MQTLLLPAGRSGISPTAAAA---------SHLRRAPSLNIGTNVSFLSSNSLPSLKTLQS 51
           MQTLLLPA RSG + +AA           SH R  PS     + S  S+  LP      S
Sbjct: 1   MQTLLLPAVRSGTAYSAAVGPTPPLVHRLSH-RALPSPPNTLSTSHKSTQPLPLFSYSSS 59

Query: 52  SSLANRGSKHCFPIL-----ASSQIPPTFTSQNDESEKAKLAQVSKRLENTARHFKRFGS 106
            S  +        +L     AS+   P F SQNDE+E+AKLAQV+KRLENT+R+FKR G+
Sbjct: 60  LSSYDPLKNETSKLLSTQTNASNATAPAFNSQNDEAERAKLAQVAKRLENTSRYFKRLGN 119

Query: 107 FGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKL 166
            GFWGQL+C  V+AVILSFS+++TGK+ SP TFY T GGIAAAFISVFWSFGYIRLSEKL
Sbjct: 120 LGFWGQLICATVAAVILSFSVVVTGKIPSPPTFYATLGGIAAAFISVFWSFGYIRLSEKL 179

Query: 167 RKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQG 226
           RKTA+DPSKAPPRADVVKSLKNGI +NL+GMGAAILGMQATVGLLVAKALT+SANPYYQ 
Sbjct: 180 RKTANDPSKAPPRADVVKSLKNGIVLNLLGMGAAILGMQATVGLLVAKALTSSANPYYQQ 239

Query: 227 ITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVPRVA 280
           +TPGYSPVLALDVFLVQASANTILSHFLGL+FSLELLRSVTLPPSES+PV +VA
Sbjct: 240 MTPGYSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPPSESLPVFKVA 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555295|ref|XP_002518684.1| conserved hypothetical protein [Ricinus communis] gi|223542065|gb|EEF43609.1| conserved hypothetical protein [Ricinus communis]

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 202/295 (68%), Positives = 226/295 (76%), Gaps = 19/295 (6%)

Query: 1   MQTLLLPAGRSGISPTAAAASHLRRAPSLNIGTNVSFLSSNSL-PSLKTLQSSSLANRGS 59
           MQTLLLPA  S    +AA A+ +  AP L    N    +  SL P   +L S+      S
Sbjct: 1   MQTLLLPAVHS----SAATAATISPAPPLLYYRNRLTTNRQSLYPPNYSLNSTKPITFPS 56

Query: 60  KHCFPILASSQIPPTFTS--------------QNDESEKAKLAQVSKRLENTARHFKRFG 105
               P  A S   P FT                ND+ EK+KLAQV+KRLE+TAR+FKR G
Sbjct: 57  LSYDPFKAQSFNNPPFTKINASSSPVSPSVTPPNDDVEKSKLAQVAKRLESTARYFKRLG 116

Query: 106 SFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEK 165
           S GFWGQLVCTVV+AVILSFSI+ITGK++SP TFY TA GIAAAFISVFWSFGYIRLS+K
Sbjct: 117 SLGFWGQLVCTVVAAVILSFSIVITGKISSPATFYSTAAGIAAAFISVFWSFGYIRLSDK 176

Query: 166 LRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQ 225
           L+KTA+DPSKAPPRADVV+ LKNGI VNL+GMGAAILGMQATVGLLVAKALT+SANPYYQ
Sbjct: 177 LKKTANDPSKAPPRADVVRGLKNGIVVNLLGMGAAILGMQATVGLLVAKALTSSANPYYQ 236

Query: 226 GITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVPRVA 280
           GI+PGYSPVLALDVFLVQASANTILSHFLGL+FSLELLRSVTLP +E IPVPRVA
Sbjct: 237 GISPGYSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPAAEGIPVPRVA 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438361|ref|XP_004136957.1| PREDICTED: protein TIC 21, chloroplastic-like [Cucumis sativus] gi|449519878|ref|XP_004166961.1| PREDICTED: protein TIC 21, chloroplastic-like [Cucumis sativus]

 Score =  356 bits (914), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 196/296 (66%), Positives = 225/296 (76%), Gaps = 20/296 (6%)

Query: 1   MQTLLLPAGRSGISPTAAAAS----HLRRAPSLNIGTNVSFLSSNSLPSLKTLQSS---- 52
           MQ+LL P  R+G  P  AA      HL R     I    SF   NSLP    + SS    
Sbjct: 1   MQSLLSPVARTGPFPATAAVYSSDLHLSRFHRRPISVRHSF---NSLPPFSAIPSSSSSL 57

Query: 53  -------SLANRGSKHCFPILASSQ-IPPTFTSQNDESEKAKLAQVSKRLENTARHFKRF 104
                  +L +   + C    ASS  I PT  S NDE+EKAKLAQV+KRLE T+++FKR 
Sbjct: 58  LLLKTFGTLKHSRGQLCSETRASSSPISPT-VSPNDEAEKAKLAQVAKRLEKTSKYFKRL 116

Query: 105 GSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSE 164
           GS GFWGQLVCT+V+AVILSFS++ITGK+TSP TFY TAGGI AAFISVFWSFGYIRLS+
Sbjct: 117 GSLGFWGQLVCTIVAAVILSFSVVITGKITSPATFYATAGGIVAAFISVFWSFGYIRLSD 176

Query: 165 KLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYY 224
           KL++TA+ PSKAPPRADVV SL+NGI VNL+GMGAAILGMQATVGLLVAKALT+SA PYY
Sbjct: 177 KLQRTANQPSKAPPRADVVNSLRNGIVVNLLGMGAAILGMQATVGLLVAKALTSSAIPYY 236

Query: 225 QGITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVPRVA 280
           Q  +PG SPVLALDVFLVQASANTILSHFLGL+FSLELLRSVTLP ++SIP+PR+A
Sbjct: 237 QAASPGNSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPATDSIPIPRMA 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108735959|gb|ABG00264.1| Tic21 [Pisum sativum]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 201/282 (71%), Positives = 225/282 (79%), Gaps = 11/282 (3%)

Query: 1   MQTLLLPA---GRSGISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSLKTLQS----SS 53
           MQTLL PA   GR    P + ++  + R P   +  N    SS SLP   T  S    S 
Sbjct: 1   MQTLLPPASCAGRLTAVPLSVSSISVPRLPRRVLIPN----SSPSLPLKLTASSPFFSSY 56

Query: 54  LANRGSKHCFPILASSQIPPTFTSQNDESEKAKLAQVSKRLENTARHFKRFGSFGFWGQL 113
           +++R     F + AS+Q  P FT  N+ESEKAKL QVSKRLE TARHFKR GS GFWGQL
Sbjct: 57  ISHRPWNLPFTVTASTQPSPPFTPSNEESEKAKLDQVSKRLEKTARHFKRLGSLGFWGQL 116

Query: 114 VCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDP 173
           VCT+VSAVILSFS+I+TGKVTSP TFY TAGGIAAAFI VFWSFGYIRLSE+LRKTA+DP
Sbjct: 117 VCTIVSAVILSFSVIVTGKVTSPATFYATAGGIAAAFIPVFWSFGYIRLSERLRKTANDP 176

Query: 174 SKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQGITPGYSP 233
           +KAPPR+DVVKSL+NGI +NL+GMGAAILGMQATVG LVAKALT+SANPYYQGI PG SP
Sbjct: 177 TKAPPRSDVVKSLQNGIVLNLLGMGAAILGMQATVGFLVAKALTSSANPYYQGIAPGSSP 236

Query: 234 VLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIP 275
           VLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSE++P
Sbjct: 237 VLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSEALP 278

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490728|gb|AFK33430.1| unknown [Medicago truncatula]

 Score =  350 bits (897), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 200/290 (68%), Positives = 226/290 (77%), Gaps = 17/290 (5%)

Query: 1   MQTLLLPAGRSG---ISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSL-------KTLQ 50
           MQTLL PA  SG    +P + +A  + R P        + L  NS PSL           
Sbjct: 1   MQTLLSPAPCSGKFTAAPLSISAISVPRLPR-------TILKQNSTPSLPLKLNSSSPSF 53

Query: 51  SSSLANRGSKHCFPILASSQIPPTFTSQNDESEKAKLAQVSKRLENTARHFKRFGSFGFW 110
           SS +++R  K  F   ASSQ  P F   N+ESEKAKL QV+KRLE TARHFKR GS GFW
Sbjct: 54  SSFISHRSWKLPFTATASSQSSPAFAPSNEESEKAKLDQVAKRLEKTARHFKRLGSLGFW 113

Query: 111 GQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTA 170
           GQLVCT+VSAVILSFS+++TGKVTSP TFY TAGGI AAFISVFWSFGYIRLSE+LR+TA
Sbjct: 114 GQLVCTIVSAVILSFSVVVTGKVTSPATFYATAGGITAAFISVFWSFGYIRLSERLRRTA 173

Query: 171 SDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQGITPG 230
           +DP+KAPPR+DVVKSL+NGI +NL+GMG+AILGMQATVG LVAKALTTSANPYYQGI PG
Sbjct: 174 NDPTKAPPRSDVVKSLQNGIALNLLGMGSAILGMQATVGFLVAKALTTSANPYYQGIAPG 233

Query: 231 YSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVPRVA 280
            SPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSE++P  + A
Sbjct: 234 SSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSEALPFLKFA 283

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
TAIR|locus:2049113	296	TIC21 "translocon at inner mem	1.0	0.945	0.567	1.1e-73

TAIR|locus:2049113 TIC21 "translocon at inner membrane of chloroplasts 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 168/296 (56%), Positives = 205/296 (69%)

Query:     1 MQTLLLP-AGRSGISPTAAAAS--HLRRAPSLNIGT----NVSFLSSNSLPSLKTLQSS- 52
             MQ+LLLP A  SG+S  A      H     SL+  +    N   L+     ++ + QS  
Sbjct:     1 MQSLLLPPASSSGVSAVALRPGFQHSFNHQSLSTRSLPLFNPLLLAPKKKTTISSYQSPP 60

Query:    53 SLANRG-----SKHCF-PILASSQIP--PTFTSQNDESEKAKLAQVSKRLENTARHFKRF 104
             SL+  G     SK  F P   +   P  P+    ++E +KAKLAQV+KRLE T+R+FKR 
Sbjct:    61 SLSVYGFQIGGSKPSFTPSTVAFSYPTSPSSVPGDNEVDKAKLAQVAKRLEKTSRYFKRL 120

Query:   105 GSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSE 164
             GS GFWGQLV TVV+AVILSFSI++TGK TSP TFY TA GIAAAF+SVFWSFGYIRLSE
Sbjct:   121 GSIGFWGQLVSTVVAAVILSFSIVVTGKPTSPATFYATASGIAAAFVSVFWSFGYIRLSE 180

Query:   165 KLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYY 224
             +LR+T+ DP+KAPPRADVVK L++GI VN++GMG+A+LGMQATVG LVAKALTTSANP+Y
Sbjct:   181 RLRRTSIDPAKAPPRADVVKGLRSGIMVNILGMGSALLGMQATVGFLVAKALTTSANPFY 240

Query:   225 QGITPGYSPVLALDVFLVQASANTIXXXXXXXXXXXXXXXXXXXPPSESIPVPRVA 280
             QG++ GYSPVLALDVFLVQASANT+                   P SES+ VP+VA
Sbjct:   241 QGVSQGYSPVLALDVFLVQASANTLLSHFLGLVCSLELLRSVTVPNSESVVVPKVA 296


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.130   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      280       261   0.00090  114 3  11 22  0.47    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  159 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.87u 0.07s 23.94t   Elapsed:  00:00:02
  Total cpu time:  23.87u 0.07s 23.94t   Elapsed:  00:00:02
  Start:  Fri May 10 10:25:22 2013   End:  Fri May 10 10:25:24 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045037 "protein import into chloroplast stroma" evidence=IMP

GO:0005381 "iron ion transmembrane transporter activity" evidence=IGI

GO:0006875 "cellular metal ion homeostasis" evidence=IMP

GO:0015088 "copper uptake transmembrane transporter activity" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SHU7	TIC21_ARATH	No assigned EC number	0.6105	0.975	0.9222	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	280
pfam12263	183	pfam12263, DUF3611, Protein of unknown function (D	2e-64

>gnl|CDD|221498 pfam12263, DUF3611, Protein of unknown function (DUF3611)

 Score =  199 bits (509), Expect = 2e-64
 Identities = 84/188 (44%), Positives = 113/188 (60%), Gaps = 12/188 (6%)

Query: 88  AQVSKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSP-------TTFY 140
             VS  LE  AR  +  G  GFW QLV  VVSA+IL F+++ +G V SP          +
Sbjct: 1   PPVSPALERLARGLRLLGWIGFWIQLVLGVVSALILLFAVLFSGLVRSPDRNLGLGIGLF 60

Query: 141 CTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAA 200
            T  G+ A   S+F++F Y RL  +LR    DP+K P RAD V+ L+ G+ +NL+GM  A
Sbjct: 61  LTIIGLIALGFSIFFAFRYTRLGRRLRN--PDPAKRPSRADTVRLLRLGLIINLLGMFLA 118

Query: 201 ILGMQATVGLLVAKALTTSANPYYQGITPGYSPVLALDVFLVQASANTILSHFLGLLFSL 260
           ++G QATVG+L+AKAL+    P    +      + ALDVFLV A+ NTIL+HF+GL+ SL
Sbjct: 119 LIGAQATVGILLAKALSQ---PPGIAVYDPNKAITALDVFLVLANTNTILAHFIGLIVSL 175

Query: 261 ELLRSVTL 268
            LLR V  
Sbjct: 176 WLLRRVYR 183

This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
PF12263	183	DUF3611: Protein of unknown function (DUF3611); In	100.0
PF04341	91	DUF485: Protein of unknown function, DUF485; Inter	88.42
PF11239	82	DUF3040: Protein of unknown function (DUF3040); In	87.51
PF01618	139	MotA_ExbB: MotA/TolQ/ExbB proton channel family Mo	87.24

>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes

Probab=100.00  E-value=2.3e-61  Score=424.41  Aligned_cols=175  Identities=51%  Similarity=0.811  Sum_probs=161.8

Q ss_pred             HhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch-------hHHHHHHHHHHHHHHHHHHHHHHH
Q 023598           89 QVSKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPT-------TFYCTAGGIAAAFISVFWSFGYIR  161 (280)
Q Consensus        89 ~v~~~l~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp~-------~~~~t~~GLv~L~~SifwsfrYtR  161 (280)
                      ++++++||+|++|||+||+|||+|++||+||+++|+|+++++++.+++.       .+|++.+|++++++|+||+|||+|
T Consensus         2 ~~~~~~~~~a~~lr~~Gwi~FW~QlvLgvVs~~iL~F~~~~~~~~~~~~~~~G~~~gl~~a~~gl~~l~~si~~~fry~R   81 (183)
T PF12263_consen    2 SVPPALQRIARALRRLGWIGFWIQLVLGVVSAVILLFANLFSGRATSPNRNPGLGIGLFLAICGLVALFFSIFWSFRYTR   81 (183)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999987666655443       588888899999999999999999


Q ss_pred             HHHHHhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCCcchHHHHH
Q 023598          162 LSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQGITPGYSPVLALDVFL  241 (280)
Q Consensus       162 LarrLr~~~~~p~~rPskadv~r~Lr~GL~vNLvGmlltllGaqA~VG~LvaKaLsq~~~p~~qg~t~~~~~I~aLDVfv  241 (280)
                      +||||++  +||++||+|+|+.|.||+|+++|++||++|++|+|++||+|++|+++|++++   +.++++++|+++|||+
T Consensus        82 lar~L~~--~~~~~~P~k~~~~~~l~~Gl~~nl~Gmllt~lG~~a~vG~L~ak~lsqp~g~---~~~~~~~~i~~lDvf~  156 (183)
T PF12263_consen   82 LARRLRS--PNPAKRPSKADVVRLLRIGLIINLVGMLLTLLGAQATVGTLVAKALSQPQGA---AIYNPSQPIRALDVFV  156 (183)
T ss_pred             HHHHhcc--cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc---cccCCCCccchHHHHH
Confidence            9999994  6899999999999999999999999999999999999999999999987655   3446668999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 023598          242 VQASANTILSHFLGLLFSLELLRSVTL  268 (280)
Q Consensus       242 VqANtNtI~AHFvGLv~SLWLL~rv~~  268 (280)
                      ||||+|+|+|||+|+++|||||+||||
T Consensus       157 vqAn~n~i~AHfvGlv~sLwLL~rv~r  183 (183)
T PF12263_consen  157 VQANTNTILAHFVGLVFSLWLLRRVTR  183 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999986

Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.

>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins

Probab=88.42  E-value=5.6  Score=31.48  Aligned_cols=74  Identities=14%  Similarity=0.087  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598           91 SKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSII--ITGKVTSPT-TFYCTAGGIAAAFISVFWSFGYIRLSEKL  166 (280)
Q Consensus        91 ~~~l~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~--~~g~~~sp~-~~~~t~~GLv~L~~SifwsfrYtRLarrL  166 (280)
                      .++.+++.+.=||++|.-+.+-+++=.  +.+++.++.  +-+..-.++ .-+....|+....++.-.++.|+|.+++-
T Consensus         4 ~p~f~~L~r~r~r~~~~l~~i~l~~y~--~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l~~~Yv~~An~~   80 (91)
T PF04341_consen    4 SPEFQELVRRRRRLAWPLSAIFLVLYF--GFVLLSAFAPELMATPVFPGSLTLGIVLGLGQIVFAWVLTWLYVRRANRE   80 (91)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCHHHHcCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            467899999999999987776554332  233333331  112222212 33444457777788999999999999873

>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed

Probab=87.51  E-value=4.1  Score=31.52  Aligned_cols=70  Identities=17%  Similarity=0.185  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHhhHHHH----HHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q 023598           80 DESEKAKLAQVSKRLE----NTARHFKRF----GSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFI  151 (280)
Q Consensus        80 ~~~~~~~~~~v~~~l~----riA~~lRr~----GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp~~~~~t~~GLv~L~~  151 (280)
                      .|.||..|+|+.++|.    +.++.++..    .+-.-++..++.++.+++++..-++.+..      +....|+++.+.
T Consensus         4 Se~E~r~L~eiEr~L~~~DP~fa~~l~~~~~~~~~~r~~~~~~~~~v~gl~llv~G~~~~~~------~~~v~G~~v~~~   77 (82)
T PF11239_consen    4 SEHEQRRLEEIERQLRADDPRFAARLRSGRPRRPSRRRRVLGVLLVVVGLALLVAGVVLSQP------PLGVAGFVVMVA   77 (82)
T ss_pred             CHHHHHHHHHHHHHHHhcCcHHHHHhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHH
Confidence            4778889999999884    477777762    22223344455555555444443212221      244457777777


Q ss_pred             HHHH
Q 023598          152 SVFW  155 (280)
Q Consensus       152 Sifw  155 (280)
                      ..+|
T Consensus        78 ~~~~   81 (82)
T PF11239_consen   78 GAVW   81 (82)
T ss_pred             HHHh
Confidence            7776

>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane

Probab=87.24  E-value=15  Score=30.64  Aligned_cols=78  Identities=19%  Similarity=0.193  Sum_probs=46.7

Q ss_pred             HHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc--------hhHHHHHHHHHHHHHHHHHHHHH
Q 023598           88 AQVSKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSP--------TTFYCTAGGIAAAFISVFWSFGY  159 (280)
Q Consensus        88 ~~v~~~l~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp--------~~~~~t~~GLv~L~~SifwsfrY  159 (280)
                      .+.-+++++--..++.+++++==+=+ ||.|-+++..|..+.......+        ..+++|+.|+++.....++...+
T Consensus        45 ~~~~~~~~~~~~~l~~i~~~aP~lGL-lGTv~Gmi~~f~~l~~~~~~~~~~l~~gi~~Al~tT~~GL~vai~~~~~~~~l  123 (139)
T PF01618_consen   45 EREEERLERNLSILRTIASIAPLLGL-LGTVIGMIEAFQALAETGSGDPSQLAGGISVALITTAYGLVVAIPALPFYNYL  123 (139)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445556556666666666654444 7788888888887532222221        23889999988876666554444


Q ss_pred             HHHHHHH
Q 023598          160 IRLSEKL  166 (280)
Q Consensus       160 tRLarrL  166 (280)
                      .|-.+++
T Consensus       124 ~~~~~~~  130 (139)
T PF01618_consen  124 KRRVERI  130 (139)
T ss_pred             HHHHHHH
Confidence            4444444

These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	280
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 52/314 (16%), Positives = 88/314 (28%), Gaps = 97/314 (30%)

Query: 6   LPAGRSGISPTAAA--ASHLRRAPSLNIGTNVSFLSSNSLPSLKTLQSSSLANRGS---K 60
           LP      +P   +  A  +R   +    T  ++   N    L T+  SSL        +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLA----TWDNWKHVN-CDKLTTIIESSLNVLEPAEYR 372

Query: 61  HCFPILA----SSQIPPT--------FTSQNDESEKAKLAQVSKRLENTARHFKRFGSFG 108
             F  L+    S+ IP              +      KL      L    +  K   +  
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL--HKYSL--VEKQPKES-TIS 427

Query: 109 FWG---QLVCTVVSAVILSFSII----ITGKV----TSPTT----FY---------CTAG 144
                 +L   + +   L  SI+    I          P      FY             
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 145 GIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGM 204
                F  VF  F ++   +K+R  ++  + +    + ++ LK                 
Sbjct: 488 ERMTLFRMVFLDFRFLE--QKIRHDSTAWNASGSILNTLQQLKF---------------- 529

Query: 205 QATVGLLVAKALTTSANPYYQGIT---PGYSPVL-ALDVFLVQASANTILSHFLGLLFSL 260
                             Y   I    P Y  ++ A+  FL +   N I S +       
Sbjct: 530 ------------------YKPYICDNDPKYERLVNAILDFLPKIEENLICSKY------T 565

Query: 261 ELLRSVTLPPSESI 274
           +LLR   +   E+I
Sbjct: 566 DLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 16/140 (11%), Positives = 34/140 (24%), Gaps = 37/140 (26%)

Query: 156 SFGYIRLSEKLRKTASDPSKAPP----RADVVKSLKNGI-------GVNLVGMGAAILGM 204
           S       E+  +  +D          R      L+  +        V + G+     G 
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL----GS 161

Query: 205 QATVGLLVAKAL----TTSANP---YYQGITPGYSPVLALDVFLVQASANTILSHFLGLL 257
             T   +                  ++  +                 S  T+L     LL
Sbjct: 162 GKTW--VALDVCLSYKVQCKMDFKIFW--LNLKN-----------CNSPETVLEMLQKLL 206

Query: 258 FSLELLRSVTLPPSESIPVP 277
           + ++   +     S +I + 
Sbjct: 207 YQIDPNWTSRSDHSSNIKLR 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00