Citrus Sinensis ID: 023600

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MLPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTSFGPVRR
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccccccccccHHHHcHccccHHccccccccccccEEEHHHHcccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHcccEEEccccccccccccc
Coil and Loop (DISEMBL)
MLPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAasvepaprptkqpvvsldkmfwskpASLAlaldsplrvdepkyeGIKRFILKLMLFYSKqsksirganVIYKRVVsqvdkpaiydVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVafdaallpeakqDELQNVIWRNifsddgsskpddAAVRAVQAMTRYVRREVSclsltdkeamfsgnfmftplentsfgpvrr
Flexible Loop (DISEMBL)
MLPRWCRAVRslnsitqrndFHAISRQSYAMATAAAasvepaprpTKQPVVSLDKMFWSKPASLalaldsplrvdePKYEGIKRFILKLMLFYSKQsksirganviykrvvsqvdkPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNifsddgsskpdDAAVRAVQAMTRYVRREVSCLSLTDKeamfsgnfmftplentsfgpvrr
Low Complexity Region (SEG)
MLPRWCRAVRSLNSITQRNDFHAISRQSYamataaaasvepaprpTKQPVVSLDKMFWSKpaslalaldsplRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRlkeegkegvelgQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTSFGPVRR
Disordered region (IsUnstruct)
****WCRAVRSLNSITQRNDFHAI**************************VSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFS**********AVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTP***********
Disordered Region (DISOPRED)
********************************************************************************GIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSK*******SKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLE*********
Disordered Region (DISEMBL)
MLPRWCRAVRSLNSITQRNDFHAISRQSY*******************PVVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTSFGPVRR
Disordered Region (DISPRO)
*LPRWCRAVRSLNSI**RNDFH**SRQSYAMATAA***********KQPVVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLE*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTSFGPVRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
Q9W6I0	200	Ubiquinol-cytochrome c re	N/A	no	0.560	0.785	0.275	9e-13
Q9NVA1	299	Ubiquinol-cytochrome c re	yes	no	0.692	0.648	0.277	2e-11
Q9CWU6	295	Ubiquinol-cytochrome c re	yes	no	0.610	0.579	0.285	3e-11
P21560	335	Protein CBP3, mitochondri	yes	no	0.510	0.426	0.269	7e-06
Q9USK6	283	CBP3-like protein OS=Schi	yes	no	0.464	0.459	0.270	0.0001

>sp|Q9W6I0|UQCC_XENLA Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog OS=Xenopus laevis GN=uqcc PE=2 SV=1

 Score = 74.3 bits (181), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 10/167 (5%)

Query: 106 IYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIY 165
           +Y   V ++D    ++  +L  T    F +  LH+W CL R+K+EG+ G  + +Y+    
Sbjct: 21  MYTCCVERIDYDEFFEKCSLPDTLNSWFLVTQLHVWMCLVRMKQEGRAGKYMCRYIVHSM 80

Query: 166 NHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSD 224
             DVE R    G++ + L   M+ + +IFY  I  +D  ++ + +   L   +WRN+   
Sbjct: 81  WEDVEQRGKVMGIDSVTLKNSMRSMTEIFYAAIFGYDEGIISDDRI--LAAALWRNLL-- 136

Query: 225 DGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKE-AMFSGNFMFTPL 270
             + + DD   R ++ +  YVR++V  L   D E  + +G  ++ PL
Sbjct: 137 --NKQCDDP--RKLELLVEYVRKQVQFLDTLDGEDLLLTGEVVWRPL 179

Xenopus laevis (taxid: 8355)

>sp|Q9NVA1|UQCC_HUMAN Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog OS=Homo sapiens GN=UQCC PE=1 SV=3

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 22/216 (10%)

Query: 64  LALALDSPLRVDEPKYEGIKRF--ILKLMLF-----YSKQSKSIRGANVIYKRVVSQVDK 116
           L+   DSP    +P  E +  F  I++ M F     YSK    I  A  +Y   V + D 
Sbjct: 76  LSTTKDSP----QPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKI-AALRMYTSCVEKTDF 130

Query: 117 PAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKA 176
              +    +  TF   F + +LH+W CL R+K+EG+ G  + + +      DV+ R    
Sbjct: 131 EEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMWEDVQQRGRVM 190

Query: 177 GVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 235
           GVN  +L K M  +   FY  I+ +D  +L  +    L   +WR  F    + K +D   
Sbjct: 191 GVNPYILKKNMILMTNHFYAAILGYDEGIL--SDDHGLAAALWRTFF----NRKCEDP-- 242

Query: 236 RAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFTPL 270
           R ++ +  YVR+++  L S+  ++ + +G   + PL
Sbjct: 243 RHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPL 278

Homo sapiens (taxid: 9606)

>sp|Q9CWU6|UQCC_MOUSE Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog OS=Mus musculus GN=Uqcc PE=2 SV=1

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 91  LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEE 150
           L YSK    I  A  +Y   V + D    +    +  TF   F + +LH+W CL R+K+E
Sbjct: 102 LKYSKWKIKI-AALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 160

Query: 151 GKEGVELGQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
           G+ G  + + +      DVE R    GVN  +L K M  +   FY  I+ +D  +L +  
Sbjct: 161 GRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAILGYDEGILSD-- 218

Query: 210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 268
              L   +WR  F    + K +D   R ++ +  YVR+++  L S+  ++ + +G   + 
Sbjct: 219 DHGLAAALWRTFF----NQKCEDP--RQLELLVEYVRKQMQYLDSMNGEDLLLTGEVRWR 272

Query: 269 PL 270
           PL
Sbjct: 273 PL 274

Mus musculus (taxid: 10090)

>sp|P21560|CBP3_YEAST Protein CBP3, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CBP3 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 13/156 (8%)

Query: 119 IYDVFNLEKTFRMTFSLLVLHMWFCLRRLKE-EGKEGVELGQYLYEIYNHDVEMRV---S 174
            Y+   L +TF   F + VLH W    R++    K G    Q L +    D+E+R+    
Sbjct: 143 FYEDLKLPRTFSQWFQITVLHEWILFVRMRAMPFKYGRNYQQKLVDRTFSDIELRLFEEM 202

Query: 175 KAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 234
           K     +  +++K+      G I A+D     +     L   +WRN+F   G  K  D  
Sbjct: 203 KVNSGRIADQYLKDFNTQLRGAIFAYDEGFATD--DGTLATAVWRNLF---GGRKNIDMV 257

Query: 235 VRAVQAMTRYVRREVSCLS-LTDKEAMFSGNFMFTP 269
              ++++ RY+  ++  LS L+D+E   +G F F P
Sbjct: 258 --HLESVVRYIYSQLYVLSRLSDRE-FATGKFKFVP 290

Chaperone required for the assembly of ubiquinol-cytochrome c reductase of the mitochondrial respiratory chain.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9USK6|CBP3_SCHPO CBP3-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cbp3 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 14/144 (9%)

Query: 120 YDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGK-EGVELGQYLYEIYNHDVEMRVSK--- 175
           Y    +  TF+  F +  LH+W    R++   K E V   Q L   +  D+E+R+ K   
Sbjct: 127 YQKCEIPMTFQSWFQITQLHLWILHTRIRGLPKNEKVAFSQALTTRFFEDMELRIHKDYR 186

Query: 176 AGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 235
              N +   ++K+L +   G I  +D  +L       L   +WRN+F      +PD   V
Sbjct: 187 INSNRISGMYLKDLFQQQTGAIFGYDQGML--GSDAVLATSVWRNLF----VGRPDVDLV 240

Query: 236 RAVQAMTRYVRREV---SCLSLTD 256
             ++ + +++R  V   SCLS  D
Sbjct: 241 -ILETIVKFIRLNVYRLSCLSTDD 263

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
118489171	291	unknown [Populus trichocarpa x Populus d	0.975	0.938	0.710	1e-109
359490078	285	PREDICTED: ubiquinol-cytochrome c reduct	0.992	0.975	0.694	1e-107
297745034	354	unnamed protein product [Vitis vinifera]	0.992	0.785	0.694	1e-107
30696021	281	ubiquinol-cytochrome C chaperone family	0.960	0.957	0.672	1e-106
110737777	281	hypothetical protein [Arabidopsis thalia	0.960	0.957	0.669	1e-106
224112809	224	predicted protein [Populus trichocarpa]	0.782	0.977	0.817	1e-106
449461829	290	PREDICTED: ubiquinol-cytochrome c reduct	0.971	0.937	0.701	1e-105
297795925	281	ubiquinol-cytochrome C chaperone family	0.967	0.964	0.688	1e-105
357445931	277	Ubiquinol-cytochrome c reductase complex	0.95	0.960	0.688	1e-103
255641101	255	unknown [Glycine max]	0.864	0.949	0.710	2e-97

>gi|118489171|gb|ABK96392.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/287 (71%), Positives = 233/287 (81%), Gaps = 14/287 (4%)

Query: 1   MLPRWCRAVRSLNSITQRND-------FHAISRQSYAMATAAAASVEPAPRPTKQ----- 48
           ML R  RA  S      RN+       F  IS QSYA A  AAA    +P  + Q     
Sbjct: 1   MLARCSRAAASHFFHQLRNNNNSKDAAFKFISHQSYAKAATAAAMAA-SPILSSQKVFPS 59

Query: 49  -PVVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIY 107
             VV+LDKMF SKP SLALA DSPLR++EP+YEGI+RF+LKL+LFYSKQSKSIRGANV+Y
Sbjct: 60  NSVVNLDKMFRSKPCSLALAPDSPLRIEEPEYEGIRRFVLKLLLFYSKQSKSIRGANVVY 119

Query: 108 KRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNH 167
           +R+VSQVD+PAIY+VFNLEKTF+MTFSLLVLHMW CLRRLK+EG+EGVE GQY+YEIYNH
Sbjct: 120 RRIVSQVDRPAIYEVFNLEKTFKMTFSLLVLHMWLCLRRLKQEGREGVEFGQYIYEIYNH 179

Query: 168 DVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGS 227
           DVE+RVSKAGVNLLL+KWMKELEKI YGNIVA+DAA+LPEAK DEL  VIWRN+FSDDG+
Sbjct: 180 DVELRVSKAGVNLLLTKWMKELEKILYGNIVAYDAAMLPEAKPDELPKVIWRNVFSDDGT 239

Query: 228 SKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTS 274
           ++PDD A +A+QAM RYVR E SCLSLTDKEAMFSGNFMFT LEN S
Sbjct: 240 TEPDDTASQAIQAMARYVRHEASCLSLTDKEAMFSGNFMFTSLENLS 286

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490078|ref|XP_002264821.2| PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Vitis vinifera]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/285 (69%), Positives = 231/285 (81%), Gaps = 7/285 (2%)

Query: 1   MLPRWCRA------VRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVVSLD 54
           MLPRW RA      + S N++  R DF  ++ +SYA   AAAA        +++P V  +
Sbjct: 1   MLPRWSRAAIRLYKLGSQNNMELRKDFCFVASRSYA-KVAAAADDSTEKNFSRKPEVYFN 59

Query: 55  KMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQV 114
           KMFWSKP SLALA DSPLRV+EPKYEGI+  I K++LFYSKQSKSIRGANV+Y+R+ SQV
Sbjct: 60  KMFWSKPCSLALAQDSPLRVEEPKYEGIRHIIFKMLLFYSKQSKSIRGANVVYRRIASQV 119

Query: 115 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVS 174
           DKPAIY+ FNLEKTF+ TFSLL+LHMW CLRRLKE+GKEGVE GQYLYEIYNHDVE+RVS
Sbjct: 120 DKPAIYNAFNLEKTFKTTFSLLILHMWLCLRRLKEDGKEGVEFGQYLYEIYNHDVELRVS 179

Query: 175 KAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 234
           KAGVNLLL++WMK+LEKIFYGNIVA+DAA+LPEA+ DEL NVIW+NIFSDDG SKP+DAA
Sbjct: 180 KAGVNLLLTRWMKDLEKIFYGNIVAYDAAMLPEARPDELPNVIWKNIFSDDGLSKPNDAA 239

Query: 235 VRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTSFGPVR 279
             AVQAM RY RRE SCLSLTDKE++FSGNF F+ LEN     VR
Sbjct: 240 AGAVQAMARYARRECSCLSLTDKESIFSGNFTFSSLENPKSDSVR 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745034|emb|CBI38626.3| unnamed protein product [Vitis vinifera]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/285 (69%), Positives = 231/285 (81%), Gaps = 7/285 (2%)

Query: 1   MLPRWCRA------VRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVVSLD 54
           MLPRW RA      + S N++  R DF  ++ +SYA   AAAA        +++P V  +
Sbjct: 70  MLPRWSRAAIRLYKLGSQNNMELRKDFCFVASRSYA-KVAAAADDSTEKNFSRKPEVYFN 128

Query: 55  KMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQV 114
           KMFWSKP SLALA DSPLRV+EPKYEGI+  I K++LFYSKQSKSIRGANV+Y+R+ SQV
Sbjct: 129 KMFWSKPCSLALAQDSPLRVEEPKYEGIRHIIFKMLLFYSKQSKSIRGANVVYRRIASQV 188

Query: 115 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVS 174
           DKPAIY+ FNLEKTF+ TFSLL+LHMW CLRRLKE+GKEGVE GQYLYEIYNHDVE+RVS
Sbjct: 189 DKPAIYNAFNLEKTFKTTFSLLILHMWLCLRRLKEDGKEGVEFGQYLYEIYNHDVELRVS 248

Query: 175 KAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 234
           KAGVNLLL++WMK+LEKIFYGNIVA+DAA+LPEA+ DEL NVIW+NIFSDDG SKP+DAA
Sbjct: 249 KAGVNLLLTRWMKDLEKIFYGNIVAYDAAMLPEARPDELPNVIWKNIFSDDGLSKPNDAA 308

Query: 235 VRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTSFGPVR 279
             AVQAM RY RRE SCLSLTDKE++FSGNF F+ LEN     VR
Sbjct: 309 AGAVQAMARYARRECSCLSLTDKESIFSGNFTFSSLENPKSDSVR 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696021|ref|NP_199935.2| ubiquinol-cytochrome C chaperone family protein [Arabidopsis thaliana] gi|63025180|gb|AAY27063.1| At5g51220 [Arabidopsis thaliana] gi|87116650|gb|ABD19689.1| At5g51220 [Arabidopsis thaliana] gi|332008671|gb|AED96054.1| ubiquinol-cytochrome C chaperone family protein [Arabidopsis thaliana]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/281 (67%), Positives = 228/281 (81%), Gaps = 12/281 (4%)

Query: 1   MLPRWCRAV------RSLNSITQRNDFHAISRQSYAMATAAAASVEPAPR---PTKQPVV 51
           MLPR  R V      RSL +     +    SR  Y  AT A A+ +P  +   P+K P+ 
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSR--YGYATVAPAAADPPSQKDFPSKSPI- 57

Query: 52  SLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVV 111
           +LDKMFWSKP SLAL  DSPLR+DEP Y GI+RFILK+M+FYSKQS SIRGANVIYKR++
Sbjct: 58  NLDKMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRII 117

Query: 112 SQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEM 171
           +QVDKPAIYDVFNLEKTF++T+SLLVLHMW  LRRLKE+G+EGV+LGQY+YEIYNHDVE+
Sbjct: 118 AQVDKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVEL 177

Query: 172 RVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPD 231
           RVSKAGVNLLL+KWMKELE+IFYGN+VA+DAALLPEAK ++LQ  +WRN+FSDDG++ PD
Sbjct: 178 RVSKAGVNLLLAKWMKELERIFYGNVVAYDAALLPEAKPNDLQIKLWRNVFSDDGTTTPD 237

Query: 232 DAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLEN 272
           +  ++  QAM RYVRRE+  LSLTDKE++FSGNF FTPLEN
Sbjct: 238 NTDLKTAQAMARYVRRELGSLSLTDKESIFSGNFSFTPLEN 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737777|dbj|BAF00827.1| hypothetical protein [Arabidopsis thaliana]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/281 (66%), Positives = 227/281 (80%), Gaps = 12/281 (4%)

Query: 1   MLPRWCRAV------RSLNSITQRNDFHAISRQSYAMATAAAASVEPAPR---PTKQPVV 51
           MLPR  R V      RSL +     +    SR  Y  AT A A+ +P  +   P+K P+ 
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSR--YGYATVAPAAADPPSQKDFPSKSPI- 57

Query: 52  SLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVV 111
           +LDKMFWSKP SL L  DSPLR+DEP Y GI+RFILK+M+FYSKQS SIRGANVIYKR++
Sbjct: 58  NLDKMFWSKPCSLVLPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRII 117

Query: 112 SQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEM 171
           +QVDKPAIYDVFNLEKTF++T+SLLVLHMW  LRRLKE+G+EGV+LGQY+YEIYNHDVE+
Sbjct: 118 AQVDKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVEL 177

Query: 172 RVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPD 231
           RVSKAGVNLLL+KWMKELE+IFYGN+VA+DAALLPEAK ++LQ  +WRN+FSDDG++ PD
Sbjct: 178 RVSKAGVNLLLAKWMKELERIFYGNVVAYDAALLPEAKPNDLQIKLWRNVFSDDGTTTPD 237

Query: 232 DAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLEN 272
           +  ++  QAM RYVRRE+  LSLTDKE++FSGNF FTPLEN
Sbjct: 238 NTDLKTAQAMARYVRRELGSLSLTDKESIFSGNFSFTPLEN 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112809|ref|XP_002332696.1| predicted protein [Populus trichocarpa] gi|222832950|gb|EEE71427.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/219 (81%), Positives = 203/219 (92%)

Query: 56  MFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVD 115
           MF SKP SLALA DSPLR++EP+YEGI+RF+LKL+LFYSKQSKSIRGANV+Y+R+VSQVD
Sbjct: 1   MFRSKPCSLALAPDSPLRIEEPEYEGIRRFVLKLLLFYSKQSKSIRGANVVYRRIVSQVD 60

Query: 116 KPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSK 175
           +PAIY+VFNLEKTF+MTFSLLVLHMW CLRRLK+EGKEGVE GQY+YEIYNHDVE+RVSK
Sbjct: 61  RPAIYEVFNLEKTFKMTFSLLVLHMWLCLRRLKQEGKEGVEFGQYIYEIYNHDVELRVSK 120

Query: 176 AGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 235
           AGVNLLL+KWMKELEKI YGNIVA+DAA+LPEAK DEL  VIWRN+FSDDG+++PDD A 
Sbjct: 121 AGVNLLLTKWMKELEKILYGNIVAYDAAMLPEAKPDELPKVIWRNVFSDDGTTEPDDTAS 180

Query: 236 RAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTS 274
           +A+QAM RYVR E SCLSLTDKEAMFSGNFMFT LEN S
Sbjct: 181 QAIQAMARYVRHEASCLSLTDKEAMFSGNFMFTSLENLS 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461829|ref|XP_004148644.1| PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Cucumis sativus] gi|449516820|ref|XP_004165444.1| PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Cucumis sativus]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/281 (70%), Positives = 229/281 (81%), Gaps = 9/281 (3%)

Query: 1   MLPRWCRAVRSLNSITQRNDF------HAISRQSYA-MATAAAASVEPAPRP-TKQPVVS 52
           ML +W R  R L+ I   ++F      H    +SYA +A AAA ++  + +  +   VV 
Sbjct: 1   MLAKWSRVTRHLSRIGLESNFKFSTDLHVCPHRSYAKVAAAAAPNIGHSEKGVSGGHVVH 60

Query: 53  LDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVS 112
           LDKMF SKP SLAL  DSPLR+DEP+YEGIKR  L++MLFYSKQSK IR ANVIY+RVVS
Sbjct: 61  LDKMFLSKPCSLALPKDSPLRMDEPQYEGIKRLFLRMMLFYSKQSKHIRAANVIYQRVVS 120

Query: 113 QVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMR 172
           QVDKPAIYDVFNLEKTF+ TFSLLVLHMW CLRRLKEEGKEGVE GQY+YE+YNHDVE+R
Sbjct: 121 QVDKPAIYDVFNLEKTFKTTFSLLVLHMWLCLRRLKEEGKEGVERGQYVYELYNHDVELR 180

Query: 173 VSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDD 232
           VSKAGVNLLL +WMK+LEKIFYGNIVA+D+A+LPEA +DEL NVIW+NI+SDDGSS P+ 
Sbjct: 181 VSKAGVNLLLIRWMKDLEKIFYGNIVAYDSAILPEAGKDELPNVIWKNIYSDDGSSMPNG 240

Query: 233 A-AVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLEN 272
           A A+RAVQAM RY RREVSCLSLTDK+A+FSGNFMFT LE 
Sbjct: 241 APALRAVQAMARYTRREVSCLSLTDKDAIFSGNFMFTSLET 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795925|ref|XP_002865847.1| ubiquinol-cytochrome C chaperone family protein [Arabidopsis lyrata subsp. lyrata] gi|297311682|gb|EFH42106.1| ubiquinol-cytochrome C chaperone family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/279 (68%), Positives = 225/279 (80%), Gaps = 8/279 (2%)

Query: 1   MLPRWCRAV------RSLNSITQRNDFHAISRQSYAMATAAAASVEPAPR-PTKQPVVSL 53
           MLPR  R V      RSL +     +    SR  YA    AAA   P    P+K P+ +L
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSRYGYATVAPAAADPPPKKDFPSKSPI-NL 59

Query: 54  DKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQ 113
           DKMFWSKP SLAL  DSPLR+DEP Y GI+RFILKLM+FYSKQS SIRGANVIYKR+++Q
Sbjct: 60  DKMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKLMMFYSKQSMSIRGANVIYKRIIAQ 119

Query: 114 VDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRV 173
           VDKPAIYDVFNLEKTF++TFSLLVLHMW  LRRLKE+G+EGV+LGQY+YEIYNHDVE+RV
Sbjct: 120 VDKPAIYDVFNLEKTFKITFSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELRV 179

Query: 174 SKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDA 233
           SKAGVNLLL+KWMKELE+IFYGN+VA+DAALLPEAK +ELQ  +WRN+FSDDG++ PD+ 
Sbjct: 180 SKAGVNLLLAKWMKELERIFYGNVVAYDAALLPEAKPNELQIKLWRNVFSDDGTTTPDNT 239

Query: 234 AVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLEN 272
            ++A QAM RYVRRE+  LSLTD E++FSGNF FTPLEN
Sbjct: 240 DLKAAQAMARYVRRELGSLSLTDNESIFSGNFSFTPLEN 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445931|ref|XP_003593243.1| Ubiquinol-cytochrome c reductase complex chaperone CBP3-like protein [Medicago truncatula] gi|355482291|gb|AES63494.1| Ubiquinol-cytochrome c reductase complex chaperone CBP3-like protein [Medicago truncatula] gi|388491454|gb|AFK33793.1| unknown [Medicago truncatula]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/273 (68%), Positives = 218/273 (79%), Gaps = 7/273 (2%)

Query: 1   MLPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTK-QPVVSLDKMFWS 59
           M   W +A+  L+       F     Q+YA   AA     P     K +P V+LDKMFWS
Sbjct: 1   MFRTWSKAIIPLSK------FRTPMHQTYARVAAAPPPPPPPIIDQKFEPTVNLDKMFWS 54

Query: 60  KPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAI 119
           KP SLAL LDSPLRV+EP Y+G KRFI KLMLFYSKQSKSIRGANV+Y+R+VSQVDKP I
Sbjct: 55  KPCSLALPLDSPLRVNEPDYQGFKRFIFKLMLFYSKQSKSIRGANVVYRRIVSQVDKPLI 114

Query: 120 YDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVN 179
           Y+VFNLEKTF+ TFSLLVLHMWF LRR+K+EG +GVE GQYLYEIYNHDVE+RVSKAGVN
Sbjct: 115 YEVFNLEKTFKTTFSLLVLHMWFYLRRVKQEGNDGVEFGQYLYEIYNHDVELRVSKAGVN 174

Query: 180 LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQ 239
           LLL KWMKELEKIFYGNIVA+DAA+LPEAK  +   VIWRNIFSDDGSS PD+AA ++VQ
Sbjct: 175 LLLIKWMKELEKIFYGNIVAYDAAILPEAKPSDFATVIWRNIFSDDGSSTPDEAAWQSVQ 234

Query: 240 AMTRYVRREVSCLSLTDKEAMFSGNFMFTPLEN 272
           A+ RY RREV+C++LTDKEA+ SGNFMFT L++
Sbjct: 235 ALARYARREVNCMTLTDKEALLSGNFMFTSLKD 267

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641101|gb|ACU20829.1| unknown [Glycine max]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 177/249 (71%), Positives = 205/249 (82%), Gaps = 7/249 (2%)

Query: 1   MLPRWCRAVRSLN---SITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVVSLDKMF 57
           ML RW +AV  ++   S +  N    +SRQ+YA   A A ++E  P    +PVV+LDKMF
Sbjct: 1   MLRRWSKAVTPISKFGSQSHLNFVKDVSRQTYA-GVAPAPTIEDKPH---RPVVNLDKMF 56

Query: 58  WSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKP 117
           WSKP SLAL  DSPLRV+EP Y+GIKR +LKLMLFYSKQSKSIRGANV+Y+R++SQVDKP
Sbjct: 57  WSKPCSLALPRDSPLRVEEPDYQGIKRLMLKLMLFYSKQSKSIRGANVVYQRIISQVDKP 116

Query: 118 AIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAG 177
            IY+VFNLEKTF+ TFSLLVLHMWFCLRRLK+EGKEGVE GQYLYEIYNHDVE+RVSKAG
Sbjct: 117 PIYEVFNLEKTFKTTFSLLVLHMWFCLRRLKQEGKEGVEFGQYLYEIYNHDVELRVSKAG 176

Query: 178 VNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRA 237
           VNLLL+KWMKELEKIFYGNIVA+D A+L EAK  +  NVIWRNIFS+DGSS PD AA ++
Sbjct: 177 VNLLLTKWMKELEKIFYGNIVAYDTAILLEAKPGDFSNVIWRNIFSEDGSSTPDAAASQS 236

Query: 238 VQAMTRYVR 246
           VQAM RY R
Sbjct: 237 VQAMARYAR 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
TAIR|locus:2176227	281	AT5G51220 "AT5G51220" [Arabido	0.971	0.967	0.586	2.2e-82
UNIPROTKB|B7Z314	200	UQCC "Ubiquinol-cytochrome c r	0.610	0.855	0.252	1.6e-08
UNIPROTKB|F6RX10	296	UQCC "Uncharacterized protein"	0.610	0.577	0.258	1.7e-08
MGI|MGI:1929472	295	Uqcc "ubiquinol-cytochrome c r	0.610	0.579	0.258	4e-08
RGD|1585681	299	Uqcc "ubiquinol-cytochrome c r	0.610	0.571	0.252	5.5e-08
UNIPROTKB|F1NGP5	294	UQCC "Uncharacterized protein"	0.610	0.581	0.230	9.4e-08
ZFIN|ZDB-GENE-060929-1034	286	uqcc "ubiquinol-cytochrome c r	0.610	0.597	0.252	1.6e-07
UNIPROTKB|Q9NVA1	299	UQCC "Ubiquinol-cytochrome c r	0.610	0.571	0.252	1.8e-07
CGD|CAL0006092	326	orf19.5515 [Candida albicans (	0.503	0.432	0.256	2.7e-06
SGD|S000006136	335	CBP3 "Mitochondrial protein re	0.507	0.423	0.258	2.5e-05

TAIR|locus:2176227 AT5G51220 "AT5G51220" [Arabidopsis thaliana (taxid:3702)]

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 163/278 (58%), Positives = 196/278 (70%)

Query:     1 MLPRWCRAV------RSLNSITQRNDFHAISRQSYXXXXXXXXXXXXXXXXTKQPVVSLD 54
             MLPR  R V      RSL +     +    SR  Y                  +  ++LD
Sbjct:     1 MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSRYGYATVAPAAADPPSQKDFPSKSPINLD 60

Query:    55 KMFWSKXXXXXXXXXXXXRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQV 114
             KMFWSK            R+DEP Y GI+RFILK+M+FYSKQS SIRGANVIYKR+++QV
Sbjct:    61 KMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRIIAQV 120

Query:   115 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXXXXXXXXXXQYLYEIYNHDVEMRVS 174
             DKPAIYDVFNLEKTF++T+SLLVLHMW  LRR            QY+YEIYNHDVE+RVS
Sbjct:   121 DKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELRVS 180

Query:   175 KAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 234
             KAGVNLLL+KWMKELE+IFYGN+VA+DAALLPEAK ++LQ  +WRN+FSDDG++ PD+  
Sbjct:   181 KAGVNLLLAKWMKELERIFYGNVVAYDAALLPEAKPNDLQIKLWRNVFSDDGTTTPDNTD 240

Query:   235 VRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLEN 272
             ++  QAM RYVRRE+  LSLTDKE++FSGNF FTPLEN
Sbjct:   241 LKTAQAMARYVRRELGSLSLTDKESIFSGNFSFTPLEN 278

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|B7Z314 UQCC "Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 46/182 (25%), Positives = 77/182 (42%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:     7 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 65

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
                     + +      DV+ R    GVN  +L K M  +   FY  I+ +D  +L +  
Sbjct:    66 GRSGKYMCRIIVHFMWEDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGILSD-- 123

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 268
                L   +WR  F+     K +D   R ++ +  YVR+++  L S+  ++ + +G   + 
Sbjct:   124 DHGLAAALWRTFFN----RKCEDP--RHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWR 177

Query:   269 PL 270
             PL
Sbjct:   178 PL 179

GO:0005739 "mitochondrion" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|F6RX10 UQCC "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 47/182 (25%), Positives = 79/182 (43%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:   103 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 161

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
                     + +      DVE R    GVN  +L K M  +   FY  I+ +D  +L + +
Sbjct:   162 GRSGKYMCRIIVHFMWEDVEQRGRIMGVNPYILKKNMMLMTNNFYAAILGYDEGILSDDR 221

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 268
                L   +WR  F+     K +D   R ++ +  YVR+++  L S++ ++ + +G   + 
Sbjct:   222 G--LAAALWRTFFNQ----KCEDP--RQLELLVEYVRKQIQYLDSMSGEDLLLTGEVSWR 273

Query:   269 PL 270
             PL
Sbjct:   274 PL 275

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1929472 Uqcc "ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 145 (56.1 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 47/182 (25%), Positives = 77/182 (42%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:   102 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 160

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
                     + +      DVE R    GVN  +L K M  +   FY  I+ +D  +L +  
Sbjct:   161 GRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAILGYDEGILSD-- 218

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 268
                L   +WR  F+     K +D   R ++ +  YVR+++  L S+  ++ + +G   + 
Sbjct:   219 DHGLAAALWRTFFNQ----KCEDP--RQLELLVEYVRKQMQYLDSMNGEDLLLTGEVRWR 272

Query:   269 PL 270
             PL
Sbjct:   273 PL 274

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

RGD|1585681 Uqcc "ubiquinol-cytochrome c reductase complex chaperone" [Rattus norvegicus (taxid:10116)]

 Score = 144 (55.7 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 46/182 (25%), Positives = 77/182 (42%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:   106 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 164

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
                     + +      DVE R    GVN  +L K M  +   FY  ++ +D  +L +  
Sbjct:   165 GRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAVLGYDEGILSD-- 222

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 268
                L   +WR  F+     K +D   R ++ +  YVR+++  L S+  ++ + +G   + 
Sbjct:   223 DHGLAAALWRTFFNQ----KCEDP--RQLELLVEYVRKQMQYLDSMNGEDLLLTGEVRWR 276

Query:   269 PL 270
             PL
Sbjct:   277 PL 278

GO:0005739 "mitochondrion" evidence=ISO

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO

UNIPROTKB|F1NGP5 UQCC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 42/182 (23%), Positives = 81/182 (44%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L YS+    +    + Y   V + D    ++   +  T    F +  LH+W CL R    
Sbjct:   101 LKYSRWKIKVAALRM-YTCCVEKTDYEEFFNRCQMPDTLNSWFLVAQLHVWMCLVRMKQE 159

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
                     +Y+      DVE R    G+N ++L + ++ + + FY  +  +D  +L +  
Sbjct:   160 GRAGKYMCRYIVHCMWEDVEQRGKVMGINSVVLKQDLRSMVENFYAALFGYDEGILSD-- 217

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 268
                L   +WRN+F+ +    P     R ++ +  YVR++V  L +L+ ++ + +G   + 
Sbjct:   218 DHVLAAALWRNLFNRN-CEDP-----RHLELLVEYVRKQVQHLDALSGEDLLLTGEVSWR 271

Query:   269 PL 270
             PL
Sbjct:   272 PL 273

GO:0005739 "mitochondrion" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

ZFIN|ZDB-GENE-060929-1034 uqcc "ubiquinol-cytochrome c reductase complex chaperone" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 46/182 (25%), Positives = 78/182 (42%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L Y+K    I    + Y   V +++    ++  +L  T    F +  LH+W CL R    
Sbjct:    93 LKYNKWKIKIAALRM-YTCCVERINYDEFFEKCSLPDTLNSWFLVAQLHVWMCLVRMRQE 151

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVNLLLSKW-MKELEKIFYGNIVAFDAALLPEAK 209
                     +Y+      DVE R    G++    K  MK + + FY  +  +D  +L +  
Sbjct:   152 GRAGKYMCRYIVHSMWEDVEQRSKIMGIDAHQRKESMKVMTETFYAALFGYDEGILSD-- 209

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKE-AMFSGNFMFT 268
                L   IWRNIF+     + +D   R ++ M  YVR+++  +   D E  + +G   + 
Sbjct:   210 DCVLAAAIWRNIFN----RQCEDP--RQLEMMVEYVRKQMQFIDALDGEDLLLTGEVKWR 263

Query:   269 PL 270
             PL
Sbjct:   264 PL 265

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NVA1 UQCC "Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 46/182 (25%), Positives = 77/182 (42%)

Query:    91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 150
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:   106 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 164

Query:   151 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
                     + +      DV+ R    GVN  +L K M  +   FY  I+ +D  +L +  
Sbjct:   165 GRSGKYMCRIIVHFMWEDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGILSD-- 222

Query:   210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 268
                L   +WR  F+     K +D   R ++ +  YVR+++  L S+  ++ + +G   + 
Sbjct:   223 DHGLAAALWRTFFN----RKCEDP--RHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWR 276

Query:   269 PL 270
             PL
Sbjct:   277 PL 278

GO:0005739 "mitochondrion" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

CGD|CAL0006092 orf19.5515 [Candida albicans (taxid:5476)]

 Score = 131 (51.2 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 40/156 (25%), Positives = 77/156 (49%)

Query:   120 YDVFNLEKTFRMTFSLLVLHMWFC-LRRXXXXXXXXXXXXQYLYE-IYNHDVEMRVS-KA 176
             Y+   L K+F     + +LH W   +R             Q L + I+N D++ R+S + 
Sbjct:   140 YETLRLPKSFSQQVQITILHYWILSVRMRALPFKYSKEYQQKLVDRIFN-DLDYRMSTEL 198

Query:   177 GV--NLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 234
             G+  N  +  ++K+      G ++++D  L+ +     L + +WRN+F+ +     ++  
Sbjct:   199 GIKSNRTIEGYLKDYHTQLLGCVLSYDEGLMTD--DITLASALWRNVFNAN-----ENVD 251

Query:   235 VRAVQAMTRYVRREVSCLS-LTDKEAMFSGNFMFTP 269
             +R V+A+  YVR ++  L+ +TD+   F G F F P
Sbjct:   252 MRHVEALLVYVRSQLYVLNKMTDRAFGF-GKFKFVP 286

GO:0034551 "mitochondrial respiratory chain complex III assembly" evidence=IEA

GO:0070131 "positive regulation of mitochondrial translation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0032592 "integral to mitochondrial membrane" evidence=IEA

SGD|S000006136 CBP3 "Mitochondrial protein required for assembly of cytochrome bc1 complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 123 (48.4 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 40/155 (25%), Positives = 67/155 (43%)

Query:   120 YDVFNLEKTFRMTFSLLVLHMWFC-LRRXXXXXXXXXXXXQYLYEIYNHDVEMRV---SK 175
             Y+   L +TF   F + VLH W   +R             Q L +    D+E+R+    K
Sbjct:   144 YEDLKLPRTFSQWFQITVLHEWILFVRMRAMPFKYGRNYQQKLVDRTFSDIELRLFEEMK 203

Query:   176 AGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 235
                  +  +++K+      G I A+D     +     L   +WRN+F   G  K  D   
Sbjct:   204 VNSGRIADQYLKDFNTQLRGAIFAYDEGFATD--DGTLATAVWRNLF---GGRKNIDMV- 257

Query:   236 RAVQAMTRYVRREVSCLS-LTDKEAMFSGNFMFTP 269
               ++++ RY+  ++  LS L+D+E   +G F F P
Sbjct:   258 -HLESVVRYIYSQLYVLSRLSDRE-FATGKFKFVP 290

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032592 "integral to mitochondrial membrane" evidence=IDA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0070131 "positive regulation of mitochondrial translation" evidence=IMP

GO:0043022 "ribosome binding" evidence=IDA;IPI

GO:0005761 "mitochondrial ribosome" evidence=IDA

GO:0034551 "mitochondrial respiratory chain complex III assembly" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	280
pfam03981	139	pfam03981, Ubiq_cyt_C_chap, Ubiquinol-cytochrome C	9e-37
COG5452	180	COG5452, COG5452, Uncharacterized conserved protei	2e-15

>gnl|CDD|217828 pfam03981, Ubiq_cyt_C_chap, Ubiquinol-cytochrome C chaperone

 Score =  127 bits (321), Expect = 9e-37
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 10/148 (6%)

Query: 121 DVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGV-N 179
           +   +  TF   F + VLH+W  LRRL+ EG EG EL Q L++ +  DV+ R+ + GV +
Sbjct: 1   EALGVPDTFNGRFQMTVLHVWLLLRRLRAEGPEGKELEQELFDAFFEDVDARLREEGVGD 60

Query: 180 LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQ 239
           L + K MK+L + FYG ++A+D AL   +    L   +WRN++               + 
Sbjct: 61  LSVPKRMKKLAEAFYGRLLAYDEALG--SDDAALAAALWRNLY-------KGVVDPEKLA 111

Query: 240 AMTRYVRREVSCLSLTDKEAMFSGNFMF 267
            +  YVR +++ L     EA+  G F F
Sbjct: 112 GLVGYVRAQLAHLDALSDEALLVGGFTF 139

Length = 139

>gnl|CDD|227739 COG5452, COG5452, Uncharacterized conserved protein [Function unknown]

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 17/184 (9%)

Query: 89  LMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLK 148
           L LF  K+  ++     +Y  +V+   +PA Y    +  T    F +L LHM     RLK
Sbjct: 3   LDLFLKKRPANLAIVKRLYASIVAAARQPAFYRDLGVPDTPLGRFEMLSLHMILYFHRLK 62

Query: 149 EEGKEGVELGQYLYEIYNHDV-----EMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAA 203
            EG+   E+ Q + + +  DV     E+ +   GV     K MK+L  +FYG + A+DAA
Sbjct: 63  GEGEAAQEIAQEIVDAFFKDVDHSLRELGIGDQGV----PKRMKKLAGMFYGRLEAYDAA 118

Query: 204 LLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSG 263
            L       L   + RNI  D     P+ A       +  YV +    L+   +EA+ +G
Sbjct: 119 -LDGNDATALAAALARNIRPDVEDW-PEAA------GLATYVLKVRDALAAQPEEALATG 170

Query: 264 NFMF 267
           +  +
Sbjct: 171 DLTW 174

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
KOG2873	284	consensus Ubiquinol cytochrome c reductase assembl	100.0
COG5452	180	Uncharacterized conserved protein [Function unknow	100.0
PF03981	141	Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone	100.0

>KOG2873 consensus Ubiquinol cytochrome c reductase assembly protein CBP3 [Energy production and conversion]

Probab=100.00  E-value=3.8e-53  Score=385.42  Aligned_cols=257  Identities=41%  Similarity=0.667  Sum_probs=217.2

Q ss_pred             chhHHHhhhhhccccccchhhhhhhhHHHHHHhhhcccCC----CC----------CCCC-CCccccccccccCCccccc
Q 023600            2 LPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEP----AP----------RPTK-QPVVSLDKMFWSKPASLAL   66 (280)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------~~~~-~~~~~~~~~~~~~p~s~~~   66 (280)
                      ++|.+|.+....++.+ +.+...+......+.-+ |.++|    .|          +++. +=.+++++++|++|||++.
T Consensus         1 Ms~~~~v~~~~~~~~~-tp~~s~~~y~~~t~~~~-~~p~~~l~~spc~~~~~~pV~e~q~~~l~~~~d~~k~~~P~~~~~   78 (284)
T KOG2873|consen    1 MSRLRRVLRLTPKLRR-TPVGSMKIYSHFTRYFG-ASPSPLLNSSPCECSGLTPVFEPQNLPLSVNLDSMKWSPPCSLAA   78 (284)
T ss_pred             CchhHHhhccCcceee-ccccccccccccccccc-CCChhhhccCccccccCCcccccccccccccccccccCCCcchhh
Confidence            3678888888888888 66666555444444422 22210    01          0000 2235889999999999999


Q ss_pred             cCCCCCCCCCCchhhHHHHHHHHhhhhccCchhhhhHHHHHHHHHHhcCChhhhhhcCCCCchhhHHHHHHHHHHHHHHH
Q 023600           67 ALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRR  146 (280)
Q Consensus        67 ~~~s~~~~~e~~~~g~~~~i~kl~gf~sk~s~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~rF~~~~LHvWLll~R  146 (280)
                      ..+++.++-||...|+++++....-+|...+.    +.++|..|+++.+.+.||++|+|||||++||++|+||+|||++|
T Consensus        79 ~~~~~~ri~~~d~~gf~~~~~~~s~~y~~~~a----s~~~y~~~~~~~df~~fy~~f~Lp~TF~sWf~iT~LH~W~ll~R  154 (284)
T KOG2873|consen   79 KGGLPLRIDEPDKVGFRRFILTGSMKYKIQSA----SIQIYKDCIAQVDFEAFYEDFNLPDTFSSWFQITVLHVWLLLMR  154 (284)
T ss_pred             ccCceeeeccccccceeeccchhHHHHHHHHH----HHHHHhhhhhhccHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888776665444    45699999999999999999999999999999999999999999


Q ss_pred             hhhcCc-hhhHHHHHHHHHHHHHHHHHHHHhc-Cc-hhhHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHhcc
Q 023600          147 LKEEGK-EGVELGQYLYEIYNHDVEMRVSKAG-VN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFS  223 (280)
Q Consensus       147 Lr~eg~-~G~~l~Q~L~D~ff~DvE~rlRe~G-V~-~~v~K~mK~l~e~fyG~~~aYDeaL~~~d~d~~LA~ALwRNvf~  223 (280)
                      +|+||. +|+.++|.|++.||+|||.|++++| || ...+++||+|.++|||+++|||||+.++  |..||.|||||+|+
T Consensus       155 l~~eg~~~g~~l~q~lv~~mw~DvelR~~k~gkvN~~r~~~~mk~l~~qf~gaifaYDeG~l~d--D~vLA~alWRnlF~  232 (284)
T KOG2873|consen  155 LKAEGQGEGVDLQQYLVERMWEDVELRLSKAGKVNSLRTKQYMKDLERQFYGAIFAYDEGFLSD--DRVLATALWRNLFS  232 (284)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhccccccc--chHHHHHHHHHHhC
Confidence            999997 8999999999999999999999999 99 5566699999999999999999999987  57999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHhccCCCHhhhhccc-cccCCCC
Q 023600          224 DDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGN-FMFTPLE  271 (280)
Q Consensus       224 ~~~~~~pd~~~~~~l~~La~YVRr~l~~L~~~~~d~ll~G~-~~f~~~~  271 (280)
                      ++++     +|+.+++.+|+|||+|+..|+.+++++++.|. +.|-++.
T Consensus       233 ~r~~-----~D~~hle~vV~YvR~qv~~Ls~l~t~dfivg~~v~f~pl~  276 (284)
T KOG2873|consen  233 GRGN-----VDLVHLEAVVRYVRSQVYSLSSLSTDDFIVGGPVLFVPLQ  276 (284)
T ss_pred             CCCC-----cCHHHHHHHHHHHHHHHHHHhccChhhhhccCceeeccCC
Confidence            9863     46789999999999999999999998887555 9999985

>COG5452 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.4e-42  Score=292.02  Aligned_cols=175  Identities=26%  Similarity=0.420  Sum_probs=161.4

Q ss_pred             hhhhccCc-hhhhhHHHHHHHHHHhcCChhhhhhcCCCCchhhHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHHHH
Q 023600           90 MLFYSKQS-KSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHD  168 (280)
Q Consensus        90 ~gf~sk~s-~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~ff~D  168 (280)
                      ++.|.|++ .+...+.++|..+|+++|+|.||.++|||||..|||+|+.|||.++++|+|.+|+.+.+++|+|+|.||.|
T Consensus         3 ~~lf~k~~~an~Ai~krlYa~~vaaARq~~fY~d~~VpDt~~GRfEmlSlh~il~~~R~kg~g~a~qeiaQei~Daff~d   82 (180)
T COG5452           3 LDLFLKKRPANLAIVKRLYASIVAAARQPAFYRDLGVPDTPLGRFEMLSLHMILYFHRLKGEGEAAQEIAQEIVDAFFKD   82 (180)
T ss_pred             hHHhcCCCchhHHHHHHHHHHHHHHHhchhHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence            45566777 45667788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHhccCCCCCCCChhHHHHHHHHHHHHHH
Q 023600          169 VEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRR  247 (280)
Q Consensus       169 vE~rlRe~GV~-~~v~K~mK~l~e~fyG~~~aYDeaL~~~d~d~~LA~ALwRNvf~~~~~~~pd~~~~~~l~~La~YVRr  247 (280)
                      +|+.+||+||+ ..|+|+||||..+||||+.+||.||...| ..+|++||-||++...++       ++....|+.||..
T Consensus        83 vDhs~RElGigD~gVpKrMKKlAgmFYGRl~aY~aAld~~d-~~alaaal~Rn~~pd~~~-------~p~a~~La~yv~~  154 (180)
T COG5452          83 VDHSLRELGIGDQGVPKRMKKLAGMFYGRLEAYDAALDGND-ATALAAALARNIRPDVED-------WPEAAGLATYVLK  154 (180)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHhHHHHHHHHhcccc-hHHHHHHHHHhccccccc-------cchhHHHHHHHHH
Confidence            99999999998 99999999999999999999999998764 689999999999976543       4568999999999


Q ss_pred             HHHhccCCCHhhhhccccccCCCCC
Q 023600          248 EVSCLSLTDKEAMFSGNFMFTPLEN  272 (280)
Q Consensus       248 ~l~~L~~~~~d~ll~G~~~f~~~~~  272 (280)
                      .-.+|..+|+|.|.+|++.||.+.+
T Consensus       155 ~~~~Laaq~~eal~~G~~t~p~p~g  179 (180)
T COG5452         155 VRDALAAQPEEALATGDLTWPLPDG  179 (180)
T ss_pred             HHHHHHcCcHHHHHhCceeecCCCC
Confidence            9999999999999999999997754

>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase

Probab=100.00  E-value=2.2e-38  Score=264.40  Aligned_cols=140  Identities=36%  Similarity=0.642  Sum_probs=132.2

Q ss_pred             hhcCCCCchhhHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHH
Q 023600          121 DVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVA  199 (280)
Q Consensus       121 ~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~ff~DvE~rlRe~GV~-~~v~K~mK~l~e~fyG~~~a  199 (280)
                      ++||+||||++||+++.||+||+++|||+++++|+.+.|.|+|.||+|+|.+||++||+ ..++|+||+|.++|||++.+
T Consensus         1 ~~~~~~dt~~~~f~~~~lh~~l~~~RLk~~~~~~~~~~q~l~~~~~~d~~~~l~~~gv~d~~~~k~~k~l~~~~~g~~~a   80 (141)
T PF03981_consen    1 EHFGVPDTFAGRFQMLGLHVWLVLRRLKAEGKEGKELEQALFDKFFEDMDERLREMGVGDLSVGKRMKKLQEQFYGRLLA   80 (141)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999998899999999999999999999999997 88899999999999999999


Q ss_pred             HHHhhCCCCChHHHHHHHHHHhccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCCCHhhhhcccccc
Q 023600          200 FDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMF  267 (280)
Q Consensus       200 YDeaL~~~d~d~~LA~ALwRNvf~~~~~~~pd~~~~~~l~~La~YVRr~l~~L~~~~~d~ll~G~~~f  267 (280)
                      ||+|+..+  +.+||+|||||+|++..+     .++++++.|+.|||+++.+|+.+|.+.++.|.+.|
T Consensus        81 yd~al~~~--~~~La~al~rnv~~~~~~-----~~~~~~~~l~~yv~~~~~~l~~~~~~~~~~g~~~~  141 (141)
T PF03981_consen   81 YDEALGSD--DAALAAALWRNVFGGREE-----RDPAQLAGLAGYVRRQLWHLDDLPDPAYLVGIPRF  141 (141)
T ss_pred             HHHHhccC--HHHHHHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHHHHCCCHHHHHhCCCCC
Confidence            99999873  799999999999998732     24679999999999999999999999999999988

It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	280
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 8e-05
 Identities = 32/243 (13%), Positives = 74/243 (30%), Gaps = 47/243 (19%)

Query: 5   W-----CRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVVSLDKMFWS 59
           W     C +  ++  +            ++   T+ +                L ++  S
Sbjct: 186 WLNLKNCNSPETV--LEMLQKLLYQIDPNW---TSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 60  K--PASLALALDSPLRVDEPKYEGIKRFILKL-MLFYSKQSKSIRGANVIYKRVVSQVDK 116
           K     L L L +   V   K      F L   +L  ++  +     +      +S    
Sbjct: 241 KPYENCL-LVLLN---VQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 117 PAIYDVFNLEKTFRMTFSLLVLHM-WFCLRR------------LKEEGKEGVELGQYLYE 163
                    ++    +  L  L      L R            + E  ++G+      ++
Sbjct: 295 S---MTLTPDEV--KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WK 348

Query: 164 IYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAF-DAALLPEAKQDELQNVIWRNIF 222
             N D    + ++ +N+L     +++    +  +  F  +A +P      L ++IW ++ 
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKM----FDRLSVFPPSAHIPT----ILLSLIWFDVI 400

Query: 223 SDD 225
             D
Sbjct: 401 KSD 403

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00