Citrus Sinensis ID: 023601

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYNPLERRESCKGGKEASKKSASSQSTNKGVTAAPKAQSSHNARRHDVTSVNPTTQASKTSKPSAVVPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQAMVFHQQKEAEPLSPIAEVSEERTSSETQKRKNIVNVDVDTAGITTLSPRQRLSDVSDVHCSGSPLMTY
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccEccEEEEEcccHHHHHHHHHHHHHHHHHHcccccEEEHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccHHHHHHHHHHHHccccccccHHHHHHcccccccccccccccccccccccHHHccccccccccHHHHHHHccccHccccccccccccccccccc
mdathpgmvpmhkvnfdAKSEYEMIQNYKVLQDVFNKLKITKHIEvnklikgrpldnlEFMQWMKRYCDSvngglihsynplerresckggkeaskksassqstnkgvtaapkaqsshnarrhdvtsvnpttqasktskpsavvpaydEQITELKLSVDSLEKERDFYFAKLRDIEIlcqspgiehlpIVGAIKRILYATDDDASVVAEAQAMVFHQqkeaeplspiaevseertssetqkrknivnvdvdtagittlsprqrlsdvsdvhcsgsplmty
mdathpgmvpmHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHievnklikgrpldNLEFMQWMKRYCDSVNGGLIHSYNPLERRESCKGGKEAskksassqstnkgvtaapkaqsshnarrhdvtsvnpttqasktskpsavvpaYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQAMVFHqqkeaeplspiaevseertssetqkrknivnvdvdtagittlsprqrlsdvsdvhcsgsplmty
MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYNPLERResckggkeaskksassqsTNKGVTAAPKAQSSHNARRHDVTSVNPTTQASKTSKPSAVVPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQAMVFHQQKEAEPLSPIAEVSEERTSSETQKRKNIVNVDVDTAGITTLSPRQRLSDVSDVHCSGSPLMTY
*************VNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYN********************************************************************EQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQAMVF********************************VDVDT****************************
MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIH*******************************************************************************SVDSLEKERDFYFAKLRDIEILC********PIVGAIKRILYATDDDA*******************************************************************CSGSPLM**
MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYNPLE*************************************************************PAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQAMVFHQQKEAEPLSP**************KRKNIVNVDVDTAGITTLSPRQRLSDVSDVHCSGSPLMTY
***THPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYNPLERRE*******************************************************AVVPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAE***************************************D*DTAG*TT**********SD**C********
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MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYNPLERRESCKGGKEASKKSASSQSTNKGVTAAPKAQSSHNARRHDVTSVNPTTQASKTSKPSAVxxxxxxxxxxxxxxxxxxxxxRDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQAMVFHQQKEAEPLSPIAEVSEERTSSETQKRKNIVNVDVDTAGITTLSPRQRLSDVSDVHCSGSPLMTY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query280 2.2.26 [Sep-21-2011]
Q9FGQ6329 Microtubule-associated pr yes no 0.953 0.811 0.663 1e-99
Q7XJ60276 Microtubule-associated pr no no 0.714 0.724 0.558 7e-64
Q9FJJ5293 Microtubule-associated pr no no 0.714 0.682 0.559 2e-63
Q9UPY8281 Microtubule-associated pr yes no 0.703 0.701 0.385 1e-32
Q5XIT1281 Microtubule-associated pr yes no 0.703 0.701 0.385 1e-32
Q6PER3281 Microtubule-associated pr yes no 0.703 0.701 0.385 1e-32
Q66T82263 Microtubule-associated pr N/A no 0.692 0.737 0.396 1e-31
Q6V291263 Microtubule-associated pr N/A no 0.692 0.737 0.396 2e-31
Q6P848269 Microtubule-associated pr yes no 0.685 0.713 0.409 7e-31
Q5ZLC7258 Microtubule-associated pr yes no 0.689 0.748 0.408 1e-30
>sp|Q9FGQ6|EB1C_ARATH Microtubule-associated protein RP/EB family member 1C OS=Arabidopsis thaliana GN=EB1C PE=1 SV=1 Back     alignment and function desciption
 Score =  362 bits (929), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/294 (66%), Positives = 225/294 (76%), Gaps = 27/294 (9%)

Query: 1   MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEF 60
           MD+ HPG VPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEV+KL+KGRPLDNLEF
Sbjct: 47  MDSVHPGTVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEF 106

Query: 61  MQWMKRYCDSVNGGLIHSYNPLERRESCKGGKEASKKSASSQ--STNKGVTAAPKAQSSH 118
           MQWMK+YCDSVNGG  H+Y+ LERRE+ KGGKEA+K++A++Q    +   +A P+  SS+
Sbjct: 107 MQWMKKYCDSVNGGQ-HNYHALERREASKGGKEATKRAAATQQSGKSSSSSAPPRPSSSN 165

Query: 119 NARRHDVTSVNPTTQASKT------SKPSAV----VPAYDEQITELKLSVDSLEKERDFY 168
             R+H+  S N  T  S T      SKPSA     VPAYDE+ITELKL +DSLEKERDFY
Sbjct: 166 GTRKHEPQSNNTGTHHSSTGNHHHSSKPSAKQSKPVPAYDEKITELKLYIDSLEKERDFY 225

Query: 169 FAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQAMVFHQQKEAEPLSPIA 228
           F+KLRD+EILCQ+P  EHLP+VG+IKRILYA D +    AE Q            LSPIA
Sbjct: 226 FSKLRDVEILCQNPDTEHLPLVGSIKRILYAADGEDVGAAETQT-----------LSPIA 274

Query: 229 EVSEERTSS--ETQKRKNIVNVDVDTAGITTLSPRQRLSDVSDVHCSG-SPLMT 279
           E SEER +S  E+QKRK IVN+DVD A ITTLSPRQRLSD SDV CSG SPL+T
Sbjct: 275 EGSEERRNSVTESQKRKLIVNLDVDVAAITTLSPRQRLSDASDVKCSGSSPLLT 328
Plant-specific EB1 subtype that functions preferentially at early stages of plant mitosis by regulating spindle positioning and chromosome segregation. Accumulates in the prophase nucleus and is required to maintain spindle bipolarity during premetaphase and/or metaphase and for efficient segregation of chromosomes at anaphase. May play a role in the dynamics of microtubule network in elongating pollen tubes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7XJ60|EB1A_ARATH Microtubule-associated protein RP/EB family member 1A OS=Arabidopsis thaliana GN=EB1A PE=1 SV=1 Back     alignment and function description
>sp|Q9FJJ5|EB1B_ARATH Microtubule-associated protein RP/EB family member 1B OS=Arabidopsis thaliana GN=EB1B PE=1 SV=1 Back     alignment and function description
>sp|Q9UPY8|MARE3_HUMAN Microtubule-associated protein RP/EB family member 3 OS=Homo sapiens GN=MAPRE3 PE=1 SV=1 Back     alignment and function description
>sp|Q5XIT1|MARE3_RAT Microtubule-associated protein RP/EB family member 3 OS=Rattus norvegicus GN=Mapre3 PE=1 SV=1 Back     alignment and function description
>sp|Q6PER3|MARE3_MOUSE Microtubule-associated protein RP/EB family member 3 OS=Mus musculus GN=Mapre3 PE=1 SV=1 Back     alignment and function description
>sp|Q66T82|MARE1_COTJA Microtubule-associated protein RP/EB family member 1 OS=Coturnix coturnix japonica GN=MAPRE1 PE=2 SV=1 Back     alignment and function description
>sp|Q6V291|MARE1_COTCO Microtubule-associated protein RP/EB family member 1 OS=Coturnix coturnix GN=MAPRE1 PE=2 SV=1 Back     alignment and function description
>sp|Q6P848|MARE1_XENTR Microtubule-associated protein RP/EB family member 1 OS=Xenopus tropicalis GN=mapre1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZLC7|MARE1_CHICK Microtubule-associated protein RP/EB family member 1 OS=Gallus gallus GN=MAPRE1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
225438831326 PREDICTED: microtubule-associated protei 0.989 0.849 0.770 1e-122
356496933327 PREDICTED: microtubule-associated protei 0.992 0.850 0.765 1e-119
255637453327 unknown [Glycine max] 0.992 0.850 0.761 1e-118
449448288329 PREDICTED: microtubule-associated protei 0.996 0.848 0.760 1e-117
356541733329 PREDICTED: microtubule-associated protei 0.992 0.844 0.752 1e-116
147810962 415 hypothetical protein VITISV_038876 [Viti 0.964 0.650 0.732 1e-115
296087397305 unnamed protein product [Vitis vinifera] 0.921 0.845 0.729 1e-113
449468309325 PREDICTED: microtubule-associated protei 0.975 0.84 0.699 1e-110
229890018334 AtEB1c-like protein [Nicotiana tabacum] 0.992 0.832 0.679 1e-110
388508912327 unknown [Lotus japonicus] 0.992 0.850 0.718 1e-106
>gi|225438831|ref|XP_002283607.1| PREDICTED: microtubule-associated protein RP/EB family member 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/283 (77%), Positives = 246/283 (86%), Gaps = 6/283 (2%)

Query: 1   MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEF 60
           MD+ HPG+VPMHKVNFDAK+EYEMIQNYKVLQDVFNKL+ITKHIEV+KL+KGRPLDNLEF
Sbjct: 47  MDSVHPGIVPMHKVNFDAKNEYEMIQNYKVLQDVFNKLRITKHIEVSKLVKGRPLDNLEF 106

Query: 61  MQWMKRYCDSVNGGLIHSYNPLERRESCKGGKEASKKSASSQSTNKGVTAAPKAQSSHNA 120
           MQWMKRYCDSVNGGL++SYNPLERRE+ KGGKEASKK   SQ + K  TAAPKAQ SHNA
Sbjct: 107 MQWMKRYCDSVNGGLLNSYNPLERREASKGGKEASKK--PSQPSAKSSTAAPKAQPSHNA 164

Query: 121 RRHDVTSVNPTTQASKTSKP-SAVVPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILC 179
           R++D +S + T  + K S+P S+  PAYDE+ITELKLS+DSLEKERDFYFAKLRDIEILC
Sbjct: 165 RKNDASSASTTNLSVKVSRPGSSGGPAYDEKITELKLSIDSLEKERDFYFAKLRDIEILC 224

Query: 180 QSPGIEHLPIVGAIKRILYATDDDASVVAEAQAMV--FHQQKEAEPLSPIAEVSEERTSS 237
           Q P IEHL +VGAIKRILYATDD+ASVVAEAQAMV   HQ+  AEPLSPI+E+ EE+   
Sbjct: 225 QCPEIEHLTVVGAIKRILYATDDNASVVAEAQAMVSSLHQEG-AEPLSPISELPEEKPKP 283

Query: 238 ETQKRKNIVNVDVDTAGITTLSPRQRLSDVSDVHCSGSPLMTY 280
           ETQKRK I+N +VD A ITTLSPRQR+SD SDVHCSGSPLMTY
Sbjct: 284 ETQKRKIIMNHEVDVAAITTLSPRQRISDASDVHCSGSPLMTY 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356496933|ref|XP_003517319.1| PREDICTED: microtubule-associated protein RP/EB family member 1-like [Glycine max] Back     alignment and taxonomy information
>gi|255637453|gb|ACU19054.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449448288|ref|XP_004141898.1| PREDICTED: microtubule-associated protein RP/EB family member 1C-like [Cucumis sativus] gi|449485429|ref|XP_004157165.1| PREDICTED: microtubule-associated protein RP/EB family member 1C-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356541733|ref|XP_003539328.1| PREDICTED: microtubule-associated protein RP/EB family member 1-like [Glycine max] Back     alignment and taxonomy information
>gi|147810962|emb|CAN59804.1| hypothetical protein VITISV_038876 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087397|emb|CBI33771.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449468309|ref|XP_004151864.1| PREDICTED: microtubule-associated protein RP/EB family member 1C-like [Cucumis sativus] gi|449484034|ref|XP_004156765.1| PREDICTED: microtubule-associated protein RP/EB family member 1C-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|229890018|dbj|BAH58382.1| AtEB1c-like protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|388508912|gb|AFK42522.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
TAIR|locus:2157177329 EB1C "end binding protein 1C" 0.953 0.811 0.632 2.4e-85
TAIR|locus:2100417276 EB1a "microtubule end binding 0.714 0.724 0.539 2.5e-56
TAIR|locus:2154149293 EB1B "end binding protein 1B" 0.817 0.781 0.496 4.8e-55
UNIPROTKB|Q0VC55266 MAPRE3 "Uncharacterized protei 0.771 0.812 0.367 4.2e-31
UNIPROTKB|Q9UPY8281 MAPRE3 "Microtubule-associated 0.782 0.779 0.361 1.1e-30
UNIPROTKB|E2RDE0281 MAPRE3 "Uncharacterized protei 0.782 0.779 0.361 1.4e-30
MGI|MGI:2140967281 Mapre3 "microtubule-associated 0.782 0.779 0.361 1.4e-30
RGD|1359297281 Mapre3 "microtubule-associated 0.782 0.779 0.361 1.4e-30
UNIPROTKB|I3LQA8281 MAPRE3 "Uncharacterized protei 0.782 0.779 0.361 3e-30
ZFIN|ZDB-GENE-040704-6262 mapre3b "microtubule-associate 0.692 0.740 0.379 1.6e-29
TAIR|locus:2157177 EB1C "end binding protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 186/294 (63%), Positives = 210/294 (71%)

Query:     1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEF 60
             MD+ HPG VPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEV+KL+KGRPLDNLEF
Sbjct:    47 MDSVHPGTVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEF 106

Query:    61 MQWMKRYCDSVNGGLIHSYNPLERRXXXXXXXXXXXXXXXXXXTNKGVT--AAPKAQSSH 118
             MQWMK+YCDSVNGG  H+Y+ LERR                  + K  +  A P+  SS+
Sbjct:   107 MQWMKKYCDSVNGGQ-HNYHALERREASKGGKEATKRAAATQQSGKSSSSSAPPRPSSSN 165

Query:   119 NARRHDVTSVNPTTQASKT------SKPSAV----VPAYDEQITELKLSVDSLEKERDFY 168
               R+H+  S N  T  S T      SKPSA     VPAYDE+ITELKL +DSLEKERDFY
Sbjct:   166 GTRKHEPQSNNTGTHHSSTGNHHHSSKPSAKQSKPVPAYDEKITELKLYIDSLEKERDFY 225

Query:   169 FAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQAMVFHQQKEAEPLSPIA 228
             F+KLRD+EILCQ+P  EHLP+VG+IKRILYA D +    AE Q            LSPIA
Sbjct:   226 FSKLRDVEILCQNPDTEHLPLVGSIKRILYAADGEDVGAAETQT-----------LSPIA 274

Query:   229 EVSEERTSS--ETQKRKNIVNVDVDTAGITTLSPRQRLSDVSDVHCSGS-PLMT 279
             E SEER +S  E+QKRK IVN+DVD A ITTLSPRQRLSD SDV CSGS PL+T
Sbjct:   275 EGSEERRNSVTESQKRKLIVNLDVDVAAITTLSPRQRLSDASDVKCSGSSPLLT 328
GO:0005737 "cytoplasm" evidence=ISM
GO:0008017 "microtubule binding" evidence=IEA;ISS
GO:0030865 "cortical cytoskeleton organization" evidence=ISS
GO:0005618 "cell wall" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0005819 "spindle" evidence=IDA
GO:0009524 "phragmoplast" evidence=IDA
GO:0009652 "thigmotropism" evidence=IMP
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
TAIR|locus:2100417 EB1a "microtubule end binding protein EB1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154149 EB1B "end binding protein 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VC55 MAPRE3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UPY8 MAPRE3 "Microtubule-associated protein RP/EB family member 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDE0 MAPRE3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2140967 Mapre3 "microtubule-associated protein, RP/EB family, member 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359297 Mapre3 "microtubule-associated protein, RP/EB family, member 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQA8 MAPRE3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040704-6 mapre3b "microtubule-associated protein, RP/EB family, member 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FGQ6EB1C_ARATHNo assigned EC number0.66320.95350.8115yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
COG5217342 COG5217, BIM1, Microtubule-binding protein involve 2e-23
pfam0327143 pfam03271, EB1, EB1-like C-terminal motif 8e-14
>gnl|CDD|227542 COG5217, BIM1, Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score = 97.0 bits (241), Expect = 2e-23
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 9/182 (4%)

Query: 9   VPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYC 68
           +P   V F   +EY+   N K+LQ +F+   I K + V  L++ +  DNLEF+QW+K + 
Sbjct: 47  LPDSLVRFPWIAEYKHPGNGKILQLLFSDYGIDKAVLVLVLVRCKLQDNLEFLQWLKDHW 106

Query: 69  DSVNGGLIHSYN-------PLERRESCKGGKEASKKSASSQSTNKGVTAAPKAQSSHNAR 121
               G + +  N       P   RE  +  +      ++ +  +KGV +     + H++ 
Sbjct: 107 VRNLGHISYDRNARRLGRTPKSTRELIEWIRSLGIPISAIRELSKGVASCKSLSTIHSSF 166

Query: 122 RHDVTSVNPTTQASKTSKPSA--VVPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILC 179
             +       T     +  +    + + + ++     ++  LE ER FYF KLR IEIL 
Sbjct: 167 PQNFVKNTAGTHDYLRAMQACQEFIGSLNIKLYFPVDTLVKLEMERAFYFNKLRSIEILV 226

Query: 180 QS 181
           ++
Sbjct: 227 ET 228

Length = 342
>gnl|CDD|202587 pfam03271, EB1, EB1-like C-terminal motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 280
KOG3000295 consensus Microtubule-binding protein involved in 100.0
COG5217342 BIM1 Microtubule-binding protein involved in cell 100.0
PF0327143 EB1: EB1-like C-terminal motif; InterPro: IPR00495 99.8
cd00014107 CH Calponin homology domain; actin-binding domain 97.41
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 97.39
smart00033103 CH Calponin homology domain. Actin binding domains 95.09
KOG1899 861 consensus LAR transmembrane tyrosine phosphatase-i 81.22
PF1141484 Suppressor_APC: Adenomatous polyposis coli tumour 81.1
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=9.1e-60  Score=439.64  Aligned_cols=207  Identities=43%  Similarity=0.658  Sum_probs=158.8

Q ss_pred             CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHHHhhCCCCCCCCC
Q 023601            1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYN   80 (280)
Q Consensus         1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~d~n~~g~~~~YD   80 (280)
                      |||||||+|||+||||+|+.||||++|||+||++|+||||+|+|||++|+||+|||||||+||||+|||+||+|  .+||
T Consensus        48 md~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~~f~klgi~k~v~vdkLvKg~~qDNlEF~qWfkkffd~~~~g--~~yd  125 (295)
T KOG3000|consen   48 MDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQTCFNKLGIDKVVDVDKLVKGPFQDNLEFLQWFKKFFDANYGG--KGYD  125 (295)
T ss_pred             hhhccCCccccccccccccccchhhhhhHHHHHHHHhcCCcccccHHHHhcccccchHHHHHHHHHHhhccCCc--cccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999998  7999


Q ss_pred             HHHhhhhcCCCCCCCcCCCCCCCCCCC----CCCCCC---CCCCCCCccCCCCCCCCC----CCCCCCCCCCCchhHHHH
Q 023601           81 PLERRESCKGGKEASKKSASSQSTNKG----VTAAPK---AQSSHNARRHDVTSVNPT----TQASKTSKPSAVVPAYDE  149 (280)
Q Consensus        81 p~~rR~~~~gg~~~~~~~~~~~~~s~~----a~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~~  149 (280)
                      |++||++.+++......++.+.+.+..    +++.+.   +...+...++.......+    ....+.....+++.+|.+
T Consensus       126 ~~~~R~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qe~~~l~~  205 (295)
T KOG3000|consen  126 ALARREGIGIGRSAISEGSKGVSAPKILSPVSSAAPQNFVPARTPQTLRNNKPCVEFGGKPNIALYPVDKLKQELEELTQ  205 (295)
T ss_pred             HHHHhhcccccccCccccccccccccccccccccCcccCCCccCcccccCCCCCcccccccccccccchhhhHHHHHHHH
Confidence            999999986665443222211111100    000000   011111111111100000    000011123667899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCChh--HHHHHHHHHhccCCCCccchh
Q 023601          150 QITELKLSVDSLEKERDFYFAKLRDIEILCQS-PGIEHLP--IVGAIKRILYATDDDASVVAE  209 (280)
Q Consensus       150 qi~eLk~~ve~LEkERDFYF~KLRdIEiLcQe-~e~e~~~--~i~~I~~ILYATeeg~~~~~e  209 (280)
                      |+.++++++++||+||||||+|||+||||||+ ++.++.|  ++++|+.|||+|++||+.+++
T Consensus       206 ~l~~~~~~~~~le~ERdfyf~kLr~iEil~q~~~~~e~~~~~~v~rI~~ilyat~~g~~~~~~  268 (295)
T KOG3000|consen  206 QLTELKTTIASLEKERDFYFSKLRDIEILCQTSPDPESIPNVMVKRILSILYATEEGFDPPPD  268 (295)
T ss_pred             HHHHHHHhhhhhHHHHHHHHhhccchhhhccCCCccccccHHHHHHHHHHHhhhhccccCCCc
Confidence            99999999999999999999999999999998 6677777  899999999999999988764

>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>PF03271 EB1: EB1-like C-terminal motif; InterPro: IPR004953 A group of microtubule-associated proteins called +TIPs (plus end tracking proteins), including EB1 (end-binding protein 1) family proteins, label growing microtubules ends specifically in diverse organisms and are implicated in spindle dynamics, chromosome segregation, and directing microtubules toward cortical sites Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
2r8u_A268 Structure Of Fragment Of Human End-Binding Protein 3e-30
1wyo_A159 Solution Structure Of The Ch Domain Of Human Microt 5e-16
3co1_A132 Crystal Structure Of Microtubule Binding Domain Of 6e-16
1vka_A153 Southeast Collaboratory For Structural Genomics: Hy 1e-15
1pa7_A130 Crystal Structure Of Amino-Terminal Microtubule Bin 2e-15
1v5k_A115 Solution Structure Of The Ch Domain From Mouse Eb-1 4e-15
2qjz_A123 Structural Basis Of Microtubule Plus End Tracking B 3e-14
4abo_I145 Mal3 Ch Domain Homology Model And Mammalian Tubulin 5e-12
3tq7_B82 Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Do 6e-12
1yig_A76 Crystal Structure Of The Human Eb1 C-Terminal Dimer 2e-11
1yib_A76 Crystal Structure Of The Human Eb1 C-terminal Dimer 3e-11
2qjx_A127 Structural Basis Of Microtubule Plus End Tracking B 3e-11
1txq_B86 Crystal Structure Of The Eb1 C-Terminal Domain Comp 7e-11
3gjo_A72 Crystal Structure Of Human Eb1 In Complex With Micr 7e-11
1wu9_A80 Crystal Structure Of The C-Terminal Domain Of The E 1e-10
3tq7_A78 Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Do 1e-10
3mtu_A75 Structure Of The Tropomyosin Overlap Complex From C 1e-05
3mud_C75 Structure Of The Tropomyosin Overlap Complex From C 2e-05
4e61_A106 Crystal Structure Of The Eb1-Like Motif Of Bim1p Le 2e-05
>pdb|2R8U|A Chain A, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1) Containing The N-Terminal Domain At 1.35 A Resolution Length = 268 Back     alignment and structure 
Iteration: 1

 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 111/209 (53%), Gaps = 12/209 (5%)
Query: 1   MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEF 60
           MD   PG + + KV F AK E+E IQN+K+LQ  F ++ + K I V+KL+KG+  DN EF
Sbjct: 48  MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEF 107
Query: 61  MQWMKRYCDSVNGGLIHSYNPLERRXXXXXXXXXXXXXXXXXXTNKGVTAAPKA-QSSHN 119
           +QW K++ D+   G    Y+P+  R                    K +T++  A Q   +
Sbjct: 108 VQWFKKFFDANYDG--KDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPIS 165
Query: 120 ARRHDVTSVNPTTQASKTSKPSAVVPAYDE------QITELKLSVDSLEKERDFYFAKLR 173
            +R   T+  P        K   V    DE      Q+  LKL+V+ LEKERDFYF KLR
Sbjct: 166 TQR---TAAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLR 222
Query: 174 DIEILCQSPGIEHLPIVGAIKRILYATDD 202
           +IE++CQ    E+ P++  I  ILYATD+
Sbjct: 223 NIELICQENEGENDPVLQRIVDILYATDE 251
>pdb|1WYO|A Chain A, Solution Structure Of The Ch Domain Of Human Microtubule- Associated Protein RpEB FAMILY MEMBER 3 Length = 159 Back     alignment and structure
>pdb|3CO1|A Chain A, Crystal Structure Of Microtubule Binding Domain Of Human Eb3 Length = 132 Back     alignment and structure
>pdb|1VKA|A Chain A, Southeast Collaboratory For Structural Genomics: Hypothetical Human Protein Q15691 N-Terminal Fragment Length = 153 Back     alignment and structure
>pdb|1PA7|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding Domain Of Eb1 Length = 130 Back     alignment and structure
>pdb|1V5K|A Chain A, Solution Structure Of The Ch Domain From Mouse Eb-1 Length = 115 Back     alignment and structure
>pdb|2QJZ|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 123 Back     alignment and structure
>pdb|4ABO|I Chain I, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp) Docked Into The 8.6-Angstrom Cryo-Em Map Of Mal3-Gtpgammas-Microtubules Length = 145 Back     alignment and structure
>pdb|3TQ7|B Chain B, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of P150glued Length = 82 Back     alignment and structure
>pdb|1YIG|A Chain A, Crystal Structure Of The Human Eb1 C-Terminal Dimerization Domain Length = 76 Back     alignment and structure
>pdb|1YIB|A Chain A, Crystal Structure Of The Human Eb1 C-terminal Dimerization Domain Length = 76 Back     alignment and structure
>pdb|2QJX|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 127 Back     alignment and structure
>pdb|1TXQ|B Chain B, Crystal Structure Of The Eb1 C-Terminal Domain Complexed With The Cap-Gly Domain Of P150glued Length = 86 Back     alignment and structure
>pdb|3GJO|A Chain A, Crystal Structure Of Human Eb1 In Complex With Microtubule Tip Localization Signal Peptide Of Macf Length = 72 Back     alignment and structure
>pdb|1WU9|A Chain A, Crystal Structure Of The C-Terminal Domain Of The End- Binding Protein 1 (Eb1) Length = 80 Back     alignment and structure
>pdb|3TQ7|A Chain A, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of P150glued Length = 78 Back     alignment and structure
>pdb|3MTU|A Chain A, Structure Of The Tropomyosin Overlap Complex From Chicken Smooth Muscle Length = 75 Back     alignment and structure
>pdb|3MUD|C Chain C, Structure Of The Tropomyosin Overlap Complex From Chicken Smooth Muscle Length = 75 Back     alignment and structure
>pdb|4E61|A Chain A, Crystal Structure Of The Eb1-Like Motif Of Bim1p Length = 106 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
2r8u_A268 Microtubule-associated protein RP/EB family member 2e-66
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 6e-39
2qjz_A123 Microtubule-associated protein RP/EB family member 2e-38
4abo_I145 MAL3, microtubule integrity protein MAL3; structur 5e-36
2qjx_A127 Protein BIM1; calponin homology domain, protein bi 8e-35
3tq7_B82 Microtubule-associated protein RP/EB family membe; 6e-25
3mtu_A75 Tropomyosin alpha-1 chain, microtubule-associated 3e-20
4e61_A106 Protein BIM1; EB1-like motif, coiled-coil, spindle 4e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Length = 268 Back     alignment and structure
 Score =  207 bits (527), Expect = 2e-66
 Identities = 72/217 (33%), Positives = 110/217 (50%), Gaps = 6/217 (2%)

Query: 1   MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEF 60
           MD   PG + + KV F AK E+E IQN+K+LQ  F ++ + K I V+KL+KG+  DN EF
Sbjct: 48  MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEF 107

Query: 61  MQWMKRYCDSVNGGLIHSYNPLERRESCKGG---KEASKKSASSQSTNKGVTAAPKAQSS 117
           +QW K++ D+   G    Y+P+  R+  +        +      +      +AAP+   S
Sbjct: 108 VQWFKKFFDANYDG--KDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPIS 165

Query: 118 HNARRHDVTSVNPTTQASKTSKPSAV-VPAYDEQITELKLSVDSLEKERDFYFAKLRDIE 176
                    +     + +              +Q+  LKL+V+ LEKERDFYF KLR+IE
Sbjct: 166 TQRTAAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIE 225

Query: 177 ILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQAM 213
           ++CQ    E+ P++  I  ILYATD+   +  E    
Sbjct: 226 LICQENEGENDPVLQRIVDILYATDEGFVIPDEGGPQ 262
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 159 Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Length = 123 Back     alignment and structure
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Length = 145 Back     alignment and structure
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Length = 127 Back     alignment and structure
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} Length = 82 Back     alignment and structure
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C* Length = 75 Back     alignment and structure
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae} Length = 106 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
2r8u_A268 Microtubule-associated protein RP/EB family member 100.0
4abo_I145 MAL3, microtubule integrity protein MAL3; structur 100.0
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 100.0
2qjx_A127 Protein BIM1; calponin homology domain, protein bi 100.0
2qjz_A123 Microtubule-associated protein RP/EB family member 100.0
3tq7_B82 Microtubule-associated protein RP/EB family membe; 99.95
4e61_A106 Protein BIM1; EB1-like motif, coiled-coil, spindle 99.92
3mtu_A75 Tropomyosin alpha-1 chain, microtubule-associated 99.91
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 90.47
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 89.56
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 89.34
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 89.11
1wyl_A116 NEDD9 interacting protein with calponin homology a 89.01
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 88.6
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 85.16
2ee7_A127 Sperm flagellar protein 1; all alpha protein, CH d 84.82
2d88_A121 Protein mical-3; all alpha, calponin homology doma 84.75
1bhd_A118 Utrophin; calponin homology, actin binding, struct 84.26
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 81.94
3qh9_A81 Liprin-beta-2; coiled-coil, dimerization, structur 80.74
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Back     alignment and structure
Probab=100.00  E-value=1.1e-71  Score=512.96  Aligned_cols=208  Identities=36%  Similarity=0.583  Sum_probs=83.0

Q ss_pred             CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHHHhhCCCCCCCCC
Q 023601            1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYN   80 (280)
Q Consensus         1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~d~n~~g~~~~YD   80 (280)
                      |||||||+|||+||||+|++||||++||||||++|+|+||+|+|||++|||||||||||||||||+|||+|++|  .+||
T Consensus        48 md~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I~k~ipV~kLvkgk~qDNlEFlqWfkkf~d~n~~~--~~Yd  125 (268)
T 2r8u_A           48 MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG--KDYD  125 (268)
T ss_dssp             HHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCCC--CCCC
T ss_pred             HHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccCchhHHHHHHHHHHHHHHcCCC--CCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999998  7999


Q ss_pred             HHHhhhhcCCCCCCCcCCCCCCCCCCC---CCCCCCCCCCCCCccCCCCCCC--CCCCCCCCCCCCCchhHHHHHHHHHH
Q 023601           81 PLERRESCKGGKEASKKSASSQSTNKG---VTAAPKAQSSHNARRHDVTSVN--PTTQASKTSKPSAVVPAYDEQITELK  155 (280)
Q Consensus        81 p~~rR~~~~gg~~~~~~~~~~~~~s~~---a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~qi~eLk  155 (280)
                      |++||+|...|...+...+....+.++   +++++.+++ ..+++...+..+  +++.......+..++.++.+|+++||
T Consensus       126 ~~~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~lk  204 (268)
T 2r8u_A          126 PVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPI-STQRTAAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLK  204 (268)
T ss_dssp             HHHHTC--------------------------------------------------------------------------
T ss_pred             HHHHhcCCCCCCCCCCCcccccCCCCccccccCCCCCCC-cccccCCCCCCCCCCCCCCcccccccHHHHHHHHHHHHHH
Confidence            999998765543221111100000000   000000000 000000000000  00000011123445788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHhccCCCCccchhHH
Q 023601          156 LSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQ  211 (280)
Q Consensus       156 ~~ve~LEkERDFYF~KLRdIEiLcQe~e~e~~~~i~~I~~ILYATeeg~~~~~e~~  211 (280)
                      ++|++|||||||||+||||||||||+++.++.+++++|++|||||||||++|+|++
T Consensus       205 ~~v~~lEkERDFYF~KLRdIEilcQe~~~~~~~~~~~I~~ILYaTeegf~~p~~~~  260 (268)
T 2r8u_A          205 LTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPDEGG  260 (268)
T ss_dssp             --------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhccccCCCCCCCCC
Confidence            99999999999999999999999999988888899999999999999999988754
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Back     alignment and structure
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Back     alignment and structure
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1 Back     alignment and structure
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae} Back     alignment and structure
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C* Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 280
d2qjza1120 a.40.1.1 (A:13-132) Microtubule-associated protein 1e-39
d1wu9a159 a.245.1.1 (A:191-249) Microtubule-associated prote 5e-22
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (334), Expect = 1e-39
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 1   MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEF 60
           MD   PG + + KV F AK E+E IQN+K+LQ  F ++ + K I V+KL+KG+  DN EF
Sbjct: 36  MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEF 95

Query: 61  MQWMKRYCDSVNGGLIHSYNPLERRE 86
           +QW K++ D+   G    Y+P+  R+
Sbjct: 96  VQWFKKFFDANYDG--KDYDPVAARQ 119
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
d2qjza1120 Microtubule-associated protein eb1, N-terminal mic 100.0
d1wu9a159 Microtubule-associated protein EB1, C-terminal dim 99.95
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 96.79
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 88.51
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 83.93
d1aoaa1131 Fimbrin (Plastin), actin-crosslinking domain {Huma 83.01
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 82.8
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 80.83
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-40  Score=271.82  Aligned_cols=85  Identities=44%  Similarity=0.803  Sum_probs=82.8

Q ss_pred             CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHHHhhCCCCCCCCC
Q 023601            1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYN   80 (280)
Q Consensus         1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~d~n~~g~~~~YD   80 (280)
                      ||+||||+|||+||||+|++||||++||||||++|+|+||+|+|||++|||||||||||||||||+|||+|+++  ++||
T Consensus        36 ~d~l~Pg~i~l~kVkf~a~~e~e~~~N~klLq~af~kl~I~k~i~v~kLikgk~qdnleflqWfk~f~d~n~~~--~~Yd  113 (120)
T d2qjza1          36 MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG--KDYD  113 (120)
T ss_dssp             HHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTCCHHHHHHHHHHHHHHHHHHCCC--CCCC
T ss_pred             HHHHCcCcchHhhhccCCCCHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhcccchhHHHHHHHHHHHHHhcCCC--CCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999997  7999


Q ss_pred             HHHhhhh
Q 023601           81 PLERRES   87 (280)
Q Consensus        81 p~~rR~~   87 (280)
                      |.+||+|
T Consensus       114 a~~~R~G  120 (120)
T d2qjza1         114 PVAARQG  120 (120)
T ss_dssp             HHHHTSC
T ss_pred             HHhhhCc
Confidence            9999953
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure