Citrus Sinensis ID: 023674

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MGNSGSHRRHHSNIPPPTPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGYYPPPVPVHGAYGYHHMPSGHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALTKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNAADD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEcccEEEEEccccccEEEEEEEEEcccccEEEEEEcccccccccEEEcccccccccEEEEEccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEcccccccEEEEccccccccHHHHHHHHccccccccccHHHccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHcccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEcccEEEEEccccccccEEEEEEEEccccEEEEEEEEEEEccccEEEccccccccccEEEcccccccEEEccccccccHHHHHcccHEEEEEEEcccEEEEEEEEcEEccccccccccccEEEEEEcccccEEEEccccHHccHHHHHHHHHHHccccccccHHHHHHEEEEcccccc
Coil and Loop (DISEMBL)
mgnsgshrrhhsnippptpppttrqtqsQYVFAaatpypsqypnqyyplypgyypppvpvhgaygyhhmpsghypahppppppppqymehqkavtirndvnvkketlrvepdeenpgqflvaftfdaaapgsitvaffgkedvdcTLIATKEELLKPVTITFqqglgqkfrqpcgtgidlsmfdEIALTKQILWVNRVRYELQEIYGigstvagdetdsgkecviclseprdttvlpcrhmcmcseCAKVLQfqtnrcpicrqPVERLLEIKVNNAADD
Flexible Loop (DISEMBL)
mgnsgshrrhhsnippptpppttRQTQSQYVFAAATPYPSQYPNQYYPLYPGYYPPPVPVHGAYGYHHMPSGHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETlrvepdeenpGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALTKQILWVNRVRYELQEIYGIgstvagdetdsGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPverlleikvnnaadd
Low Complexity Region (SEG)
MGNSGSHRRHHSNIppptpppttRQTQSQYVFAAATpypsqypnqyyplypgyypppvpvhgaygyHHMPSGHYPAHppppppppQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALTKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNAADD
Disordered region (IsUnstruct)
*****************************YVFAAATPYPSQYPNQYYPLYPGYYPPPVPVHGAYGYHH*************************************************QFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALTKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV******
Disordered Region (DISOPRED)
*****************************YVFAA*****************************YGYHHMPS********************KAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALTKQILWVNRVRYELQE***************GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI*VN*****
Disordered Region (DISEMBL)
*************IPPP*********QSQYVFAAATPYPSQYPNQYYPLYPGYYPPPVPVHGAYGYHHMPSGHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALTKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNAADD
Disordered Region (DISPRO)
***************PPTPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGYYPPPVPVHGAYGYHHMPSGHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALTKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNSGSHRRHHSNIPPPTPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGYYPPPVPVHGAYGYHHMPSGHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALTKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNAADD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q9LFH6	299	Probable E3 ubiquitin-pro	yes	no	0.795	0.742	0.520	1e-73
Q9LYW5	337	Probable E3 ubiquitin-pro	no	no	0.942	0.780	0.490	1e-72
Q9S752	388	Probable E3 ubiquitin-pro	no	no	0.709	0.510	0.522	5e-68
Q84ME1	378	Probable E3 ubiquitin-pro	no	no	0.827	0.611	0.403	1e-55
Q8LA32	359	Probable E3 ubiquitin-pro	no	no	0.688	0.534	0.434	6e-53
Q96PX1	679	RING finger protein 157 O	yes	no	0.709	0.291	0.324	9e-26
Q3TEL6	685	RING finger protein 157 O	yes	no	0.709	0.289	0.320	4e-25
Q5XIQ4	533	E3 ubiquitin-protein liga	no	no	0.655	0.343	0.305	4e-24
Q9D074	532	E3 ubiquitin-protein liga	no	no	0.706	0.370	0.3	6e-24
O60291	552	E3 ubiquitin-protein liga	no	no	0.655	0.331	0.301	8e-24

>sp|Q9LFH6|LUL2_ARATH Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana GN=LUL2 PE=2 SV=1

 Score =  276 bits (705), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 152/292 (52%), Positives = 174/292 (59%), Gaps = 70/292 (23%)

Query: 37  PYPSQYPNQYYPLYPGYYPPPVPVHGAYGYHHMPSGHYPAHPPPPPPPPQYMEHQKAVTI 96
           PYP+  PN     Y G YP P      Y Y  M S            P QY+EHQ+AVTI
Sbjct: 21  PYPN--PN---AQYQGNYPSPYQDCARYPYGEMAS------------PVQYVEHQEAVTI 63

Query: 97  RNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLK 156
           RND+N+KKETLR+EPDE+NPG+FL++FTFDA+ PGSITV FF KE  DC LIATKE+L  
Sbjct: 64  RNDINLKKETLRLEPDEQNPGKFLLSFTFDASVPGSITVMFFAKEGKDCNLIATKEDLFP 123

Query: 157 PVTITFQQGLGQKFRQPCGTGIDLSMFDEIAL---------------------------- 188
              ++F +GL Q+F+Q CGTGID S   E  L                            
Sbjct: 124 STQVSFAKGLEQRFKQACGTGIDFSDMSEADLVEANETDVYHVAVKAEVVSEDDHPESGT 183

Query: 189 ----------------------TKQILWVNRVRYELQEIYGIGSTV---AGDETDSGKEC 223
                                  KQILWVN  RY LQEIYGIG+TV     D  + GKEC
Sbjct: 184 PNRQITHVVLEKDHKGEYKARVVKQILWVNGNRYVLQEIYGIGNTVDDNGEDANERGKEC 243

Query: 224 VICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNN 275
           VICLSEPRDTTVLPCRHMCMCS CAK+L+FQTN CPICRQPV+RLLEI VNN
Sbjct: 244 VICLSEPRDTTVLPCRHMCMCSGCAKLLRFQTNLCPICRQPVDRLLEITVNN 295

Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro).
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9LYW5|LUL1_ARATH Probable E3 ubiquitin-protein ligase LUL1 OS=Arabidopsis thaliana GN=LUL1 PE=1 SV=1

 Score =  273 bits (698), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 161/328 (49%), Positives = 191/328 (58%), Gaps = 65/328 (19%)

Query: 8   RRHHSNIPPPTPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGY-YPPPV------PV 60
           RR  SNIPP           +++VFAA  PY +  PN Y   YPG   PPPV      P 
Sbjct: 13  RRQRSNIPPAMETAPLELPPNRFVFAAVPPYLNPNPN-YVDQYPGNCLPPPVTEPPMLPY 71

Query: 61  HGAYGYHHMPSGHYPAHPP------PPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEE 114
           +  + +H+ P+ +   HP       P  PPP Y+ HQKAVTIRNDVN+KK+TL + PD E
Sbjct: 72  NFNHLHHYPPNSYQLPHPLFHGGRYPILPPPTYV-HQKAVTIRNDVNLKKKTLTLIPDPE 130

Query: 115 NPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPC 174
           NP + LV+FTFDA+ PG ITV FF  ED +C L ATKE+ L P+T  F +GLGQKF Q  
Sbjct: 131 NPNRLLVSFTFDASMPGRITVVFFATEDAECNLRATKEDTLPPITFDFGEGLGQKFIQSS 190

Query: 175 GTGIDLSMFDE------------------------------------------------I 186
           GTGIDL+ F +                                                I
Sbjct: 191 GTGIDLTAFKDSELFKEVDTDVFPLAVKAEATPAEEGKSGSTNVQITQVVYTKEKGEIKI 250

Query: 187 ALTKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSE 246
            + KQILWVN+ RYEL EIYGI +TV G  +D GKECV+CLSEPRDTTVLPCRHMCMCS 
Sbjct: 251 EVVKQILWVNKRRYELLEIYGIENTVDG--SDEGKECVVCLSEPRDTTVLPCRHMCMCSG 308

Query: 247 CAKVLQFQTNRCPICRQPVERLLEIKVN 274
           CAK L+FQTN CP+CRQPVE LLEI  N
Sbjct: 309 CAKALRFQTNLCPVCRQPVEMLLEINKN 336

Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9S752|LOFG2_ARATH Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1

 Score =  258 bits (658), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 138/264 (52%), Positives = 168/264 (63%), Gaps = 66/264 (25%)

Query: 71  SGHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAP 130
           +GH  A P P      Y+EHQKAVTIRNDVN+KKE+LR+EPD +NPG+FLV+FTFDA   
Sbjct: 113 AGHMMAQPTP------YVEHQKAVTIRNDVNLKKESLRLEPDPDNPGRFLVSFTFDATVS 166

Query: 131 GSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALTK 190
           G I+V FF KE  DC L ATKE++L P+T+ F++GLGQKF+Q  G+GID S+F+++ L K
Sbjct: 167 GRISVIFFAKESEDCKLTATKEDILPPITLDFEKGLGQKFKQSSGSGIDFSVFEDVELFK 226

Query: 191 ------------------------------------------------QILWVNRVRY-- 200
                                                           +I  V ++ +  
Sbjct: 227 AAADTEIYPLAVKAEAAPSGGENEEEERSGSKNAQITQAVYEKDKGEIKIRVVKQILWVN 286

Query: 201 ----ELQEIYGIGSTVAGDETDS------GKECVICLSEPRDTTVLPCRHMCMCSECAKV 250
               ELQEIYGIG+TV GD+  +      GKECVICLSEPRDTTVLPCRHMCMCS CAKV
Sbjct: 287 GTRYELQEIYGIGNTVEGDDDSADDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKV 346

Query: 251 LQFQTNRCPICRQPVERLLEIKVN 274
           L+FQTNRCPICRQPVERLLEIKV+
Sbjct: 347 LRFQTNRCPICRQPVERLLEIKVH 370

Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro). Required for GLUTAMINE DUMPER 1(GDU1)-induced amino acid secretion and for amino acid homeostasis. Ubiquitinates GDU1 (in vitro).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana GN=LUL3 PE=1 SV=1

 Score =  216 bits (550), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/310 (40%), Positives = 165/310 (53%), Gaps = 79/310 (25%)

Query: 37  PYPSQY-PNQYYPLY-PGYYPPPVPVHGAYGYHHMPSGHYPAHPP----PPP-----PPP 85
           PY   Y  NQYYP   P Y+          GYHH  +G  P   P    P P     PP 
Sbjct: 78  PYGQNYHQNQYYPQQAPPYFT---------GYHH--NGFNPMMRPVYFGPTPVAVMEPPA 126

Query: 86  QYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDC 145
            Y+EHQ A  ++NDVNV K T+R+  D+ NPG +LV+F FDA   GS T+ FFG+E+  C
Sbjct: 127 PYVEHQTAKKVKNDVNVNKATVRLVADDLNPGHYLVSFVFDALFDGSFTIIFFGEEESKC 186

Query: 146 TLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFD--------------------- 184
           T++    E   P+ + FQ+G GQKF Q  GTGIDL  F                      
Sbjct: 187 TIVPHLPEAFPPIKVPFQKGAGQKFLQAPGTGIDLGFFSLDDLSKPSPEEVYPLVISAET 246

Query: 185 ------------------------------EIALTKQILWVNRVRYELQEIYGI------ 208
                                         ++ + KQILW+   RYELQE+YGI      
Sbjct: 247 VISPSSVSEEPLVHKQITQAVLEKTNDGSFKVKVMKQILWIEGERYELQELYGIDNSITQ 306

Query: 209 GSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268
           G+  +G E   GKECVICL+EP+DT V+PCRH+C+CS+CA+ L+FQTN+CPICRQP+  L
Sbjct: 307 GTAASGLEDTGGKECVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHEL 366

Query: 269 LEIKVNNAAD 278
           ++IKV ++ +
Sbjct: 367 VKIKVESSDE 376

Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LA32|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana GN=LUL4 PE=2 SV=1

 Score =  207 bits (527), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 107/246 (43%), Positives = 143/246 (58%), Gaps = 54/246 (21%)

Query: 87  YMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCT 146
           Y+E Q A  +RNDVNV ++T+R+E D+  PG  LV+F FDA   GS T+ FF KE+ +CT
Sbjct: 112 YLEQQNAKKVRNDVNVHRDTVRLEVDDLVPGHHLVSFVFDALFDGSFTITFFAKEEPNCT 171

Query: 147 LIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMF--DEIA----------------- 187
           +I    E+  P    FQ+G GQKF QP GTG DLS F  D+++                 
Sbjct: 172 IIPQFPEVYSPTRFHFQKGPGQKFLQPSGTGTDLSFFVLDDLSKPLEEDVYPLVISAETI 231

Query: 188 --------------------------------LTKQILWVNRVRYELQEIYGI---GSTV 212
                                           + KQILW+  VRYEL+E+YG    G+  
Sbjct: 232 ISPNSISEQSSVHKQVTQAVLEKDNDGSFKVKVVKQILWIEGVRYELRELYGSTTQGAAS 291

Query: 213 AGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 272
             DE+ SG ECVIC++E +DT VLPCRH+CMCS+CAK L+ Q+N+CPICRQP+E LLEIK
Sbjct: 292 GLDESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEIK 351

Query: 273 VNNAAD 278
           +N++ +
Sbjct: 352 MNSSDE 357

Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q96PX1|RN157_HUMAN RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=1 SV=3

 Score =  117 bits (293), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 130/268 (48%), Gaps = 70/268 (26%)

Query: 72  GHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRV---EPDEENPGQ--------FL 120
           G+ P   P   PPPQ    +   T+R+ VN++K+TLR+     + ++PG+        + 
Sbjct: 64  GNRPVVFPYAAPPPQ----EPVKTLRSLVNIRKDTLRLVKCAEEVKSPGEEASKAKVHYN 119

Query: 121 VAFTFDAAAPGSITVAFFGKEDVDCTLIAT--KEELLKPVTITFQQGLGQKFRQPCGT-- 176
           V FTFD  A  +IT+ +   E+    + +   K+  L+  T+ +++G+ Q+F  P  T  
Sbjct: 120 VEFTFDTDARVAITIYYQATEEFQNGIASYIPKDNSLQSETVQYKRGVCQQFCLPSHTVD 179

Query: 177 ---------GIDL----------SMFDE------------------------IALTKQIL 193
                    G DL          ++ DE                        +   KQ  
Sbjct: 180 PSEWAEEELGFDLDREVYPLVVHAVVDEGDEYFGHCHVLLGTFEKHTDGTFCVKPLKQKQ 239

Query: 194 WVNRVRYELQEIYGI-------GSTVAGDE-TDSGKECVICLSEPRDTTVLPCRHMCMCS 245
            V+ V Y LQEIYGI        S VA DE +D+  ECV+CLS+ RDT +LPCRH+C+C+
Sbjct: 240 VVDGVSYLLQEIYGIENKYNTQDSKVAEDEVSDNSAECVVCLSDVRDTLILPCRHLCLCN 299

Query: 246 ECAKVLQFQTNRCPICRQPVERLLEIKV 273
            CA  L++Q N CPICR P   LL+I+ 
Sbjct: 300 TCADTLRYQANNCPICRLPFRALLQIRA 327

Homo sapiens (taxid: 9606)

>sp|Q3TEL6|RN157_MOUSE RING finger protein 157 OS=Mus musculus GN=Rnf157 PE=2 SV=2

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 128/268 (47%), Gaps = 70/268 (26%)

Query: 72  GHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLR-------VEPDEENPGQ----FL 120
           G+ P   P   PPPQ    +   T+R+ +N++K+TLR       V+   E  G+    + 
Sbjct: 64  GNRPVAFPYAAPPPQ----EPVKTLRSLINIRKDTLRLVKCAEEVKSHGEEAGKAKVHYN 119

Query: 121 VAFTFDAAAPGSITVAFFGKEDVDCTLIAT--KEELLKPVTITFQQGLGQKFRQPCGT-- 176
           V FTFD  A  +IT+ +   E+    + +   K+  L+  T+ +++G+ Q+F  P  T  
Sbjct: 120 VEFTFDTDARVAITIYYQATEEFQNGIASYIPKDNSLQSETVHYKRGVFQQFCLPSHTVD 179

Query: 177 ---------GIDL----------SMFDE------------------------IALTKQIL 193
                    G DL          ++ DE                        +   KQ  
Sbjct: 180 PSEWAEEELGFDLDREVYPLVVHAVVDEGDEYFGHCHVLLGTFEKHPDGTFCVKPLKQKQ 239

Query: 194 WVNRVRYELQEIYGI-------GSTVAGDE-TDSGKECVICLSEPRDTTVLPCRHMCMCS 245
            V+ V Y LQEIYGI        S VA D+ +D+  ECV+CLS+ RDT +LPCRH+C+C+
Sbjct: 240 VVDGVSYLLQEIYGIENKYNTQDSKVAEDDVSDNSAECVVCLSDVRDTLILPCRHLCLCN 299

Query: 246 ECAKVLQFQTNRCPICRQPVERLLEIKV 273
            CA  L++Q N CPICR P   LL+I+ 
Sbjct: 300 TCADTLRYQANNCPICRLPFRALLQIRA 327

Mus musculus (taxid: 10090)

>sp|Q5XIQ4|MGRN1_RAT E3 ubiquitin-protein ligase MGRN1 OS=Rattus norvegicus GN=Mgrn1 PE=2 SV=1

 Score =  112 bits (279), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 120/252 (47%), Gaps = 69/252 (27%)

Query: 90  HQKAVTIRNDVNVKKETLRV---EPDEENPGQ--------FLVAFTFDAAAPGSITVAFF 138
           H+   T+R+ VN++K++LR+   + D ++P +        + + FTFDA A  +IT+   
Sbjct: 79  HEPVKTLRSLVNIRKDSLRLVRYKDDTDSPTEDGEKPRVLYSLEFTFDADARVAITIYCQ 138

Query: 139 GKEDV--DCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALT------- 189
             E+     T+ + K   L+  T+ +++G+ Q+F  P    ID S + +  L        
Sbjct: 139 AVEEFVNGMTVYSCKNPSLQSETVHYKRGVSQQFSLP-SFKIDFSEWKDDELNFDLDRGV 197

Query: 190 -----------------------------------------KQILWVNRVRYELQEIYGI 208
                                                    KQ   V+RV Y LQEIYGI
Sbjct: 198 FPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHVDGSFSVKPLKQKQIVDRVSYLLQEIYGI 257

Query: 209 GSTV------AGDE-TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPIC 261
            +        + DE +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPIC
Sbjct: 258 ENKNNQETKPSDDENSDNSSECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPIC 317

Query: 262 RQPVERLLEIKV 273
           R P   LL+I+ 
Sbjct: 318 RLPFRALLQIRA 329

E3 ubiquitin-protein ligase. Mediates TSG101 monoubiquitination at multiple sites. Plays a role in the regulation of endosome-to-lysosome trafficking. Impairs MC1R- and MC4R-signaling by competing with GNAS-binding to MCRs and inhibiting agonist-induced cAMP production. Does not inhibit ADRB2-signaling. Does not promote MC1R ubiquitination.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9D074|MGRN1_MOUSE E3 ubiquitin-protein ligase MGRN1 OS=Mus musculus GN=Mgrn1 PE=1 SV=2

 Score =  111 bits (277), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 73/270 (27%)

Query: 72  GHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRV---EPDEENPGQ--------FL 120
           G  P   P   P P    H+   T+R+ VN++K++LR+   + D ++P +        + 
Sbjct: 64  GSRPVQFPYVTPAP----HEPVKTLRSLVNIRKDSLRLVRYKEDADSPTEDGEKPRVLYS 119

Query: 121 VAFTFDAAAPGSITVAFFGKEDV--DCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGI 178
           + FTFDA A  +IT+     E++     + + K   L+  T+ +++G+ Q+F  P    I
Sbjct: 120 LEFTFDADARVAITIYCQAVEELVNGVAVYSCKNPSLQSETVHYKRGVSQQFSLP-SFKI 178

Query: 179 DLSMFDEIALT------------------------------------------------K 190
           D S + +  L                                                 K
Sbjct: 179 DFSEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHVDGSFSVKPLK 238

Query: 191 QILWVNRVRYELQEIYGIGSTV------AGDE-TDSGKECVICLSEPRDTTVLPCRHMCM 243
           Q   V+RV Y LQEIYGI +        + DE +D+  ECV+CLS+ RDT +LPCRH+C+
Sbjct: 239 QKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSSECVVCLSDLRDTLILPCRHLCL 298

Query: 244 CSECAKVLQFQTNRCPICRQPVERLLEIKV 273
           C+ CA  L++Q N CPICR P   LL+I+ 
Sbjct: 299 CTSCADTLRYQANNCPICRLPFRALLQIRA 328

E3 ubiquitin-protein ligase. Mediates TSG101 monoubiquitination at multiple sites. Plays a role in the regulation of endosome-to-lysosome trafficking. Impairs MC1R- and MC4R-signaling by competing with GNAS-binding to MCRs and inhibiting agonist-induced cAMP production. Does not inhibit ADRB2-signaling. Does not promote MC1R ubiquitination.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O60291|MGRN1_HUMAN E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2

 Score =  110 bits (276), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 119/252 (47%), Gaps = 69/252 (27%)

Query: 90  HQKAVTIRNDVNVKKETLRV---EPDEENPGQ--------FLVAFTFDAAAPGSITVAFF 138
           H+   T+R+ VN++K++LR+   + D ++P +        + + FTFDA A  +IT+   
Sbjct: 78  HEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSLEFTFDADARVAITIYCQ 137

Query: 139 GKEDV--DCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALT------- 189
             E+      + + K   L+  T+ +++G+ Q+F  P    ID S + +  L        
Sbjct: 138 ASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLP-SFKIDFSEWKDDELNFDLDRGV 196

Query: 190 -----------------------------------------KQILWVNRVRYELQEIYGI 208
                                                    KQ   V+RV Y LQEIYGI
Sbjct: 197 FPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQKQIVDRVSYLLQEIYGI 256

Query: 209 GSTV------AGDE-TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPIC 261
            +        + DE +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPIC
Sbjct: 257 ENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPIC 316

Query: 262 RQPVERLLEIKV 273
           R P   LL+I+ 
Sbjct: 317 RLPFRALLQIRA 328

E3 ubiquitin-protein ligase. Mediates monoubiquitination at multiple sites of TSG101 in the presence of UBE2D1, but not of UBE2G1, nor UBE2H. Plays a role in the regulation of endosome-to-lysosome trafficking. Impairs MC1R- and MC4R-signaling by competing with GNAS-binding to MCRs and inhibiting agonist-induced cAMP production. Does not inhibit ADRB2-signaling. Does not promote MC1R ubiquitination.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
297746246	383	unnamed protein product [Vitis vinifera]	0.942	0.686	0.562	6e-83
225435295	349	PREDICTED: E3 ubiquitin-protein ligase M	0.942	0.753	0.559	1e-82
108707230	430	zinc finger family protein, putative, ex	0.896	0.581	0.518	4e-82
218184262	425	hypothetical protein OsI_32999 [Oryza sa	0.691	0.454	0.593	4e-77
115481426	425	Os10g0204100 [Oryza sativa Japonica Grou	0.691	0.454	0.593	5e-77
225439970	362	PREDICTED: E3 ubiquitin-protein ligase M	0.881	0.679	0.526	5e-77
297833744	385	hypothetical protein ARALYDRAFT_478299 [	0.727	0.527	0.556	2e-74
297600676	290	Os03g0254900 [Oryza sativa Japonica Grou	0.702	0.675	0.566	6e-74
449440089	368	PREDICTED: probable E3 ubiquitin-protein	0.881	0.668	0.483	2e-73
224140185	283	predicted protein [Populus trichocarpa]	0.741	0.731	0.555	5e-72

>gi|297746246|emb|CBI16302.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 184/327 (56%), Positives = 208/327 (63%), Gaps = 64/327 (19%)

Query: 16  PPTPPPTTRQTQSQYVFAAATPYPSQYPNQ---YYPLYPGYYPP-PVPVHGAYGYHHMPS 71
           PP   P    T ++YVFAAAT Y S YPN    YY  Y G+YPP PVP+ G+Y   H   
Sbjct: 56  PPQLSPQPEITANRYVFAAATAYTSAYPNPNQPYYYNYNGHYPPVPVPLSGSYTRLHRAG 115

Query: 72  GHYP----AHPP---PPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFT 124
           G  P     H P    PPPP  Y+EHQKA+TIRNDVN+KKETLRVEPDEENPG+FLVAFT
Sbjct: 116 GAIPNWVGGHQPCGVAPPPPAPYVEHQKAITIRNDVNIKKETLRVEPDEENPGKFLVAFT 175

Query: 125 FDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFD 184
           FDA A GSITV FFGKE +   LI  KE +++PVT++FQQGL QKF+QP GTGID SMF+
Sbjct: 176 FDATAAGSITVVFFGKEGISGDLITVKEGVIEPVTVSFQQGLDQKFKQPSGTGIDFSMFE 235

Query: 185 EIAL---------------------------------------------------TKQIL 193
           E  L                                                    KQIL
Sbjct: 236 ETELMQESDIKVCPLLVKAGAYPLDHSQSEGNLTGNSQITQAVFEKEKGVQQVRVVKQIL 295

Query: 194 WVNRVRYELQEIYGIGSTV--AGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVL 251
           W   +RYELQEI+GIG++V    D TDSGKECVICLSEPRDTTVLPCRHMCMC  CAKVL
Sbjct: 296 WAEGMRYELQEIFGIGNSVDDNADGTDSGKECVICLSEPRDTTVLPCRHMCMCGGCAKVL 355

Query: 252 QFQTNRCPICRQPVERLLEIKVNNAAD 278
           +FQ NRCPICRQPVE+LLEIKVNN +D
Sbjct: 356 RFQMNRCPICRQPVEQLLEIKVNNKSD 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435295|ref|XP_002285111.1| PREDICTED: E3 ubiquitin-protein ligase MGRN1 [Vitis vinifera]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 183/327 (55%), Positives = 209/327 (63%), Gaps = 64/327 (19%)

Query: 16  PPTPPPTTRQTQSQYVFAAATPYPSQYPNQ---YYPLYPGYYPP-PVPVHGAYGYHHMPS 71
           PP   P    T ++YVFAAAT Y S YPN    YY  Y G+YPP PVP+ G+Y   H   
Sbjct: 22  PPQLSPQPEITANRYVFAAATAYTSAYPNPNQPYYYNYNGHYPPVPVPLSGSYTRLHRAG 81

Query: 72  GHYP----AHPP---PPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFT 124
           G  P     H P    PPPP  Y+EHQKA+TIRNDVN+KKETLRVEPDEENPG+FLVAFT
Sbjct: 82  GAIPNWVGGHQPCGVAPPPPAPYVEHQKAITIRNDVNIKKETLRVEPDEENPGKFLVAFT 141

Query: 125 FDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFD 184
           FDA A GSITV FFGKE +   LI  KE +++PVT++FQQGL QKF+QP GTGID SMF+
Sbjct: 142 FDATAAGSITVVFFGKEGISGDLITVKEGVIEPVTVSFQQGLDQKFKQPSGTGIDFSMFE 201

Query: 185 E---------------------------------------------------IALTKQIL 193
           E                                                   + + KQIL
Sbjct: 202 ETELMQESDIKVCPLLVKAGAYPLDHSQSEGNLTGNSQITQAVFEKEKGVQQVRVVKQIL 261

Query: 194 WVNRVRYELQEIYGIGSTV--AGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVL 251
           W   +RYELQEI+GIG++V    D TDSGKECVICLSEPRDTTVLPCRHMCMC  CAKVL
Sbjct: 262 WAEGMRYELQEIFGIGNSVDDNADGTDSGKECVICLSEPRDTTVLPCRHMCMCGGCAKVL 321

Query: 252 QFQTNRCPICRQPVERLLEIKVNNAAD 278
           +FQ NRCPICRQPVE+LLEIKVNN +D
Sbjct: 322 RFQMNRCPICRQPVEQLLEIKVNNKSD 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108707230|gb|ABF95025.1| zinc finger family protein, putative, expressed [Oryza sativa Japonica Group] gi|215712342|dbj|BAG94469.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 178/343 (51%), Positives = 208/343 (60%), Gaps = 93/343 (27%)

Query: 30  YVFAAATPYPS-QYPN----QYYPLYPGYYPPP----VPVHGAYGYHHM----------- 69
           YVFAAATPYP  QY N    +YYP Y  YYPPP    VP+   Y +HH            
Sbjct: 53  YVFAAATPYPPPQYTNPNLPRYYPQYGNYYPPPPSLQVPLPAPYDHHHRGGGAGVPAGGE 112

Query: 70  --PSGH---YPAHPP----------PPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEE 114
             PS H   YP  P            P  P  Y+EHQKA+TIRNDVN+KKETLR+EPDEE
Sbjct: 113 FPPSAHPQHYPGWPGVSGRPHPCGLQPAMPTPYVEHQKAITIRNDVNLKKETLRIEPDEE 172

Query: 115 NPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPC 174
            PG+FLVAFTFDA   GS+TV FF KE+++C L A KE+L+KPVT++F++GLGQKFRQP 
Sbjct: 173 CPGRFLVAFTFDATLAGSMTVYFFAKEELNCNLTAVKEDLIKPVTVSFKEGLGQKFRQPS 232

Query: 175 GTG-------------------------------------------------IDLSMFD- 184
           GTG                                                 I  ++F+ 
Sbjct: 233 GTGINFSVFEDSELLKQGDMDVYPLAVKAETTMPVDQKLEGEDQKMKTPNSQITQALFEK 292

Query: 185 ------EIALTKQILWVNRVRYELQEIYGIGSTVAGDE--TDSGKECVICLSEPRDTTVL 236
                 ++ +  QILWVN  RYELQEIYGIG++V GD    D GKECVICLSEPRDTTVL
Sbjct: 293 KESGDYQVRVASQILWVNGTRYELQEIYGIGNSVEGDADANDPGKECVICLSEPRDTTVL 352

Query: 237 PCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNAADD 279
           PCRHMCMCSECAKVL++QT RCPICRQPVERLLEIKVNN A++
Sbjct: 353 PCRHMCMCSECAKVLRYQTTRCPICRQPVERLLEIKVNNKAEE 395

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218184262|gb|EEC66689.1| hypothetical protein OsI_32999 [Oryza sativa Indica Group]

 Score =  293 bits (751), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 149/251 (59%), Positives = 171/251 (68%), Gaps = 58/251 (23%)

Query: 87  YMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCT 146
           Y+EHQKAVTIRNDVN+KKETLRVEPD+E PG+FL+ FTFDA   GS+TV FF KE+++C 
Sbjct: 149 YVEHQKAVTIRNDVNLKKETLRVEPDDECPGRFLITFTFDATVAGSMTVYFFAKEELNCN 208

Query: 147 LIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLS------MFDE--------------- 185
           L ATKE+LLKPVT+TF++GLGQKFRQP GTGID S      +F E               
Sbjct: 209 LTATKEDLLKPVTVTFKEGLGQKFRQPSGTGIDFSLFEDAELFKEGEMDVYPLAVKAETT 268

Query: 186 -----------------------------------IALTKQILWVNRVRYELQEIYGIGS 210
                                              + + KQILWVN  RYELQEIYGIG+
Sbjct: 269 FSIGQFSEGEEQKSQTPNSQITQAVFERKENGDYHVRVVKQILWVNGTRYELQEIYGIGN 328

Query: 211 TVAGDE--TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268
           +V GD    D GKECVICLSEPRDTTVLPCRHMCMCSECAKVL++QTNRCPICRQPVERL
Sbjct: 329 SVEGDTEGNDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVERL 388

Query: 269 LEIKVNNAADD 279
           LEIKVNN  ++
Sbjct: 389 LEIKVNNKGEE 399

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115481426|ref|NP_001064306.1| Os10g0204100 [Oryza sativa Japonica Group] gi|19225030|gb|AAL86506.1|AC099040_10 putative hydroxyproline-rich glycoprotein [Oryza sativa Japonica Group] gi|20279471|gb|AAM18751.1|AC099325_7 unknown protein [Oryza sativa Japonica Group] gi|31430853|gb|AAP52712.1| RING zinc finger protein, putative, expressed [Oryza sativa Japonica Group] gi|113638915|dbj|BAF26220.1| Os10g0204100 [Oryza sativa Japonica Group] gi|222612586|gb|EEE50718.1| hypothetical protein OsJ_31005 [Oryza sativa Japonica Group]

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 149/251 (59%), Positives = 171/251 (68%), Gaps = 58/251 (23%)

Query: 87  YMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCT 146
           Y+EHQKAVTIRNDVN+KKETLRVEPD+E PG+FL+ FTFDA   GS+TV FF KE+++C 
Sbjct: 149 YVEHQKAVTIRNDVNLKKETLRVEPDDECPGRFLITFTFDATVAGSMTVYFFAKEELNCN 208

Query: 147 LIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLS------MFDE--------------- 185
           L ATKE+LLKPVT+TF++GLGQKFRQP GTGID S      +F E               
Sbjct: 209 LTATKEDLLKPVTVTFKEGLGQKFRQPSGTGIDFSLFEDAELFKEGEMDVYPLAVKAETT 268

Query: 186 -----------------------------------IALTKQILWVNRVRYELQEIYGIGS 210
                                              + + KQILWVN  RYELQEIYGIG+
Sbjct: 269 FSIGQFSEGEEQKSQTPNSQITQAVFERKENGDYHVRVVKQILWVNGTRYELQEIYGIGN 328

Query: 211 TVAGDE--TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268
           +V GD    D GKECVICLSEPRDTTVLPCRHMCMCSECAKVL++QTNRCPICRQPVERL
Sbjct: 329 SVEGDTEGNDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVERL 388

Query: 269 LEIKVNNAADD 279
           LEIKVNN  ++
Sbjct: 389 LEIKVNNKGEE 399

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439970|ref|XP_002280999.1| PREDICTED: E3 ubiquitin-protein ligase MGRN1-like [Vitis vinifera]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 177/336 (52%), Positives = 202/336 (60%), Gaps = 90/336 (26%)

Query: 26  TQSQYVFAAATPYPSQYPN----QYYPLYPGYY----------------------PPPVP 59
           T +QYVFAA  PYP+QYPN    QYY  YPG+Y                      PPP  
Sbjct: 35  TPNQYVFAA--PYPTQYPNPNPPQYYQ-YPGFYPPPPAAMPVPLPAPYDHHHRGGPPP-- 89

Query: 60  VHGAYGYHHMPSGHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQF 119
            H    + +  +G Y   P  PP  P Y+EHQKAVTIRNDVN+KKETLR+EPDEE+PG+F
Sbjct: 90  -HMDPAHANFVAGRYSCGPVVPPHAP-YVEHQKAVTIRNDVNLKKETLRLEPDEEHPGRF 147

Query: 120 LVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGID 179
           LVAFTFDA  PGSIT+ FF KE  DC+L   KE  L+PVT+ FQQGLGQKFRQP GTGID
Sbjct: 148 LVAFTFDATVPGSITIIFFAKEGEDCSLSPMKEN-LEPVTVHFQQGLGQKFRQPTGTGID 206

Query: 180 LSMFDEIALTK------------------------------------------------Q 191
            S F+E  L K                                                Q
Sbjct: 207 FSTFEESELLKEGDMDVYPLEVKAEASPINQIGADGNPIPGTMNSQITKAVFEKEKGEYQ 266

Query: 192 ILWVNRV------RYELQEIYGIGSTVAG--DETDSGKECVICLSEPRDTTVLPCRHMCM 243
           +  V ++      RYELQEIYGIG++V G  D  D GKECVICLSEPRDTTVLPCRHMCM
Sbjct: 267 VRVVKQILWVNGMRYELQEIYGIGNSVDGDFDSNDPGKECVICLSEPRDTTVLPCRHMCM 326

Query: 244 CSECAKVLQFQTNRCPICRQPVERLLEIKVNNAADD 279
           CS CAKVL+FQT+RCPICRQ VERLLEIKV+N +DD
Sbjct: 327 CSGCAKVLRFQTDRCPICRQLVERLLEIKVSNGSDD 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833744|ref|XP_002884754.1| hypothetical protein ARALYDRAFT_478299 [Arabidopsis lyrata subsp. lyrata] gi|297330594|gb|EFH61013.1| hypothetical protein ARALYDRAFT_478299 [Arabidopsis lyrata subsp. lyrata]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/264 (55%), Positives = 169/264 (64%), Gaps = 61/264 (23%)

Query: 69  MPSGHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAA 128
           M    +  H   PP P  Y+EHQKAVTIRNDVN+KKETLR+EPD +NPG+FLV+FTFDA 
Sbjct: 105 MARYSFAGHMMAPPTP--YVEHQKAVTIRNDVNLKKETLRLEPDPDNPGRFLVSFTFDAT 162

Query: 129 APGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIAL 188
             G I+V FF KE  DC L ATKE++L P+T+ F++GLGQKF+Q  G+GID S+F+++ L
Sbjct: 163 VSGRISVIFFAKESEDCNLTATKEDILPPITLDFEKGLGQKFKQSSGSGIDFSVFEDVEL 222

Query: 189 -----------------------------------------------------TKQILWV 195
                                                                 KQILWV
Sbjct: 223 FEAANTDIYPLAVKAEAAPSGENEEERLGSKKKNAQITQAVYEKDKGEIKIRVVKQILWV 282

Query: 196 NRVRYELQEIYGIGSTVAGDE------TDSGKECVICLSEPRDTTVLPCRHMCMCSECAK 249
           N  RYELQEIYGIG+TV GDE       D GKECVICLSEPRDTTVLPCRHMCMCS CAK
Sbjct: 283 NGTRYELQEIYGIGNTVEGDEDSADDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAK 342

Query: 250 VLQFQTNRCPICRQPVERLLEIKV 273
           VL+FQTNRCPICRQPVERLLEIKV
Sbjct: 343 VLRFQTNRCPICRQPVERLLEIKV 366

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297600676|ref|NP_001049589.2| Os03g0254900 [Oryza sativa Japonica Group] gi|125583739|gb|EAZ24670.1| hypothetical protein OsJ_08439 [Oryza sativa Japonica Group] gi|255674380|dbj|BAF11503.2| Os03g0254900 [Oryza sativa Japonica Group]

 Score =  283 bits (724), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 144/254 (56%), Positives = 171/254 (67%), Gaps = 58/254 (22%)

Query: 84  PPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDV 143
           P  Y+EHQKA+TIRNDVN+KKETLR+EPDEE PG+FLVAFTFDA   GS+TV FF KE++
Sbjct: 2   PTPYVEHQKAITIRNDVNLKKETLRIEPDEECPGRFLVAFTFDATLAGSMTVYFFAKEEL 61

Query: 144 DCTLIATKEELLKPVTITFQQGLGQKFRQPCGTG-------------------------- 177
           +C L A KE+L+KPVT++F++GLGQKFRQP GTG                          
Sbjct: 62  NCNLTAVKEDLIKPVTVSFKEGLGQKFRQPSGTGINFSVFEDSELLKQGDMDVYPLAVKA 121

Query: 178 -----------------------IDLSMFD-------EIALTKQILWVNRVRYELQEIYG 207
                                  I  ++F+       ++ +  QILWVN  RYELQEIYG
Sbjct: 122 ETTMPVDQKLEGEDQKMKTPNSQITQALFEKKESGDYQVRVASQILWVNGTRYELQEIYG 181

Query: 208 IGSTVAGDE--TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 265
           IG++V GD    D GKECVICLSEPRDTTVLPCRHMCMCSECAKVL++QT RCPICRQPV
Sbjct: 182 IGNSVEGDADANDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPICRQPV 241

Query: 266 ERLLEIKVNNAADD 279
           ERLLEIKVNN A++
Sbjct: 242 ERLLEIKVNNKAEE 255

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440089|ref|XP_004137817.1| PREDICTED: probable E3 ubiquitin-protein ligase LOG2-like [Cucumis sativus] gi|449513666|ref|XP_004164388.1| PREDICTED: probable E3 ubiquitin-protein ligase LOG2-like [Cucumis sativus]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 165/341 (48%), Positives = 195/341 (57%), Gaps = 95/341 (27%)

Query: 26  TQSQYVFAAATPYPSQYPNQ-------------------------------YYPLYPGYY 54
           T ++YVFAAATPYP+QYPN                                Y   + G +
Sbjct: 35  TSNRYVFAAATPYPTQYPNHPNHPPPYYQYPGYFPPPPGPPPSMPMPLPAPYDHHHRGGH 94

Query: 55  PPPVPVHGAYGYHHMPSGHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEE 114
           P   P H          G YP  PP PP  P Y+EHQKAVTIRNDVN+KKETL+VEPDEE
Sbjct: 95  PQMDPAHWV-------GGRYPYGPPMPPQTP-YVEHQKAVTIRNDVNLKKETLKVEPDEE 146

Query: 115 NPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPC 174
           NPGQFLV+FTFDA   GSIT+ FF KE  DC L   KE++ +P+T+ F+QGLGQKFRQP 
Sbjct: 147 NPGQFLVSFTFDATVAGSITIFFFAKEGEDCNLTPVKEDIFQPITVHFEQGLGQKFRQPS 206

Query: 175 GTGIDLSMFDEIALTK-------------------------------------------- 190
           GTGID S F+E    K                                            
Sbjct: 207 GTGIDFSKFEESEFLKVNDTDVYPLVVKAEASTDTQTGPDGTPVPDPMNSQITQAVFEKD 266

Query: 191 ----QILWVNRVRY------ELQEIYGIGSTVAG--DETDSGKECVICLSEPRDTTVLPC 238
               Q+  + ++ +      ELQEIYGIG++V G  D  D GKECVICLSEPRDTTVLPC
Sbjct: 267 KGEYQVRVLKQILWVNGMRYELQEIYGIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPC 326

Query: 239 RHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNAADD 279
           RHMCMCS CAKVL+FQTNRCPICRQPV+RLLEI+V+N  ++
Sbjct: 327 RHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEE 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140185|ref|XP_002323465.1| predicted protein [Populus trichocarpa] gi|222868095|gb|EEF05226.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (707), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 149/268 (55%), Positives = 169/268 (63%), Gaps = 61/268 (22%)

Query: 68  HMPSGHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDA 127
           H   G YP  P P P    Y+EHQK VTIR+DVN+KKE+LR+EPDEENPG +LV FTFDA
Sbjct: 21  HWVGGRYPVMPQPAP----YVEHQKTVTIRSDVNLKKESLRLEPDEENPGSYLVTFTFDA 76

Query: 128 AAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDL------- 180
              GSIT+ FF KE  DC L  TK +L  PVT+ F QGLGQKFRQP GTGID        
Sbjct: 77  TVAGSITIIFFAKEGEDCVLTPTKADL-PPVTVNFPQGLGQKFRQPSGTGIDFTLFEGKE 135

Query: 181 -----------------------------------------SMFD------EIALTKQIL 193
                                                    ++F+      ++ + KQIL
Sbjct: 136 LLKEGEMDAYPLAVKAEASPANHNGTEGNQMSEPMNSQVTQAIFEKEKGEYQVRVMKQIL 195

Query: 194 WVNRVRYELQEIYGIGSTVAGD--ETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVL 251
           WVN  RYELQEIYGIG++V GD    D GKECVICLSEPRDTTVLPCRHMCMCS CAKVL
Sbjct: 196 WVNGRRYELQEIYGIGNSVEGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVL 255

Query: 252 QFQTNRCPICRQPVERLLEIKVNNAADD 279
           +FQTNRCPICR PV+RLLEIKVNNA D+
Sbjct: 256 RFQTNRCPICRHPVDRLLEIKVNNAPDE 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2075069	388	LOG2 "LOSS OF GDU 2" [Arabidop	0.333	0.239	0.772	1.8e-74
TAIR|locus:2084026	299	LUL2 "LOG2-LIKE UBIQUITIN LIGA	0.315	0.294	0.769	8.6e-71
TAIR|locus:2143493	337	LUL1 "LOG2-LIKE UBIQUITIN LIGA	0.315	0.261	0.744	4.8e-66
TAIR|locus:2082440	359	LUL4 "LOG2-LIKE UBIQUITIN LIGA	0.483	0.376	0.471	6.9e-31
TAIR|locus:2179594	378	LUL3 "LOG2-LIKE UBIQUITIN LIGA	0.526	0.388	0.413	3e-30
UNIPROTKB|K7EIM7	332	MGRN1 "E3 ubiquitin-protein li	0.290	0.243	0.522	4.1e-28
UNIPROTKB|E1C804	536	MGRN1 "Uncharacterized protein	0.290	0.151	0.522	5.4e-28
FB|FBgn0030514	789	CG9941 [Drosophila melanogaste	0.297	0.105	0.516	3.2e-27
RGD|1311862	533	Mgrn1 "mahogunin ring finger 1	0.290	0.151	0.522	3.6e-27
UNIPROTKB|Q5XIQ4	533	Mgrn1 "E3 ubiquitin-protein li	0.290	0.151	0.522	3.6e-27

TAIR|locus:2075069 LOG2 "LOSS OF GDU 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
 Identities = 78/101 (77%), Positives = 84/101 (83%)

Query:   185 EIALTKQILWVNRVRYELQEIYGIGSTVAGDE------TDSGKECVICLSEPRDTTVLPC 238
             +I + KQILWVN  RYELQEIYGIG+TV GD+       D GKECVICLSEPRDTTVLPC
Sbjct:   275 KIRVVKQILWVNGTRYELQEIYGIGNTVEGDDDSADDANDPGKECVICLSEPRDTTVLPC 334

Query:   239 RHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV--NNAA 277
             RHMCMCS CAKVL+FQTNRCPICRQPVERLLEIKV  NN +
Sbjct:   335 RHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVHGNNGS 375

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0080144 "amino acid homeostasis" evidence=IGI

TAIR|locus:2084026 LUL2 "LOG2-LIKE UBIQUITIN LIGASE2" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
 Identities = 70/91 (76%), Positives = 76/91 (83%)

Query:   188 LTKQILWVNRVRYELQEIYGIGSTV---AGDETDSGKECVICLSEPRDTTVLPCRHMCMC 244
             + KQILWVN  RY LQEIYGIG+TV     D  + GKECVICLSEPRDTTVLPCRHMCMC
Sbjct:   205 VVKQILWVNGNRYVLQEIYGIGNTVDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMC 264

Query:   245 SECAKVLQFQTNRCPICRQPVERLLEIKVNN 275
             S CAK+L+FQTN CPICRQPV+RLLEI VNN
Sbjct:   265 SGCAKLLRFQTNLCPICRQPVDRLLEITVNN 295

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2143493 LUL1 "LOG2-LIKE UBIQUITIN LIGASE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
 Identities = 67/90 (74%), Positives = 75/90 (83%)

Query:   185 EIALTKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMC 244
             +I + KQILWVN+ RYEL EIYGI +TV G  +D GKECV+CLSEPRDTTVLPCRHMCMC
Sbjct:   249 KIEVVKQILWVNKRRYELLEIYGIENTVDG--SDEGKECVVCLSEPRDTTVLPCRHMCMC 306

Query:   245 SECAKVLQFQTNRCPICRQPVERLLEIKVN 274
             S CAK L+FQTN CP+CRQPVE LLEI  N
Sbjct:   307 SGCAKALRFQTNLCPVCRQPVEMLLEINKN 336

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2082440 LUL4 "LOG2-LIKE UBIQUITIN LIGASE4" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 66/140 (47%), Positives = 97/140 (69%)

Query:   140 KEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALTKQILWVNRVR 199
             +EDV   L+ + E ++ P +I+ Q  + ++  Q      +   F ++ + KQILW+  VR
Sbjct:   218 EEDV-YPLVISAETIISPNSISEQSSVHKQVTQAVLEKDNDGSF-KVKVVKQILWIEGVR 275

Query:   200 YELQEIYGI---GSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTN 256
             YEL+E+YG    G+    DE+ SG ECVIC++E +DT VLPCRH+CMCS+CAK L+ Q+N
Sbjct:   276 YELRELYGSTTQGAASGLDESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSN 335

Query:   257 RCPICRQPVERLLEIKVNNA 276
             +CPICRQP+E LLEIK+N++
Sbjct:   336 KCPICRQPIEELLEIKMNSS 355

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2179594 LUL3 "LOG2-LIKE UBIQUITIN LIGASE3" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 67/162 (41%), Positives = 104/162 (64%)

Query:   129 APGS-ITVAFFGKEDVD-------CTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDL 180
             APG+ I + FF  +D+          L+ + E ++ P +++ +  + ++  Q      + 
Sbjct:   214 APGTGIDLGFFSLDDLSKPSPEEVYPLVISAETVISPSSVSEEPLVHKQITQAVLEKTND 273

Query:   181 SMFDEIALTKQILWVNRVRYELQEIYGI------GSTVAGDETDSGKECVICLSEPRDTT 234
               F ++ + KQILW+   RYELQE+YGI      G+  +G E   GKECVICL+EP+DT 
Sbjct:   274 GSF-KVKVMKQILWIEGERYELQELYGIDNSITQGTAASGLEDTGGKECVICLTEPKDTA 332

Query:   235 VLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNA 276
             V+PCRH+C+CS+CA+ L+FQTN+CPICRQP+  L++IKV ++
Sbjct:   333 VMPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVKIKVESS 374

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

UNIPROTKB|K7EIM7 MGRN1 "E3 ubiquitin-protein ligase MGRN1" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
 Identities = 47/90 (52%), Positives = 62/90 (68%)

Query:   190 KQILWVNRVRYELQEIYGIGS-----TVAGDE--TDSGKECVICLSEPRDTTVLPCRHMC 242
             KQI  V+RV Y LQEIYGI +     T   D+  +D+  ECV+CLS+ RDT +LPCRH+C
Sbjct:   205 KQI--VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLC 262

Query:   243 MCSECAKVLQFQTNRCPICRQPVERLLEIK 272
             +C+ CA  L++Q N CPICR P   LL+I+
Sbjct:   263 LCTSCADTLRYQANNCPICRLPFRALLQIR 292

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C804 MGRN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 239 (89.2 bits), Expect = 5.4e-28, Sum P(2) = 5.4e-28
 Identities = 47/90 (52%), Positives = 62/90 (68%)

Query:   190 KQILWVNRVRYELQEIYGIGS-----TVAGDE--TDSGKECVICLSEPRDTTVLPCRHMC 242
             KQI  V+RV Y LQEIYGI +     T   D+  +D+  ECV+CLS+ RDT +LPCRH+C
Sbjct:   241 KQI--VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLC 298

Query:   243 MCSECAKVLQFQTNRCPICRQPVERLLEIK 272
             +C+ CA  L++Q N CPICR P   LL+I+
Sbjct:   299 LCNSCADTLRYQANNCPICRLPFRALLQIR 328

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0043951 "negative regulation of cAMP-mediated signaling" evidence=IEA

GO:0045744 "negative regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

FB|FBgn0030514 CG9941 [Drosophila melanogaster (taxid:7227)]

 Score = 241 (89.9 bits), Expect = 3.2e-27, Sum P(3) = 3.2e-27
 Identities = 46/89 (51%), Positives = 60/89 (67%)

Query:   190 KQILWVNRVRYELQEIYGIGSTVAG----DET--DSGKECVICLSEPRDTTVLPCRHMCM 243
             KQ ++V+ + Y LQEIYGI +        DE   D G ECVIC+SE RDT +LPCRH+C+
Sbjct:   280 KQKIFVDGLCYLLQEIYGIENKAVNKTSLDEEIDDHGSECVICMSETRDTLILPCRHLCL 339

Query:   244 CSECAKVLQFQTNRCPICRQPVERLLEIK 272
             C+ CA  L++Q N CPICR P   LL+I+
Sbjct:   340 CNSCADSLRYQANNCPICRAPFRALLQIR 368

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1311862 Mgrn1 "mahogunin ring finger 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 239 (89.2 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
 Identities = 47/90 (52%), Positives = 62/90 (68%)

Query:   190 KQILWVNRVRYELQEIYGIGS-----TVAGDE--TDSGKECVICLSEPRDTTVLPCRHMC 242
             KQI  V+RV Y LQEIYGI +     T   D+  +D+  ECV+CLS+ RDT +LPCRH+C
Sbjct:   241 KQI--VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSSECVVCLSDLRDTLILPCRHLC 298

Query:   243 MCSECAKVLQFQTNRCPICRQPVERLLEIK 272
             +C+ CA  L++Q N CPICR P   LL+I+
Sbjct:   299 LCTSCADTLRYQANNCPICRLPFRALLQIR 328

GO:0000209 "protein polyubiquitination" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005769 "early endosome" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006513 "protein monoubiquitination" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA;ISO

GO:0043951 "negative regulation of cAMP-mediated signaling" evidence=ISO;ISS

GO:0045744 "negative regulation of G-protein coupled receptor protein signaling pathway" evidence=ISO;ISS

UNIPROTKB|Q5XIQ4 Mgrn1 "E3 ubiquitin-protein ligase MGRN1" [Rattus norvegicus (taxid:10116)]

 Score = 239 (89.2 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
 Identities = 47/90 (52%), Positives = 62/90 (68%)

Query:   190 KQILWVNRVRYELQEIYGIGS-----TVAGDE--TDSGKECVICLSEPRDTTVLPCRHMC 242
             KQI  V+RV Y LQEIYGI +     T   D+  +D+  ECV+CLS+ RDT +LPCRH+C
Sbjct:   241 KQI--VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSSECVVCLSDLRDTLILPCRHLC 298

Query:   243 MCSECAKVLQFQTNRCPICRQPVERLLEIK 272
             +C+ CA  L++Q N CPICR P   LL+I+
Sbjct:   299 LCTSCADTLRYQANNCPICRLPFRALLQIR 328

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LFH6	LUL2_ARATH	6, ., 3, ., 2, ., -	0.5205	0.7956	0.7424	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024522001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (349 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	2e-17
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-09
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-08
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-08
smart00184	40	smart00184, RING, Ring finger	4e-05
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	3e-04
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.001
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	0.003
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	0.004
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.004

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 74.0 bits (182), Expect = 2e-17
 Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267
               CVICL  PR+   LPC H+C+C ECAK L+    +CPICRQP+E 
Sbjct: 1   EDDLCVICLERPRNVVFLPCGHLCLCEECAKRLR-SKKKCPICRQPIES 48

Length = 49

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 222 ECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQ 263
           EC ICL   RD  VL PC H+  C EC      + ++CPICR 
Sbjct: 4   ECPICLDLLRDPVVLTPCGHVF-CRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 222 ECVICLSEPRDTTVL-PCRHMCMCSECA-KVLQFQTNRCPICRQPV 265
           EC ICL E R+  VL PC H+  C  C  K L+   N CP+CR P+
Sbjct: 1   ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 222 ECVICLSE---PRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQP 264
           EC ICL E     +  VLPC H     EC       +N CP+CR P
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGH-VFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 39.8 bits (93), Expect = 4e-05
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 223 CVICLSE-PRDTTVLPCRHMCMCSECA-KVLQFQTNRCPIC 261
           C ICL E  +D  +LPC H   C  C  K L+   N CPIC
Sbjct: 1   CPICLEEYLKDPVILPCGHT-FCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 210 STVAGDETDSGKECVICLS---EPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 265
           S     E D G EC IC+S   +     VLPC H        K L   +N+CP+CR  +
Sbjct: 313 SIERAVEADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 10/45 (22%)

Query: 49 LYPGYYPPPVPVHGAYGYHHMPSGHYPAHPPPPPPPPQYMEHQKA 93
          L PG  PPP P          P G  P   PPPPPPP     +++
Sbjct: 4  LPPGNPPPPPP----------PPGFEPPSQPPPPPPPGVNVKKRS 38

Length = 2365

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 223 CVICLSEPRD-TTVLPCRHMCMCSEC-AKVLQFQTNRCPIC 261
           C ICL EP+D  T+LPC H+  CS+C    L+     CP+C
Sbjct: 1   CPICLEEPKDPVTILPCGHL-FCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 9/53 (16%)

Query: 220 GKECVICLSEPRDTT-------VLP-CRHMCMCSECAKVLQFQTNRCPICRQP 264
            KEC IC+ +  D         +L  C H+  C EC  + + + N CP+CR P
Sbjct: 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTP 225

Length = 238

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 15  PPPTPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGYYP--PPVPVHGAYGYHHMPSG 72
           PP + P     + S    A++TP        + P  PG  P  P  P          P  
Sbjct: 190 PPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPIPPVI 249

Query: 73  HYPAHPPPPPPPPQY-MEHQKAVT 95
            Y A PP PPP P   ++H +AVT
Sbjct: 250 QYVAPPPVPPPQPIIPIQHIRAVT 273

Length = 582

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	99.71
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	99.43
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.42
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.0
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	98.94
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.92
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.92
PHA02929	238	N1R/p28-like protein; Provisional	98.91
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.89
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.81
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	98.71
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.63
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.62
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.58
PHA02926	242	zinc finger-like protein; Provisional	98.57
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.5
PF14634	44	zf-RING_5: zinc-RING finger domain	98.5
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	98.49
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.48
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.44
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.42
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.42
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.42
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.39
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.34
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.3
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	98.29
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.22
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.15
COG5236	493	Uncharacterized conserved protein, contains RING Z	98.14
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.06
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.92
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.91
PF02762	86	Cbl_N3: CBL proto-oncogene N-terminus, SH2-like do	97.89
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.87
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.85
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.81
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.8
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.74
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.72
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.7
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.63
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.49
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.43
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	97.34
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	97.31
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.31
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.08
COG5152	259	Uncharacterized conserved protein, contains RING a	97.06
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.87
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.78
KOG0825	1134	consensus PHD Zn-finger protein [General function	96.53
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.2
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.13
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	96.09
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.89
KOG4445	368	consensus Uncharacterized conserved protein, conta	95.85
COG5219	1525	Uncharacterized conserved protein, contains RING Z	95.7
PF04641	260	Rtf2: Rtf2 RING-finger	95.68
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	95.66
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	95.43
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	95.38
KOG4367	699	consensus Predicted Zn-finger protein [Function un	95.31
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	94.97
KOG2660	331	consensus Locus-specific chromosome binding protei	94.87
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	94.81
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	94.6
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	94.48
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.41
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.29
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.14
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	94.09
KOG4739	233	consensus Uncharacterized protein involved in syna	94.02
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	94.01
KOG1001	674	consensus Helicase-like transcription factor HLTF/	93.9
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	93.41
COG5175	480	MOT2 Transcriptional repressor [Transcription]	92.85
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	92.85
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	92.72
KOG3002	299	consensus Zn finger protein [General function pred	92.6
KOG2113	394	consensus Predicted RNA binding protein, contains	92.53
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	92.28
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	92.19
PHA02862	156	5L protein; Provisional	91.91
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	91.44
PHA03096	284	p28-like protein; Provisional	91.4
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	89.99
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	89.49
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	88.98
COG5222	427	Uncharacterized conserved protein, contains RING Z	88.92
KOG1941	518	consensus Acetylcholine receptor-associated protei	88.84
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	88.81
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	88.65
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	88.05
KOG3842	429	consensus Adaptor protein Pellino [Signal transduc	87.14
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	86.89
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	85.92
KOG2113	394	consensus Predicted RNA binding protein, contains	85.18
KOG3799	169	consensus Rab3 effector RIM1 and related proteins,	84.94
KOG3053	293	consensus Uncharacterized conserved protein [Funct	83.61
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	83.12
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	81.93
PF04710	416	Pellino: Pellino; InterPro: IPR006800 Pellino is i	80.39
KOG0825	1134	consensus PHD Zn-finger protein [General function	80.07

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.4e-52  Score=379.63  Aligned_cols=275  Identities=48%  Similarity=0.793  Sum_probs=213.5

Q ss_pred             CCCCCCCC----CCCCCCCCCCCC-CCCCCCCcccc-ccCCCCCCCCCCCCCCCCCCC-CCCCCCCCC--CCCCC---CC
Q 023674            1 MGNSGSHR----RHHSNIPPPTPP-PTTRQTQSQYV-FAAATPYPSQYPNQYYPLYPG-YYPPPVPVH--GAYGY---HH   68 (279)
Q Consensus         1 ~~~~~s~~----~~~~~~~ppppp-p~p~~~~~~~~-~~~~~p~p~p~p~~~~~~~~~-~~ppppp~p--~p~~~---~~   68 (279)
                      |||+.|.+    +|+..++.+|+. ..++++++.++ |..+.||+++.+. .+-.+.+ +.++.-..|  .||+.   +|
T Consensus         1 MG~v~s~~~~~~~~~~~~~~~p~~~~~~p~~~n~~~~F~~~~p~~~~~~~-~~l~~~~~~~~~~~~rp~~~Py~~~~~~h   79 (349)
T KOG4265|consen    1 MGNVLSRGFNGVSRLLSHANVPPAYYTPPPSGNYFGHFGMGGPYDNPNPE-EYLFYLNNLLPFLGSRPVLFPYYFTPLSH   79 (349)
T ss_pred             CceeeecccccccccccccCCCcccccCCCCCCeeeeEeccCCCCCCChh-hhcccccccccccccccccCCCCCCCccc
Confidence            99999972    333333322111 11223356666 7777788888776 2223333 222111111  11221   11


Q ss_pred             CCCCCCCC-CC-----C--CCCCCCCccccccccccccceeecCCceeEEeCCCCCCeeEEEEEecCCCCccEEEEEeee
Q 023674           69 MPSGHYPA-HP-----P--PPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGK  140 (279)
Q Consensus        69 ~~p~~~~~-~~-----~--~~~~~~~~~~~q~t~~irn~VNi~K~Slrl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a~  140 (279)
                      .+..+.-- +.     .  ...++-+++ ||+++|||||||++|++++++.|..+++.|+|+|+|||+..|.|+|+||||
T Consensus        80 ~~~~~~~~l~~~r~~s~~~~~~~~~~~~-~~~av~i~~d~~l~k~~~~l~~d~~~P~~~~~sf~fda~~~g~itV~~fak  158 (349)
T KOG4265|consen   80 APIRPLIDLVNYRKPSLLLVCAPPDQYL-HQKAVTIRNDVNLDKETLRLDPDPLTPGLLLLSFTFDALAQGAITVLFFAK  158 (349)
T ss_pred             ccccchhhcccccccccceEecCCCccc-cccceeccchhhcccceEEeccCCCCcceeEEEEEeccccCccEEEEEecc
Confidence            11111110 00     0  123455688 999999999999999999999998899999999999999999999999999


Q ss_pred             ecCcceeeeccccccCCceeeeccccCceecCCCCCCCCCChhhhHh---------------------------------
Q 023674          141 EDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIA---------------------------------  187 (279)
Q Consensus       141 E~~~~~l~~~~~~~~~~~~~~~~~gl~Q~F~~~sg~~id~~~~~~~e---------------------------------  187 (279)
                      |+..++++......+.++|++|.+|++|.|.+++ ++||++.|++++                                 
T Consensus       159 E~~~c~~~~~~~~~~~~~t~~f~~gl~Q~F~q~s-~~~D~~~~~~~~L~~~~~~~vyplsi~~~~~~~~~~~~~~~~~~~  237 (349)
T KOG4265|consen  159 EEVLCGLVLLVPDELPSITVHFEKGLGQLFLQPS-TGIDFSVMSIDDLSLSLDRRVYPLSISAEVQPSDVVESMGVFHVI  237 (349)
T ss_pred             ccccccccccccccCCCeeEEcccchhhhhcCCc-cccchhhcchhhhcccccCCeeeEEEEEEEeccccccccceeeEE
Confidence            9999999998888899999999999999999999 899999988776                                 


Q ss_pred             ----------------hhhhheeeccchhhhhhhhcCCCCCCCCCC----CCCccccccccCCCccEEecCCCcccCHHH
Q 023674          188 ----------------LTKQILWVNRVRYELQEIYGIGSTVAGDET----DSGKECVICLSEPRDTTVLPCRHMCMCSEC  247 (279)
Q Consensus       188 ----------------~lkq~i~~~~~~y~l~e~~~~~~s~~~~~~----~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C  247 (279)
                                      ++||++|+++..|+++|+||++++..++.+    +++++|||||++.+|+++|||||+|+|.+|
T Consensus       238 tq~v~~~~~~G~~~~~~~kQ~~~v~g~~y~LqEiyGien~~v~~~~~~~~~~gkeCVIClse~rdt~vLPCRHLCLCs~C  317 (349)
T KOG4265|consen  238 TQAVYEKDEKGSIKIKVLKQILWVDGTRYLLQEIYGIENSTVEGTDADESESGKECVICLSESRDTVVLPCRHLCLCSGC  317 (349)
T ss_pred             EeeeeccCcCCceeeeeeeeEEEEeCceeeeehhhccccCCCCCCccccccCCCeeEEEecCCcceEEecchhhehhHhH
Confidence                            789999999999999999999976655433    678999999999999999999999999999


Q ss_pred             HHHHHhcCCCCccccccccceEEEecCCCCC
Q 023674          248 AKVLQFQTNRCPICRQPVERLLEIKVNNAAD  278 (279)
Q Consensus       248 ~~~l~~~~~~CPiCR~~i~~~~~i~~~~~~~  278 (279)
                      ++.|+.+.++|||||+.|..+++|++++++.
T Consensus       318 a~~Lr~q~n~CPICRqpi~~ll~i~~~~~~~  348 (349)
T KOG4265|consen  318 AKSLRYQTNNCPICRQPIEELLEIYVNKEDR  348 (349)
T ss_pred             HHHHHHhhcCCCccccchHhhheeccccccC
Confidence            9999999999999999999999999998764

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=99.71  E-value=3.4e-18  Score=158.90  Aligned_cols=151  Identities=19%  Similarity=0.448  Sum_probs=122.9

Q ss_pred             eEEeCCCCCCeeEEEEEecCCCCccEEEEEeeeecCcceeeeccccccCCceeeeccccCceecCCCCCCCCCChhhhHh
Q 023674          108 RVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIA  187 (279)
Q Consensus       108 rl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a~E~~~~~l~~~~~~~~~~~~~~~~~gl~Q~F~~~sg~~id~~~~~~~e  187 (279)
                      ||.+...++|.|.  |.++|++.|+|+|.|++.++...++++.++.++|..--.+..|.   |.++.|...|.++-+..+
T Consensus       271 RLqk~~~KpGSYI--FRlSCTRlGQWAIGYVt~dG~IlQTIP~NKpL~QaL~eG~keGF---YlyPdGr~~npdLt~l~~  345 (563)
T KOG1785|consen  271 RLQKYIKKPGSYI--FRLSCTRLGQWAIGYVTADGNILQTIPQNKPLFQALLEGHKEGF---YLYPDGRDQNPDLTGLCQ  345 (563)
T ss_pred             HHHHHhcCCCceE--EeeccCcccceeEEEEcCCCceeeccCCCcHHHHHHHhccccce---EECCCCccCCCChhhccC
Confidence            4555557899999  99999999999999999999999999999998887333333343   678888876666555544


Q ss_pred             h-hhhheeeccchhhhhhhhcCCCCCCCCCCCCCccccccccCCCccEEecCCCcccCHHHHHHHHhc--CCCCcccccc
Q 023674          188 L-TKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ--TNRCPICRQP  264 (279)
Q Consensus       188 ~-lkq~i~~~~~~y~l~e~~~~~~s~~~~~~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~--~~~CPiCR~~  264 (279)
                      . -.+.|.+....|+|.-.+|          ....+|.||-++.+|+.+.||||+ +|..|+..|+..  +..||+||..
T Consensus       346 ~~p~d~i~VtqEQyeLYceMg----------sTFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcE  414 (563)
T KOG1785|consen  346 PPPQDRIKVTQEQYELYCEMG----------STFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCE  414 (563)
T ss_pred             CCcccceeeeHHHHHHHHHcc----------chHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeE
Confidence            3 3677888888898887765          456799999999999999999999 999999999843  5789999999


Q ss_pred             ccceEEEecC
Q 023674          265 VERLLEIKVN  274 (279)
Q Consensus       265 i~~~~~i~~~  274 (279)
                      |.+.-.|.++
T Consensus       415 IKGte~viid  424 (563)
T KOG1785|consen  415 IKGTEPVIID  424 (563)
T ss_pred             eccccceeee
Confidence            9987777654

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=8.5e-15  Score=100.13  Aligned_cols=53  Identities=38%  Similarity=0.956  Sum_probs=47.5

Q ss_pred             CccccccccCCCccEEecCCCcccCHHHHHHHHh-cCCCCccccccccceEEEe
Q 023674          220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVERLLEIK  272 (279)
Q Consensus       220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~~i~~~~~i~  272 (279)
                      +.||.||++.+.|.++.-|||||+|.+|..+++. .+..||+||++|..+++.+
T Consensus         7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY   60 (62)
T KOG4172|consen    7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY   60 (62)
T ss_pred             ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence            4799999999999999999999999999998665 5788999999999887654

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.42  E-value=9.7e-14  Score=95.04  Aligned_cols=49  Identities=51%  Similarity=1.267  Sum_probs=43.9

Q ss_pred             CccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674          220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL  268 (279)
Q Consensus       220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~  268 (279)
                      +.+|.||+++.++++++||||++||..|+.+|+....+||+||+.|+++
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV   50 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence            4689999999999999999999999999999998889999999998763

...

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=2.4e-10  Score=103.34  Aligned_cols=53  Identities=25%  Similarity=0.725  Sum_probs=47.5

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI  271 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i  271 (279)
                      +....|++|+++..+...+||||+ ||+.|+..|......||+||..+.-..-|
T Consensus       237 ~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi  289 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVI  289 (293)
T ss_pred             CCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCccee
Confidence            566899999999999999999999 99999999999999999999988754433

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.3e-10  Score=104.89  Aligned_cols=50  Identities=44%  Similarity=1.032  Sum_probs=46.3

Q ss_pred             CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEe
Q 023674          219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK  272 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~  272 (279)
                      ...+|.|||+.++|.+||+|||+..|.+|-+.|    +.|||||+.|..+.+|+
T Consensus       299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~rvvrif  348 (350)
T KOG4275|consen  299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIVRVVRIF  348 (350)
T ss_pred             HHHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHHHHHhhh
Confidence            378999999999999999999999999999987    49999999999988876

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.92  E-value=3.8e-10  Score=75.02  Aligned_cols=40  Identities=43%  Similarity=0.936  Sum_probs=35.4

Q ss_pred             cccccccCC---CccEEecCCCcccCHHHHHHHHhcCCCCcccc
Q 023674          222 ECVICLSEP---RDTTVLPCRHMCMCSECAKVLQFQTNRCPICR  262 (279)
Q Consensus       222 ~C~IC~~~~---~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR  262 (279)
                      +|.||++..   ..++.++|||. ||.+|+..|..++.+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence            799999876   35788899999 99999999999999999998

...

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.92  E-value=1e-09  Score=94.74  Aligned_cols=54  Identities=31%  Similarity=0.802  Sum_probs=44.9

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc----------------CCCCccccccccc--eEEEe
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ----------------TNRCPICRQPVER--LLEIK  272 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~----------------~~~CPiCR~~i~~--~~~i~  272 (279)
                      .+..+|.||++..++.++++|||. ||..|+..|...                ..+||+||..|..  ++.|+
T Consensus        16 ~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             CCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            456899999999999999999999 999999998642                2479999999975  44443

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.91  E-value=1.1e-09  Score=97.98  Aligned_cols=55  Identities=31%  Similarity=0.839  Sum_probs=46.0

Q ss_pred             CCCccccccccCCCc--------cEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674          218 DSGKECVICLSEPRD--------TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV  273 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~--------~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~  273 (279)
                      ..+.+|.||++...+        .++.+|+|. ||.+|+..|..+..+||+||..+..+++.+.
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~  234 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKSRF  234 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeeeee
Confidence            346799999997554        356689999 9999999999988999999999988776543

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2e-09  Score=94.70  Aligned_cols=57  Identities=25%  Similarity=0.583  Sum_probs=47.7

Q ss_pred             CCCCccccccccCCCccEEecCCCcccCHHHHHHHHhc---CCCCccccccccc--eEEEecC
Q 023674          217 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ---TNRCPICRQPVER--LLEIKVN  274 (279)
Q Consensus       217 ~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~---~~~CPiCR~~i~~--~~~i~~~  274 (279)
                      +....+|.||++..+|.++..|||+ ||+.|+.+|...   +..||+|+..|..  ++-|+..
T Consensus        44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr  105 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR  105 (230)
T ss_pred             CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence            3567899999999999999999999 999999999864   3569999998875  4555543

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.81  E-value=2.3e-09  Score=69.53  Aligned_cols=38  Identities=45%  Similarity=1.089  Sum_probs=33.5

Q ss_pred             ccccccCCCcc-EEecCCCcccCHHHHHHHHhcCCCCccc
Q 023674          223 CVICLSEPRDT-TVLPCRHMCMCSECAKVLQFQTNRCPIC  261 (279)
Q Consensus       223 C~IC~~~~~~~-~~lPCgH~~~C~~C~~~l~~~~~~CPiC  261 (279)
                      |.||++..++. ++++|||. ||.+|+.+|.....+||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence            88999999998 68999999 9999999998888889998

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=3.4e-09  Score=98.56  Aligned_cols=52  Identities=37%  Similarity=0.947  Sum_probs=46.2

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV  273 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~  273 (279)
                      .....|+||++++.+++++||||+|.|..|.+.+.    +||+||+.|...++++.
T Consensus       303 ~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~----~CPvCR~rI~~~~k~y~  354 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLP----QCPVCRQRIRLVRKRYR  354 (355)
T ss_pred             CCCCceEEecCCccceeeecCCcEEEchHHHhhCC----CCchhHHHHHHHHHHhc
Confidence            55678999999999999999999999999999874    69999999988877653

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=2.4e-08  Score=84.67  Aligned_cols=54  Identities=31%  Similarity=0.742  Sum_probs=44.0

Q ss_pred             CCCccccccccCCCccE--EecCCCcccCHHHHHHHHhcCCCCccccccccc--eEEEe
Q 023674          218 DSGKECVICLSEPRDTT--VLPCRHMCMCSECAKVLQFQTNRCPICRQPVER--LLEIK  272 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~--~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~--~~~i~  272 (279)
                      +.-..|.|||+.....+  -.-|||+ ||..|++..+....+||+||..|..  +.+|+
T Consensus       129 ~~~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~  186 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIY  186 (187)
T ss_pred             ccccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence            34468999999877654  3689999 9999999999999999999987765  45554

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.62  E-value=3.5e-08  Score=64.23  Aligned_cols=43  Identities=47%  Similarity=1.108  Sum_probs=35.7

Q ss_pred             cccccccCCCccEE-ecCCCcccCHHHHHHHHhc-CCCCccccccc
Q 023674          222 ECVICLSEPRDTTV-LPCRHMCMCSECAKVLQFQ-TNRCPICRQPV  265 (279)
Q Consensus       222 ~C~IC~~~~~~~~~-lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i  265 (279)
                      +|.||++...+.+. .+|||. ||..|+..|..+ ...||+||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence            59999999855544 459999 999999999877 67899999754

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.58  E-value=3.9e-08  Score=64.90  Aligned_cols=38  Identities=39%  Similarity=0.906  Sum_probs=30.2

Q ss_pred             ccccccCCCccEEecCCCcccCHHHHHHHHhcC----CCCccc
Q 023674          223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT----NRCPIC  261 (279)
Q Consensus       223 C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~----~~CPiC  261 (279)
                      |.||++-+++.+.++|||. ||..|+.+|+...    ..||+|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence            8899999999999999999 9999999987653    359987

>PHA02926 zinc finger-like protein; Provisional

Probab=98.57  E-value=3.2e-08  Score=86.79  Aligned_cols=51  Identities=27%  Similarity=0.671  Sum_probs=40.4

Q ss_pred             CCCccccccccCCC---------ccEEecCCCcccCHHHHHHHHhcC------CCCccccccccceE
Q 023674          218 DSGKECVICLSEPR---------DTTVLPCRHMCMCSECAKVLQFQT------NRCPICRQPVERLL  269 (279)
Q Consensus       218 ~~~~~C~IC~~~~~---------~~~~lPCgH~~~C~~C~~~l~~~~------~~CPiCR~~i~~~~  269 (279)
                      ..+.+|.|||+...         -.++.+|+|. ||..|+..|+...      ..||+||..+..+.
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~  233 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNIT  233 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence            45689999998631         2467799999 9999999999742      45999999877544

>smart00184 RING Ring finger

Probab=98.50  E-value=1.1e-07  Score=59.62  Aligned_cols=38  Identities=47%  Similarity=1.104  Sum_probs=34.3

Q ss_pred             ccccccCCCccEEecCCCcccCHHHHHHHHh-cCCCCccc
Q 023674          223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPIC  261 (279)
Q Consensus       223 C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~-~~~~CPiC  261 (279)
                      |.||++..++.++++|||. ||..|++.|.. ...+||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence            7899999999999999999 99999999887 45679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.50  E-value=8.1e-08  Score=63.90  Aligned_cols=41  Identities=37%  Similarity=0.980  Sum_probs=34.9

Q ss_pred             cccccccCC---CccEEecCCCcccCHHHHHHHHhcCCCCccccc
Q 023674          222 ECVICLSEP---RDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQ  263 (279)
Q Consensus       222 ~C~IC~~~~---~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~  263 (279)
                      +|.||++..   +...++.|||. ||..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence            488999887   34788999999 999999998755678999985

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=6.7e-08  Score=90.52  Aligned_cols=49  Identities=29%  Similarity=0.716  Sum_probs=41.8

Q ss_pred             ccccccccCCCc---cEEecCCCcccCHHHHHHHHhcCCC-CccccccccceEE
Q 023674          221 KECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNR-CPICRQPVERLLE  270 (279)
Q Consensus       221 ~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~~~~~-CPiCR~~i~~~~~  270 (279)
                      ..|+||+|.++.   ..+|||.|. |+..|++.|..+..+ ||+|++.+..-..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~~~  282 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTDSG  282 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence            599999998875   678999999 999999999988755 9999997765443

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.48  E-value=8.3e-08  Score=62.51  Aligned_cols=38  Identities=37%  Similarity=0.998  Sum_probs=34.1

Q ss_pred             ccccccCCCccE-EecCCCcccCHHHHHHHHh--cCCCCccc
Q 023674          223 CVICLSEPRDTT-VLPCRHMCMCSECAKVLQF--QTNRCPIC  261 (279)
Q Consensus       223 C~IC~~~~~~~~-~lPCgH~~~C~~C~~~l~~--~~~~CPiC  261 (279)
                      |.||++...+.+ +++|||. ||..|+.+|+.  ....||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence            889999999988 9999999 99999999887  45679988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=8.5e-08  Score=89.47  Aligned_cols=49  Identities=39%  Similarity=0.837  Sum_probs=41.5

Q ss_pred             CCCCccccccccCCCc-------------cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674          217 TDSGKECVICLSEPRD-------------TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE  266 (279)
Q Consensus       217 ~~~~~~C~IC~~~~~~-------------~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~  266 (279)
                      ..++..|.|||++...             ..-|||||. ++..|++.|..+..+|||||.++.
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCccc
Confidence            4677899999998322             256899999 999999999999999999999853

>smart00504 Ubox Modified RING finger domain

Probab=98.42  E-value=2.6e-07  Score=65.46  Aligned_cols=46  Identities=20%  Similarity=0.321  Sum_probs=42.1

Q ss_pred             ccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       221 ~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      ..|.||++...+.++++|||. ||..|+..|.....+||+|+..+..
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            579999999999999999999 9999999998878899999998843

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.42  E-value=2e-07  Score=68.82  Aligned_cols=40  Identities=33%  Similarity=0.737  Sum_probs=33.4

Q ss_pred             cccccccCCC-------------ccEEecCCCcccCHHHHHHHHhcCCCCcccc
Q 023674          222 ECVICLSEPR-------------DTTVLPCRHMCMCSECAKVLQFQTNRCPICR  262 (279)
Q Consensus       222 ~C~IC~~~~~-------------~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR  262 (279)
                      .|.||++...             .+++..|||. |+..|+..|....++||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence            4999998772             2456689999 99999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.42  E-value=5.3e-07  Score=90.79  Aligned_cols=16  Identities=6%  Similarity=0.183  Sum_probs=9.7

Q ss_pred             ccccccccceeecCCc
Q 023674           91 QKAVTIRNDVNVKKET  106 (279)
Q Consensus        91 q~t~~irn~VNi~K~S  106 (279)
                      ...+..+-.|-+||--
T Consensus       615 kpKK~~k~e~~Mrr~n  630 (1102)
T KOG1924|consen  615 KPKKVYKPEVPMRRFN  630 (1102)
T ss_pred             CccccCCCCCccccCC
Confidence            3345666677777643

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.39  E-value=1.8e-07  Score=89.58  Aligned_cols=49  Identities=27%  Similarity=0.628  Sum_probs=44.2

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      +....|.||++...+.++++|||. ||..|+..|......||+||..+..
T Consensus        24 e~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        24 DTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             ccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence            456799999999999999999999 9999999988777789999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=3e-07  Score=83.90  Aligned_cols=48  Identities=38%  Similarity=0.873  Sum_probs=41.0

Q ss_pred             CCCccccccccCCCc---cEEecCCCcccCHHHHHHHHh-cCCCCcccccccc
Q 023674          218 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~~i~  266 (279)
                      +.+-+|+|||+++..   .+++||.|. |+..|+..|.. -+++||+||.+|-
T Consensus       321 ~~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence            456899999987643   688999999 99999999987 4689999999863

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=3.2e-07  Score=82.27  Aligned_cols=48  Identities=31%  Similarity=0.804  Sum_probs=42.2

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHH-HHhcCC-CCcccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKV-LQFQTN-RCPICRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~-l~~~~~-~CPiCR~~i~  266 (279)
                      ..+.+|.||++...+...++|||+ ||..|+.. |..+.. .||+||+.+.
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence            457889999999999999999999 99999998 877654 4999999764

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.9e-07  Score=82.20  Aligned_cols=47  Identities=38%  Similarity=0.995  Sum_probs=42.1

Q ss_pred             cccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEe
Q 023674          222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK  272 (279)
Q Consensus       222 ~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~  272 (279)
                      .|.+|.++...++++||+|+|+|..|...+    ..||+|+..+.+.+.++
T Consensus       160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~----~~CPiC~~~~~s~~~v~  206 (207)
T KOG1100|consen  160 SCRKCGEREATVLLLPCRHLCLCGICDESL----RICPICRSPKTSSVEVN  206 (207)
T ss_pred             cceecCcCCceEEeecccceEecccccccC----ccCCCCcChhhceeecc
Confidence            399999999999999999999999998864    47999999998887764

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=7.4e-07  Score=86.41  Aligned_cols=55  Identities=29%  Similarity=0.695  Sum_probs=46.3

Q ss_pred             CccccccccCCCccEEecCCCcccCHHHHHHHHhcC-----CCCccccccccc--eEEEecCC
Q 023674          220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-----NRCPICRQPVER--LLEIKVNN  275 (279)
Q Consensus       220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~-----~~CPiCR~~i~~--~~~i~~~~  275 (279)
                      +..|.||++...-++.+-|||. ||..|+...+...     ..||+||..|..  +.-|.+.+
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~  247 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIED  247 (513)
T ss_pred             CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeecc
Confidence            6789999999999999999999 9999999855432     579999999987  77766644

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.15  E-value=1.2e-06  Score=58.17  Aligned_cols=31  Identities=35%  Similarity=0.879  Sum_probs=20.8

Q ss_pred             ccccccCCCc----cEEecCCCcccCHHHHHHHHhcC
Q 023674          223 CVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQT  255 (279)
Q Consensus       223 C~IC~~~~~~----~~~lPCgH~~~C~~C~~~l~~~~  255 (279)
                      |.||++ +.+    .++|+|||. ||.+|++.|...+
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcC
Confidence            889999 766    788999999 9999999988753

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.14  E-value=4e-06  Score=77.85  Aligned_cols=63  Identities=27%  Similarity=0.659  Sum_probs=51.0

Q ss_pred             CCCCCCCCCCCCCccccccccCCCccEEecCCCcccCHHHHHHHHh--cCCCCccccccccceEEE
Q 023674          208 IGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF--QTNRCPICRQPVERLLEI  271 (279)
Q Consensus       208 ~~~s~~~~~~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~--~~~~CPiCR~~i~~~~~i  271 (279)
                      +..++.++.|++...|+||-....-..++||+|. +|..|+.+++.  ....|++||..-+.++-.
T Consensus        49 lttsSaddtDEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT  113 (493)
T COG5236          49 LTTSSADDTDEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVVFT  113 (493)
T ss_pred             cccccccccccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEEEe
Confidence            3344455556777899999999999999999999 99999998753  467899999988777654

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.5e-06  Score=86.93  Aligned_cols=48  Identities=31%  Similarity=0.708  Sum_probs=43.2

Q ss_pred             CCCccccccccCCCc-----cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674          218 DSGKECVICLSEPRD-----TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~-----~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~  266 (279)
                      ..+..|.||++....     ...++|+|. ||..|++.|..+.++||+||..+.
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhhh
Confidence            456799999999888     799999999 999999999999999999999443

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=3.6e-06  Score=75.09  Aligned_cols=45  Identities=33%  Similarity=0.762  Sum_probs=39.9

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQ  263 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~  263 (279)
                      ++...|.||++.+++.++++|+|. ||..|+..++.....||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence            467899999999999999999999 999999997764468999994

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.91  E-value=3.1e-06  Score=78.41  Aligned_cols=49  Identities=29%  Similarity=0.623  Sum_probs=44.4

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      ++-..|-||.+-++..++.||+|. ||.-|++........||.|+..+..
T Consensus        21 D~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence            445789999999999999999999 9999999988888899999988765

>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface

Probab=97.89  E-value=2.8e-06  Score=62.58  Aligned_cols=69  Identities=14%  Similarity=0.358  Sum_probs=48.8

Q ss_pred             eEEeCCCCCCeeEEEEEecCCCCccEEEEEeeeecCcceeeeccccccCCceeeeccccCceecCCCCCCCCCC
Q 023674          108 RVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLS  181 (279)
Q Consensus       108 rl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a~E~~~~~l~~~~~~~~~~~~~~~~~gl~Q~F~~~sg~~id~~  181 (279)
                      ||+...+.+|.|.  |+++|++.|+|+|.|++.++...++++.++++++...-.+.+|.   |..+.|.+.+.+
T Consensus        17 ~L~~~~~kpGsYi--FRlSCTrLGQWAIGyV~~dg~I~QTIPqnk~L~qaLidG~reG~---ylyP~G~~~npd   85 (86)
T PF02762_consen   17 RLQHYRDKPGSYI--FRLSCTRLGQWAIGYVTQDGKILQTIPQNKSLYQALIDGSREGF---YLYPDGKDDNPD   85 (86)
T ss_dssp             HHGGGTTSTTEEE--EEEESSSTTSEEEEEEETTSEEEEE--SSS-HHHHHHHHHHTTS---S-EETT-SS---
T ss_pred             HHHHHhCCcccEE--EeeccccccceeEEEEcCCCcEEEecCCCchHHHHHHhccccce---EECCCCCCCCCC
Confidence            4555667899999  99999999999999999999999999999998887433333444   677777765543

The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.87  E-value=1e-05  Score=59.62  Aligned_cols=48  Identities=25%  Similarity=0.277  Sum_probs=39.2

Q ss_pred             CCccccccccCCCccEEecCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674          219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER  267 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~  267 (279)
                      +...|.||.+-.+|.++++|||. |++.|+..|..+ ...||+||+.+..
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            35789999999999999999999 999999999988 7889999998875

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.85  E-value=5.3e-06  Score=75.43  Aligned_cols=49  Identities=29%  Similarity=0.512  Sum_probs=43.7

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      +....|.||-+..+..++.+|||. ||.-|++........||+||.....
T Consensus        23 Ds~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          23 DSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             hhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence            455789999999999999999999 9999999988777899999987654

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=4.6e-06  Score=84.36  Aligned_cols=54  Identities=22%  Similarity=0.668  Sum_probs=45.1

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHH-HHhcCCCCccccccccc--eEEEe
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKV-LQFQTNRCPICRQPVER--LLEIK  272 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~-l~~~~~~CPiCR~~i~~--~~~i~  272 (279)
                      ..-..|.+|.++.+|+++.-|||. ||..|++. +..+..+||.|...|..  +.+|+
T Consensus       641 K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~  697 (698)
T KOG0978|consen  641 KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH  697 (698)
T ss_pred             HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence            355689999999999999999999 99999997 44456899999999865  45554

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=1.3e-05  Score=74.61  Aligned_cols=49  Identities=27%  Similarity=0.669  Sum_probs=45.2

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      .++..|.||+..+.++++.||+|. -|..|+.+..++.+.|=.|...|..
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence            567899999999999999999999 8999999988888999999998875

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=1.1e-05  Score=73.69  Aligned_cols=51  Identities=29%  Similarity=0.669  Sum_probs=43.0

Q ss_pred             CCccccccccCCCccEEecCCCcccCHHHHHHHH-hcCCCCccccccccceEE
Q 023674          219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQ-FQTNRCPICRQPVERLLE  270 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~-~~~~~CPiCR~~i~~~~~  270 (279)
                      ...+|.||+....-.+.|+|+|. ||..|++... ..+..|++||.+|.+.+.
T Consensus         6 ~~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i~   57 (324)
T KOG0824|consen    6 KKKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTID   57 (324)
T ss_pred             cCCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcchh
Confidence            35799999999988899999999 9999999743 345669999999988553

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=1.6e-05  Score=74.99  Aligned_cols=57  Identities=30%  Similarity=0.661  Sum_probs=44.6

Q ss_pred             CCCccccccccCCCccE-----E---ecCCCcccCHHHHHHHH--hc-----CCCCccccccccceEEE--ecCC
Q 023674          218 DSGKECVICLSEPRDTT-----V---LPCRHMCMCSECAKVLQ--FQ-----TNRCPICRQPVERLLEI--KVNN  275 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~-----~---lPCgH~~~C~~C~~~l~--~~-----~~~CPiCR~~i~~~~~i--~~~~  275 (279)
                      ..+++|.|||+...+..     +   .+|.|. ||..|+..|+  .+     +..||+||.....+..-  |+.+
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t  232 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVET  232 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccccceeeee
Confidence            45679999999876655     4   679999 9999999999  45     46799999987765432  5554

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.70  E-value=2.9e-05  Score=71.90  Aligned_cols=47  Identities=26%  Similarity=0.722  Sum_probs=34.8

Q ss_pred             CccccccccC---CCccE--EecCCCcccCHHHHHHHHh-cCCCCccccccccc
Q 023674          220 GKECVICLSE---PRDTT--VLPCRHMCMCSECAKVLQF-QTNRCPICRQPVER  267 (279)
Q Consensus       220 ~~~C~IC~~~---~~~~~--~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~~i~~  267 (279)
                      +..|.||.+.   ..++.  +.+|||. ||..|+..++. ....||.|+..+..
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence            4579999984   22322  2279999 99999999654 34679999987764

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=4.7e-06  Score=77.60  Aligned_cols=59  Identities=29%  Similarity=0.589  Sum_probs=48.1

Q ss_pred             CCCccccccccCCCccEEe-cCCCcccCHHHHHH-HHhcCCCCccccccccceEEEecCCCC
Q 023674          218 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKV-LQFQTNRCPICRQPVERLLEIKVNNAA  277 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~-l~~~~~~CPiCR~~i~~~~~i~~~~~~  277 (279)
                      ..+..|.||++-.+.++.. -|.|. ||.+|+.. ++...+.||.||+...+...+..+.++
T Consensus        41 ~~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~f  101 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNF  101 (381)
T ss_pred             hhhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccccccCCCCccH
Confidence            3467899999998887665 49999 99999987 666678899999999887777666554

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.49  E-value=9e-05  Score=56.05  Aligned_cols=46  Identities=28%  Similarity=0.543  Sum_probs=34.2

Q ss_pred             CccccccccCCC-----------c--cEEecCCCcccCHHHHHHHHhc---CCCCcccccccc
Q 023674          220 GKECVICLSEPR-----------D--TTVLPCRHMCMCSECAKVLQFQ---TNRCPICRQPVE  266 (279)
Q Consensus       220 ~~~C~IC~~~~~-----------~--~~~lPCgH~~~C~~C~~~l~~~---~~~CPiCR~~i~  266 (279)
                      +..|-||+..+.           +  .++--|+|. |+..|+.+|..+   ...||+||+..+
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence            446777765443           2  355579999 999999999875   367999999764

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=9e-05  Score=71.20  Aligned_cols=49  Identities=33%  Similarity=0.699  Sum_probs=44.3

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      ..+.+|.||+...-..+.+||||. +|..|+.+...+...||+||..+..
T Consensus        82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence            567899999999999999999999 9999998877778899999998875

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=9.4e-05  Score=71.65  Aligned_cols=49  Identities=29%  Similarity=0.720  Sum_probs=38.8

Q ss_pred             CCCccccccccCC-----------------CccEEecCCCcccCHHHHHHHHh-cCCCCccccccccc
Q 023674          218 DSGKECVICLSEP-----------------RDTTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~-----------------~~~~~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~~i~~  267 (279)
                      +....|+|||+..                 ++-++.||.|+ |+..|+..|.. .+-.||+||.++-.
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence            5567899999742                 23456799999 99999999987 44589999998743

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=97.31  E-value=8.2e-05  Score=51.52  Aligned_cols=46  Identities=37%  Similarity=0.813  Sum_probs=39.0

Q ss_pred             CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      ....|+.|......-+++||||+ +|..|....+  -+-||+|-.+|+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~r--YngCPfC~~~~~~   51 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGER--YNGCPFCGTPFEF   51 (55)
T ss_pred             cceeEEEccccccccccccccce-eeccccChhh--ccCCCCCCCcccC
Confidence            34679999999888999999999 9999988765  3589999988763

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.31  E-value=0.00019  Score=68.87  Aligned_cols=46  Identities=22%  Similarity=0.538  Sum_probs=36.8

Q ss_pred             CCCccccccccCCCc----cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674          218 DSGKECVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~----~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~  266 (279)
                      .+-..|.||+++.-+    ++...|.|. |...|+..|+  ..+||+||-...
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~~c~Hs-fh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTILCNHS-FHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCccccceeeeecccc-cchHHHhhcc--cCcChhhhhhcC
Confidence            566889999998754    245679999 9999999997  458999996443

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.08  E-value=0.00046  Score=46.96  Aligned_cols=40  Identities=33%  Similarity=0.767  Sum_probs=32.2

Q ss_pred             ccccccc--CCCccEEecCC-----CcccCHHHHHHHHhcC--CCCcccc
Q 023674          222 ECVICLS--EPRDTTVLPCR-----HMCMCSECAKVLQFQT--NRCPICR  262 (279)
Q Consensus       222 ~C~IC~~--~~~~~~~lPCg-----H~~~C~~C~~~l~~~~--~~CPiCR  262 (279)
                      .|.||++  ...+..+.||.     |. ++..|+..|...+  .+|++|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence            4899997  55567788996     66 8999999998654  4799995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.06  E-value=0.00028  Score=61.19  Aligned_cols=52  Identities=23%  Similarity=0.441  Sum_probs=44.3

Q ss_pred             CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674          219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI  271 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i  271 (279)
                      --..|.||-..++..++.-|||. ||..|+..-......|-+|-....+...+
T Consensus       195 IPF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V  246 (259)
T COG5152         195 IPFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV  246 (259)
T ss_pred             Cceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence            34589999999999999999999 99999998666678999998877665544

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.87  E-value=0.00016  Score=51.76  Aligned_cols=43  Identities=28%  Similarity=0.805  Sum_probs=23.3

Q ss_pred             CccccccccCCCccE-EecCCCcccCHHHHHHHHhcCCCCccccccc
Q 023674          220 GKECVICLSEPRDTT-VLPCRHMCMCSECAKVLQFQTNRCPICRQPV  265 (279)
Q Consensus       220 ~~~C~IC~~~~~~~~-~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i  265 (279)
                      ...|.+|.+-.++.+ +.-|.|. ||+.|+..-.  ...||+|+.+.
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~--~~~CPvC~~Pa   50 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCI--GSECPVCHTPA   50 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS---B-TTTGGGGT--TTB-SSS--B-
T ss_pred             hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhc--CCCCCCcCChH
Confidence            468999999999975 6789999 9999997632  35699999874

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.00046  Score=63.15  Aligned_cols=50  Identities=24%  Similarity=0.501  Sum_probs=43.5

Q ss_pred             CccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEE
Q 023674          220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLE  270 (279)
Q Consensus       220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~  270 (279)
                      ...|-||...+.+.|+.-|+|. ||..|+..-...+..|.+|-+.+.++..
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~  290 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFN  290 (313)
T ss_pred             CccccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccc
Confidence            3459999999999999999999 9999999866667899999998877554

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=96.53  E-value=0.00063  Score=69.21  Aligned_cols=52  Identities=21%  Similarity=0.434  Sum_probs=41.8

Q ss_pred             CCccccccccCCCccEE---ecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674          219 SGKECVICLSEPRDTTV---LPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI  271 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~---lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i  271 (279)
                      ....|.+|+....|-.+   .+|+|. ||..|+..|.....+||+||..|..++..
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~  176 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKVL  176 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeeee
Confidence            34578888877766433   479999 99999999999889999999988765543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.0049  Score=56.03  Aligned_cols=51  Identities=29%  Similarity=0.681  Sum_probs=40.7

Q ss_pred             CCCccccccccCCCccE-EecCCCcccCHHHHHHHHh--cCCCCccccccccceE
Q 023674          218 DSGKECVICLSEPRDTT-VLPCRHMCMCSECAKVLQF--QTNRCPICRQPVERLL  269 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~-~lPCgH~~~C~~C~~~l~~--~~~~CPiCR~~i~~~~  269 (279)
                      ..+.+|.+|-+.+.... +.+|||. +|..|+..-+.  -+-+||.|-..+..+.
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq  290 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEPLQ  290 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcchh
Confidence            67789999999998864 4569999 99999987443  2458999998877544

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.13  E-value=0.0022  Score=61.90  Aligned_cols=53  Identities=32%  Similarity=0.700  Sum_probs=45.5

Q ss_pred             CCCccccccccCCCccEE-ecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674          218 DSGKECVICLSEPRDTTV-LPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI  271 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~-lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i  271 (279)
                      +++..|.+|+...++.+. ..|||. ||..|+..|......||.||..+.....+
T Consensus        19 ~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~~   72 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEEL   72 (391)
T ss_pred             cccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhcc
Confidence            566899999999999888 599999 99999999998888999998877654443

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.09  E-value=0.0073  Score=57.73  Aligned_cols=33  Identities=36%  Similarity=0.837  Sum_probs=28.3

Q ss_pred             CCCccccccccCCCc---cEEecCCCcccCHHHHHHH
Q 023674          218 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVL  251 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l  251 (279)
                      .....|.||++...-   ..++||+|. ||..|++..
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY  217 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDY  217 (445)
T ss_pred             hhcccceeeehhhcCcceeeecccchH-HHHHHHHHH
Confidence            566789999987654   789999999 999999874

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.89  E-value=0.0045  Score=41.90  Aligned_cols=42  Identities=33%  Similarity=0.810  Sum_probs=21.4

Q ss_pred             ccccccCC--CccEEec--CCCcccCHHHHHHHHh-cCCCCccccccc
Q 023674          223 CVICLSEP--RDTTVLP--CRHMCMCSECAKVLQF-QTNRCPICRQPV  265 (279)
Q Consensus       223 C~IC~~~~--~~~~~lP--CgH~~~C~~C~~~l~~-~~~~CPiCR~~i  265 (279)
                      |.+|.+..  ++..++|  ||+. +|..|...++. ....||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence            56677654  4455666  7888 99999999876 468899999864

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=95.85  E-value=0.0031  Score=57.93  Aligned_cols=48  Identities=31%  Similarity=0.666  Sum_probs=34.7

Q ss_pred             CCccccccccCCCc---cEEecCCCcccCHHHHHHH------------------Hhc-----CCCCccccccccc
Q 023674          219 SGKECVICLSEPRD---TTVLPCRHMCMCSECAKVL------------------QFQ-----TNRCPICRQPVER  267 (279)
Q Consensus       219 ~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l------------------~~~-----~~~CPiCR~~i~~  267 (279)
                      ....|+||+--+.+   .++.+|-|. |+..|+.+.                  +..     ...||+||..|..
T Consensus       114 p~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~  187 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI  187 (368)
T ss_pred             CCCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence            35689999976654   678899999 999996542                  111     1359999998853

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.70  E-value=0.0053  Score=63.94  Aligned_cols=48  Identities=23%  Similarity=0.620  Sum_probs=36.3

Q ss_pred             CCCccccccccCCC-------ccEEecCCCcccCHHHHHHHHhcC--CCCcccccccc
Q 023674          218 DSGKECVICLSEPR-------DTTVLPCRHMCMCSECAKVLQFQT--NRCPICRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~~~-------~~~~lPCgH~~~C~~C~~~l~~~~--~~CPiCR~~i~  266 (279)
                      +...||.||++-..       +-+---|+|- |+..|+-.|...+  ++||+||..|.
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCccccccc
Confidence            34578999997433       1223349999 9999999998764  67999998765

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.68  E-value=0.012  Score=53.67  Aligned_cols=56  Identities=21%  Similarity=0.431  Sum_probs=44.3

Q ss_pred             CCCccccccccCCC----ccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEecCC
Q 023674          218 DSGKECVICLSEPR----DTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNN  275 (279)
Q Consensus       218 ~~~~~C~IC~~~~~----~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~~~  275 (279)
                      .....|.|....+.    -+.+++|||. |+..++..+. ....||+|-.++...=.|.++.
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp  170 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK-KSKKCPVCGKPFTEEDIIPLNP  170 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc-ccccccccCCccccCCEEEecC
Confidence            56678999987763    3677899999 9999999995 4567999999998765555544

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.0037  Score=56.66  Aligned_cols=49  Identities=24%  Similarity=0.569  Sum_probs=38.4

Q ss_pred             CCCccccccccCCC----------ccEEecCCCcccCHHHHHHHHhc--CCCCccccccccc
Q 023674          218 DSGKECVICLSEPR----------DTTVLPCRHMCMCSECAKVLQFQ--TNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~----------~~~~lPCgH~~~C~~C~~~l~~~--~~~CPiCR~~i~~  267 (279)
                      .++..|.||-....          ++--|.|+|. |+..|++.|..-  +.+||.|+..|+.
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence            45678999986543          3446899999 999999999753  4679999988764

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=95.43  E-value=0.0033  Score=45.93  Aligned_cols=46  Identities=28%  Similarity=0.574  Sum_probs=22.1

Q ss_pred             CccccccccCCC-c--c--EEe---cCCCcccCHHHHHHHHhc-----------CCCCcccccccc
Q 023674          220 GKECVICLSEPR-D--T--TVL---PCRHMCMCSECAKVLQFQ-----------TNRCPICRQPVE  266 (279)
Q Consensus       220 ~~~C~IC~~~~~-~--~--~~l---PCgH~~~C~~C~~~l~~~-----------~~~CPiCR~~i~  266 (279)
                      +.+|.||++..- +  .  ++-   .|+.. |+..|+.+|...           ..+||.|+++|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            468999998654 2  1  121   47888 999999999653           135999999875

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=0.0088  Score=56.80  Aligned_cols=46  Identities=26%  Similarity=0.645  Sum_probs=33.0

Q ss_pred             ccccccccCCCc----c-EEecCCCcccCHHHHHHHHhc--C-CCCccccccccce
Q 023674          221 KECVICLSEPRD----T-TVLPCRHMCMCSECAKVLQFQ--T-NRCPICRQPVERL  268 (279)
Q Consensus       221 ~~C~IC~~~~~~----~-~~lPCgH~~~C~~C~~~l~~~--~-~~CPiCR~~i~~~  268 (279)
                      .+|.||-+ .++    . .+--|||. |+..|+..|...  + ..||+||-.+...
T Consensus         5 A~C~Ic~d-~~p~~~~l~~i~~cGhi-fh~~cl~qwfe~~Ps~R~cpic~ik~~~r   58 (465)
T KOG0827|consen    5 AECHICID-GRPNDHELGPIGTCGHI-FHTTCLTQWFEGDPSNRGCPICQIKLQER   58 (465)
T ss_pred             ceeeEecc-CCccccccccccchhhH-HHHHHHHHHHccCCccCCCCceeecccce
Confidence            58999944 333    2 23349999 999999999864  2 5799999444443

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=95.31  E-value=0.009  Score=57.52  Aligned_cols=36  Identities=33%  Similarity=0.795  Sum_probs=31.9

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ  254 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~  254 (279)
                      +++..|.||-.-+++.++|+|+|. +|..|+.....+
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~-lc~~ca~~~~~~   37 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHN-LCQACARNILVQ   37 (699)
T ss_pred             cccccCceehhhccCceEeecccH-HHHHHHHhhccc
Confidence            456789999999999999999999 999999986544

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=94.97  E-value=0.02  Score=46.90  Aligned_cols=50  Identities=26%  Similarity=0.525  Sum_probs=36.3

Q ss_pred             CccccccccCCCc---cEEecCC------CcccCHHHHHHHHhcCCCCccccccccceEEEecCC
Q 023674          220 GKECVICLSEPRD---TTVLPCR------HMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNN  275 (279)
Q Consensus       220 ~~~C~IC~~~~~~---~~~lPCg------H~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~~~  275 (279)
                      ..||.||+++..+   ++.+.||      |+ ||.+|.++|....+     |.++.+.++.+.+.
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkm-fc~~C~~rw~~~~~-----rDPfnR~I~y~F~f   84 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKM-FCADCDKRWRRERN-----RDPFNRNIKYWFNF   84 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHH-HHHHHHHHHHhhcc-----CCCcccceEEEEeC
Confidence            5799999987655   6777887      77 99999999964332     45566666665543

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=94.87  E-value=0.0071  Score=56.30  Aligned_cols=50  Identities=22%  Similarity=0.557  Sum_probs=42.0

Q ss_pred             CCCccccccccCCCccE-EecCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674          218 DSGKECVICLSEPRDTT-VLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL  268 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~-~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~  268 (279)
                      .....|.+|-.-..|++ +.-|-|. ||..|+.......+.||.|...|...
T Consensus        13 n~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             ccceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCc
Confidence            34578999999999854 4569999 99999998777788999999888765

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=94.81  E-value=0.029  Score=41.88  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=28.0

Q ss_pred             EEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674          234 TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE  266 (279)
Q Consensus       234 ~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~  266 (279)
                      +.--|.|. |..-|+.+|....+.||+||+...
T Consensus        50 ~wG~CnHa-FH~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          50 VWGVCNHA-FHDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             EEEecchH-HHHHHHHHHHhhCCCCCCCCceeE
Confidence            44469999 999999999999999999998754

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=94.60  E-value=0.05  Score=45.79  Aligned_cols=52  Identities=27%  Similarity=0.635  Sum_probs=37.7

Q ss_pred             CccccccccCCCccEEecCC-Ccc-----------cCHHHHHHHHhc-------------------------------CC
Q 023674          220 GKECVICLSEPRDTTVLPCR-HMC-----------MCSECAKVLQFQ-------------------------------TN  256 (279)
Q Consensus       220 ~~~C~IC~~~~~~~~~lPCg-H~~-----------~C~~C~~~l~~~-------------------------------~~  256 (279)
                      +-.|.|||+-+-++|||-|. |--           -...|+++..+.                               .-
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L   81 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL   81 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence            45799999999999998874 211           246777765321                               12


Q ss_pred             CCccccccccceEEE
Q 023674          257 RCPICRQPVERLLEI  271 (279)
Q Consensus       257 ~CPiCR~~i~~~~~i  271 (279)
                      .||+||..|.+-..|
T Consensus        82 ~CPLCRG~V~GWtvv   96 (162)
T PF07800_consen   82 ACPLCRGEVKGWTVV   96 (162)
T ss_pred             cCccccCceeceEEc
Confidence            499999999987766

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=0.024  Score=52.21  Aligned_cols=45  Identities=36%  Similarity=0.759  Sum_probs=36.5

Q ss_pred             CccccccccCCCc------cEEecCCCcccCHHHHHHHHhcC-CCCccccccc
Q 023674          220 GKECVICLSEPRD------TTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPV  265 (279)
Q Consensus       220 ~~~C~IC~~~~~~------~~~lPCgH~~~C~~C~~~l~~~~-~~CPiCR~~i  265 (279)
                      ..+|.||-+.+++      ..+|-|||. +|..|+..+...+ ..||.||...
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKCGHT-ICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCceeecCccccccCcccCCcccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence            3579999987765      467789999 9999999977654 5699999985

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.41  E-value=0.045  Score=49.21  Aligned_cols=53  Identities=17%  Similarity=0.286  Sum_probs=43.6

Q ss_pred             CCCccccccccCCCc----cEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674          218 DSGKECVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI  271 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~----~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i  271 (279)
                      +....|.||.+...+    +++-+|||. +|.+|+..+...-..||+|-.+....--|
T Consensus       219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkdrdiI  275 (303)
T KOG3039|consen  219 SKRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKDRDII  275 (303)
T ss_pred             ccceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcccceE
Confidence            356789999988776    466799999 99999999987778899999888764433

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.29  E-value=0.019  Score=56.59  Aligned_cols=49  Identities=24%  Similarity=0.595  Sum_probs=40.0

Q ss_pred             CCCCccccccccCCCccEEecCCCcccCHHHHHHHHh-----cCCCCcccccccc
Q 023674          217 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-----QTNRCPICRQPVE  266 (279)
Q Consensus       217 ~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~-----~~~~CPiCR~~i~  266 (279)
                      +....+|.+|-+...|.+...|.|. ||.-|++....     ..-+||.|-..++
T Consensus       533 nk~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  533 NKGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             ccCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            3566799999999999999999999 99999987543     2357999976543

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.14  E-value=0.052  Score=45.76  Aligned_cols=48  Identities=25%  Similarity=0.413  Sum_probs=37.0

Q ss_pred             CCCccccccccCCCccEEecCCCcc----cCHHHHHHHHhcC--CCCcccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMC----MCSECAKVLQFQT--NRCPICRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~----~C~~C~~~l~~~~--~~CPiCR~~i~  266 (279)
                      ..+.+|-||++...+ ...||...+    .+.+|++.|...+  ..|.+|+....
T Consensus         6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            567899999988754 346887642    5899999998764  56999998753

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=94.09  E-value=0.03  Score=45.78  Aligned_cols=50  Identities=24%  Similarity=0.533  Sum_probs=40.7

Q ss_pred             CCCccccccccCCCccEEec----CCCcccCHHHHHHHHhc---CCCCccccccccce
Q 023674          218 DSGKECVICLSEPRDTTVLP----CRHMCMCSECAKVLQFQ---TNRCPICRQPVERL  268 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lP----CgH~~~C~~C~~~l~~~---~~~CPiCR~~i~~~  268 (279)
                      ..--+|-||.+...|-.+|-    ||-. +|..|-..||+-   ...||+|+..+.+.
T Consensus        78 ~~lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   78 PKLYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             CCceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCccccccccc
Confidence            35578999999999988874    8877 999998886654   35699999988764

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.02  E-value=0.02  Score=51.29  Aligned_cols=42  Identities=31%  Similarity=0.917  Sum_probs=30.0

Q ss_pred             cccccccCCC-c-cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674          222 ECVICLSEPR-D-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE  266 (279)
Q Consensus       222 ~C~IC~~~~~-~-~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~  266 (279)
                      -|-.|.-... + .-++-|+|+ ||..|...-.  ...|++|+..|.
T Consensus         5 hCn~C~~~~~~~~f~LTaC~Hv-fC~~C~k~~~--~~~C~lCkk~ir   48 (233)
T KOG4739|consen    5 HCNKCFRFPSQDPFFLTACRHV-FCEPCLKASS--PDVCPLCKKSIR   48 (233)
T ss_pred             EeccccccCCCCceeeeechhh-hhhhhcccCC--ccccccccceee
Confidence            4666664433 2 356689999 9999988643  128999999854

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.01  E-value=0.024  Score=38.08  Aligned_cols=44  Identities=25%  Similarity=0.785  Sum_probs=26.7

Q ss_pred             cccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       222 ~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      -|.-|+-+.+..+  -|.-..+|..|+..|...+..|+||..++-.
T Consensus         4 nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt   47 (50)
T PF03854_consen    4 NCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPT   47 (50)
T ss_dssp             ---SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred             cChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence            4778887776644  5764449999999999999999999887644

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=93.90  E-value=0.023  Score=58.42  Aligned_cols=45  Identities=31%  Similarity=0.678  Sum_probs=37.6

Q ss_pred             ccccccccCCCccEEecCCCcccCHHHHHHHHhc--CCCCccccccccc
Q 023674          221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ--TNRCPICRQPVER  267 (279)
Q Consensus       221 ~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~--~~~CPiCR~~i~~  267 (279)
                      ..|.||++ ..+.++..|+|. +|.+|.......  ...|++||..+..
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence            79999999 888889999999 999999885443  2469999987754

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=93.41  E-value=0.043  Score=59.67  Aligned_cols=50  Identities=26%  Similarity=0.730  Sum_probs=39.0

Q ss_pred             CCCccccccccCCCc---cEEecCCCcccCHHHHHHHHhc----------CCCCccccccccce
Q 023674          218 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQ----------TNRCPICRQPVERL  268 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~~----------~~~CPiCR~~i~~~  268 (279)
                      +.+..|+||+.+.-.   .+-|-|+|+ |+..|.+.+..+          ...||+|...|...
T Consensus      3484 D~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred             ccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence            556789999987543   577899999 999998875432          35799999988753

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=92.85  E-value=0.061  Score=50.45  Aligned_cols=47  Identities=26%  Similarity=0.752  Sum_probs=35.2

Q ss_pred             CccccccccCCC--ccEEe--cCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674          220 GKECVICLSEPR--DTTVL--PCRHMCMCSECAKVLQFQ-TNRCPICRQPVER  267 (279)
Q Consensus       220 ~~~C~IC~~~~~--~~~~l--PCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~  267 (279)
                      +..|..|++...  |--|.  +||-. +|..|...++.. ..+||-||.....
T Consensus        14 ed~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          14 EDYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             cccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence            445999998653  33454  57888 899999888765 5789999987654

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.85  E-value=0.069  Score=41.76  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=25.9

Q ss_pred             EecCCCcccCHHHHHHHHhcCCCCcccccc
Q 023674          235 VLPCRHMCMCSECAKVLQFQTNRCPICRQP  264 (279)
Q Consensus       235 ~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~  264 (279)
                      .--|.|. |+.-|+.+|.++.+.||+|.+.
T Consensus        78 WG~CNHa-FH~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   78 WGVCNHA-FHFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             eeecchH-HHHHHHHHHHhhcCcCCCcCcc
Confidence            3469999 9999999999999999999764

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=92.72  E-value=0.099  Score=48.83  Aligned_cols=53  Identities=25%  Similarity=0.612  Sum_probs=39.1

Q ss_pred             CCCccccccccCCCccEEec-CCCcccCHHHHHHHHhcCCCCcccccc--ccceEEE
Q 023674          218 DSGKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQTNRCPICRQP--VERLLEI  271 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lP-CgH~~~C~~C~~~l~~~~~~CPiCR~~--i~~~~~i  271 (279)
                      .+...|.||+....+.+++- -|-. ||..|+.......+.||+--.+  +..++++
T Consensus       298 ~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl  353 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVVNYGHCPVTGYPASVDHLIRL  353 (357)
T ss_pred             CccccChhHHhccCCCceEEecceE-EeHHHHHHHHHhcCCCCccCCcchHHHHHHH
Confidence            56678999998888765555 4666 9999999988788999985443  3344443

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=92.60  E-value=0.079  Score=49.35  Aligned_cols=46  Identities=28%  Similarity=0.821  Sum_probs=38.0

Q ss_pred             CCCccccccccCCCccEEecC--CCcccCHHHHHHHHhcCCCCccccccccce
Q 023674          218 DSGKECVICLSEPRDTTVLPC--RHMCMCSECAKVLQFQTNRCPICRQPVERL  268 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPC--gH~~~C~~C~~~l~~~~~~CPiCR~~i~~~  268 (279)
                      .+-.+|.||.+...-.++ -|  ||+ .|..|...+   .++||.||.+|..+
T Consensus        46 ~~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~---~~~CP~Cr~~~g~~   93 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKV---SNKCPTCRLPIGNI   93 (299)
T ss_pred             hhhccCchhhccCcccce-ecCCCcE-ehhhhhhhh---cccCCccccccccH
Confidence            456789999999988766 45  899 999999766   37999999998743

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]

Probab=92.53  E-value=0.1  Score=48.47  Aligned_cols=52  Identities=12%  Similarity=-0.094  Sum_probs=44.2

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI  271 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i  271 (279)
                      -...+|.+|-...-.+++.+|+|.-+|.+|+..  .....|++|..-+..+++|
T Consensus       341 ~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~--s~~~~~~~c~~~~~~~~~i  392 (394)
T KOG2113|consen  341 MSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA--SASPTSSTCDHNDHTLVPI  392 (394)
T ss_pred             hhhcccccccCceeeeEeecCCcccChhhhhhc--ccCCccccccccceeeeec
Confidence            456789999999999999999999999999983  3357899998877777766

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.28  E-value=0.1  Score=49.99  Aligned_cols=45  Identities=29%  Similarity=0.693  Sum_probs=35.9

Q ss_pred             CCccccccccCCCc-----cEEecCCCcccCHHHHHHHHhc--CCCCcccccc
Q 023674          219 SGKECVICLSEPRD-----TTVLPCRHMCMCSECAKVLQFQ--TNRCPICRQP  264 (279)
Q Consensus       219 ~~~~C~IC~~~~~~-----~~~lPCgH~~~C~~C~~~l~~~--~~~CPiCR~~  264 (279)
                      .+..|.||++....     ++.+-|||+ |=..|++.|.-+  ...||.|...
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghl-Fgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHL-FGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeeccccc-ccHHHHHHHHhhhhhhhCcccCCh
Confidence            46789999986543     567789999 999999999854  2569999764

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=92.19  E-value=0.17  Score=48.17  Aligned_cols=48  Identities=25%  Similarity=0.605  Sum_probs=34.5

Q ss_pred             CCCccccccccCCCccEEe-cC---------------------CCcccCHHHHHHHHh-------------cCCCCcccc
Q 023674          218 DSGKECVICLSEPRDTTVL-PC---------------------RHMCMCSECAKVLQF-------------QTNRCPICR  262 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~l-PC---------------------gH~~~C~~C~~~l~~-------------~~~~CPiCR  262 (279)
                      ++...|.-||.+..++.+. -|                     +=| -|.+|+.+|..             .+..||.||
T Consensus       269 ~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPm-WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCR  347 (358)
T PF10272_consen  269 QELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPM-WCLECMGKWFASRQDQQHPETWLSGKCPCPTCR  347 (358)
T ss_pred             cccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccch-HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCc
Confidence            4566899999999888775 23                     222 38899888742             235699999


Q ss_pred             cccc
Q 023674          263 QPVE  266 (279)
Q Consensus       263 ~~i~  266 (279)
                      +.+.
T Consensus       348 a~FC  351 (358)
T PF10272_consen  348 AKFC  351 (358)
T ss_pred             ccce
Confidence            9764

They are purported to be transmembrane protein-precursors but their function is unknown.

>PHA02862 5L protein; Provisional

Probab=91.91  E-value=0.13  Score=42.74  Aligned_cols=46  Identities=15%  Similarity=0.351  Sum_probs=35.0

Q ss_pred             CccccccccCCCccEEecCCCcc----cCHHHHHHHHhcC--CCCcccccccc
Q 023674          220 GKECVICLSEPRDTTVLPCRHMC----MCSECAKVLQFQT--NRCPICRQPVE  266 (279)
Q Consensus       220 ~~~C~IC~~~~~~~~~lPCgH~~----~C~~C~~~l~~~~--~~CPiCR~~i~  266 (279)
                      +..|-||++...+. +-||+...    .+.+|+.+|...+  ..|++|+.+..
T Consensus         2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            45899999987554 57887532    6899999998653  56999998763

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=91.44  E-value=0.049  Score=50.45  Aligned_cols=49  Identities=31%  Similarity=0.699  Sum_probs=34.6

Q ss_pred             CccccccccCCCc-cEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674          220 GKECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI  271 (279)
Q Consensus       220 ~~~C~IC~~~~~~-~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i  271 (279)
                      .-.|.-|---... -.++||.|. ||.+||..-.  .+.||.|-..|.++..+
T Consensus        90 VHfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~--dK~Cp~C~d~VqrIeq~  139 (389)
T KOG2932|consen   90 VHFCDRCDFPIAIYGRMIPCKHV-FCLECARSDS--DKICPLCDDRVQRIEQI  139 (389)
T ss_pred             eEeecccCCcceeeecccccchh-hhhhhhhcCc--cccCcCcccHHHHHHHh
Confidence            3457777544333 356799999 9999998632  35799998888765544

>PHA03096 p28-like protein; Provisional

Probab=91.40  E-value=0.11  Score=47.98  Aligned_cols=42  Identities=24%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             ccccccccCCC--------ccEEecCCCcccCHHHHHHHHhcC---CCCccccc
Q 023674          221 KECVICLSEPR--------DTTVLPCRHMCMCSECAKVLQFQT---NRCPICRQ  263 (279)
Q Consensus       221 ~~C~IC~~~~~--------~~~~lPCgH~~~C~~C~~~l~~~~---~~CPiCR~  263 (279)
                      .+|-|||+...        ..++--|.|. ||..|+..|+...   ..|+.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~-fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHE-FNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcH-HHHHHHHHHHHhhhhcccCccccc
Confidence            78999997543        3456679999 9999999998653   33555544

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.99  E-value=0.086  Score=39.06  Aligned_cols=29  Identities=28%  Similarity=0.649  Sum_probs=23.8

Q ss_pred             cCCCcccCHHHHHHHHhc---CCCCcccccccc
Q 023674          237 PCRHMCMCSECAKVLQFQ---TNRCPICRQPVE  266 (279)
Q Consensus       237 PCgH~~~C~~C~~~l~~~---~~~CPiCR~~i~  266 (279)
                      -|.|. |..-|+.+|...   ...||+||+...
T Consensus        50 ~C~h~-fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   50 YCLHA-FHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             HHHHH-HHHHHHHHHhcCccccccCCcchheeE
Confidence            59999 999999998754   256999998653

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=89.49  E-value=0.19  Score=33.74  Aligned_cols=39  Identities=28%  Similarity=0.732  Sum_probs=25.3

Q ss_pred             ccccccCCCc--cEEecCCCcc----cCHHHHHHHHhc--CCCCccc
Q 023674          223 CVICLSEPRD--TTVLPCRHMC----MCSECAKVLQFQ--TNRCPIC  261 (279)
Q Consensus       223 C~IC~~~~~~--~~~lPCgH~~----~C~~C~~~l~~~--~~~CPiC  261 (279)
                      |.||++...+  ..+.||+-..    .+.+|+..|...  ..+|.+|
T Consensus         1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            7899976543  4678987442    689999999874  4568887

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=88.98  E-value=0.33  Score=44.70  Aligned_cols=29  Identities=24%  Similarity=0.657  Sum_probs=23.8

Q ss_pred             ecCCCcccCHHHHHHHHhc-CCCCccccccc
Q 023674          236 LPCRHMCMCSECAKVLQFQ-TNRCPICRQPV  265 (279)
Q Consensus       236 lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i  265 (279)
                      -+|||. +|.+|...+... ...||.|-..+
T Consensus        21 n~C~H~-lCEsCvd~iF~~g~~~CpeC~~iL   50 (300)
T KOG3800|consen   21 NECGHR-LCESCVDRIFSLGPAQCPECMVIL   50 (300)
T ss_pred             ccccch-HHHHHHHHHHhcCCCCCCcccchh
Confidence            389999 999999998765 46799997643

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=88.92  E-value=0.2  Score=46.36  Aligned_cols=43  Identities=30%  Similarity=0.753  Sum_probs=35.0

Q ss_pred             CccccccccCCCccEEec-CCCcccCHHHHHH-HHhcCCCCccccc
Q 023674          220 GKECVICLSEPRDTTVLP-CRHMCMCSECAKV-LQFQTNRCPICRQ  263 (279)
Q Consensus       220 ~~~C~IC~~~~~~~~~lP-CgH~~~C~~C~~~-l~~~~~~CPiCR~  263 (279)
                      ...|..|-...++.+-.+ |+|. ||.+|+.. |....-.||.|..
T Consensus       274 ~LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         274 SLKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             cccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence            478999999988887775 7899 99999997 4444467999966

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=88.84  E-value=0.095  Score=50.05  Aligned_cols=48  Identities=23%  Similarity=0.580  Sum_probs=37.1

Q ss_pred             CCCccccccccC----CCccEEecCCCcccCHHHHHHHHhcC--CCCcccccccc
Q 023674          218 DSGKECVICLSE----PRDTTVLPCRHMCMCSECAKVLQFQT--NRCPICRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~----~~~~~~lPCgH~~~C~~C~~~l~~~~--~~CPiCR~~i~  266 (279)
                      +.+.-|-.|-+.    ..+.-.|||.|+ |+..|+.++..+.  .+||-||.-+.
T Consensus       363 e~~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~CrklrS  416 (518)
T KOG1941|consen  363 ETELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKLRS  416 (518)
T ss_pred             HHhhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHHHh
Confidence            566789999864    345667899999 9999999866553  67999995444

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=88.81  E-value=0.28  Score=34.36  Aligned_cols=42  Identities=24%  Similarity=0.415  Sum_probs=28.6

Q ss_pred             CCCccccccccCCCccEEe-cCCCcccCHHHHHHHHhc--CCCCcc
Q 023674          218 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQ--TNRCPI  260 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~--~~~CPi  260 (279)
                      .....|.|.+....+.+.- -|||. |..+.+..+..+  ...||+
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence            3457899999999998775 89999 999999998733  356998

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=88.65  E-value=0.15  Score=45.81  Aligned_cols=46  Identities=30%  Similarity=0.782  Sum_probs=34.2

Q ss_pred             CCCccccccccCC---CccEEe--c-CCCcccCHHHHHHHHhcC-CCCc--ccccc
Q 023674          218 DSGKECVICLSEP---RDTTVL--P-CRHMCMCSECAKVLQFQT-NRCP--ICRQP  264 (279)
Q Consensus       218 ~~~~~C~IC~~~~---~~~~~l--P-CgH~~~C~~C~~~l~~~~-~~CP--iCR~~  264 (279)
                      ..+..|.||.+..   -|+.+|  | |-|. +|..|..++.... ..||  -|..-
T Consensus         8 ~~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~kI   62 (314)
T COG5220           8 MEDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGKI   62 (314)
T ss_pred             hhcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHHH
Confidence            4566899999753   244443  6 9999 9999999987665 5699  78553

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=88.05  E-value=0.21  Score=38.47  Aligned_cols=31  Identities=26%  Similarity=0.672  Sum_probs=25.2

Q ss_pred             CCCccccccccCCCc--cEEecCCCcccCHHHHH
Q 023674          218 DSGKECVICLSEPRD--TTVLPCRHMCMCSECAK  249 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~--~~~lPCgH~~~C~~C~~  249 (279)
                      +++..|.+|.....+  .++.||||. ++..|++
T Consensus        76 ~~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence            456789999987765  566799999 9999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]

Probab=87.14  E-value=0.51  Score=44.03  Aligned_cols=48  Identities=27%  Similarity=0.589  Sum_probs=32.4

Q ss_pred             CCCccccccccCCC-------------------ccEEecCCCcccCHHHHHHHHhc----------CCCCccccccccc
Q 023674          218 DSGKECVICLSEPR-------------------DTTVLPCRHMCMCSECAKVLQFQ----------TNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~-------------------~~~~lPCgH~~~C~~C~~~l~~~----------~~~CPiCR~~i~~  267 (279)
                      ..+.+|.+|+..-.                   +-.|-||||+  |.+=....|.+          ...||+|-+.+..
T Consensus       339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv--~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g  415 (429)
T KOG3842|consen  339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV--CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG  415 (429)
T ss_pred             cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc--cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence            45789999986432                   2356899997  66655553333          2459999887754

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=86.89  E-value=2.8  Score=41.52  Aligned_cols=6  Identities=17%  Similarity=-0.047  Sum_probs=2.5

Q ss_pred             CCCCCC
Q 023674            2 GNSGSH    7 (279)
Q Consensus         2 ~~~~s~    7 (279)
                      |+|.+.
T Consensus       349 g~~~~p  354 (569)
T KOG3671|consen  349 GPIPLP  354 (569)
T ss_pred             CCCCCC
Confidence            344444

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.92  E-value=0.34  Score=44.53  Aligned_cols=34  Identities=24%  Similarity=0.563  Sum_probs=28.9

Q ss_pred             CCccccccccCCCccEEecC----CCcccCHHHHHHHHh
Q 023674          219 SGKECVICLSEPRDTTVLPC----RHMCMCSECAKVLQF  253 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lPC----gH~~~C~~C~~~l~~  253 (279)
                      .-..|.+|.++..|+-|+-|    .|. ||+-|.++..+
T Consensus       267 apLcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSResIK  304 (352)
T KOG3579|consen  267 APLCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSRESIK  304 (352)
T ss_pred             CceeehhhhhhhccCceeecCCCcccc-eecccCHHHHH
Confidence            44789999999999999998    488 99999887443

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]

Probab=85.18  E-value=0.22  Score=46.32  Aligned_cols=54  Identities=17%  Similarity=0.201  Sum_probs=44.2

Q ss_pred             CCccccccccCCCccEEecCCCcccCHHHHHHH-HhcCCCCccccccccceEEEe
Q 023674          219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVL-QFQTNRCPICRQPVERLLEIK  272 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l-~~~~~~CPiCR~~i~~~~~i~  272 (279)
                      ..-.|++|+++...+++.+|+|-.||..|+... .++...|++|...+.....|.
T Consensus       135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i~  189 (394)
T KOG2113|consen  135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQIH  189 (394)
T ss_pred             CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhccc
Confidence            346799999999999999999999999998776 334456999988777766654

>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.94  E-value=0.2  Score=41.13  Aligned_cols=46  Identities=30%  Similarity=0.802  Sum_probs=28.1

Q ss_pred             CCCcccccccc-CCCccEEecCCCcc------cCHHHHHHHHhcCC----CCccccccccc
Q 023674          218 DSGKECVICLS-EPRDTTVLPCRHMC------MCSECAKVLQFQTN----RCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~-~~~~~~~lPCgH~~------~C~~C~~~l~~~~~----~CPiCR~~i~~  267 (279)
                      .++..|-||+. .+.|    -|||.|      +|..|--.+..+++    .|-+||...+-
T Consensus        63 ~ddatC~IC~KTKFAD----G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~i  119 (169)
T KOG3799|consen   63 GDDATCGICHKTKFAD----GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEI  119 (169)
T ss_pred             CcCcchhhhhhccccc----ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHH
Confidence            45678999995 3444    489975      35555444333333    38888876543

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.61  E-value=0.66  Score=42.11  Aligned_cols=48  Identities=25%  Similarity=0.547  Sum_probs=35.7

Q ss_pred             CCCccccccccCCCcc----EEecCCCcc----cCHHHHHHHHhcC--------CCCccccccc
Q 023674          218 DSGKECVICLSEPRDT----TVLPCRHMC----MCSECAKVLQFQT--------NRCPICRQPV  265 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~----~~lPCgH~~----~C~~C~~~l~~~~--------~~CPiCR~~i  265 (279)
                      +.++.|-||+...+|-    -+-||+...    .+..|+..|...+        -.|+.|++..
T Consensus        18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            6678999999877763    345887543    6899999997543        2499998754

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=83.12  E-value=1  Score=46.91  Aligned_cols=49  Identities=27%  Similarity=0.578  Sum_probs=38.2

Q ss_pred             CCCccccccccC--CCccEEecCCCcc----cCHHHHHHHHhc--CCCCcccccccc
Q 023674          218 DSGKECVICLSE--PRDTTVLPCRHMC----MCSECAKVLQFQ--TNRCPICRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~--~~~~~~lPCgH~~----~C~~C~~~l~~~--~~~CPiCR~~i~  266 (279)
                      +++..|.||..+  ..+..+.||+...    ++++|+.+|..-  ..+|-+|..+++
T Consensus        10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~   66 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK   66 (1175)
T ss_pred             ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence            556889999965  4468889998753    799999999864  367999987654

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.93  E-value=1.3  Score=39.49  Aligned_cols=47  Identities=28%  Similarity=0.586  Sum_probs=37.0

Q ss_pred             CccccccccC--CCccEEecCCCcccCHHHHHHHHhc--------CCCCccccccccc
Q 023674          220 GKECVICLSE--PRDTTVLPCRHMCMCSECAKVLQFQ--------TNRCPICRQPVER  267 (279)
Q Consensus       220 ~~~C~IC~~~--~~~~~~lPCgH~~~C~~C~~~l~~~--------~~~CPiCR~~i~~  267 (279)
                      ..-|..|-..  ..|++-|-|-|+ |+.+|..+|..+        .-.||.|.++|--
T Consensus        50 ~pNC~LC~t~La~gdt~RLvCyhl-fHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP  106 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTTRLVCYHL-FHWKCLNERAANLPANTAPAGYQCPCCSQEIFP  106 (299)
T ss_pred             CCCCceeCCccccCcceeehhhhh-HHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence            4568888754  467888899999 999999998754        2469999987754

>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ]

Probab=80.39  E-value=0.53  Score=45.18  Aligned_cols=54  Identities=20%  Similarity=0.538  Sum_probs=0.0

Q ss_pred             CCccccccccCC-------------------CccEEecCCCcccCHHHHHHHHhc---------CCCCccccccccc---
Q 023674          219 SGKECVICLSEP-------------------RDTTVLPCRHMCMCSECAKVLQFQ---------TNRCPICRQPVER---  267 (279)
Q Consensus       219 ~~~~C~IC~~~~-------------------~~~~~lPCgH~~~C~~C~~~l~~~---------~~~CPiCR~~i~~---  267 (279)
                      ...+|.+|+..-                   -+-+|-||||+ .=...++-|...         ...||+|-..+..   
T Consensus       327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv-~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g  405 (416)
T PF04710_consen  327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHV-CSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQG  405 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCCCccccCCceeEeeccccceeecCCCCceeecccccc-cchhhhhhhhcCCCCCCcccccccCCcccCcccCCCC
Confidence            478999999622                   23467899998 344455556542         2469999998875   


Q ss_pred             eEEEec
Q 023674          268 LLEIKV  273 (279)
Q Consensus       268 ~~~i~~  273 (279)
                      ++++.+
T Consensus       406 ~vrLiF  411 (416)
T PF04710_consen  406 YVRLIF  411 (416)
T ss_dssp             ------
T ss_pred             ceEEEE
Confidence            444443

; PDB: 3EGB_B 3EGA_A.

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=80.07  E-value=0.76  Score=47.67  Aligned_cols=52  Identities=21%  Similarity=0.289  Sum_probs=34.7

Q ss_pred             CCCccccccccCCCc-cEEec---CCCcccCHHHHHHHHhc------CCCCccccccccceEE
Q 023674          218 DSGKECVICLSEPRD-TTVLP---CRHMCMCSECAKVLQFQ------TNRCPICRQPVERLLE  270 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~-~~~lP---CgH~~~C~~C~~~l~~~------~~~CPiCR~~i~~~~~  270 (279)
                      +...+|.||++...| .-++|   |+|. +|..|+..|+.+      ...|++|..-|...-+
T Consensus        97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~-~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR  158 (1134)
T KOG0825|consen   97 DTSPVCEKEHSPDVDSSNICPVQTHVEN-QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR  158 (1134)
T ss_pred             cccchhheecCCcccccCcCchhhhhhh-hhhHHHHHHHHHhhccccccccccHHHHhhhhhh
Confidence            344566666666332 22334   9999 999999998765      2458898877665433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
2ea5_A	68	Solution Structure Of The Ring Domain Of The Human		2e-05

>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell Growth Regulator With Ring Finger Domain 1 Protein Length = 68

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 209 GSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268
           GS+      ++ K+CV+C +   +  +LPCRH C+C  C K  Q    +CP+CRQ V+  
Sbjct: 4   GSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQES 59
Query: 269 LEIK 272
             + 
Sbjct: 60  FALS 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
2ea5_A	68	Cell growth regulator with ring finger domain prot	3e-22
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	2e-21
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	4e-21
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	8e-18
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	3e-17
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	2e-13
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-09
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-09
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-08
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-08
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	2e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-07
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	4e-07
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	5e-07
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	6e-07
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	6e-07
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	6e-06
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	7e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	8e-06
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	1e-05
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	1e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	4e-05
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	4e-05
2ect_A	78	Ring finger protein 126; metal binding protein, st	6e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	7e-05
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	1e-04
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	2e-04
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	3e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	4e-04
4af8_A	367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	6e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	9e-04

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 86.8 bits (215), Expect = 3e-22
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 209 GSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268
           GS+      ++ K+CV+C +   +  +LPCRH C+C  C K  Q    +CP+CRQ V+  
Sbjct: 4   GSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQES 59

Query: 269 LEIKV 273
             +  
Sbjct: 60  FALSG 64

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 84.5 bits (209), Expect = 2e-21
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 215 DETDSGKECVICLSEPRDTTVL--PCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271
           D  +  K C +C   PRD  ++     H+  C  CA+ L+     CPIC++ ++ ++++
Sbjct: 2   DCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKV 60

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 83.3 bits (206), Expect = 4e-21
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 213 AGDETDSGKECVICLSEPRDTTVLPCR--HMCMCSECAKVLQFQTNRCPICRQPVERLLE 270
           +    ++ + CVIC   P++  ++  +  H+  C  CAK L+ +   CP+CRQP++ ++ 
Sbjct: 1   SSLPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVL 60

Query: 271 I 271
            
Sbjct: 61  T 61

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 74.8 bits (184), Expect = 8e-18
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 215 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271
                 K C IC+        +PC H+  C +CA+ +     +CP+C   +    +I
Sbjct: 20  RRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKI 72

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 73.6 bits (181), Expect = 3e-17
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 215 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271
            +      C++C  E  ++T  PC H   C  CA  LQ     CP+CR  VE +  +
Sbjct: 13  RKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHV 65

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 68.5 bits (165), Expect = 2e-13
 Identities = 31/270 (11%), Positives = 67/270 (24%), Gaps = 5/270 (1%)

Query: 2   GNSGSHRRHHSNIPPPTPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGYYPPPVPVH 61
           G                   +T          +++                       V 
Sbjct: 78  GQEFVDEIQGRYPHLLEQLLSTPPIIHYGPGESSSEDAVMMNTPVVKSALEMGFNRDLVK 137

Query: 62  GAYGYHHMPSGHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLV 121
                  + +G                E +K    +     +  +  +    +N      
Sbjct: 138 QTVQSKILTTGENYKTVNDIVSALLNAEDEKREEEKEKQAEEMASDDLSLIRKNRMALFQ 197

Query: 122 AFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLS 181
             T       ++  A    +     +I  K ++           L +           L 
Sbjct: 198 QLTCVLPILDNLLKANVINKQE-HDIIKQKTQIPLQARELIDTILVKGNAAANIFKNSLK 256

Query: 182 MFDEIALTKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHM 241
             D        +  N      +++ G+            + C +C+ +      +PC H+
Sbjct: 257 EIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHL 316

Query: 242 CMCSECAKVLQFQTNRCPICRQPVERLLEI 271
            +C ECA  L+    +CPICR  ++  +  
Sbjct: 317 VVCQECAPSLR----KCPICRGIIKGTVRT 342

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 52.4 bits (126), Expect = 1e-09
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 209 GSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSEC-AKVLQFQTNRCPICRQPVER 267
           GS+    +    +EC IC+ + R   +LPC H   C +C  K    +   CPICR  +  
Sbjct: 4   GSSGRVKQLTDEEECCICM-DGRADLILPCAHS-FCQKCIDKWSD-RHRNCPICRLQMTG 60

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 215 DETDSGKECVICLSEPRDTTVLPCRHMCMCSEC-AKVLQFQTNRCPICRQPVERLLEIKV 273
           +   + + C IC    +D  + PC H+ MC+ C     + +   CP CR  ++    I V
Sbjct: 327 EMGSTFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385

Query: 274 NN 275
           + 
Sbjct: 386 DP 387

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 209 GSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268
           GS+   +E +    C IC    ++  V  CRH   C  CA      T RC IC QP   +
Sbjct: 4   GSSGGSEEEEIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGI 62

Query: 269 LE 270
             
Sbjct: 63  FN 64

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 209 GSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV-ER 267
           GS+     + +  EC ICL        LPC+H+  C  C K   +   RC +CRQ + E 
Sbjct: 4   GSSGNTAPSLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPED 62

Query: 268 LLE 270
            L+
Sbjct: 63  FLD 65

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 218 DSGKECVICLSEPRD-TTVLPCRHMCMCSEC-AKVLQFQTNRCPICRQPVERLL 269
              + C ICL +P + +  LPC H   C  C  + ++ Q   CP+C+ PVE ++
Sbjct: 3   TVAERCPICLEDPSNYSMALPCLH-AFCYVCITRWIR-QNPTCPLCKVPVESVV 54

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 215 DETDSGKECVICLSEPRDTTVLP-CRHMCMCSEC-AKVLQFQTNRCPICRQPV 265
           +       C IC+ + RD  + P C  +C C  C  + L  Q  +CP CR P+
Sbjct: 17  ESIAEVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPL 68

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 45.0 bits (107), Expect = 4e-07
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 265
            C  C +E +   +LPC H  +CS C   L+    +CPIC+ P 
Sbjct: 8   RCQQCQAEAKCPKLLPCLH-TLCSGC---LEASGMQCPICQAPW 47

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 209 GSTVAGDETDSGKECVICLSE-------PRDTTVLPCRHMCMCSECAKVLQFQTNRCPIC 261
           GS+  G        C IC+          R      C H+  CS+C +      N CP C
Sbjct: 4   GSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTC 62

Query: 262 RQPV 265
           R+ +
Sbjct: 63  RKKI 66

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 45.1 bits (107), Expect = 6e-07
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 207 GIGSTVAGDETDSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQ-FQTNR-CPIC 261
             GS+    E +  + C +CL + +      + PC+H     +C  +++  +  + CP+C
Sbjct: 2   SSGSSGKVKELNLHELCAVCLEDFKPRDELGICPCKHA-FHRKC--LIKWLEVRKVCPLC 58

Query: 262 RQPVERLLE 270
             PV +L +
Sbjct: 59  NMPVLQLAQ 67

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 44.6 bits (106), Expect = 6e-07
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 218 DSGKECVICLSE----PRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 265
                C ICL +         VLPC H  +   C + +  +  RCP+C  P 
Sbjct: 3   SGSSGCPICLEDIHTSRVVAHVLPCGH-LLHRTCYEEMLKEGYRCPLCSGPS 53

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 222 ECVICLSEPRDTTVLPCRHMCMCSEC-AKVLQFQTNRCPICRQPVERLLEIKVN 274
           +C+ C           C+H  +C +C  +  + Q   CP CR  + R   ++VN
Sbjct: 54  QCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVN 106

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 209 GSTVAGDETDSGKECVICLSEPRDTT----VLPCRHMCMCSECAKVL---QFQTNRCPIC 261
           GS+   D      EC IC+    +      +L C H  +C +C + L        RCP C
Sbjct: 4   GSSGNLDALREVLECPICMESFTEEQLRPKLLHCGH-TICRQCLEKLLASSINGVRCPFC 62

Query: 262 RQPVE 266
            +   
Sbjct: 63  SKITR 67

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 42.1 bits (99), Expect = 7e-06
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 8/62 (12%)

Query: 213 AGDETDSGKECVICLSE-------PRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 265
            G        C IC+          R      C H+  CS+C +      N CP CR+ +
Sbjct: 3   TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKI 61

Query: 266 ER 267
             
Sbjct: 62  NH 63

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 41.7 bits (98), Expect = 8e-06
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 222 ECVICLSEPRDTTVLPCRHMCMCSEC-AKVLQFQTNRCPICRQPV 265
           +C  C           C H   C  C A +L   + +C  C++ +
Sbjct: 17  KCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESI 60

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 222 ECVICLSEPRDTTVLPCRHMCMCSEC-AKVLQFQTNRCPICRQPVE-RLLEIKVNN 275
           +C+IC     +   L C H   CS C  + ++ +   CPICR+ ++ +   + ++N
Sbjct: 66  QCIICSEYFIEAVTLNCAHS-FCSYCINEWMK-RKIECPICRKDIKSKTYSLVLDN 119

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 12/60 (20%)

Query: 214 GDETDSGKECVICLSEPRD---TTVLPCRHM--CMCSECAKVLQ-FQTNR-CPICRQPVE 266
           G E D+ ++C ICLS   +      LPC H+   +C     V Q   TN+ CPICR  +E
Sbjct: 8   GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVC-----VDQWLITNKKCPICRVDIE 62

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 222 ECVICLSEPRDTTVLPCRHMCMCSEC-AKVLQFQTNRCPICRQPV 265
           +C IC+    +   LPC H  +C  C    ++  +  CP CR+ V
Sbjct: 17  QCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRV 60

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 222 ECVICLSEPRDTTVLPCRHMCMCSEC-AKVLQFQTNRCPICRQPV 265
            C IC     D     C+H+  C  C  + L+   + CP CR P 
Sbjct: 25  SCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPC 68

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 12/76 (15%), Positives = 18/76 (23%), Gaps = 1/76 (1%)

Query: 12  SNIPPPTPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGYYPPPVPVHGAYGYHHMPS 71
           +   PP  P     +  Q         PS    Q+           +        + M  
Sbjct: 27  AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQID-QATTSMNDMHL 85

Query: 72  GHYPAHPPPPPPPPQY 87
            + P   P     PQ 
Sbjct: 86  HNVPLVDPNAYMQPQV 101

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.7 bits (102), Expect = 5e-05
 Identities = 12/98 (12%), Positives = 19/98 (19%)

Query: 2   GNSGSHRRHHSNIPPPTPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGYYPPPVPVH 61
             +G         P    P   +Q               Q       ++    P   P  
Sbjct: 36  AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNA 95

Query: 62  GAYGYHHMPSGHYPAHPPPPPPPPQYMEHQKAVTIRND 99
                  +  G        P   P Y +   A+     
Sbjct: 96  YMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMR 133

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 11/88 (12%), Positives = 14/88 (15%), Gaps = 3/88 (3%)

Query: 4  SGSHRRHHSNIPPPTPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGYYPPPVPVHGA 63
          S   +R +   P          T  Q       P         Y          VP  G 
Sbjct: 2  SHHKKRVY---PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQ 58

Query: 64 YGYHHMPSGHYPAHPPPPPPPPQYMEHQ 91
            +                     M   
Sbjct: 59 QQFLTPAQEQLHQQIDQATTSMNDMHLH 86

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 8/74 (10%), Positives = 10/74 (13%)

Query: 15 PPPTPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGYYPPPVPVHGAYGYHHMPSGHY 74
            P   P           A  +      P Q      G      P           +   
Sbjct: 20 ATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTS 79

Query: 75 PAHPPPPPPPPQYM 88
                   P    
Sbjct: 80 MNDMHLHNVPLVDP 93

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 7/75 (9%), Positives = 10/75 (13%)

Query: 12 SNIPPPTPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGYYPPPVPVHGAYGYHHMPS 71
           N  P   P      Q       +       P    P               +      +
Sbjct: 18 QNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQAT 77

Query: 72 GHYPAHPPPPPPPPQ 86
                     P   
Sbjct: 78 TSMNDMHLHNVPLVD 92

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 215 DETDSGKECVICLSEPRDTT----VLPCRHMCMCSEC-AKVLQFQTNRCPICRQP 264
           D  +   EC +C+              C +  +C  C  ++   +   CP CR+P
Sbjct: 6   DAKEDPVECPLCMEPLEIDDINFFPCTCGY-QICRFCWHRIRTDENGLCPACRKP 59

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 39.8 bits (93), Expect = 4e-05
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 222 ECVICLSE-------PRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267
            C IC+          R      C H+  CS+C +      N CP CR+ +  
Sbjct: 5   SCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 56

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 207 GIGSTVAGDETDSGKECVICLSEPRD---TTVLPCRHMCMCSECAKV-LQFQTNRCPICR 262
             GS+   +   SG EC +C  +         LPC H+     C    L+ Q + CP+CR
Sbjct: 2   SSGSSGTEEHVGSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLE-QHDSCPVCR 59

Query: 263 QPVE 266
           + + 
Sbjct: 60  KSLT 63

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 222 ECVICLSEPRDTTVLPCRHMCMCSEC-AKVLQFQTNRCPICRQPV 265
           EC ICL   R+    PC H   C  C  K ++   ++CP+  + +
Sbjct: 20  ECPICLMALREAVQTPCGH-RFCKACIIKSIRDAGHKCPVDNEIL 63

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 12/61 (19%)

Query: 213 AGDETDSGKECVICLSE--PRDT-TVLPCRHM--CMCSECAKVLQ-FQTNR-CPICRQPV 265
             +       CV+C+ +   R    VLPC H     C     V +  + NR CPICR   
Sbjct: 16  PNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKC-----VDKWLKANRTCPICRADS 70

Query: 266 E 266
            
Sbjct: 71  G 71

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 211 TVAGDETDSGKECVICLSEPRD---TTVLPCRHMCMCSECAKV-LQFQTNRCPICRQPV 265
           T           C IC SE       T LPC H      C  + LQ ++  CP+CR   
Sbjct: 31  TEDHGAVGQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQ-KSGTCPVCRCMF 87

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 222 ECVICLSEPRD-TTVLPCRHMCMCSEC-AKVLQFQTNRCPICRQPVER 267
            C IC     D TT+  C H   C  C  +   +  NRCP C   V +
Sbjct: 17  LCSICKGYLIDATTITECLH-TFCKSCIVRHFYYS-NRCPKCNIVVHQ 62

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 215 DETDSGKECVICLSEPRDTTVLPCRHMCMCSEC-AKVLQFQTNRCPICRQPVER 267
              +S  EC ICL   R+    PC H   C  C  K ++   ++CP+  + +  
Sbjct: 13  PPLESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 222 ECVICLSEPRDTTVLPCRHMCMCSEC-AKVLQFQTNRCPICRQPVERLLEIKVN 274
            CV C           C H  +C +C  +  + Q   CP CR  + +   +  N
Sbjct: 80  MCVCCQELVYQPVTTECFH-NVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPN 132

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Length = 367

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 28/164 (17%), Positives = 42/164 (25%), Gaps = 16/164 (9%)

Query: 1   MGNSGSHRRHHSNIPPP-------TPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGY 53
           MG+S  H  H S + P                  + YV        S  P     L    
Sbjct: 1   MGSSHHHHHHSSGLVPGGSHMCSLITQLCDAGQLADYVGLGWLNAVSSQPYLVQALGLQP 60

Query: 54  YPPPVPVHGAYGYHHMPSGHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLR-VEPD 112
            P  V V  A+       GH P    P P         +A+ I  +       L     D
Sbjct: 61  PPRRVDVDAAFRDAKGLHGHQPWVATPLPGQ-----TVRALFIGINYYGTSAALSGCCND 115

Query: 113 EENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLK 156
            +     L              +          T   T++ +++
Sbjct: 116 VKQMLATLQKRGLP---INEAVILVDEDNFPGRTDQPTRDNIVR 156

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 223 CVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQTNRCPICRQPVER 267
           C IC        ++P C H   CS C +       +CP C   V  
Sbjct: 25  CGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.56
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.54
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.5
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.4
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.32
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.3
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.27
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.26
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.23
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.22
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.22
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.22
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.2
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.2
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.16
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.16
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.16
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.15
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.15
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.13
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.13
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.12
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.11
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.11
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.11
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.1
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.1
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.07
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.06
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.04
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.02
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.02
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.0
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.99
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.96
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.96
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.95
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.94
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.93
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.93
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.92
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.89
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.89
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.88
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.87
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.87
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.86
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.86
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.83
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.81
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.79
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.78
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.76
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.75
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.75
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.72
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.67
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.67
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.59
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.56
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.56
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.53
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.36
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.32
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.14
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.11
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.0
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.98
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.97
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.9
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.66
3bux_B	329	E3 ubiquitin-protein ligase CBL; TKB, signal trans	96.66
3op0_A	323	Signal transduction protein CBL-C; structural geno	96.65
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	95.66
3nw0_A	238	Non-structural maintenance of chromosomes element	94.44
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.07
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	92.86
2d8v_A	67	Zinc finger FYVE domain-containing protein 19; zfy	81.5

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.56  E-value=2e-15  Score=107.30  Aligned_cols=56  Identities=27%  Similarity=0.730  Sum_probs=51.6

Q ss_pred             CCCccccccccCCCccEEe--cCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674          218 DSGKECVICLSEPRDTTVL--PCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV  273 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~l--PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~  273 (279)
                      +...+|.||+++.++++++  ||||+++|.+|+..|+.+..+||+||+.|..+++|++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   62 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI   62 (63)
T ss_dssp             GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred             CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence            4567899999999999888  9999999999999998888899999999999999986

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.54  E-value=3.8e-15  Score=106.16  Aligned_cols=56  Identities=30%  Similarity=0.768  Sum_probs=51.8

Q ss_pred             CCCccccccccCCCccEEe--cCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674          218 DSGKECVICLSEPRDTTVL--PCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV  273 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~l--PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~  273 (279)
                      +++.+|+||+++.++++++  ||||+++|.+|+..|+.+...||+||+.|..+++|++
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   63 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF   63 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence            3457899999999999988  9999999999999999888899999999999999986

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=8.7e-15  Score=105.63  Aligned_cols=56  Identities=34%  Similarity=0.927  Sum_probs=50.2

Q ss_pred             CCCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEecCCC
Q 023674          217 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNA  276 (279)
Q Consensus       217 ~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~~~~  276 (279)
                      +++..+|+||+++.++++++||||++||..|+..+    ..||+||+.|...++|+..++
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~~~~s   67 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQESFALSGPSS   67 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCCEECCCSSCC
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhceEEeecCCC
Confidence            36678999999999999999999999999999954    699999999999999987653

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.40  E-value=2.2e-13  Score=128.39  Aligned_cols=149  Identities=22%  Similarity=0.458  Sum_probs=93.2

Q ss_pred             eEEeCCCCCCeeEEEEEecCCCCccEEEEEeeeecCcceeeeccccccCCceeeeccccCce-ecCCCCCCCC--CChhh
Q 023674          108 RVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQK-FRQPCGTGID--LSMFD  184 (279)
Q Consensus       108 rl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a~E~~~~~l~~~~~~~~~~~~~~~~~gl~Q~-F~~~sg~~id--~~~~~  184 (279)
                      +|....+.+|.|.  |+++++..|.+.+.|........+++....+.++.    +..+..+. |..++|...+  ++...
T Consensus       234 ~Lk~~~~~~GsYI--fRls~trlGq~~LG~v~~~q~ivqti~~~ksl~~~----l~d~~~~g~yl~p~g~~~~p~l~~l~  307 (389)
T 2y1n_A          234 RLQKFIHKPGSYI--FRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQA----LIDGFREGFYLFPDGRNQNPDLTGLC  307 (389)
T ss_dssp             HHGGGTTSTTEEE--EEECSSSTTSEEEEEECTTSCEEEECCCSSCHHHH----HHHHHHTTSSCEETTCSCCCCCTTTT
T ss_pred             HHHHhhccCCceE--eccCcchHhHHHHHHHHHHHHHHHHHHhHHHHHHH----HhhhcccCccccCCCCcCCccccccc
Confidence            3333445689999  89999999999999998877666666655554442    11122221 2333333222  22111


Q ss_pred             hHhhhhhheeeccchhhhhhhhcCCCCCCCCCCCCCccccccccCCCccEEecCCCcccCHHHHHHHHh-cCCCCccccc
Q 023674          185 EIALTKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPICRQ  263 (279)
Q Consensus       185 ~~e~lkq~i~~~~~~y~l~e~~~~~~s~~~~~~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~  263 (279)
                      +.. ..+.+.+....++....          ..+...+|.||++...++++++|||. ||..|+..|.. ....||+||+
T Consensus       308 ~~~-~~~~i~ls~e~~~~~~e----------~~~~~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~  375 (389)
T 2y1n_A          308 EPT-PQDHIKVTQEQYELYCE----------MGSTFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRC  375 (389)
T ss_dssp             C--------CCCHHHHHHHHH----------TTTSSSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCC
T ss_pred             ccc-ccccccccHHHHHHHHh----------hcCCCCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCC
Confidence            111 01122222222221111          11234689999999999999999999 99999999987 5788999999


Q ss_pred             cccceEEEecC
Q 023674          264 PVERLLEIKVN  274 (279)
Q Consensus       264 ~i~~~~~i~~~  274 (279)
                      .|.....|.++
T Consensus       376 ~i~~~~~i~v~  386 (389)
T 2y1n_A          376 EIKGTEPIVVD  386 (389)
T ss_dssp             BCCEEEECSCC
T ss_pred             ccCCceeEecC
Confidence            99988777665

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.32  E-value=3.3e-13  Score=98.61  Aligned_cols=51  Identities=27%  Similarity=0.773  Sum_probs=47.2

Q ss_pred             CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674          219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV  273 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~  273 (279)
                      ++.+|.||++..++++++||||.+||..|+..|    ..||+||+.|...++|++
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~   73 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKILM   73 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECBC
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEee
Confidence            356899999999999999999999999999988    699999999999999876

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.30  E-value=4.2e-13  Score=99.48  Aligned_cols=54  Identities=33%  Similarity=0.795  Sum_probs=48.8

Q ss_pred             CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEecCCC
Q 023674          219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNA  276 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~~~~  276 (279)
                      ++.+|.||++..++++++||||.+||..|+..|+    .||+||+.|...+++++..+
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~p~~   70 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYLPTH   70 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEECBCTTC
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCeEEEEeCcc
Confidence            3468999999999999999999999999999873    99999999999999987653

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2.5e-12  Score=92.72  Aligned_cols=49  Identities=35%  Similarity=0.799  Sum_probs=45.2

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      .++.+|.||++...+.++++|||. ||..|+..|......||+||..|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence            567789999999999999999999 9999999998888899999998864

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=4.8e-12  Score=93.52  Aligned_cols=52  Identities=33%  Similarity=0.664  Sum_probs=46.6

Q ss_pred             CCCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceE
Q 023674          217 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLL  269 (279)
Q Consensus       217 ~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~  269 (279)
                      .++..+|.||++...+.++++|||. ||..|+..|......||+||..+...+
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   63 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF   63 (81)
T ss_dssp             CCCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred             CCCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence            3567799999999999999999999 999999999988889999999987544

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=8.8e-12  Score=90.09  Aligned_cols=50  Identities=30%  Similarity=0.611  Sum_probs=45.2

Q ss_pred             CCCccccccccCCCccEEe-cCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674          218 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVERL  268 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~  268 (279)
                      ++...|.||++...+.+++ +|||. ||..|+..|......||+||+.|...
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           13 TPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             CGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             CCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence            5678999999999998887 99999 99999999998888999999988753

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.22  E-value=8.6e-12  Score=89.18  Aligned_cols=52  Identities=37%  Similarity=0.811  Sum_probs=44.4

Q ss_pred             CCCCccccccccCC---CccEEecCCCcccCHHHHHHHHhcCCCCccccccccceE
Q 023674          217 TDSGKECVICLSEP---RDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLL  269 (279)
Q Consensus       217 ~~~~~~C~IC~~~~---~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~  269 (279)
                      +++..+|.||++..   ..+++++|||. ||..|+..|.....+||+||..|...+
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            35667899998876   45688999999 999999999988889999999987644

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.22  E-value=5.3e-12  Score=89.94  Aligned_cols=55  Identities=33%  Similarity=0.805  Sum_probs=47.8

Q ss_pred             CCCccccccccCCCc-cEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674          218 DSGKECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV  273 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~-~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~  273 (279)
                      +++.+|.||++...+ +++++|||. ||..|+..|..+..+||+||+.+...++...
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   58 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTIE   58 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCCC
T ss_pred             CCCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhccc
Confidence            345789999999998 588999999 9999999999888999999999987765543

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=3e-12  Score=91.86  Aligned_cols=54  Identities=31%  Similarity=0.736  Sum_probs=47.7

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV  273 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~  273 (279)
                      .+..+|.||++...+ ++++|||. ||..|+..|......||+||+.|.....+++
T Consensus        13 ~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   66 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESSG   66 (70)
T ss_dssp             CCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred             CCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence            556799999999999 88999999 9999999998888899999999987665544

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=8.1e-12  Score=88.82  Aligned_cols=49  Identities=27%  Similarity=0.716  Sum_probs=43.8

Q ss_pred             CCCccccccccCCCcc-------EEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~-------~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      .+..+|.||++...+.       ++++|||. ||..|+..|......||+||..|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence            5677899999988776       88999999 9999999999888899999998763

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.4e-12  Score=95.42  Aligned_cols=50  Identities=28%  Similarity=0.779  Sum_probs=45.3

Q ss_pred             CccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674          220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV  273 (279)
Q Consensus       220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~  273 (279)
                      ..+|.||++..++++++||||.+||..|+..+    ..||+||+.|...++|++
T Consensus        25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~   74 (75)
T 2ecg_A           25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIFM   74 (75)
T ss_dssp             HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCCBCCC
T ss_pred             CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcEEEec
Confidence            46899999999999999999999999999754    689999999999888875

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.16  E-value=1.6e-11  Score=89.80  Aligned_cols=50  Identities=30%  Similarity=0.694  Sum_probs=43.2

Q ss_pred             CCCccccccccCCCc---cEEecCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674          218 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL  268 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~  268 (279)
                      .+..+|.||++...+   +++++|+|. ||..|+..|.....+||+||+.|...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ   65 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence            667899999887653   467899999 99999999998888999999998764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.16  E-value=1.4e-11  Score=93.33  Aligned_cols=49  Identities=31%  Similarity=0.653  Sum_probs=43.4

Q ss_pred             CCCccccccccCCCc---cEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      +++..|.||++...+   ++.++|||. ||..|+..|......||+||..|..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence            456789999988776   788999999 9999999999888999999998764

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.16  E-value=1.2e-11  Score=86.65  Aligned_cols=48  Identities=27%  Similarity=0.716  Sum_probs=42.9

Q ss_pred             CCccccccccCCCcc-------EEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          219 SGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~-------~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      ++.+|.||++...+.       ++++|||. ||.+|+..|..+..+||+||+.+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCc
Confidence            356899999988765       88999999 9999999999888899999999874

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.15  E-value=1.6e-11  Score=83.68  Aligned_cols=48  Identities=31%  Similarity=0.794  Sum_probs=42.4

Q ss_pred             CCccccccccCCCc----cEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          219 SGKECVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       219 ~~~~C~IC~~~~~~----~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      ++.+|.||++...+    +++++|||. ||..|+..|.....+||+||+.|.+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g   55 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG   55 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            45789999998865    788999999 9999999999888999999998753

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=3.4e-11  Score=86.81  Aligned_cols=49  Identities=24%  Similarity=0.666  Sum_probs=43.3

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHh---cCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF---QTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~---~~~~CPiCR~~i~~  267 (279)
                      ++..+|.||++...+.++++|||. ||..|+..|..   ....||+||+.|..
T Consensus        18 ~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             ccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            567799999999999999999999 99999999986   34589999998753

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=1.8e-11  Score=88.61  Aligned_cols=54  Identities=24%  Similarity=0.637  Sum_probs=46.0

Q ss_pred             CCCccccccccCCCc---cEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEe
Q 023674          218 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK  272 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~  272 (279)
                      +++.+|.||++...+   +++++|+|. ||..|+..|.....+||+||..|..+..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   69 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQLS   69 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence            556789999998754   566799999 999999999988889999999998776554

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.13  E-value=3.9e-11  Score=87.26  Aligned_cols=48  Identities=29%  Similarity=0.731  Sum_probs=43.0

Q ss_pred             CCCccccccccCCCccEEec-CCCcccCHHHHHHHHhcC--CCCcccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQT--NRCPICRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lP-CgH~~~C~~C~~~l~~~~--~~CPiCR~~i~  266 (279)
                      .++..|.||++...+.++++ |||. ||..|+..|....  ..||+||+.+.
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           13 PDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            56789999999999999999 9999 9999999998765  68999999754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.12  E-value=2.4e-11  Score=82.89  Aligned_cols=48  Identities=40%  Similarity=0.877  Sum_probs=42.0

Q ss_pred             CCCccccccccCCCc---cEEec-CCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674          218 DSGKECVICLSEPRD---TTVLP-CRHMCMCSECAKVLQFQTNRCPICRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~---~~~lP-CgH~~~C~~C~~~l~~~~~~CPiCR~~i~  266 (279)
                      +++.+|.||++...+   ++.++ |||. ||..|+..|.....+||+||+.|.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence            345789999999877   77887 9999 999999999988899999998763

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.11  E-value=2.4e-11  Score=98.87  Aligned_cols=49  Identities=29%  Similarity=0.676  Sum_probs=44.9

Q ss_pred             CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674          219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL  268 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~  268 (279)
                      ++..|.||++...+.++++|||. ||..|+..|+....+||+||..|...
T Consensus        52 ~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           52 NELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HHSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             ccCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            34679999999999999999998 99999999998889999999998764

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.11  E-value=2.2e-11  Score=87.26  Aligned_cols=49  Identities=27%  Similarity=0.716  Sum_probs=43.8

Q ss_pred             CCCccccccccCCCcc-------EEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~-------~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      +++.+|.||++...+.       ++++|||. ||..|+..|..+..+||+||+.+..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence            4567899999988776       89999999 9999999999888999999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=2.9e-11  Score=87.95  Aligned_cols=49  Identities=29%  Similarity=0.702  Sum_probs=42.5

Q ss_pred             CCCccccccccCCCcc---EEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDT---TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~---~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      +++.+|.||++...+.   ++++|+|. ||..|+..|.....+||+||+.|..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            4567899999887654   78999999 9999999999888999999998754

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=6.8e-11  Score=88.07  Aligned_cols=49  Identities=29%  Similarity=0.707  Sum_probs=43.4

Q ss_pred             CCCccccccccCCCc----cEEecCCCcccCHHHHHHHHhcC---CCCccccccccc
Q 023674          218 DSGKECVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQT---NRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~----~~~lPCgH~~~C~~C~~~l~~~~---~~CPiCR~~i~~  267 (279)
                      .+..+|.||++...+    .++++|||. ||..|+..|....   ..||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             cCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            567899999999998    899999999 9999999998765   789999997753

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=5.6e-11  Score=84.28  Aligned_cols=49  Identities=18%  Similarity=0.537  Sum_probs=43.3

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHh-cCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~~i~~  267 (279)
                      .+...|.||++..++.++++|||. ||..|+..|.. ...+||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            567889999999999988999999 99999999984 45689999998764

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.07  E-value=1.4e-10  Score=85.44  Aligned_cols=49  Identities=27%  Similarity=0.674  Sum_probs=44.1

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc------CCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ------TNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~------~~~CPiCR~~i~~  267 (279)
                      .+..+|.||++...+.++++|||. ||..|+..|...      ...||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             ccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            556799999999999999999999 999999998876      5689999998864

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.06  E-value=3.3e-11  Score=88.10  Aligned_cols=49  Identities=27%  Similarity=0.645  Sum_probs=43.4

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc-------CCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-------TNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~-------~~~CPiCR~~i~~  267 (279)
                      ++..+|.||++...+.++++|||. ||..|+..|...       ...||+||..+..
T Consensus        10 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           10 QEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             ccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            567899999999999999999999 999999998765       5689999998864

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.04  E-value=1.8e-10  Score=86.83  Aligned_cols=47  Identities=30%  Similarity=0.759  Sum_probs=42.4

Q ss_pred             CCCccccccccCCCccEEec-CCCcccCHHHHHHHHhcC--CCCccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQT--NRCPICRQPV  265 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lP-CgH~~~C~~C~~~l~~~~--~~CPiCR~~i  265 (279)
                      .+...|.||++.+.+.++++ |||. ||..|+..|+...  ..||+||..+
T Consensus        11 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A           11 PDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             CcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            56789999999999999999 9999 9999999987643  5899999987

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=3.5e-10  Score=79.28  Aligned_cols=43  Identities=26%  Similarity=0.685  Sum_probs=38.8

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHh---cCCCCccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF---QTNRCPIC  261 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~---~~~~CPiC  261 (279)
                      +++.+|.||++...+.++++|||. ||..|+..|..   ...+||+|
T Consensus        18 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence            567899999999999999999999 99999999987   34589998

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.7e-10  Score=85.00  Aligned_cols=49  Identities=27%  Similarity=0.658  Sum_probs=44.0

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc------CCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ------TNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~------~~~CPiCR~~i~~  267 (279)
                      .+..+|.||++...+.++++|||. ||..|+..|...      ...||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           17 KEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             cCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            566799999999999999999999 999999998776      6789999998874

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=2.8e-10  Score=78.18  Aligned_cols=43  Identities=23%  Similarity=0.731  Sum_probs=38.1

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHh---cCCCCccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF---QTNRCPIC  261 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~---~~~~CPiC  261 (279)
                      ++...|.||++...+.++++|||. ||..|+..|+.   ...+||+|
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence            566799999999999999999999 99999999953   45789998

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.99  E-value=3.3e-10  Score=82.71  Aligned_cols=49  Identities=12%  Similarity=0.182  Sum_probs=44.4

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~  267 (279)
                      .+...|.||++...+.++++|||. ||..|+..|... ..+||+||+.+..
T Consensus         6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            456899999999999999999999 999999999876 6789999998864

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.96  E-value=1.6e-10  Score=88.99  Aligned_cols=49  Identities=27%  Similarity=0.716  Sum_probs=43.8

Q ss_pred             CCCccccccccCCCccEE-ecCCCcccCHHHHHHHHhcC-CCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTV-LPCRHMCMCSECAKVLQFQT-NRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~-lPCgH~~~C~~C~~~l~~~~-~~CPiCR~~i~~  267 (279)
                      ++...|.||++...+.++ ++|||. ||..|+..|+... ..||+||..+..
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            345789999999999999 999999 9999999998877 689999998853

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=3.9e-10  Score=83.55  Aligned_cols=48  Identities=31%  Similarity=0.636  Sum_probs=39.3

Q ss_pred             CCccccccccCCCc--------------cEEe-cCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          219 SGKECVICLSEPRD--------------TTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       219 ~~~~C~IC~~~~~~--------------~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      ++..|.||++...+              ++++ .|+|. ||..|+..|..++.+||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence            45568888887754              4455 49999 9999999999988999999998753

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.95  E-value=1.1e-10  Score=108.94  Aligned_cols=52  Identities=29%  Similarity=0.856  Sum_probs=47.4

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV  273 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~  273 (279)
                      +++..|.||++...+++++||||.|||..|+..|    ..||+||..|...++|++
T Consensus       293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~~  344 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTFL  344 (345)
T ss_dssp             HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC-
T ss_pred             cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEeec
Confidence            4567899999999999999999999999999987    589999999999999875

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.94  E-value=4.5e-10  Score=87.31  Aligned_cols=49  Identities=29%  Similarity=0.624  Sum_probs=44.6

Q ss_pred             CCCccccccccCCCccEEe-cCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      .+...|.||++...+.+.+ +|||. ||..|+..|......||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence            3467899999999999988 99999 9999999999888899999999875

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.93  E-value=3e-10  Score=90.46  Aligned_cols=49  Identities=22%  Similarity=0.545  Sum_probs=43.3

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcC-CCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~-~~CPiCR~~i~~  267 (279)
                      .+...|.||++...+.++++|||. ||..|+..|+... ..||+||..+..
T Consensus        50 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           50 EETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             ccCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            345789999999999999999999 9999999988754 489999999875

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.93  E-value=3.2e-10  Score=86.72  Aligned_cols=48  Identities=25%  Similarity=0.567  Sum_probs=43.7

Q ss_pred             CCccccccccCCCccEEe-cCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          219 SGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      +...|.||++...+.+++ +|||. ||..|+..|......||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            457899999999999888 89999 9999999999888899999998874

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.92  E-value=5.3e-10  Score=87.49  Aligned_cols=47  Identities=19%  Similarity=0.548  Sum_probs=38.7

Q ss_pred             CccccccccCCCc------------------cEEecCCCcccCHHHHHHHHh-----cCCCCccccccccc
Q 023674          220 GKECVICLSEPRD------------------TTVLPCRHMCMCSECAKVLQF-----QTNRCPICRQPVER  267 (279)
Q Consensus       220 ~~~C~IC~~~~~~------------------~~~lPCgH~~~C~~C~~~l~~-----~~~~CPiCR~~i~~  267 (279)
                      +..|.||++.+.+                  +.+++|+|. ||..|+..|..     ....||+||..+..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            3589999998754                  237899999 99999999983     45689999998764

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.89  E-value=6.1e-10  Score=78.59  Aligned_cols=47  Identities=28%  Similarity=0.782  Sum_probs=38.4

Q ss_pred             Ccccccccc-CCCcc----EEecCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674          220 GKECVICLS-EPRDT----TVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER  267 (279)
Q Consensus       220 ~~~C~IC~~-~~~~~----~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~  267 (279)
                      +..|.||++ ...+.    ++++|||. ||..|+..|+.+ ...||+||..+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            568999999 55443    57899999 999999999654 4679999999864

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.89  E-value=8.5e-10  Score=87.73  Aligned_cols=56  Identities=25%  Similarity=0.645  Sum_probs=47.4

Q ss_pred             CCCccccccccCCCcc-------EEecCCCcccCHHHHHHHHhcCCCCccccccccc--eEEEecC
Q 023674          218 DSGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER--LLEIKVN  274 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~-------~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~--~~~i~~~  274 (279)
                      .+..+|.||++...+.       ++++|||. ||..|+..|.....+||+||+.+..  +..++++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~   69 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG   69 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence            3467899999998876       99999999 9999999999888899999999874  4445544

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.88  E-value=8.1e-10  Score=81.55  Aligned_cols=52  Identities=25%  Similarity=0.662  Sum_probs=41.7

Q ss_pred             CCCccccccccCC--CccEEec--CCCcccCHHHHHHHHhc-CCCCccccccccceEE
Q 023674          218 DSGKECVICLSEP--RDTTVLP--CRHMCMCSECAKVLQFQ-TNRCPICRQPVERLLE  270 (279)
Q Consensus       218 ~~~~~C~IC~~~~--~~~~~lP--CgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~~~~  270 (279)
                      +++..|.||++..  .+.+++|  |||. ||..|+..++.. ...||+||+.+.....
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            5567899999987  4566776  9999 999999997643 4679999999876433

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.87  E-value=3.2e-10  Score=89.07  Aligned_cols=49  Identities=31%  Similarity=0.698  Sum_probs=43.4

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~  267 (279)
                      .++..|.||++...+.++++|||. ||..|+..|... ...||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            456789999999999999999999 999999998765 5689999998864

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.87  E-value=2.5e-10  Score=78.72  Aligned_cols=45  Identities=33%  Similarity=0.766  Sum_probs=39.8

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~  266 (279)
                      .+...|.||++...+.++++|||. ||..|+..|   ...||+||+.+.
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSS---SSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCeEEcCCCCc-ccHHHHccC---CCCCCcCCcEee
Confidence            556789999999999999999999 999998773   568999999875

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.86  E-value=5.2e-10  Score=86.99  Aligned_cols=47  Identities=30%  Similarity=0.750  Sum_probs=41.9

Q ss_pred             CccccccccCCCccEEecCCCcccCHHHHHHHHhcCC---CCccccccccc
Q 023674          220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTN---RCPICRQPVER  267 (279)
Q Consensus       220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~---~CPiCR~~i~~  267 (279)
                      ...|.||++...+.++++|||. ||..|+..|.....   .||+||..+..
T Consensus        21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            4689999999999999999999 99999999987653   89999998864

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.86  E-value=7.7e-10  Score=91.45  Aligned_cols=49  Identities=22%  Similarity=0.502  Sum_probs=43.6

Q ss_pred             CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCC-CCccccccccce
Q 023674          219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTN-RCPICRQPVERL  268 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~-~CPiCR~~i~~~  268 (279)
                      +...|.||++...+.++++|||. ||..|+..|..... .||+||..+...
T Consensus        77 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            45789999999999999999999 99999999987654 799999998753

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.83  E-value=1.2e-09  Score=86.41  Aligned_cols=49  Identities=29%  Similarity=0.638  Sum_probs=44.0

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCC-CCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTN-RCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~-~CPiCR~~i~~  267 (279)
                      ++...|.||++...+.++++|||. ||..|+..|..... +||+||..+..
T Consensus        16 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            456799999999999999999999 99999999987654 89999998875

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.81  E-value=1e-09  Score=91.59  Aligned_cols=49  Identities=29%  Similarity=0.670  Sum_probs=43.1

Q ss_pred             CCCccccccccCCCccEEe-cCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQ-TNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~  267 (279)
                      .+...|.||++...+.+.+ +|||. ||..|+..|... ...||+||..+..
T Consensus        52 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           52 HSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            3457899999999998887 99999 999999999876 6789999998853

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.79  E-value=3.8e-09  Score=82.43  Aligned_cols=46  Identities=22%  Similarity=0.394  Sum_probs=38.9

Q ss_pred             CccccccccCCCc------------------cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674          220 GKECVICLSEPRD------------------TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE  266 (279)
Q Consensus       220 ~~~C~IC~~~~~~------------------~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~  266 (279)
                      +..|.||++.+.+                  +++++|+|. ||..|+..|..+..+||+||+.+.
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence            4578888887653                  466899999 999999999998899999999853

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.78  E-value=3.6e-09  Score=81.67  Aligned_cols=49  Identities=14%  Similarity=0.061  Sum_probs=45.1

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      .+...|.||++-++|.++++|||. ||..|+..|+....+||+||..+..
T Consensus        27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence            567899999999999999999999 9999999999877899999998864

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.76  E-value=2.4e-09  Score=84.15  Aligned_cols=49  Identities=27%  Similarity=0.539  Sum_probs=43.7

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~  267 (279)
                      .+...|.||++...+.+.++|||. ||..|+..|... ...||+||..+..
T Consensus        21 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           21 VKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            345789999999999999999999 999999999876 6789999998864

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.75  E-value=7.8e-09  Score=77.28  Aligned_cols=49  Identities=14%  Similarity=0.038  Sum_probs=45.1

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      .+...|.||++-++|.++++|||. ||..|+..|+....+||+||+.+..
T Consensus        12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            467899999999999999999999 9999999998888899999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.75  E-value=3.6e-09  Score=84.03  Aligned_cols=54  Identities=26%  Similarity=0.647  Sum_probs=46.0

Q ss_pred             CCCccccccccCCCcc-------EEecCCCcccCHHHHHHHHhcCCCCccccccccc--eEEEe
Q 023674          218 DSGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER--LLEIK  272 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~-------~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~--~~~i~  272 (279)
                      ++..+|.||++...+.       ++++|||. ||..|+..|.....+||+||..+..  +..++
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~  132 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY  132 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence            4567899999988775       88999999 9999999999999999999999874  44544

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.72  E-value=1.2e-08  Score=78.48  Aligned_cols=49  Identities=16%  Similarity=0.054  Sum_probs=44.9

Q ss_pred             CCCccccccccCCCccEEecCC-CcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCR-HMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCg-H~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      .++..|.||++-++|.++++|| |. ||..|+..|+....+||+||+.+..
T Consensus        20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            4578999999999999999999 99 9999999999877889999998864

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=8.9e-09  Score=76.31  Aligned_cols=51  Identities=22%  Similarity=0.495  Sum_probs=41.4

Q ss_pred             CCCccccccccCC--CccEEecCC-----CcccCHHHHHHHHhcC--CCCccccccccceE
Q 023674          218 DSGKECVICLSEP--RDTTVLPCR-----HMCMCSECAKVLQFQT--NRCPICRQPVERLL  269 (279)
Q Consensus       218 ~~~~~C~IC~~~~--~~~~~lPCg-----H~~~C~~C~~~l~~~~--~~CPiCR~~i~~~~  269 (279)
                      .++..|.||+++.  .+.+++||+     |. |+.+|+..|...+  .+||+||..+....
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            5567899999865  356789996     99 9999999998765  48999999876443

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.67  E-value=4.8e-09  Score=85.77  Aligned_cols=47  Identities=21%  Similarity=0.434  Sum_probs=42.0

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCC-CCccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTN-RCPICRQPV  265 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~-~CPiCR~~i  265 (279)
                      ++...|.||++...+.+.++|||. ||..|+..|+.... .||+||..+
T Consensus        29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence            456789999999999999999999 99999999987654 899999975

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.59  E-value=4.7e-09  Score=82.78  Aligned_cols=45  Identities=29%  Similarity=0.665  Sum_probs=40.7

Q ss_pred             CCccccccccCCCccEEe-cCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674          219 SGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVE  266 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~  266 (279)
                      +...|.||++...+.+++ +|||. ||..|+..|..  ..||+||..+.
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc--CCCcCCCCcCc
Confidence            457899999999999998 99999 99999999875  68999999874

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.56  E-value=8.6e-09  Score=81.82  Aligned_cols=46  Identities=22%  Similarity=0.394  Sum_probs=0.4

Q ss_pred             CccccccccCCCc------------------cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674          220 GKECVICLSEPRD------------------TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE  266 (279)
Q Consensus       220 ~~~C~IC~~~~~~------------------~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~  266 (279)
                      +..|.||++...+                  +++++|+|. ||..|+..|......||+||+.+.
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence            3579999988754                  233689999 999999999988899999999753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.56  E-value=3.8e-08  Score=87.56  Aligned_cols=49  Identities=12%  Similarity=0.078  Sum_probs=43.5

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcC-CCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~-~~CPiCR~~i~~  267 (279)
                      .+...|.||++-++|.++++|||. ||..|+..|+..+ ..||+||..+..
T Consensus       206 ~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          206 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            567899999999999999999999 9999999988764 449999998864

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.53  E-value=3.2e-08  Score=82.71  Aligned_cols=49  Identities=29%  Similarity=0.643  Sum_probs=43.7

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcC-CCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~-~~CPiCR~~i~~  267 (279)
                      ++...|.||++...+.+.++|||. ||..|+..|.... .+||+||..+..
T Consensus        16 ~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence            456899999999999999999999 9999999987654 489999998875

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=1.8e-07  Score=71.03  Aligned_cols=46  Identities=22%  Similarity=0.383  Sum_probs=40.1

Q ss_pred             CCCccccccccCCCccEEec-CCCcccCHHHHHHHHhcC------CCCcc--cccc
Q 023674          218 DSGKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQT------NRCPI--CRQP  264 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lP-CgH~~~C~~C~~~l~~~~------~~CPi--CR~~  264 (279)
                      .+...|.||++-+++.++++ |||. ||..|+..|+...      .+||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            35678999999999999996 9999 9999999988653      48999  9865

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.32  E-value=1.9e-07  Score=79.30  Aligned_cols=49  Identities=12%  Similarity=0.069  Sum_probs=43.6

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcC-CCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~-~~CPiCR~~i~~  267 (279)
                      .+...|.||++-++|.++++|||. ||..|+..|+... .+||+||..+..
T Consensus       104 p~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          104 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            567899999999999999999999 9999999988764 469999998864

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.14  E-value=3.4e-06  Score=61.43  Aligned_cols=51  Identities=25%  Similarity=0.354  Sum_probs=41.3

Q ss_pred             CCCCCccccccccCCCccEE-ecCCCcccCHHHHHHHHhcC--CCCccccccccc
Q 023674          216 ETDSGKECVICLSEPRDTTV-LPCRHMCMCSECAKVLQFQT--NRCPICRQPVER  267 (279)
Q Consensus       216 ~~~~~~~C~IC~~~~~~~~~-lPCgH~~~C~~C~~~l~~~~--~~CPiCR~~i~~  267 (279)
                      ..+...+|.||++....-.. .-|+|. |+..|+..|+...  .+||+||+.+..
T Consensus        11 y~~~i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           11 YPDAVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             CSSSSCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             ccCCCCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            34667799999998765433 379999 9999999998776  789999988764

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.11  E-value=1.4e-06  Score=60.78  Aligned_cols=49  Identities=18%  Similarity=0.363  Sum_probs=39.1

Q ss_pred             CCCccccccccCCCccEEecCCCc----ccCHHHHHHHHhc--CCCCcccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHM----CMCSECAKVLQFQ--TNRCPICRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~----~~C~~C~~~l~~~--~~~CPiCR~~i~  266 (279)
                      ++...|.||++...+..++||.+.    .++..|+..|...  +.+|++||..+.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            456789999988766678897652    2999999999864  568999998764

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.00  E-value=5.3e-06  Score=63.42  Aligned_cols=51  Identities=27%  Similarity=0.682  Sum_probs=40.9

Q ss_pred             cccccccCCCc-cEEecCCCcccCHHHHHHHHhc-CCCCccccccccceEEEec
Q 023674          222 ECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVERLLEIKV  273 (279)
Q Consensus       222 ~C~IC~~~~~~-~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~~~~i~~  273 (279)
                      -|.+|---... ..++||.|. ||.+|+..|.++ .+.||.||..|..+-++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~   55 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR   55 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG
T ss_pred             ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEecc
Confidence            36667665554 467899998 999999998765 5789999999999887754

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.98  E-value=2.9e-06  Score=59.37  Aligned_cols=48  Identities=19%  Similarity=0.221  Sum_probs=43.0

Q ss_pred             CccccccccCCCccEEe-cCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674          220 GKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVERL  268 (279)
Q Consensus       220 ~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~  268 (279)
                      ...|.||++-.+|.+++ +|||. |+++|+..|.....+||++++++...
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            46899999999999999 89999 99999999998777899999988653

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.97  E-value=3.9e-06  Score=74.98  Aligned_cols=48  Identities=19%  Similarity=0.320  Sum_probs=41.5

Q ss_pred             CCCccccccccCCCccEEe-cCCCcccCHHHHHHHHhcC--CCCcc--cccccc
Q 023674          218 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQT--NRCPI--CRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~~--~~CPi--CR~~i~  266 (279)
                      .....|.||++.+++.+.. .|||. ||..|+..|+...  ..||+  ||+.+.
T Consensus       179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            5667899999999999875 99999 9999999988654  46999  999765

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.90  E-value=3.7e-06  Score=63.36  Aligned_cols=45  Identities=24%  Similarity=0.590  Sum_probs=34.4

Q ss_pred             CCccccccccCCCccE--E-ecCCCcccCHHHHHHHHhc--------CCCCcc--cccc
Q 023674          219 SGKECVICLSEPRDTT--V-LPCRHMCMCSECAKVLQFQ--------TNRCPI--CRQP  264 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~--~-lPCgH~~~C~~C~~~l~~~--------~~~CPi--CR~~  264 (279)
                      +...|.||++...+..  . .+|||. ||.+|+..++..        .-+||.  ||..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4568999999876532  2 379999 999999985532        136999  9987

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.66  E-value=1.2e-05  Score=74.36  Aligned_cols=51  Identities=18%  Similarity=0.403  Sum_probs=39.1

Q ss_pred             CCCCccccccccCCCc-cE-------EecCCCcccCHHHHHHHHhcC-----------CCCccccccccce
Q 023674          217 TDSGKECVICLSEPRD-TT-------VLPCRHMCMCSECAKVLQFQT-----------NRCPICRQPVERL  268 (279)
Q Consensus       217 ~~~~~~C~IC~~~~~~-~~-------~lPCgH~~~C~~C~~~l~~~~-----------~~CPiCR~~i~~~  268 (279)
                      ++...+|.||++...+ -.       -..|+|. |+..|+..|....           +.||.||++|...
T Consensus       305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred             ccCCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence            3566799999987765 11       1369999 9999999997542           4699999988653

>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*

Probab=96.66  E-value=0.00037  Score=63.27  Aligned_cols=69  Identities=16%  Similarity=0.372  Sum_probs=54.7

Q ss_pred             eEEeCCCCCCeeEEEEEecCCCCccEEEEEeeeecCcceeeeccccccCCceeeeccccCceecCCCCCCCCCC
Q 023674          108 RVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLS  181 (279)
Q Consensus       108 rl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a~E~~~~~l~~~~~~~~~~~~~~~~~gl~Q~F~~~sg~~id~~  181 (279)
                      +|.+..+.+|.|.  |+|+|+..|+|+|.|+.+++...++|+.+++++|..--.+.+|.   |..+.|.+.+++
T Consensus       258 ~L~~~~~kpGsYI--fR~ScTrlGqwAIgyV~~~~~I~qtip~nk~l~qal~dg~~eg~---ylyp~g~~~npd  326 (329)
T 3bux_B          258 RLQKFIHKPGSYI--FRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGF---YLFPDGRNQNPD  326 (329)
T ss_dssp             HHGGGTTSTTEEE--EEECSSSTTSEEEEEECTTSCEEEECCSSCCHHHHHHHHHHHTS---SCEETTCSCCCC
T ss_pred             HHHHhcCCCCcEE--EEeccCccCceEEEEECCCCceeeeCCCCcHHHHHHHhccccce---EECCCCCCCCCC
Confidence            3444446799999  99999999999999999999999999999999887433344444   677888765544

>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}

Probab=96.65  E-value=0.0004  Score=62.78  Aligned_cols=72  Identities=14%  Similarity=0.321  Sum_probs=56.0

Q ss_pred             eEEeCCCCCCeeEEEEEecCCCCccEEEEEeeeecCcceeeeccccccCCceeeeccccCceecCCCCCCCCCChhh
Q 023674          108 RVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFD  184 (279)
Q Consensus       108 rl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a~E~~~~~l~~~~~~~~~~~~~~~~~gl~Q~F~~~sg~~id~~~~~  184 (279)
                      +|.+..+.+|.|+  |.|+|+..|+|+|.|+++++...++|+.++.++|..--...+|.   |..+.|.+.++++-+
T Consensus       243 ~L~~~~~KpGsYI--fR~ScTrlGqwAIgYV~s~g~I~qtip~nk~l~qaL~dG~~eg~---ylyp~g~~~npdl~~  314 (323)
T 3op0_A          243 RLQACRDKPGSYI--FRPSCTRLGQWAIGYVSSDGSILQTIPANKPLSQVLLEGQKDGF---YLYPDGKTHNPDLTE  314 (323)
T ss_dssp             HTTGGGGSTTEEE--EEECSSSTTCEEEEEECTTSCEEEECCCSSCHHHHHHHHHHTTS---SCEETTCSCCCCCHH
T ss_pred             HHHHhccCCCcEE--EEeccCccCceEEEEEcCCCceeecCCCCcHHHHHHHhccccce---eECCCCCcCCcCHHH
Confidence            3443446799999  99999999999999999999999999999998887332333343   788888877666544

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=94.44  E-value=0.033  Score=48.88  Aligned_cols=48  Identities=25%  Similarity=0.366  Sum_probs=37.8

Q ss_pred             CCccccccccCCCccEEec-CCCcccCHHHHHHHHhcC--CCCccccccccc
Q 023674          219 SGKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQT--NRCPICRQPVER  267 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lP-CgH~~~C~~C~~~l~~~~--~~CPiCR~~i~~  267 (279)
                      ...+|.||.+-......-+ |+|. |+..|+..|....  .+||.|+.....
T Consensus       179 ~i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             TCCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            4678999998766554443 9999 9999999997654  489999987654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.07  E-value=0.038  Score=41.38  Aligned_cols=31  Identities=26%  Similarity=0.638  Sum_probs=25.9

Q ss_pred             CccccccccC-CCccEE--ecCCCcccCHHHHHHH
Q 023674          220 GKECVICLSE-PRDTTV--LPCRHMCMCSECAKVL  251 (279)
Q Consensus       220 ~~~C~IC~~~-~~~~~~--lPCgH~~~C~~C~~~l  251 (279)
                      +..|.||.+. ..+++.  +.|+|. ||..|+..+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHHH
Confidence            4689999976 566666  899999 999999983

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=92.86  E-value=0.089  Score=38.38  Aligned_cols=34  Identities=26%  Similarity=0.605  Sum_probs=28.9

Q ss_pred             CCCccccccccCCCccEEecC----CCcccCHHHHHHHH
Q 023674          218 DSGKECVICLSEPRDTTVLPC----RHMCMCSECAKVLQ  252 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPC----gH~~~C~~C~~~l~  252 (279)
                      .....|.+|.++..|+-|+-|    .|. ||..|.+...
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~sI   50 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRESI   50 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHHH
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCe-eeccccHHHH
Confidence            556789999999999988888    588 9999998743

>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1

Probab=81.50  E-value=0.71  Score=32.27  Aligned_cols=34  Identities=18%  Similarity=0.475  Sum_probs=27.0

Q ss_pred             CCCCccccccccCCCccEEecC-CCcccCHHHHHHHH
Q 023674          217 TDSGKECVICLSEPRDTTVLPC-RHMCMCSECAKVLQ  252 (279)
Q Consensus       217 ~~~~~~C~IC~~~~~~~~~lPC-gH~~~C~~C~~~l~  252 (279)
                      +++...|+||.+. ....-+-| +-+ ||..|.+.+.
T Consensus         5 ~ee~pWC~ICneD-AtlrC~gCdgDL-YC~rC~rE~H   39 (67)
T 2d8v_A            5 SSGLPWCCICNED-ATLRCAGCDGDL-YCARCFREGH   39 (67)
T ss_dssp             CCCCSSCTTTCSC-CCEEETTTTSEE-ECSSHHHHHT
T ss_pred             CcCCCeeEEeCCC-CeEEecCCCCce-ehHHHHHHHc
Confidence            3567899999998 55666788 666 9999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-13
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-10
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	7e-10
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	7e-10
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	2e-08
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	4e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	8e-07
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	3e-05
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	6e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	8e-05
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	8e-04

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (152), Expect = 1e-13
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNN 275
            + + C IC    +D  + PC H+   S      + +   CP CR  ++    I V+ 
Sbjct: 21  STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDP 78

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 53.8 bits (129), Expect = 2e-10
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 220 GKECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLL-EIKVNNAA 277
            + C ICL +P + +  LPC H   C  C      Q   CP+C+ PVE ++  I+ ++  
Sbjct: 5   AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTIESDSEF 63

Query: 278 DD 279
            D
Sbjct: 64  GD 65

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 7e-10
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 265
            C  C +E +   +LPC H   CS C   L+    +CPIC+ P 
Sbjct: 8   RCQQCQAEAKCPKLLPCLHTL-CSGC---LEASGMQCPICQAPW 47

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 7e-10
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 4/49 (8%)

Query: 222 ECVICLSEPRDT----TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266
           EC +C+              C +        ++   +   CP CR+P  
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 47.6 bits (113), Expect = 2e-08
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 218 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 265
           D G EC +CL+E  D      LP       +EC  +     + CP+CR  V
Sbjct: 3   DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (107), Expect = 4e-07
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ--TNRCPICRQPVER 267
           EC ICL   ++     C H+       K+L  +   ++CP+C+  + +
Sbjct: 23  ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (104), Expect = 8e-07
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 223 CVICLSEPRDTTVLPCRHMCMCSEC-AKVLQFQTNRCPICRQPV 265
           C IC     D     C+H+  C  C  + L+   + CP CR P 
Sbjct: 26  CQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPC 68

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 3e-05
 Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 5/51 (9%)

Query: 222 ECVICLSEPRD-----TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267
            C  C +           V  C H    S    +       CP C  P+ +
Sbjct: 5   GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (87), Expect = 6e-05
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV--ERLLEIKVN 274
           C I    PR   + P           +     T   PI  +P+  E ++EI  +
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 56

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 8e-05
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 215 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVN 274
           D  +    C  C +  R+   L       CS C  V       CP+C  P   + ++K+N
Sbjct: 17  DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNC--VSDCIGTGCPVCYTPA-WIQDLKIN 73

Query: 275 NAADD 279
              D 
Sbjct: 74  RQLDS 78

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 8e-04
 Identities = 10/64 (15%), Positives = 13/64 (20%), Gaps = 19/64 (29%)

Query: 221 KECVICLSEPRDT------------------TVLPCRHMCMCSECAKVLQFQTNRCPICR 262
             C IC +   D                       C H      C          CP+  
Sbjct: 22  DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH-AFHFHCISRWLKTRQVCPLDN 80

Query: 263 QPVE 266
           +  E
Sbjct: 81  REWE 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.26
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.16
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.08
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.02
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.02
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.97
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.93
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.88
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.88
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.84
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.73
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.73
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.7
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.63
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.59
d3buxb3	88	Cbl {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.65
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	90.57
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	80.96

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.2e-14  Score=102.75  Aligned_cols=54  Identities=31%  Similarity=0.728  Sum_probs=47.1

Q ss_pred             CccccccccCCCccEEecCCCcccCHHHHHHHHh-cCCCCccccccccceEEEecC
Q 023674          220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVERLLEIKVN  274 (279)
Q Consensus       220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~~i~~~~~i~~~  274 (279)
                      ...|.||++...+.++++|||. ||.+|+..|.. ++++||+||..|.....|.++
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~i~   77 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD   77 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCE-ECHHHHHHHHHTTCCSCTTTCCCCCCCCCSSCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCe-eeHHHHHHHHHHCcCcCCCCCcCccCCceeecC
Confidence            4579999999999999999999 99999999986 457899999999887666553

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.26  E-value=1.2e-12  Score=92.49  Aligned_cols=51  Identities=35%  Similarity=0.875  Sum_probs=44.5

Q ss_pred             CCccccccccCCCcc-EEecCCCcccCHHHHHHHHhcCCCCccccccccceEE
Q 023674          219 SGKECVICLSEPRDT-TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLE  270 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~-~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~  270 (279)
                      ...+|.||++...+. ++++|||. ||..|+..|..++.+||+||+.|..++.
T Consensus         4 ~~d~C~IC~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~i~~~~~   55 (68)
T d1chca_           4 VAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVH   55 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred             CCCCCccCCcCccCCcEEeCCCCc-CcHHHHHHHHHhCCcCCCCCcchHhhcc
Confidence            356899999998774 55899999 9999999999999999999999987654

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.16  E-value=6.1e-12  Score=85.29  Aligned_cols=47  Identities=38%  Similarity=0.849  Sum_probs=39.7

Q ss_pred             CCCccccccccCCCc---cEEe-cCCCcccCHHHHHHHHhcCCCCccccccc
Q 023674          218 DSGKECVICLSEPRD---TTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPV  265 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~---~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i  265 (279)
                      +++.+|.||++...+   ++.+ .|+|. ||.+|+..|...+++||+||+.|
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCc-ccHHHHHHHHHhCCcCCCCCCEe
Confidence            345689999998764   4445 59999 99999999999999999999876

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.7e-12  Score=86.21  Aligned_cols=46  Identities=33%  Similarity=0.733  Sum_probs=40.1

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      .+..+|.||++...+.++++|||. ||..|+..|   +.+||+||+.|..
T Consensus         4 ~~~l~C~IC~~~~~~p~~lpCgH~-fC~~Ci~~~---~~~CP~Cr~~~~~   49 (56)
T d1bora_           4 FQFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEAS---GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSS---SSSCSSCCSSSSC
T ss_pred             cCCCCCcccCcccCCCEEecCCCH-HhHHHHHcC---CCcCcCCCCcccC
Confidence            345799999999999999999999 999998754   5789999998853

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=4.5e-11  Score=88.20  Aligned_cols=48  Identities=27%  Similarity=0.573  Sum_probs=42.3

Q ss_pred             CCccccccccCCCccEEecCCCcccCHHHHHHHHh-cCCCCccccccccc
Q 023674          219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVER  267 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~~i~~  267 (279)
                      +...|.||++...+.++++|||. ||..|+..|.. +..+||+||.++..
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCcCCccCCcchhcceecCCCCh-hhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            45689999999999999999999 99999999875 45689999998753

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=8.2e-11  Score=82.17  Aligned_cols=48  Identities=25%  Similarity=0.708  Sum_probs=38.3

Q ss_pred             CCccccccccCC-----CccEEecCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674          219 SGKECVICLSEP-----RDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER  267 (279)
Q Consensus       219 ~~~~C~IC~~~~-----~~~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~  267 (279)
                      ++..|.||++..     ..+++++|||. ||.+|+..|... +.+||+||+.|..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChH-hhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            356899999752     22466799999 999999999754 5679999999864

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=8e-11  Score=78.66  Aligned_cols=46  Identities=24%  Similarity=0.601  Sum_probs=37.3

Q ss_pred             ccccccccCCCc----cEEecCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674          221 KECVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER  267 (279)
Q Consensus       221 ~~C~IC~~~~~~----~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~  267 (279)
                      .+|.||+++..+    ..+++|||. ||.+|+..|... +.+||+||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~-~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCC-CCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCc-cchHHHHHHHhhcCCCCCccCCcCCC
Confidence            379999997643    345689999 999999999875 4579999998763

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=1.5e-10  Score=78.48  Aligned_cols=45  Identities=22%  Similarity=0.338  Sum_probs=42.0

Q ss_pred             cccccccCCCccEEec-CCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          222 ECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       222 ~C~IC~~~~~~~~~lP-CgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      .|.||++..++.++++ |||. ||.+|+..|..++.+||+||+++..
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~-fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCccCCchHHhcCccCCCCCc-ccHHHHHHHHhhccCCCccCCcCCH
Confidence            6999999999999886 9999 9999999999998999999999865

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.8e-10  Score=87.39  Aligned_cols=46  Identities=30%  Similarity=0.748  Sum_probs=40.8

Q ss_pred             CccccccccCCCccEEecCCCcccCHHHHHHHHhcC---CCCcccccccc
Q 023674          220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT---NRCPICRQPVE  266 (279)
Q Consensus       220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~---~~CPiCR~~i~  266 (279)
                      ..+|.||++...+.+.++|||. ||..|+..|+.+.   ..||+||..+.
T Consensus        21 ~l~CpIC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CcCCCccCchhCCeEEcCCCCc-hhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            4689999999999999999999 9999999987654   47999999875

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.1e-10  Score=82.15  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=30.3

Q ss_pred             cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674          233 TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE  266 (279)
Q Consensus       233 ~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~  266 (279)
                      +++++|||. ||..|+..|...+++||+||+.+.
T Consensus        52 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          52 VAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             EEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             eEEccccCc-ccHHHHHHHHHHCCcCCCCCCccc
Confidence            567899999 999999999999999999999865

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=6.1e-10  Score=85.68  Aligned_cols=46  Identities=20%  Similarity=0.551  Sum_probs=36.6

Q ss_pred             CccccccccCCC------------------ccEEecCCCcccCHHHHHHHHhcC-----CCCcccccccc
Q 023674          220 GKECVICLSEPR------------------DTTVLPCRHMCMCSECAKVLQFQT-----NRCPICRQPVE  266 (279)
Q Consensus       220 ~~~C~IC~~~~~------------------~~~~lPCgH~~~C~~C~~~l~~~~-----~~CPiCR~~i~  266 (279)
                      +..|.||++...                  .+.+++|||. ||.+|+..|+...     .+||+||+.+.
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~-FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCCh-hhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            357999998653                  2467899999 9999999998643     37999998764

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.73  E-value=3.3e-09  Score=76.17  Aligned_cols=49  Identities=12%  Similarity=0.177  Sum_probs=43.7

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcC-CCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~-~~CPiCR~~i~~  267 (279)
                      .++..|.||++-++|.++++|||. ||..|+..|.... ..||+||..+..
T Consensus         6 P~~l~CpIc~~~m~dPV~~~cgh~-fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CccCCCcCcCchhhCceEccCCCc-chHHHHHHHHHHCCCCCCcccccCCc
Confidence            456899999999999999999999 9999999998654 569999998865

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=2.4e-09  Score=77.38  Aligned_cols=49  Identities=12%  Similarity=0.071  Sum_probs=43.3

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~  267 (279)
                      .++..|.||++-+++.++++|||. ||..|+..|..+ ...||+||..+..
T Consensus         5 P~~l~CpIc~~l~~dPv~~~cGht-fc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           5 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CccccCcCcCchhhhhcccCCcCe-ecHHHHHHHHhcCCccCCCccccccc
Confidence            456789999999999999999999 999999998764 4579999998864

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.70  E-value=3.1e-09  Score=72.62  Aligned_cols=48  Identities=19%  Similarity=0.384  Sum_probs=40.1

Q ss_pred             CCCccccccccCCCccEEecCC-----CcccCHHHHHHHHhc--CCCCcccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCR-----HMCMCSECAKVLQFQ--TNRCPICRQPVE  266 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCg-----H~~~C~~C~~~l~~~--~~~CPiCR~~i~  266 (279)
                      ++...|.||++...+..+.+|+     |. ||..|+..|...  +.+||+||+.+.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~-~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELEN-VHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGS-CCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCE-EcHHHHHHHHhhCCCCCCcccCCeee
Confidence            5667899999988887777775     88 999999999753  467999999864

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.5e-09  Score=81.21  Aligned_cols=46  Identities=28%  Similarity=0.663  Sum_probs=39.0

Q ss_pred             CCccccccccCCCccEEe-cCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          219 SGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      +...|.||++.+.+.+.+ +|||. ||..|+..|.  .++||+||..+..
T Consensus        21 ~~l~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~--~~~CP~Cr~~~~~   67 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCI--GTGCPVCYTPAWI   67 (97)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGT--TTBCSSSCCBCSC
T ss_pred             hcCCCccCCchhhcCceeCCCCCc-hhHHHHHHHH--hccccccCCcCch
Confidence            356899999999998764 89999 9999999987  3569999987653

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.5e-08  Score=74.77  Aligned_cols=50  Identities=16%  Similarity=0.081  Sum_probs=45.0

Q ss_pred             CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674          218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER  267 (279)
Q Consensus       218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~  267 (279)
                      -++..|.||++-++|.++++|+|..||..|+..|+.....||+||+.+..
T Consensus        20 P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            45789999999999999999887559999999999888999999998864

>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Cbl
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.1e-06  Score=61.90  Aligned_cols=69  Identities=16%  Similarity=0.372  Sum_probs=54.8

Q ss_pred             eEEeCCCCCCeeEEEEEecCCCCccEEEEEeeeecCcceeeeccccccCCceeeeccccCceecCCCCCCCCCC
Q 023674          108 RVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLS  181 (279)
Q Consensus       108 rl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a~E~~~~~l~~~~~~~~~~~~~~~~~gl~Q~F~~~sg~~id~~  181 (279)
                      ||++..+.+|.|.  |+++|++.|+|+|.|++.++...++++.++++++..--.+.+|.   |..+.|...+.+
T Consensus        17 rL~~~~~kPGSYi--FRlSCTrlGQWAIGyvt~dg~IlQTIp~nk~L~qaLidG~reGf---ylyPdG~~~npd   85 (88)
T d3buxb3          17 RLQKFIHKPGSYI--FRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGF---YLFPDGRNQNPD   85 (88)
T ss_dssp             HHGGGTTSTTEEE--EEECSSSTTSEEEEEECTTSCEEEECCSSCCHHHHHHHHHHHTS---SCEETTCSCCCC
T ss_pred             HHHHHhcCCCceE--EeeccccccceeeeeeccCCceeeeccCccHHHHHHHhccccee---EECCCCCCCCCC
Confidence            5566667899999  99999999999999999999999999999999887433344444   667777655443

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1e-05  Score=59.14  Aligned_cols=44  Identities=27%  Similarity=0.571  Sum_probs=32.7

Q ss_pred             CCccccccccCCC--c-cEEecCCCcccCHHHHHHHHhc-----C---CCCccccc
Q 023674          219 SGKECVICLSEPR--D-TTVLPCRHMCMCSECAKVLQFQ-----T---NRCPICRQ  263 (279)
Q Consensus       219 ~~~~C~IC~~~~~--~-~~~lPCgH~~~C~~C~~~l~~~-----~---~~CPiCR~  263 (279)
                      ...+|.||++...  + +.++.|+|. ||.+|+..|...     .   -+||.|+-
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCcCccCCCcccCCceEEECCCCCE-eCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            3468999999864  3 455689999 999999987642     1   25998654

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.57  E-value=0.066  Score=36.35  Aligned_cols=33  Identities=27%  Similarity=0.619  Sum_probs=27.9

Q ss_pred             CCccccccccCCCccEEecC----CCcccCHHHHHHHH
Q 023674          219 SGKECVICLSEPRDTTVLPC----RHMCMCSECAKVLQ  252 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lPC----gH~~~C~~C~~~l~  252 (279)
                      ....|.+|.+...|+-|+-|    +|. ||..|.+...
T Consensus         7 ~~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~si   43 (80)
T d2cs3a1           7 GPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRESI   43 (80)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHHH
T ss_pred             CceeeeeehhhhcCCceEeCCCCcCCc-eeccccHHHH
Confidence            34789999999999988888    588 9999998743

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.96  E-value=0.58  Score=30.36  Aligned_cols=42  Identities=26%  Similarity=0.709  Sum_probs=33.2

Q ss_pred             CCccccccccCCCccEEec---CCCcccCHHHHHHHHhcCCCCccc
Q 023674          219 SGKECVICLSEPRDTTVLP---CRHMCMCSECAKVLQFQTNRCPIC  261 (279)
Q Consensus       219 ~~~~C~IC~~~~~~~~~lP---CgH~~~C~~C~~~l~~~~~~CPiC  261 (279)
                      ....|.-|+....+....-   |++. ||.+|-.-+...-..||.|
T Consensus        14 ~~~~C~gC~~~l~~~~~y~C~~C~~~-FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          14 GERFCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             SCCEETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTT
T ss_pred             CCCCccCCCCcCCCCceEECcCCCCc-cccccchhhhhhhcCCCCC
Confidence            3568999998887766554   7788 9999988776666789988