Citrus Sinensis ID: 023678
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 279 | 2.2.26 [Sep-21-2011] | |||||||
| Q55512 | 338 | Aspartate-semialdehyde de | N/A | no | 0.784 | 0.647 | 0.515 | 2e-61 | |
| O67716 | 340 | Aspartate-semialdehyde de | yes | no | 0.781 | 0.641 | 0.526 | 1e-57 | |
| P49420 | 343 | Aspartate-semialdehyde de | yes | no | 0.806 | 0.655 | 0.476 | 2e-55 | |
| P23247 | 337 | Aspartate-semialdehyde de | yes | no | 0.788 | 0.652 | 0.473 | 2e-52 | |
| O31219 | 347 | Aspartate-semialdehyde de | yes | no | 0.784 | 0.631 | 0.466 | 2e-52 | |
| Q60080 | 316 | Aspartate-semialdehyde de | N/A | no | 0.788 | 0.696 | 0.468 | 1e-51 | |
| Q04797 | 346 | Aspartate-semialdehyde de | yes | no | 0.774 | 0.624 | 0.467 | 8e-51 | |
| Q56732 | 338 | Aspartate-semialdehyde de | N/A | no | 0.781 | 0.644 | 0.469 | 6e-50 | |
| Q56734 | 338 | Aspartate-semialdehyde de | yes | no | 0.781 | 0.644 | 0.464 | 7e-50 | |
| Q59291 | 343 | Aspartate-semialdehyde de | yes | no | 0.770 | 0.626 | 0.480 | 2e-49 |
| >sp|Q55512|DHAS_SYNY3 Aspartate-semialdehyde dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=asd PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/225 (51%), Positives = 157/225 (69%), Gaps = 6/225 (2%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VA++G TGAVG E L +L+ R+FP +K+LAS RSAGK L FQ + ++ + +F G
Sbjct: 7 VAILGATGAVGTELLELLASRNFPLAELKLLASPRSAGKTLEFQGEKLPIQAVDGSAFKG 66
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
D+ L SAGGS SK++ + G+++VDNSSAFRMV VPLV+PE+NPEA
Sbjct: 67 CDLVLASAGGSTSKRWAEEITKAGAVMVDNSSAFRMVPEVPLVVPEINPEA------AQN 120
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
+IANPNC+TI+ +A PLH+ + R+VV+TYQ+ASGAGA AMEE++ Q+R++LEG
Sbjct: 121 HQGIIANPNCTTILMGVAIYPLHQLQPIKRIVVATYQSASGAGAMAMEEVKHQSRDILEG 180
Query: 222 KPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVS 266
K P +I AFNLF HN+P+ N Y EEEMKMV+ETRKI+ +
Sbjct: 181 KIPQAEILPYPLAFNLFPHNSPITANHYCEEEMKMVQETRKIFAA 225
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 1 |
| >sp|O67716|DHAS_AQUAE Aspartate-semialdehyde dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=asd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (568), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/224 (52%), Positives = 155/224 (69%), Gaps = 6/224 (2%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSFD 100
VA+VG TG VG+ FL VL +R+FP + + AS+RS GK L+F+ K YTV+ L E+SF
Sbjct: 5 VAIVGATGEVGRTFLKVLEERNFPVDELVLYASERSEGKVLTFKGKEYTVKALNKENSFK 64
Query: 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGM 160
G+DIALFSAGGS SK++ P + G +V+DNSSA+RM +VPLV+PEVNPE + K
Sbjct: 65 GIDIALFSAGGSTSKEWAPKFAKDGVVVIDNSSAWRMDPDVPLVVPEVNPEDVKDFK--- 121
Query: 161 GKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLE 220
K +IANPNCSTI ++A P++ +A + R+VVSTYQA SGAGA A+E+L+ QT+ E
Sbjct: 122 -KKGIIANPNCSTIQMVVALKPIYDKAGIKRVVVSTYQAVSGAGAKAIEDLKNQTKAWCE 180
Query: 221 GKP-PTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
GK P + F Q AFN H E+GY +EE KM+ ETRKI
Sbjct: 181 GKEMPKAQKFPHQIAFNALPHIDVFFEDGYTKEENKMLYETRKI 224
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Aquifex aeolicus (strain VF5) (taxid: 224324) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P49420|DHAS_PROMA Aspartate-semialdehyde dehydrogenase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=asd PE=3 SV=2 | Back alignment and function description |
|---|
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 160/235 (68%), Gaps = 10/235 (4%)
Query: 33 MSYQESAP----SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKA 88
M+ Q+ P ++AV+G +GAVG E L +L +R FP R +++LAS+RSAG+ F+ +
Sbjct: 1 MTLQKPFPDRPLTLAVLGSSGAVGAEILKILEERSFPIRELRLLASERSAGQVQFFKGED 60
Query: 89 YTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEV 148
V++++ + F+ VD+ L SAGGSIS+K+ + G+++VDNS+A+RM +VPLV+PEV
Sbjct: 61 LVVKKVSPEGFEDVDLVLASAGGSISRKWRKVINSAGAVIVDNSNAYRMEPDVPLVVPEV 120
Query: 149 NPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAM 208
NP +V KG LIANPNC+TI+ + PL + + R+VVSTYQ+ASGAGA AM
Sbjct: 121 NPS-----QVFTHKG-LIANPNCTTILLALVLAPLSAQLPIKRVVVSTYQSASGAGARAM 174
Query: 209 EELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
EL+ +++VL G P +I AFNLF HN+P+ N Y EEEMKM+ ETRKI
Sbjct: 175 NELKQLSQDVLNGNIPKSEILPYSLAFNLFLHNSPLQSNNYCEEEMKMINETRKI 229
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P23247|DHAS2_VIBCH Aspartate-semialdehyde dehydrogenase 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=asd2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 145/224 (64%), Gaps = 4/224 (1%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
+VA+ G TGAVG+ L VL +R+FP + +LAS+RS GK F K V+ + E +
Sbjct: 6 NVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWS 65
Query: 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGM 160
V IALFSAGG +S K+ PIA E G +V+DN+S FR ++PLV+PEVNPEA++ +
Sbjct: 66 QVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR--- 122
Query: 161 GKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLE 220
+IANPNCSTI L+A P++ + R+ V+TYQ+ SGAG A ++EL QT ++L
Sbjct: 123 -NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLN 181
Query: 221 GKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
G P FSQQ AFN ++NGY +EEMKMV ET+KI+
Sbjct: 182 GYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIF 225
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|O31219|DHAS_LEGPN Aspartate-semialdehyde dehydrogenase OS=Legionella pneumophila GN=asd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 147/223 (65%), Gaps = 4/223 (1%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
+VA+VG TGAVG+ FL+VL +R+FP +S+ LAS RS GK ++F+D+ V +L E F
Sbjct: 6 NVAIVGATGAVGETFLTVLEERNFPIKSLYPLASSRSVGKTVTFRDQELDVLDLAEFDFS 65
Query: 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGM 160
VD+ALFSAGG++SK++ P AV G +VVDN+S FR +++PLV+ P + S
Sbjct: 66 KVDLALFSAGGAVSKEYAPKAVAAGCVVVDNTSCFRYEDDIPLVV----PGSESSSNRDY 121
Query: 161 GKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLE 220
K +IANPNCSTI ++A P++ ++R+ V+TYQ+ SG G A+ EL Q ++L
Sbjct: 122 TKRGIIANPNCSTIQMVVALKPIYDAVGISRINVATYQSVSGTGKKAISELVAQVGDLLN 181
Query: 221 GKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
G+P +++ QQ AFN H +NGY EEMKMV ETRKI
Sbjct: 182 GRPANVQVYPQQIAFNALPHIDQFEDNGYTREEMKMVWETRKI 224
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Legionella pneumophila (taxid: 446) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q60080|DHAS_VIBMI Aspartate-semialdehyde dehydrogenase (Fragment) OS=Vibrio mimicus GN=asd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 143/224 (63%), Gaps = 4/224 (1%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
+VA+ G TGAVG+ L VL +R+FP + +LAS+RS GK F K V+ + E +
Sbjct: 6 NVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWS 65
Query: 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGM 160
V IALFSAGG +S + PI E G +V+DN+S FR ++PLVIPEVNPEA++ +
Sbjct: 66 QVHIALFSAGGELSAHWAPIRAEAGVVVIDNTSHFRYDYDIPLVIPEVNPEAIAEFR--- 122
Query: 161 GKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLE 220
+IANPNCSTI L+A P++ + R+ V+TYQ+ SGAG A ++EL QT ++L
Sbjct: 123 -NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLN 181
Query: 221 GKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
G P FSQQ AFN ++NGY +EEMKMV ET+KI+
Sbjct: 182 GYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIF 225
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Vibrio mimicus (taxid: 674) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q04797|DHAS_BACSU Aspartate-semialdehyde dehydrogenase OS=Bacillus subtilis (strain 168) GN=asd PE=1 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 149/229 (65%), Gaps = 13/229 (5%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TGAVGQ+ L L DR+F ++ +L+SKRSAG +++F+ + TV+E + +SF+G
Sbjct: 7 VAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEASPESFEG 66
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
V+IALFSAGGS+S+ P AV++G+IV+DN+SAFRM EN PLV+PEVN +
Sbjct: 67 VNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLH------E 120
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
+IANPNCSTI + A P+ + + +++VSTYQA SGAG A++EL QT+ +L
Sbjct: 121 HNGIIANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAILNK 180
Query: 222 KPPTCKIF-------SQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
+ +I Q AFN +NGY EEMKM+ ET+KI
Sbjct: 181 EEIEPEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEEMKMINETKKI 229
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q56732|DHAS_SHESP Aspartate-semialdehyde dehydrogenase OS=Shewanella sp. (strain DB6705) GN=asd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 106/226 (46%), Positives = 147/226 (65%), Gaps = 8/226 (3%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
+V V+G +GAVGQ + +L +R+FP + LAS RSAG +SF K VE L D FD
Sbjct: 6 NVVVLGASGAVGQTIIEILQERNFPIAKLFPLASSRSAGGTVSFNGK--QVEILDVDDFD 63
Query: 101 G--VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158
I FSAGG +S+K+ PIA E G +V+DN+S FR +VPLVIPEVNPEA++ +
Sbjct: 64 WSQAQIGFFSAGGDVSEKWAPIAAESGCVVIDNTSHFRYDNDVPLVIPEVNPEAIADFR- 122
Query: 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREV 218
+IANPNCSTI L+A P++ ++R+ V+TYQ+ SG+G A+ EL Q ++
Sbjct: 123 ---NRNIIANPNCSTIQMLVALKPIYDAFGISRINVATYQSVSGSGKEAIAELAGQCSKL 179
Query: 219 LEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
L+G P K++S+Q AFN+ +ENGY +EEMKMV ET+KI+
Sbjct: 180 LQGLPIEPKVYSKQIAFNVLPQIDTFMENGYTKEEMKMVWETQKIF 225
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Shewanella sp. (strain DB6705) (taxid: 126830) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q56734|DHAS_SHEVD Aspartate-semialdehyde dehydrogenase OS=Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12) GN=asd PE=3 SV=2 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 146/226 (64%), Gaps = 8/226 (3%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
+V V+G +GAVGQ + +L +R+FP + LAS RSAG +SF K VE L D FD
Sbjct: 6 NVVVLGASGAVGQTMIEILEERNFPVAKLFPLASSRSAGGTVSFNGK--QVEILDVDDFD 63
Query: 101 G--VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158
I FSAGG +S+K+ PIA E G +V+DN+S FR +VPLVIPEVNPEA++ +
Sbjct: 64 WSQAQIGFFSAGGDVSEKWAPIAAENGCVVIDNTSQFRYDNDVPLVIPEVNPEAIADFR- 122
Query: 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREV 218
+IANPNCSTI L+A P++ ++R+ V+TYQ+ SG+G A+ EL Q ++
Sbjct: 123 ---NRNIIANPNCSTIQMLVALKPIYDAFGISRINVATYQSVSGSGKEAITELAGQCSKL 179
Query: 219 LEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
L+G P K++ +Q AFN+ +ENGY +EEMKMV ET+KI+
Sbjct: 180 LQGLPAESKVYPKQIAFNVLPQIDKFMENGYTKEEMKMVWETQKIF 225
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12) (taxid: 637905) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q59291|DHAS_CAMJE Aspartate-semialdehyde dehydrogenase OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168) GN=asd PE=1 SV=2 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 150/229 (65%), Gaps = 14/229 (6%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-- 99
+A+VG TGAVG+E L+VL + DFP SI LAS +S G ++ F+ KAY V+ELTE+ F
Sbjct: 7 IAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVGSEVEFKGKAYKVKELTENVFKE 66
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG 159
+ +DIA FSAGGS+S+K+ AVE G++V+DN+S FRM ++VPLV+PE NPE + K
Sbjct: 67 NPIDIAFFSAGGSVSEKYAKFAVESGAVVIDNTSHFRMEKDVPLVVPECNPEDIKDWK-- 124
Query: 160 MGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEEL--ELQT-- 215
K +IANPNCSTI + PL+ + R+ VSTYQAASGAG M+EL +Q+
Sbjct: 125 --KTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTYQAASGAGKEGMQELVEAMQSFF 182
Query: 216 -REVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
++ E +P T F A NL ++N Y +EE+KMV ET+KI
Sbjct: 183 AFKLDEFEPQT---FPYTLALNLIPQIDVFMDNDYTKEELKMVNETQKI 228
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168) (taxid: 192222) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 279 | ||||||
| 224111424 | 375 | predicted protein [Populus trichocarpa] | 0.942 | 0.701 | 0.833 | 1e-121 | |
| 224099567 | 375 | predicted protein [Populus trichocarpa] | 0.942 | 0.701 | 0.829 | 1e-120 | |
| 297849900 | 697 | F10B6.22 [Arabidopsis lyrata subsp. lyra | 0.992 | 0.397 | 0.760 | 1e-119 | |
| 255584961 | 377 | aspartate semialdehyde dehydrogenase, pu | 0.946 | 0.700 | 0.826 | 1e-118 | |
| 8778230 | 730 | F10B6.22 [Arabidopsis thaliana] | 0.989 | 0.378 | 0.765 | 1e-118 | |
| 15223910 | 375 | semialdehyde dehydrogenase-like protein | 0.935 | 0.696 | 0.819 | 1e-117 | |
| 357521393 | 379 | Aspartate-semialdehyde dehydrogenase [Me | 0.939 | 0.691 | 0.810 | 1e-115 | |
| 356524624 | 377 | PREDICTED: aspartate-semialdehyde dehydr | 0.942 | 0.697 | 0.800 | 1e-115 | |
| 224147077 | 344 | predicted protein [Populus trichocarpa] | 0.831 | 0.674 | 0.896 | 1e-115 | |
| 359472657 | 379 | PREDICTED: aspartate-semialdehyde dehydr | 0.874 | 0.643 | 0.852 | 1e-113 |
| >gi|224111424|ref|XP_002315850.1| predicted protein [Populus trichocarpa] gi|222864890|gb|EEF02021.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/264 (83%), Positives = 239/264 (90%), Gaps = 1/264 (0%)
Query: 1 MATFSSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLS 60
MAT + +QTH +KL + KP+ +R+RM+ QE+APS+AVVGVTGAVGQEFLSVLS
Sbjct: 1 MATLTHPTSQTHLFTKL-SLKPKKFTSPSRIRMALQENAPSLAVVGVTGAVGQEFLSVLS 59
Query: 61 DRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120
DRDFPYRSIKMLASKRSAGKQL+FQD+ YT+EELTEDSFDGVDIALFSAGGSISK FGP+
Sbjct: 60 DRDFPYRSIKMLASKRSAGKQLTFQDRNYTIEELTEDSFDGVDIALFSAGGSISKHFGPV 119
Query: 121 AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180
AVEKGS+VVDNSSAFRM E +PLVIPEVNPEAM GIKVG GKGALIANPNCSTIICLMAA
Sbjct: 120 AVEKGSVVVDNSSAFRMEEGIPLVIPEVNPEAMEGIKVGTGKGALIANPNCSTIICLMAA 179
Query: 181 TPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH 240
TPLH+ AKV RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTC IF QQYAFNLFSH
Sbjct: 180 TPLHKHAKVIRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCNIFKQQYAFNLFSH 239
Query: 241 NAPVLENGYNEEEMKMVKETRKIW 264
NAP+L NGYNEEEMK+VKETRKIW
Sbjct: 240 NAPILSNGYNEEEMKLVKETRKIW 263
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099567|ref|XP_002311534.1| predicted protein [Populus trichocarpa] gi|222851354|gb|EEE88901.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/264 (82%), Positives = 240/264 (90%), Gaps = 1/264 (0%)
Query: 1 MATFSSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLS 60
MA+ + +QT +KL +++P+ +R+RMS QE+APS+AVVGVTGAVGQEFLSVLS
Sbjct: 1 MASLAHPGSQTRLFTKL-SHQPKKFTPPSRIRMSLQENAPSLAVVGVTGAVGQEFLSVLS 59
Query: 61 DRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120
DRDFPYRSIKMLASKRSAGKQL+FQD+ YT+EELTEDSFDGVDIALFSAGGSISK FGP+
Sbjct: 60 DRDFPYRSIKMLASKRSAGKQLTFQDRNYTIEELTEDSFDGVDIALFSAGGSISKHFGPV 119
Query: 121 AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180
AV+KG+IVVDNSSAFRM E +PLVIPEVNPEAM GIKVGMGKGALIANPNCSTIICLMAA
Sbjct: 120 AVDKGAIVVDNSSAFRMEEGIPLVIPEVNPEAMEGIKVGMGKGALIANPNCSTIICLMAA 179
Query: 181 TPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH 240
TPLHR AKV RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTC IF QQYAFNLFSH
Sbjct: 180 TPLHRHAKVQRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCNIFKQQYAFNLFSH 239
Query: 241 NAPVLENGYNEEEMKMVKETRKIW 264
NAP+L NGYNEEEMK+VKETRKIW
Sbjct: 240 NAPILSNGYNEEEMKLVKETRKIW 263
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849900|ref|XP_002892831.1| F10B6.22 [Arabidopsis lyrata subsp. lyrata] gi|297338673|gb|EFH69090.1| F10B6.22 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/292 (76%), Positives = 243/292 (83%), Gaps = 15/292 (5%)
Query: 1 MATFSSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLS 60
MATF+ QTHF+S+LP + + RV+MS QESAPS+AVVGVTGAVGQEFLSVLS
Sbjct: 323 MATFTHQTPQTHFLSRLPL-RATPRHFSARVKMSLQESAPSLAVVGVTGAVGQEFLSVLS 381
Query: 61 DRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120
DRDFPY S+KMLASKRSAGK+++F + YTVEELT +SFDGVDIALFSAGGSISK+FGP+
Sbjct: 382 DRDFPYSSVKMLASKRSAGKRVAFDGREYTVEELTAESFDGVDIALFSAGGSISKEFGPL 441
Query: 121 AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180
A EKG+IVVDNSSAFRMV+ VPLVIPEVNPEAM GIKVGMGKGALIANPNCSTIICLMA
Sbjct: 442 AAEKGTIVVDNSSAFRMVDGVPLVIPEVNPEAMKGIKVGMGKGALIANPNCSTIICLMAV 501
Query: 181 TPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH 240
TPLHR AKV RMVVSTYQAASGAGAAAMEEL QTREVLEGKPPTC IF QQYAFNLFSH
Sbjct: 502 TPLHRHAKVKRMVVSTYQAASGAGAAAMEELVQQTREVLEGKPPTCNIFGQQYAFNLFSH 561
Query: 241 NAPVLENGYNEEEMKMVKETRKIWVS--------------FKMNFFVSPCSC 278
NAP+L+NGYNEEEMK+VKETRKIWVS F F+ CSC
Sbjct: 562 NAPILDNGYNEEEMKLVKETRKIWVSGLLKVLLCVHFTLIFCSKFWFYACSC 613
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255584961|ref|XP_002533192.1| aspartate semialdehyde dehydrogenase, putative [Ricinus communis] gi|223526990|gb|EEF29184.1| aspartate semialdehyde dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/265 (82%), Positives = 234/265 (88%), Gaps = 1/265 (0%)
Query: 1 MATFSSHQTQTHFISKLP-ANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVL 59
MAT + Q H SK +KP+ P +R++MS QE+ PS+AVVGVTGAVGQEFLSVL
Sbjct: 1 MATLTHPHHQAHLFSKFSLKSKPKFTPSSSRIKMSLQETGPSLAVVGVTGAVGQEFLSVL 60
Query: 60 SDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119
SDR+FPYRSIKMLASKRSAGKQL+FQDK YTVEELT DSFDGVDIALFSAGGSISK+FGP
Sbjct: 61 SDRNFPYRSIKMLASKRSAGKQLTFQDKNYTVEELTADSFDGVDIALFSAGGSISKEFGP 120
Query: 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMA 179
IAV+KGSIVVDNSSAFRMVE VPLVIPEVNPEAM IK G+ KGALIANPNCSTIICLMA
Sbjct: 121 IAVDKGSIVVDNSSAFRMVEGVPLVIPEVNPEAMKEIKFGLKKGALIANPNCSTIICLMA 180
Query: 180 ATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFS 239
ATPLHR AKV RMVVSTYQAASGAGAAAMEELELQTREVL+GKPPTC IF QQYAFNLFS
Sbjct: 181 ATPLHRHAKVQRMVVSTYQAASGAGAAAMEELELQTREVLQGKPPTCTIFKQQYAFNLFS 240
Query: 240 HNAPVLENGYNEEEMKMVKETRKIW 264
HNAPV NGYNEEEMK+VKETRKIW
Sbjct: 241 HNAPVQSNGYNEEEMKLVKETRKIW 265
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8778230|gb|AAF79239.1|AC006917_24 F10B6.22 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/294 (76%), Positives = 244/294 (82%), Gaps = 18/294 (6%)
Query: 1 MATFSSHQTQTHFISKLPAN-KPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVL 59
MATF+ QTHF+S+LP KPR RV+MS QESAPS+AVVGVTGAVGQEFLSVL
Sbjct: 324 MATFTHQTPQTHFLSRLPLRAKPRH--FSARVKMSLQESAPSLAVVGVTGAVGQEFLSVL 381
Query: 60 SDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119
SDRDFPY SIKMLASKRSAGK+++F YTVEELT DSF+GVDIALFSAGGSISK+FGP
Sbjct: 382 SDRDFPYSSIKMLASKRSAGKRVAFDGHEYTVEELTADSFNGVDIALFSAGGSISKEFGP 441
Query: 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMA 179
+A EKG+IVVDNSSAFRMV+ VPLVIPEVNPEAM GIKVGMGKGALIANPNCSTIICLMA
Sbjct: 442 LAAEKGTIVVDNSSAFRMVDGVPLVIPEVNPEAMKGIKVGMGKGALIANPNCSTIICLMA 501
Query: 180 ATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFS 239
TPLH AKV RMVVSTYQAASGAGAAAMEEL QTREVLEGKPPTC IF QQYAFNLFS
Sbjct: 502 VTPLHHHAKVKRMVVSTYQAASGAGAAAMEELVQQTREVLEGKPPTCNIFGQQYAFNLFS 561
Query: 240 HNAPVLENGYNEEEMKMVKETRKIWVS---------------FKMNFFVSPCSC 278
HNAP+L+NGYNEEEMK+VKETRKIWVS FK +++P SC
Sbjct: 562 HNAPILDNGYNEEEMKLVKETRKIWVSGYLSAILCSFHFDLLFKNFRYLTPISC 615
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223910|ref|NP_172934.1| semialdehyde dehydrogenase-like protein [Arabidopsis thaliana] gi|17979524|gb|AAL50097.1| At1g14810/F10B6_6 [Arabidopsis thaliana] gi|20856224|gb|AAM26654.1| At1g14810/F10B6_6 [Arabidopsis thaliana] gi|21536731|gb|AAM61063.1| aspartate-semialdehyde dehydrogenase, putative [Arabidopsis thaliana] gi|332191107|gb|AEE29228.1| semialdehyde dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/266 (81%), Positives = 234/266 (87%), Gaps = 5/266 (1%)
Query: 1 MATFSSHQTQTHFISKLPANKPRTKPMF--TRVRMSYQESAPSVAVVGVTGAVGQEFLSV 58
MATF+ QTHF+S+LP R KP RV+MS QESAPS+AVVGVTGAVGQEFLSV
Sbjct: 1 MATFTHQTPQTHFLSRLPL---RAKPRHFSARVKMSLQESAPSLAVVGVTGAVGQEFLSV 57
Query: 59 LSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118
LSDRDFPY SIKMLASKRSAGK+++F YTVEELT DSF+GVDIALFSAGGSISK+FG
Sbjct: 58 LSDRDFPYSSIKMLASKRSAGKRVAFDGHEYTVEELTADSFNGVDIALFSAGGSISKEFG 117
Query: 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLM 178
P+A EKG+IVVDNSSAFRMV+ VPLVIPEVNPEAM GIKVGMGKGALIANPNCSTIICLM
Sbjct: 118 PLAAEKGTIVVDNSSAFRMVDGVPLVIPEVNPEAMKGIKVGMGKGALIANPNCSTIICLM 177
Query: 179 AATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLF 238
A TPLH AKV RMVVSTYQAASGAGAAAMEEL QTREVLEGKPPTC IF QQYAFNLF
Sbjct: 178 AVTPLHHHAKVKRMVVSTYQAASGAGAAAMEELVQQTREVLEGKPPTCNIFGQQYAFNLF 237
Query: 239 SHNAPVLENGYNEEEMKMVKETRKIW 264
SHNAP+L+NGYNEEEMK+VKETRKIW
Sbjct: 238 SHNAPILDNGYNEEEMKLVKETRKIW 263
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357521393|ref|XP_003630985.1| Aspartate-semialdehyde dehydrogenase [Medicago truncatula] gi|355525007|gb|AET05461.1| Aspartate-semialdehyde dehydrogenase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/269 (81%), Positives = 237/269 (88%), Gaps = 7/269 (2%)
Query: 1 MATFSSHQTQTHFIS-KLPANKPRTKPMFT----RVRMSYQESAPSVAVVGVTGAVGQEF 55
MA+ S Q F+S LP +P KP + RVRMS QE+AP++AVVGVTGAVGQEF
Sbjct: 1 MASSLSLLRQNTFLSATLPTTRP--KPKYASAPGRVRMSLQENAPTIAVVGVTGAVGQEF 58
Query: 56 LSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115
LSVLSDRDFPY SIKMLASKRSAG++++F+DK Y VEELT +SFDGVDIALFSAGGSISK
Sbjct: 59 LSVLSDRDFPYSSIKMLASKRSAGRRMTFEDKEYVVEELTAESFDGVDIALFSAGGSISK 118
Query: 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTII 175
+FGPIAV +G+IVVDNSSAFRM ENVPLVIPEVNPEAM IKVGMGKGALIANPNCSTII
Sbjct: 119 EFGPIAVNRGTIVVDNSSAFRMDENVPLVIPEVNPEAMEKIKVGMGKGALIANPNCSTII 178
Query: 176 CLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAF 235
CLMAATPLHR AKV RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIF++QYAF
Sbjct: 179 CLMAATPLHRHAKVLRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFNRQYAF 238
Query: 236 NLFSHNAPVLENGYNEEEMKMVKETRKIW 264
NLFSHNA VL NGYNEEEMK+VKETRKIW
Sbjct: 239 NLFSHNASVLSNGYNEEEMKLVKETRKIW 267
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524624|ref|XP_003530928.1| PREDICTED: aspartate-semialdehyde dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/266 (80%), Positives = 236/266 (88%), Gaps = 3/266 (1%)
Query: 1 MATFSSHQTQTHFISKLPANKPRTKPMFT--RVRMSYQESAPSVAVVGVTGAVGQEFLSV 58
M++ S + F LPA +P+ KP F+ R+RMS QE+ PS+AVVGVTGAVGQEFLSV
Sbjct: 1 MSSLSVSRHNHLFSGPLPA-RPKPKPSFSSSRIRMSLQENGPSIAVVGVTGAVGQEFLSV 59
Query: 59 LSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118
LSDRDFPY SIKMLASKRSAG++++F+D+ Y VEELT +SFDGVDIALFSAGGSISK FG
Sbjct: 60 LSDRDFPYSSIKMLASKRSAGRRITFEDRDYVVEELTAESFDGVDIALFSAGGSISKYFG 119
Query: 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLM 178
PIAV++G++VVDNSSAFRM ENVPLVIPEVNPEAM IK G GKGALIANPNCSTIICLM
Sbjct: 120 PIAVDRGTVVVDNSSAFRMDENVPLVIPEVNPEAMQNIKAGTGKGALIANPNCSTIICLM 179
Query: 179 AATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLF 238
AATPLHRRAKV RMVVSTYQAASGAGAAAMEEL+LQTREVLEGKPPTCKIF++QYAFNLF
Sbjct: 180 AATPLHRRAKVLRMVVSTYQAASGAGAAAMEELQLQTREVLEGKPPTCKIFNRQYAFNLF 239
Query: 239 SHNAPVLENGYNEEEMKMVKETRKIW 264
SHNA VL NGYNEEEMKMVKETRKIW
Sbjct: 240 SHNASVLSNGYNEEEMKMVKETRKIW 265
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224147077|ref|XP_002336402.1| predicted protein [Populus trichocarpa] gi|222834908|gb|EEE73357.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/232 (89%), Positives = 220/232 (94%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE 92
M+ QE+APS+AVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL+FQD+ YT+E
Sbjct: 1 MALQENAPSLAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLTFQDRNYTIE 60
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
ELTEDSFDGVDIALFSAGGSISK FGP+AVEKGS+VVDNSSAFRM E +PLVIPEVNPEA
Sbjct: 61 ELTEDSFDGVDIALFSAGGSISKHFGPVAVEKGSVVVDNSSAFRMEEGIPLVIPEVNPEA 120
Query: 153 MSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELE 212
M GIKVG GKGALIANPNCSTIICLMAATPLH+ AKV RMVVSTYQAASGAGAAAMEELE
Sbjct: 121 MEGIKVGTGKGALIANPNCSTIICLMAATPLHKHAKVIRMVVSTYQAASGAGAAAMEELE 180
Query: 213 LQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
LQTREVLEGKPPTC IF QQYAFNLFSHNAP+L NGYNEEEMK+VKETRKIW
Sbjct: 181 LQTREVLEGKPPTCNIFKQQYAFNLFSHNAPILSNGYNEEEMKLVKETRKIW 232
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359472657|ref|XP_003631183.1| PREDICTED: aspartate-semialdehyde dehydrogenase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/244 (85%), Positives = 223/244 (91%)
Query: 21 KPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK 80
+PRT + +RMS QE+APS+AVVGVTGAVGQEFLSVLSDR FPYRSIKMLASKRSAGK
Sbjct: 24 RPRTATPTSTIRMSLQENAPSLAVVGVTGAVGQEFLSVLSDRGFPYRSIKMLASKRSAGK 83
Query: 81 QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN 140
L+F+D Y +EELT DSFDG+DIALFSAGGSISK+FGPIAV++GSIVVDNSSAFRM EN
Sbjct: 84 HLTFEDNDYVIEELTADSFDGIDIALFSAGGSISKQFGPIAVDRGSIVVDNSSAFRMDEN 143
Query: 141 VPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAA 200
VPLVIPEVNP+AM IK+G GKGALIANPNCSTIICLMAATPLHR AKV RMVVSTYQAA
Sbjct: 144 VPLVIPEVNPDAMKHIKLGSGKGALIANPNCSTIICLMAATPLHRCAKVVRMVVSTYQAA 203
Query: 201 SGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKET 260
SGAGAAAMEELELQTREVLEGK PTCKIF QQYAFNLFSHNAPVL NGYNEEEMK+VKET
Sbjct: 204 SGAGAAAMEELELQTREVLEGKQPTCKIFKQQYAFNLFSHNAPVLPNGYNEEEMKLVKET 263
Query: 261 RKIW 264
RKIW
Sbjct: 264 RKIW 267
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 279 | ||||||
| TAIR|locus:2006867 | 375 | AT1G14810 [Arabidopsis thalian | 0.935 | 0.696 | 0.759 | 1e-100 | |
| TIGR_CMR|DET_0972 | 338 | DET_0972 "aspartate-semialdehy | 0.734 | 0.606 | 0.473 | 5.6e-45 | |
| TIGR_CMR|BA_3937 | 348 | BA_3937 "aspartate-semialdehyd | 0.734 | 0.589 | 0.444 | 1.2e-42 | |
| TIGR_CMR|CHY_1154 | 339 | CHY_1154 "aspartate-semialdehy | 0.727 | 0.598 | 0.476 | 1.2e-42 | |
| TIGR_CMR|CPS_3805 | 339 | CPS_3805 "aspartate-semialdehy | 0.724 | 0.595 | 0.471 | 4e-42 | |
| UNIPROTKB|P23247 | 337 | asd2 "Aspartate-semialdehyde d | 0.745 | 0.617 | 0.438 | 9.6e-41 | |
| TIGR_CMR|VC_2107 | 337 | VC_2107 "aspartate-semialdehyd | 0.745 | 0.617 | 0.438 | 9.6e-41 | |
| TIGR_CMR|ECH_0016 | 336 | ECH_0016 "aspartate-semialdehy | 0.731 | 0.607 | 0.427 | 2.6e-40 | |
| TIGR_CMR|SO_3070 | 338 | SO_3070 "aspartate semialdehyd | 0.745 | 0.615 | 0.396 | 9.9e-39 | |
| TIGR_CMR|CJE_1167 | 343 | CJE_1167 "aspartate-semialdehy | 0.731 | 0.594 | 0.444 | 2.6e-38 |
| TAIR|locus:2006867 AT1G14810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
Identities = 202/266 (75%), Positives = 217/266 (81%)
Query: 1 MATFSSHQT-QTHFISKLPAN-KPRTKPMFTRVRMSYQESAPSXXXXXXXXXXXQEFLSV 58
MATF+ HQT QTHF+S+LP KPR RV+MS QESAPS QEFLSV
Sbjct: 1 MATFT-HQTPQTHFLSRLPLRAKPRH--FSARVKMSLQESAPSLAVVGVTGAVGQEFLSV 57
Query: 59 LSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118
LSDRDFPY SIKMLASKRSAGK+++F YTVEELT DSF+GVDIALFSAGGSISK+FG
Sbjct: 58 LSDRDFPYSSIKMLASKRSAGKRVAFDGHEYTVEELTADSFNGVDIALFSAGGSISKEFG 117
Query: 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLM 178
P+A EKG+IVVDNSSAFRMV+ VPLVIPEVNPEAM GIKVGMGKGALIANPNCSTIICLM
Sbjct: 118 PLAAEKGTIVVDNSSAFRMVDGVPLVIPEVNPEAMKGIKVGMGKGALIANPNCSTIICLM 177
Query: 179 AATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLF 238
A TPLH AKV RMVVSTYQ MEEL QTREVLEGKPPTC IF QQYAFNLF
Sbjct: 178 AVTPLHHHAKVKRMVVSTYQAASGAGAAAMEELVQQTREVLEGKPPTCNIFGQQYAFNLF 237
Query: 239 SHNAPVLENGYNEEEMKMVKETRKIW 264
SHNAP+L+NGYNEEEMK+VKETRKIW
Sbjct: 238 SHNAPILDNGYNEEEMKLVKETRKIW 263
|
|
| TIGR_CMR|DET_0972 DET_0972 "aspartate-semialdehyde dehydrogenase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 100/211 (47%), Positives = 139/211 (65%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
QEF+ VL RDFP ++ +LAS RSAGK++ + + V E DSF+ VDIALFSAG
Sbjct: 16 QEFIKVLEKRDFPMDTVSLLASDRSAGKKMMVKGEEIEVRETAYDSFNNVDIALFSAGAD 75
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
IS+ F PIA + +IVVDNS+AFRM VPLV+PEVN E ++ KG +IANPNCS
Sbjct: 76 ISRHFAPIAAQHKAIVVDNSAAFRMDPKVPLVVPEVNIEDIT-----RHKG-IIANPNCS 129
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQ 232
TI ++A PLH+ + R+VV+T+Q ++EL+ QTR++L+G+ ++S Q
Sbjct: 130 TIQMVVALYPLHKVNPIKRIVVTTFQAVSGTGVNAVDELQTQTRQLLDGQKAVAHVYSHQ 189
Query: 233 YAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
AFN+ L++GY +EE KM++ETRKI
Sbjct: 190 IAFNVLPEIDVFLDSGYTKEEWKMLEETRKI 220
|
|
| TIGR_CMR|BA_3937 BA_3937 "aspartate-semialdehyde dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 97/218 (44%), Positives = 142/218 (65%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
++ L+ L R+FP + +L+SKRSAGK+L F+ + +TV+E T +SF+GVDIALFSAGGS
Sbjct: 20 EQMLNTLEKREFPIGKLTLLSSKRSAGKKLVFKGEEFTVQEATPESFEGVDIALFSAGGS 79
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
+SK+ P A ++G+IVVDN+SAFRM ENVPLV+PEVN + +K G +IANPNCS
Sbjct: 80 VSKQLAPEAAKRGAIVVDNTSAFRMTENVPLVVPEVNE---NDLKEHNG---IIANPNCS 133
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIF--- 229
TI ++A P+ ++ + R++VSTYQ +EEL Q++ +L G+ +
Sbjct: 134 TIQMVVALEPVRQQYGLKRVIVSTYQAVSGAGAAAIEELHEQSQAILNGEEVKANVLPVS 193
Query: 230 -SQQY---AFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
+++ AFN +NG+ EEMKM+ ET+KI
Sbjct: 194 GDKKHFPIAFNAIPQIDKFQDNGFTFEEMKMINETKKI 231
|
|
| TIGR_CMR|CHY_1154 CHY_1154 "aspartate-semialdehyde dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 100/210 (47%), Positives = 132/210 (62%)
Query: 54 EFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113
E L +L +R+FP + +++ A+ RSAGK++ F+ + Y V E T + FDG+DIALF AGGS
Sbjct: 17 EILKILEERNFPVKELRLGATSRSAGKEVVFRGETYKVLETTPEIFDGMDIALF-AGGSA 75
Query: 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCST 173
SK+F IA KG V+DNSSAFR+ +VPLV+PEVNPE V KG +IANPNCST
Sbjct: 76 SKEFARIAAAKGVTVIDNSSAFRLEPDVPLVVPEVNPE-----DVKWHKG-IIANPNCST 129
Query: 174 IICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQY 233
I ++A PLH K+ R+VVSTYQ +EEL+ Q + L G+ +F
Sbjct: 130 IQMVVALKPLHDYGKIKRVVVSTYQAVSGAGIEAIEELKQQVKAYLNGEEAVPNVFPYPI 189
Query: 234 AFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
AFNL H + Y +EE KMV ET+KI
Sbjct: 190 AFNLIPHIDVFQDMYYTKEEWKMVLETQKI 219
|
|
| TIGR_CMR|CPS_3805 CPS_3805 "aspartate-semialdehyde dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 99/210 (47%), Positives = 129/210 (61%)
Query: 56 LSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD--GVDIALFSAGGSI 113
+ +L +R FP + LAS RSAG+ + F ++ +E L D FD V I FSAGGS
Sbjct: 21 MEILEERKFPINKLYPLASARSAGEIIEFNGQS--IEVLNADDFDFSQVQIGFFSAGGST 78
Query: 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCST 173
S KF PIA E G IV+DN+S FR ++PLV+PEVNPEA++ + +IANPNCST
Sbjct: 79 SAKFAPIAAEAGCIVIDNTSEFRYDADIPLVVPEVNPEALADYR----NRNIIANPNCST 134
Query: 174 IICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQY 233
I L+A P++ ++R+ VSTYQ M+EL QT +L GKP K FS+Q
Sbjct: 135 IQMLVALKPIYDAVGISRVNVSTYQSVSGGGKEAMDELAKQTANLLSGKPVESKKFSRQI 194
Query: 234 AFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
AFN+ LENGY +EEMKMV ET+KI
Sbjct: 195 AFNVIPQIDDFLENGYTKEEMKMVWETKKI 224
|
|
| UNIPROTKB|P23247 asd2 "Aspartate-semialdehyde dehydrogenase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 93/212 (43%), Positives = 129/212 (60%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
+ L VL +R+FP + +LAS+RS GK F K V+ + E + V IALFSAGG
Sbjct: 18 ETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGE 77
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
+S K+ PIA E G +V+DN+S FR ++PLV+PEVNPEA++ + +IANPNCS
Sbjct: 78 LSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR----NRNIIANPNCS 133
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQ 232
TI L+A P++ + R+ V+TYQ ++EL QT ++L G P FSQQ
Sbjct: 134 TIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQ 193
Query: 233 YAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
AFN ++NGY +EEMKMV ET+KI+
Sbjct: 194 IAFNCIPQIDQFMDNGYTKEEMKMVWETQKIF 225
|
|
| TIGR_CMR|VC_2107 VC_2107 "aspartate-semialdehyde dehydrogenase, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 93/212 (43%), Positives = 129/212 (60%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
+ L VL +R+FP + +LAS+RS GK F K V+ + E + V IALFSAGG
Sbjct: 18 ETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGE 77
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
+S K+ PIA E G +V+DN+S FR ++PLV+PEVNPEA++ + +IANPNCS
Sbjct: 78 LSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR----NRNIIANPNCS 133
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQ 232
TI L+A P++ + R+ V+TYQ ++EL QT ++L G P FSQQ
Sbjct: 134 TIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQ 193
Query: 233 YAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
AFN ++NGY +EEMKMV ET+KI+
Sbjct: 194 IAFNCIPQIDQFMDNGYTKEEMKMVWETQKIF 225
|
|
| TIGR_CMR|ECH_0016 ECH_0016 "aspartate-semialdehyde dehydrogenase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 89/208 (42%), Positives = 130/208 (62%)
Query: 56 LSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115
L++L+ R FP + + LASK+S GK+LS+ D+ ++L +F DIA+FSAG SIS+
Sbjct: 19 LNILASRSFPAKEVVALASKKSIGKKLSYGDEVLESQDLDSYNFTNTDIAIFSAGSSISQ 78
Query: 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTII 175
++ A KG I++DN+S FRM + +PLV+PE+NPE ++ K +IANPNCSTI
Sbjct: 79 QYARTAANKGCIIIDNTSLFRMEDEIPLVVPEINPEDIAQYY----KHNIIANPNCSTIQ 134
Query: 176 CLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAF 235
L+A PLH+ +K+ R+VVSTYQ M+EL QT+ + K F+++ AF
Sbjct: 135 MLLALNPLHKISKIKRVVVSTYQSVSGAGKSAMDELYSQTKGTFMNQNIAPKQFTKRIAF 194
Query: 236 NLFSHNAPVLENGYNEEEMKMVKETRKI 263
N H +E+G +EE KM ET+KI
Sbjct: 195 NCIPHIDVFMEDGSTKEEWKMAVETKKI 222
|
|
| TIGR_CMR|SO_3070 SO_3070 "aspartate semialdehyde dehydrogenese" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 84/212 (39%), Positives = 130/212 (61%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
Q + +L +R+FP ++ LAS RSAG+ +SF K T+ ++ + + FSAGG
Sbjct: 18 QTMIEILEERNFPVANLYPLASSRSAGETVSFHGKQITILDVETFDWSQAQLGFFSAGGD 77
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
+S K+ PIA E G +V+DN+S FR ++PLV+PEVNP A++ + +IANPNCS
Sbjct: 78 VSAKWAPIAAEAGCVVIDNTSHFRYDIDIPLVVPEVNPHAIADFR----NRNIIANPNCS 133
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQ 232
TI L+A P++ ++R+ V+TYQ +EEL Q ++L+G P +++ +Q
Sbjct: 134 TIQMLVALKPIYDTYGISRINVATYQSVSGTGKKAIEELARQCTKLLQGLPAEAEVYPKQ 193
Query: 233 YAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
AFN+ ++NGY +EEMKMV ET+KI+
Sbjct: 194 IAFNVLPQIDKFMDNGYTKEEMKMVWETQKIF 225
|
|
| TIGR_CMR|CJE_1167 CJE_1167 "aspartate-semialdehyde dehydrogenase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 97/218 (44%), Positives = 134/218 (61%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSAG 110
+E L+VL + DFP SI LAS +S G ++ F+ KAY V+ELTE+ F + +DIA FSAG
Sbjct: 18 EELLNVLDELDFPVESILPLASAKSVGSEVEFKGKAYKVKELTENVFKENPIDIAFFSAG 77
Query: 111 GSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170
GS+S+K+ AVE G+IV+DN+S FRM ++VPLV+PE NPE + K K +IANPN
Sbjct: 78 GSVSEKYAKFAVESGAIVIDNTSHFRMEKDVPLVVPECNPEDIKDWK----KTGIIANPN 133
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEEL--ELQTR---EVLEGKPPT 225
CSTI + PL+ + R+ VSTYQ M+EL +Q+ ++ E +P T
Sbjct: 134 CSTIQMVQVLKPLNDAFNLKRVDVSTYQAASGAGKEGMQELVEAMQSFFAFKLDEFEPQT 193
Query: 226 CKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
F A NL ++N Y +EE+KMV ET+KI
Sbjct: 194 ---FPYTLALNLIPQIDVFMDNDYTKEELKMVNETQKI 228
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O67716 | DHAS_AQUAE | 1, ., 2, ., 1, ., 1, 1 | 0.5267 | 0.7813 | 0.6411 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.00100987 | aspartate semialdehyde dehydrogenase (EC-1.2.1.11) (375 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.XIV.3082.1 | aspartate kinase (EC-2.7.2.4) (487 aa) | • | • | • | • | 0.989 | |||||
| gw1.II.423.1 | aspartate kinase (EC-2.7.2.4) (486 aa) | • | • | • | • | 0.988 | |||||
| grail3.0035005702 | dihydrodipicolinate synthase (EC-4.2.1.52) (363 aa) | • | • | • | 0.982 | ||||||
| estExt_fgenesh4_pg.C_LG_II1351 | dihydrodipicolinate synthase (EC-4.2.1.52) (366 aa) | • | • | • | 0.979 | ||||||
| fgenesh4_pg.C_LG_XIX000654 | hypothetical protein (829 aa) | • | • | 0.921 | |||||||
| gw1.41.659.1 | hypothetical protein (843 aa) | • | • | 0.919 | |||||||
| gw1.8576.1.1 | Predicted protein (207 aa) | • | • | 0.900 | |||||||
| eugene3.31480002 | Predicted protein (222 aa) | • | • | • | 0.730 | ||||||
| gw1.XVI.3802.1 | diaminopimelate epimerase (EC-5.1.1.7) (281 aa) | • | • | 0.729 | |||||||
| eugene3.00090483 | diaminopimelate decarboxylase (EC-4.1.1.20) (482 aa) | • | • | 0.699 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 279 | |||
| PLN02383 | 344 | PLN02383, PLN02383, aspartate semialdehyde dehydro | 1e-168 | |
| PRK14874 | 334 | PRK14874, PRK14874, aspartate-semialdehyde dehydro | 1e-115 | |
| COG0136 | 334 | COG0136, Asd, Aspartate-semialdehyde dehydrogenase | 2e-90 | |
| TIGR01296 | 338 | TIGR01296, asd_B, aspartate-semialdehyde dehydroge | 2e-84 | |
| PRK06728 | 347 | PRK06728, PRK06728, aspartate-semialdehyde dehydro | 4e-50 | |
| PRK08664 | 349 | PRK08664, PRK08664, aspartate-semialdehyde dehydro | 1e-42 | |
| PRK08040 | 336 | PRK08040, PRK08040, putative semialdehyde dehydrog | 9e-41 | |
| pfam01118 | 121 | pfam01118, Semialdhyde_dh, Semialdehyde dehydrogen | 2e-40 | |
| PRK05671 | 336 | PRK05671, PRK05671, aspartate-semialdehyde dehydro | 3e-37 | |
| smart00859 | 123 | smart00859, Semialdhyde_dh, Semialdehyde dehydroge | 4e-35 | |
| TIGR00978 | 341 | TIGR00978, asd_EA, aspartate-semialdehyde dehydrog | 4e-32 | |
| TIGR01745 | 366 | TIGR01745, asd_gamma, aspartate-semialdehyde dehyd | 7e-12 | |
| PRK06598 | 369 | PRK06598, PRK06598, aspartate-semialdehyde dehydro | 8e-11 | |
| PRK00436 | 343 | PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate | 3e-10 | |
| pfam02774 | 167 | pfam02774, Semialdhyde_dhC, Semialdehyde dehydroge | 7e-09 | |
| COG0002 | 349 | COG0002, ArgC, Acetylglutamate semialdehyde dehydr | 3e-08 | |
| TIGR01850 | 346 | TIGR01850, argC, N-acetyl-gamma-glutamyl-phosphate | 6e-08 | |
| PRK06901 | 322 | PRK06901, PRK06901, aspartate-semialdehyde dehydro | 4e-07 | |
| PLN02968 | 381 | PLN02968, PLN02968, Probable N-acetyl-gamma-glutam | 8e-05 |
| >gnl|CDD|178009 PLN02383, PLN02383, aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 469 bits (1208), Expect = e-168
Identities = 197/232 (84%), Positives = 214/232 (92%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE 92
M+ E+ PSVA+VGVTGAVGQEFLSVL+DRDFPY S+KMLAS RSAGK+++F+ + YTVE
Sbjct: 1 MALTENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVE 60
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
ELTEDSFDGVDIALFSAGGSISKKFGPIAV+KG++VVDNSSAFRM E VPLVIPEVNPEA
Sbjct: 61 ELTEDSFDGVDIALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEA 120
Query: 153 MSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELE 212
M IK+G GKGALIANPNCSTIICLMA TPLHR AKV RMVVSTYQAASGAGAAAMEELE
Sbjct: 121 MKHIKLGKGKGALIANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELE 180
Query: 213 LQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
QTREVLEGKPPTC IF+QQYAFNLFSHNAP+ ENGYNEEEMK+VKETRKIW
Sbjct: 181 QQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYNEEEMKLVKETRKIW 232
|
Length = 344 |
| >gnl|CDD|237845 PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 334 bits (858), Expect = e-115
Identities = 128/224 (57%), Positives = 161/224 (71%), Gaps = 6/224 (2%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TGAVG+E L++L +R+FP +++LAS RSAGK+LSF+ K VE+LT F G
Sbjct: 4 VAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSG 63
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
VDIALFSAGGS+SKK+ P A G++V+DNSSAFRM +VPLV+PEVNPEA++ +
Sbjct: 64 VDIALFSAGGSVSKKYAPKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHR---K 120
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
KG +IANPNCSTI ++A PLH A + R+VVSTYQA SGAG A MEEL QTR VL
Sbjct: 121 KG-IIANPNCSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNA 179
Query: 222 K--PPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
P K F + AFN+ H +++GY +EEMKMV ET+KI
Sbjct: 180 AVDPVEPKKFPKPIAFNVIPHIDVFMDDGYTKEEMKMVNETKKI 223
|
Length = 334 |
| >gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 271 bits (694), Expect = 2e-90
Identities = 112/226 (49%), Positives = 141/226 (62%), Gaps = 8/226 (3%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEELTEDSFD 100
VAV+G TGAVGQ L +L +R FP+ + +LAS RSAGK+ + F K+ V E D F
Sbjct: 4 VAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFV 63
Query: 101 --GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158
VDI F+AGGS+SK+ P A E G +V+DNSSAFRM +VPLV+PEVNPE + +
Sbjct: 64 FSDVDIVFFAAGGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQ- 122
Query: 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREV 218
+G +IANPNCSTI ++A PLH + R+VVSTYQA SGAGA EL QT +
Sbjct: 123 --KRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDAL 180
Query: 219 LEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
L G P AFN+ H L+NGY +EE K+ ETRKI
Sbjct: 181 LNGIPILPI--GYPLAFNVIPHIDGFLDNGYTKEEWKIEAETRKIL 224
|
Length = 334 |
| >gnl|CDD|233347 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Score = 256 bits (655), Expect = 2e-84
Identities = 120/229 (52%), Positives = 154/229 (67%), Gaps = 10/229 (4%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
+VA+VG TGAVGQE L +L +R+FP + +LAS RSAG++L+F+ K VEE +SF+
Sbjct: 1 NVAIVGATGAVGQEMLKLLEERNFPIDKLVLLASARSAGRKLTFKGKELEVEEAETESFE 60
Query: 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGM 160
G+DIALFSAGGS+SK+F P A + G IV+DN+SAFRM +VPLV+PEVN E +
Sbjct: 61 GIDIALFSAGGSVSKEFAPKAAKAGVIVIDNTSAFRMDPDVPLVVPEVNFEDLKEFN--- 117
Query: 161 GKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLE 220
+IANPNCSTI ++ PLH AK+ R+VVSTYQA SGAG A +EEL QT+ VLE
Sbjct: 118 -PKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAVLE 176
Query: 221 GK------PPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
G P F Q AFN H +++GY +EE KM+ ETRKI
Sbjct: 177 GAEQLPYIQPKANKFPYQIAFNAIPHIDSFVDDGYTKEEQKMLFETRKI 225
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978 [Amino acid biosynthesis, Aspartate family]. Length = 338 |
| >gnl|CDD|136022 PRK06728, PRK06728, aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 4e-50
Identities = 95/235 (40%), Positives = 142/235 (60%), Gaps = 14/235 (5%)
Query: 37 ESAPSVAVVGVTGAVGQEFLSVL-SDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT 95
E VAVVG TGAVGQ+ + +L + F + +L+SKRSAGK + F+ + ++E
Sbjct: 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAK 62
Query: 96 EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155
+SF+GVDIA FSAGG +S++F AV G+IV+DN+S +RM +VPLV+PEVN +
Sbjct: 63 INSFEGVDIAFFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKE 122
Query: 156 IKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQT 215
K +IA PNCS + + A P+ + + R++VSTYQA SG+G A++EL+ Q
Sbjct: 123 HK------GIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQA 176
Query: 216 REVLEGKPPTCKIF-----SQQY--AFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
+ +L G+ I + Y AFN+ +N + EE+KM++ET+KI
Sbjct: 177 KSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKI 231
|
Length = 347 |
| >gnl|CDD|236329 PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 1e-42
Identities = 84/271 (30%), Positives = 123/271 (45%), Gaps = 75/271 (27%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQL--------------SFQD 86
V ++G TG VGQ F+ +L++ P+ + L AS+RSAGK D
Sbjct: 6 VGILGATGMVGQRFVQLLAN--HPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVAD 63
Query: 87 KAYTVEELTEDSFDGVDIALFSA-----GGSISKKFGPIAVEKGSIVVDNSSAFRMVENV 141
V ++ D VDI +FSA G + ++F + G V N+SA RM +V
Sbjct: 64 --MEVVSTDPEAVDDVDI-VFSALPSDVAGEVEEEF----AKAGKPVFSNASAHRMDPDV 116
Query: 142 PLVIPEVNPEAMSGIKV----GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTY 197
PLVIPEVNPE + I+V G ++ NPNCSTI ++A PL + R+ V+T
Sbjct: 117 PLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTIGLVLALKPL-MDFGIERVHVTTM 175
Query: 198 QAASGAG---AAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEM 254
QA SGAG +M+ ++ N+ + EEE
Sbjct: 176 QAISGAGYPGVPSMDIVD-----------------------NVIPY-------IGGEEE- 204
Query: 255 KMVKETRKIWVSFK------MNFFVSPCSCN 279
K+ KET KI F+ +F +S +C+
Sbjct: 205 KIEKETLKILGKFEGGKIVPADFPIS-ATCH 234
|
Length = 349 |
| >gnl|CDD|181205 PRK08040, PRK08040, putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 9e-41
Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 10/225 (4%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
++A++G TGAVG+ L +L++R FP + LAS+ SAG+ L F K+ TV++ E +
Sbjct: 6 NIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWS 65
Query: 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGM 160
+A F AG S + A G +V+D+S F + +VPLV+PEVNP ++ +
Sbjct: 66 QAQLAFFVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR--- 122
Query: 161 GKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLE 220
+IA + T L A PL +A ++R+ V+ +AS G AA++ L Q+ ++L
Sbjct: 123 -NRNIIAVADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLN 181
Query: 221 GKPPTCKIFSQQYAFNLFSHNAPVL--ENGYNEEEMKMVKETRKI 263
G P F +Q AFN+ P+L G EE ++V + RKI
Sbjct: 182 GIPIEEGFFGRQLAFNML----PLLPDSEGSVREERRLVDQVRKI 222
|
Length = 336 |
| >gnl|CDD|201603 pfam01118, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-40
Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 7/121 (5%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKA------YTVEELT 95
VA+VG TG VGQE L +L P + ++AS RSAGK+++F +E++
Sbjct: 2 VAIVGATGYVGQELLRLL-AEHPPLELVALVASSRSAGKKVAFAYPILEGGKDLLLEDVD 60
Query: 96 EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155
+ VDI + +SK+ P +E G++V+D SSAFRM ++VP V+PEVN EA+
Sbjct: 61 PEDLKDVDIVFLALPAGVSKELAPKLLEAGAVVIDLSSAFRMDDDVPYVLPEVNREAIKK 120
Query: 156 I 156
Sbjct: 121 A 121
|
This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase. Length = 121 |
| >gnl|CDD|168165 PRK05671, PRK05671, aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 3e-37
Identities = 73/222 (32%), Positives = 113/222 (50%), Gaps = 5/222 (2%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
+AVVG TG VG+ + +L +RDFP ++ +LAS SAG + F K V E+ F
Sbjct: 7 IAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQ 66
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
V +A F+AG ++S+ F A G V+D S A P V+PEVN E ++ +
Sbjct: 67 VQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALP-SAQAPNVVPEVNAERLASLA---- 121
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
L+++P+ S + +A PL + R+ V+ A S G + EL QT E+L
Sbjct: 122 APFLVSSPSASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNA 181
Query: 222 KPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
+P + F +Q AFNL + G+ E ++V E R++
Sbjct: 182 RPLEPRFFDRQVAFNLLAQVGAPDAQGHTALERRLVAELRQL 223
|
Length = 336 |
| >gnl|CDD|214863 smart00859, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 4e-35
Identities = 52/125 (41%), Positives = 70/125 (56%), Gaps = 11/125 (8%)
Query: 41 SVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSF---QDKAYTVEELTE 96
VA+VG TG VGQE L +L++ DF ++ AS RSAGK++S K V EL
Sbjct: 1 KVAIVGATGYVGQELLRLLAEHPDFELTAL--AASSRSAGKKVSEAGPHLKGEVVLELDP 58
Query: 97 DSFD--GVDIALFSAGGSISK---KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPE 151
F+ VDI + +SK P A G++V+D SSAFRM ++VP +PEVNPE
Sbjct: 59 PDFEELAVDIVFLALPHGVSKESAPLLPRAAAAGAVVIDLSSAFRMDDDVPYGLPEVNPE 118
Query: 152 AMSGI 156
A+
Sbjct: 119 AIKKA 123
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. Length = 123 |
| >gnl|CDD|233220 TIGR00978, asd_EA, aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-32
Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 22/181 (12%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSI-KMLASKRSAGKQL--------------SFQD 86
VAV+G TG VGQ+F+ +L+ PY + K++AS RSAGK+ +D
Sbjct: 3 VAVLGATGLVGQKFVKLLAKH--PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRD 60
Query: 87 KAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIP 146
+ E + D VDI + ++++ P E G V N+S RM +VPL+IP
Sbjct: 61 --LPIVEPEPIAEDDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIP 118
Query: 147 EVNPEAMSGIKV---GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGA 203
EVN + + +KV KG ++ NPNC+T +A PL + ++ V+T QA SGA
Sbjct: 119 EVNSDHLELLKVQKERGWKGFIVTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGA 178
Query: 204 G 204
G
Sbjct: 179 G 179
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan [Amino acid biosynthesis, Aspartate family]. Length = 341 |
| >gnl|CDD|130806 TIGR01745, asd_gamma, aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 7e-12
Identities = 65/252 (25%), Positives = 102/252 (40%), Gaps = 33/252 (13%)
Query: 42 VAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSF 99
V +VG G VG + + +RDF ++ + SF T+++ + D+
Sbjct: 3 VGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDAL 62
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157
+DI + GG + + P E G +D +S+ RM ++ +++ VN + I
Sbjct: 63 KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDV---IT 119
Query: 158 VGMGKGA-LIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQT- 215
G+ G NC+ + LM+ L V + V+TYQAASG GA M EL Q
Sbjct: 120 DGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMG 179
Query: 216 ---REVLE--GKPPTC------KIFSQQYAFNLFSHNAPV-------------LENGYNE 251
V + P + K+ + L N V L+NG +
Sbjct: 180 HLYGHVEDELATPSSAILDIERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSR 239
Query: 252 EEMKMVKETRKI 263
EE K ET KI
Sbjct: 240 EEWKGQAETNKI 251
|
[Amino acid biosynthesis, Aspartate family]. Length = 366 |
| >gnl|CDD|235839 PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 8e-11
Identities = 78/269 (28%), Positives = 105/269 (39%), Gaps = 67/269 (24%)
Query: 42 VAVVGVTGAVGQEFLSVLSDR-----DF----PY---RSIKMLASKRSAGKQLSFQDKAY 89
V VG G VG SVL R DF P S A+ GK+ + QD A+
Sbjct: 4 VGFVGWRGMVG----SVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQD-AF 58
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPE 147
++ L + +DI + GG + + P G +D +S RM ++ +++
Sbjct: 59 DIDALKK-----LDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDP 113
Query: 148 VNPEAMSGIKVGMGKGALIAN---PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAG 204
VN I + G + NC+ + LMA L + V + V TYQAASGAG
Sbjct: 114 VN---RDVIDDALANG--VKTFVGGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAG 168
Query: 205 AAAMEEL-------------ELQT---------REVLE----GKPPTCKIFSQQYAFNLF 238
A M EL EL R+V E G PT F A +L
Sbjct: 169 ARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDLPT-DNFGVPLAGSLI 227
Query: 239 SHNAP----VLENGYNEEEMKMVKETRKI 263
P L NG + EE K ET KI
Sbjct: 228 ----PWIDKDLGNGQSREEWKGQAETNKI 252
|
Length = 369 |
| >gnl|CDD|234761 PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 3e-10
Identities = 52/198 (26%), Positives = 78/198 (39%), Gaps = 44/198 (22%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS------FQDKAYTVEEL 94
V +VG +G G E L +L + P I + S+ SAGK LS +E L
Sbjct: 4 KVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPL 61
Query: 95 TEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMV-------------ENV 141
+ G D+ + +S P +E G V+D S+ FR+
Sbjct: 62 DPEILAGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAP 121
Query: 142 PLV------IPEVNPEAMSGIKVGMGKGA-LIANPNC---STIICLMAATPL--HRRAKV 189
L+ +PE+N E + KGA LIANP C ++++ L PL
Sbjct: 122 ELLKEAVYGLPELNREEI--------KGARLIANPGCYPTASLLALA---PLLKAGLIDP 170
Query: 190 TRMVVSTYQAASGAGAAA 207
+++ SGAG A
Sbjct: 171 DSIIIDAKSGVSGAGRKA 188
|
Length = 343 |
| >gnl|CDD|217222 pfam02774, Semialdhyde_dhC, Semialdehyde dehydrogenase, dimerisation domain | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-09
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 20/85 (23%)
Query: 182 PLH-RRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH 240
PL + R++V TYQA SGAG A +F A NL +
Sbjct: 3 PLRDALGGLERVIVDTYQAVSGAGKKAKPG-----------------VFGAPIADNLIPY 45
Query: 241 NAPVLENGYNE--EEMKMVKETRKI 263
NG E EE+KMV ET+KI
Sbjct: 46 IDGEEHNGTPETREELKMVNETKKI 70
|
This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase. Length = 167 |
| >gnl|CDD|223081 COG0002, ArgC, Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--------FQDKAYT 90
V +VG +G G E L +L+ P + +++S+ AGK +S D +
Sbjct: 2 MIKVGIVGASGYTGLELLRLLAGH--PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQ 59
Query: 91 VEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE--------NVP 142
+ + D D+ + +S + P +E G V+D S+ FR+ +
Sbjct: 60 TIDPEKIELDECDVVFLALPHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFT 119
Query: 143 LVIPEVNPEAMSGI------KVGMGKGA-LIANPNCSTIICLMAATPLHRRAKV----TR 191
PE+ +A+ G+ K+ +GA LIANP C ++A PL +A + +
Sbjct: 120 HAGPELLEDAVYGLPELHREKI---RGAKLIANPGCYPTAAILALAPL-VKAGLLDPDSP 175
Query: 192 MVVSTYQAASGAGAAA 207
+V SGAG A
Sbjct: 176 PIVDAKSGVSGAGRKA 191
|
Length = 349 |
| >gnl|CDD|233597 TIGR01850, argC, N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 6e-08
Identities = 51/196 (26%), Positives = 77/196 (39%), Gaps = 40/196 (20%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSF---QDKAYTVEELTED 97
VA+VG +G G E L +L + P I L +S+ SAGK +S + L
Sbjct: 3 VAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPI 60
Query: 98 SFD----GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRM---------------- 137
+ D+ + +S + P + G V+D S+ FR+
Sbjct: 61 DVEEILEDADVVFLALPHGVSAELAPELLAAGVKVIDLSADFRLKDPELYEKWYGFEHAG 120
Query: 138 ---VENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVTR 191
++ +PE++ E + KGA LIANP C L+A PL T
Sbjct: 121 PELLQKAVYGLPELHREEI--------KGARLIANPGCYPTATLLALAPLLKEGLIDPTS 172
Query: 192 MVVSTYQAASGAGAAA 207
++V SGAG A
Sbjct: 173 IIVDAKSGVSGAGRKA 188
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons [Amino acid biosynthesis, Glutamate family]. Length = 346 |
| >gnl|CDD|235883 PRK06901, PRK06901, aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-07
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 82 LSFQDKAYTVEELTEDSFDGVDIA-LFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN 140
+ F +KA VE++ + + D +F AG + A E G IV+D + N
Sbjct: 46 IRFNNKA--VEQIAPEEVEWADFNYVFFAGKMAQAEHLAQAAEAGCIVIDLYGICAALAN 103
Query: 141 VPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAA 200
VP+V+P VN E ++ ++ + +++ P+ +A P + ++++ V++ A
Sbjct: 104 VPVVVPSVNDEQLAELR----QRNIVSLPDPQVSQLALALAPFLQEQPLSQIFVTSLLPA 159
Query: 201 SGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247
S A +++L QT +L G P + Q+ AF++F NA LE
Sbjct: 160 SYTDAETVKKLAGQTARLLNGIPLDEE--EQRLAFDVFPANAQNLEL 204
|
Length = 322 |
| >gnl|CDD|215522 PLN02968, PLN02968, Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 52/236 (22%), Positives = 84/236 (35%), Gaps = 41/236 (17%)
Query: 2 ATFSSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSD 61
S + + + E + V+G +G G E +L++
Sbjct: 3 FADSVGSKGLAS--RASVTSSPQSVVSSASSSVKSEEKKRIFVLGASGYTGAEVRRLLAN 60
Query: 62 RDFPYRSIKMLASKRSAGKQ-------LSFQDKAYTVEELTEDSFDGVDIALF-----SA 109
P I ++ + R AG+ L QD V D F VD A+F
Sbjct: 61 H--PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDAD-FSDVD-AVFCCLPHGT 116
Query: 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGI----K 157
I K A+ K +VD S+ FR+ + P PE+ EA+ G+ +
Sbjct: 117 TQEIIK-----ALPKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQR 171
Query: 158 VGMGKGALIANPNC--STIICLMAATPLHRRA--KVTRMVVSTYQAASGAGAAAME 209
+ L+ANP C + I + PL + + +++ SGAG A E
Sbjct: 172 EEIKSARLVANPGCYPTGIQLPL--VPLVKAGLIEPDNIIIDAKSGVSGAGRGAKE 225
|
Length = 381 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 279 | |||
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 100.0 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 100.0 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 100.0 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 100.0 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 100.0 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 100.0 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 100.0 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 100.0 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 100.0 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 100.0 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 100.0 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 100.0 | |
| KOG4777 | 361 | consensus Aspartate-semialdehyde dehydrogenase [Am | 100.0 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 100.0 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 100.0 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 100.0 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 100.0 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 100.0 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 100.0 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 100.0 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 100.0 | |
| PLN03096 | 395 | glyceraldehyde-3-phosphate dehydrogenase A; Provis | 100.0 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 100.0 | |
| PRK15425 | 331 | gapA glyceraldehyde-3-phosphate dehydrogenase A; P | 100.0 | |
| TIGR01534 | 327 | GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, | 99.98 | |
| PLN02358 | 338 | glyceraldehyde-3-phosphate dehydrogenase | 99.97 | |
| PTZ00023 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 99.97 | |
| PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 99.97 | |
| PRK07403 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 99.96 | |
| PRK07729 | 343 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 99.96 | |
| KOG4354 | 340 | consensus N-acetyl-gamma-glutamyl-phosphate reduct | 99.95 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 99.95 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 99.94 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 99.93 | |
| PLN02237 | 442 | glyceraldehyde-3-phosphate dehydrogenase B | 99.93 | |
| PTZ00353 | 342 | glycosomal glyceraldehyde-3-phosphate dehydrogenas | 99.91 | |
| PRK08289 | 477 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 99.86 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 99.85 | |
| PF02774 | 184 | Semialdhyde_dhC: Semialdehyde dehydrogenase, dimer | 99.81 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 99.69 | |
| PTZ00434 | 361 | cytosolic glyceraldehyde 3-phosphate dehydrogenase | 99.68 | |
| COG0057 | 335 | GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt | 99.65 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 99.39 | |
| COG4569 | 310 | MhpF Acetaldehyde dehydrogenase (acetylating) [Sec | 99.3 | |
| PF00044 | 151 | Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, | 99.18 | |
| smart00846 | 149 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, | 99.02 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 98.51 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.36 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.29 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 98.25 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 98.24 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.15 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 98.08 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 98.05 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.98 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.95 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 97.9 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 97.87 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.81 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 97.77 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.75 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.64 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.62 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.56 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.54 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.54 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 97.53 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.53 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.5 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.49 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.47 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 97.46 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.46 | |
| KOG0657 | 285 | consensus Glyceraldehyde 3-phosphate dehydrogenase | 97.43 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.43 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.42 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 97.39 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 97.39 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 97.39 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 97.37 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.37 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.35 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 97.35 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 97.31 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 97.29 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 97.27 | |
| PLN02256 | 304 | arogenate dehydrogenase | 97.26 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.25 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 97.21 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 97.17 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.15 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.15 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 97.13 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.11 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 97.1 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.1 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 97.1 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 97.08 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 97.07 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 97.03 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 97.01 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 96.99 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 96.94 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.94 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.92 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 96.91 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 96.88 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.88 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.87 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.86 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 96.83 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 96.82 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 96.81 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 96.74 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.71 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 96.69 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 96.68 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.68 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.63 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 96.62 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 96.61 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.58 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 96.58 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 96.56 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 96.55 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.55 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.55 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.53 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.52 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.5 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 96.5 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 96.48 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 96.48 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.46 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 96.44 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 96.41 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 96.4 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.38 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 96.35 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 96.34 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.33 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 96.32 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.3 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 96.3 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 96.3 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 96.25 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.24 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 96.23 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.22 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.22 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 96.21 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 96.2 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.19 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.17 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.15 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.13 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.13 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.13 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.11 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.07 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 96.05 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 96.05 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.04 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 96.03 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 95.99 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 95.98 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 95.98 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.97 | |
| PLN00106 | 323 | malate dehydrogenase | 95.94 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.92 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 95.91 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.91 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 95.88 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.88 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 95.84 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 95.82 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.82 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 95.8 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.79 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.76 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 95.74 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.74 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 95.72 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 95.69 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.67 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.6 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 95.58 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 95.56 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.55 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 95.51 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 95.5 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.5 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 95.48 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 95.45 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 95.41 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 95.41 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 95.39 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.39 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 95.37 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 95.35 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 95.35 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 95.34 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.33 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 95.25 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 95.23 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.21 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 95.2 | |
| PLN02696 | 454 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | 95.18 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 95.18 | |
| COG3804 | 350 | Uncharacterized conserved protein related to dihyd | 95.16 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 95.16 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 95.16 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.14 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.12 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.11 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 95.1 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.09 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 95.07 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 95.06 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.05 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.02 | |
| PLN02700 | 377 | homoserine dehydrogenase family protein | 94.98 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 94.98 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 94.97 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 94.97 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 94.89 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.89 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 94.84 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 94.81 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 94.76 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.64 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 94.6 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 94.59 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 94.53 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 94.52 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 94.51 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 94.51 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 94.5 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 94.46 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.45 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 94.42 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 94.4 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 94.38 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 94.37 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 94.34 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 94.29 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 94.24 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 94.22 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 94.2 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 94.2 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.17 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 94.14 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 94.11 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.11 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.11 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 94.04 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 94.04 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 93.98 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 93.92 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.9 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 93.87 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 93.86 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 93.85 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 93.83 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 93.73 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 93.73 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 93.7 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.67 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 93.66 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.66 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 93.65 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.65 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 93.65 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 93.62 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 93.61 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 93.59 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.55 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 93.54 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 93.54 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 93.49 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 93.46 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 93.42 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.4 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 93.31 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 93.25 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 93.21 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 93.19 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 93.18 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 93.13 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 93.04 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 93.02 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 93.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 92.93 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 92.91 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.89 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.8 | |
| TIGR00243 | 389 | Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras | 92.79 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 92.78 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 92.77 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 92.69 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 92.69 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 92.64 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 92.59 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 92.59 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 92.55 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.54 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 92.53 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.49 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 92.47 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.45 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 92.45 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.45 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 92.43 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.3 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 92.29 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 92.23 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 92.2 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 92.16 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 92.15 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 92.12 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 92.09 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 92.07 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.05 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 92.04 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.03 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 92.02 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 91.92 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.9 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.89 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 91.83 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 91.79 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 91.78 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 91.77 | |
| KOG4777 | 361 | consensus Aspartate-semialdehyde dehydrogenase [Am | 91.75 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.74 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.74 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 91.73 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 91.7 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 91.69 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.68 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 91.67 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 91.63 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 91.6 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 91.59 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 91.56 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 91.54 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.54 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 91.52 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 91.46 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 91.44 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 91.43 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 91.38 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 91.35 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 91.31 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 91.28 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 91.25 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 91.2 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 91.19 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 91.13 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.12 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 91.12 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.1 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 91.06 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 91.04 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.04 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.03 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 91.02 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 91.01 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.98 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 90.98 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.98 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.97 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 90.95 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 90.93 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 90.77 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 90.73 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 90.7 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 90.67 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 90.67 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 90.65 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.6 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 90.5 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.46 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 90.36 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.33 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 90.22 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 90.19 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 90.18 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 90.16 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 90.16 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.15 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 90.01 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 89.93 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 89.92 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 89.89 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 89.88 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 89.8 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 89.77 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 89.76 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.75 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.71 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 89.65 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 89.57 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 89.56 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 89.54 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 89.54 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.5 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 89.47 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 89.41 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 89.39 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 89.37 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 89.37 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 89.36 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 89.35 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 89.32 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 89.31 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 89.29 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.1 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 89.1 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 89.06 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 89.05 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 89.01 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 89.0 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 88.92 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 88.86 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 88.85 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 88.74 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 88.69 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 88.62 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 88.56 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 88.49 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 88.43 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 88.4 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 88.35 | |
| PLN02928 | 347 | oxidoreductase family protein | 88.34 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 88.28 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 88.25 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 88.21 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 88.2 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 88.19 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 88.18 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 88.16 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 88.15 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 88.15 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 88.12 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 88.11 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.09 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 88.09 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 88.08 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 88.06 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 87.99 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 87.97 | |
| KOG2742 | 367 | consensus Predicted oxidoreductase [General functi | 87.92 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 87.88 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 87.82 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 87.77 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.72 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 87.72 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 87.64 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 87.58 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 87.56 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 87.51 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 87.51 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 87.5 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 87.48 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 87.32 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.29 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 87.29 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 87.26 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 87.23 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 87.22 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 87.17 | |
| PRK12464 | 383 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 87.16 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.11 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 87.08 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 87.0 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 86.99 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 86.94 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 86.89 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 86.83 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 86.82 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 86.78 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 86.74 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 86.73 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 86.72 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.67 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 86.53 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 86.47 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 86.42 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 86.4 | |
| PRK08223 | 287 | hypothetical protein; Validated | 86.4 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 86.3 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 86.27 | |
| COG0743 | 385 | Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras | 86.23 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 86.23 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 86.12 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 86.12 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 86.1 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 86.05 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 86.0 |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=483.31 Aligned_cols=230 Identities=40% Similarity=0.672 Sum_probs=216.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcC-CCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~-~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.+||||+|||||+|++|+++|++| +||..++..++|++++|+.+.+.+.++.++++++++|.++|+||+|+|+++++++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~~ 84 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQF 84 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHHH
Confidence 589999999999999999999965 4555558899999999999998877888888887778899999999999999999
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEe
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTY 197 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~ 197 (279)
++++.++|++|||+|++|||++++||++||||+++++. ..++||||||++++++++|+||+++++|++|+|+||
T Consensus 85 ~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~------~~~iIanPnC~tt~~~laL~PL~~~~~i~~v~V~t~ 158 (347)
T PRK06728 85 VNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKE------HKGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTY 158 (347)
T ss_pred HHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhc------cCCEEECCCCHHHHHHHHHHHHHHcCCccEEEEEEe
Confidence 99999999999999999999999999999999999983 236999999999999999999999999999999999
Q ss_pred ecccccChhhHHHHHHHHHHHhcCCCCCccccc-------cccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCcc
Q 023678 198 QAASGAGAAAMEELELQTREVLEGKPPTCKIFS-------QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 198 q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~-------~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~ 270 (279)
||+||||+++++||++||+.+++|++.++++|| +||+||+|||||.|+++||++||+|+++|+||||+++++.
T Consensus 159 qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~~g~t~EE~K~~~E~~KIL~~~~l~ 238 (347)
T PRK06728 159 QAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLK 238 (347)
T ss_pred ecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCccccCCccHHHHHHHHHHHHHhCCCCCc
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999888
Q ss_pred EEee
Q 023678 271 FFVS 274 (279)
Q Consensus 271 v~~~ 274 (279)
|+.|
T Consensus 239 Vsat 242 (347)
T PRK06728 239 MAAT 242 (347)
T ss_pred EEEE
Confidence 8766
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-63 Score=469.23 Aligned_cols=231 Identities=25% Similarity=0.331 Sum_probs=213.6
Q ss_pred CEEEEECcCcHHHHHHHHHHH-cCCCCceEEEEEeecCCCCceeeeCCceeEEeecCcc-CCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~-~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~-~~~~~DvVf~a~g~~~s~~~ 117 (279)
+||||+||||+||++++++|+ +++||..++++++|+++.|+.+.+.+....++++++. +|.++|+||||+|.++++++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~ 80 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI 80 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence 489999999999999999888 8889999999999999999999888777888888764 78999999999999999999
Q ss_pred HHHHHhCC--CEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcE--EECCCChHHHHHHhhhchhhhcCccEEE
Q 023678 118 GPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGAL--IANPNCSTIICLMAATPLHRRAKVTRMV 193 (279)
Q Consensus 118 ~~~~~~aG--~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~i--VanPgC~tt~l~laL~PL~~~~~i~~v~ 193 (279)
+++++++| |.|||+|++|||++|+|+++||||++.+.... +.++ |+||||+|++|+++|+||++.++|++|+
T Consensus 81 ~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~----~~gi~~ianPNCst~~l~~aL~pL~~~~~i~~v~ 156 (366)
T TIGR01745 81 YPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGL----NNGIRTFVGGNCTVSLMLMSLGGLFANDLVEWVS 156 (366)
T ss_pred HHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHH----hCCcCeEECcCHHHHHHHHHHHHHHhccCccEEE
Confidence 99999999 88999999999999999999999999887410 2456 8999999999999999999999999999
Q ss_pred EEEeecccccChhhHHHHHHHHHHHhc--------CC-----------------CCCccccccccccccccCCCCcccCC
Q 023678 194 VSTYQAASGAGAAAMEELELQTREVLE--------GK-----------------PPTCKIFSQQYAFNLFSHNAPVLENG 248 (279)
Q Consensus 194 vtt~q~vSGaG~~~~~El~~qt~~l~~--------g~-----------------~~~~~~f~~~iafN~iP~i~~~~~~g 248 (279)
|+|||++||||+++++||++||+.+++ ++ +.++.+||+||+||+|||||.|+++|
T Consensus 157 VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~fp~~iafNvIP~Ig~~~~~g 236 (366)
T TIGR01745 157 VATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNG 236 (366)
T ss_pred EEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhccccccccccCCCCcccCCCcccccccCcCCCccCCC
Confidence 999999999999999999999999877 44 67788999999999999999999999
Q ss_pred ChHHHHhHHHHHHHhcCC-CCccEEee
Q 023678 249 YNEEEMKMVKETRKIWVS-FKMNFFVS 274 (279)
Q Consensus 249 ~t~eE~k~~~E~~kil~~-~~~~v~~~ 274 (279)
||+||+|+++|+|||||+ +++.|+.|
T Consensus 237 ~t~EE~K~~~EtrKILg~~~~l~VsaT 263 (366)
T TIGR01745 237 QSREEWKGQAETNKILGTSSTIPVDGL 263 (366)
T ss_pred CcHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence 999999999999999998 88887666
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=470.05 Aligned_cols=234 Identities=26% Similarity=0.314 Sum_probs=207.6
Q ss_pred CCEEEEECcCcHHHHHHHH-HHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-ccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~-lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~ 116 (279)
|++|||+|||||||++|++ +|++++||..+++.++++++.|+...+.+....+.+.. +++|.++|+||||+|++++++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~~ 80 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTNE 80 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHHH
Confidence 3799999999999999998 66666777777999877777777667777666666644 567889999999999999999
Q ss_pred hHHHHHhCC--CEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEE
Q 023678 117 FGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (279)
Q Consensus 117 ~~~~~~~aG--~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~v 194 (279)
++++++++| |.|||+|++|||++++||++||||+++++.... .+.++||||||++++++++|+||++.++|++|+|
T Consensus 81 ~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~--~g~~iIanPnC~tt~~~laL~PL~~~~~i~~viV 158 (369)
T PRK06598 81 VYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALA--NGVKTFVGGNCTVSLMLMALGGLFKNDLVEWVSV 158 (369)
T ss_pred HHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhh--cCCCEEEcCChHHHHHHHHHHHHHhcCCceEEEE
Confidence 999999999 679999999999999999999999999974100 0125899999999999999999999999999999
Q ss_pred EEeecccccChhhHHHHHHHHHHHhc-------------------------CCCCCccccccccccccccCCCCcccCCC
Q 023678 195 STYQAASGAGAAAMEELELQTREVLE-------------------------GKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 195 tt~q~vSGaG~~~~~El~~qt~~l~~-------------------------g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
+||||+||||+++++||++||+.+++ |++.++++||+||+||+|||||.|+++||
T Consensus 159 st~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~iafN~iP~I~~~~~~g~ 238 (369)
T PRK06598 159 MTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDLPTDNFGVPLAGSLIPWIDKDLGNGQ 238 (369)
T ss_pred EeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCCCcccCCCcccccccCcCCCcccCCc
Confidence 99999999999999999999999866 78889999999999999999999999999
Q ss_pred hHHHHhHHHHHHHhcCC--CCccEEee
Q 023678 250 NEEEMKMVKETRKIWVS--FKMNFFVS 274 (279)
Q Consensus 250 t~eE~k~~~E~~kil~~--~~~~v~~~ 274 (279)
|+||+|+++|+|||||. +++.|+.|
T Consensus 239 t~EE~K~~~EtrKIL~~~~~~l~vs~t 265 (369)
T PRK06598 239 SREEWKGQAETNKILGLTKNPIPVDGL 265 (369)
T ss_pred hHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 99999999999999997 77887666
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=456.80 Aligned_cols=231 Identities=49% Similarity=0.718 Sum_probs=212.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce-eeeCCceeEEee--cCccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEE--LTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~-~~~~~~~~~v~~--~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
++||||+||||.||++++++|++++||..++.+++|.|++|+. ..|.+..+.+.+ .+..+|+++|+||||+|.++++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~ 80 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSK 80 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHH
Confidence 4799999999999999999999987777778899999999998 777776666666 5566788999999999999999
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCC-cEEECCCChHHHHHHhhhchhhhcCccEEEE
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKG-ALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~-~iVanPgC~tt~l~laL~PL~~~~~i~~v~v 194 (279)
+++++++++||.|||+||+|||++|+|++|||||++++.... +. +||+||||+|++|+++|+||+++++|++|+|
T Consensus 81 ~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~----~rg~IianpNCst~~l~~aL~PL~~~~~i~~v~V 156 (334)
T COG0136 81 EVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQ----KRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVV 156 (334)
T ss_pred HHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhh----hCCCEEECCChHHHHHHHHHHHHHhhcCceEEEE
Confidence 999999999999999999999999999999999999987542 23 4999999999999999999999999999999
Q ss_pred EEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 195 STYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 195 tt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
+|||++||||++++.||..|+..++++.++.+. ++|||||+||||+++++||||+||+|+.+|++||||++++.|+.|
T Consensus 157 sTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~--~~~iAfNviP~I~~~~~ng~t~EE~K~~~Et~KIlg~~~~~Vsat 234 (334)
T COG0136 157 STYQAVSGAGAEGGVELAGQTDALLNGIPILPI--GYPLAFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSAT 234 (334)
T ss_pred EEeehhhhcCccchhhHHHHHhhhccCcccccc--cccccccccccCCccccCCccHHHHHHHHHHHHHhCCCCCceEEE
Confidence 999999999999999999999999888887776 789999999999999999999999999999999999988888877
Q ss_pred ec
Q 023678 275 PC 276 (279)
Q Consensus 275 ~~ 276 (279)
|
T Consensus 235 -c 235 (334)
T COG0136 235 -C 235 (334)
T ss_pred -E
Confidence 5
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-61 Score=453.59 Aligned_cols=231 Identities=34% Similarity=0.514 Sum_probs=217.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+++||||+|||||+|++|+++|++|+||.+++..++|++++|+++.+.+.++.+++++..+|.++|+||+|+|+++++++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s~~~ 82 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREASAAY 82 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHHHHH
Confidence 45899999999999999999999988899999999999999999998777788887766677899999999999999999
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEe
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTY 197 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~ 197 (279)
++++.++|++|||+|++||+++++||++||||++.++.++ +.++|||||||+|+++++|+||++.++|++|+|+||
T Consensus 83 ~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~----~~~iIAnPgC~~t~~~laL~PL~~~~~i~~viV~t~ 158 (336)
T PRK08040 83 AEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR----NRNIIAVADSLTSQLLTAIKPLIDQAGLSRLHVTNL 158 (336)
T ss_pred HHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhhc----cCCEEECCCHHHHHHHHHHHHHHHhCCCeEEEEEee
Confidence 9999999999999999999999999999999997776543 578999999999999999999999999999999999
Q ss_pred ecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 198 QAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 198 q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
||+|||||++++||++||+.+++|++++++.|+.|++||++||||+ ++|++.||+|+..|++|+|+.+++.|+.|
T Consensus 159 qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~--~~g~~~~erh~~~Ei~kiL~~~~~~vs~t 233 (336)
T PRK08040 159 LSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPD--SEGSVREERRLVDQVRKILQDEGLPISVS 233 (336)
T ss_pred ccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCC--cCCcchHhhhhHHHHHHHhCCCCCeEEEE
Confidence 9999999999999999999999999999999999999999999998 99999999999999999998777887777
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=450.36 Aligned_cols=237 Identities=82% Similarity=1.223 Sum_probs=220.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+.+||+|+|||||+|++|+++|++++||.+++..++|++++|+.+.+.+.++.+.+++.+++.++|+||+|+|++.++++
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~ 85 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKF 85 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHH
Confidence 45899999999999999999999988999999999999999999988777777877776667889999999999999999
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEe
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTY 197 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~ 197 (279)
++++.++|++|||+|++|||++++||++||||++.++..+.|+.+.++|||||||+|+++++|+||+++++|++|+|+||
T Consensus 86 ~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIanPgC~~t~~~laL~PL~~~~~i~~vvv~t~ 165 (344)
T PLN02383 86 GPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIANPNCSTIICLMAVTPLHRHAKVKRMVVSTY 165 (344)
T ss_pred HHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEECCCcHHHHHHHHHHHHHHcCCeeEEEEEee
Confidence 99999999999999999999999999999999999986432222356999999999999999999999999999999999
Q ss_pred ecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 198 QAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 198 q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
||+|||||++++||.+||+.+++|+++.++.|+.+++||++||++.|+++|||+||+|++.|++|||+.+++.|+.|
T Consensus 166 ~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~g~~~~E~~~~~e~~kil~~~~~~v~~t 242 (344)
T PLN02383 166 QAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWNDDDVKVTAT 242 (344)
T ss_pred ecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccCCCChHHHHHHHHHHHHhCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888777
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=447.70 Aligned_cols=231 Identities=32% Similarity=0.516 Sum_probs=216.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|+||+|+|||||+|++|+|+|.+++||..+++.+.|++++|+.+.+.+.++.+.+.+.++|+++|+||+|+|++++++++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~~s~~~v 83 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAAVSRSFA 83 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHHHHHHHH
Confidence 48999999999999999999998888999999999999999999887777888877766678999999999999999999
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEee
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q 198 (279)
+++.++|++|||+|++||++ ++||++||||+++++.++ +.++|||||||+|+++++|+||++.+++++|+|+|||
T Consensus 84 ~~~~~~G~~VIDlS~~fR~~-~~pl~lPEvn~~~i~~~~----~~~iIAnPgC~~t~~~laL~PL~~~~~~~~v~v~t~~ 158 (336)
T PRK05671 84 EKARAAGCSVIDLSGALPSA-QAPNVVPEVNAERLASLA----APFLVSSPSASAVALAVALAPLKGLLDIQRVQVTACL 158 (336)
T ss_pred HHHHHCCCeEEECchhhcCC-CCCEEecccCHHHHcccc----CCCEEECCCcHHHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 99999999999999999996 789999999999998543 4789999999999999999999988889999999999
Q ss_pred cccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 199 AASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 199 ~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
|+|||||++++||+.|+..++|+++.+++.||+||+||++||+|+|.++|||+||+|+..|++|||+.+++.|+.|
T Consensus 159 ~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~eE~r~~~Ei~kiL~~~~~~v~~t 234 (336)
T PRK05671 159 AVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTALERRLVAELRQLLGLPELKISVT 234 (336)
T ss_pred cCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCccHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 9999999999999999999889999999999999999999999999999999999999999999999887777766
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=429.01 Aligned_cols=217 Identities=22% Similarity=0.350 Sum_probs=202.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec-CCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~-~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
|.+++||| ||||.||++++++|++|+||.-++.+++++ +++|+.+.|.++++.+++++.++|.++|++|| +|.++++
T Consensus 1 ~~~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f~~vDia~f-ag~~~s~ 78 (322)
T PRK06901 1 MATLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEWADFNYVFF-AGKMAQA 78 (322)
T ss_pred CCcceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCcccCCEEEE-cCHHHHH
Confidence 34689999 999999999999999999999999999999 99999999999999999999889999999999 9999999
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEE
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVS 195 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vt 195 (279)
+|++.+.++||.|||||++|||++|+||++||||+++++.++ +.+||+||||+|++++++|+||++.++|++++|+
T Consensus 79 ~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~----~~~IIanPNCsTi~l~~aL~pL~~~~~l~rv~Vs 154 (322)
T PRK06901 79 EHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAELR----QRNIVSLPDPQVSQLALALAPFLQEQPLSQIFVT 154 (322)
T ss_pred HHHHHHHHCCCEEEECChHhhCCCCCCeecccCCHHHHhcCc----CCCEEECCcHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 999999999999999999999999999999999999998542 3579999999999999999999999999999999
Q ss_pred EeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCc-cEEee
Q 023678 196 TYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKM-NFFVS 274 (279)
Q Consensus 196 t~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~-~v~~~ 274 (279)
|||++||+|++|++||++||+.++||++.++.. +||+||+|||||. +|++|+|||| +++ +|+.|
T Consensus 155 TyQavSGaG~~gv~eL~~qt~~~~n~~~~~~~~--~~iAFNviP~ig~-----------~m~~EtrKIl--~~l~~VsaT 219 (322)
T PRK06901 155 SLLPASYTDAETVKKLAGQTARLLNGIPLDEEE--QRLAFDVFPANAQ-----------NLELQLQKIF--PQLENVTFH 219 (322)
T ss_pred eecchhhcCHhHHHHHHHHHHHHhCCCCCCCCc--eeeeccccccCCc-----------cHHHHHHHHh--CCcccEEEE
Confidence 999999999999999999999999998876654 8999999999993 2999999999 667 66655
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-55 Score=409.41 Aligned_cols=232 Identities=55% Similarity=0.820 Sum_probs=212.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
++||+|+|||||+|++|+++|.+|+||.+++++++++++.|+.+.+.+.++.+.+++..+|.++|+||+|+|++.+++++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~ 80 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYA 80 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHH
Confidence 47999999999999999999999999999999999999999988876667777776655678999999999999999999
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEee
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q 198 (279)
++++++|++|||+|++||+++++||++||||++.++... +.++|||||||+|+++++|+||+++++|++++|+|||
T Consensus 81 ~~~~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~----~~~iVanp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~ 156 (334)
T PRK14874 81 PKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHR----KKGIIANPNCSTIQMVVALKPLHDAAGIKRVVVSTYQ 156 (334)
T ss_pred HHHHhCCCEEEECCchhhcCCCCCeEcCCcCHHHHhhhh----cCCeEECccHHHHHHHHHHHHHHHhcCceEEEEEEEe
Confidence 999999999999999999998999999999999997410 1379999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHHHHHHHhc--CCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 199 AASGAGAAAMEELELQTREVLE--GKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 199 ~vSGaG~~~~~El~~qt~~l~~--g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
|+|||||++++|+..|+...++ +++.++..|+++++||++||+|+++++|++.||+|++.|++|||+.+++.|+.+
T Consensus 157 ~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~eE~ki~~el~~il~~~~~~v~~t 234 (334)
T PRK14874 157 AVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYTKEEMKMVNETKKILGDPDLKVSAT 234 (334)
T ss_pred chhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCcHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 9999999999999999999986 555667789999999999999999999999999999999999998788877666
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=409.44 Aligned_cols=230 Identities=51% Similarity=0.770 Sum_probs=213.1
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHHH
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~~ 120 (279)
||+|+|||||+|++|+++|.+|+||.++++.+++.+++|+.+.+.+.++.+.+++.+++.++|+||+|+|++.+++++++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a~~ 80 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFAPK 80 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHHHH
Confidence 68999999999999999999989999999999999999999988777777888776677899999999999999999999
Q ss_pred HHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEeecc
Q 023678 121 AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAA 200 (279)
Q Consensus 121 ~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~v 200 (279)
++++|++|||+|++||+++++||++||||++.++.-. ..++|||||||+++++++|+||++.++|++++|+||||+
T Consensus 81 ~~~~G~~VID~ss~~R~~~~~p~~vpevN~~~i~~~~----~~~iianp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~v 156 (339)
T TIGR01296 81 AAKCGAIVIDNTSAFRMDPDVPLVVPEVNLEDLKEFN----TKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAV 156 (339)
T ss_pred HHHCCCEEEECCHHHhCCCCCCEEeCCcCHHHHhhCc----cCCEEECCCcHHHHHHHHHHHHHHhcCccEEEEEeeech
Confidence 9999999999999999998999999999999997410 245999999999999999999999999999999999999
Q ss_pred cccChhhHHHHHHHHHHHhcCCCCCc-------cccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEe
Q 023678 201 SGAGAAAMEELELQTREVLEGKPPTC-------KIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFV 273 (279)
Q Consensus 201 SGaG~~~~~El~~qt~~l~~g~~~~~-------~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~ 273 (279)
||+|+++++||++|++.++++...+. ..|+++++||+|||++++++++++.||+|+..|++||+|.++++|+.
T Consensus 157 SgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~~~~~~Ee~ki~~el~~i~~~~~~~v~~ 236 (339)
T TIGR01296 157 SGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFNDDGYTKEETKMLFETRKIMGIPDFKVSA 236 (339)
T ss_pred hhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCcccCCCCHHHHHHHHHHHHHhCCCCCcEEE
Confidence 99999999999999999998776665 78999999999999999999999999999999999999877788777
Q ss_pred e
Q 023678 274 S 274 (279)
Q Consensus 274 ~ 274 (279)
+
T Consensus 237 t 237 (339)
T TIGR01296 237 T 237 (339)
T ss_pred E
Confidence 7
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=331.95 Aligned_cols=203 Identities=25% Similarity=0.412 Sum_probs=168.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE-eecCCCCceee--eC---Cc-eeEEeecCccCC-CCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLS--FQ---DK-AYTVEELTEDSF-DGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l-~s~~s~G~~~~--~~---~~-~~~v~~~d~~~~-~~~DvVf~a~g~ 111 (279)
+||+|+|||||+|++++++|.+| |.++++.+ .|+++.|+.+. +. +. ...+.+.+.+++ .++|+||+|+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCc
Confidence 58999999999999999999987 99999965 67778888665 22 11 334554444444 489999999999
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCCCCCC-------------------CCceeeccCCHHhhhccccCCCCCcEEECCCCh
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAFRMVE-------------------NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~R~~~-------------------~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~ 172 (279)
+.+++++++++++|++|||+|++||+++ ++||++||+|++.++ +.++|||||||
T Consensus 79 ~~s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~-------~~~iianPgC~ 151 (346)
T TIGR01850 79 GVSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIK-------GARLIANPGCY 151 (346)
T ss_pred hHHHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhC-------CCcEEEcCCcH
Confidence 9999999999999999999999999997 689999999999987 57899999999
Q ss_pred HHHHHHhhhchhhhcCcc--EEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCCh
Q 023678 173 TIICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (279)
Q Consensus 173 tt~l~laL~PL~~~~~i~--~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t 250 (279)
+|+++++|+||++.++|+ +|+|+||||+|||||++++++..++. + .++| .+|++||. +
T Consensus 152 ~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~---~-----~~~~----~y~~~~h~-------h- 211 (346)
T TIGR01850 152 PTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPEV---N-----ENLR----PYKVTGHR-------H- 211 (346)
T ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccchhh---c-----CCee----eeccCCcC-------c-
Confidence 999999999999998886 79999999999999999999876554 1 1233 34777765 3
Q ss_pred HHHHhHHHHHHHhcCCCCccEEee
Q 023678 251 EEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 251 ~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
+..+++|++|+++ +++.|+.|
T Consensus 212 --~~Ei~~~l~~~~~-~~~~v~ft 232 (346)
T TIGR01850 212 --TPEIEQELGRLAG-GKVKVSFT 232 (346)
T ss_pred --HHHHHHHHHHhcC-CCCCEEEE
Confidence 3349999999997 56777766
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=323.63 Aligned_cols=212 Identities=24% Similarity=0.384 Sum_probs=176.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCc------eeEEeecCccC--CCCCcEEEecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK------AYTVEELTEDS--FDGVDIALFSA 109 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~------~~~v~~~d~~~--~~~~DvVf~a~ 109 (279)
+|+||+|+|||||+|.||+|+|.+| |.+++..+.|++.+|+++..... ++.++.++++. ..++|+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~H--p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGH--PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLAL 78 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcC--CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEec
Confidence 3689999999999999999999998 99998888888889998774222 23444444333 35699999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcCCCCCCC-------------------CCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMV-------------------ENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS~~~R~~-------------------~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
|+++|+++++++.+.|++|||+|+|||++ +++.|++||+|+++|+ ++++|||||
T Consensus 79 Phg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~-------~A~lIAnPG 151 (349)
T COG0002 79 PHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIR-------GAKLIANPG 151 (349)
T ss_pred CchhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHh-------cCCEeeCCC
Confidence 99999999999999999999999999998 5678999999999998 689999999
Q ss_pred ChHHHHHHhhhchhhhcCc--cE-EEEEEeecccccChhhH-----------------------HHHHHHHHHHhcCCCC
Q 023678 171 CSTIICLMAATPLHRRAKV--TR-MVVSTYQAASGAGAAAM-----------------------EELELQTREVLEGKPP 224 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i--~~-v~vtt~q~vSGaG~~~~-----------------------~El~~qt~~l~~g~~~ 224 (279)
||+|+.+|+|+||.++..| +. ++|++++|+|||||++. +|++|+++.+. ++..
T Consensus 152 CypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~~e~~~~~~~Y~~~~HrH~pEi~q~l~~l~-~~~~ 230 (349)
T COG0002 152 CYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHFPEVNDSLRPYGLTGHRHTPEIEQHLGRLA-GRKV 230 (349)
T ss_pred chHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccchhhccccccccccccCchHHHHHHhhhcc-cCcC
Confidence 9999999999999998765 44 69999999999999983 99999999884 3322
Q ss_pred CccccccccccccccCCCCcccCCChHHHH-hHHHHHHHhc
Q 023678 225 TCKIFSQQYAFNLFSHNAPVLENGYNEEEM-KMVKETRKIW 264 (279)
Q Consensus 225 ~~~~f~~~iafN~iP~i~~~~~~g~t~eE~-k~~~E~~kil 264 (279)
+.+|.++++|+.+|++.+.|..-+. -...|+++++
T Consensus 231 -----~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y 266 (349)
T COG0002 231 -----PVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAY 266 (349)
T ss_pred -----ceEEecccccccceEEEEEEEecCCCCCHHHHHHHH
Confidence 2358899999999999998865443 1344555554
|
|
| >KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=313.51 Aligned_cols=227 Identities=52% Similarity=0.744 Sum_probs=208.1
Q ss_pred CEEE-EECcCcHHHHHHHHHHHcCCCCceEEEEE-eecCCCCceeeeCC------------ceeEEeecCccCCCCCcEE
Q 023678 40 PSVA-VVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQD------------KAYTVEELTEDSFDGVDIA 105 (279)
Q Consensus 40 ~kVa-IiGATG~VG~eLl~lL~~~~~p~~~l~~l-~s~~s~G~~~~~~~------------~~~~v~~~d~~~~~~~DvV 105 (279)
.|+| |+||||.||++++.+|.+| |++++..+ +|.|++|+++.+.+ .++.+.+.+.+.|.+||+|
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdh--P~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~ecDIv 81 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDH--PYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNECDIV 81 (361)
T ss_pred ccccceeeccchhHHHHHHHhccC--CcceeeeecccccccCCceEecccchhcccccchhhhhhHhhcChhhcccccEE
Confidence 4666 9999999999999999988 99999988 89999999998743 2455666677789999999
Q ss_pred EecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccC-----CCCCcEEECCCChHHHHHHhh
Q 023678 106 LFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG-----MGKGALIANPNCSTIICLMAA 180 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~-----~~~~~iVanPgC~tt~l~laL 180 (279)
|+.++.+.+.++.+.+.++|..|||++..||+.+++||++||||+|+++.++.| ..+..||+||||+|..++++|
T Consensus 82 fsgldad~ageiek~f~eag~iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~~v~pl 161 (361)
T KOG4777|consen 82 FSGLDADIAGEIEKLFAEAGTIIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAICVMPL 161 (361)
T ss_pred EecCCchhhhhhhHHHHhcCeEEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCceEEecCCCCeeeEEeec
Confidence 999999999999999999999999999999999999999999999999877655 235789999999999999999
Q ss_pred hchhhhc-CccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHH
Q 023678 181 TPLHRRA-KVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKE 259 (279)
Q Consensus 181 ~PL~~~~-~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E 259 (279)
+||+.+| .|++.+++|||++||||.++..|+.+++..++.|.+-+.+.|..+.++|+.|+...+..++|++||++.+.+
T Consensus 162 kpL~~~fgpi~~~~v~t~QAiSGAG~apgv~~vdildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ee~~vsaqc 241 (361)
T KOG4777|consen 162 KPLHHHFGPIKRMVVSTYQAISGAGAAPGVELVDILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLNEEEMVSAQC 241 (361)
T ss_pred hhHHhhccchhhhhhhhhhhhccCCcCCCchHHHHHHhhcCCCCccchhhhHHHHHhhhccCCccccccccHHHhhhhhc
Confidence 9999998 689999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred HHHhcCCCC
Q 023678 260 TRKIWVSFK 268 (279)
Q Consensus 260 ~~kil~~~~ 268 (279)
.|++..+-.
T Consensus 242 nRv~v~Dgh 250 (361)
T KOG4777|consen 242 NRVIVNDGH 250 (361)
T ss_pred ceeeEecCc
Confidence 999997643
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=325.07 Aligned_cols=203 Identities=21% Similarity=0.308 Sum_probs=166.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCC-----ce-eEEeecCccCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD-----KA-YTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~-----~~-~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
+++||+|+|||||+|++|+++|++| |.+++..+++++++|+.+.+.+ .+ ..+.+++.+++.++|+||+|+|+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h--P~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~ 114 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH--PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH 114 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC--CCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH
Confidence 4579999999999999999999999 9999999999889998766432 12 22444444456889999999999
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCCCCCCC--------Cc-----------eeeccCCHHhhhccccCCCCCcEEECCCCh
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAFRMVEN--------VP-----------LVIPEVNPEAMSGIKVGMGKGALIANPNCS 172 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~R~~~~--------vp-----------lvvPevN~~~i~~~~~~~~~~~iVanPgC~ 172 (279)
+.++++++.+ ++|++|||+|++||++++ +| |++||+|++.++ +.++|||||||
T Consensus 115 ~~s~~i~~~~-~~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r~~i~-------~~~iIAnPgC~ 186 (381)
T PLN02968 115 GTTQEIIKAL-PKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIK-------SARLVANPGCY 186 (381)
T ss_pred HHHHHHHHHH-hCCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCHHHhc-------CCCEEECCCCH
Confidence 9999999996 789999999999999987 56 566666666665 57899999999
Q ss_pred HHHHHHhhhchhhhcCc--cEEEEEEeecccccChhhHHH-HHHHHHHHhcCCCCCccccccccccccccCCCCcccCCC
Q 023678 173 TIICLMAATPLHRRAKV--TRMVVSTYQAASGAGAAAMEE-LELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 173 tt~l~laL~PL~~~~~i--~~v~vtt~q~vSGaG~~~~~E-l~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
+|+++++|+||++.++| ++++|+||||+|||||+++++ +..|+.. + + +++.+|..||++++
T Consensus 187 ~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~---------n-~-~~y~~~~h~h~pEi----- 250 (381)
T PLN02968 187 PTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAE---------G-I-GAYGVTRHRHVPEI----- 250 (381)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcc---------c-c-eeeccCCCCCcchH-----
Confidence 99999999999999999 689999999999999999999 7776663 1 1 46789999998752
Q ss_pred hHHHHhHHHHHHHhcCCCCccEEee
Q 023678 250 NEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 250 t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
| .++.++++ +++.|+.|
T Consensus 251 ---e----~~~~~~~~-~~~~v~ft 267 (381)
T PLN02968 251 ---E----QGLADAAG-SKVTPSFT 267 (381)
T ss_pred ---H----HHHHHHhC-CCCCEEEE
Confidence 3 33357776 46777766
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=316.34 Aligned_cols=202 Identities=15% Similarity=0.200 Sum_probs=160.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
++||||+|||||+|++|+|+|.+| |.+++..+.++... . + ..+.+.+.++|+||+|+|++++++++
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~h--p~~~l~~~~s~~~~--~-------~---~~~~~~~~~~DvvFlalp~~~s~~~~ 67 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGR--SDIELLSIPEAKRK--D-------A---AARRELLNAADVAILCLPDDAAREAV 67 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcC--CCeEEEEEecCCCC--c-------c---cCchhhhcCCCEEEECCCHHHHHHHH
Confidence 589999999999999999999999 99998888654322 1 1 11234567899999999999999999
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCcc---EEEEE
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVT---RMVVS 195 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~---~v~vt 195 (279)
+++.++|++|||+|++||+++++||++||+|++..+.++ +.++|||||||+|+++++|+||++...++ .++++
T Consensus 68 ~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~----~~~~IanPgC~~Ta~~laL~PL~~~~li~~~~~i~i~ 143 (313)
T PRK11863 68 ALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA----AAKRVANPGCYPTGAIALLRPLVDAGLLPADYPVSIN 143 (313)
T ss_pred HHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh----cCCeEEcCCcHHHHHHHHHHHHHHcCCcccCceEEEE
Confidence 999999999999999999999999999999876655443 57899999999999999999999987774 37899
Q ss_pred EeecccccChhhHHHHH----------------------HHHHHHhcCCCCCccccccccccccccCCCCcccCCChHH-
Q 023678 196 TYQAASGAGAAAMEELE----------------------LQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEE- 252 (279)
Q Consensus 196 t~q~vSGaG~~~~~El~----------------------~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~e- 252 (279)
+++|+|||||++++++. -++.+.+ |.- ....|.++++|+.+|++.+.|.+-
T Consensus 144 a~SG~SGAG~~~~~~~~~~~~~~~~n~~~Y~~~~~HrH~pEi~~~l-~~~-----~~~~F~Phl~p~~rGil~Ti~~~~~ 217 (313)
T PRK11863 144 AVSGYSGGGKAMIAAYEAAPDGKAPAFRLYGLGLAHKHLPEMQAHA-GLA-----RRPIFTPSVGNFRQGMLVTVPLHLR 217 (313)
T ss_pred EccccccCCccchHHHhhhhhhhccCeeeccCCcCCcchHHHHHHh-ccc-----cCcEEEeeEccccCcEEEEEEEEec
Confidence 99999999999988876 1111111 111 123478899999999999999773
Q ss_pred ---HHhHHHHHHHhc
Q 023678 253 ---EMKMVKETRKIW 264 (279)
Q Consensus 253 ---E~k~~~E~~kil 264 (279)
+.-...|++++|
T Consensus 218 ~~~~~~~~~~i~~~~ 232 (313)
T PRK11863 218 LLPGGPTAEDLHAAL 232 (313)
T ss_pred ccCCCCCHHHHHHHH
Confidence 222344555554
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=317.51 Aligned_cols=196 Identities=27% Similarity=0.419 Sum_probs=164.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC-----Cc-eeEEeecCccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-----DK-AYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~-----~~-~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
|+||+|+||||++|++++++|.++ |.++++.+.++++.|+.+... .. ...+.+++...+.++|+||+|+|++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG 79 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH
Confidence 479999999999999999999987 999999998877777755421 11 2345555433456899999999999
Q ss_pred hhhhhHHHHHhCCCEEEEcCCCCCCCC-C------------------CceeeccCCHHhhhccccCCCCCcEEECCCChH
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSAFRMVE-N------------------VPLVIPEVNPEAMSGIKVGMGKGALIANPNCST 173 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~~R~~~-~------------------vplvvPevN~~~i~~~~~~~~~~~iVanPgC~t 173 (279)
.+.+++++++++|+.|||+|++||+++ + ++|++||+|++.++ +.++||||||++
T Consensus 80 ~~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~-------~~~iIanPgC~~ 152 (343)
T PRK00436 80 VSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIK-------GARLIANPGCYP 152 (343)
T ss_pred HHHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhc-------CCCEEECCCCHH
Confidence 999999999999999999999999976 5 89999999999997 468999999999
Q ss_pred HHHHHhhhchhhhcCcc--EEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChH
Q 023678 174 IICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNE 251 (279)
Q Consensus 174 t~l~laL~PL~~~~~i~--~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~ 251 (279)
|+++++|+||++.++|+ +++|+||||+||||+++++++..++. + .++ ++||++|+. ++.
T Consensus 153 t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~---~-----~~~----~~y~~~~h~-------h~~ 213 (343)
T PRK00436 153 TASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEV---N-----ENL----RPYKVGGHR-------HTP 213 (343)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccchhh---c-----CCe----eecccCCCC-------CHH
Confidence 99999999999998887 89999999999999999999865544 1 122 378888886 333
Q ss_pred HHHhHHHHHHHhcC
Q 023678 252 EEMKMVKETRKIWV 265 (279)
Q Consensus 252 eE~k~~~E~~kil~ 265 (279)
| +.+|++|+++
T Consensus 214 E---i~~~l~~~~~ 224 (343)
T PRK00436 214 E---IEQELSALAG 224 (343)
T ss_pred H---HHHHHHHhcC
Confidence 3 8889999986
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=312.04 Aligned_cols=205 Identities=34% Similarity=0.472 Sum_probs=170.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE-eecCCCCceeeeC----------C--ceeEEeecCccCCCCCcEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQ----------D--KAYTVEELTEDSFDGVDIAL 106 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l-~s~~s~G~~~~~~----------~--~~~~v~~~d~~~~~~~DvVf 106 (279)
+||+|+||||++|++|+++|.+| |.+++..+ .++++.|+.+... + .++.+.+.+++.+.++|+||
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~--~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH--PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEE
Confidence 58999999999999999999988 88888877 4555677765410 1 23455565555567899999
Q ss_pred ecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhcc---ccCCCCCcEEECCCChHHHHHHhhhch
Q 023678 107 FSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGI---KVGMGKGALIANPNCSTIICLMAATPL 183 (279)
Q Consensus 107 ~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~---~~~~~~~~iVanPgC~tt~l~laL~PL 183 (279)
+|+|++++.++++++.++|++|||+|++||+++++|+++||+|.+.+... ++..++.++|||||||+|+++++|+||
T Consensus 79 ~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVanPgC~~t~~~lal~pL 158 (341)
T TIGR00978 79 SALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVTNPNCTTAGLTLALKPL 158 (341)
T ss_pred EeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEeCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865421 111125679999999999999999999
Q ss_pred hhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHh
Q 023678 184 HRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263 (279)
Q Consensus 184 ~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~ki 263 (279)
+++++|++++|+|+||+||||++++++ .++++|++||..+ +|.+...|++|+
T Consensus 159 ~~~~~i~~v~v~t~~gvSgaG~~~~~~--------------------~~~~~Ni~py~~~--------~ehrh~~Ei~~i 210 (341)
T TIGR00978 159 IDAFGIKKVHVTTMQAVSGAGYPGVPS--------------------MDILDNIIPHIGG--------EEEKIERETRKI 210 (341)
T ss_pred HHhCCCcEEEEEEEEccCCCCCCCCcc--------------------chhhCCeEecCcH--------HHHHHHHHHHHH
Confidence 999999999999999999999987641 1468999999986 889999999999
Q ss_pred cCCC--------CccEEee
Q 023678 264 WVSF--------KMNFFVS 274 (279)
Q Consensus 264 l~~~--------~~~v~~~ 274 (279)
|+.. ++.|+.+
T Consensus 211 l~~~~~~~~~~~~~~v~~t 229 (341)
T TIGR00978 211 LGKLENGKIEPAPFSVSAT 229 (341)
T ss_pred hCccccCcccCCCceEEEE
Confidence 9753 5666665
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=308.67 Aligned_cols=194 Identities=16% Similarity=0.244 Sum_probs=158.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.||+|+|||||+|.||+|+|.+| |++++..+.+++. +...+. +.++++|+||+|+|++++++++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H--P~~el~~l~s~~~-------------~~~~~~~~~~~~~D~vFlalp~~~s~~~~ 66 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR--DDIELLSIAPDRR-------------KDAAERAKLLNAADVAILCLPDDAAREAV 66 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC--CCeEEEEEecccc-------------cCcCCHhHhhcCCCEEEECCCHHHHHHHH
Confidence 68999999999999999999998 9999999977643 111122 2346799999999999999999
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccE---EEEE
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTR---MVVS 195 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~---v~vt 195 (279)
+++.++|++|||+|++||+++++||++||||++..+.++ +.++|||||||+|+++++|+||++...|++ ++++
T Consensus 67 ~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~----~a~lIAnPgC~aTa~~LaL~PL~~~~li~~~~~~~~~ 142 (310)
T TIGR01851 67 SLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIR----NSKRIANPGCYPTGFIALMRPLVEAGILPADFPITIN 142 (310)
T ss_pred HHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhc----cCCEEECCCCHHHHHHHHHHHHHHcCCccccceEEEE
Confidence 999999999999999999999999999999876655443 578999999999999999999999988854 6788
Q ss_pred EeecccccChhhHHHHHHHHH-HHh--cCCCC----------Cccc-----cccccccccccCCCCcccCCChHH
Q 023678 196 TYQAASGAGAAAMEELELQTR-EVL--EGKPP----------TCKI-----FSQQYAFNLFSHNAPVLENGYNEE 252 (279)
Q Consensus 196 t~q~vSGaG~~~~~El~~qt~-~l~--~g~~~----------~~~~-----f~~~iafN~iP~i~~~~~~g~t~e 252 (279)
+++|+|||||++++++.+|++ .-. +.++. +... ....|.++++|+.+|++.|.|..-
T Consensus 143 a~SG~SGAGr~~~~~l~~q~~~~e~~~~~~~Y~~~~~HrH~pEi~q~l~~~~~v~FtPhl~p~~RGil~Ti~~~l 217 (310)
T TIGR01851 143 AVSGYSGGGKAMIADYEQGSADNPSLQPFRIYGLALTHKHLPEMRVHSGLALPPIFTPAVGNFAQGMAVTIPLHL 217 (310)
T ss_pred eccccCccChhhhHHhhhcccchhhccCceeccCCCCCCcHHHHHHHhCCCCCEEEEeEEccccCcEEEEEEEEe
Confidence 888889999999999998876 111 01111 1100 124588999999999999998664
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=301.88 Aligned_cols=207 Identities=35% Similarity=0.480 Sum_probs=172.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE-eecCCCCceeee----C------C--ceeEEeecCccCCCCCc
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSF----Q------D--KAYTVEELTEDSFDGVD 103 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l-~s~~s~G~~~~~----~------~--~~~~v~~~d~~~~~~~D 103 (279)
|+++||+|+||||++|++|+++|.+| |.++++.+ .++++.|+.+.. . + .++.+...+++.+.++|
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~D 78 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDVD 78 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCCC
Confidence 34689999999999999999999987 99999988 777788876641 1 0 23455555555667899
Q ss_pred EEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccc---cCC-CCCcEEECCCChHHHHHHh
Q 023678 104 IALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK---VGM-GKGALIANPNCSTIICLMA 179 (279)
Q Consensus 104 vVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~---~~~-~~~~iVanPgC~tt~l~la 179 (279)
+||+|++++++.++++++.++|++|||+|++||+++++|+.+||+|++.+.... ... ++.++|||||||+|+++++
T Consensus 79 vVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~~~iVa~p~C~~t~~~l~ 158 (349)
T PRK08664 79 IVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTIGLVLA 158 (349)
T ss_pred EEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCCceEEEccCHHHHHHHHH
Confidence 999999999999999999999999999999999998899999999998653211 000 1357999999999999999
Q ss_pred hhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHH
Q 023678 180 ATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKE 259 (279)
Q Consensus 180 L~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E 259 (279)
|+||++ ++|++++|+|+||+||+|+++.++. .+++|++||..+ +|.|...|
T Consensus 159 l~pL~~-~gl~~i~v~~~~g~SgaG~~~~~~~--------------------~~~~N~~p~~~~--------~ehrh~~E 209 (349)
T PRK08664 159 LKPLMD-FGIERVHVTTMQAISGAGYPGVPSM--------------------DIVDNVIPYIGG--------EEEKIEKE 209 (349)
T ss_pred HHHHHH-CCCcEEEEEEEeccccCCcccchhh--------------------hhhcCcccccCc--------hhhhhhHH
Confidence 999999 8999999999999999999987632 157999999987 88999999
Q ss_pred HHHhcCCC--------CccEEee
Q 023678 260 TRKIWVSF--------KMNFFVS 274 (279)
Q Consensus 260 ~~kil~~~--------~~~v~~~ 274 (279)
++|+|+.. ++.|+.+
T Consensus 210 i~~~l~~~~~~~~~~~~~~v~~t 232 (349)
T PRK08664 210 TLKILGKFEGGKIVPADFPISAT 232 (349)
T ss_pred HHHHhhhcccccccCCCceEEEE
Confidence 99999763 5666665
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=280.59 Aligned_cols=203 Identities=18% Similarity=0.221 Sum_probs=168.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEe---------------ec--------CCCCceeeeCCceeEEe--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLA---------------SK--------RSAGKQLSFQDKAYTVE-- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~---------------s~--------~s~G~~~~~~~~~~~v~-- 92 (279)
++||||+|+ |.+|+.++|.|.+++|| .++++++. |. ++.|..+.++++.+.+.
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 479999998 99999999999988665 46665443 32 34566666677777776
Q ss_pred -ecCccCC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC
Q 023678 93 -ELTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 93 -~~d~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
+++..+| .++|+||+|+|...++++++.++++|+++||+|+++|+++++ ++|||||++.++. ..+|||||
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~-~vV~gVN~~~~~~------~~~IISna 152 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDA-TVVYGVNHDQLRA------EHRIVSNA 152 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCC-eEEeCcCHHHhCc------CCCEEECC
Confidence 4445567 589999999999999999999999999999999999988664 8999999999874 46899999
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCC
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
+|+|++++++|+||+++|+|+++.|||||++| +|+++++++.+++++ + +-++||+||+ +.
T Consensus 153 sCTTn~Lap~lk~L~~~fgI~~~~mTT~ha~t-~~Q~~vD~~~~d~rr---~---------r~~a~NiIP~-~t------ 212 (336)
T PRK13535 153 SCTTNCIIPVIKLLDDAFGIESGTVTTIHSAM-NDQQVIDAYHPDLRR---T---------RAASQSIIPV-DT------ 212 (336)
T ss_pred chHHHHHHHHHHHHHHhcCeeEEEEEEEEhhc-CCcchhhchhhcccc---c---------cEeeeccccC-cc------
Confidence 99999999999999999999999999999999 899999999877764 1 2268999998 32
Q ss_pred hHHHHhHHHHHHHhcCCCCccEEee
Q 023678 250 NEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 250 t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
++.+|++|||.....+++.+
T Consensus 213 -----gaa~a~~kilP~l~gkv~~~ 232 (336)
T PRK13535 213 -----KLAAGITRIFPQFNDRFEAI 232 (336)
T ss_pred -----HHHhhhhhcccCCCCcEEEE
Confidence 89999999994433335444
|
|
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=266.10 Aligned_cols=199 Identities=14% Similarity=0.216 Sum_probs=166.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC------------------------CCCceeeeCCceeEEe---
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR------------------------SAGKQLSFQDKAYTVE--- 92 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~------------------------s~G~~~~~~~~~~~v~--- 92 (279)
+||+|.|. |.+|+.++|.+.++ +.++++++.... +.|+.+.++++.+.+.
T Consensus 3 ikigInG~-GRiGr~v~r~~~~~--~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 3 IKVGINGF-GRIGRLALRAAWDW--PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNK 79 (334)
T ss_pred eEEEEECc-CHHHHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecC
Confidence 79999998 99999999998877 788888776421 1233344455667776
Q ss_pred ecCccCCCCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCCh
Q 023678 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172 (279)
Q Consensus 93 ~~d~~~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~ 172 (279)
+++..+|+++|+||+|+|...++++++.++++||++||+|++ |+++++|++|||||++.++.. ..+|||||+|+
T Consensus 80 ~~~~~~w~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap-~~d~d~p~vV~gVN~~~~~~~-----~~~IISnasCt 153 (334)
T PRK08955 80 AIADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP-VKEEGVLNIVMGVNDHLFDPA-----IHPIVTAASCT 153 (334)
T ss_pred ChhhCCccCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC-CCCCCCceEecccCHHHhccc-----CCCEEECCccH
Confidence 455567899999999999999999999999999999999999 999889999999999998730 26799999999
Q ss_pred HHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHH
Q 023678 173 TIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEE 252 (279)
Q Consensus 173 tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~e 252 (279)
|++++++|+||+++|+|+++.+||||++| |++.+++|.+.+. .|+++.+||+||++ +|++
T Consensus 154 Tn~Lap~lk~L~~~fgI~~~~mTTvha~t------------~~q~lld~~~~d~-r~~r~~a~NiIP~~-----tGaa-- 213 (334)
T PRK08955 154 TNCLAPVVKVIHEKLGIKHGSMTTIHDLT------------NTQTILDAPHKDL-RRARACGMSLIPTT-----TGSA-- 213 (334)
T ss_pred HHHHHHHHHHHHHhcCeeEEEEEEEEecc------------CccccccCCCccc-ccchhheecccccc-----CCCc--
Confidence 99999999999999999999999999999 5666667765455 78999999999998 5565
Q ss_pred HHhHHHHHHHhcCCCCcc--EEee
Q 023678 253 EMKMVKETRKIWVSFKMN--FFVS 274 (279)
Q Consensus 253 E~k~~~E~~kil~~~~~~--v~~~ 274 (279)
+|++||| |+|. ++.+
T Consensus 214 -----~a~~kvl--P~L~gkl~~~ 230 (334)
T PRK08955 214 -----TAITEIF--PELKGKLNGH 230 (334)
T ss_pred -----cccceEc--cccCCcEEEE
Confidence 7899999 6666 5544
|
|
| >PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=266.65 Aligned_cols=199 Identities=16% Similarity=0.227 Sum_probs=165.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe---------------ec---------CCCCceeeeCCceeEEee--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA---------------SK---------RSAGKQLSFQDKAYTVEE-- 93 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~---------------s~---------~s~G~~~~~~~~~~~v~~-- 93 (279)
+||||+|+ |.||+.++|.|.++++|.++++++. |. .+.|+.+.+.++.+.+..
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~ 139 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDR 139 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcC
Confidence 79999998 9999999999998888899999553 22 224555666677777764
Q ss_pred -cCccCC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 94 -LTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 94 -~d~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
++..+| .++|+||+|+|...+++++++++++||++||+|++ .++++|++||+||++.+.. ..+|||||+
T Consensus 140 dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap--~~~~~ptvV~GVN~~~l~~------~~~IISnaS 211 (395)
T PLN03096 140 NPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP--GKGDIPTYVVGVNADDYKH------SDPIISNAS 211 (395)
T ss_pred CcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC--CCCCCCeEeCccCHHHhcc------CCCEEECCc
Confidence 344567 48999999999999999999999999999999999 5667899999999999873 468999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCCh
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t 250 (279)
|+|++++++++||+++|+|+++.|||+|++||. +.++++...+.+ |+++.+||+||++ +|++
T Consensus 212 CTTn~LAp~lkvL~~~fGI~~g~mTTiHa~T~~------------Q~llD~~~~d~r-r~Raaa~NiIPts-----TGaa 273 (395)
T PLN03096 212 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD------------QRLLDASHRDLR-RARAAALNIVPTS-----TGAA 273 (395)
T ss_pred hHHHHHHHHHHHHHHhcCeeEEEEEEEEccccc------------cccccCCCCccc-cchhhhccccccC-----CCcc
Confidence 999999999999999999999999999999998 234456555565 9999999999998 6666
Q ss_pred HHHHhHHHHHHHhcCCCCcc--EEee
Q 023678 251 EEEMKMVKETRKIWVSFKMN--FFVS 274 (279)
Q Consensus 251 ~eE~k~~~E~~kil~~~~~~--v~~~ 274 (279)
+ |++||| |+|. ++.+
T Consensus 274 k-------av~kVl--P~L~gkl~g~ 290 (395)
T PLN03096 274 K-------AVALVL--PNLKGKLNGI 290 (395)
T ss_pred h-------hhhhcc--cccCCcEEEE
Confidence 5 889998 6666 5443
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=263.77 Aligned_cols=194 Identities=16% Similarity=0.214 Sum_probs=161.0
Q ss_pred EEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEee---c--------------------CCCCceeeeCCceeEEe---e
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLAS---K--------------------RSAGKQLSFQDKAYTVE---E 93 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s---~--------------------~s~G~~~~~~~~~~~v~---~ 93 (279)
||||+|+ |.+|+.++|.|.+++ -+.++++.+.. . ++.|..+.+.++.+.+. +
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 6999997 999999999998762 13567776643 2 22344455556666665 3
Q ss_pred cCccCC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 94 LTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 94 ~d~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
++..+| .++|+||+|+|...+++++++++++|+++||+|+++|+++++ ++|||||++.++. ..+|||||+|
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~-~vV~gVN~~~~~~------~~~IISnasC 152 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDA-TIVYGVNQQDLSA------EHTIVSNASC 152 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCc-eEEeccCHHHhCC------CCCEEeCCCc
Confidence 444457 589999999999999999999999999999999999987665 8999999999874 4689999999
Q ss_pred hHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCcccccccccc-ccccCCCCcccCCCh
Q 023678 172 STIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAF-NLFSHNAPVLENGYN 250 (279)
Q Consensus 172 ~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iaf-N~iP~i~~~~~~g~t 250 (279)
+|++++++|+||+++|+|+++.|||||++|+ |+++++++..+++. .+.+| |+||+ +.
T Consensus 153 tTn~lap~lk~L~~~fgI~~~~~tTvha~t~-~q~~vD~~~~d~r~-------------~r~a~~NiIP~-~t------- 210 (325)
T TIGR01532 153 TTNCIVPLIKLLDDAIGIESGTITTIHSAMN-DQQVIDAYHHDLRR-------------TRAASQSIIPV-DT------- 210 (325)
T ss_pred HHHHHHHHHHHHHHhcCeeEEEEEEEEhhcC-Cccccccchhhccc-------------cchHhhCeeeC-Cc-------
Confidence 9999999999999999999999999999999 99999999877663 35688 99997 33
Q ss_pred HHHHhHHHHHHHhcCCCCcc
Q 023678 251 EEEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 251 ~eE~k~~~E~~kil~~~~~~ 270 (279)
++.+|++||| |+|.
T Consensus 211 ----~~a~a~~kil--P~L~ 224 (325)
T TIGR01532 211 ----KLARGIERLF--PEFA 224 (325)
T ss_pred ----cHHHHHHHhC--cccC
Confidence 7889999999 5566
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=253.94 Aligned_cols=193 Identities=17% Similarity=0.242 Sum_probs=159.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-------------Cc----------eeeeCCceeEEe---e
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK----------QLSFQDKAYTVE---E 93 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-------------G~----------~~~~~~~~~~v~---~ 93 (279)
+||||.| .|.+||.++|.+.++ +.++++++...... |+ .+.++++.+.+. +
T Consensus 3 ~~i~inG-fGRIGr~~~r~~~~~--~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 79 (331)
T PRK15425 3 IKVGING-FGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD 79 (331)
T ss_pred eEEEEEe-eChHHHHHHHHHHHC--CCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCC
Confidence 6999999 899999999998777 88999988643211 11 112234556665 4
Q ss_pred cCccCCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 94 LTEDSFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 94 ~d~~~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
++..+|. ++|+||+|+|...++++++.++++||++||+|++ +++++|++|||||++.+. +.++||||+|
T Consensus 80 p~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap--~~~~vp~vV~gVN~~~~~-------~~~IISnaSC 150 (331)
T PRK15425 80 PANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP--SKDNTPMFVKGANFDKYA-------GQDIVSNASC 150 (331)
T ss_pred hhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCC--CCCCCCEEEcccCHHHcC-------CCCEEECCCc
Confidence 4445687 9999999999999999999999999999999999 677789999999999886 3579999999
Q ss_pred hHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChH
Q 023678 172 STIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNE 251 (279)
Q Consensus 172 ~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~ 251 (279)
+|++++++|+||++.|+|+++.+||+|++|+. + .+++|.+.++..|+++.+||+||++ +|++
T Consensus 151 tTn~Lapvlk~L~~~fgI~~g~mTTvha~T~~-q-----------~llD~~~~~d~r~~R~aa~NiIPt~-----tGaa- 212 (331)
T PRK15425 151 TTNCLAPLAKVINDNFGIIEGLMTTVHATTAT-Q-----------KTVDGPSHKDWRGGRGASQNIIPSS-----TGAA- 212 (331)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEEEEEeccCc-c-----------ccccCCCCcccccCcchhhceeccc-----CCch-
Confidence 99999999999999999999999999999998 5 2345554556689999999999998 5555
Q ss_pred HHHhHHHHHHHhcCCCCcc
Q 023678 252 EEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 252 eE~k~~~E~~kil~~~~~~ 270 (279)
+|++||| |+|.
T Consensus 213 ------~av~kIl--P~L~ 223 (331)
T PRK15425 213 ------KAVGKVL--PELN 223 (331)
T ss_pred ------HHHHhhc--cccC
Confidence 7999999 6666
|
|
| >TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=249.72 Aligned_cols=198 Identities=18% Similarity=0.217 Sum_probs=156.8
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-------------CC----------c-eeeeCCc-eeEEe---
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AG----------K-QLSFQDK-AYTVE--- 92 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-------------~G----------~-~~~~~~~-~~~v~--- 92 (279)
||||.| .|.+||.++|.+.++..+.++++++..... -| . .+.++++ .+.+.
T Consensus 1 ~i~ING-fGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGING-FGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEc-cChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 699999 899999999998765223688888864211 11 1 2333445 55555
Q ss_pred ecCccCCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 93 ELTEDSFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 93 ~~d~~~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
+++..+|. ++|+||+|+|...++++++.++++||++||+|++ |+++ +|++|||||++.++. ..+|||||+
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap-~~d~-~plvV~gVN~~~~~~------~~~IISn~s 151 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAP-SKGD-APTIVYGVNHDEYDP------EERIISNAS 151 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCC-CCCC-CCeecCCCCHHHhCC------CCCEEecCC
Confidence 44445687 8999999999999999999999999999999999 8876 899999999999873 467999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCCh
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t 250 (279)
|+|++++++|+||++.|+|+++.|||+|++||.+ .+++|.+.+. .|+++++||+||++ +|++
T Consensus 152 CtTn~Lap~lk~L~~~fgI~~~~~TTiha~t~~q------------~lld~~~~d~-r~~r~~a~NiIP~~-----tg~a 213 (327)
T TIGR01534 152 CTTNCLAPLAKVLDEAFGIVSGLMTTVHSYTNDQ------------NLVDGPHKDL-RRARAAALNIIPTS-----TGAA 213 (327)
T ss_pred chHHHHHHHHHHHHHhcCeeEEEEEEEEeecCcc------------ccccCCCCCC-cCceEeEeeeeccC-----CChH
Confidence 9999999999999999999999999999999943 3344543333 68899999999998 3444
Q ss_pred HHHHhHHHHHHHhcCCCCccEEee
Q 023678 251 EEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 251 ~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
+|++||| |+|.-.++
T Consensus 214 -------k~~~kvl--P~L~gkv~ 228 (327)
T TIGR01534 214 -------KAIGKVL--PELAGKLT 228 (327)
T ss_pred -------HHHhhcc--ccCCCeEE
Confidence 6788888 66663344
|
The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. |
| >PLN02358 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=245.45 Aligned_cols=200 Identities=18% Similarity=0.214 Sum_probs=158.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--------------CC------------ceeeeCCceeEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--------------AG------------KQLSFQDKAYTVE 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--------------~G------------~~~~~~~~~~~v~ 92 (279)
++||||+| .|++|+..+|.+.++ |.++++++.+... -| +.+.++++.+.+.
T Consensus 5 ~lrVaI~G-~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 5 KIRIGING-FGRIGRLVARVVLQR--DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred ceEEEEEe-ecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 58999999 799999999998877 8999999875321 11 1122234455555
Q ss_pred ecC---ccCC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEE
Q 023678 93 ELT---EDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIA 167 (279)
Q Consensus 93 ~~d---~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVa 167 (279)
..+ ..+| .++|+||+|+|...++++++.++++||++||+|+. .+++|++|||||++.+.. +.+|||
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap---~~dvp~iV~gVN~~~~~~------~~~IIS 152 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAP---SKDAPMFVVGVNEHEYKS------DLDIVS 152 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCC---CCCCCeEecCcCHHHhCC------CCCEEE
Confidence 443 2346 58999999999999999999999999999999955 467899999999999874 468999
Q ss_pred CCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccC
Q 023678 168 NPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (279)
Q Consensus 168 nPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~ 247 (279)
||+|+|++++++|+||++.|+|+++.|||||++||+++ ++.|.+.+...|+++++||+||++.+
T Consensus 153 nasCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~------------l~d~~~~~d~r~~ra~a~NiIP~~tG---- 216 (338)
T PLN02358 153 NASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGGRAASFNIIPSSTG---- 216 (338)
T ss_pred CCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCccc------------ccCCCCCccccCccccccccccCCcc----
Confidence 99999999999999999999999999999999999953 22343334456899999999999844
Q ss_pred CChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 248 GYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 248 g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
+ .+|++|||...+.+++.+
T Consensus 217 -a-------aka~~kIlP~l~gkl~g~ 235 (338)
T PLN02358 217 -A-------AKAVGKVLPSLNGKLTGM 235 (338)
T ss_pred -h-------hhhhhhccccCCCcEEEE
Confidence 3 468999995443335443
|
|
| >PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=249.49 Aligned_cols=190 Identities=17% Similarity=0.232 Sum_probs=150.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-CC-------------Cc---eee-------eCCceeEEe-ec
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SA-------------GK---QLS-------FQDKAYTVE-EL 94 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s~-------------G~---~~~-------~~~~~~~v~-~~ 94 (279)
+||||.| .|.+||.++|.+.++ +.++++++.... +. |+ .+. ..++.+.+. +-
T Consensus 3 ~ki~ING-fGRIGr~v~r~~~~~--~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~ 79 (337)
T PTZ00023 3 VKLGING-FGRIGRLVFRAALER--EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEK 79 (337)
T ss_pred eEEEEEC-cChHHHHHHHHHHhc--CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCC
Confidence 6999999 899999999998876 789999886421 11 11 111 122334432 22
Q ss_pred Ccc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 95 TED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 95 d~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
++. .|. ++|+||+|+|...++++++.++++||++||+|+ ++++++|++|||||++.+.. +.+|||||+
T Consensus 80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSa--p~~~~vp~vV~gVN~~~~~~------~~~IISnas 151 (337)
T PTZ00023 80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSA--PPKDDTPIYVMGVNHTQYDK------SQRIVSNAS 151 (337)
T ss_pred ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCC--CCCCCCCeEEcccCHHHhCC------CCCEEECCc
Confidence 333 354 899999999999999999999999999999999 47778899999999999874 467999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCcc--ccccccccccccCCCCcccCC
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCK--IFSQQYAFNLFSHNAPVLENG 248 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~--~f~~~iafN~iP~i~~~~~~g 248 (279)
|+|++++++|+||+++|+|+++.+||||++| .+|+ +++|.+.+.+ .|+++++||+||++ +|
T Consensus 152 CTTn~Lap~lk~L~~~fgI~~~~~TT~ha~T----------~~Q~--lld~~~~~~kd~r~~r~~a~NiIP~~-----tG 214 (337)
T PTZ00023 152 CTTNCLAPLAKVVNDKFGIVEGLMTTVHAST----------ANQL--TVDGPSKGGKDWRAGRCAGVNIIPAS-----TG 214 (337)
T ss_pred cHHHHHHHHHHHHHHhcCeeEEEEEEEEecC----------CCce--ecCCcCcccCCCcccceeeccccccC-----CC
Confidence 9999999999999999999999999999999 2333 4456544334 67899999999998 56
Q ss_pred ChHHHHhHHHHHHHhc
Q 023678 249 YNEEEMKMVKETRKIW 264 (279)
Q Consensus 249 ~t~eE~k~~~E~~kil 264 (279)
+++ |++|+|
T Consensus 215 aak-------av~kVl 223 (337)
T PTZ00023 215 AAK-------AVGKVI 223 (337)
T ss_pred cch-------hhhhee
Confidence 776 566666
|
|
| >PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=247.29 Aligned_cols=192 Identities=17% Similarity=0.264 Sum_probs=154.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--------------Cc-----------eeeeCCceeEEe-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------------GK-----------QLSFQDKAYTVE- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--------------G~-----------~~~~~~~~~~v~- 92 (279)
|+||+|+| .|.+||.++|.+.++ +.++++++...... |+ .+.++++.+.+.
T Consensus 85 ~~kvgInG-FGRIGR~v~R~~~~~--~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~ 161 (421)
T PLN02272 85 KTKIGING-FGRIGRLVLRIATSR--DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTS 161 (421)
T ss_pred ceEEEEEC-cCHHHHHHHHHHhhc--CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEe
Confidence 36999999 899999999998765 67888887653210 11 122234556665
Q ss_pred --ecCccCCC--CCcEEEecCCCchhhhhHHHHHhCCC--EEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEE
Q 023678 93 --ELTEDSFD--GVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALI 166 (279)
Q Consensus 93 --~~d~~~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~--~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iV 166 (279)
+++..+|. ++|+||+|+|...++++++.++++|| +|||+++ +|+|++|||||++.++. +.+||
T Consensus 162 ~~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~-----~dvPlvV~gVN~~~l~~------~~~II 230 (421)
T PLN02272 162 KRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP------NMNIV 230 (421)
T ss_pred cCCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCC-----CCCCeEEeccCHHHhCC------CCCee
Confidence 34445676 89999999999999999999999999 8999883 46799999999999974 46899
Q ss_pred ECCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCccc
Q 023678 167 ANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLE 246 (279)
Q Consensus 167 anPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~ 246 (279)
|||+|+|++++++|+||++.|+|+++.+||||++|| ++.+++|...+...|+++++||+||++
T Consensus 231 SnaSCTTn~Lap~lk~L~~~fGI~~g~mTTvha~T~------------tQ~llD~~~~~d~r~~R~aa~NIIPt~----- 293 (421)
T PLN02272 231 SNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTA------------TQKTVDGPSMKDWRGGRGASQNIIPSS----- 293 (421)
T ss_pred eCCCcHHHHHHHHHHHHHHhCCeEEEEEEEEEeccC------------ccccccCccccccccCCCcccccccCC-----
Confidence 999999999999999999999999999999999999 334455554455678999999999998
Q ss_pred CCChHHHHhHHHHHHHhcCCCCcc
Q 023678 247 NGYNEEEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 247 ~g~t~eE~k~~~E~~kil~~~~~~ 270 (279)
+|+++ |++||| |+|.
T Consensus 294 tGaak-------av~kVL--P~L~ 308 (421)
T PLN02272 294 TGAAK-------AVGKVL--PELN 308 (421)
T ss_pred Cccch-------hhhhcc--cccC
Confidence 55655 888998 6665
|
|
| >PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=234.38 Aligned_cols=198 Identities=17% Similarity=0.238 Sum_probs=155.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-------------Cc----------eeeeCCceeEEee-c
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK----------QLSFQDKAYTVEE-L 94 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-------------G~----------~~~~~~~~~~v~~-~ 94 (279)
|+||||.| .|.+||.++|.+.++..+.++++++...... |+ .+.++++.+.+.. .
T Consensus 1 ~~ki~ING-fGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAING-FGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEc-cChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 57999999 8999999999977653357888888642211 11 1122345555543 4
Q ss_pred Ccc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 95 TED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 95 d~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
+++ +|. ++|+||+|+|...++++++.++++||++||+|+. |.++|+|++||+||++.+.. . ..+|||||+
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap-~~d~d~p~vV~gVN~~~~~~-~----~~~IISnas 153 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAP-GKGEDIGTYVVGVNHHEYDH-E----DHNIISNAS 153 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCC-CCCCCCceEecccCHHHhcc-C----CCCEEECCc
Confidence 433 466 8999999999999999999999999999999996 88888899999999999863 1 367999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCCh
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t 250 (279)
|+|++++++|+||+++|+|+++.+||+|++|+.+ +.++...... -+++..++|+||... |++
T Consensus 154 CTTn~Lap~lkvL~~~fgI~~~~mTTiha~T~~q-~~~D~~~~d~------------r~~raaa~NiIPt~t-----Gaa 215 (337)
T PRK07403 154 CTTNCLAPIAKVLHDNFGIIKGTMTTTHSYTGDQ-RILDASHRDL------------RRARAAAVNIVPTST-----GAA 215 (337)
T ss_pred HHHHHHHHHHHHHHHhcCeeEEEEEEEeeecCCc-cccccccccc------------ccccccccccccCCc-----chh
Confidence 9999999999999999999999999999999999 5666543221 246678999999875 677
Q ss_pred HHHHhHHHHHH
Q 023678 251 EEEMKMVKETR 261 (279)
Q Consensus 251 ~eE~k~~~E~~ 261 (279)
+++.+..-|+.
T Consensus 216 kav~~vlP~L~ 226 (337)
T PRK07403 216 KAVALVIPELK 226 (337)
T ss_pred hhhhhcCcccC
Confidence 77765444443
|
|
| >PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=228.74 Aligned_cols=189 Identities=19% Similarity=0.240 Sum_probs=153.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-------------CC----------ceeeeCCceeEEe---e
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AG----------KQLSFQDKAYTVE---E 93 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-------------~G----------~~~~~~~~~~~v~---~ 93 (279)
+||+|.| .|.+||.++|.+.++ +.++++++....+ -| ..+.++++.+.+. +
T Consensus 3 ~ki~ING-fGRIGR~~~r~~~~~--~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~d 79 (343)
T PRK07729 3 TKVAING-FGRIGRMVFRKAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRD 79 (343)
T ss_pred eEEEEEC-cChHHHHHHHHHhhc--CCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCC
Confidence 6999999 899999999998776 7899998864221 01 1122234455554 3
Q ss_pred cCccCC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 94 LTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 94 ~d~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
++..+| .++|+||+|+|...++++++.++++||++||+|+. |.++++|+ |+|||++.+.. . ..+|||||+|
T Consensus 80 p~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap-~~d~d~~l-V~gVN~~~~~~-~----~~~IISnaSC 152 (343)
T PRK07729 80 PKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAP-GKNEDVTI-VVGVNEDQLDI-E----KHTIISNASC 152 (343)
T ss_pred hhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCC-CCCCCCcE-EecccHHHhcc-C----CCCEEECCch
Confidence 333457 48999999999999999999999999999999966 88878887 77999999863 1 3679999999
Q ss_pred hHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccc------cccccccccCCCC
Q 023678 172 STIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS------QQYAFNLFSHNAP 243 (279)
Q Consensus 172 ~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~------~~iafN~iP~i~~ 243 (279)
+|++++++|+||++.|+|+++.+||+|++||. .+.++++.+++++ ++....+++| +++. |++|++++
T Consensus 153 TTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~-Q~~~D~~~~d~rr---~R~a~~niiPtstgaa~ai~-~viP~l~g 225 (343)
T PRK07729 153 TTNCLAPVVKVLDEQFGIENGLMTTVHAYTND-QKNIDNPHKDLRR---ARACGQSIIPTTTGAAKALA-KVLPHLNG 225 (343)
T ss_pred HHHHHHHHHHHHHHhcCeeEEEEEEEecccCc-ccccccchhhhhc---ccccccceecCCCcchhhHH-HhccccCC
Confidence 99999999999999999999999999999994 8889988877663 4555556677 7788 99999986
|
|
| >KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-29 Score=220.95 Aligned_cols=218 Identities=19% Similarity=0.286 Sum_probs=157.3
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CCceeEEeecCc------cCCCCCcEEEecC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELTE------DSFDGVDIALFSA 109 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~~~~~v~~~d~------~~~~~~DvVf~a~ 109 (279)
.+..||+++||.||+|.+|++++..| |++++..+.||+-+|+++.. ...++...++.. +.-..+|...+++
T Consensus 17 ~k~~rv~LlGArGYTGknlv~Lin~H--Pylevthvssrel~Gqkl~~ytk~eiqy~~lst~D~~klee~~avd~wvmaL 94 (340)
T KOG4354|consen 17 EKDIRVGLLGARGYTGKNLVRLINNH--PYLEVTHVSSRELAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAVDHWVMAL 94 (340)
T ss_pred CCCceEEEEeccccchhhHHHHhcCC--CceEEEeeehhhhcCCcccCcchhheeecccchhhHHHhhcCCceeeeeeec
Confidence 45689999999999999999999888 99999999999999998762 222222223221 1123578999999
Q ss_pred CCchhhhhHHHHHhC-CC-EEEEcCCCCCCCC--CCceeeccCC-HHhhhccccCCCCCcEEECCCChHHHHHHhhhchh
Q 023678 110 GGSISKKFGPIAVEK-GS-IVVDNSSAFRMVE--NVPLVIPEVN-PEAMSGIKVGMGKGALIANPNCSTIICLMAATPLH 184 (279)
Q Consensus 110 g~~~s~~~~~~~~~a-G~-~VIDlS~~~R~~~--~vplvvPevN-~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~ 184 (279)
|..+.+.++...... |. ++||+|++||+.+ +|.|++||+| +++|+ ++++|||||||+|...+.|-||.
T Consensus 95 Pn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-------na~~iaNPGCYaTgsQl~l~Pll 167 (340)
T KOG4354|consen 95 PNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-------NARLIANPGCYATGSQLPLVPLL 167 (340)
T ss_pred chhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-------hhhhccCCCcccccCcccchHHH
Confidence 999999998877543 33 6999999999987 8999999999 88888 68999999999999999999999
Q ss_pred hhcCccEEEEEEeecccccChhhH-----HHHHHHHHHHh-c----CCCCCc-cccccccccccccCCCCcccCCChHHH
Q 023678 185 RRAKVTRMVVSTYQAASGAGAAAM-----EELELQTREVL-E----GKPPTC-KIFSQQYAFNLFSHNAPVLENGYNEEE 253 (279)
Q Consensus 185 ~~~~i~~v~vtt~q~vSGaG~~~~-----~El~~qt~~l~-~----g~~~~~-~~f~~~iafN~iP~i~~~~~~g~t~eE 253 (279)
+...++ -.|..++|+||||+++. .||.+.+.-+. . -+.++. ..-+.-|.+++.||+.++.-+.|...-
T Consensus 168 k~i~g~-p~ifgvSGySGAGtkpspkNd~~~l~nnlipY~ltdHiHerEIs~r~k~~VaF~PHv~qwfqGi~lTi~vpmk 246 (340)
T KOG4354|consen 168 KAILGK-PEIFGVSGYSGAGTKPSPKNDYSELANNLIPYGLTDHIHEREISQRSKVTVAFTPHVMQWFQGIQLTIYVPMK 246 (340)
T ss_pred HHhcCC-cceeeeccccCCCCCCCCccCHHHHhcCCccccccccchhHhHHHhhCCceeechhHHHHhhhceEEEEEeec
Confidence 976554 33789999999999884 22222111100 0 000000 011224678999999999777664332
Q ss_pred H-hHHHHHHHhc
Q 023678 254 M-KMVKETRKIW 264 (279)
Q Consensus 254 ~-k~~~E~~kil 264 (279)
. -..+|+|++|
T Consensus 247 ksv~~~elr~ly 258 (340)
T KOG4354|consen 247 KSVRTEELRQLY 258 (340)
T ss_pred CcccHHHHHHHH
Confidence 2 2234555554
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-28 Score=198.88 Aligned_cols=112 Identities=35% Similarity=0.539 Sum_probs=99.4
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeCC------ceeEEeecCccCCCCCcEEEecCCCch
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQD------KAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~~------~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
||+|+|||||+|++|+++|.+| |.+++..+.+++. .|+.+.+.. .++.+.+.+.+.+.++|+||+|+|++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~ 78 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA 78 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH
Confidence 7999999999999999999997 9999998887776 999887643 356676766666789999999999999
Q ss_pred hhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 114 s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
+++++++++++|++|||+|++||+++++||++||||+++|+
T Consensus 79 ~~~~~~~~~~~g~~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 79 SKELAPKLLKAGIKVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp HHHHHHHHHHTTSEEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred HHHHHHHHhhCCcEEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 99999999999999999999999999999999999999987
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=212.38 Aligned_cols=153 Identities=19% Similarity=0.236 Sum_probs=124.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---------Cceee---------eCCceeEEeecCccCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---------GKQLS---------FQDKAYTVEELTEDSFD 100 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---------G~~~~---------~~~~~~~v~~~d~~~~~ 100 (279)
|+||||+|+ |.+|+.+++.+.++ |+++++.+..++.. |..+. +.+..+.+.+...+.+.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~--~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQ--PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcC--CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence 479999998 99999999999887 99999998764321 11100 11112333322123346
Q ss_pred CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhh
Q 023678 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180 (279)
Q Consensus 101 ~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL 180 (279)
++|+||+|+|.+.+.++++.++++|++|||+++.++..+++++ +||+|.+.+.. ..+|+||||+|++++++|
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~~~~~~~~~~-v~~vN~~~~~~-------~~~v~~~sCtT~~l~~~l 149 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYEKAGVKAIFQGGEKAEVAGVSF-NALANYEEALG-------KDYVRVVSCNTTGLCRTL 149 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCCCCCCCCCCcE-EeeECHHHhCC-------CCcEEccChHHHHHHHHH
Confidence 8999999999999999999999999999999999887777777 99999998862 348999999999999999
Q ss_pred hchhhhcCccEEEEEEeecccc
Q 023678 181 TPLHRRAKVTRMVVSTYQAASG 202 (279)
Q Consensus 181 ~PL~~~~~i~~v~vtt~q~vSG 202 (279)
+||++.|+|+++.+||+|++|+
T Consensus 150 ~~L~~~fgI~~~~vTtv~a~td 171 (341)
T PRK04207 150 CALDRAFGVKKVRATLVRRAAD 171 (341)
T ss_pred HHHHHhcCceEEEEEEEEcCCC
Confidence 9999999999999999999885
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-25 Score=207.06 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=137.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeee-CCceeEEeecC----ccCCCCCcEEEecC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF-QDKAYTVEELT----EDSFDGVDIALFSA 109 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~-~~~~~~v~~~d----~~~~~~~DvVf~a~ 109 (279)
|+++|||||| +|.+|+.++..+.+. +.++++++++.+. .|..... .+......+.+ ..+|.++|+||+|+
T Consensus 2 m~klrVAIIG-tG~IGt~hm~~l~~~--~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT 78 (302)
T PRK08300 2 MSKLKVAIIG-SGNIGTDLMIKILRS--EHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDAT 78 (302)
T ss_pred CCCCeEEEEc-CcHHHHHHHHHHhcC--CCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECC
Confidence 4568999999 999999999888876 8999999987643 2321111 11111112222 23467899999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCc
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKV 189 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i 189 (279)
++..+++++++++++|+.|||++++|+ +||+|||||.+++...+ +.++|+||||.+++++++|+|+.+ ..+
T Consensus 79 ~a~~H~e~a~~a~eaGk~VID~sPA~~----~PlvVP~VN~~~~~~~~----~~~iia~p~~ati~~v~Al~~v~~-~~~ 149 (302)
T PRK08300 79 SAGAHVRHAAKLREAGIRAIDLTPAAI----GPYCVPAVNLDEHLDAP----NVNMVTCGGQATIPIVAAVSRVAP-VHY 149 (302)
T ss_pred CHHHHHHHHHHHHHcCCeEEECCcccc----CCcccCcCCHHHHhccc----CCCEEECccHHHHHHHHHhcccCc-Cce
Confidence 999999999999999999999999994 69999999999887532 579999999999999999999654 466
Q ss_pred cEEEEEEeeccc-ccC-hhhHHHHHHHHHHHh
Q 023678 190 TRMVVSTYQAAS-GAG-AAAMEELELQTREVL 219 (279)
Q Consensus 190 ~~v~vtt~q~vS-GaG-~~~~~El~~qt~~l~ 219 (279)
.+|+ +||++.| |.| |.+++|+.+||+..+
T Consensus 150 ~eIv-at~~s~s~g~gtr~nidE~~~~t~~~~ 180 (302)
T PRK08300 150 AEIV-ASIASKSAGPGTRANIDEFTETTSRAI 180 (302)
T ss_pred eeee-eeehhhccCCcccccHHHHHHHHHHHH
Confidence 6776 9999999 999 999999999999875
|
|
| >PLN02237 glyceraldehyde-3-phosphate dehydrogenase B | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=210.67 Aligned_cols=158 Identities=18% Similarity=0.224 Sum_probs=129.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-------------CC-----------ceeeeCCceeEEeec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AG-----------KQLSFQDKAYTVEEL 94 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-------------~G-----------~~~~~~~~~~~v~~~ 94 (279)
++||+|.| .|.+||.++|.+.++..+.++++++..... -| +.+.++++.+.+.+.
T Consensus 75 ~ikVgING-FGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~ 153 (442)
T PLN02237 75 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSN 153 (442)
T ss_pred eEEEEEEC-CChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEc
Confidence 37999999 899999999997654336789988864211 01 112223455666554
Q ss_pred -C--ccCC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC
Q 023678 95 -T--EDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 95 -d--~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
+ ..+| .++|+||+|+|...++++++.++++||++||+| ++|.++++|++|||||++.+... ..+|||||
T Consensus 154 ~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS-AP~~d~dvptvV~GVN~~~~~~~-----~~~IISna 227 (442)
T PLN02237 154 RDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGADIPTYVVGVNEDDYDHE-----VANIVSNA 227 (442)
T ss_pred CCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC-CCCCCCCCceEecccCHHHhCcC-----CCCEEECC
Confidence 4 3357 589999999999999999999999999999999 67888788999999999998740 26899999
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeeccccc
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGA 203 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGa 203 (279)
+|+|++++++|+||+++|+|+++.+||+|++||-
T Consensus 228 SCTTNcLAPvlkvL~d~fGI~~g~mTTvHs~T~d 261 (442)
T PLN02237 228 SCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGD 261 (442)
T ss_pred chHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCC
Confidence 9999999999999999999999999999999983
|
|
| >PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=195.31 Aligned_cols=186 Identities=19% Similarity=0.175 Sum_probs=136.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-C-------------CCc----eeee-------CC-ceeEEe-
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-S-------------AGK----QLSF-------QD-KAYTVE- 92 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s-------------~G~----~~~~-------~~-~~~~v~- 92 (279)
+||||.| .|.+||.++|.+.++ +.++++++...- + -|+ .+.. .+ +.+.+.
T Consensus 3 ~kv~ING-fGRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~ 79 (342)
T PTZ00353 3 ITVGING-FGPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSA 79 (342)
T ss_pred eEEEEEC-CChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEe
Confidence 6999999 899999999998777 889999986521 1 121 1211 22 344443
Q ss_pred ecC--ccCCC--CCcEEEecCCCchhhhhHHHHHh---CCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcE
Q 023678 93 ELT--EDSFD--GVDIALFSAGGSISKKFGPIAVE---KGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGAL 165 (279)
Q Consensus 93 ~~d--~~~~~--~~DvVf~a~g~~~s~~~~~~~~~---aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~i 165 (279)
+-+ ..+|. ++|+||+|+|...+++-+..+++ +|+.|+|.| +++|++||+||++.++. ..+|
T Consensus 80 ~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps------~d~p~vV~gVN~~~~~~------~~~I 147 (342)
T PTZ00353 80 KHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQS------ADAPTVMAGSNDERLSA------SLPV 147 (342)
T ss_pred cCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCC------CCCCeEEecCChHHcCC------CCCE
Confidence 222 34577 89999999999855554444444 455677765 34799999999999873 4679
Q ss_pred EECCCChHHHHHHhhhchhhhcCccEEEEEEe---ecccccCh-hhHHHHHHHHHHHhcCCCCCcccccccccc-ccccC
Q 023678 166 IANPNCSTIICLMAATPLHRRAKVTRMVVSTY---QAASGAGA-AAMEELELQTREVLEGKPPTCKIFSQQYAF-NLFSH 240 (279)
Q Consensus 166 VanPgC~tt~l~laL~PL~~~~~i~~v~vtt~---q~vSGaG~-~~~~El~~qt~~l~~g~~~~~~~f~~~iaf-N~iP~ 240 (279)
||||+|+|++++++++||+++|+|+++.+||+ |+.|++|. .++.|+.++.+ .|| |++|.
T Consensus 148 ISnaSCTTn~LapvlkvL~~~fGI~~g~mTTvHs~q~~~~~d~~~~~~~d~rr~R----------------aA~~nIiPt 211 (342)
T PTZ00353 148 CCAGAPIAVALAPVIRALHEVYGVEECSYTAIHGMQPQEPIAARSKNSQDWRQTR----------------VAIDAIAPY 211 (342)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCeeEEEeeeeeecceeecCCCcccccccccccc----------------hHHhCCccc
Confidence 99999999999999999999999999999999 88899987 67777766533 333 45553
Q ss_pred CCCcccCCChHHHHhHHHHHHHhcCCCCcc
Q 023678 241 NAPVLENGYNEEEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 241 i~~~~~~g~t~eE~k~~~E~~kil~~~~~~ 270 (279)
. ..++ +|++||| |+|.
T Consensus 212 s----tgaa--------kav~kVl--P~L~ 227 (342)
T PTZ00353 212 R----DNGA--------ETVCKLL--PHLV 227 (342)
T ss_pred C----Ccch--------hhhhhhc--cccC
Confidence 3 2232 7999999 5666
|
|
| >PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-21 Score=183.20 Aligned_cols=196 Identities=11% Similarity=0.184 Sum_probs=149.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC--CCceEEEEEeecCC-CCc-------------------eeee---------CCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD--FPYRSIKMLASKRS-AGK-------------------QLSF---------QDK 87 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~--~p~~~l~~l~s~~s-~G~-------------------~~~~---------~~~ 87 (279)
..||+|.| .|.+||.++|.|.++. .+.++++++..|.. .+. .+.. .+.
T Consensus 127 ~~~V~InG-FGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~ 205 (477)
T PRK08289 127 PRDVVLYG-FGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGN 205 (477)
T ss_pred CceEEEEC-CCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCE
Confidence 57999999 9999999999987652 24688988853211 110 0110 122
Q ss_pred eeEEe-ecCcc--CCC--CCc--EEEecCCCchhhhhHHHHHh-CCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccC
Q 023678 88 AYTVE-ELTED--SFD--GVD--IALFSAGGSISKKFGPIAVE-KGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG 159 (279)
Q Consensus 88 ~~~v~-~~d~~--~~~--~~D--vVf~a~g~~~s~~~~~~~~~-aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~ 159 (279)
.+.+. +-+++ +|. ++| +|+.|+|....++-+..+++ +|++-|=+|++. ++++|++||+||++.+..
T Consensus 206 ~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~--k~d~p~iV~GVN~~~~~~---- 279 (477)
T PRK08289 206 YIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPG--KGDIKNIVHGVNHSDITD---- 279 (477)
T ss_pred EEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCC--CCCCCeEEcccCHHHhCC----
Confidence 23332 22233 353 799 99999999999999999998 899644488884 456799999999999863
Q ss_pred CCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCcccccccccccccc
Q 023678 160 MGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFS 239 (279)
Q Consensus 160 ~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP 239 (279)
..+|||||+|+|+|++++|+||++.|+|++..++|+|++|+ |...++++..+. .++++.++|+||
T Consensus 280 --~~~IISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~-dQ~lvD~~hkd~------------RrgRaaa~NIIp 344 (477)
T PRK08289 280 --EDKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTN-DQNLIDNYHKGD------------RRGRSAPLNMVI 344 (477)
T ss_pred --CCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccC-ChHHhhhhhhcC------------cccceeeeeeEe
Confidence 46799999999999999999999999999999999999999 999999886432 356788999997
Q ss_pred CCCCcccCCChHHHHhHHHHHHHhcCCCCcc
Q 023678 240 HNAPVLENGYNEEEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 240 ~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~ 270 (279)
- ++|.++ +++|+| |+|.
T Consensus 345 t-----sTGAAk-------Av~kVL--P~L~ 361 (477)
T PRK08289 345 T-----ETGAAK-------AVAKAL--PELA 361 (477)
T ss_pred c-----CCChhh-------hhhhcc--cccC
Confidence 4 455554 888888 4454
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=173.07 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=130.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cceeee-CCceeEEeecCc-cCCCCCcEEEecCCCchhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSF-QDKAYTVEELTE-DSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~~~~~-~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~ 115 (279)
+|||||| +|.+|+.++..+.+. +.+++..+.++... +..... .+......+.+. -.-.++|+||+|+|+..+.
T Consensus 2 lrVAIIG-~G~IG~~h~~~ll~~--~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~ 78 (285)
T TIGR03215 2 VKVAIIG-SGNIGTDLMYKLLRS--EHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA 78 (285)
T ss_pred cEEEEEe-CcHHHHHHHHHHHhC--CCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH
Confidence 7999999 599999997777665 78899988765332 211111 111222222221 0113689999999999999
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEE
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVS 195 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vt 195 (279)
+++.+++++|+.|||+++.+ .+||++|+||.+++.... +.++|+||||.++.++.+|+++++...+ .+++
T Consensus 79 e~a~~al~aGk~VIdekPa~----~~plvvp~VN~~~~~~~~----~~~iv~c~~~atip~~~al~r~~d~~~~--~iv~ 148 (285)
T TIGR03215 79 RHARLLAELGKIVIDLTPAA----IGPYVVPAVNLDEHLDAP----NVNMVTCGGQATIPIVAAISRVAPVHYA--EIVA 148 (285)
T ss_pred HHHHHHHHcCCEEEECCccc----cCCccCCCcCHHHHhcCc----CCCEEEcCcHHHHHHHHHHHHhhccccE--EEEE
Confidence 99999999999999999998 479999999998877532 5799999999999999999999987644 6788
Q ss_pred Eeeccc-cc-ChhhHHHHHHHHHHHh
Q 023678 196 TYQAAS-GA-GAAAMEELELQTREVL 219 (279)
Q Consensus 196 t~q~vS-Ga-G~~~~~El~~qt~~l~ 219 (279)
||++.| |+ ||.+++||.+||...+
T Consensus 149 ti~s~S~g~g~r~~idel~~~t~~~~ 174 (285)
T TIGR03215 149 SIASRSAGPGTRANIDEFTETTSRAL 174 (285)
T ss_pred EEEeeccCCCchhHHHHHHHHHHHHH
Confidence 899999 58 5999999999998854
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-20 Score=159.55 Aligned_cols=94 Identities=40% Similarity=0.541 Sum_probs=89.1
Q ss_pred hhchhhh-cCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCC--ChHHHHhH
Q 023678 180 ATPLHRR-AKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG--YNEEEMKM 256 (279)
Q Consensus 180 L~PL~~~-~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g--~t~eE~k~ 256 (279)
|+||+++ +++++|+|+||||+|||||+|++||++|+..+++|++.+...|+.+++||++||++++...+ +++||+++
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 7899997 88899999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHhcCCCCccEEee
Q 023678 257 VKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 257 ~~E~~kil~~~~~~v~~~ 274 (279)
..|.+|+++... .|++|
T Consensus 81 ~~~~~~~l~~~~-~v~~t 97 (184)
T PF02774_consen 81 IAETRKILGFPP-RVSFT 97 (184)
T ss_dssp HHHHHHHCTETT-EEEEE
T ss_pred hccccceeeccc-ccccc
Confidence 999999999877 66655
|
It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A .... |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=129.44 Aligned_cols=112 Identities=46% Similarity=0.644 Sum_probs=86.7
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee-cCCCCceeeeCCce---eEEeecCccCC--CCCcEEEecCCCchh
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS-KRSAGKQLSFQDKA---YTVEELTEDSF--DGVDIALFSAGGSIS 114 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s-~~s~G~~~~~~~~~---~~v~~~d~~~~--~~~DvVf~a~g~~~s 114 (279)
|++|+|++|++|+.+++.|.++ |.+++..+.+ +++.|+...+.+.. ..+.+.+.+.+ .++|+||+|++.+..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~--~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~ 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS 78 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC--CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH
Confidence 6899999999999999999988 8888888844 44666655433221 11223333334 379999999999988
Q ss_pred hhhHH---HHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 115 KKFGP---IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 115 ~~~~~---~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
.+.+. +.++.|+.|||+|+++|++++++|++||+|+++++
T Consensus 79 ~~~~~~~~~~~~~g~~viD~s~~~~~~~~~~~~~~~~n~~~~~ 121 (122)
T smart00859 79 KEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred HHHHHHHHhhhcCCCEEEECCccccCCCCceEEcCccCHHHhc
Confidence 88543 34579999999999999999999999999998775
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=143.97 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=119.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCC--CCceEEEEEeecC-CC-------------Cc---eee---------------
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRD--FPYRSIKMLASKR-SA-------------GK---QLS--------------- 83 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~--~p~~~l~~l~s~~-s~-------------G~---~~~--------------- 83 (279)
.++||||.| .|.+||.++|.+.+++ .+.++++++.... .. |+ .+.
T Consensus 2 m~ikVgING-FGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 2 APIKVGING-FGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLV 80 (361)
T ss_pred CceEEEEEC-cChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEE
Confidence 457999999 8999999999987642 1578988887521 11 11 111
Q ss_pred eCCceeEE--eecCcc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccc
Q 023678 84 FQDKAYTV--EELTED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157 (279)
Q Consensus 84 ~~~~~~~v--~~~d~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~ 157 (279)
..++.+.+ .+-|+. .|. ++|+|+.|+|...+++.+..++++|++-|=+|++. +++.+.+|.+||++.++..
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~--~d~~~t~V~GVN~~~y~~~- 157 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPA--SGGAKTIVMGVNQHEYSPT- 157 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCC--CCCCceEEEcCChHHcCcc-
Confidence 12233443 233433 354 89999999999999999999999999644478874 3334779999999998620
Q ss_pred cCCCCCcEEECCCChHHHHHHhhhch-hhhcCccEEEEEEeecccc
Q 023678 158 VGMGKGALIANPNCSTIICLMAATPL-HRRAKVTRMVVSTYQAASG 202 (279)
Q Consensus 158 ~~~~~~~iVanPgC~tt~l~laL~PL-~~~~~i~~v~vtt~q~vSG 202 (279)
..+||||.+|+|+++++.++.| ++.|+|++..+||+|++++
T Consensus 158 ----~~~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~ 199 (361)
T PTZ00434 158 ----EHHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTA 199 (361)
T ss_pred ----cCcEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccC
Confidence 2579999999999999999999 7999999999999999996
|
|
| >COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=139.69 Aligned_cols=155 Identities=20% Similarity=0.229 Sum_probs=121.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecC------------C-CCc----------eeeeCCceeEEe-e
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKR------------S-AGK----------QLSFQDKAYTVE-E 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~------------s-~G~----------~~~~~~~~~~v~-~ 93 (279)
++||||.| .|.+||.++|.+.++ + +++++.+..-. + -|+ .+.+.+..+.+. .
T Consensus 1 ~ikV~ING-fGrIGR~v~ra~~~~--~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~ 77 (335)
T COG0057 1 MIKVAING-FGRIGRLVARAALER--DGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAE 77 (335)
T ss_pred CcEEEEec-CcHHHHHHHHHHHhC--CCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEec
Confidence 47999999 899999999999988 6 79999886511 1 111 112233344443 2
Q ss_pred cCccC--CC--CCcEEEecCCCchhhhhHHHHHhC-CCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEEC
Q 023678 94 LTEDS--FD--GVDIALFSAGGSISKKFGPIAVEK-GSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIAN 168 (279)
Q Consensus 94 ~d~~~--~~--~~DvVf~a~g~~~s~~~~~~~~~a-G~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVan 168 (279)
.+++. |. ++|+|+.|+|-..+++.+++++++ |++-|=.|++- .++++.++-.+|.+.+.. +..+|+|
T Consensus 78 ~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~--~~~~~~vv~gvn~~~~~~------~~~iVsn 149 (335)
T COG0057 78 RDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG--KDDVATVVYGVNHNYYDA------GHTIVSN 149 (335)
T ss_pred CChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC--CCCccEEEEeccccccCC------CCcEEEE
Confidence 33332 43 589999999999999999999888 58655578875 334789999999988874 5789999
Q ss_pred CCChHHHHHHhhhchhhhcCccEEEEEEeecccccC
Q 023678 169 PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAG 204 (279)
Q Consensus 169 PgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG 204 (279)
.+|+|+|+++.+++|+++|+|+++.+||.+++++--
T Consensus 150 aSCTTNcLap~~kvl~d~fGI~~g~mTtVh~~T~dQ 185 (335)
T COG0057 150 ASCTTNCLAPVAKVLNDAFGIEKGLMTTVHAYTNDQ 185 (335)
T ss_pred ccchhhhhHHHHHHHHHhcCeeEEEEEEEEcccCCC
Confidence 999999999999999999999999999999998754
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-12 Score=119.54 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=110.2
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---------Cceee--eCCceeEEee------cCc-cCCCCCc
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---------GKQLS--FQDKAYTVEE------LTE-DSFDGVD 103 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---------G~~~~--~~~~~~~v~~------~d~-~~~~~~D 103 (279)
|||+| .|.+|+.+++.+.++ |.++++++...... |.... +......+.+ -+. +.+.++|
T Consensus 1 VaInG-~GrIGr~varav~~~--~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vD 77 (333)
T TIGR01546 1 VGVNG-YGTIGKRVADAVTKQ--DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVD 77 (333)
T ss_pred CEEEC-CcHHHHHHHHHHhhC--CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCC
Confidence 68999 699999999998876 89999998763221 00000 0000111111 011 1246899
Q ss_pred EEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhch
Q 023678 104 IALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPL 183 (279)
Q Consensus 104 vVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL 183 (279)
+|+.|+|.....+.++.+.+.|++.|=.|+... +...+.++.++|.+.+.. ..+|+|.+|+|++++..+++|
T Consensus 78 iVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~-~~~~~tfv~gvN~~~~~~-------~~~vs~aSCtTn~Lap~~~~L 149 (333)
T TIGR01546 78 IVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA-EVADVSFVAQANYEAALG-------KDYVRVVSCNTTGLVRTLNAI 149 (333)
T ss_pred EEEECCCCCCChhhHHHHHhCCcCEEEECCCCC-CCCCceEEeeeCHHHcCc-------CceEEecCchHhhHHHHHHHH
Confidence 999999999999999999999997666888743 111256899999998862 349999999999999999999
Q ss_pred hhhcCccEEEEEEeec
Q 023678 184 HRRAKVTRMVVSTYQA 199 (279)
Q Consensus 184 ~~~~~i~~v~vtt~q~ 199 (279)
++.|||+++.+||.+.
T Consensus 150 ~~~fGI~~~~~Ttvh~ 165 (333)
T TIGR01546 150 NDYSKVDKVRAVMVRR 165 (333)
T ss_pred HHhcCeEEEEEEEEee
Confidence 9999999999999995
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-12 Score=112.28 Aligned_cols=169 Identities=21% Similarity=0.278 Sum_probs=120.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe--ecCCCCceeee-CCceeEEee----cCccCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA--SKRSAGKQLSF-QDKAYTVEE----LTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~--s~~s~G~~~~~-~~~~~~v~~----~d~~~~~~~DvVf~a~g~ 111 (279)
+.||+|+| +|.+|..|+-.+++|+ ...+..+.. ...+.|..... -+....-+. +...+|.+.|+||.++..
T Consensus 4 k~kvaiig-sgni~tdlm~k~lr~g-~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa 81 (310)
T COG4569 4 KRKVAIIG-SGNIGTDLMIKILRHG-QHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSA 81 (310)
T ss_pred cceEEEEc-cCcccHHHHHHHHhcC-CcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEecccc
Confidence 47999999 8999999998888886 344555443 23444421111 011111111 223457789999999999
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccE
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTR 191 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~ 191 (279)
+..++.+++++++|++.||++++- -.||++|-+|.++-.+.+ +.++|.|.|..++.++.+...+.+...- .
T Consensus 82 ~~h~~~a~~~ae~gi~~idltpaa----igp~vvp~~n~~eh~~a~----nvnmvtcggqatipiv~avsrvv~v~ya-e 152 (310)
T COG4569 82 GAHVKNAAALAEAGIRLIDLTPAA----IGPYVVPVVNLEEHVDAL----NVNMVTCGGQATIPIVAAVSRVVRVHYA-E 152 (310)
T ss_pred chhhcchHhHHhcCCceeecchhc----cCCeeccccchHHhcCCC----CcceEeecCcccchhhhhhhhheehhHH-H
Confidence 999999999999999999999874 469999999987644322 7899999999999999988765442211 2
Q ss_pred EEEEEeeccc-ccC-hhhHHHHHHHHHHHh
Q 023678 192 MVVSTYQAAS-GAG-AAAMEELELQTREVL 219 (279)
Q Consensus 192 v~vtt~q~vS-GaG-~~~~~El~~qt~~l~ 219 (279)
+ |.++.+.| |.| |..++|+.+.|++..
T Consensus 153 i-vasias~sagpgtranideftettsr~i 181 (310)
T COG4569 153 I-VASIASKSAGPGTRANIDEFTETTSRAI 181 (310)
T ss_pred H-HHHHhhccCCCCcccchHhhhhhhHHHH
Confidence 2 23334444 888 888999999998754
|
|
| >PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=95.68 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=87.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-CCCc----------------eee-------eCCceeEEe-ec
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGK----------------QLS-------FQDKAYTVE-EL 94 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s~G~----------------~~~-------~~~~~~~v~-~~ 94 (279)
+||+|.| .|.+||.++|.+..+ |.++++++.... +... .+. ..+..+.+. +.
T Consensus 1 ikVgING-fGRIGR~v~r~~~~~--~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGING-FGRIGRLVLRAALDQ--PDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEES-TSHHHHHHHHHHHTS--TTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTS
T ss_pred CEEEEEC-CCcccHHHHHhhccc--ceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhh
Confidence 5899999 899999999999987 999999997654 2110 111 112233333 23
Q ss_pred CccC--C--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 95 TEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 95 d~~~--~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
+++. | .++|+|+.|+|...+++.++.++++|++-|=+|++.- ++..+.++.++|.+.+.. +..+|+|.+
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~-~~~~~t~V~GvN~~~~~~------~~~iIS~aS 150 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSK-DDADPTFVMGVNHDDYDP------EHHIISNAS 150 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-S-SSSSEEE-TTTSGGGGTT------TTSEEEE--
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeeccccc-cccCCeEEeeccHHHhCC------CCCEEEccC
Confidence 3333 4 3899999999999999999999999996554888763 223689999999999874 348999999
Q ss_pred C
Q 023678 171 C 171 (279)
Q Consensus 171 C 171 (279)
|
T Consensus 151 C 151 (151)
T PF00044_consen 151 C 151 (151)
T ss_dssp H
T ss_pred C
Confidence 8
|
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O .... |
| >smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.2e-09 Score=87.47 Aligned_cols=121 Identities=20% Similarity=0.307 Sum_probs=85.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-------------Cc---eeee-------CCceeEEe-ecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK---QLSF-------QDKAYTVE-ELT 95 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-------------G~---~~~~-------~~~~~~v~-~~d 95 (279)
+||+|+|+ |.+|+.+++.+.++ +.++++.+.+..+. |+ .+.+ .+..+.+. +-+
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCC
Confidence 58999996 99999999999877 88999888653211 11 0110 11222222 122
Q ss_pred cc--CC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 96 ED--SF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 96 ~~--~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
+. .| .++|+|+.|+|...+++-+..++++|++-|=.|++. +++.+.+|.++|.+.+.. +..+|+|.+|
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~--~~~~~t~V~GvN~~~~~~------~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPA--KDADKTFVYGVNHDEYDP------EDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCC--CCCCceEEEeechHHcCC------CCCEEEcCCC
Confidence 22 24 378999999999999998989999999655588875 233347899999999873 3559999999
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. |
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.5e-07 Score=77.70 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=73.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCC---ceeEEeecC--ccCCCCCcEEEecCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD---KAYTVEELT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~---~~~~v~~~d--~~~~~~~DvVf~a~g~ 111 (279)
|.++.+.|+||||.+|+.|++++.+. |.+.-+.+..||..-.+-.... ...++..++ ..++.+.|+.|||+|+
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~--~~FSKV~~i~RR~~~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgT 93 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEA--PQFSKVYAILRRELPDPATDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGT 93 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhc--ccceeEEEEEeccCCCccccceeeeEEechHHHHHHHhhhcCCceEEEeecc
Confidence 55678999999999999999999998 7775554434443211111111 111222222 2456799999999986
Q ss_pred chh---------------hhhHHHHHhCCCEEEE-cCCCCCCCCCCceeec----cCCHHhhhccccCCCCCcEEECCC
Q 023678 112 SIS---------------KKFGPIAVEKGSIVVD-NSSAFRMVENVPLVIP----EVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 112 ~~s---------------~~~~~~~~~aG~~VID-lS~~~R~~~~vplvvP----evN~~~i~~~~~~~~~~~iVanPg 170 (279)
+.. .+.++.+.+.||+-+- +|+.- -|++-.+..| ||.++.+.. + -+..+|--||
T Consensus 94 TRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~G-Ad~sSrFlY~k~KGEvE~~v~eL-~---F~~~~i~RPG 167 (238)
T KOG4039|consen 94 TRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAG-ADPSSRFLYMKMKGEVERDVIEL-D---FKHIIILRPG 167 (238)
T ss_pred cccccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccC-CCcccceeeeeccchhhhhhhhc-c---ccEEEEecCc
Confidence 543 4455666789996332 33322 2333333333 555554432 0 1456676775
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.5e-07 Score=72.62 Aligned_cols=94 Identities=16% Similarity=0.231 Sum_probs=66.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC---CCceeee----CCceeEEeecCccCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF----QDKAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s---~G~~~~~----~~~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
|||+|+|++|..|+.+++.+.++ +.++++....++. .|+.+.. ....+.+.+--.+.+..+|+++.++.++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCChH
Confidence 68999999999999999999998 9999998877655 4554432 1112223221022345699999999999
Q ss_pred hhhhhHHHHHhCCCEEEEcCCCC
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
...++++.+++.|+.+|--+.-|
T Consensus 79 ~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp HHHHHHHHHHHHT-EEEEE-SSS
T ss_pred HhHHHHHHHHhCCCCEEEECCCC
Confidence 99999999999999888666555
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-06 Score=81.49 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=66.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEee-cCc-cCCCCCcEEEecCCCchh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTE-DSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~-~d~-~~~~~~DvVf~a~g~~~s 114 (279)
|+++||+|+| +|.+|+.+++.+.++ |.++++.+.+++..++ ... ...+.. .+. +...++|+|+.|+|+...
T Consensus 1 M~kIRVgIVG-~GnIGr~~a~al~~~--pd~ELVgV~dr~~~~~-~~~---~~~v~~~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 1 MSKIRAAIVG-YGNLGRSVEKAIQQQ--PDMELVGVFSRRGAET-LDT---ETPVYAVADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred CCCcEEEEEe-ecHHHHHHHHHHHhC--CCcEEEEEEcCCcHHH-Hhh---cCCccccCCHHHhccCCCEEEEcCCCccC
Confidence 4569999999 799999999999887 9999999877764222 111 111111 121 223679999999999988
Q ss_pred hhhHHHHHhCCCEEEEcC
Q 023678 115 KKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 115 ~~~~~~~~~aG~~VIDlS 132 (279)
.+.+..++++|..|||-.
T Consensus 74 ~~~~~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 74 IPEQAPYFAQFANTVDSF 91 (324)
T ss_pred HHHHHHHHHcCCCEEECC
Confidence 899999999999999864
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.4e-06 Score=76.25 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=65.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
++||+|+|++|.+|+.+++.+.++ +.++++.+.++...... ......+.+ .+++ +.+.++|+|+.++++....++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~~~~~~~-~~~~~~i~~~~dl~-~ll~~~DvVid~t~p~~~~~~ 76 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDRPGSPLV-GQGALGVAITDDLE-AVLADADVLIDFTTPEATLEN 76 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCcccc-ccCCCCccccCCHH-HhccCCCEEEECCCHHHHHHH
Confidence 479999999999999999999877 88999987765432111 011111111 1211 123478999989888888999
Q ss_pred HHHHHhCCCEEEEcCCCC
Q 023678 118 GPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~ 135 (279)
+..++++|+.||--+..|
T Consensus 77 ~~~al~~G~~vvigttG~ 94 (257)
T PRK00048 77 LEFALEHGKPLVIGTTGF 94 (257)
T ss_pred HHHHHHcCCCEEEECCCC
Confidence 999999999888544344
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=70.26 Aligned_cols=99 Identities=21% Similarity=0.323 Sum_probs=60.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCc---eeEEeecCc--cCCCCCcEEEecCCCchh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK---AYTVEELTE--DSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~---~~~v~~~d~--~~~~~~DvVf~a~g~~~s 114 (279)
||||||||||.+|.++++....|||. +.+++ |++.+.-.+.+. +-++.+++. +++.+.|+||+|.+...+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHe---VTAiv--Rn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~ 75 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHE---VTAIV--RNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGAS 75 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCe---eEEEE--eChHhccccccceeecccccChhhhHhhhcCCceEEEeccCCCC
Confidence 69999999999999999999999885 44554 233332111111 122333333 567899999999876522
Q ss_pred h--h--------hHHHHHhCCC---EEEEcCCCCCCCCCCce
Q 023678 115 K--K--------FGPIAVEKGS---IVVDNSSAFRMVENVPL 143 (279)
Q Consensus 115 ~--~--------~~~~~~~aG~---~VIDlS~~~R~~~~vpl 143 (279)
- + +...+..+|. .||--.+.+-++++..+
T Consensus 76 ~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rL 117 (211)
T COG2910 76 DNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRL 117 (211)
T ss_pred ChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCcee
Confidence 1 1 2222233466 36665566655665433
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.7e-06 Score=77.47 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=64.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--eeeC-CceeEEeecCccCCCCCcEEEecCCCch
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LSFQ-DKAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~~~-~~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
|+++||+||| .|.+|+.+.+.|.+. ++.++++.+.++.. .+. .... +....+.+++ +.+.++|+|+.|+++..
T Consensus 4 m~~irIGIIG-~G~IG~~~a~~L~~~-~~~~el~aV~dr~~-~~a~~~a~~~g~~~~~~~~e-ell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 4 RPELRVAIAG-LGAIGKAIAQALDRG-LPGLTLSAVAVRDP-QRHADFIWGLRRPPPVVPLD-QLATHADIVVEAAPASV 79 (271)
T ss_pred CCeeEEEEEC-ccHHHHHHHHHHHhc-CCCeEEEEEECCCH-HHHHHHHHhcCCCcccCCHH-HHhcCCCEEEECCCcHH
Confidence 5678999999 799999999998762 37788887766532 111 1100 1001112222 12357899999999999
Q ss_pred hhhhHHHHHhCCCEEEEcC
Q 023678 114 SKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 114 s~~~~~~~~~aG~~VIDlS 132 (279)
..++...++++|+.||..|
T Consensus 80 h~e~~~~aL~aGk~Vi~~s 98 (271)
T PRK13302 80 LRAIVEPVLAAGKKAIVLS 98 (271)
T ss_pred HHHHHHHHHHcCCcEEEec
Confidence 9999999999999888654
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.9e-06 Score=74.33 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=63.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEE-eecCccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTV-EELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
|+||+|+|+ |.+|+.+++.|.+. |..++..+..++....... .......+ .+++.- -.++|+|+.|+++....+
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~--~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~DvVve~t~~~~~~e 76 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHD--PDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL-PQRPDLVVECAGHAALKE 76 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhC--CCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh-ccCCCEEEECCCHHHHHH
Confidence 479999996 99999999999887 8888887764332211111 00011222 222211 246899999999999999
Q ss_pred hHHHHHhCCCEEEEcCC
Q 023678 117 FGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~ 133 (279)
++.+++++|+.|+..+.
T Consensus 77 ~~~~aL~aGk~Vvi~s~ 93 (265)
T PRK13303 77 HVVPILKAGIDCAVISV 93 (265)
T ss_pred HHHHHHHcCCCEEEeCh
Confidence 99999999998886654
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=72.76 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=67.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---Cceeee-CC---ceeEE-eecCccCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GKQLSF-QD---KAYTV-EELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---G~~~~~-~~---~~~~v-~~~d~~~~~~~DvVf~a~g 110 (279)
++||+|+|++|..|+.+++.+.++ |.++++.+.++... ++.... .+ ..+.+ .+++.- ...+|+|+.|++
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l-~~~~DvVIdfT~ 77 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAV-ETDPDVLIDFTT 77 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHh-cCCCCEEEECCC
Confidence 379999999999999999999887 99999988764321 222111 00 11222 222111 245899999999
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
+....+++..++++|+.||--+..|
T Consensus 78 p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 78 PEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred hHHHHHHHHHHHHCCCCEEEECCCC
Confidence 9999999999999999888666554
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.9e-05 Score=66.82 Aligned_cols=87 Identities=25% Similarity=0.297 Sum_probs=55.6
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC---c----cCCCCCcEEEecCCCc--
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---E----DSFDGVDIALFSAGGS-- 112 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d---~----~~~~~~DvVf~a~g~~-- 112 (279)
|+|+||||++|+.+++.|.+++ .++.++. |+.. +... ...+.+...| . ..+.++|+||++.++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~-R~~~-~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALV-RSPS-KAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEE-SSGG-GHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEe-cCch-hccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 7899999999999999999984 5777775 3322 1111 2233333322 2 2356999999999843
Q ss_pred ---hhhhhHHHHHhCCC-EEEEcCCCC
Q 023678 113 ---ISKKFGPIAVEKGS-IVVDNSSAF 135 (279)
Q Consensus 113 ---~s~~~~~~~~~aG~-~VIDlS~~~ 135 (279)
..+.+.+.+.++|+ ++|-+|+..
T Consensus 74 ~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 74 DVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred cccccccccccccccccccceeeeccc
Confidence 34455555567788 455555544
|
... |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.1e-05 Score=71.95 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=53.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecC-c----cCCCCCcEEEecCCCch
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-E----DSFDGVDIALFSAGGSI 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g~~~ 113 (279)
|||.|.||||++|+.|++.|.+++| +++.+. |+... ..+...+.++...|+. + ..+.++|+||.+.+...
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~---~V~~l~-R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~ 76 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY---QVRCLV-RNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRP 76 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC---eEEEEE-cChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCC
Confidence 4899999999999999999998865 555564 32211 1111112222222332 2 23578999999875321
Q ss_pred -------------hhhhHHHHHhCCC-EEEEcCC
Q 023678 114 -------------SKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 114 -------------s~~~~~~~~~aG~-~VIDlS~ 133 (279)
+..+++.+.++|+ ++|=.|+
T Consensus 77 ~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 77 SDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 1334555667887 4555555
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.7e-05 Score=67.96 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=67.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---Cceee----eCCceeEEeecCccCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GKQLS----FQDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---G~~~~----~~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
+|||+|+||+|..|+++++.+.+. |..+++....+... |+... .....+.+.+.......++|+++.-+-+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTP 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC--CCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCc
Confidence 689999999999999999999998 89999876655432 11110 0111223332111224578999999999
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCC
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
..+.++++.+++.|...|--+.-|
T Consensus 80 ~~~~~~l~~~~~~~~~lVIGTTGf 103 (266)
T COG0289 80 EATLENLEFALEHGKPLVIGTTGF 103 (266)
T ss_pred hhhHHHHHHHHHcCCCeEEECCCC
Confidence 999999999999998655455555
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.9e-06 Score=62.37 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=58.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecC-ccCCCCCcEEEecCCCchhhhhH
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
||+||| +|..|..|++.|.++++...++..+.+++.... .+.... ...+...+ .+.++.+|+||+|++.....+.+
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~advvilav~p~~~~~v~ 78 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY-GVQATADDNEEAAQEADVVILAVKPQQLPEVL 78 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC-TTEEESEEHHHHHHHTSEEEE-S-GGGHHHHH
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh-ccccccCChHHhhccCCEEEEEECHHHHHHHH
Confidence 799998 799999999999998764556655544432111 111111 11222211 23345789999999999888888
Q ss_pred HHH--HhCCCEEEEcCC
Q 023678 119 PIA--VEKGSIVVDNSS 133 (279)
Q Consensus 119 ~~~--~~aG~~VIDlS~ 133 (279)
..+ ...|..+||..+
T Consensus 79 ~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 79 SEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHHHHTTSEEEEEST
T ss_pred HHHhhccCCCEEEEeCC
Confidence 776 668899999865
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=64.93 Aligned_cols=173 Identities=14% Similarity=0.103 Sum_probs=93.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceE-EEEEeecCCCCc--eeeeCCceeEEeecCccCCCCCcEEEecCCCch
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRS-IKMLASKRSAGK--QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~-l~~l~s~~s~G~--~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
|+.+||+||| +|.+|+.+.+.|.++++...+ +... .++...+ .+.... .+.+.....+.+.++|+||.|++...
T Consensus 2 m~~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~DiViiavp~~~ 78 (245)
T PRK07634 2 LKKHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVS-NRSNVEKLDQLQARY-NVSTTTDWKQHVTSVDTIVLAMPPSA 78 (245)
T ss_pred CCCCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEE-CCCCHHHHHHHHHHc-CcEEeCChHHHHhcCCEEEEecCHHH
Confidence 4468999999 699999999998877544444 3333 3322111 111100 12222111123467999999999988
Q ss_pred hhhhHHHHHh--CCCEEEEcCCCCCCCC---C------CceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhc
Q 023678 114 SKKFGPIAVE--KGSIVVDNSSAFRMVE---N------VPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATP 182 (279)
Q Consensus 114 s~~~~~~~~~--aG~~VIDlS~~~R~~~---~------vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~P 182 (279)
.++....+.. .+..||+.++.+..+. . +....|....+.-. ....+..+.+..-...-.+..
T Consensus 79 ~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~-------g~~~~~~~~~~~~~~~~~v~~ 151 (245)
T PRK07634 79 HEELLAELSPLLSNQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGK-------SISLYTMGQSVNETHKETLQL 151 (245)
T ss_pred HHHHHHHHHhhccCCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhc-------CCeEEeeCCCCCHHHHHHHHH
Confidence 8887776542 3567888888775431 0 11234533332222 223333333333233333444
Q ss_pred hhhhcCc----cEEEEEEeecccccChhhHHHHHHHHHHHh
Q 023678 183 LHRRAKV----TRMVVSTYQAASGAGAAAMEELELQTREVL 219 (279)
Q Consensus 183 L~~~~~i----~~v~vtt~q~vSGaG~~~~~El~~qt~~l~ 219 (279)
|++..+- +.=..+.+++++|.|=+-+-.+.+...+++
T Consensus 152 lf~~~G~~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~ 192 (245)
T PRK07634 152 ILKGIGTSQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEAT 192 (245)
T ss_pred HHHhCCCEEEECHHHcchHHhhhcchHHHHHHHHHHHHHHH
Confidence 4444332 111356788888888666555555555543
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00018 Score=66.09 Aligned_cols=170 Identities=11% Similarity=0.168 Sum_probs=96.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCceee-eCC-ceeEEeecCccCCCCCcEEEecCCCch
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLS-FQD-KAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~~~~-~~~-~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
|+.|||++|| .|..|+.+++.|.+++ ++..++... .|+ ..+... +.. ....+.+-..+...++|+||+|++...
T Consensus 1 ~~~mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v~v~-~r~-~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~ 77 (279)
T PRK07679 1 MSIQNISFLG-AGSIAEAIIGGLLHANVVKGEQITVS-NRS-NETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKD 77 (279)
T ss_pred CCCCEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEE-CCC-CHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHH
Confidence 4557999999 7999999999998874 222344433 332 211111 100 012222111123467899999999988
Q ss_pred hhhhHHHHH---hCCCEEEEcCCCCCCC-------CCCc--eeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhh
Q 023678 114 SKKFGPIAV---EKGSIVVDNSSAFRMV-------ENVP--LVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAAT 181 (279)
Q Consensus 114 s~~~~~~~~---~aG~~VIDlS~~~R~~-------~~vp--lvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~ 181 (279)
..+.+..+. ..|..|||..+....+ .+.| ..+|-++...-.. -..++.+.++.... .-.+.
T Consensus 78 ~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~------~t~~~~~~~~~~~~-~~~v~ 150 (279)
T PRK07679 78 VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKS------ATAISPSKHATAEH-IQTAK 150 (279)
T ss_pred HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcc------cEEEeeCCCCCHHH-HHHHH
Confidence 877776664 3577899986555443 1122 2344333322221 12333445554333 34567
Q ss_pred chhhhcCccEEEE------EEeecccccChhhHHHHHHHHHHH
Q 023678 182 PLHRRAKVTRMVV------STYQAASGAGAAAMEELELQTREV 218 (279)
Q Consensus 182 PL~~~~~i~~v~v------tt~q~vSGaG~~~~~El~~qt~~l 218 (279)
+|++.++- +++ .+..+.+|+|-.-+-.+.+.+.++
T Consensus 151 ~l~~~~G~--~~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~ 191 (279)
T PRK07679 151 ALFETIGL--VSVVEEEDMHAVTALSGSGPAYIYYVVEAMEKA 191 (279)
T ss_pred HHHHhCCc--EEEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHH
Confidence 78777653 333 667889999977665555555544
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.1e-05 Score=69.59 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=62.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC-CceeE-EeecCccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-DKAYT-VEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~-~~~~~-v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
||||+||| .|.+|+.+++.|.+.+ +.++++.+.+++. .+...+. ..... +.+++ +.+.++|+|+.|+++....+
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~-~~~elv~v~d~~~-~~a~~~a~~~~~~~~~~~~-ell~~~DvVvi~a~~~~~~~ 76 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGR-INAELYAFYDRNL-EKAENLASKTGAKACLSID-ELVEDVDLVVECASVNAVEE 76 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCC-CCeEEEEEECCCH-HHHHHHHHhcCCeeECCHH-HHhcCCCEEEEcCChHHHHH
Confidence 47999999 6999999999988752 2678777765432 1111110 00111 22222 12367999999999999999
Q ss_pred hHHHHHhCCCEEEEcCC
Q 023678 117 FGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~ 133 (279)
++..++++|+.||..|.
T Consensus 77 ~~~~al~~Gk~Vvv~s~ 93 (265)
T PRK13304 77 VVPKSLENGKDVIIMSV 93 (265)
T ss_pred HHHHHHHcCCCEEEEch
Confidence 99999999998887654
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00012 Score=65.08 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=65.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CCceeEEeecC-ccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~ 116 (279)
||+++|+| ||.+|..|.++|...+| ++. +.++|...+.-.. ......+...+ .+....+|+||+++|-.....
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~---eV~-igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~ 75 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH---EVI-IGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD 75 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC---eEE-EecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh
Confidence 46788888 89999999999988654 433 4445443321110 00111122222 234567999999999887777
Q ss_pred hHHHHHh--CCCEEEEcCCCC--CCCCCCceeeccCC
Q 023678 117 FGPIAVE--KGSIVVDNSSAF--RMVENVPLVIPEVN 149 (279)
Q Consensus 117 ~~~~~~~--aG~~VIDlS~~~--R~~~~vplvvPevN 149 (279)
....+.+ .|..|||.+-+. ...+..-|++|+=.
T Consensus 76 v~~~l~~~~~~KIvID~tnp~~~~~~~~~~~~~~~~~ 112 (211)
T COG2085 76 VLAELRDALGGKIVIDATNPIEVNGEPGDLYLVPSEG 112 (211)
T ss_pred HHHHHHHHhCCeEEEecCCCccccCCccccccCCCCC
Confidence 7776653 478999998864 22333334445433
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00012 Score=67.29 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=65.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.+||+||| -|.+|+.+.+.|.....+.++++.+..+. ..+...+....-.+.+++.......|+|+.|.++..-++++
T Consensus 2 ~~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~-~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNA-ADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHA 79 (267)
T ss_pred ceEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCC-HHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHHHHHHH
Confidence 47999999 69999999999876544668888885443 22211111111112223221125789999999999999999
Q ss_pred HHHHhCCCEEEEcC-CCC
Q 023678 119 PIAVEKGSIVVDNS-SAF 135 (279)
Q Consensus 119 ~~~~~aG~~VIDlS-~~~ 135 (279)
++.+++|+-++=+| ++|
T Consensus 80 ~~iL~~g~dlvv~SvGAL 97 (267)
T PRK13301 80 EGCLTAGLDMIICSAGAL 97 (267)
T ss_pred HHHHhcCCCEEEEChhHh
Confidence 99999999766666 555
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00015 Score=69.45 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=55.5
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee--CCceeEEeecC---cc----CCCCCcEEEecCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QDKAYTVEELT---ED----SFDGVDIALFSAGG 111 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~--~~~~~~v~~~d---~~----~~~~~DvVf~a~g~ 111 (279)
|.|+|+ |++|+.+++.|.++ +..+-+.+++|+... +.+.. ....+....+| .+ .++++|+|+.|+|.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~--~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARR--GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCT--TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcC--CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999 99999999999988 555233444443211 11111 12233333332 11 24789999999999
Q ss_pred chhhhhHHHHHhCCCEEEEcC
Q 023678 112 SISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS 132 (279)
......+..++++|+..||.|
T Consensus 78 ~~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 78 FFGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp GGHHHHHHHHHHHT-EEEESS
T ss_pred chhHHHHHHHHHhCCCeeccc
Confidence 889999999999999999944
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=6.7e-05 Score=61.76 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=55.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.+||+|||| |.||..|.+.|.+.+| .+..+.+|+....... .......+.++ .+.+..+|++|+|++.+.-.+.
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag~---~v~~v~srs~~sa~~a~~~~~~~~~~~~-~~~~~~aDlv~iavpDdaI~~v 84 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAGH---EVVGVYSRSPASAERAAAFIGAGAILDL-EEILRDADLVFIAVPDDAIAEV 84 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTTS---EEEEESSCHH-HHHHHHC--TT-----T-TGGGCC-SEEEE-S-CCHHHHH
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCCC---eEEEEEeCCccccccccccccccccccc-ccccccCCEEEEEechHHHHHH
Confidence 589999995 9999999999998765 4566766543222111 11112223332 2335689999999999988898
Q ss_pred HHHHHhC-----CCEEEEcCCCCC
Q 023678 118 GPIAVEK-----GSIVVDNSSAFR 136 (279)
Q Consensus 118 ~~~~~~a-----G~~VIDlS~~~R 136 (279)
++.+.+. |-.|+=.|+.+-
T Consensus 85 a~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 85 AEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp HHHHHCC--S-TT-EEEES-SS--
T ss_pred HHHHHHhccCCCCcEEEECCCCCh
Confidence 8888765 667888887763
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.54 E-value=6.9e-05 Score=59.37 Aligned_cols=86 Identities=17% Similarity=0.283 Sum_probs=60.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eee-eCCceeEEeecCccCC--CCCcEEEecCCCchhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLS-FQDKAYTVEELTEDSF--DGVDIALFSAGGSISK 115 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~-~~~~~~~v~~~d~~~~--~~~DvVf~a~g~~~s~ 115 (279)
+||+|||+ |..|+..++.+.++ .+.++++.+.+++.... ... ..+.. .+.+++ +.+ .++|+|+.|+++....
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~-~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~~~~~-~ll~~~~~D~V~I~tp~~~h~ 76 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRS-SPDFEVVAVCDPDPERAEAFAEKYGIP-VYTDLE-ELLADEDVDAVIIATPPSSHA 76 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHT-TTTEEEEEEECSSHHHHHHHHHHTTSE-EESSHH-HHHHHTTESEEEEESSGGGHH
T ss_pred CEEEEECC-cHHHHHHHHHHHhc-CCCcEEEEEEeCCHHHHHHHHHHhccc-chhHHH-HHHHhhcCCEEEEecCCcchH
Confidence 58999995 99999999887665 27889998876543211 110 01112 233322 112 3799999999999999
Q ss_pred hhHHHHHhCCCEEE
Q 023678 116 KFGPIAVEKGSIVV 129 (279)
Q Consensus 116 ~~~~~~~~aG~~VI 129 (279)
+++.+++++|..|+
T Consensus 77 ~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 77 EIAKKALEAGKHVL 90 (120)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCEEE
Confidence 99999999999776
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00022 Score=64.82 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=51.8
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCcee-eeCCceeEEeecC--ccCC------CC-CcEEEecCC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL-SFQDKAYTVEELT--EDSF------DG-VDIALFSAG 110 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~-~~~~~~~~v~~~d--~~~~------~~-~DvVf~a~g 110 (279)
+|.|+||||++|+.+++.|.+++|+ +.++ +|+...... .......++.+.+ ...+ .+ +|.+|++.+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~---V~~~-~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~ 76 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVP---FLVA-SRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAP 76 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCc---EEEE-eCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCC
Confidence 4899999999999999999987653 4455 333221110 0000111122211 0112 56 999999887
Q ss_pred Cc-----hhhhhHHHHHhCCC-EEEEcCC
Q 023678 111 GS-----ISKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 111 ~~-----~s~~~~~~~~~aG~-~VIDlS~ 133 (279)
.. ....+++.+.++|+ ++|=+|+
T Consensus 77 ~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 77 PIPDLAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred CCCChhHHHHHHHHHHHHcCCCEEEEeec
Confidence 43 23455666778898 3554554
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00022 Score=76.54 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=64.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceE------------EEEEeecCCC-Cceeee--CC---ceeEEeecC-c-c
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRS------------IKMLASKRSA-GKQLSF--QD---KAYTVEELT-E-D 97 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~------------l~~l~s~~s~-G~~~~~--~~---~~~~v~~~d-~-~ 97 (279)
++.||+|+|| |++|+..++.|.++ |.++ ++.++++... .+.+.. .+ ..+++.+.+ . +
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~ 644 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLK 644 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhC--cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHH
Confidence 3679999996 99999999999887 6655 5566654321 111111 11 112222221 1 1
Q ss_pred CCCCCcEEEecCCCchhhhhHHHHHhCCCEEEEcC
Q 023678 98 SFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 98 ~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS 132 (279)
.++++|+|++|+|.....+.+..++++|+.++|.+
T Consensus 645 ~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 645 YVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred hhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 23679999999999999999999999999999987
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00027 Score=66.78 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=59.5
Q ss_pred CCEEEEECcCcHHHHH-HHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC--CCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~e-Ll~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~--~~~DvVf~a~g~~~s~ 115 (279)
++||+||| +|.+|+. .++.+... |.++++++.++...-..-.+.+. ..+.+++ +.+ .++|+|+.|+|+....
T Consensus 4 ~irvgiiG-~G~i~~~~~~~~~~~~--~~~~l~av~d~~~~~~~~~~~~~-~~~~~~~-ell~~~~vD~V~I~tp~~~H~ 78 (346)
T PRK11579 4 KIRVGLIG-YGYASKTFHAPLIAGT--PGLELAAVSSSDATKVKADWPTV-TVVSEPQ-HLFNDPNIDLIVIPTPNDTHF 78 (346)
T ss_pred cceEEEEC-CCHHHHHHHHHHHhhC--CCCEEEEEECCCHHHHHhhCCCC-ceeCCHH-HHhcCCCCCEEEEcCCcHHHH
Confidence 48999999 6999985 56777666 88999988765421100001111 1122322 122 4689999999999999
Q ss_pred hhHHHHHhCCCEEE
Q 023678 116 KFGPIAVEKGSIVV 129 (279)
Q Consensus 116 ~~~~~~~~aG~~VI 129 (279)
+++.+++++|+.|+
T Consensus 79 ~~~~~al~aGkhVl 92 (346)
T PRK11579 79 PLAKAALEAGKHVV 92 (346)
T ss_pred HHHHHHHHCCCeEE
Confidence 99999999999877
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00064 Score=62.66 Aligned_cols=169 Identities=12% Similarity=0.107 Sum_probs=95.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCC-CceEEEEEeecCCCCceeee-CCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGKQLSF-QDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~-p~~~l~~l~s~~s~G~~~~~-~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+||++|| .|..|+.+++.|.++++ +..++... ++ +..+.-.. ........+...+...++|+||+|++.....++
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~~~I~v~-~r-~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~v 79 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVSPDQIICS-DL-NVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSV 79 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCCCceEEEE-CC-CHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHH
Confidence 4799999 79999999999988765 33344433 32 22221100 000122222112234678999999999887777
Q ss_pred HHHHH---hCCCEEEEcCCCCCCCC---------CCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhh
Q 023678 118 GPIAV---EKGSIVVDNSSAFRMVE---------NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHR 185 (279)
Q Consensus 118 ~~~~~---~aG~~VIDlS~~~R~~~---------~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~ 185 (279)
++.+. +.+..|||.-+...++. .+.-++|.++-..-.. -..+..+++++...... +.-|++
T Consensus 80 l~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g------~t~~~~~~~~~~~~~~~-v~~lf~ 152 (272)
T PRK12491 80 INQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEG------MSALCFNEMVTEKDIKE-VLNIFN 152 (272)
T ss_pred HHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCc------eEEEEeCCCCCHHHHHH-HHHHHH
Confidence 76653 45789999988876542 1223466655433221 12233445554433222 222333
Q ss_pred hcC-c---cEEEEEEeecccccChhhHHHHHHHHHHH
Q 023678 186 RAK-V---TRMVVSTYQAASGAGAAAMEELELQTREV 218 (279)
Q Consensus 186 ~~~-i---~~v~vtt~q~vSGaG~~~~~El~~qt~~l 218 (279)
..+ + +.=.+++++++||.|=+-+-.+.+.+.++
T Consensus 153 ~~G~~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a 189 (272)
T PRK12491 153 IFGQTEVVNEKLMDVVTSISGSSPAYVYMFIEAMADA 189 (272)
T ss_pred cCCCEEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH
Confidence 333 2 22247889999999966555555555444
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00026 Score=68.52 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=63.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecC---c----cCCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELT---E----DSFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d---~----~~~~~~DvVf~a~ 109 (279)
|+||.|+|| |.||+.+...|+++ .+.++ .+++|.... ..+.. .+..+....+| . +.+++.|+|+.|+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~--~d~~V-~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQN--GDGEV-TIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhC--CCceE-EEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 579999997 99999999999988 44564 344553211 11111 11122222222 1 2356789999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcCCC
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
|..+....++.++++|+.++|.|-.
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccC
Confidence 9999999999999999999998754
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00043 Score=67.99 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=56.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--e--eeCCceeEEeecC--ccCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--L--SFQDKAYTVEELT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~--~~~~~~~~v~~~d--~~~~~~~DvVf~a~g~ 111 (279)
+.+||.|.||||++|+.|++.|.++++ +++.+. +...+.. . .+....+.+.+.| ...+.++|+||.+.+.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~---~V~~ld-~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD---SVIVVD-NFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC---EEEEEe-CCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEEeeee
Confidence 458999999999999999999998865 444442 2211111 0 0111123332222 2234578999988752
Q ss_pred ch------------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 112 SI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 112 ~~------------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
.. +..+++.+.+.|+++|=.|+..
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~ 235 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 235 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChH
Confidence 10 1334555567888888777764
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00016 Score=68.93 Aligned_cols=139 Identities=17% Similarity=0.221 Sum_probs=78.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCcee---EEeecCccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAY---TVEELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~---~v~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
..+|.|+||+|.+|+++.+.|.++. ...++..+. |. ..+..... .++ .+.+++ +.+.++|+||.+++.....
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~-gv~~lilv~-R~-~~rl~~La-~el~~~~i~~l~-~~l~~aDiVv~~ts~~~~~ 229 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKT-GVAELLLVA-RQ-QERLQELQ-AELGGGKILSLE-EALPEADIVVWVASMPKGV 229 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhC-CCCEEEEEc-CC-HHHHHHHH-HHhccccHHhHH-HHHccCCEEEECCcCCcCC
Confidence 5789999999999999999997541 233555553 32 11111110 011 111221 3456899999999875443
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCc----eeec----------cCCHHhhhccccCCCCCcEE--ECCCChHHHHHHh
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVP----LVIP----------EVNPEAMSGIKVGMGKGALI--ANPNCSTIICLMA 179 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vp----lvvP----------evN~~~i~~~~~~~~~~~iV--anPgC~tt~l~la 179 (279)
..-+..++.++.|||++=+--.++++. +++. +++-..+-. .+.- ....|.+=.|+|+
T Consensus 230 ~I~~~~l~~~~~viDiAvPRDVd~~v~~~~V~v~~gG~V~~p~~vd~~l~~~v~-------~~~~~r~~~Ac~AEtiiL~ 302 (340)
T PRK14982 230 EIDPETLKKPCLMIDGGYPKNLDTKVQGPGIHVLKGGIVEHSLDIDWKIMEIAE-------MDNPQRQMFACFAEAMLLE 302 (340)
T ss_pred cCCHHHhCCCeEEEEecCCCCCCcccCCCCEEEEeCCccccCCCcCccHHHHHh-------ccchhhHHHHHHHHHHHHH
Confidence 233345578999999987644444331 1111 111111100 0111 1456888889999
Q ss_pred hhchhhhcCc
Q 023678 180 ATPLHRRAKV 189 (279)
Q Consensus 180 L~PL~~~~~i 189 (279)
|-..++.|-+
T Consensus 303 leg~~~~fS~ 312 (340)
T PRK14982 303 FEGCHTNFSW 312 (340)
T ss_pred hcCCccCCCc
Confidence 9888777644
|
|
| >KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=7.5e-05 Score=68.44 Aligned_cols=94 Identities=21% Similarity=0.226 Sum_probs=78.5
Q ss_pred CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhh
Q 023678 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180 (279)
Q Consensus 101 ~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL 180 (279)
++|.+...+|...+.+.+..+.+.|++.+-.|+.- .|.|..+..||.+.... ...+|+|..|++.++++-.
T Consensus 74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps---~dapmfv~gVn~~~y~~------~~~iiSnascttnclaPla 144 (285)
T KOG0657|consen 74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPS---ADAPMFVMGVNGEKYDN------SLDIISNASCTTNCLAPLA 144 (285)
T ss_pred cceeEeeccccccccccccccccccceEEEecccc---CCCCccccccccccccc------ccceeechhhhhccccchh
Confidence 78999999999999999999889999755555542 35789999999998874 3458999999999988888
Q ss_pred hchhhhcCccEEEEEEeeccccc
Q 023678 181 TPLHRRAKVTRMVVSTYQAASGA 203 (279)
Q Consensus 181 ~PL~~~~~i~~v~vtt~q~vSGa 203 (279)
+-++++|+|....++|.++++.-
T Consensus 145 KVi~d~fgI~EgLMtTvha~tat 167 (285)
T KOG0657|consen 145 KVIHDNFGIMEGLMTTVHAITAT 167 (285)
T ss_pred heeccccccccccccceeeeccc
Confidence 99999999988888888877653
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00041 Score=67.85 Aligned_cols=91 Identities=21% Similarity=0.260 Sum_probs=59.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC-------CCceEEEEEeecCCCCceeeeCCceeEEeecCccC-C--CCCcEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIAL 106 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~-------~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~-~--~~~DvVf 106 (279)
|+++||+|+| .|.||+.+++.|.++. -..++++.+.+++.. +..........+.+ +.++ + .++|+|+
T Consensus 1 m~~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~-~~~~~~~~~~~~~~-d~~~ll~d~~iDvVv 77 (426)
T PRK06349 1 MKPLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE-KDRGVDLPGILLTT-DPEELVNDPDIDIVV 77 (426)
T ss_pred CCeEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh-hccCCCCcccceeC-CHHHHhhCCCCCEEE
Confidence 4568999999 8999999999987651 025788877765421 11111101111111 1111 2 3689999
Q ss_pred ecCCC-chhhhhHHHHHhCCCEEEE
Q 023678 107 FSAGG-SISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 107 ~a~g~-~~s~~~~~~~~~aG~~VID 130 (279)
.|++. +.+.++..+++++|..||-
T Consensus 78 e~tg~~~~~~~~~~~aL~~GkhVVt 102 (426)
T PRK06349 78 ELMGGIEPARELILKALEAGKHVVT 102 (426)
T ss_pred ECCCCchHHHHHHHHHHHCCCeEEE
Confidence 99865 5678899999999999983
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0002 Score=66.68 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=61.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCCCC-ceeee-CCceeEEeecCcc-CCCCCcEEEecCCCc
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAG-KQLSF-QDKAYTVEELTED-SFDGVDIALFSAGGS 112 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~-~~~~~DvVf~a~g~~ 112 (279)
|+++||||||+.|+.+...+..+.+. +. ++++.+.+++... +.... .+....+.+++.- ...++|+|+.|+|+.
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~--~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAAL--GGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhC--CCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 46799999997678888899888876 55 6888886654321 11110 0111122222211 113589999999999
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
...+++.+++++|+.|+
T Consensus 79 ~H~e~~~~AL~aGkhVl 95 (342)
T COG0673 79 LHAELALAALEAGKHVL 95 (342)
T ss_pred hhHHHHHHHHhcCCEEE
Confidence 99999999999999887
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0003 Score=62.12 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=49.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~ 119 (279)
|||+|||++|..|+-+.+.+.+.||+.. +.++|+||+|+|-....++++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------~~~~DlVilavPv~~~~~~i~ 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------------IKKADHAFLSVPIDAALNYIE 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------------ECCCCEEEEeCCHHHHHHHHH
Confidence 5899999999999999999987755421 246899999999998888887
Q ss_pred HHHhCCCEEEEcCCC
Q 023678 120 IAVEKGSIVVDNSSA 134 (279)
Q Consensus 120 ~~~~aG~~VIDlS~~ 134 (279)
+.. ..|+|.+|-
T Consensus 50 ~~~---~~v~Dv~Sv 61 (197)
T PRK06444 50 SYD---NNFVEISSV 61 (197)
T ss_pred HhC---CeEEecccc
Confidence 764 258899885
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0001 Score=65.07 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=53.6
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC---ceeeeCCceeEEeecC-c----cCCCCCcEEEecCCCc-
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG---KQLSFQDKAYTVEELT-E----DSFDGVDIALFSAGGS- 112 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G---~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g~~- 112 (279)
|+|+||||.+|+.+++.|... .+++.++. |.... +.+...+..+...+++ . ..+.++|.||++++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~---~~~V~~l~-R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA---GFSVRALV-RDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TGCEEEEE-SSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHhC---CCCcEEEE-eccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 789999999999999999985 44566664 33211 1112223333323443 2 2368999999999933
Q ss_pred -----hhhhhHHHHHhCCCEEE
Q 023678 113 -----ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 -----~s~~~~~~~~~aG~~VI 129 (279)
....++..+.++|++-+
T Consensus 77 ~~~~~~~~~li~Aa~~agVk~~ 98 (233)
T PF05368_consen 77 PSELEQQKNLIDAAKAAGVKHF 98 (233)
T ss_dssp CCHHHHHHHHHHHHHHHT-SEE
T ss_pred hhhhhhhhhHHHhhhccccceE
Confidence 44667777788998533
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00089 Score=68.79 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=61.0
Q ss_pred CCCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--eeeCCceeEEeecC-c--
Q 023678 22 PRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LSFQDKAYTVEELT-E-- 96 (279)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~~~~~~~~v~~~d-~-- 96 (279)
-..||.|+..+ ++||.|.||||++|+.|++.|.++ ...+++.+. +.+.... ......++...|+. .
T Consensus 304 ~~~~~~~~~~~------~~~VLVTGatGFIGs~Lv~~Ll~~--~g~~V~~l~-r~~~~~~~~~~~~~~~~~~gDl~d~~~ 374 (660)
T PRK08125 304 LNSKPACSAKR------RTRVLILGVNGFIGNHLTERLLRD--DNYEVYGLD-IGSDAISRFLGHPRFHFVEGDISIHSE 374 (660)
T ss_pred ecccchhhhhc------CCEEEEECCCchHHHHHHHHHHhC--CCcEEEEEe-CCchhhhhhcCCCceEEEeccccCcHH
Confidence 46788888776 678999999999999999999875 234666663 3221111 11011112122331 1
Q ss_pred ---cCCCCCcEEEecCCCch------------------hhhhHHHHHhCCCEEEEcCCC
Q 023678 97 ---DSFDGVDIALFSAGGSI------------------SKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 97 ---~~~~~~DvVf~a~g~~~------------------s~~~~~~~~~aG~~VIDlS~~ 134 (279)
..+.++|+||-+++... +...+..+.+.|.++|=.|+.
T Consensus 375 ~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~ 433 (660)
T PRK08125 375 WIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTS 433 (660)
T ss_pred HHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcch
Confidence 12468999997654211 122334445677777766664
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00035 Score=67.18 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=56.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.++|+|+|++|.+|+.+.+.|.+++|+ +..+ +++.. .+. .+.+.++|+||.|+|.....+.+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~---V~~~-d~~~~-------------~~~-~~~~~~aDlVilavP~~~~~~~~ 159 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQ---VRIL-EQDDW-------------DRA-EDILADAGMVIVSVPIHLTEEVI 159 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCe---EEEe-CCCcc-------------hhH-HHHHhcCCEEEEeCcHHHHHHHH
Confidence 478999999999999999999987653 3333 33210 010 12346799999999998877777
Q ss_pred HHHH--hCCCEEEEcCCC
Q 023678 119 PIAV--EKGSIVVDNSSA 134 (279)
Q Consensus 119 ~~~~--~aG~~VIDlS~~ 134 (279)
..+. ..|+.|+|++|-
T Consensus 160 ~~l~~l~~~~iv~Dv~Sv 177 (374)
T PRK11199 160 ARLPPLPEDCILVDLTSV 177 (374)
T ss_pred HHHhCCCCCcEEEECCCc
Confidence 6653 468999999884
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0017 Score=59.73 Aligned_cols=168 Identities=9% Similarity=0.062 Sum_probs=89.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCc--eeeeCCceeEEeecCccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
|+||+||| .|.+|..+.+.|.+.+ ++..++..+ +++...+ .+........+.....+...++|+||+|+++....
T Consensus 1 m~~I~iIG-~G~mG~ala~~L~~~g~~~~~~V~~~-~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~ 78 (277)
T PRK06928 1 MEKIGFIG-YGSMADMIATKLLETEVATPEEIILY-SSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVL 78 (277)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCCcccEEEE-eCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHH
Confidence 36899999 7999999999998764 223455544 3332111 01000101122111112246789999999998888
Q ss_pred hhHHHHH---hCCCEEEEcCCCCCCCC------C--CceeeccCCHHhhhccccCCCCCcEE-ECCCChHHHHHHhhhch
Q 023678 116 KFGPIAV---EKGSIVVDNSSAFRMVE------N--VPLVIPEVNPEAMSGIKVGMGKGALI-ANPNCSTIICLMAATPL 183 (279)
Q Consensus 116 ~~~~~~~---~aG~~VIDlS~~~R~~~------~--vplvvPevN~~~i~~~~~~~~~~~iV-anPgC~tt~l~laL~PL 183 (279)
+++.++. ..|+.||...+...+++ . +.-++|.+.-..-+ ....+ .+++.+...... +..|
T Consensus 79 ~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g~-------g~t~~~~~~~~~~~~~~~-v~~l 150 (277)
T PRK06928 79 PLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVGV-------GTSLVAHAETVNEANKSR-LEET 150 (277)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHhh-------hcEEEecCCCCCHHHHHH-HHHH
Confidence 8777663 46788888877654431 1 11234444332211 22223 333443332222 2233
Q ss_pred hhhcC----ccEEEEEEeecccccChhhHHHHHHHHH
Q 023678 184 HRRAK----VTRMVVSTYQAASGAGAAAMEELELQTR 216 (279)
Q Consensus 184 ~~~~~----i~~v~vtt~q~vSGaG~~~~~El~~qt~ 216 (279)
+..+| ++.=.++++++.||.|=+-+-.+.+...
T Consensus 151 ~~~~G~~~~v~E~~~d~~tal~gsgPA~~~~~~~al~ 187 (277)
T PRK06928 151 LSHFSHVMTIREENMDIASNLTSSSPGFIAAIFEEFA 187 (277)
T ss_pred HHhCCCEEEEchhhCceeeeeecCHHHHHHHHHHHHH
Confidence 33332 2222467888889888665544444443
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00058 Score=60.59 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=59.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee--------eCCceeEEeecC-ccCCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS--------FQDKAYTVEELT-EDSFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~--------~~~~~~~v~~~d-~~~~~~~DvVf~a~ 109 (279)
|||+|||++|.+|+.|.+.|.+.+| ++... +++... ..+. ..+....+...+ .+...++|+||+|+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~---~V~v~-~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN---KIIIG-SRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC---EEEEE-EcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEEC
Confidence 5899999899999999999998754 44433 443211 0000 001111122112 23356789999999
Q ss_pred CCchhhhhHHHHHh--CCCEEEEcCCCCCCC
Q 023678 110 GGSISKKFGPIAVE--KGSIVVDNSSAFRMV 138 (279)
Q Consensus 110 g~~~s~~~~~~~~~--aG~~VIDlS~~~R~~ 138 (279)
+.....+.++.+.. .+..|||.+..+..+
T Consensus 77 p~~~~~~~l~~l~~~l~~~vvI~~~ngi~~~ 107 (219)
T TIGR01915 77 PWDHVLKTLESLRDELSGKLVISPVVPLASD 107 (219)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEeccCceec
Confidence 99877777665532 457899999887653
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0008 Score=65.97 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=55.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--ee--eCCceeEEeecC--ccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LS--FQDKAYTVEELT--EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~--~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~ 112 (279)
.|||.|.||||+||+.|++.|.++++ +++++. +...+.. .. .....+.+...| ...+.++|+||-++...
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~---~V~~ld-r~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~ViHlAa~~ 195 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD---EVIVID-NFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPA 195 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC---EEEEEe-CCCCccHhHhhhhccCCceEEEECccccccccCCCEEEECceec
Confidence 58999999999999999999998754 555553 2222211 10 011122333222 22346799999987521
Q ss_pred h------------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 113 I------------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 113 ~------------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
. +..++..+.+.|+++|=.|+..
T Consensus 196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~ 236 (436)
T PLN02166 196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSE 236 (436)
T ss_pred cchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHH
Confidence 1 2334445556788877666653
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.004 Score=56.43 Aligned_cols=169 Identities=13% Similarity=0.159 Sum_probs=92.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCC-CceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~-p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|||++|| .|..|..+.+.|.+.+| +..++.....+ +..+.-.+....+.+.....+...++|+||+|++.....+..
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~~~i~v~~~r-~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl 78 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPPSRISTADDS-NPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVL 78 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCcceEEEEeCC-CHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHH
Confidence 5899999 89999999999988765 33344443233 222211111011222211122346789999999887777776
Q ss_pred HHHH---hCCCEEEEcCCCCCCCC------CCce--eeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhc
Q 023678 119 PIAV---EKGSIVVDNSSAFRMVE------NVPL--VIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRA 187 (279)
Q Consensus 119 ~~~~---~aG~~VIDlS~~~R~~~------~vpl--vvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~ 187 (279)
..+. ..|..||+..+....+. ..++ .+|.. +..+.. ....++..+++.... .-.+.+|++..
T Consensus 79 ~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~~-~~~~~~-----~~~~l~~~~~~~~~~-~~~v~~l~~~~ 151 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPNT-PCLVGE-----AASVMSLGPAATADD-RDLVATLFGAV 151 (266)
T ss_pred HHHHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEEEECCCc-HHHHhC-----ceEEEEeCCCCCHHH-HHHHHHHHHhC
Confidence 5553 45777887766544321 0022 13322 222221 023344555555444 34567888776
Q ss_pred CccEEE-----EEEeecccccChhhHHHHHHHHHHH
Q 023678 188 KVTRMV-----VSTYQAASGAGAAAMEELELQTREV 218 (279)
Q Consensus 188 ~i~~v~-----vtt~q~vSGaG~~~~~El~~qt~~l 218 (279)
+- -+. ++.+.+.+|.|-.-+-.+.+.+.++
T Consensus 152 G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea 186 (266)
T PLN02688 152 GK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG 186 (266)
T ss_pred CC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH
Confidence 53 222 2344577888877655555555554
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00027 Score=56.43 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=52.7
Q ss_pred CcHHHHHHHHHHHcCCC-CceEEEEEeecCCCCce--e-eeCCceeEEeecCc-cCCCCCcEEEecCCCchhhhhHHHHH
Q 023678 48 TGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGKQ--L-SFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKFGPIAV 122 (279)
Q Consensus 48 TG~VG~eLl~lL~~~~~-p~~~l~~l~s~~s~G~~--~-~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~~~~~~~~ 122 (279)
.|.||+.++++|.++.- ..+++..+.+++ .... . ..........+++. -...+.|+|+.|++.+...++.++++
T Consensus 2 ~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L 80 (117)
T PF03447_consen 2 FGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKAL 80 (117)
T ss_dssp -SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHHH
Confidence 79999999999988721 168888887765 1100 0 00011112222221 11126899999999999999999999
Q ss_pred hCCCEEEEcC
Q 023678 123 EKGSIVVDNS 132 (279)
Q Consensus 123 ~aG~~VIDlS 132 (279)
++|+-||-.+
T Consensus 81 ~~G~~VVt~n 90 (117)
T PF03447_consen 81 ERGKHVVTAN 90 (117)
T ss_dssp HTTCEEEES-
T ss_pred HCCCeEEEEC
Confidence 9999998544
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00085 Score=64.65 Aligned_cols=82 Identities=21% Similarity=0.197 Sum_probs=58.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|+|||.+|.+|+.+.+.|.+. ...++..+ ++... ...+. .+.+.++|+||+|+|-....++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~--~~~~V~g~-D~~d~-----------~~~~~-~~~v~~aDlVilavPv~~~~~~l 68 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR--MQLEVIGH-DPADP-----------GSLDP-ATLLQRADVLIFSAPIRHTAALI 68 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc--CCCEEEEE-cCCcc-----------ccCCH-HHHhcCCCEEEEeCCHHHHHHHH
Confidence 379999998899999999999865 24454444 22100 00010 12357899999999999998888
Q ss_pred HHHH------hCCCEEEEcCCCC
Q 023678 119 PIAV------EKGSIVVDNSSAF 135 (279)
Q Consensus 119 ~~~~------~aG~~VIDlS~~~ 135 (279)
+++. +.|+.|.|.+|--
T Consensus 69 ~~l~~~~~~l~~~~iVtDVgSvK 91 (370)
T PRK08818 69 EEYVALAGGRAAGQLWLDVTSIK 91 (370)
T ss_pred HHHhhhhcCCCCCeEEEECCCCc
Confidence 8764 5799999999853
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=61.74 Aligned_cols=89 Identities=12% Similarity=0.183 Sum_probs=56.9
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccC-C-CCCcEEEecCCCchh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F-DGVDIALFSAGGSIS 114 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~-~-~~~DvVf~a~g~~~s 114 (279)
+++++|+||| .|.+|+.+.+.|.+.+ .++..+. ++.. ...... ..+... .+.++ . .++|+||.|++....
T Consensus 34 ~~~~kI~IIG-~G~mG~slA~~L~~~G---~~V~~~d-~~~~-~~~a~~-~gv~~~-~~~~e~~~~~aDvVilavp~~~~ 105 (304)
T PLN02256 34 SRKLKIGIVG-FGNFGQFLAKTFVKQG---HTVLATS-RSDY-SDIAAE-LGVSFF-RDPDDFCEEHPDVVLLCTSILST 105 (304)
T ss_pred CCCCEEEEEe-eCHHHHHHHHHHHhCC---CEEEEEE-CccH-HHHHHH-cCCeee-CCHHHHhhCCCCEEEEecCHHHH
Confidence 3467999999 7999999999998764 3555443 3321 111100 011111 11111 2 368999999999887
Q ss_pred hhhHHHH----HhCCCEEEEcCC
Q 023678 115 KKFGPIA----VEKGSIVVDNSS 133 (279)
Q Consensus 115 ~~~~~~~----~~aG~~VIDlS~ 133 (279)
.++..++ +..|+.|+|.++
T Consensus 106 ~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 106 EAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred HHHHHhhhhhccCCCCEEEecCC
Confidence 7777765 346889999998
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.001 Score=61.39 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=105.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCceeeeC-CceeEEeecCc-cCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQ-DKAYTVEELTE-DSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~~~~~~-~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~ 115 (279)
++||++|| .|..|+.+++-|.+++ .+..++.. +.++..+..... .-.... ..+. +....+|+||+|.-+....
T Consensus 1 ~~~IgfIG-~G~Mg~Ai~~gl~~~g~~~~~~I~v--~~~~~e~~~~l~~~~g~~~-~~~~~~~~~~advv~LavKPq~~~ 76 (266)
T COG0345 1 MMKIGFIG-AGNMGEAILSGLLKSGALPPEEIIV--TNRSEEKRAALAAEYGVVT-TTDNQEAVEEADVVFLAVKPQDLE 76 (266)
T ss_pred CceEEEEc-cCHHHHHHHHHHHhcCCCCcceEEE--eCCCHHHHHHHHHHcCCcc-cCcHHHHHhhCCEEEEEeChHhHH
Confidence 47899999 6999999999999885 44445433 333333221110 001111 2222 2346799999999998888
Q ss_pred hhHHHHHh--CCCEEEEcCCCCCCCC------CCc--eeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhh
Q 023678 116 KFGPIAVE--KGSIVVDNSSAFRMVE------NVP--LVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHR 185 (279)
Q Consensus 116 ~~~~~~~~--aG~~VIDlS~~~R~~~------~vp--lvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~ 185 (279)
+...++.. .+..||...+..+.+. +.+ =++|..+...-+. -..+..+.+|+......+..-|-.
T Consensus 77 ~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g------~t~i~~~~~~~~~~~~~v~~l~~~ 150 (266)
T COG0345 77 EVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAG------VTAISANANVSEEDKAFVEALLSA 150 (266)
T ss_pred HHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCc------ceeeecCccCCHHHHHHHHHHHHh
Confidence 88887753 7778999888766542 222 3567766544432 245666788887776555433322
Q ss_pred hcC---ccEEEEEEeecccccChhhHHHHHHHHHHH
Q 023678 186 RAK---VTRMVVSTYQAASGAGAAAMEELELQTREV 218 (279)
Q Consensus 186 ~~~---i~~v~vtt~q~vSGaG~~~~~El~~qt~~l 218 (279)
-+. |+.-.++++.++||.|=+-+--+.+.+.+.
T Consensus 151 ~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~a 186 (266)
T COG0345 151 VGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADA 186 (266)
T ss_pred cCCeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222 333468999999999977665555555444
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00044 Score=63.56 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=55.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|||+||| .|.+|+.+.+.|.+++| ++..+ +++.... .....+ .......+.+...++|+||+|++.....+..
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~---~V~~~-d~~~~~~~~a~~~g-~~~~~~~~~~~~~~aDlVilavp~~~~~~~~ 74 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH---TVYGV-SRRESTCERAIERG-LVDEASTDLSLLKDCDLVILALPIGLLLPPS 74 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC---EEEEE-ECCHHHHHHHHHCC-CcccccCCHhHhcCCCEEEEcCCHHHHHHHH
Confidence 4899999 79999999999988754 44444 3321110 000011 0111111122356899999999988776766
Q ss_pred HHHH---hCCCEEEEcCCC
Q 023678 119 PIAV---EKGSIVVDNSSA 134 (279)
Q Consensus 119 ~~~~---~aG~~VIDlS~~ 134 (279)
+++. ..++.|+|.++-
T Consensus 75 ~~l~~~l~~~~ii~d~~Sv 93 (279)
T PRK07417 75 EQLIPALPPEAIVTDVGSV 93 (279)
T ss_pred HHHHHhCCCCcEEEeCcch
Confidence 6554 457889998764
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00078 Score=62.50 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=59.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee--CCceeEE-eecCccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTV-EELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~--~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
+++|+|+| .|.+|+.+.+.|.++++ ... .+...++.+..... .+..... .+.......++|+||.|+|-..+.
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~-~v~--i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~ 78 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGL-VVR--IIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATE 78 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCC-eEE--EEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHH
Confidence 57899999 89999999999988754 222 23222222211110 0100111 111123345789999999999888
Q ss_pred hhHHHHH---hCCCEEEEcCCCC
Q 023678 116 KFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 116 ~~~~~~~---~aG~~VIDlS~~~ 135 (279)
+++.++. +.|+.|.|.+|.-
T Consensus 79 ~~l~~l~~~l~~g~iv~Dv~S~K 101 (279)
T COG0287 79 EVLKELAPHLKKGAIVTDVGSVK 101 (279)
T ss_pred HHHHHhcccCCCCCEEEeccccc
Confidence 8887775 5899999999864
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00066 Score=64.53 Aligned_cols=91 Identities=19% Similarity=0.280 Sum_probs=57.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC------C-CceEEEEEeecCC-----CCceee----eC--CceeE-Ee----ecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD------F-PYRSIKMLASKRS-----AGKQLS----FQ--DKAYT-VE----ELT 95 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~------~-p~~~l~~l~s~~s-----~G~~~~----~~--~~~~~-v~----~~d 95 (279)
.+||+|+| .|.||+.+++.|.++. + ..++++.+++++. .|.... +. ...+. +. ..+
T Consensus 2 ~i~V~IiG-~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIG-FGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred eEEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 47999999 6999999999997651 0 2678888876431 121111 00 00000 00 011
Q ss_pred ccC-C--CCCcEEEecCCCc-----hhhhhHHHHHhCCCEEEE
Q 023678 96 EDS-F--DGVDIALFSAGGS-----ISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 96 ~~~-~--~~~DvVf~a~g~~-----~s~~~~~~~~~aG~~VID 130 (279)
.++ + .++|+|+.|+++. .+.+++..++++|+.||-
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 111 2 3689999999864 357888999999999984
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00073 Score=60.79 Aligned_cols=147 Identities=21% Similarity=0.267 Sum_probs=88.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee--eCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS--FQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~--~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
++|+||| -|.+|..+++++.+.. -.++++++..++..- +.+. +... .+.++|. ...+.|+++.|.++...++
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~-~~~e~v~v~D~~~ek~~~~~~~~~~~--~~s~ide-~~~~~DlvVEaAS~~Av~e 75 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGR-VDFELVAVYDRDEEKAKELEASVGRR--CVSDIDE-LIAEVDLVVEAASPEAVRE 75 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCC-cceeEEEEecCCHHHHHHHHhhcCCC--ccccHHH-HhhccceeeeeCCHHHHHH
Confidence 5899999 5999999999987642 357888776543211 1111 1111 1233332 2378999999999999999
Q ss_pred hHHHHHhCCCEEEEcC-CCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEE
Q 023678 117 FGPIAVEKGSIVVDNS-SAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVS 195 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS-~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vt 195 (279)
++++++++|+-||-+| +++- |++. -|=-.+..+. .++++..-+| ++.-+=+|+.+ +.++|+.|..+
T Consensus 76 ~~~~~L~~g~d~iV~SVGALa-d~~l----~erl~~lak~-----~~~rv~~pSG--AiGGlD~l~aa-r~g~i~~V~lt 142 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALA-DEGL----RERLRELAKC-----GGARVYLPSG--AIGGLDALAAA-RVGGIEEVVLT 142 (255)
T ss_pred HhHHHHhcCCCEEEEechhcc-ChHH----HHHHHHHHhc-----CCcEEEecCc--cchhHHHHHHh-hcCCeeEEEEE
Confidence 9999999999655444 3442 3221 1111111111 1345554444 44444455443 33678999999
Q ss_pred EeecccccC
Q 023678 196 TYQAASGAG 204 (279)
Q Consensus 196 t~q~vSGaG 204 (279)
|.-....-|
T Consensus 143 trKpp~~lg 151 (255)
T COG1712 143 TRKPPAELG 151 (255)
T ss_pred eecChHHhC
Confidence 887776444
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0028 Score=60.38 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=26.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.|||.|.||||++|+.|++.|.+++ ..+++.+.
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~ 46 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTET--PHKVLALD 46 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcC--CCEEEEEe
Confidence 4689999999999999999998872 23566553
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00068 Score=61.51 Aligned_cols=95 Identities=9% Similarity=0.162 Sum_probs=58.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
|+||+||| .|.+|..+.+.|.+.+++..++..+ +++... +.+.... .+.+.+...+...++|+||.|++....+++
T Consensus 2 mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v~v~-~r~~~~~~~~~~~~-g~~~~~~~~~~~~~advVil~v~~~~~~~v 78 (267)
T PRK11880 2 MKKIGFIG-GGNMASAIIGGLLASGVPAKDIIVS-DPSPEKRAALAEEY-GVRAATDNQEAAQEADVVVLAVKPQVMEEV 78 (267)
T ss_pred CCEEEEEe-chHHHHHHHHHHHhCCCCcceEEEE-cCCHHHHHHHHHhc-CCeecCChHHHHhcCCEEEEEcCHHHHHHH
Confidence 57899999 6999999999988765433444333 433211 1111100 122221112234678999999999888888
Q ss_pred HHHHHhC-CCEEEEcCCCCC
Q 023678 118 GPIAVEK-GSIVVDNSSAFR 136 (279)
Q Consensus 118 ~~~~~~a-G~~VIDlS~~~R 136 (279)
++.+... +..||.+++...
T Consensus 79 ~~~l~~~~~~~vvs~~~gi~ 98 (267)
T PRK11880 79 LSELKGQLDKLVVSIAAGVT 98 (267)
T ss_pred HHHHHhhcCCEEEEecCCCC
Confidence 7776543 567887777654
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0024 Score=59.76 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=52.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEe--ecC-c-----cCCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVE--ELT-E-----DSFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~--~~d-~-----~~~~~~DvVf~a~ 109 (279)
||||.|.||||++|+.|++.|.++ ...+++.+. ++... ..+ .....+.+. |+. . +.+.++|+||.+.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~--~~~~V~~~~-r~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a 76 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILET--TDWEVYGMD-MQTDRLGDL-VNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV 76 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhC--CCCeEEEEe-CcHHHHHHh-ccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence 368999999999999999999875 234566553 22110 001 011123332 321 1 1235789999764
Q ss_pred CCc------------------hhhhhHHHHHhCCCEEEEcCCC
Q 023678 110 GGS------------------ISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 110 g~~------------------~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
... -+..+++.+.+.|.++|=.|+.
T Consensus 77 a~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~ 119 (347)
T PRK11908 77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 119 (347)
T ss_pred ccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 311 0123345555677777767765
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00086 Score=65.87 Aligned_cols=89 Identities=18% Similarity=0.321 Sum_probs=57.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|||+|+|++|.+|+.+.+.|.++++ ++..+ +++... ...... ....+.....+.+.++|+||+|+|.....+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~---~V~v~-~r~~~~~~~~a~~-~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl 75 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF---EVIVT-GRDPKKGKEVAKE-LGVEYANDNIDAAKDADIVIISVPINVTEDVI 75 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC---EEEEE-ECChHHHHHHHHH-cCCeeccCHHHHhccCCEEEEecCHHHHHHHH
Confidence 5899999999999999999988754 44444 332111 111100 01111110112356789999999988777776
Q ss_pred HHHH---hCCCEEEEcCC
Q 023678 119 PIAV---EKGSIVVDNSS 133 (279)
Q Consensus 119 ~~~~---~aG~~VIDlS~ 133 (279)
..+. ..|+.|+|.++
T Consensus 76 ~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 76 KEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred HHHHhhCCCCCEEEEccc
Confidence 6654 47889999997
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0028 Score=58.95 Aligned_cols=127 Identities=11% Similarity=0.040 Sum_probs=83.4
Q ss_pred ccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee--eCCceeEEeecC-cc-CC-----CCCc-
Q 023678 34 SYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--FQDKAYTVEELT-ED-SF-----DGVD- 103 (279)
Q Consensus 34 ~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~--~~~~~~~v~~~d-~~-~~-----~~~D- 103 (279)
+...+.+||+|.||+|..|+++++.+.+ +.++|+....+...|..+. ..+..+.+...+ .+ .+ ...|
T Consensus 6 ~~~~~~i~V~V~Ga~G~MG~~~~~av~~---~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~ 82 (286)
T PLN02775 6 SPPGSAIPIMVNGCTGKMGHAVAEAAVS---AGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNL 82 (286)
T ss_pred CCcCCCCeEEEECCCChHHHHHHHHHhc---CCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCE
Confidence 3334468999999999999999999876 5788887766655554433 222244443111 11 11 2478
Q ss_pred EEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHH
Q 023678 104 IALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICL 177 (279)
Q Consensus 104 vVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~ 177 (279)
+++.-+-+....+++..+++.|+.+|--+.-|- .++++.+... .+..++-.||-+--..+
T Consensus 83 VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~-------------~e~l~~~~~~-~~i~vv~apNfSiGv~l 142 (286)
T PLN02775 83 IVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGD-------------RDRLLKDVEE-SGVYAVIAPQMGKQVVA 142 (286)
T ss_pred EEEECCChHHHHHHHHHHHHCCCCEEEECCCCC-------------HHHHHHHHhc-CCccEEEECcccHHHHH
Confidence 899999999999999999999998776666652 1222221111 14678888987654433
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00094 Score=58.49 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=68.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHH-HcCCCCceEEEEEee--cCCCCceeeeCCceeEEeecC-ccC-C--CCCcEEEecCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVL-SDRDFPYRSIKMLAS--KRSAGKQLSFQDKAYTVEELT-EDS-F--DGVDIALFSAG 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL-~~~~~p~~~l~~l~s--~~s~G~~~~~~~~~~~v~~~d-~~~-~--~~~DvVf~a~g 110 (279)
++.+++|||+ |..|+.|+..- ..+ ..++++.+.. +...|+.+ .++.+.+++ .+. . .++|++++|+|
T Consensus 83 ~~tnviiVG~-GnlG~All~Y~f~~~--~~~~iv~~FDv~~~~VG~~~----~~v~V~~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 83 KTTNVIIVGV-GNLGRALLNYNFSKK--NGMKIVAAFDVDPDKVGTKI----GDVPVYDLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred cceeEEEEcc-ChHHHHHhcCcchhh--cCceEEEEecCCHHHhCccc----CCeeeechHHHHHHHHhcCccEEEEEcc
Confidence 4689999995 99999998763 223 5567776543 23445443 246777765 222 2 38999999999
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCCCCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~~R~~ 138 (279)
...+.+.++.+.++|++-|=+-++-|+.
T Consensus 156 a~~AQ~vad~Lv~aGVkGIlNFtPv~l~ 183 (211)
T COG2344 156 AEHAQEVADRLVKAGVKGILNFTPVRLQ 183 (211)
T ss_pred HHHHHHHHHHHHHcCCceEEeccceEec
Confidence 9999999999999999988666666654
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0036 Score=60.33 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=27.6
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.++++|.|+||||++|+.+++.|.++++ +++.+.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~---~V~~l~ 91 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY---NVVAVA 91 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEE
Confidence 3467999999999999999999998754 455553
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00048 Score=62.43 Aligned_cols=96 Identities=14% Similarity=0.183 Sum_probs=57.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
|||+||| +|.+|+.+++.|.+.++.... +.+.++ +..+ .+........+.+...+...++|+||+|++.....++
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~g~~~~~-i~v~~r-~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~v 77 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTSPADVSE-IIVSPR-NAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEV 77 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCCChhe-EEEECC-CHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHH
Confidence 4799999 899999999999877543223 333333 2211 1111000122221111224578999999998777776
Q ss_pred HHHH-HhCCCEEEEcCCCCCCC
Q 023678 118 GPIA-VEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 118 ~~~~-~~aG~~VIDlS~~~R~~ 138 (279)
++.+ ...|..||+..+....+
T Consensus 78 l~~l~~~~~~~vis~~ag~~~~ 99 (258)
T PRK06476 78 LRALRFRPGQTVISVIAATDRA 99 (258)
T ss_pred HHHhccCCCCEEEEECCCCCHH
Confidence 6554 24677889888776543
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0014 Score=61.00 Aligned_cols=92 Identities=16% Similarity=0.239 Sum_probs=55.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.+||+||| .|.+|..+.+.|.+.++. .++..+ +++..-. .....+....+.....+.+.++|+||.|++.....++
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~g~~-~~V~~~-dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v 82 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRLGLA-GEIVGA-DRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAV 82 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhcCCC-cEEEEE-ECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHH
Confidence 36899999 799999999999877532 244444 3332100 0000110011111112235689999999998776666
Q ss_pred HHHH---HhCCCEEEEcCC
Q 023678 118 GPIA---VEKGSIVVDNSS 133 (279)
Q Consensus 118 ~~~~---~~aG~~VIDlS~ 133 (279)
...+ +..|..|+|.++
T Consensus 83 ~~~l~~~l~~~~iv~dvgs 101 (307)
T PRK07502 83 AAEIAPHLKPGAIVTDVGS 101 (307)
T ss_pred HHHHHhhCCCCCEEEeCcc
Confidence 5544 356888999876
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0016 Score=62.06 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=26.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.+||.|.||||++|+.|++.|.+++| ++..+.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~---~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGH---YIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCC---EEEEEE
Confidence 47999999999999999999998865 455553
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0013 Score=60.30 Aligned_cols=90 Identities=9% Similarity=0.137 Sum_probs=55.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|||+||| .|.+|+.+.+.|.+.+++ .++..+ +++.... .....+...... +..++.++|+||+|++.....+.+
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~g~~-~~v~~~-d~~~~~~~~~~~~g~~~~~~--~~~~~~~aD~Vilavp~~~~~~~~ 75 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEKGLI-SKVYGY-DHNELHLKKALELGLVDEIV--SFEELKKCDVIFLAIPVDAIIEIL 75 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCC-CEEEEE-cCCHHHHHHHHHCCCCcccC--CHHHHhcCCEEEEeCcHHHHHHHH
Confidence 4899999 799999999999887652 344333 3321110 000011000111 222233589999999998887777
Q ss_pred HHHH--hCCCEEEEcCCC
Q 023678 119 PIAV--EKGSIVVDNSSA 134 (279)
Q Consensus 119 ~~~~--~aG~~VIDlS~~ 134 (279)
..+. ..|..|+|.++.
T Consensus 76 ~~l~~l~~~~iv~d~gs~ 93 (275)
T PRK08507 76 PKLLDIKENTTIIDLGST 93 (275)
T ss_pred HHHhccCCCCEEEECccc
Confidence 7664 468899998774
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0014 Score=54.60 Aligned_cols=72 Identities=19% Similarity=0.378 Sum_probs=47.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeee------CCceeEEeecCccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF------QDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~------~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
|||+|+||+|.||..+.-.|...++ ..+++++..... .|..... ......+..-+.+++.++|+|+++.|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l-~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL-ADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT-SSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 6999999999999999999988742 345766643321 1221111 112344444345678899999999875
Q ss_pred c
Q 023678 112 S 112 (279)
Q Consensus 112 ~ 112 (279)
.
T Consensus 80 ~ 80 (141)
T PF00056_consen 80 P 80 (141)
T ss_dssp S
T ss_pred c
Confidence 3
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0066 Score=54.29 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=25.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+++|.|+||||++|+.+++.|.++++ ++.++
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~---~V~~~ 47 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGF---AVKAG 47 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC---EEEEE
Confidence 57999999999999999999988754 44444
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00035 Score=59.19 Aligned_cols=88 Identities=13% Similarity=0.260 Sum_probs=49.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeCCceeEEeecCcc-CCCCCcEEEecCCCchh-h
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-K 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~~~~~~v~~~d~~-~~~~~DvVf~a~g~~~s-~ 115 (279)
|+||++|| .|..|+.+.+.|.+++| ++... .++. .-+.+...+ ....+ ++. ...++|+||.|++...+ +
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~---~v~~~-d~~~~~~~~~~~~g--~~~~~-s~~e~~~~~dvvi~~v~~~~~v~ 72 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGY---EVTVY-DRSPEKAEALAEAG--AEVAD-SPAEAAEQADVVILCVPDDDAVE 72 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT---EEEEE-ESSHHHHHHHHHTT--EEEES-SHHHHHHHBSEEEE-SSSHHHHH
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCC---eEEee-ccchhhhhhhHHhh--hhhhh-hhhhHhhcccceEeecccchhhh
Confidence 57999999 79999999999998765 44444 3321 111111111 22222 222 23578999999998654 3
Q ss_pred hhHHH--H---HhCCCEEEEcCCC
Q 023678 116 KFGPI--A---VEKGSIVVDNSSA 134 (279)
Q Consensus 116 ~~~~~--~---~~aG~~VIDlS~~ 134 (279)
+.... + +..|..+||.|..
T Consensus 73 ~v~~~~~i~~~l~~g~iiid~sT~ 96 (163)
T PF03446_consen 73 AVLFGENILAGLRPGKIIIDMSTI 96 (163)
T ss_dssp HHHHCTTHGGGS-TTEEEEE-SS-
T ss_pred hhhhhhHHhhccccceEEEecCCc
Confidence 44332 2 3568888988875
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0065 Score=57.00 Aligned_cols=71 Identities=23% Similarity=0.394 Sum_probs=44.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc----eeee------CCceeEEee-cCccCCCCCcEEEec
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK----QLSF------QDKAYTVEE-LTEDSFDGVDIALFS 108 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~----~~~~------~~~~~~v~~-~d~~~~~~~DvVf~a 108 (279)
|||+|+||||++|..++..|...++ ..+++++.......+ .... .+....+.. .+.+++.++|+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEe
Confidence 6899999999999999999998843 235666643221111 1111 111122321 123457899999999
Q ss_pred CCC
Q 023678 109 AGG 111 (279)
Q Consensus 109 ~g~ 111 (279)
.|.
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 984
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0079 Score=51.76 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=68.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|+.+++|..+.+.|.+++. ++..+ .|+. .++ .+.+.++|+||+|++... -+
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~---~V~v~-~r~~--------------~~l-~~~l~~aDiVIsat~~~~--ii 101 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNA---TVTVC-HSKT--------------KNL-KEHTKQADIVIVAVGKPG--LV 101 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCC---EEEEE-ECCc--------------hhH-HHHHhhCCEEEEcCCCCc--ee
Confidence 357999999866789999999988742 43333 3321 011 123568999999998754 23
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
-....+.|..|||++.+.-.|....-+...++.+.++.. ...+...||=
T Consensus 102 ~~~~~~~~~viIDla~prdvd~~~~~~~G~~d~~~~~~~-----~~~~~~~pgg 150 (168)
T cd01080 102 KGDMVKPGAVVIDVGINRVPDKSGGKLVGDVDFESAKEK-----ASAITPVPGG 150 (168)
T ss_pred cHHHccCCeEEEEccCCCcccccCCCeeCCcCHHHHHhh-----ccCcCCCCCc
Confidence 344567789999999875333111235667777776642 2344555553
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0028 Score=56.11 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=64.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeeeCCceeEEeecC-ccC-C--CCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSFQDKAYTVEELT-EDS-F--DGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~~~~~~~v~~~d-~~~-~--~~~DvVf~a~g~~ 112 (279)
..+|+|+| .|.+|+.+.+.+... .+.++++.+.+.+. .|+.+ .+ ..+...+ ..+ + .++|+|+.|+|..
T Consensus 84 ~~rV~IIG-aG~iG~~l~~~~~~~-~~g~~ivgv~D~d~~~~~~~i--~g--~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 84 TWNVALVG-AGNLGRALLNYNGFE-KRGFKIVAAFDVDPEKIGTKI--GG--IPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred CcEEEEEC-CCHHHHHHHHhhhcc-cCCcEEEEEEECChhhcCCEe--CC--eEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 46899999 699999999875422 25678888776532 22222 11 2222221 111 2 3699999999999
Q ss_pred hhhhhHHHHHhCCCEEEEcCCCCCCC
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~~R~~ 138 (279)
...++...+.++|++.|.+-.++.++
T Consensus 158 ~~~~i~~~l~~~Gi~~il~~~p~~~~ 183 (213)
T PRK05472 158 AAQEVADRLVEAGIKGILNFAPVRLS 183 (213)
T ss_pred hHHHHHHHHHHcCCCEEeecCceeec
Confidence 99999999999999888776776653
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0018 Score=53.52 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=54.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC-Cc---eeEEeecCccCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-DK---AYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~-~~---~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
..+|+|+|+ |.+|+.+.+.|.+++ ..++..+ +++.. .+..... +. .....+. .+.+.++|+|+.|++...
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g--~~~v~v~-~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG--AAKIVIV-NRTLEKAKALAERFGELGIAIAYLDL-EELLAEADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEE-cCCHHHHHHHHHHHhhcccceeecch-hhccccCCEEEeCcCCCC
Confidence 468999996 999999999998763 2344444 33211 1111100 10 1112221 122578999999999876
Q ss_pred h----hhhHHHHHhCCCEEEEcCCC
Q 023678 114 S----KKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 114 s----~~~~~~~~~aG~~VIDlS~~ 134 (279)
. ..+.....+.|..|+|++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 94 KPGDELPLPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCCHHHcCCCCEEEEcCcC
Confidence 3 23334456789999999764
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.016 Score=52.74 Aligned_cols=163 Identities=11% Similarity=0.112 Sum_probs=86.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
..|||+||| .|..|+.+++.|.++++.. .++... .++ ..+ . .......+.+...++|+||+|++.....+
T Consensus 2 ~~mkI~iIG-~G~mG~ai~~~l~~~~~~~~~~i~~~-~~~-~~~-~-----~~~~~~~~~~~~~~~D~Vilavkp~~~~~ 72 (260)
T PTZ00431 2 ENIRVGFIG-LGKMGSALAYGIENSNIIGKENIYYH-TPS-KKN-T-----PFVYLQSNEELAKTCDIIVLAVKPDLAGK 72 (260)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCCCCCcceEEEE-CCC-hhc-C-----CeEEeCChHHHHHhCCEEEEEeCHHHHHH
Confidence 347999999 6999999999998875322 233333 222 111 1 11111111122457899999999988888
Q ss_pred hHHHHHh---CCCEEEEcCCCCCCCC-------C--CceeeccCCHHhhhccccCCCCCcEEE-CCCChHHHHHHhhhch
Q 023678 117 FGPIAVE---KGSIVVDNSSAFRMVE-------N--VPLVIPEVNPEAMSGIKVGMGKGALIA-NPNCSTIICLMAATPL 183 (279)
Q Consensus 117 ~~~~~~~---aG~~VIDlS~~~R~~~-------~--vplvvPevN~~~i~~~~~~~~~~~iVa-nPgC~tt~l~laL~PL 183 (279)
++..+.. .+..|-|.++ ...+. . +.-.+|... ..+.. ...++. +.++...... .+.-|
T Consensus 73 vl~~i~~~l~~~~iIS~~aG-i~~~~l~~~~~~~~~vvr~mPn~p-~~~g~------g~t~i~~~~~~~~~~~~-~v~~l 143 (260)
T PTZ00431 73 VLLEIKPYLGSKLLISICGG-LNLKTLEEMVGVEAKIVRVMPNTP-SLVGQ------GSLVFCANNNVDSTDKK-KVIDI 143 (260)
T ss_pred HHHHHHhhccCCEEEEEeCC-ccHHHHHHHcCCCCeEEEECCCch-hHhcc------eeEEEEeCCCCCHHHHH-HHHHH
Confidence 8776653 3334445444 32221 0 112344443 22221 222332 2333333322 23334
Q ss_pred hhhcCc-cEE---EEEEeecccccChhhHHHHHHHHHHH
Q 023678 184 HRRAKV-TRM---VVSTYQAASGAGAAAMEELELQTREV 218 (279)
Q Consensus 184 ~~~~~i-~~v---~vtt~q~vSGaG~~~~~El~~qt~~l 218 (279)
++..+. .++ .++++.++||.|=+-+-.+.+.+.++
T Consensus 144 ~~~~G~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~ 182 (260)
T PTZ00431 144 FSACGIIQEIKEKDMDIATAISGCGPAYVFLFIESLIDA 182 (260)
T ss_pred HHhCCcEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHH
Confidence 443332 222 57888999999977665555555544
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0032 Score=65.31 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=54.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc----cCCCCCcEEEecCCCch--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE----DSFDGVDIALFSAGGSI-- 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~----~~~~~~DvVf~a~g~~~-- 113 (279)
|||.|.||||++|+.|++.|.+++| ++..+. +.... ......++...|+.. +.+.++|+||.+.+...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~---~Vi~ld-r~~~~--~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~~~~ 74 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH---TVSGIA-QHPHD--ALDPRVDYVCASLRNPVLQELAGEADAVIHLAPVDTSA 74 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---EEEEEe-CChhh--cccCCceEEEccCCCHHHHHHhcCCCEEEEcCccCccc
Confidence 4899999999999999999988764 445553 22111 000111111112221 12457899999986431
Q ss_pred --------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 114 --------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 114 --------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
+..++..+.+.|+++|=.|+..
T Consensus 75 ~~~vNv~Gt~nLleAA~~~GvRiV~~SS~~ 104 (699)
T PRK12320 75 PGGVGITGLAHVANAAARAGARLLFVSQAA 104 (699)
T ss_pred hhhHHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 2334555667898888777653
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0016 Score=59.63 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=57.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCC-CceEEEEEeecCCCC-ceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~-p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
|+|+||| .|.+|+.+++.|.+.++ +..++. +.+|+... ..+......+.+.....+...++|+||+|++.....++
T Consensus 1 m~I~iIG-~G~mG~ala~~L~~~g~~~~~~v~-v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~v 78 (273)
T PRK07680 1 MNIGFIG-TGNMGTILIEAFLESGAVKPSQLT-ITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPL 78 (273)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEE-EECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHH
Confidence 4799999 69999999999987753 222333 33443211 11110000122221111224678999999998877777
Q ss_pred HHHHH---hCCCEEEEcCCCCC
Q 023678 118 GPIAV---EKGSIVVDNSSAFR 136 (279)
Q Consensus 118 ~~~~~---~aG~~VIDlS~~~R 136 (279)
++.+. ..+..|||+++...
T Consensus 79 l~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 79 LQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred HHHHHhhcCCCCEEEEECCCCC
Confidence 76543 45778999998654
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0039 Score=58.96 Aligned_cols=72 Identities=22% Similarity=0.387 Sum_probs=44.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC----CceEEEEEeecCC----CCceeeeCC------ceeEEeecC-ccCCCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQLSFQD------KAYTVEELT-EDSFDGVD 103 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~----p~~~l~~l~s~~s----~G~~~~~~~------~~~~v~~~d-~~~~~~~D 103 (279)
..||+|+||+|+||+.++..|..++. ...+++++..... .|..+...+ .++.+. -+ .+++.++|
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~-~~~~~~l~~aD 80 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVAT-TDPEEAFKDVD 80 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceec-CCHHHHhCCCC
Confidence 47899999999999999999987632 1137777743221 222221111 011111 12 24578999
Q ss_pred EEEecCCC
Q 023678 104 IALFSAGG 111 (279)
Q Consensus 104 vVf~a~g~ 111 (279)
+||.+.|.
T Consensus 81 iVI~tAG~ 88 (325)
T cd01336 81 VAILVGAM 88 (325)
T ss_pred EEEEeCCc
Confidence 99999875
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0091 Score=56.03 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=63.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..+|+|||.+|.+|+-+..+|.+++ ..+....++.. ++ +....+|+||.|+|... .+
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~g---atVtv~~~~t~-----------------~l~e~~~~ADIVIsavg~~~--~v 216 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAH---CSVTVVHSRST-----------------DAKALCRQADIVVAAVGRPR--LI 216 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC---CEEEEECCCCC-----------------CHHHHHhcCCEEEEecCChh--cc
Confidence 5799999988999999999998874 34444433211 11 22467899999998763 34
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-+..++.|+.|||.|-.+-.+++-.-++-.++.+....
T Consensus 217 ~~~~ik~GaiVIDvgin~~~~~g~~kl~GDvdf~~~~~ 254 (301)
T PRK14194 217 DADWLKPGAVVIDVGINRIDDDGRSRLVGDVDFDSALP 254 (301)
T ss_pred cHhhccCCcEEEEecccccCCCCCcceecccchHHHHh
Confidence 44557899999999866521112113556677665553
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0075 Score=57.47 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=54.1
Q ss_pred CCEEEEE----CcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-----------eCCceeEEeecC-cc-CC--
Q 023678 39 APSVAVV----GVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-----------FQDKAYTVEELT-ED-SF-- 99 (279)
Q Consensus 39 ~~kVaIi----GATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-----------~~~~~~~v~~~d-~~-~~-- 99 (279)
++||.|+ ||||++|+.|++.|.+.+| ++..+.........+. ..+......|++ .. .+
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~---~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~ 128 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH---EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAG 128 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCC---EEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhcc
Confidence 4789999 9999999999999998765 5555543222111110 011111122322 11 12
Q ss_pred CCCcEEEecCCCch--hhhhHHHHHhCCC-EEEEcCC
Q 023678 100 DGVDIALFSAGGSI--SKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 100 ~~~DvVf~a~g~~~--s~~~~~~~~~aG~-~VIDlS~ 133 (279)
.++|+||.+.+... .+.+++.+.+.|+ ++|=.|+
T Consensus 129 ~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS 165 (378)
T PLN00016 129 AGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS 165 (378)
T ss_pred CCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 47899999876543 3455666667888 4664554
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0028 Score=58.78 Aligned_cols=91 Identities=11% Similarity=0.186 Sum_probs=55.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeCC--------c----eeEEeecCc-cCCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQD--------K----AYTVEELTE-DSFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~~--------~----~~~v~~~d~-~~~~~~Dv 104 (279)
||||+|+| .|.+|..+...|.+.+| ++..+ .+.. .-..+...+ . ..... .+. +...++|+
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~~g~---~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~ 74 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLARNGH---DVTLW-ARDPEQAAEINADRENPRYLPGIKLPDNLRAT-TDLAEALADADL 74 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC---EEEEE-ECCHHHHHHHHHcCcccccCCCCcCCCCeEEe-CCHHHHHhCCCE
Confidence 36899999 69999999999988765 33334 3321 000011000 0 11111 122 23468999
Q ss_pred EEecCCCchhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 105 ALFSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 105 Vf~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
||+|++.....+.+..+. ..|..|||++..+
T Consensus 75 vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 75 ILVAVPSQALREVLKQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred EEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecc
Confidence 999999876666655544 4577899998544
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0034 Score=64.84 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=56.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccC-C-CCCcEEEecCCCchhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F-DGVDIALFSAGGSISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~-~-~~~DvVf~a~g~~~s~ 115 (279)
+++||+||| .|.+|+.+.+.|.+.++ ++..+ +++.........+ .... .+.++ . ..+|+||+|++.....
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G~---~V~~~-dr~~~~~~a~~~G--v~~~-~~~~el~~~~aDvVILavP~~~~~ 439 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQGH---TVLAY-SRSDYSDEAQKLG--VSYF-SDADDLCEEHPEVILLCTSILSTE 439 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCcC---EEEEE-ECChHHHHHHHcC--CeEe-CCHHHHHhcCCCEEEECCChHHHH
Confidence 458999999 79999999999987643 55544 3332111100011 1111 11122 2 2589999999988777
Q ss_pred hhHHHHH----hCCCEEEEcCCC
Q 023678 116 KFGPIAV----EKGSIVVDNSSA 134 (279)
Q Consensus 116 ~~~~~~~----~aG~~VIDlS~~ 134 (279)
+++..+. +.|+.|+|.++.
T Consensus 440 ~vi~~l~~~~lk~g~ivvDv~Sv 462 (667)
T PLN02712 440 KVLKSLPFQRLKRSTLFVDVLSV 462 (667)
T ss_pred HHHHHHHHhcCCCCcEEEECCCc
Confidence 7666543 358999999876
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0023 Score=59.00 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=53.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~~ 116 (279)
++||+||| .|.+|+.+.+.|.+.+| ++... +++... ..+...+ ..+.+ +. +.+.++|+||+|++.....+
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~---~v~~~-d~~~~~~~~~~~~g--~~~~~-~~~e~~~~~d~vi~~vp~~~~~~ 73 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGY---SLVVY-DRNPEAVAEVIAAG--AETAS-TAKAVAEQCDVIITMLPNSPHVK 73 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCC---eEEEE-cCCHHHHHHHHHCC--CeecC-CHHHHHhcCCEEEEeCCCHHHHH
Confidence 36899999 79999999999988754 44433 332110 1111111 11211 11 23467999999999654433
Q ss_pred hH-------HHHHhCCCEEEEcCCCC
Q 023678 117 FG-------PIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 117 ~~-------~~~~~aG~~VIDlS~~~ 135 (279)
.+ ......|..|||.|+..
T Consensus 74 ~v~~~~~~~~~~~~~g~iiid~st~~ 99 (296)
T PRK11559 74 EVALGENGIIEGAKPGTVVIDMSSIA 99 (296)
T ss_pred HHHcCcchHhhcCCCCcEEEECCCCC
Confidence 22 12235788999988754
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0067 Score=57.44 Aligned_cols=68 Identities=22% Similarity=0.430 Sum_probs=42.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--e---ee-eC--CceeEEe--ecC-cc----CCCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--Q---LS-FQ--DKAYTVE--ELT-ED----SFDGV 102 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~---~~-~~--~~~~~v~--~~d-~~----~~~~~ 102 (279)
.+++|.|-|||||+|+.+++.|+++|| +++... |+.+. . +. +. ...+.+. |+. .. .+.+|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY---~V~gtV--R~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY---TVRGTV--RDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC---EEEEEE--cCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCC
Confidence 357999999999999999999999965 344443 22222 1 11 11 1123333 322 22 35799
Q ss_pred cEEEecCC
Q 023678 103 DIALFSAG 110 (279)
Q Consensus 103 DvVf~a~g 110 (279)
|.||.++.
T Consensus 80 dgVfH~As 87 (327)
T KOG1502|consen 80 DGVFHTAS 87 (327)
T ss_pred CEEEEeCc
Confidence 99999864
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0033 Score=55.91 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=43.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-cc----CCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-ED----SFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~----~~~~~DvVf~a~g~ 111 (279)
++|.|.||||++|+.+++.|.++++ ++++++.+...-.... .+.+....++. .. .+.++|.++++.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~---~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~ 73 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH---EVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL 73 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC---EEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence 5799999999999999999998843 4555543322222222 33344444443 22 24689999888873
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0067 Score=56.52 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=53.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.|||+|+| +|..|+.+.+.|.+.+| ++... +|+... ++ .+...++|+||+|++....+..+
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~~~G~---~V~~~-~r~~~~-------------~~-~~~~~~advvi~~vp~~~~~~v~ 64 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLASANGH---RVRVW-SRRSGL-------------SL-AAVLADADVIVSAVSMKGVRPVA 64 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCC---EEEEE-eCCCCC-------------CH-HHHHhcCCEEEEECChHHHHHHH
Confidence 47899999 79999999999988765 34333 333210 11 12245789999999998777766
Q ss_pred HHHH----hCCCEEEEcCCC
Q 023678 119 PIAV----EKGSIVVDNSSA 134 (279)
Q Consensus 119 ~~~~----~aG~~VIDlS~~ 134 (279)
+.+. ..|..|||.+..
T Consensus 65 ~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 65 EQVQALNLPPETIIVTATKG 84 (308)
T ss_pred HHHHHhcCCCCcEEEEeCCc
Confidence 6553 347889998753
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0096 Score=53.54 Aligned_cols=63 Identities=16% Similarity=0.299 Sum_probs=38.2
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeec----CccCCCCCcEEEecCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL----TEDSFDGVDIALFSAGG 111 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~----d~~~~~~~DvVf~a~g~ 111 (279)
|.|.||||++|+.+++.|.+.+ .+++.+. |+........ ...+.+. ....+.++|+||.|++.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~-r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILT-RSPPAGANTK---WEGYKPWAPLAESEALEGADAVINLAGE 67 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEe-CCCCCCCccc---ceeeecccccchhhhcCCCCEEEECCCC
Confidence 5799999999999999998874 3566664 3222111100 0011111 12345689999998864
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0042 Score=59.29 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=54.8
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEee--cC-ccCCCCCcEEEecCCCchhhhh
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE--LT-EDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~--~d-~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+|+||| +|.+|+.+.+.|.+++++ +. .+...+.........+... +.+ .+ .+...++|+||+|+|.....++
T Consensus 2 ~I~iIG-~GliG~siA~~L~~~G~~-v~--i~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~aDlVilavP~~~~~~v 76 (359)
T PRK06545 2 TVLIVG-LGLIGGSLALAIKAAGPD-VF--IIGYDPSAAQLARALGFGV-IDELAADLQRAAAEADLIVLAVPVDATAAL 76 (359)
T ss_pred eEEEEE-eCHHHHHHHHHHHhcCCC-eE--EEEeCCCHHHHHHHhcCCC-CcccccCHHHHhcCCCEEEEeCCHHHHHHH
Confidence 699999 799999999999887652 33 2322111111000000000 001 01 1234689999999999887777
Q ss_pred HHHHHh----CCCEEEEcCCC
Q 023678 118 GPIAVE----KGSIVVDNSSA 134 (279)
Q Consensus 118 ~~~~~~----aG~~VIDlS~~ 134 (279)
..++.. .|+.|.|.++-
T Consensus 77 l~~l~~~~l~~~~ivtDv~Sv 97 (359)
T PRK06545 77 LAELADLELKPGVIVTDVGSV 97 (359)
T ss_pred HHHHhhcCCCCCcEEEeCccc
Confidence 776653 57889998875
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0022 Score=61.14 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=56.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecCCC-CceeeeC-CceeEEeecCccCCCCCcEEEecC----C
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSA-GKQLSFQ-DKAYTVEELTEDSFDGVDIALFSA----G 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~s~-G~~~~~~-~~~~~v~~~d~~~~~~~DvVf~a~----g 110 (279)
+.+||+|+|+ |+ |+..++.+.+. | .++++.+.++... .+..... +.. .+.+++ +.+.+.|+++.++ +
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~--~~~~eLvaV~d~~~erA~~~A~~~gi~-~y~~~e-ell~d~Di~~V~ipt~~P 75 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAA--PERFELAGILAQGSERSRALAHRLGVP-LYCEVE-ELPDDIDIACVVVRSAIV 75 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhC--CCCcEEEEEEcCCHHHHHHHHHHhCCC-ccCCHH-HHhcCCCEEEEEeCCCCC
Confidence 3589999997 76 88899988876 6 7999999876432 1111110 111 122222 2234556665554 4
Q ss_pred CchhhhhHHHHHhCCCEEE
Q 023678 111 GSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VI 129 (279)
+....+++.+++++|+.|+
T Consensus 76 ~~~H~e~a~~aL~aGkHVL 94 (343)
T TIGR01761 76 GGQGSALARALLARGIHVL 94 (343)
T ss_pred CccHHHHHHHHHhCCCeEE
Confidence 5678899999999999887
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0045 Score=58.03 Aligned_cols=97 Identities=18% Similarity=0.264 Sum_probs=56.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC-CceeEEeecC--ccCCCCCcEEEecCCCch
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-DKAYTVEELT--EDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~-~~~~~v~~~d--~~~~~~~DvVf~a~g~~~ 113 (279)
...+|+|+|+ |.+|+.+++.|..++ ..++. +.+++.. ...+... +. .+.+.+ .+.+.++|+||.|++...
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g--~~~V~-v~~r~~~ra~~la~~~g~--~~~~~~~~~~~l~~aDvVi~at~~~~ 250 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKG--VAEIT-IANRTYERAEELAKELGG--NAVPLDELLELLNEADVVISATGAPH 250 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcC--CCEEE-EEeCCHHHHHHHHHHcCC--eEEeHHHHHHHHhcCCEEEECCCCCc
Confidence 3579999995 999999999998753 23333 3343221 1111110 11 122221 123467899999999876
Q ss_pred hhhhHHHHHh----CCCEEEEcCCCCCCCCC
Q 023678 114 SKKFGPIAVE----KGSIVVDNSSAFRMVEN 140 (279)
Q Consensus 114 s~~~~~~~~~----aG~~VIDlS~~~R~~~~ 140 (279)
..+....+.+ .+..+||++-+--.+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~viDlavPrdi~~~ 281 (311)
T cd05213 251 YAKIVERAMKKRSGKPRLIVDLAVPRDIEPE 281 (311)
T ss_pred hHHHHHHHHhhCCCCCeEEEEeCCCCCCchh
Confidence 6444444432 46789999965434444
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0037 Score=59.34 Aligned_cols=88 Identities=13% Similarity=0.162 Sum_probs=56.4
Q ss_pred CCEEEEECcCcHHHH-HHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCC--CCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSF--DGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~-eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~--~~~DvVf~a~g~~~s 114 (279)
++|||||| .|.+++ ..+..+... .+.++++++.++...-...........+ .+++ +.+ .++|+|+.|+|+...
T Consensus 1 ~irvgiiG-~G~~~~~~h~~~~~~~-~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~-ell~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 1 VINCAFIG-FGKSTTRYHLPYVLNR-KDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLD-EVLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred CeEEEEEC-CCHHHhheehhhHhcC-CCCEEEEEEEcCChhHHHHHHhcCCCcccCCHH-HHhcCCCCCEEEEeCCchHH
Confidence 47999999 688765 345655332 2679999988764311111100001112 2222 112 368999999999999
Q ss_pred hhhHHHHHhCCCEEE
Q 023678 115 KKFGPIAVEKGSIVV 129 (279)
Q Consensus 115 ~~~~~~~~~aG~~VI 129 (279)
.+++.+++++|..|+
T Consensus 78 ~~~~~~al~aGkhVl 92 (344)
T PRK10206 78 FEYAKRALEAGKNVL 92 (344)
T ss_pred HHHHHHHHHcCCcEE
Confidence 999999999999766
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0036 Score=51.52 Aligned_cols=89 Identities=16% Similarity=0.319 Sum_probs=54.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eee--eCCceeEEeecCc--cCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLS--FQDKAYTVEELTE--DSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~--~~~~~~~v~~~d~--~~~~~~DvVf~a~g~~ 112 (279)
..+|.|+|| |-+|+.++..|..++. -++..+ .| +..+ .+. +.+..+.+..++. ..+.++|+||.|++.+
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~g~--~~i~i~-nR-t~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAALGA--KEITIV-NR-TPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG 86 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHTTS--SEEEEE-ES-SHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT
T ss_pred CCEEEEECC-HHHHHHHHHHHHHcCC--CEEEEE-EC-CHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC
Confidence 579999996 8899999999988743 344444 33 2222 111 1223344555442 2246899999999987
Q ss_pred hhhhhHHHHHhCC----CEEEEcCC
Q 023678 113 ISKKFGPIAVEKG----SIVVDNSS 133 (279)
Q Consensus 113 ~s~~~~~~~~~aG----~~VIDlS~ 133 (279)
.. .+-+...+.+ ..|+|++-
T Consensus 87 ~~-~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 87 MP-IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp ST-SSTHHHHTTTCHHCSEEEES-S
T ss_pred Cc-ccCHHHHHHHHhhhhceecccc
Confidence 55 3344445555 38999974
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.005 Score=53.31 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=54.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--ee--e---CCceeEEeec-Cc----cCCCCCcEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LS--F---QDKAYTVEEL-TE----DSFDGVDIAL 106 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~--~---~~~~~~v~~~-d~----~~~~~~DvVf 106 (279)
..++.|+||||.+|+.+.+.|.+++ .++..+ +|+. .+. +. . .+..+...+. +. +.+.++|+||
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~-~R~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREG---ARVVLV-GRDL-ERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEE-cCCH-HHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 4689999999999999999998763 355544 4432 110 00 0 0111222222 11 2356899999
Q ss_pred ecCCCchhhhh-HHHHHhCCCEEEEcCCCC
Q 023678 107 FSAGGSISKKF-GPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 107 ~a~g~~~s~~~-~~~~~~aG~~VIDlS~~~ 135 (279)
.|++.+..... .+.+.+.+..|+|+...-
T Consensus 103 ~at~~g~~~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 103 AAGAAGVELLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred ECCCCCceechhhhcccCceeEEEEccCCC
Confidence 99998763111 222333477899986553
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0033 Score=61.30 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=52.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEee---------------cC-ccCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEE---------------LT-EDSF 99 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~---------------~d-~~~~ 99 (279)
|+++||+||| .||+|..+...|.+++| ++..+. ++.. -..+..+. +.+.+ +. ..+.
T Consensus 1 m~~~kI~VIG-lG~~G~~~A~~La~~G~---~V~~~D-~~~~~v~~l~~g~--~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 1 MSFETISVIG-LGYIGLPTAAAFASRQK---QVIGVD-INQHAVDTINRGE--IHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred CCccEEEEEC-cchhhHHHHHHHHhCCC---EEEEEe-CCHHHHHHHHCCC--CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 4467999999 79999999999998865 344442 2110 00010000 00000 00 0123
Q ss_pred CCCcEEEecCCCc----------hhhhhHH---HHHhCCCEEEEcCCC
Q 023678 100 DGVDIALFSAGGS----------ISKKFGP---IAVEKGSIVVDNSSA 134 (279)
Q Consensus 100 ~~~DvVf~a~g~~----------~s~~~~~---~~~~aG~~VIDlS~~ 134 (279)
.++|++|.|+|+. ...+.+. ..+..|..||+.|.-
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv 121 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS 121 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 4799999999984 2222222 234678999998774
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0049 Score=62.47 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=26.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
...|.|.||+|++|+.+++.|.++|+ +++++.
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~---~Vval~ 111 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGF---RVRAGV 111 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC---eEEEEe
Confidence 46799999999999999999998764 455553
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0095 Score=55.84 Aligned_cols=93 Identities=14% Similarity=0.272 Sum_probs=56.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC------CCceeee-CCcee-----EEe-ecCccCCCCCcEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQLSF-QDKAY-----TVE-ELTEDSFDGVDIA 105 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s------~G~~~~~-~~~~~-----~v~-~~d~~~~~~~DvV 105 (279)
+|||+|+| .|.+|..+...|.+++|. +..+...+. .|..+.. .+... .+. ..+.+...++|+|
T Consensus 2 ~mkI~IiG-~G~mG~~~A~~L~~~G~~---V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 77 (341)
T PRK08229 2 MARICVLG-AGSIGCYLGGRLAAAGAD---VTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLV 77 (341)
T ss_pred CceEEEEC-CCHHHHHHHHHHHhcCCc---EEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEE
Confidence 47899999 799999999999988753 444432111 1111110 00000 011 1122345689999
Q ss_pred EecCCCchhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 106 LFSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
|.|++.....+..+.+. ..+..||++...+
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~ 110 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGV 110 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCC
Confidence 99999887766666553 4567888886554
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0099 Score=55.10 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=76.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE-eecCCCCceee-eCCceeEEeec-----Ccc-CCCC-Cc-EEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLS-FQDKAYTVEEL-----TED-SFDG-VD-IALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l-~s~~s~G~~~~-~~~~~~~v~~~-----d~~-~~~~-~D-vVf~a~ 109 (279)
+||.|.||+|..|+++++.+.+ +.++|+.. .+.+..+.... ..+.++.+... +.+ .+.. .| +++.-+
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~---~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT 77 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA---AGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT 77 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc---CCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC
Confidence 4899999999999999999875 67888875 44444443221 12224444211 111 1233 78 999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHH
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIIC 176 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l 176 (279)
-+....+++..+.+.|+.+|-.+.-|- .++++.+... .+..++-.||-+--..
T Consensus 78 ~P~~~~~n~~~~~~~gv~~ViGTTG~~-------------~~~~~~l~~~-~~i~~l~apNfSiGv~ 130 (275)
T TIGR02130 78 HPSAVNDNAAFYGKHGIPFVMGTTGGD-------------REALAKLVAD-AKHPAVIAPNMAKQIV 130 (275)
T ss_pred ChHHHHHHHHHHHHCCCCEEEcCCCCC-------------HHHHHHHHHh-cCCCEEEECcccHHHH
Confidence 999999999999999998776666552 2222221110 1467888898765443
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.005 Score=63.64 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=56.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccC-C-CCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDS-F-DGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~-~-~~~DvVf~a~g~~~s~ 115 (279)
+++|+||| .|.+|+.+.+.|.+.++ ++..+ +++.. .... ..+ +... .+.++ . .++|+||+|++.....
T Consensus 52 ~~kIgIIG-~G~mG~slA~~L~~~G~---~V~~~-dr~~~-~~~A~~~G--v~~~-~d~~e~~~~~aDvViLavP~~~~~ 122 (667)
T PLN02712 52 QLKIAIIG-FGNYGQFLAKTLISQGH---TVLAH-SRSDH-SLAARSLG--VSFF-LDPHDLCERHPDVILLCTSIISTE 122 (667)
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCC---EEEEE-eCCHH-HHHHHHcC--CEEe-CCHHHHhhcCCCEEEEcCCHHHHH
Confidence 57999999 79999999999988753 55444 33211 1111 011 1111 12222 2 4589999999988777
Q ss_pred hhHHHHH----hCCCEEEEcCCCC
Q 023678 116 KFGPIAV----EKGSIVVDNSSAF 135 (279)
Q Consensus 116 ~~~~~~~----~aG~~VIDlS~~~ 135 (279)
+.+..+. ..|+.|+|.++.-
T Consensus 123 ~vl~~l~~~~l~~g~iVvDv~SvK 146 (667)
T PLN02712 123 NVLKSLPLQRLKRNTLFVDVLSVK 146 (667)
T ss_pred HHHHhhhhhcCCCCeEEEECCCCc
Confidence 7666543 4688999998653
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0047 Score=57.41 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=55.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecC--ccCCCCCcEEEecCCCchhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~~s~~ 116 (279)
|||+||| .|..|..+.+.|.+++| ++... +++.. -..+...+. ....+++ .+.+..+|+||+|++.....+
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~g~---~V~~~-dr~~~~~~~l~~~g~-~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~ 74 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKRGH---DCVGY-DHDQDAVKAMKEDRT-TGVANLRELSQRLSAPRVVWVMVPHGIVDA 74 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHCCC---EEEEE-ECCHHHHHHHHHcCC-cccCCHHHHHhhcCCCCEEEEEcCchHHHH
Confidence 4899999 79999999999988764 44443 33221 011111110 0111111 112356899999999986666
Q ss_pred hHHHH---HhCCCEEEEcCCCC
Q 023678 117 FGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 117 ~~~~~---~~aG~~VIDlS~~~ 135 (279)
....+ +..|..|||.|...
T Consensus 75 v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 75 VLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred HHHHHHhhCCCCCEEEECCCCC
Confidence 66554 35788999998765
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0096 Score=56.09 Aligned_cols=71 Identities=20% Similarity=0.336 Sum_probs=46.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCC--ceeEEee--cC---ccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD--KAYTVEE--LT---EDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~--~~~~v~~--~d---~~~~~~~DvVf~a~g~ 111 (279)
|||+|+||+|.||..+.-.|..++. ..+++++.-....|..+...+ ....+.. -+ .+++.++|+|+.+.|.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~-~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 5899999999999999999987743 246666643333343322211 1123332 22 3568899999999875
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.01 Score=57.38 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=58.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecCCCCceee----eCCc--------------------eeEEe-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLS----FQDK--------------------AYTVE- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~s~G~~~~----~~~~--------------------~~~v~- 92 (279)
|+||+|+|+||-+|+.-++.+.++ | .+++++++..+...+... +.-+ ...+.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~--p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~ 78 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRN--PDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLA 78 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhC--ccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEE
Confidence 368999999999999999999766 5 689888864433221111 1000 01111
Q ss_pred ecC-c---cCCCCCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 93 ELT-E---DSFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 93 ~~d-~---~~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
..+ . ....++|+|+.|.+.....+..-.++++|..|.
T Consensus 79 G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~Va 119 (385)
T PRK05447 79 GEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIA 119 (385)
T ss_pred ChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEE
Confidence 111 1 112468999999988777777778899999876
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.01 Score=46.02 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=52.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee--cCCCCceeeeCCceeEEe-ecC--ccCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS--KRSAGKQLSFQDKAYTVE-ELT--EDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s--~~s~G~~~~~~~~~~~v~-~~d--~~~~~~~DvVf~a~g~~~ 113 (279)
..||+|+|+ |..|+.++..+.+. ..+++..+.. .+..|+.+. .+.+. .++ .+.. ++|+++.|.|...
T Consensus 3 ~~~v~ivGa-g~~G~a~~~~~~~~--~g~~i~~~~dv~~~~~G~~i~----gipV~~~~~~l~~~~-~i~iaii~VP~~~ 74 (96)
T PF02629_consen 3 KTNVIIVGA-GNLGRALLYNGFSM--RGFGIVAVFDVDPEKIGKEIG----GIPVYGSMDELEEFI-EIDIAIITVPAEA 74 (96)
T ss_dssp TEEEEEETT-TSHHHHHHHHHHHH--HCECEEEEEEECTTTTTSEET----TEEEESSHHHHHHHC-TTSEEEEES-HHH
T ss_pred CCeEEEECC-CCcHHHHHHhHHHH--cCCCCEEEEEcCCCccCcEEC----CEEeeccHHHhhhhh-CCCEEEEEcCHHH
Confidence 479999997 45556555444333 3455555543 344565442 35555 333 1123 4999999999999
Q ss_pred hhhhHHHHHhCCCEEE
Q 023678 114 SKKFGPIAVEKGSIVV 129 (279)
Q Consensus 114 s~~~~~~~~~aG~~VI 129 (279)
+.+.+.+++++|++-|
T Consensus 75 a~~~~~~~~~~gIk~i 90 (96)
T PF02629_consen 75 AQEVADELVEAGIKGI 90 (96)
T ss_dssp HHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHcCCCEE
Confidence 9999999999999755
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0094 Score=55.16 Aligned_cols=143 Identities=16% Similarity=0.164 Sum_probs=76.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee---cCCCCceeee-CCceeEEeecCccCCCCCcEEEecCCCchhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS---KRSAGKQLSF-QDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s---~~s~G~~~~~-~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
-.|||+||||-||..+.|.|..+. -..++..-.+ .|+.-..+.. .+. -.+.++|.+.... |++|.......--
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~-~~~~ll~r~aea~~rq~l~~l~e~~~~-~~i~s~d~~~~~e-~i~v~vAs~~~g~ 244 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKV-GVKELLLRDAEARNRQRLTLLQEELGR-GKIMSLDYALPQE-DILVWVASMPKGV 244 (351)
T ss_pred CeEEEecCCchHHHHHHHHhcccc-CEEEEecccHHhhhhhhhhhcccccCC-Ceeeecccccccc-ceEEEEeecCCCc
Confidence 579999999999999999998651 2223222111 1111111111 111 1233444333433 4444444445566
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCC-----ceeeccC-CHHhhhccccCCCC-CcEE-----ECCCChHHHHHHhhhch
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENV-----PLVIPEV-NPEAMSGIKVGMGK-GALI-----ANPNCSTIICLMAATPL 183 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~v-----plvvPev-N~~~i~~~~~~~~~-~~iV-----anPgC~tt~l~laL~PL 183 (279)
++.+..++.||.|||-.-+--++..+ .+++|+= -.+... ++ |+ ..++ -.++|.+-.+++.+--.
T Consensus 245 ~I~pq~lkpg~~ivD~g~P~dvd~~vk~~~~V~Ii~GGlV~~s~~-it---~gi~~~~~~p~~~l~aClAEtlil~~eg~ 320 (351)
T COG5322 245 EIFPQHLKPGCLIVDGGYPKDVDTSVKNVGGVRIIPGGLVEHSLD-IT---WGIMKIVGMPVRQLFACLAETLILEFEGE 320 (351)
T ss_pred eechhhccCCeEEEcCCcCcccccccccCCCeEEecCccccCccc-cc---hhHHHHcccchhhHHHHHHHHHHHHhcch
Confidence 88999999999999965443222211 2444320 000000 00 11 0111 24678888888888888
Q ss_pred hhhcCc
Q 023678 184 HRRAKV 189 (279)
Q Consensus 184 ~~~~~i 189 (279)
+.+|-+
T Consensus 321 ~~~fS~ 326 (351)
T COG5322 321 HTNFSW 326 (351)
T ss_pred hhhccc
Confidence 777755
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.011 Score=54.62 Aligned_cols=85 Identities=14% Similarity=0.242 Sum_probs=48.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-cc-CC--CCCcEEEecCCCc---
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-ED-SF--DGVDIALFSAGGS--- 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~-~~--~~~DvVf~a~g~~--- 112 (279)
|||.|+||+|++|+.|.+.|.+++ .++... ++. ++++.+.+ .. .+ ...|+||.|++-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~---~~v~~~-~r~-----------~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~ 65 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG---YEVIAT-SRS-----------DLDLTDPEAVAKLLEAFKPDVVINCAAYTNVD 65 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS---EEEEEE-STT-----------CS-TTSHHHHHHHHHHH--SEEEE------HH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC---CEEEEe-Cch-----------hcCCCCHHHHHHHHHHhCCCeEeccceeecHH
Confidence 699999999999999999998763 344444 332 11111111 00 11 1468999987531
Q ss_pred ---------------hhhhhHHHHHhCCCEEEEcCCCCCCCC
Q 023678 113 ---------------ISKKFGPIAVEKGSIVVDNSSAFRMVE 139 (279)
Q Consensus 113 ---------------~s~~~~~~~~~aG~~VIDlS~~~R~~~ 139 (279)
....++..+.+.|+++|=+|+++=++.
T Consensus 66 ~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG 107 (286)
T PF04321_consen 66 ACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDG 107 (286)
T ss_dssp HHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S
T ss_pred hhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcC
Confidence 123444555679999998898876653
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.026 Score=47.83 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=51.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..+|.|+| .|-+|...++.|.+.++ ++.++ +++- ...+. .......-..++..++.++|+||.|++.......
T Consensus 13 ~~~vlVvG-GG~va~rka~~Ll~~ga---~V~VI-sp~~-~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~ 86 (157)
T PRK06719 13 NKVVVIIG-GGKIAYRKASGLKDTGA---FVTVV-SPEI-CKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMM 86 (157)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC---EEEEE-cCcc-CHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHH
Confidence 57999999 59999999999987643 45555 3321 11111 1111122223445667889999999998766555
Q ss_pred HHHHHhCCC
Q 023678 118 GPIAVEKGS 126 (279)
Q Consensus 118 ~~~~~~aG~ 126 (279)
....++++.
T Consensus 87 i~~~a~~~~ 95 (157)
T PRK06719 87 VKQAAHDFQ 95 (157)
T ss_pred HHHHHHHCC
Confidence 555554444
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.034 Score=52.34 Aligned_cols=91 Identities=23% Similarity=0.298 Sum_probs=51.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-c--eee-e--CCceeEEe--ecC-cc----CCCCCcEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-K--QLS-F--QDKAYTVE--ELT-ED----SFDGVDIA 105 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~--~~~-~--~~~~~~v~--~~d-~~----~~~~~DvV 105 (279)
+++|.|.||||++|+.|++.|.++++ +++.+. |+... . .+. . ....+.+. |+. .. .+.++|+|
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 85 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY---TVKGTV-RNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV 85 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEe-CCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence 46899999999999999999998865 444443 32111 0 000 0 01122222 221 11 24679999
Q ss_pred EecCCCch-------------hhhhHHHHHhCCC-EEEEcCC
Q 023678 106 LFSAGGSI-------------SKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 106 f~a~g~~~-------------s~~~~~~~~~aG~-~VIDlS~ 133 (279)
|.+.+... +..+++.+.++|+ ++|=.|+
T Consensus 86 ih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 86 FHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 99986421 1233445556776 4665555
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.014 Score=54.98 Aligned_cols=70 Identities=24% Similarity=0.450 Sum_probs=41.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCCC--CceeeeCC-c-eeEEee--c-C-ccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSA--GKQLSFQD-K-AYTVEE--L-T-EDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s~--G~~~~~~~-~-~~~v~~--~-d-~~~~~~~DvVf~a~g 110 (279)
|||+|+||||.||+.++..|... .+. .+++++. +... |..+...+ . ...+.. . + .+++.++|+||+|+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~-~~~~~el~L~d-~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ-LPAGSELSLYD-IAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCCccEEEEEe-cCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 68999999999999999888542 133 3455553 3222 11122111 1 123332 1 2 245688999999998
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 79 ~ 79 (312)
T PRK05086 79 V 79 (312)
T ss_pred C
Confidence 5
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.031 Score=52.74 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=88.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCccCCCCCcEEEecCCCc-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS-ISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~-~s~~ 116 (279)
.++|+||| .|..|+.+.+.|.++++ +++....+++.. ......+ +.+.+ ..+...++|+||+|++.. ....
T Consensus 3 ~kkIgiIG-~G~mG~AiA~~L~~sG~---~Viv~~~~~~~~~~~a~~~G--v~~~s-~~ea~~~ADiVvLaVpp~~~~~~ 75 (314)
T TIGR00465 3 GKTVAIIG-YGSQGHAQALNLRDSGL---NVIVGLRKGGASWKKATEDG--FKVGT-VEEAIPQADLIMNLLPDEVQHEV 75 (314)
T ss_pred cCEEEEEe-EcHHHHHHHHHHHHCCC---eEEEEECcChhhHHHHHHCC--CEECC-HHHHHhcCCEEEEeCCcHhHHHH
Confidence 46899999 79999999999988754 333322221111 1111111 12222 123356799999999987 4444
Q ss_pred hHHHHH---hCCCEEEEcCCCCCCCC---------CCceeeccCCHHhhhc-cccCCCCCcEE-ECCCChHHHHHHhhhc
Q 023678 117 FGPIAV---EKGSIVVDNSSAFRMVE---------NVPLVIPEVNPEAMSG-IKVGMGKGALI-ANPNCSTIICLMAATP 182 (279)
Q Consensus 117 ~~~~~~---~aG~~VIDlS~~~R~~~---------~vplvvPevN~~~i~~-~~~~~~~~~iV-anPgC~tt~l~laL~P 182 (279)
+...+. +.|. +|..++-|.++. ++..+.|..+...++. +.++..-..++ .+++++..+.-+++.=
T Consensus 76 v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~ 154 (314)
T TIGR00465 76 YEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAY 154 (314)
T ss_pred HHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHH
Confidence 443332 3454 777777665431 2345678777664421 21121112444 6777777766665543
Q ss_pred hhhhcCccE-E------------EEEEeecccccChhhH
Q 023678 183 LHRRAKVTR-M------------VVSTYQAASGAGAAAM 208 (279)
Q Consensus 183 L~~~~~i~~-v------------~vtt~q~vSGaG~~~~ 208 (279)
+..-+..+. | .++...+.||.|-+-+
T Consensus 155 ~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v 193 (314)
T TIGR00465 155 AKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALI 193 (314)
T ss_pred HHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHH
Confidence 332222211 1 2345567888886654
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.014 Score=55.46 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=56.2
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCC-------CceEEEEEeecCCCCceeeeCCce-eEE-eec----Ccc--CCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDF-------PYRSIKMLASKRSAGKQLSFQDKA-YTV-EEL----TED--SFDG 101 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~-------p~~~l~~l~s~~s~G~~~~~~~~~-~~v-~~~----d~~--~~~~ 101 (279)
|+++||+|+| .|-||+.++++|.+++- -.++++.++.++..-.. ...... ... .+. +.+ .-.+
T Consensus 1 ~~~v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (333)
T COG0460 1 MKTVKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR-DLDLLNAEVWTTDGALSLGDEVLLDED 78 (333)
T ss_pred CceEEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc-cccccchhhheecccccccHhhhcccc
Confidence 5678999999 89999999999987521 24566666544211000 111111 011 111 011 1247
Q ss_pred CcEEEecCCC--chhh--hhHHHHHhCCCEEE
Q 023678 102 VDIALFSAGG--SISK--KFGPIAVEKGSIVV 129 (279)
Q Consensus 102 ~DvVf~a~g~--~~s~--~~~~~~~~aG~~VI 129 (279)
.|+|+.+++. +.++ ++..+++++|..||
T Consensus 79 ~dvvve~~~~d~~~~~~~~~~~~al~~GkhVV 110 (333)
T COG0460 79 IDVVVELVGGDVEPAEPADLYLKALENGKHVV 110 (333)
T ss_pred CCEEEecCcccCCchhhHHHHHHHHHcCCeEE
Confidence 8999999876 3445 78889999999999
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.018 Score=54.63 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=55.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCC-----CCceEEEEEeecCC-----CCceeee----CC-cee---EEeecCccCC--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRD-----FPYRSIKMLASKRS-----AGKQLSF----QD-KAY---TVEELTEDSF-- 99 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~-----~p~~~l~~l~s~~s-----~G~~~~~----~~-~~~---~v~~~d~~~~-- 99 (279)
|||+|+| .|.||+.++++|.++. -..++++.+..++. .|-.+.. .. ..+ .....+.+.+
T Consensus 1 mrVaIiG-fG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIG-LGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 4899999 8999999999997631 13567777765432 1111100 00 000 0011111111
Q ss_pred CCCcEEEecCCCch----hhhhHHHHHhCCCEEEEc
Q 023678 100 DGVDIALFSAGGSI----SKKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 100 ~~~DvVf~a~g~~~----s~~~~~~~~~aG~~VIDl 131 (279)
.++|+++.|++... ...+.++++++|+-||-.
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa 115 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA 115 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC
Confidence 36899999997432 456778999999999843
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0093 Score=57.86 Aligned_cols=89 Identities=19% Similarity=0.290 Sum_probs=51.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC------CCc-eeeeCC-----------ceeEEeecCc-cCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGK-QLSFQD-----------KAYTVEELTE-DSFD 100 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s------~G~-~~~~~~-----------~~~~v~~~d~-~~~~ 100 (279)
|||+||| .|++|..+...|.+++|. +..+..... .|. ++...+ ..+.+.. +. +.+.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~~---V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~-~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGHE---VTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATT-DYEDAIR 75 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCCe---EEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEEC-CHHHHHh
Confidence 4899999 799999999999988763 444422111 111 000000 0122211 22 2357
Q ss_pred CCcEEEecCCCchh----------hhhHHH---HHhCCCEEEEcCC
Q 023678 101 GVDIALFSAGGSIS----------KKFGPI---AVEKGSIVVDNSS 133 (279)
Q Consensus 101 ~~DvVf~a~g~~~s----------~~~~~~---~~~aG~~VIDlS~ 133 (279)
++|+||.|+++... ...... .+..|..|||.|.
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~ST 121 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST 121 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 89999999997632 222222 2357889998874
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0046 Score=57.40 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=53.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCch-hhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
.||+||| .|..|..+.+.|.+++| ++... +++. .+.-.+......... ++ +...++|+||.|++... .++.
T Consensus 2 ~~Ig~IG-lG~mG~~mA~~l~~~G~---~V~v~-d~~~-~~~~~~~~~g~~~~~-s~~~~~~~aDvVi~~vp~~~~~~~v 74 (296)
T PRK15461 2 AAIAFIG-LGQMGSPMASNLLKQGH---QLQVF-DVNP-QAVDALVDKGATPAA-SPAQAAAGAEFVITMLPNGDLVRSV 74 (296)
T ss_pred CeEEEEe-eCHHHHHHHHHHHHCCC---eEEEE-cCCH-HHHHHHHHcCCcccC-CHHHHHhcCCEEEEecCCHHHHHHH
Confidence 4899999 79999999999998865 34333 3321 111011000011111 11 23467899999999875 3333
Q ss_pred HH------HHHhCCCEEEEcCCCC
Q 023678 118 GP------IAVEKGSIVVDNSSAF 135 (279)
Q Consensus 118 ~~------~~~~aG~~VIDlS~~~ 135 (279)
.. ..+..|..|||.|...
T Consensus 75 l~~~~~i~~~l~~g~lvid~sT~~ 98 (296)
T PRK15461 75 LFGENGVCEGLSRDALVIDMSTIH 98 (296)
T ss_pred HcCcccHhhcCCCCCEEEECCCCC
Confidence 21 1235788899998764
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.018 Score=54.59 Aligned_cols=73 Identities=23% Similarity=0.377 Sum_probs=45.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC--CceeEEeec-C----ccCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ--DKAYTVEEL-T----EDSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~--~~~~~v~~~-d----~~~~~~~DvVf~a~g~ 111 (279)
|.||+|+||.|.||..+...|..++. ..+++++.-....|..+... .....+.+. + .+++.++|+|+.++|.
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~-~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPH-VSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 56999999999999999999886632 33566663222233222211 112334332 1 2467899999999886
Q ss_pred c
Q 023678 112 S 112 (279)
Q Consensus 112 ~ 112 (279)
.
T Consensus 87 ~ 87 (321)
T PTZ00325 87 P 87 (321)
T ss_pred C
Confidence 3
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0061 Score=57.15 Aligned_cols=91 Identities=16% Similarity=0.271 Sum_probs=56.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee--------CCcee--EEeec-Cc-cCCCCCcEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--------QDKAY--TVEEL-TE-DSFDGVDIA 105 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~--------~~~~~--~v~~~-d~-~~~~~~DvV 105 (279)
+|||+|+| .|..|..+...|.+.+|+ +.++ .|+.. -..+.. .+..+ .+... +. +...++|+|
T Consensus 4 ~m~I~iIG-~G~mG~~ia~~L~~~G~~---V~~~-~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~V 78 (328)
T PRK14618 4 GMRVAVLG-AGAWGTALAVLAASKGVP---VRLW-ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFA 78 (328)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCe---EEEE-eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEE
Confidence 47999999 699999999999987653 4444 33211 011110 01000 01111 22 234679999
Q ss_pred EecCCCchhhhhHHHHHhCCCEEEEcCCCC
Q 023678 106 LFSAGGSISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
|+|++....++..+. +..++.+||.+.-+
T Consensus 79 i~~v~~~~~~~v~~~-l~~~~~vi~~~~Gi 107 (328)
T PRK14618 79 VVAVPSKALRETLAG-LPRALGYVSCAKGL 107 (328)
T ss_pred EEECchHHHHHHHHh-cCcCCEEEEEeecc
Confidence 999999977666644 45678899887754
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.012 Score=53.76 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=39.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-c----cCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-E----DSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g 110 (279)
++|.|.||+|++|+.|++.|.++++ ++..+..+......+...+......|+. . +.+.++|+||.+.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE---EVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC---EEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4799999999999999999998754 5555543222111111111111122332 1 12457899998875
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.008 Score=54.27 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=24.1
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
||.|+||||++|+.+++.|.++++ ++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~---~v~~~ 29 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR---VVVAL 29 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC---EEEEe
Confidence 589999999999999999988754 44444
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.026 Score=52.84 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|+|||.+|.+|+-+.++|.++++ .+....++.. ++ .+....+|+||+|+|... .+
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~---tVtv~~~rT~---------------~l-~e~~~~ADIVIsavg~~~--~v 215 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANA---TVTIAHSRTR---------------DL-PAVCRRADILVAAVGRPE--MV 215 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCC---EEEEECCCCC---------------CH-HHHHhcCCEEEEecCChh--hc
Confidence 467999999999999999999997643 4444433221 01 123457899999999864 34
Q ss_pred HHHHHhCCCEEEEcCCCCCCC-C---CCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMV-E---NVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~-~---~vplvvPevN~~~i~~ 155 (279)
....++.|+.|||.+-.+-.+ + +..-++-.|+.+.+..
T Consensus 216 ~~~~lk~GavVIDvGin~~~~~~~~~g~~~l~GDvd~~~v~~ 257 (296)
T PRK14188 216 KGDWIKPGATVIDVGINRIPAPEKGEGKTRLVGDVAFAEAAE 257 (296)
T ss_pred chheecCCCEEEEcCCcccCCccccCCCceeeCCCCHHHHHh
Confidence 445578999999997655211 1 1113567777666653
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.012 Score=51.25 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=24.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
++++|.|+||||.+|++|++.|.++++
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~ 31 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA 31 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 456899999999999999999998865
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.03 Score=52.30 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=60.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC-CC--CcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DG--VDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~-~~--~DvVf~a~g~~~s~ 115 (279)
.-||.|.|.||-.|+.+++.|.+.+|+ .+..+. ++.-+..+. + +.... +..++ .. +|+++.++|.....
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~--~v~pVn-p~~~~~~v~--G--~~~y~-sv~dlp~~~~~DlAvi~vp~~~v~ 79 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN--IVGGVT-PGKGGTTVL--G--LPVFN-TVAEAVEATGANASVIYVPPPFAA 79 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC--EEEEEC-CCCCCCeEe--C--eeccC-CHHHHhhccCCCEEEEEcCHHHHH
Confidence 369999999999999999999887554 444553 221011111 1 11111 11122 22 89999999999999
Q ss_pred hhHHHHHhCCCE-EEEcCCCCCC
Q 023678 116 KFGPIAVEKGSI-VVDNSSAFRM 137 (279)
Q Consensus 116 ~~~~~~~~aG~~-VIDlS~~~R~ 137 (279)
+.+.++.++|++ +|=.|+-|.+
T Consensus 80 ~~l~e~~~~gvk~avI~s~Gf~~ 102 (291)
T PRK05678 80 DAILEAIDAGIDLIVCITEGIPV 102 (291)
T ss_pred HHHHHHHHCCCCEEEEECCCCCH
Confidence 999999999985 3447887753
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0062 Score=56.64 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=54.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eee-eCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
..+|+|+| .|.+|+.+.+.|...+. ++.+. +|+.... ... .........++ .+.+.++|+||.|+|...-.+
T Consensus 151 gk~v~IiG-~G~iG~avA~~L~~~G~---~V~v~-~R~~~~~~~~~~~g~~~~~~~~l-~~~l~~aDiVint~P~~ii~~ 224 (287)
T TIGR02853 151 GSNVMVLG-FGRTGMTIARTFSALGA---RVFVG-ARSSADLARITEMGLIPFPLNKL-EEKVAEIDIVINTIPALVLTA 224 (287)
T ss_pred CCEEEEEc-ChHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHHCCCeeecHHHH-HHHhccCCEEEECCChHHhCH
Confidence 36899999 59999999999988753 54444 3332100 000 01111111111 123568999999998764322
Q ss_pred hHHHHHhCCCEEEEcCCCC
Q 023678 117 FGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~~~ 135 (279)
-.-...+.|+.+||+++.-
T Consensus 225 ~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 225 DVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred HHHhcCCCCeEEEEeCcCC
Confidence 2223346789999999853
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.01 Score=56.17 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=46.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC----ceEEEEEeecC----CCCceeeeCC------ceeEEeecCccCCCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP----YRSIKMLASKR----SAGKQLSFQD------KAYTVEELTEDSFDGVD 103 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p----~~~l~~l~s~~----s~G~~~~~~~------~~~~v~~~d~~~~~~~D 103 (279)
+..||+|+||+|.||..+.-.|...+.- ..+++++.... ..|..+...+ ....+..-+.+++.++|
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 81 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVD 81 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCC
Confidence 4689999999999999999988776421 12677774322 1232221111 11233322245678999
Q ss_pred EEEecCCC
Q 023678 104 IALFSAGG 111 (279)
Q Consensus 104 vVf~a~g~ 111 (279)
+|+.+.|.
T Consensus 82 vVVitAG~ 89 (323)
T TIGR01759 82 AALLVGAF 89 (323)
T ss_pred EEEEeCCC
Confidence 99999876
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.013 Score=55.45 Aligned_cols=73 Identities=19% Similarity=0.348 Sum_probs=46.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC----CceEEEEEeecCC----CCceeeeCC------ceeEEeecCccCCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQLSFQD------KAYTVEELTEDSFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~----p~~~l~~l~s~~s----~G~~~~~~~------~~~~v~~~d~~~~~~~Dv 104 (279)
..||+|+||+|.||..++-.|..++. ...+++++...+. .|..+...+ ....+..-+.+++.++|+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 46999999999999999998886632 1236777744222 233222111 123333223456889999
Q ss_pred EEecCCC
Q 023678 105 ALFSAGG 111 (279)
Q Consensus 105 Vf~a~g~ 111 (279)
|+.+.|.
T Consensus 82 vvitaG~ 88 (322)
T cd01338 82 ALLVGAK 88 (322)
T ss_pred EEEeCCC
Confidence 9999876
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.033 Score=44.85 Aligned_cols=83 Identities=22% Similarity=0.246 Sum_probs=49.8
Q ss_pred EEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 41 SVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 41 kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+|||+||+ +..|..+++.|.++++ +++.+.-+ +..+ .+. -.+..++. .-..+|+++++++.....++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~---~v~~Vnp~---~~~i--~G~-~~y~sl~e-~p~~iDlavv~~~~~~~~~~ 71 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGY---EVYPVNPK---GGEI--LGI-KCYPSLAE-IPEPIDLAVVCVPPDKVPEI 71 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT----EEEEESTT---CSEE--TTE-E-BSSGGG-CSST-SEEEE-S-HHHHHHH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCC---EEEEECCC---ceEE--CcE-EeeccccC-CCCCCCEEEEEcCHHHHHHH
Confidence 79999998 7789999999998643 56666322 1211 111 11222221 23578999999999999999
Q ss_pred HHHHHhCCCE-EEEcCC
Q 023678 118 GPIAVEKGSI-VVDNSS 133 (279)
Q Consensus 118 ~~~~~~aG~~-VIDlS~ 133 (279)
++++.+.|++ |+=.++
T Consensus 72 v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 72 VDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHT-SEEEE-TT
T ss_pred HHHHHHcCCCEEEEEcc
Confidence 9999999885 333444
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.027 Score=52.30 Aligned_cols=70 Identities=17% Similarity=0.383 Sum_probs=42.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeee------CCceeEEee-cCccCCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF------QDKAYTVEE-LTEDSFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~------~~~~~~v~~-~d~~~~~~~DvVf~a~ 109 (279)
|+||+|+|| |.+|..+...+..+++. +++++..... .|..... ......+.. .+.+++.++|+||++.
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~--ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~ 78 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG--DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITA 78 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe--EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECC
Confidence 479999997 99999999999887432 6666632221 1211110 111223332 2234578999999997
Q ss_pred CC
Q 023678 110 GG 111 (279)
Q Consensus 110 g~ 111 (279)
+.
T Consensus 79 ~~ 80 (307)
T PRK06223 79 GV 80 (307)
T ss_pred CC
Confidence 53
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.041 Score=51.39 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=55.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eee--eCCceeEEe--ecC-cc----CCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLS--FQDKAYTVE--ELT-ED----SFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~--~~~~~~~v~--~~d-~~----~~~~~DvVf~a 108 (279)
.++|.|.||||++|+.|++.|.+++ +..++..+ +++.... .+. .....+.+. |+. .+ .+.++|+||.+
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g-~~~~V~~~-~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENY-NPKKIIIY-SRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhC-CCcEEEEE-cCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 4689999999999999999998763 22355544 3332211 000 011122222 322 11 24578999998
Q ss_pred CCCch------------------hhhhHHHHHhCCC-EEEEcCCCCCCCCCCce
Q 023678 109 AGGSI------------------SKKFGPIAVEKGS-IVVDNSSAFRMVENVPL 143 (279)
Q Consensus 109 ~g~~~------------------s~~~~~~~~~aG~-~VIDlS~~~R~~~~vpl 143 (279)
.+... ...+...+.+.|+ ++|=.|+.....+..+|
T Consensus 82 Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~~~p~~~Y 135 (324)
T TIGR03589 82 AALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKAANPINLY 135 (324)
T ss_pred cccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCHH
Confidence 76421 1223344455665 56667765433333333
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.006 Score=51.39 Aligned_cols=116 Identities=16% Similarity=0.343 Sum_probs=68.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--------Cceee-eCC----ceeEEeecCc-cCCCCCcEEE
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------GKQLS-FQD----KAYTVEELTE-DSFDGVDIAL 106 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--------G~~~~-~~~----~~~~v~~~d~-~~~~~~DvVf 106 (279)
||+|+| .|..|..+...|.+++ .++.+. +++.. +.... +.+ ..+.+.. |. +.++++|+++
T Consensus 1 KI~ViG-aG~~G~AlA~~la~~g---~~V~l~-~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~-dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIG-AGNWGTALAALLADNG---HEVTLW-GRDEEQIEEINETRQNPKYLPGIKLPENIKATT-DLEEALEDADIII 74 (157)
T ss_dssp EEEEES-SSHHHHHHHHHHHHCT---EEEEEE-TSCHHHHHHHHHHTSETTTSTTSBEETTEEEES-SHHHHHTT-SEEE
T ss_pred CEEEEC-cCHHHHHHHHHHHHcC---CEEEEE-eccHHHHHHHHHhCCCCCCCCCcccCccccccc-CHHHHhCcccEEE
Confidence 799999 5999999999999875 344444 44320 00000 011 1233322 32 3457899999
Q ss_pred ecCCCchhhhhHHHHH---hCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC
Q 023678 107 FSAGGSISKKFGPIAV---EKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 107 ~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
.|+|+...+++++++. +.|..+|-++.-| +.+--+.+.|+-.+.+..- .-..++.|
T Consensus 75 iavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~--~~~~~~~~~~~i~~~~~~~-----~~~~lsGP 133 (157)
T PF01210_consen 75 IAVPSQAHREVLEQLAPYLKKGQIIISATKGF--EPGTLLLLSEVIEEILPIP-----RIAVLSGP 133 (157)
T ss_dssp E-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE--ETTEEEEHHHHHHHHHSSC-----GEEEEESS
T ss_pred ecccHHHHHHHHHHHhhccCCCCEEEEecCCc--ccCCCccHHHHHHHHhhhc-----ceEEeeCc
Confidence 9999999888888775 4788898888777 3333445566665555420 23455666
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.009 Score=55.73 Aligned_cols=90 Identities=16% Similarity=0.184 Sum_probs=54.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce-eeeCCceeEEeecC--ccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEELT--EDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~-~~~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~~s~ 115 (279)
..||.|+| .|.+|+.+++.|...+ .++.++ +++..... ....+ .....++ .+.+.++|+||.|+|.....
T Consensus 152 g~kvlViG-~G~iG~~~a~~L~~~G---a~V~v~-~r~~~~~~~~~~~G--~~~~~~~~l~~~l~~aDiVI~t~p~~~i~ 224 (296)
T PRK08306 152 GSNVLVLG-FGRTGMTLARTLKALG---ANVTVG-ARKSAHLARITEMG--LSPFHLSELAEEVGKIDIIFNTIPALVLT 224 (296)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHCC---CEEEEE-ECCHHHHHHHHHcC--CeeecHHHHHHHhCCCCEEEECCChhhhh
Confidence 47999999 5999999999998764 355444 34321110 00011 1111111 23356899999999876332
Q ss_pred hhHHHHHhCCCEEEEcCCCC
Q 023678 116 KFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~ 135 (279)
+-.-.....|..|||+++.-
T Consensus 225 ~~~l~~~~~g~vIIDla~~p 244 (296)
T PRK08306 225 KEVLSKMPPEALIIDLASKP 244 (296)
T ss_pred HHHHHcCCCCcEEEEEccCC
Confidence 22223356799999998763
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.02 Score=52.43 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=50.3
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeec-Cc----------cCCCCCcEEEecCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-TE----------DSFDGVDIALFSAG 110 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~-d~----------~~~~~~DvVf~a~g 110 (279)
|.|.||||++|+.|++.|.++++ +++.+..+...+.... ......+.+. +. ..+.++|+||.|++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~---~~v~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~ 77 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI---TDILVVDNLKDGTKFV-NLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGA 77 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC---ceEEEecCCCcchHHH-hhhhhhhhhhhhHHHHHHHHhcccccCCccEEEECce
Confidence 78999999999999999998753 3344433333222110 0011112111 00 11236899999864
Q ss_pred Cch----------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 111 GSI----------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 111 ~~~----------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
... +..++..+.+.|+++|=.|+..
T Consensus 78 ~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~ 118 (308)
T PRK11150 78 CSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAA 118 (308)
T ss_pred ecCCcCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchH
Confidence 210 1234455566788887777753
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.032 Score=50.54 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=24.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+|.|.||||++|+.|++.|.+++| +++.+.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~---~V~~~~ 31 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH---DVRGLD 31 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC---eEEEEe
Confidence 499999999999999999998644 445553
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.019 Score=60.84 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=52.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-c----cCCCCCcEEEecCCCc--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-E----DSFDGVDIALFSAGGS-- 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g~~-- 112 (279)
|||.|.||||++|+++++.|.++++ +++.+ +++.... .. ........|+. . ..+.++|+||.+.+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~---~Vv~l-~R~~~~~-~~-~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~ 74 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH---EVVGI-ARHRPDS-WP-SSADFIAADIRDATAVESAMTGADVVAHCAWVRGR 74 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC---EEEEE-ECCchhh-cc-cCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccc
Confidence 4899999999999999999998764 45445 3322111 11 01111112322 1 1246799999997642
Q ss_pred -------hhhhhHHHHHhCCC-EEEEcCCC
Q 023678 113 -------ISKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 113 -------~s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
-+..+++.+.+.|+ ++|-.|+.
T Consensus 75 ~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~ 104 (854)
T PRK05865 75 NDHINIDGTANVLKAMAETGTGRIVFTSSG 104 (854)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEEECCc
Confidence 12344555566776 56656664
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.014 Score=53.79 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=22.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRD 63 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~ 63 (279)
|||.|.||+|++|+.|++.|.+++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g 24 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG 24 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC
Confidence 489999999999999999998874
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.029 Score=46.92 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=55.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|.+..+|+.|..+|.++ ...+....++ . + ++ .+....+|+|++|+|.. ..+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~---gatV~~~~~~-t--~------------~l-~~~v~~ADIVvsAtg~~--~~i 85 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRD---GATVYSCDWK-T--I------------QL-QSKVHDADVVVVGSPKP--EKV 85 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC---CCEEEEeCCC-C--c------------CH-HHHHhhCCEEEEecCCC--Ccc
Confidence 3579999999999999999999875 3344344221 1 0 11 12346899999999977 345
Q ss_pred HHHHHhCCCEEEEcCCCC
Q 023678 118 GPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~ 135 (279)
-...++.|+.|||.+...
T Consensus 86 ~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEWIKPGATVINCSPTK 103 (140)
T ss_pred CHHHcCCCCEEEEcCCCc
Confidence 567789999999987654
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.033 Score=52.75 Aligned_cols=74 Identities=19% Similarity=0.369 Sum_probs=46.2
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC--CceeEEeec--C---ccCCCCCcEEEecC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ--DKAYTVEEL--T---EDSFDGVDIALFSA 109 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~--~~~~~v~~~--d---~~~~~~~DvVf~a~ 109 (279)
....||+|+||+|.||..+...|..+++ ..+++++.-....|..+... .....+.++ + .+++.++|+|+.+.
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~-~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitA 94 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPL-VSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPA 94 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCC-CCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeC
Confidence 3357999999999999999999986632 23566663323333322211 112234331 1 24578999999998
Q ss_pred CC
Q 023678 110 GG 111 (279)
Q Consensus 110 g~ 111 (279)
|.
T Consensus 95 G~ 96 (323)
T PLN00106 95 GV 96 (323)
T ss_pred CC
Confidence 75
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.018 Score=53.09 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=55.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cc---ee----ee---CC------------ceeEEee
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK---QL----SF---QD------------KAYTVEE 93 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~---~~----~~---~~------------~~~~v~~ 93 (279)
+..||+|+| .|+.|..+...|.+++|+ +.++ .++.. .+ .+ .. .+ ..+.+.
T Consensus 2 ~~~kIaViG-aG~mG~~iA~~la~~G~~---V~l~-d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~- 75 (287)
T PRK08293 2 DIKNVTVAG-AGVLGSQIAFQTAFHGFD---VTIY-DISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT- 75 (287)
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhcCCe---EEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-
Confidence 346899999 599999999999987653 4344 22210 00 00 00 00 011222
Q ss_pred cCc-cCCCCCcEEEecCCCch--hhhhHHHH---HhCCCEEEEcCCCCCC
Q 023678 94 LTE-DSFDGVDIALFSAGGSI--SKKFGPIA---VEKGSIVVDNSSAFRM 137 (279)
Q Consensus 94 ~d~-~~~~~~DvVf~a~g~~~--s~~~~~~~---~~aG~~VIDlS~~~R~ 137 (279)
.+. +.+.++|+||.|++... -+++..++ ...++.+.+++|.++.
T Consensus 76 ~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~ 125 (287)
T PRK08293 76 TDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP 125 (287)
T ss_pred CCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH
Confidence 122 23578999999999763 33433333 3566777789988755
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.016 Score=55.04 Aligned_cols=91 Identities=16% Similarity=0.260 Sum_probs=58.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC------C-CceEEEEEeecCC-----CCceeee-------CC--cee----EEee
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD------F-PYRSIKMLASKRS-----AGKQLSF-------QD--KAY----TVEE 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~------~-p~~~l~~l~s~~s-----~G~~~~~-------~~--~~~----~v~~ 93 (279)
+++|+|+| .|.||+.++++|.++. + -.++++.++.++. .|-.+.. .+ ..+ ...+
T Consensus 2 ~i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 47999999 8999999999987631 0 1367777754321 1211110 00 000 0011
Q ss_pred cCccC-C--CCCcEEEecCCCchhhhhHHHHHhCCCEEEE
Q 023678 94 LTEDS-F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 94 ~d~~~-~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VID 130 (279)
.+.++ + .++|+++.+++.+.+.++..+++++|+.||-
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVt 120 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVT 120 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEE
Confidence 12111 2 3689999999999999999999999999884
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.013 Score=54.39 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=52.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCccC----CCCCcEEEecCCCc-h
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS----FDGVDIALFSAGGS-I 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~~~----~~~~DvVf~a~g~~-~ 113 (279)
|||+||| .|..|+.+.+.|.+.+| ++... +++.. -+.+...+ ..+.+ ++++ ..+.|+||.|++.. .
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~---~v~v~-dr~~~~~~~~~~~g--~~~~~-~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGH---EVVGY-DRNPEAVEALAEEG--ATGAD-SLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCC---eEEEE-ECCHHHHHHHHHCC--CeecC-CHHHHHhhcCCCCEEEEEecCCcH
Confidence 4899999 79999999999998755 44443 33211 11111111 11111 1111 12469999999987 4
Q ss_pred hhhhHHHH---HhCCCEEEEcCCCC
Q 023678 114 SKKFGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 114 s~~~~~~~---~~aG~~VIDlS~~~ 135 (279)
..+....+ +..|..|||.|...
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 45554443 34688899987643
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.029 Score=48.41 Aligned_cols=31 Identities=13% Similarity=0.330 Sum_probs=25.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
++++.|.||+|++|+.+++.|.++ + +++.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~---~V~~~~ 33 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H---TLLLGG 33 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C---CEEEEe
Confidence 468999999999999999999875 3 455553
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.048 Score=44.80 Aligned_cols=91 Identities=23% Similarity=0.323 Sum_probs=55.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee---------------cCCCCceeee--------CCceeEEe--e--
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS---------------KRSAGKQLSF--------QDKAYTVE--E-- 93 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s---------------~~s~G~~~~~--------~~~~~~v~--~-- 93 (279)
||.|+|+ |-+|.++++.|...++. ++..+-. .+..|++-.. ....+.+. +
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~--~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVG--KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCC--EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeee
Confidence 5899995 99999999999987543 3433421 1222321110 01122222 2
Q ss_pred cCc----cCCCCCcEEEecCCCchhhhhHH-HHHhCCCEEEEcCCC
Q 023678 94 LTE----DSFDGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNSSA 134 (279)
Q Consensus 94 ~d~----~~~~~~DvVf~a~g~~~s~~~~~-~~~~aG~~VIDlS~~ 134 (279)
++. +.+.+.|+||.|.+...++.... .+.+.|+++||....
T Consensus 78 ~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 23578999999999877665554 446789999986654
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0055 Score=56.44 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=50.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-ccCCCCCcEEEecCCCchhh-hhH
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISK-KFG 118 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~-~~~ 118 (279)
||+||| .|.+|+.+.+.|.+++| ++... +++. .+.-.+......... + .+.+.++|+||+|++..... ..+
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~---~V~~~-dr~~-~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~vp~~~~~~~v~ 73 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGY---QLHVT-TIGP-EVADELLAAGAVTAE-TARQVTEQADVIFTMVPDSPQVEEVA 73 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCC---eEEEE-cCCH-HHHHHHHHCCCcccC-CHHHHHhcCCEEEEecCCHHHHHHHH
Confidence 589999 79999999999998765 34433 3321 110000000011111 1 13356899999999976332 221
Q ss_pred ------HHHHhCCCEEEEcCCC
Q 023678 119 ------PIAVEKGSIVVDNSSA 134 (279)
Q Consensus 119 ------~~~~~aG~~VIDlS~~ 134 (279)
......|..|||.|..
T Consensus 74 ~~~~~~~~~~~~g~iivd~st~ 95 (291)
T TIGR01505 74 FGENGIIEGAKPGKTLVDMSSI 95 (291)
T ss_pred cCcchHhhcCCCCCEEEECCCC
Confidence 1223568889998764
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.024 Score=54.28 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=54.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC-------CCceEEEEEeecCCC-----Cceeee----CCceeEEe---ecCccC-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSA-----GKQLSF----QDKAYTVE---ELTEDS- 98 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~-------~p~~~l~~l~s~~s~-----G~~~~~----~~~~~~v~---~~d~~~- 98 (279)
+++|+|+| .|.||+.++++|.++. --.++++.++.++.. |-.+.. ......+. ..+.++
T Consensus 2 ~i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 2 KIKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eeEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 47999999 8999999999986541 024566666543211 111100 00000000 101111
Q ss_pred C---CCCcEEEecCCC-----chhhhhHHHHHhCCCEEE
Q 023678 99 F---DGVDIALFSAGG-----SISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 99 ~---~~~DvVf~a~g~-----~~s~~~~~~~~~aG~~VI 129 (279)
+ .+.|||+.|+++ +.+..+..+++++|+.||
T Consensus 81 ~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVV 119 (346)
T PRK06813 81 ATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIV 119 (346)
T ss_pred hcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEE
Confidence 1 157999999765 567889899999999999
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.027 Score=53.42 Aligned_cols=74 Identities=20% Similarity=0.362 Sum_probs=45.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC----CceEEEEEeecCC----CCceeeeCC------ceeEEeecCccCCCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQLSFQD------KAYTVEELTEDSFDGVD 103 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~----p~~~l~~l~s~~s----~G~~~~~~~------~~~~v~~~d~~~~~~~D 103 (279)
++.||+|+||+|.||..++-.|..++. ...+++++..... .|..+...+ ....+..-+.+++.++|
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daD 82 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDAD 82 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCC
Confidence 357999999999999999988776532 1126777743222 233222111 12233322346688999
Q ss_pred EEEecCCC
Q 023678 104 IALFSAGG 111 (279)
Q Consensus 104 vVf~a~g~ 111 (279)
+|+.+.|.
T Consensus 83 iVVitaG~ 90 (326)
T PRK05442 83 VALLVGAR 90 (326)
T ss_pred EEEEeCCC
Confidence 99998874
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.044 Score=49.61 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=24.7
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+|.|.||||++|+.|++.|.+++ +..++..+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~ 31 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVL 31 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEe
Confidence 58999999999999999998763 23566555
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.027 Score=51.65 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=56.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--C--Cc--------eeeeCC-----------ceeEEeec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--A--GK--------QLSFQD-----------KAYTVEEL 94 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~--G~--------~~~~~~-----------~~~~v~~~ 94 (279)
++.||+||| .|++|..+...|..+++ ++..+. ++. . ++ .+...+ ..+.+. .
T Consensus 2 ~~~kI~VIG-~G~mG~~ia~~la~~g~---~V~~~d-~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~ 75 (282)
T PRK05808 2 GIQKIGVIG-AGTMGNGIAQVCAVAGY---DVVMVD-ISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-T 75 (282)
T ss_pred CccEEEEEc-cCHHHHHHHHHHHHCCC---ceEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-C
Confidence 345899999 59999999999998865 344442 211 0 00 000011 012222 1
Q ss_pred CccCCCCCcEEEecCCCchh--hhhHHHH---HhCCCEEEEcCCCCCCC
Q 023678 95 TEDSFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 95 d~~~~~~~DvVf~a~g~~~s--~~~~~~~---~~aG~~VIDlS~~~R~~ 138 (279)
+.+.+.++|+||.|++.... .+...++ +..++.++.+++.....
T Consensus 76 ~~~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~ 124 (282)
T PRK05808 76 DLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT 124 (282)
T ss_pred CHHHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 22346789999999986544 4455444 34577777777776543
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.015 Score=53.96 Aligned_cols=88 Identities=11% Similarity=0.145 Sum_probs=53.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCccC-C---CCCcEEEecCCCc-h
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-F---DGVDIALFSAGGS-I 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~~~-~---~~~DvVf~a~g~~-~ 113 (279)
|||+||| .|.+|..+.+.|.+++| ++... .++.. -..+...+ ....+ +.++ . +.+|+||.|++.. .
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g~---~v~v~-dr~~~~~~~~~~~g--~~~~~-s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDGH---EVVGY-DVNQEAVDVAGKLG--ITARH-SLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCCC---EEEEE-ECCHHHHHHHHHCC--CeecC-CHHHHHHhCCCCCEEEEEecCchH
Confidence 4799999 79999999999988754 44433 33211 01111111 11111 1112 2 2369999999987 5
Q ss_pred hhhhHHHH---HhCCCEEEEcCCCC
Q 023678 114 SKKFGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 114 s~~~~~~~---~~aG~~VIDlS~~~ 135 (279)
.++....+ +..|..|||.|...
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCC
Confidence 56655544 34688999997653
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.035 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.6
Q ss_pred EEEECcCcHHHHHHHHHHHcCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~ 64 (279)
|.|.||||++|+.|++.|.++++
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~ 23 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI 23 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC
Confidence 57999999999999999998853
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.031 Score=52.09 Aligned_cols=94 Identities=18% Similarity=0.290 Sum_probs=61.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|+++.+|+-+..+|.++ ...+..+.++. + ++ .+....+|+||.|+|... -+
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~---gatVtv~~s~t---~------------~l-~~~~~~ADIVIsAvg~p~--~i 215 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQK---NASVTILHSRS---K------------DM-ASYLKDADVIVSAVGKPG--LV 215 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHC---CCeEEEEeCCc---h------------hH-HHHHhhCCEEEECCCCCc--cc
Confidence 3579999999999999999999876 34555554321 0 11 123468999999998752 13
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-+...+.|+.|||.+... ..++ -.+-.++.+.++.
T Consensus 216 ~~~~vk~gavVIDvGi~~-~~~g--kl~GDvd~~~~~~ 250 (286)
T PRK14175 216 TKDVVKEGAVIIDVGNTP-DENG--KLKGDVDYDAVKE 250 (286)
T ss_pred CHHHcCCCcEEEEcCCCc-CCCC--CeecCccHHHHHh
Confidence 334567899999998753 1122 1445566565553
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.014 Score=54.34 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=51.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchh-hhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSIS-KKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s-~~~ 117 (279)
|||++|| .|..|..+.+.|.+.+| ++... .++.....+...+ ....+ ++ +...++|+||.|++.... ++.
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G~---~v~v~-~~~~~~~~~~~~g--~~~~~-s~~~~~~~advVi~~v~~~~~v~~v 72 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAGH---QLHVT-TIGPVADELLSLG--AVSVE-TARQVTEASDIIFIMVPDTPQVEEV 72 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCC---eEEEE-eCCHhHHHHHHcC--CeecC-CHHHHHhcCCEEEEeCCChHHHHHH
Confidence 4799999 89999999999998865 33333 2221111111111 11111 12 224678999999998733 332
Q ss_pred H------HHHHhCCCEEEEcCCCC
Q 023678 118 G------PIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 118 ~------~~~~~aG~~VIDlS~~~ 135 (279)
. ......|..|||.|..-
T Consensus 73 ~~~~~g~~~~~~~g~ivvd~sT~~ 96 (292)
T PRK15059 73 LFGENGCTKASLKGKTIVDMSSIS 96 (292)
T ss_pred HcCCcchhccCCCCCEEEECCCCC
Confidence 2 11234688899998653
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.026 Score=53.43 Aligned_cols=72 Identities=21% Similarity=0.372 Sum_probs=42.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCC----ceEEEEEeecC--C--CCceeeeCC------ceeEEeecCccCCCCCcEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFP----YRSIKMLASKR--S--AGKQLSFQD------KAYTVEELTEDSFDGVDIA 105 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p----~~~l~~l~s~~--s--~G~~~~~~~------~~~~v~~~d~~~~~~~DvV 105 (279)
.||+|+||+|.||..+...|..++.- ..+++++.... . .|......+ ....+..-+.+++.++|+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 38999999999999999999876321 12466664322 1 122111111 1122222223567899999
Q ss_pred EecCCC
Q 023678 106 LFSAGG 111 (279)
Q Consensus 106 f~a~g~ 111 (279)
+.+.|.
T Consensus 81 VitAG~ 86 (323)
T cd00704 81 ILVGAF 86 (323)
T ss_pred EEeCCC
Confidence 998775
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.03 Score=53.67 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=50.3
Q ss_pred CCcceeeee-cccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeeeCC-----ceeEEee-c
Q 023678 24 TKPMFTRVR-MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSFQD-----KAYTVEE-L 94 (279)
Q Consensus 24 ~~~~~~~~~-~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~~~-----~~~~v~~-~ 94 (279)
++||--... |.+. +..||+|||| |.||..+.-.|...+. ..+++++..... .|......+ ....+.. .
T Consensus 22 ~~~~~~~~~~m~~~-~~~KI~IIGa-G~VG~~~a~~l~~~~l-~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~ 98 (350)
T PLN02602 22 FKPIHNSSPPSPTR-RHTKVSVVGV-GNVGMAIAQTILTQDL-ADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAST 98 (350)
T ss_pred hhcccccccccccC-CCCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCC
Confidence 455554444 5221 1269999996 9999999998887732 236666643222 232221111 0134433 2
Q ss_pred CccCCCCCcEEEecCCC
Q 023678 95 TEDSFDGVDIALFSAGG 111 (279)
Q Consensus 95 d~~~~~~~DvVf~a~g~ 111 (279)
+.+++.++|+|+.+.|.
T Consensus 99 dy~~~~daDiVVitAG~ 115 (350)
T PLN02602 99 DYAVTAGSDLCIVTAGA 115 (350)
T ss_pred CHHHhCCCCEEEECCCC
Confidence 34567899999999875
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.045 Score=51.02 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=62.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..+|+|||.+|.+|+-|..+|.+++ ..+....++. + +. +....+|+|+.|+|.... +
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~g---atVtv~~s~t---~--------------~l~~~~~~ADIVI~avg~~~~--v 215 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKN---ATVTLTHSRT---R--------------NLAEVARKADILVVAIGRGHF--V 215 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCC---CEEEEECCCC---C--------------CHHHHHhhCCEEEEecCcccc--C
Confidence 5799999999999999999998764 3333332211 0 11 224679999999987643 3
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-+...+.|+.|||.+-.+- .++ -++-.|+.+.++.
T Consensus 216 ~~~~ik~GavVIDvgin~~-~~g--kl~GDVdf~~v~~ 250 (284)
T PRK14179 216 TKEFVKEGAVVIDVGMNRD-ENG--KLIGDVDFDEVAE 250 (284)
T ss_pred CHHHccCCcEEEEecceec-CCC--CeecCccHHHHHh
Confidence 3456889999999976642 222 2556677666553
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.022 Score=52.23 Aligned_cols=26 Identities=23% Similarity=0.472 Sum_probs=23.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.++|.|.||||++|+.|++.|.++++
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~ 29 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY 29 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC
Confidence 46899999999999999999998865
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.043 Score=50.24 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=53.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCc-----eeEE--eec-CccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK-----AYTV--EEL-TEDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~-----~~~v--~~~-d~~~~~~~DvVf~a~g~ 111 (279)
|||+|+| .|.+|..+...|.+.+| ++.++..+...-..+...+. +... ... +.....++|+||.|+++
T Consensus 1 m~I~IiG-~G~~G~~~a~~L~~~g~---~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILG-AGAIGGLFGAALAQAGH---DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKA 76 (304)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC---eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEeccc
Confidence 5899999 59999999999988764 44444321111001110111 1111 111 12223678999999998
Q ss_pred chhhhhHHHHHh---CCCEEEEcCCCC
Q 023678 112 SISKKFGPIAVE---KGSIVVDNSSAF 135 (279)
Q Consensus 112 ~~s~~~~~~~~~---aG~~VIDlS~~~ 135 (279)
....+..+.+.. .+..||.+...+
T Consensus 77 ~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 77 YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 877666665543 456777665544
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.031 Score=49.47 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=55.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEe--ecCccCCCCCcEEEecCCCc-h
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVE--ELTEDSFDGVDIALFSAGGS-I 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~--~~d~~~~~~~DvVf~a~g~~-~ 113 (279)
..+|.|+| .|.+|..-++.|.+.+ .++.++ +.+.... .+...+ .+.+. +.+..++.++|+||.|++.. .
T Consensus 9 gk~vlVvG-gG~va~rk~~~Ll~~g---a~VtVv-sp~~~~~l~~l~~~~-~i~~~~~~~~~~dl~~~~lVi~at~d~~l 82 (205)
T TIGR01470 9 GRAVLVVG-GGDVALRKARLLLKAG---AQLRVI-AEELESELTLLAEQG-GITWLARCFDADILEGAFLVIAATDDEEL 82 (205)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCC---CEEEEE-cCCCCHHHHHHHHcC-CEEEEeCCCCHHHhCCcEEEEECCCCHHH
Confidence 46999999 5999999999998864 344445 3322111 111111 23332 33445678899999999986 6
Q ss_pred hhhhHHHHHhCCCEE
Q 023678 114 SKKFGPIAVEKGSIV 128 (279)
Q Consensus 114 s~~~~~~~~~aG~~V 128 (279)
..++...+.+.|+.|
T Consensus 83 n~~i~~~a~~~~ilv 97 (205)
T TIGR01470 83 NRRVAHAARARGVPV 97 (205)
T ss_pred HHHHHHHHHHcCCEE
Confidence 677788888899887
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.12 Score=48.08 Aligned_cols=91 Identities=16% Similarity=0.345 Sum_probs=52.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC------CCceeeeCCceeEEe---ec-CccCCCCCcEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQLSFQDKAYTVE---EL-TEDSFDGVDIAL 106 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s------~G~~~~~~~~~~~v~---~~-d~~~~~~~DvVf 106 (279)
|..|||+|+| .|.+|..+...|.+.+| ++.++. |+. .|..+.....+..+. .. +.++...+|+||
T Consensus 3 ~~~m~I~IiG-~GaiG~~lA~~L~~~g~---~V~~~~-r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 3 SETPRIGIIG-TGAIGGFYGAMLARAGF---DVHFLL-RSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred CcCcEEEEEC-CCHHHHHHHHHHHHCCC---eEEEEE-eCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEE
Confidence 3457999999 69999999999988754 344443 322 121111101111111 11 122345789999
Q ss_pred ecCCCchhhhhHHHH---HhCCCEEEEcC
Q 023678 107 FSAGGSISKKFGPIA---VEKGSIVVDNS 132 (279)
Q Consensus 107 ~a~g~~~s~~~~~~~---~~aG~~VIDlS 132 (279)
.|+......+..+.+ +..+..||.+-
T Consensus 78 lavK~~~~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 78 VGLKTTANALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred EEecCCChHhHHHHHhhhcCCCCEEEEec
Confidence 999987666555444 33455666553
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.048 Score=55.40 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=25.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
|||.|.||||++|+.|++.|.++. ...++..+.
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~-~g~~V~~l~ 33 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRR-REATVHVLV 33 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 489999999999999999998421 234555554
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.062 Score=47.40 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=52.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-e-CCceeEEe--ecCccCCCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-F-QDKAYTVE--ELTEDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~-~~~~~~v~--~~d~~~~~~~DvVf~a~g~~~s 114 (279)
..+|.|+| .|-+|...++.|.+.+ .++.++ ++.. ...+. . ....+... .+...++.++|+||.|++....
T Consensus 10 ~k~vLVIG-gG~va~~ka~~Ll~~g---a~V~VI-s~~~-~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~el 83 (202)
T PRK06718 10 NKRVVIVG-GGKVAGRRAITLLKYG---AHIVVI-SPEL-TENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRV 83 (202)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCC---CeEEEE-cCCC-CHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHH
Confidence 46999999 5999999999998874 355555 3322 11111 0 01112222 2334567889999999998766
Q ss_pred hhhHHHHHhCCCEE
Q 023678 115 KKFGPIAVEKGSIV 128 (279)
Q Consensus 115 ~~~~~~~~~aG~~V 128 (279)
.+.+...+++|..|
T Consensus 84 N~~i~~~a~~~~lv 97 (202)
T PRK06718 84 NEQVKEDLPENALF 97 (202)
T ss_pred HHHHHHHHHhCCcE
Confidence 55555555667644
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.054 Score=49.67 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=52.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeC-CceeEEeecCccC----C--CCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQ-DKAYTVEELTEDS----F--DGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~-~~~~~v~~~d~~~----~--~~~DvVf~a~g~ 111 (279)
|+|.|+|+||+ |+.|.+.|.+.+|+ +.+.. +...|. .+... ...+....++.+. + .+.|+|+.|+-.
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~---v~~s~-~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHP 75 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIE---ILVTV-TTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHP 75 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCe---EEEEE-ccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCH
Confidence 58999999999 99999999877543 32222 222232 22211 2233333344221 2 368999999875
Q ss_pred c---hhhhhHHHHHhCCCEEEEc
Q 023678 112 S---ISKKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 112 ~---~s~~~~~~~~~aG~~VIDl 131 (279)
. +|+.....+.+.|...|.+
T Consensus 76 fA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 76 FAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEE
Confidence 4 3444455556788877755
|
This enzyme was found to be a monomer by gel filtration. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.045 Score=51.70 Aligned_cols=68 Identities=22% Similarity=0.390 Sum_probs=43.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCce-EEEEEeec--CCCCceeeeC------CceeEEee-cCccCCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASK--RSAGKQLSFQ------DKAYTVEE-LTEDSFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~-~l~~l~s~--~s~G~~~~~~------~~~~~v~~-~d~~~~~~~DvVf~a~ 109 (279)
+||+|+|| |.||+.++-.|... ... +++++.-. ...|..+... .....+.. -+-+++.++|+|+.+.
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~--~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQ--GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcc--cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 58999998 99999999999776 444 77666432 2223322211 12233333 2245678999999998
Q ss_pred C
Q 023678 110 G 110 (279)
Q Consensus 110 g 110 (279)
|
T Consensus 78 G 78 (313)
T COG0039 78 G 78 (313)
T ss_pred C
Confidence 5
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.067 Score=49.48 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||||.+|+++.+.|.++++ +++++
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~---~Vv~~ 56 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA---HVIVP 56 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45444
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.041 Score=51.86 Aligned_cols=70 Identities=24% Similarity=0.429 Sum_probs=45.1
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCC--ceeEEee---cC--ccCCCCCcEEEecCCC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD--KAYTVEE---LT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~--~~~~v~~---~d--~~~~~~~DvVf~a~g~ 111 (279)
||+|+||+|.||..+.-.|..+++ ..+++++.-.+..|..+...+ ....+.. -+ .+++.++|+|+.+.|.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~-~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~ 77 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPY-VSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGV 77 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC-CcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCC
Confidence 699999999999999998877632 246777743333343332211 1123332 11 3568899999999875
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.028 Score=53.29 Aligned_cols=93 Identities=16% Similarity=0.282 Sum_probs=58.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeee--------CCcee--EEe-ecCc-cCCCCCcEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF--------QDKAY--TVE-ELTE-DSFDGVDIA 105 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~--------~~~~~--~v~-~~d~-~~~~~~DvV 105 (279)
++||+|+| .|..|..|...|.+.+|+ +. +.+++. .-..+.. ++..+ .+. ..|. +..+++|++
T Consensus 1 ~~kI~ViG-aGswGTALA~~la~ng~~---V~-lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i 75 (329)
T COG0240 1 MMKIAVIG-AGSWGTALAKVLARNGHE---VR-LWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADII 75 (329)
T ss_pred CceEEEEc-CChHHHHHHHHHHhcCCe---eE-EEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence 37899999 599999999999988643 22 333331 0001111 11100 011 1121 234679999
Q ss_pred EecCCCchhhhhHHHH---HhCCCEEEEcCCCCC
Q 023678 106 LFSAGGSISKKFGPIA---VEKGSIVVDNSSAFR 136 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~---~~aG~~VIDlS~~~R 136 (279)
++++|+..-++++.++ +..+.++|-++--+-
T Consensus 76 v~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie 109 (329)
T COG0240 76 VIAVPSQALREVLRQLKPLLLKDAIIVSATKGLE 109 (329)
T ss_pred EEECChHHHHHHHHHHhhhccCCCeEEEEecccc
Confidence 9999999888888875 367888887776663
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.08 Score=47.58 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=26.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+..+|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~---~V~~~ 33 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY---TVYGA 33 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 356899999999999999999988754 45444
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.035 Score=51.19 Aligned_cols=66 Identities=23% Similarity=0.445 Sum_probs=38.9
Q ss_pred EECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eee-eCCceeEEeecC-c----cCCCCCcEEEecCC
Q 023678 44 VVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLS-FQDKAYTVEELT-E----DSFDGVDIALFSAG 110 (279)
Q Consensus 44 IiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~-~~~~~~~v~~~d-~----~~~~~~DvVf~a~g 110 (279)
|.||+|++|+.|++.|.+++. ..+++.+........ ... .....+...|+. . +.+.++|+||-+..
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa 75 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGY-IYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAA 75 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCC-ceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCc
Confidence 799999999999999998852 466665532221111 011 111112223432 2 24679999999853
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.074 Score=49.61 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=58.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC-C--CCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-D--GVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~-~--~~DvVf~a~g~~~s~ 115 (279)
.-||.|.|.||..|+.+++.|..-+++ ++.-.+.+.-+..+ + + +.... +..++ . +.|+++.++|.....
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~---~v~~V~p~~~~~~v-~-G--~~~y~-sv~dlp~~~~~Dlavi~vpa~~v~ 77 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN---IVGGVTPGKGGTTV-L-G--LPVFD-SVKEAVEETGANASVIFVPAPFAA 77 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC---EEEEECCCCCccee-c-C--eeccC-CHHHHhhccCCCEEEEecCHHHHH
Confidence 368999999999999999999877555 33332322111111 0 1 11111 11122 2 379999999999999
Q ss_pred hhHHHHHhCCCE-EEEcCCCCC
Q 023678 116 KFGPIAVEKGSI-VVDNSSAFR 136 (279)
Q Consensus 116 ~~~~~~~~aG~~-VIDlS~~~R 136 (279)
+.+.++.++|++ +|=+|+-|.
T Consensus 78 ~~l~e~~~~Gvk~avIis~Gf~ 99 (286)
T TIGR01019 78 DAIFEAIDAGIELIVCITEGIP 99 (286)
T ss_pred HHHHHHHHCCCCEEEEECCCCC
Confidence 999999999984 334777774
|
ATP citrate lyases appear to form an outgroup. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.09 Score=50.66 Aligned_cols=99 Identities=13% Similarity=0.213 Sum_probs=59.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC----ceEEEEEeecCCC--Ccee----e--------eCCc----eeEEeecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP----YRSIKMLASKRSA--GKQL----S--------FQDK----AYTVEELT 95 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p----~~~l~~l~s~~s~--G~~~----~--------~~~~----~~~v~~~d 95 (279)
+++||+|+| +|..|..|...|.+.+.. ..++.. ..++.. ++.+ . .++. ++.... |
T Consensus 10 ~~~ki~ViG-aG~wGtAlA~~l~~n~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~ts-d 86 (365)
T PTZ00345 10 GPLKVSVIG-SGNWGSAISKVVGENTQRNYIFHNEVRM-WVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVS-D 86 (365)
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEE-EEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEec-C
Confidence 357999999 699999999999876410 013322 333331 1111 0 0111 122221 2
Q ss_pred -ccCCCCCcEEEecCCCchhhhhHHHHHh-----CCCEEEEcCCCCCCCC
Q 023678 96 -EDSFDGVDIALFSAGGSISKKFGPIAVE-----KGSIVVDNSSAFRMVE 139 (279)
Q Consensus 96 -~~~~~~~DvVf~a~g~~~s~~~~~~~~~-----aG~~VIDlS~~~R~~~ 139 (279)
.+..+++|++++|+|+...++.+.++.. .+..||..+.-+..+.
T Consensus 87 l~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 87 LKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred HHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCC
Confidence 1345789999999999988888877653 3557887777765443
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.023 Score=52.84 Aligned_cols=83 Identities=14% Similarity=0.219 Sum_probs=48.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC--ccCCC--CCcEEEecCC-----
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT--EDSFD--GVDIALFSAG----- 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d--~~~~~--~~DvVf~a~g----- 110 (279)
|||.|+|++|.+|.+|.+.|. +..++..+.. .+ +++.+.+ .+.+. .-|+|+-|..
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~----~~~~v~a~~~-~~-----------~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD 64 (281)
T COG1091 1 MKILITGANGQLGTELRRALP----GEFEVIATDR-AE-----------LDITDPDAVLEVIRETRPDVVINAAAYTAVD 64 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC----CCceEEeccC-cc-----------ccccChHHHHHHHHhhCCCEEEECccccccc
Confidence 459999999999999999986 3456655532 22 1121111 00111 2355554432
Q ss_pred -------------CchhhhhHHHHHhCCCEEEEcCCCCCCC
Q 023678 111 -------------GSISKKFGPIAVEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 111 -------------~~~s~~~~~~~~~aG~~VIDlS~~~R~~ 138 (279)
..-+..++..+.+.|+++|=.|.||=||
T Consensus 65 ~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFD 105 (281)
T COG1091 65 KAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFD 105 (281)
T ss_pred cccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEec
Confidence 2223445556677899888788777665
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.09 Score=44.98 Aligned_cols=119 Identities=20% Similarity=0.292 Sum_probs=66.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+.++|.|+|.++.||+-|..+|.++ ...+...-+.. +.+ .+....+|+|+.|.|...- +
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~---~atVt~~h~~T---~~l-------------~~~~~~ADIVVsa~G~~~~--i 93 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNK---GATVTICHSKT---KNL-------------QEITRRADIVVSAVGKPNL--I 93 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHT---T-EEEEE-TTS---SSH-------------HHHHTTSSEEEE-SSSTT---B
T ss_pred CCCEEEEECCcCCCChHHHHHHHhC---CCeEEeccCCC---Ccc-------------cceeeeccEEeeeeccccc--c
Confidence 3579999999999999999999886 33333332211 000 1123678999999886422 2
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEE-ECC-CChHHHHHHhhhchhh
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALI-ANP-NCSTIICLMAATPLHR 185 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iV-anP-gC~tt~l~laL~PL~~ 185 (279)
-....+.|+.|||.+-.+- ....-++-.++.+.++. ....+ ..| |.-+...++.++-+.+
T Consensus 94 ~~~~ik~gavVIDvG~~~~--~~~~~~~GDv~~~~~~~------~a~~itPvPgGVGplT~a~L~~N~v~ 155 (160)
T PF02882_consen 94 KADWIKPGAVVIDVGINYV--PGDGKLVGDVDFESVKE------KASAITPVPGGVGPLTVAMLMKNLVK 155 (160)
T ss_dssp -GGGS-TTEEEEE--CEEE--TTTTEEEESB-HHHHHT------TCSEEE-SSSSCHHHHHHHHHHHHHH
T ss_pred ccccccCCcEEEecCCccc--cccceeeecccHHHhhc------cceEEeeCCCCccHHHHHHHHHHHHH
Confidence 2334578999999987652 12234566777666664 33333 333 5666666666655544
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.046 Score=51.50 Aligned_cols=70 Identities=17% Similarity=0.341 Sum_probs=44.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCce-EEEEEeecCC--CCceeeeCC-----ceeEEeecCccCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRS--AGKQLSFQD-----KAYTVEELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~-~l~~l~s~~s--~G~~~~~~~-----~~~~v~~~d~~~~~~~DvVf~a~g 110 (279)
.+||+|+|| |.||..+.-.|... +.. +++++..... .|......+ ....+..-+.+++.++|+|+++.|
T Consensus 6 ~~ki~iiGa-G~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 6 HNKVVLVGD-GAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 479999998 99999999998877 454 5666643222 122211110 123333323456889999999987
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 83 ~ 83 (315)
T PRK00066 83 A 83 (315)
T ss_pred C
Confidence 5
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.094 Score=53.89 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=27.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.+||.|.||||++|+.|++.|.+++ +..+++.+.
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d 39 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNY-PDYKIVVLD 39 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEe
Confidence 4799999999999999999998764 245665553
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.066 Score=47.85 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=56.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe----ec-----------CCCCceeee--------CCceeEEee--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SK-----------RSAGKQLSF--------QDKAYTVEE-- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~----s~-----------~s~G~~~~~--------~~~~~~v~~-- 93 (279)
..||.|+| .|-+|.++++.|...|...+ .++. +. +..|+.-.. ....+.+..
T Consensus 21 ~~~VlivG-~GglGs~va~~La~~Gvg~i--~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 21 NARVLVVG-AGGLGSPAAEYLAAAGVGKL--GLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEE--EEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 46899999 59999999999998855433 3331 11 123321110 011122221
Q ss_pred --cCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 94 --LTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 94 --~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
++. +.+.++|+||.|++...++.+..++ .+.|+++|+.+
T Consensus 98 ~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 98 ERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred ceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 211 2246899999999988777766554 67889998864
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.044 Score=55.13 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=57.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eee--eCCceeEEeecC--ccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLS--FQDKAYTVEELT--EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~--~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~ 112 (279)
..+|+|+|+ |-+|+.+++.|..++ ..++.++ .|. ..+ .+. +++..+.+...+ .+.+.++|+||+|++..
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G--~~~V~V~-nRs-~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKG--CTKMVVV-NRS-EERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCC--CCeEEEE-eCC-HHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 468999995 999999999998874 3344444 332 221 111 112122233322 12356899999998765
Q ss_pred ---hhhhhHHHHHhC----C--CEEEEcCCCCCCCC
Q 023678 113 ---ISKKFGPIAVEK----G--SIVVDNSSAFRMVE 139 (279)
Q Consensus 113 ---~s~~~~~~~~~a----G--~~VIDlS~~~R~~~ 139 (279)
+.+++++.+... | ..+||++=+--.++
T Consensus 341 ~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp 376 (519)
T PLN00203 341 TPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGA 376 (519)
T ss_pred CCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcc
Confidence 356666665421 2 37999987743343
|
|
| >PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.058 Score=53.24 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=55.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCCCCceee----eCCce----------------------eEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLS----FQDKA----------------------YTV 91 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s~G~~~~----~~~~~----------------------~~v 91 (279)
.+||+|+|+||-||...++.+.++ |+ ++++.++..+....... |.-+. ..+
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~--pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~v 134 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAEN--PDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEI 134 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhC--ccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEE
Confidence 479999999999999999999877 54 88888865544322111 10000 011
Q ss_pred e-ecC----ccCCCCCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 92 E-ELT----EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 92 ~-~~d----~~~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
. ..+ .....++|+|+.+......-.-.-.++++|..|.
T Consensus 135 l~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VA 177 (454)
T PLN02696 135 IPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIA 177 (454)
T ss_pred EECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEE
Confidence 1 000 0112468999999876544444456788998765
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.064 Score=50.12 Aligned_cols=26 Identities=12% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
|++|.|.||||++|+.|++.|.++++
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~ 26 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS 26 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC
Confidence 35899999999999999999998754
|
|
| >COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.058 Score=50.24 Aligned_cols=87 Identities=18% Similarity=0.036 Sum_probs=52.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee--cCCCCceeee-CC-ceeEEeecC-c-cC--CCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS--KRSAGKQLSF-QD-KAYTVEELT-E-DS--FDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s--~~s~G~~~~~-~~-~~~~v~~~d-~-~~--~~~~DvVf~a~g~ 111 (279)
++|.+.| ||++|.+.+|.|..+ |.++++.... ....|+.+.. .+ .+.-|..-+ . .+ +...++++...-.
T Consensus 3 ~~vvqyG-tG~vGv~air~l~ak--pe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~~ 79 (350)
T COG3804 3 LRVVQYG-TGSVGVAAIRGLLAK--PELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLLP 79 (350)
T ss_pred ceeEEec-cchHHHHHHHHHHcC--CCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceeccccceeeecccc
Confidence 6799999 999999999999988 8999886543 3345665542 22 223332211 1 11 1122333333222
Q ss_pred chhhhhHHHHHhCCCEEEEc
Q 023678 112 SISKKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDl 131 (279)
+-+-.++++.+|..||--
T Consensus 80 --~~~~y~rlL~aGiNVv~~ 97 (350)
T COG3804 80 --SVDEYARLLRAGINVVTP 97 (350)
T ss_pred --hHHHHHHHHHcCCceecc
Confidence 234456788999999954
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.022 Score=52.67 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=24.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.+|||.|.||||++|+.|++.|.++++
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~ 34 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGI 34 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC
Confidence 357999999999999999999998865
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.028 Score=54.98 Aligned_cols=96 Identities=21% Similarity=0.332 Sum_probs=56.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee--eCCceeEEeecC--ccCCCCCcEEEecCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS--FQDKAYTVEELT--EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~--~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~ 112 (279)
+..+|+|+| +|-+|+.+++.|...++ .++..+ +++... ..+. ++. .+..++ .+.+.++|+||.|+|..
T Consensus 181 ~~~~vlViG-aG~iG~~~a~~L~~~G~--~~V~v~-~r~~~ra~~la~~~g~---~~~~~~~~~~~l~~aDvVI~aT~s~ 253 (423)
T PRK00045 181 SGKKVLVIG-AGEMGELVAKHLAEKGV--RKITVA-NRTLERAEELAEEFGG---EAIPLDELPEALAEADIVISSTGAP 253 (423)
T ss_pred cCCEEEEEC-chHHHHHHHHHHHHCCC--CeEEEE-eCCHHHHHHHHHHcCC---cEeeHHHHHHHhccCCEEEECCCCC
Confidence 357999999 59999999999987643 233333 433211 1111 111 122211 12346789999999865
Q ss_pred h---hhhhHHHHHh----CCCEEEEcCCCCCCCCC
Q 023678 113 I---SKKFGPIAVE----KGSIVVDNSSAFRMVEN 140 (279)
Q Consensus 113 ~---s~~~~~~~~~----aG~~VIDlS~~~R~~~~ 140 (279)
. ..++++.+.. .+..+||++-+--.+++
T Consensus 254 ~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 254 HPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred CcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence 3 3455555432 35689999865434443
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.055 Score=50.11 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=58.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec-CCCCc-----------eeeeCC----------ceeEEeecCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK-----------QLSFQD----------KAYTVEELTE 96 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~-~s~G~-----------~~~~~~----------~~~~v~~~d~ 96 (279)
+.||+|||+ |..|+.+...++.+||+ ++++... +...+ ....+. ..+.+. .+.
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~-~~~ 79 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGVD---VLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFT-TDL 79 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEee-CCH
Confidence 358999995 99999999999988664 4444211 11001 000000 012221 123
Q ss_pred cCCCCCcEEEecCCCchhhhhH-----HHHH-hCCCEEEEcCCCCCCC
Q 023678 97 DSFDGVDIALFSAGGSISKKFG-----PIAV-EKGSIVVDNSSAFRMV 138 (279)
Q Consensus 97 ~~~~~~DvVf~a~g~~~s~~~~-----~~~~-~aG~~VIDlS~~~R~~ 138 (279)
++++++|+||.|.+.+...+.. ++.. ..|+.++++|+.+...
T Consensus 80 ~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~ 127 (286)
T PRK07819 80 GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM 127 (286)
T ss_pred HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 4568999999999877553322 3445 6789999999998653
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.13 Score=46.58 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=56.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe----ec-----------CCCCceeee--------CCceeEEee--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SK-----------RSAGKQLSF--------QDKAYTVEE-- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~----s~-----------~s~G~~~~~--------~~~~~~v~~-- 93 (279)
..||+|+|+ |-+|.++++.|...|.. ++.++. +. +..|++-.. ....+.+..
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGVG--TLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC--EEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 468999996 99999999999987544 333331 11 122321110 011222321
Q ss_pred --cCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 94 --LTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 94 --~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
++. +.++++|+||.|++...++.++.++ .+.|..+|..+
T Consensus 109 ~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~ 154 (245)
T PRK05690 109 ARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGA 154 (245)
T ss_pred ccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEee
Confidence 221 1257899999999988887766554 67899988743
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.038 Score=53.98 Aligned_cols=95 Identities=19% Similarity=0.266 Sum_probs=55.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--ee--eCCceeEEeecCccCCCCCcEEEecCCCch-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LS--FQDKAYTVEELTEDSFDGVDIALFSAGGSI- 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~--~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~- 113 (279)
..+|+|+|+ |-+|+.+++.|..++ ..++.++ +++. .+. +. ++...+.+.++ .+.+.++|+||+|++...
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G--~~~V~v~-~rs~-~ra~~la~~~g~~~i~~~~l-~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKG--VGKILIA-NRTY-ERAEDLAKELGGEAVKFEDL-EEYLAEADIVISSTGAPHP 253 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCC--CCEEEEE-eCCH-HHHHHHHHHcCCeEeeHHHH-HHHHhhCCEEEECCCCCCc
Confidence 478999995 999999999998763 3344444 3322 111 11 11111111111 133468999999998653
Q ss_pred --hhhhHHHHHh---CCCEEEEcCCCCCCCC
Q 023678 114 --SKKFGPIAVE---KGSIVVDNSSAFRMVE 139 (279)
Q Consensus 114 --s~~~~~~~~~---aG~~VIDlS~~~R~~~ 139 (279)
..+++..+.. .++.+||++-+--.++
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 3455554433 2458999985533344
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.063 Score=49.55 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.++|.|.||||++|+.+++.|.++++
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~ 30 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY 30 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 36899999999999999999998854
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.11 Score=48.56 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=62.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.++.||+-|..+|.+++ ..+....++. .++ .+....+|+|+.|+|... -+-
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~---atVt~~hs~t---------------~~l-~~~~~~ADIVV~avG~~~--~i~ 216 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAG---ATVTICHSKT---------------RDL-AAHTRQADIVVAAVGKRN--VLT 216 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC---CEEEEecCCC---------------CCH-HHHhhhCCEEEEcCCCcC--ccC
Confidence 5799999999999999999998752 3433332210 011 123468999999999642 344
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
+...+.|+.|||.+-.+ ..++ -.+-.|+.+..+.
T Consensus 217 ~~~ik~gavVIDVGin~-~~~g--kl~GDVd~~~v~~ 250 (285)
T PRK14189 217 ADMVKPGATVIDVGMNR-DDAG--KLCGDVDFAGVKE 250 (285)
T ss_pred HHHcCCCCEEEEccccc-cCCC--CeeCCccHHHHHh
Confidence 57788999999988665 2222 2566677666553
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.051 Score=50.46 Aligned_cols=69 Identities=23% Similarity=0.447 Sum_probs=40.0
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeE-EeecCccCCC-CCcEEEecCCCchhhh
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYT-VEELTEDSFD-GVDIALFSAGGSISKK 116 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~-v~~~d~~~~~-~~DvVf~a~g~~~s~~ 116 (279)
|+|-|+||+||+.|...|...+| ++..+ +|+.....-.+ +..+. ...++ +... ++|+|+--.|.....+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh---~v~il-tR~~~~~~~~~-~~~v~~~~~~~-~~~~~~~DavINLAG~~I~~r 71 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH---QVTIL-TRRPPKASQNL-HPNVTLWEGLA-DALTLGIDAVINLAGEPIAER 71 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC---eEEEE-EcCCcchhhhc-Cccccccchhh-hcccCCCCEEEECCCCccccc
Confidence 57999999999999999988766 34445 44433221111 00111 11111 1122 6999998888665533
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.043 Score=57.01 Aligned_cols=91 Identities=20% Similarity=0.270 Sum_probs=55.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce-eeeCCceeEEeecC-ccCCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~-~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.||+||| .|.+|..+.+.|.+.+++ .++..+ +++..... ....+.... ...+ .+.+.++|+||+|++.....+.
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~-~~V~~~-d~~~~~~~~a~~~g~~~~-~~~~~~~~~~~aDvVilavp~~~~~~v 79 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLA-REVVAV-DRRAKSLELAVSLGVIDR-GEEDLAEAVSGADVIVLAVPVLAMEKV 79 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCC-CEEEEE-ECChhHHHHHHHCCCCCc-ccCCHHHHhcCCCEEEECCCHHHHHHH
Confidence 5899999 799999999999887642 234333 33221100 000110000 0111 1224688999999998877776
Q ss_pred HHHHH---hCCCEEEEcCCC
Q 023678 118 GPIAV---EKGSIVVDNSSA 134 (279)
Q Consensus 118 ~~~~~---~aG~~VIDlS~~ 134 (279)
+..+. ..++.|+|.++.
T Consensus 80 l~~l~~~~~~~~ii~d~~sv 99 (735)
T PRK14806 80 LADLKPLLSEHAIVTDVGST 99 (735)
T ss_pred HHHHHHhcCCCcEEEEcCCC
Confidence 66554 467889998874
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.032 Score=54.57 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=54.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecC--ccCCCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELT--EDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~~s 114 (279)
..||.|+|| |-+|+.+++.|.+++ ..++. +.+|. ..+ .+........+..++ .+.+..+|+||+|+++..-
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~g--~~~I~-V~nRt-~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTALA--PKQIM-LANRT-IEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcC--CCEEE-EECCC-HHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCe
Confidence 468999995 999999999998874 33443 33443 222 221110011222222 2346789999999987533
Q ss_pred hhhHHHHHhCCCEEEEcCCCCCCCCC
Q 023678 115 KKFGPIAVEKGSIVVDNSSAFRMVEN 140 (279)
Q Consensus 115 ~~~~~~~~~aG~~VIDlS~~~R~~~~ 140 (279)
--...........+||++=+--.+++
T Consensus 256 vi~~~~~~~~~~~~iDLavPRdidp~ 281 (414)
T PRK13940 256 IVTCKYVGDKPRVFIDISIPQALDPK 281 (414)
T ss_pred eECHHHhCCCCeEEEEeCCCCCCCcc
Confidence 21122222334578999876433443
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.073 Score=49.54 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=61.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|++|.+|+-+..+|.+++ ..+....+ +. + ++ .+.+.++|+|+.|+|... -+
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~g---atVtv~~~-~t--~------------~L-~~~~~~aDIvI~AtG~~~--~v 216 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNAN---ATVTICHS-RT--Q------------NL-PELVKQADIIVGAVGKPE--LI 216 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCC---CEEEEEeC-Cc--h------------hH-HHHhccCCEEEEccCCCC--cC
Confidence 35799999999999999999998763 25444432 11 1 01 123468999999997433 34
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-...++.|+.|||..-.. .++. ++-+++.+.+..
T Consensus 217 ~~~~lk~gavViDvg~n~-~~~~---~~GDvd~~~~~~ 250 (283)
T PRK14192 217 KKDWIKQGAVVVDAGFHP-RDGG---GVGDIELQGIEE 250 (283)
T ss_pred CHHHcCCCCEEEEEEEee-cCCC---CcccccHHHhhc
Confidence 456788999999986432 2221 355677666653
|
|
| >PLN02700 homoserine dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.08 Score=51.23 Aligned_cols=28 Identities=14% Similarity=-0.025 Sum_probs=25.3
Q ss_pred CcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 102 VDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 102 ~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
.++++.|+++....++.++++++|+.||
T Consensus 110 ~~ViVD~T~s~~~~~~y~~aL~~G~hVV 137 (377)
T PLN02700 110 GLVVVDCSASMETIGALNEAVDLGCCIV 137 (377)
T ss_pred CCEEEECCCChHHHHHHHHHHHCCCeEE
Confidence 5999999998777789999999999998
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.18 Score=46.27 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=52.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec------CCCCceeeeCCceeEEe--ec-CccC-CCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK------RSAGKQLSFQDKAYTVE--EL-TEDS-FDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~------~s~G~~~~~~~~~~~v~--~~-d~~~-~~~~DvVf~a~ 109 (279)
|||+|+| .|.+|..+...|.+.+|. +..+... +..|..+.....+..+. .. +.++ ..++|++|.|+
T Consensus 1 mkI~IiG-~G~iG~~~a~~L~~~g~~---V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVG-AGAVGGTFGGRLLEAGRD---VTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEEC-CCHHHHHHHHHHHHCCCc---eEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence 5899999 699999999999987653 3334321 11122222111111111 01 1122 36789999999
Q ss_pred CCchhhhhHHHHHh---CCCEEEEcCCC
Q 023678 110 GGSISKKFGPIAVE---KGSIVVDNSSA 134 (279)
Q Consensus 110 g~~~s~~~~~~~~~---aG~~VIDlS~~ 134 (279)
++....+..+.+.. .+..||.+...
T Consensus 77 k~~~~~~~~~~l~~~~~~~~~ii~~~nG 104 (305)
T PRK12921 77 KAYQLDAAIPDLKPLVGEDTVIIPLQNG 104 (305)
T ss_pred cccCHHHHHHHHHhhcCCCCEEEEeeCC
Confidence 98877776665543 45666655443
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.028 Score=52.87 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=27.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++++||.|.|||||+|+.|++.|.++++ +++++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~---~V~~~ 45 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQ---TVIGL 45 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCC---EEEEE
Confidence 3456999999999999999999998753 55555
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.038 Score=53.65 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=45.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCc----eEEEEE-eec---CCCCceeeeCC------ceeEEeecCccCCCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPY----RSIKML-ASK---RSAGKQLSFQD------KAYTVEELTEDSFDGVD 103 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~----~~l~~l-~s~---~s~G~~~~~~~------~~~~v~~~d~~~~~~~D 103 (279)
+..||+|+||+|.||..++-.|...+.-. +.|+++ .+. ...|..+...+ ..+.+..-+.+++.++|
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaD 122 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAD 122 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCC
Confidence 36899999999999999999988775322 345444 121 11222211110 12333332346788999
Q ss_pred EEEecCCC
Q 023678 104 IALFSAGG 111 (279)
Q Consensus 104 vVf~a~g~ 111 (279)
+|+++.|.
T Consensus 123 IVVitAG~ 130 (387)
T TIGR01757 123 WALLIGAK 130 (387)
T ss_pred EEEECCCC
Confidence 99999875
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.07 Score=50.24 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=44.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeee------CCceeEEee-cCccCCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF------QDKAYTVEE-LTEDSFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~------~~~~~~v~~-~d~~~~~~~DvVf~a~ 109 (279)
.+||+|+|| |.||..+.-.|...+ -..+++++...+. .|..... ... ..+.. -+.+++.++|+|+.+.
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~-~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~-~~v~~~~dy~~~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKG-LADELVLVDVVEDKLKGEAMDLQHGSAFLKN-PKIEADKDYSVTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCccHHHHHHHHHHHhhccCCC-CEEEECCCHHHhCCCCEEEECC
Confidence 479999996 999999999888773 2346776643322 2322111 111 13332 2345688999999987
Q ss_pred CC
Q 023678 110 GG 111 (279)
Q Consensus 110 g~ 111 (279)
|.
T Consensus 80 G~ 81 (312)
T cd05293 80 GA 81 (312)
T ss_pred CC
Confidence 75
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.049 Score=47.67 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=26.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.++|.|.||+|.+|+.+++.|.++++ +++.+.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~---~V~~~~ 37 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA---EVIVVD 37 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC---EEEEEe
Confidence 46899999999999999999998754 555553
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.057 Score=50.92 Aligned_cols=92 Identities=14% Similarity=0.154 Sum_probs=55.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee--C-CceeEEeecC--ccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--Q-DKAYTVEELT--EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~--~-~~~~~v~~~d--~~~~~~~DvVf~a~g~~ 112 (279)
..+++|+| +|..|+..++.+... ..++.+.+.+|.... ..+.. . ...+.+...+ .+.+.++|+|+.|+++.
T Consensus 127 ~~~v~iiG-aG~~a~~~~~al~~~--~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 127 AKTLCLIG-TGGQAKGQLEAVLAV--RDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK 203 (325)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhc--CCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC
Confidence 46899999 799999888877543 334445555553211 11110 0 0012222222 22357899999999987
Q ss_pred hhhhhHHHHHhCCCEEEEcCCCC
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
...+. ..++.|+.|+-..++.
T Consensus 204 -~p~i~-~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 204 -TPVFS-EKLKKGVHINAVGSFM 224 (325)
T ss_pred -CcchH-HhcCCCcEEEecCCCC
Confidence 34455 7789999998776653
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.032 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=21.5
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFP 65 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p 65 (279)
|.|+|||||+|+.|++.|.++++.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~ 24 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHE 24 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCc
Confidence 689999999999999999998553
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.037 Score=48.98 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=27.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
++.+++.|.||+|.+|+.+++.|.++++ +++.+.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~---~V~~~~ 42 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA---RVHVCD 42 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEe
Confidence 3457999999999999999999998854 444443
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.12 Score=40.50 Aligned_cols=80 Identities=18% Similarity=0.281 Sum_probs=50.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ecCccCCCCCcEEEecCCCc-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTEDSFDGVDIALFSAGGS-ISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d~~~~~~~DvVf~a~g~~-~s~ 115 (279)
..+|.|+| .|-+|..=++.|.+.+ .++.+++ ++. .... ..+... ++. .++.++|+||.|++.. ..+
T Consensus 7 ~~~vlVvG-gG~va~~k~~~Ll~~g---A~v~vis-~~~--~~~~---~~i~~~~~~~~-~~l~~~~lV~~at~d~~~n~ 75 (103)
T PF13241_consen 7 GKRVLVVG-GGPVAARKARLLLEAG---AKVTVIS-PEI--EFSE---GLIQLIRREFE-EDLDGADLVFAATDDPELNE 75 (103)
T ss_dssp T-EEEEEE-ESHHHHHHHHHHCCCT---BEEEEEE-SSE--HHHH---TSCEEEESS-G-GGCTTESEEEE-SS-HHHHH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCC---CEEEEEC-Cch--hhhh---hHHHHHhhhHH-HHHhhheEEEecCCCHHHHH
Confidence 57999999 5999999999998863 5666664 332 1000 112222 222 5678899999999764 556
Q ss_pred hhHHHHHhCCCEEE
Q 023678 116 KFGPIAVEKGSIVV 129 (279)
Q Consensus 116 ~~~~~~~~aG~~VI 129 (279)
++...+.+.|..|=
T Consensus 76 ~i~~~a~~~~i~vn 89 (103)
T PF13241_consen 76 AIYADARARGILVN 89 (103)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHhhCCEEEE
Confidence 66666777888763
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.063 Score=47.47 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
+.+++.|.||||.+|+.+++.|.++++
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~ 32 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA 32 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC
Confidence 356899999999999999999998854
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.071 Score=50.04 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=52.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHc-CCCCceEEEEEeecCCCCceeee--C----CceeEEeecCc-cCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSF--Q----DKAYTVEELTE-DSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~-~~~p~~~l~~l~s~~s~G~~~~~--~----~~~~~v~~~d~-~~~~~~DvVf~a~g 110 (279)
..+|+|+| +|..|+..++.+.. + +..++.+. +|. ..+...+ . +....+.+ +. +...++|+|++|++
T Consensus 125 ~~~v~iiG-~G~~a~~~~~al~~~~--~~~~V~V~-~Rs-~~~a~~~a~~~~~~g~~~~~~~-~~~~av~~aDIVi~aT~ 198 (314)
T PRK06141 125 ASRLLVVG-TGRLASLLALAHASVR--PIKQVRVW-GRD-PAKAEALAAELRAQGFDAEVVT-DLEAAVRQADIISCATL 198 (314)
T ss_pred CceEEEEC-CcHHHHHHHHHHHhcC--CCCEEEEE-cCC-HHHHHHHHHHHHhcCCceEEeC-CHHHHHhcCCEEEEeeC
Confidence 47899999 79999999986554 4 55555544 432 2221111 0 11122211 12 23568999999998
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
.... -+-...++.|. +||..+.+
T Consensus 199 s~~p-vl~~~~l~~g~-~i~~ig~~ 221 (314)
T PRK06141 199 STEP-LVRGEWLKPGT-HLDLVGNF 221 (314)
T ss_pred CCCC-EecHHHcCCCC-EEEeeCCC
Confidence 7621 12235567888 67777754
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.16 Score=50.06 Aligned_cols=89 Identities=22% Similarity=0.264 Sum_probs=60.3
Q ss_pred CCEEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC-CCCcEEEecCCCchh
Q 023678 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s 114 (279)
..+|+||||| |-.|..+++.|.+++|.. ++..+.-+. ..+ .+ +.+.. +.+++ ..+|+++.|++....
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g-~v~~Vnp~~---~~i--~G--~~~~~-sl~~lp~~~Dlavi~vp~~~~ 77 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKG-KIYPVNPKA---GEI--LG--VKAYP-SVLEIPDPVDLAVIVVPAKYV 77 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCC-cEEEECCCC---Ccc--CC--ccccC-CHHHCCCCCCEEEEecCHHHH
Confidence 4679999998 678999999999887643 555553221 111 11 11111 11112 368999999999999
Q ss_pred hhhHHHHHhCCCE-EEEcCCCCC
Q 023678 115 KKFGPIAVEKGSI-VVDNSSAFR 136 (279)
Q Consensus 115 ~~~~~~~~~aG~~-VIDlS~~~R 136 (279)
.+.+.++.++|++ +|=+|+-|.
T Consensus 78 ~~~l~e~~~~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 78 PQVVEECGEKGVKGAVVITAGFK 100 (447)
T ss_pred HHHHHHHHhcCCCEEEEECCCcc
Confidence 9999999999985 334677774
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.032 Score=53.01 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=60.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee---CCceeEEeecC-----ccCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF---QDKAYTVEELT-----EDSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~---~~~~~~v~~~d-----~~~~~~~DvVf~a~g 110 (279)
...+.|.|||||+|+-+.+.|..+++.- ++++|+ .++.-.. -+.+..+.++. .+..+.++||+.|.|
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~~~----aLAgRs-~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvG 80 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGLTA----ALAGRS-SAKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVG 80 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCCch----hhccCC-HHHHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEeccc
Confidence 4679999999999999999999885432 565543 3321110 12222222221 123468999999999
Q ss_pred Cc--hhhhhHHHHHhCCCEEEEcCCC
Q 023678 111 GS--ISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 111 ~~--~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
.. ....++...+.+|.--.|+++.
T Consensus 81 Pyt~~g~plv~aC~~~GTdY~DiTGE 106 (382)
T COG3268 81 PYTRYGEPLVAACAAAGTDYADITGE 106 (382)
T ss_pred cccccccHHHHHHHHhCCCeeecccc
Confidence 75 3466777778899999999985
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.067 Score=49.23 Aligned_cols=89 Identities=15% Similarity=0.277 Sum_probs=52.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee--CCc-eeEEeecC-ccCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QDK-AYTVEELT-EDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~--~~~-~~~v~~~d-~~~~~~~DvVf~a~g~~~ 113 (279)
..+|.|+|+ |-+|+.+++.|...+ ..++.++ +|+.. .+.+.. ... .+.+ +.+ .+.+.++|+|+.|++.+.
T Consensus 123 ~k~vlVlGa-Gg~a~ai~~aL~~~g--~~~V~v~-~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 123 GKRILILGA-GGAARAVILPLLDLG--VAEITIV-NRTVERAEELAKLFGALGKAEL-DLELQEELADFDLIINATSAGM 197 (278)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcC--CCEEEEE-eCCHHHHHHHHHHhhhccceee-cccchhccccCCEEEECCcCCC
Confidence 458999995 999999999998773 3454444 44321 111111 100 1222 222 134567999999999876
Q ss_pred hh-----hhHHHHHhCCCEEEEcC
Q 023678 114 SK-----KFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 114 s~-----~~~~~~~~aG~~VIDlS 132 (279)
.. .+....+..+..|+|+.
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEee
Confidence 42 22234456677788873
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.079 Score=49.44 Aligned_cols=69 Identities=16% Similarity=0.318 Sum_probs=41.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee--e------CCceeEEeecCccCCCCCcEEEecCCC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--F------QDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~--~------~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
||+|+|+ |.+|+.+...|...+. ..+++++......-+... . ......+...+.+++.++|+|+.|+|.
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~-~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGI-ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence 8999995 9999999999988732 135666632222111111 0 011222332233457899999999986
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.15 Score=48.62 Aligned_cols=104 Identities=16% Similarity=0.301 Sum_probs=64.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcC--CCCceE--EE-EEeecCCCC--ceeee----CCcee-----------EEeecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDR--DFPYRS--IK-MLASKRSAG--KQLSF----QDKAY-----------TVEELT 95 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~--~~p~~~--l~-~l~s~~s~G--~~~~~----~~~~~-----------~v~~~d 95 (279)
+..||+|+| +|..|+.+.+.+.+. .||.++ +. .....+-.| +.+.. .+.+. .+...|
T Consensus 20 ~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 20 DPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred CceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 358999999 799999999998643 233332 11 122223334 22221 11111 111122
Q ss_pred -ccCCCCCcEEEecCCCchhhhhHHHH---HhCCCEEEEcCCCCCCCCCCc
Q 023678 96 -EDSFDGVDIALFSAGGSISKKFGPIA---VEKGSIVVDNSSAFRMVENVP 142 (279)
Q Consensus 96 -~~~~~~~DvVf~a~g~~~s~~~~~~~---~~aG~~VIDlS~~~R~~~~vp 142 (279)
.+...++|++++++||.....+.+++ .+.++..|+++--|-..++.|
T Consensus 99 l~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~ 149 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGP 149 (372)
T ss_pred HHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCC
Confidence 22346899999999999988888777 468888999988876654443
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.1 Score=48.87 Aligned_cols=71 Identities=23% Similarity=0.356 Sum_probs=42.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeeeCC-----ceeEEeecCccCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSFQD-----KAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~~~-----~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
|||+|||+ |+||..+...|..+++ ..++.++..... .|......+ ....+..-+.+++.++|+||+|.+..
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~-~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGL-ASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-CCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 58999996 9999999999988742 245555532211 121111100 11222222345678999999998863
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.092 Score=42.77 Aligned_cols=91 Identities=20% Similarity=0.273 Sum_probs=53.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee----cCCC-----------Cceeee----------CCceeEEee
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRSA-----------GKQLSF----------QDKAYTVEE 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s----~~s~-----------G~~~~~----------~~~~~~v~~ 93 (279)
..||+|+| .|-+|.++++.|...|. -++.++-. .... |+.-.. +..++...+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv--~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGV--GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP 78 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTT--SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCC--CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee
Confidence 36899999 59999999999988754 34444421 1111 221100 112222222
Q ss_pred --cCc----cCCCCCcEEEecCCCchhhhhHH-HHHhCCCEEEEcC
Q 023678 94 --LTE----DSFDGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNS 132 (279)
Q Consensus 94 --~d~----~~~~~~DvVf~a~g~~~s~~~~~-~~~~aG~~VIDlS 132 (279)
++. +.++++|+||+|++...++.+.. .+.+.|.++|+.+
T Consensus 79 ~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 79 EKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp SHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 211 12358999999999876665554 4567899998754
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.21 Score=43.63 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=24.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKM 71 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~ 71 (279)
|+|.|.||+|.+|+++.+.|.+++ +...+..
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~-~~~~v~~ 31 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERY-PDATVHA 31 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhC-CCCEEEE
Confidence 489999999999999999998864 2344433
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.097 Score=43.25 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=30.2
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA 78 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~ 78 (279)
|+|+|+||-||++-++.+.++. +.++++.++..++.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~-d~f~v~~Lsa~~n~ 36 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP-DKFEVVALSAGSNI 36 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEESSTH
T ss_pred CEEEcCCcHHHHHHHHHHHhCC-CceEEEEEEcCCCH
Confidence 6899999999999999999882 36899998765543
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.15 Score=44.66 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=52.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec---------------CCCCceeee--------CCceeEEe--e
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---------------RSAGKQLSF--------QDKAYTVE--E 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~---------------~s~G~~~~~--------~~~~~~v~--~ 93 (279)
..||.|+|+.| +|.++++.|...|.- ++..+... +..|++-.. ...++.+. .
T Consensus 21 ~s~VlIiG~gg-lG~evak~La~~GVg--~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 21 SARILLIGLKG-LGAEIAKNLVLSGIG--SLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred hCcEEEEcCCH-HHHHHHHHHHHcCCC--EEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 36899999755 999999999987543 33334211 122321110 01122222 1
Q ss_pred --cC---ccCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEc
Q 023678 94 --LT---EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDN 131 (279)
Q Consensus 94 --~d---~~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDl 131 (279)
++ .+.+.++|+|++|++...++..+.++ .+.|.++|..
T Consensus 98 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 98 DDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred cCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 11 12257899999998876665555544 5677777643
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.077 Score=52.04 Aligned_cols=91 Identities=14% Similarity=0.228 Sum_probs=52.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC------CCce-eeeCC-c------eeEEeecCccCCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQ-LSFQD-K------AYTVEELTEDSFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s------~G~~-~~~~~-~------~~~v~~~d~~~~~~~Dv 104 (279)
.|||+||| .||+|.-+...|.+ + ++++.+...+. .|.. +...+ . .+.+.. +.+.+.++|+
T Consensus 6 ~mkI~vIG-lGyvGlpmA~~la~-~---~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~-~~~~~~~adv 79 (425)
T PRK15182 6 EVKIAIIG-LGYVGLPLAVEFGK-S---RQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTS-EIEKIKECNF 79 (425)
T ss_pred CCeEEEEC-cCcchHHHHHHHhc-C---CEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEe-CHHHHcCCCE
Confidence 47999999 89999999999876 3 35555532111 1211 00000 0 011211 1223578999
Q ss_pred EEecCCCchhh------hhH-------HHHHhCCCEEEEcCCCC
Q 023678 105 ALFSAGGSISK------KFG-------PIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 105 Vf~a~g~~~s~------~~~-------~~~~~aG~~VIDlS~~~ 135 (279)
+|.|+|+.... +++ ...+..|..|||-|.-.
T Consensus 80 vii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~ 123 (425)
T PRK15182 80 YIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY 123 (425)
T ss_pred EEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 99999976211 111 22345788999877643
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.072 Score=50.49 Aligned_cols=87 Identities=16% Similarity=0.295 Sum_probs=51.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.++|+||| .|.+|+.+.+.|.. +| ..++... +++ ...... . ..... ++ .+.+.++|+|++|+|.....+.
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~-~~-g~~V~~~-d~~-~~~~~~-~--~~~~~~~l-~ell~~aDvIvl~lP~t~~t~~ 216 (332)
T PRK08605 146 DLKVAVIG-TGRIGLAVAKIFAK-GY-GSDVVAY-DPF-PNAKAA-T--YVDYKDTI-EEAVEGADIVTLHMPATKYNHY 216 (332)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHh-cC-CCEEEEE-CCC-ccHhHH-h--hccccCCH-HHHHHhCCEEEEeCCCCcchhh
Confidence 47999999 79999999999843 22 2344433 322 111110 0 01111 11 1235789999999987654333
Q ss_pred H-----HHHHhCCCEEEEcCCC
Q 023678 118 G-----PIAVEKGSIVVDNSSA 134 (279)
Q Consensus 118 ~-----~~~~~aG~~VIDlS~~ 134 (279)
. -...+.|+.+|+.|-.
T Consensus 217 li~~~~l~~mk~gailIN~sRG 238 (332)
T PRK08605 217 LFNADLFKHFKKGAVFVNCARG 238 (332)
T ss_pred hcCHHHHhcCCCCcEEEECCCC
Confidence 3 2234678899987754
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.049 Score=50.84 Aligned_cols=88 Identities=16% Similarity=0.221 Sum_probs=54.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee---eCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS---FQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~---~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
+||++|| .|..|.-+.+.|.+.+| ++.... | ...+... ..+ ........+...++|+||.|++.+...+
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~---~v~v~~-r-~~~ka~~~~~~~G--a~~a~s~~eaa~~aDvVitmv~~~~~V~ 72 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH---EVTVYN-R-TPEKAAELLAAAG--ATVAASPAEAAAEADVVITMLPDDAAVR 72 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC---EEEEEe-C-ChhhhhHHHHHcC--CcccCCHHHHHHhCCEEEEecCCHHHHH
Confidence 4899999 99999999999999865 343342 2 2222111 111 1111111233468999999999876644
Q ss_pred hHHH----H---HhCCCEEEEcCCCC
Q 023678 117 FGPI----A---VEKGSIVVDNSSAF 135 (279)
Q Consensus 117 ~~~~----~---~~aG~~VIDlS~~~ 135 (279)
-+-. . ++.|..|||.|..-
T Consensus 73 ~V~~g~~g~~~~~~~G~i~IDmSTis 98 (286)
T COG2084 73 AVLFGENGLLEGLKPGAIVIDMSTIS 98 (286)
T ss_pred HHHhCccchhhcCCCCCEEEECCCCC
Confidence 3321 2 34699999999863
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.24 Score=44.81 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=24.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+|.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~---~Vi~~ 34 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW---RVFAT 34 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 5799999999999999999988753 55444
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.11 Score=50.44 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=49.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC------CCCcee-eeCC-------ceeEEe-ecCc-cCCCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR------SAGKQL-SFQD-------KAYTVE-ELTE-DSFDGVD 103 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~------s~G~~~-~~~~-------~~~~v~-~~d~-~~~~~~D 103 (279)
|||+|+| .||+|.-+...++. +|+ ++.+.... ..|... ...+ ....+. ..+. +...++|
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~-G~~---VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad 75 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ-NHE---VVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDAD 75 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-CCc---EEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCC
Confidence 4899999 79999999987774 553 44442111 111110 0000 011222 2222 2346899
Q ss_pred EEEecCCCchhh-------hhHHH----H--HhCCCEEEEcCCCC
Q 023678 104 IALFSAGGSISK-------KFGPI----A--VEKGSIVVDNSSAF 135 (279)
Q Consensus 104 vVf~a~g~~~s~-------~~~~~----~--~~aG~~VIDlS~~~ 135 (279)
++|.|+|..... .++.. + +..|..||+-|.-.
T Consensus 76 ~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~ 120 (388)
T PRK15057 76 YVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVP 120 (388)
T ss_pred EEEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecC
Confidence 999999976221 11111 1 25688899877643
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.11 Score=49.26 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=41.9
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCC----CceEEEEEeecCCC----CceeeeCCce------eEEeecCccCCCCCcEEE
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRSA----GKQLSFQDKA------YTVEELTEDSFDGVDIAL 106 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~----p~~~l~~l~s~~s~----G~~~~~~~~~------~~v~~~d~~~~~~~DvVf 106 (279)
||+|+||+|.||..+...|..++. ...+++++...... |......+.. +....-+.+++.++|+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 699999999999999999987643 22257777432222 2221111110 111111135678899999
Q ss_pred ecCCC
Q 023678 107 FSAGG 111 (279)
Q Consensus 107 ~a~g~ 111 (279)
.+.|.
T Consensus 81 itAG~ 85 (324)
T TIGR01758 81 LVGAF 85 (324)
T ss_pred EcCCC
Confidence 98875
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.45 Score=45.33 Aligned_cols=91 Identities=13% Similarity=0.200 Sum_probs=53.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.++|+||| .|.+|+.+.+.|...++ +++....+.+...... ..+ ..+.+. .+....+|+||+|++.......
T Consensus 17 gktIgIIG-~GsmG~AlA~~L~~sG~---~Vvv~~r~~~~s~~~A~~~G--~~~~s~-~eaa~~ADVVvLaVPd~~~~~V 89 (330)
T PRK05479 17 GKKVAIIG-YGSQGHAHALNLRDSGV---DVVVGLREGSKSWKKAEADG--FEVLTV-AEAAKWADVIMILLPDEVQAEV 89 (330)
T ss_pred CCEEEEEe-eHHHHHHHHHHHHHCCC---EEEEEECCchhhHHHHHHCC--CeeCCH-HHHHhcCCEEEEcCCHHHHHHH
Confidence 36899999 79999999999988754 4443322212111111 111 112111 2335678999999998877766
Q ss_pred H-HHHH---hCCCEEEEcCCCCCC
Q 023678 118 G-PIAV---EKGSIVVDNSSAFRM 137 (279)
Q Consensus 118 ~-~~~~---~aG~~VIDlS~~~R~ 137 (279)
+ +.+. +.|..| ..++-|..
T Consensus 90 ~~~~I~~~Lk~g~iL-~~a~G~~i 112 (330)
T PRK05479 90 YEEEIEPNLKEGAAL-AFAHGFNI 112 (330)
T ss_pred HHHHHHhcCCCCCEE-EECCCCCh
Confidence 6 4343 347666 45555543
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.087 Score=48.48 Aligned_cols=92 Identities=12% Similarity=0.163 Sum_probs=52.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee-------eCC---------------ceeEEeecCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS-------FQD---------------KAYTVEELTE 96 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~-------~~~---------------~~~~v~~~d~ 96 (279)
.||+||| .|.+|..+...|.+++|+ +..+ .++... .... ..+ ..+.+.. +.
T Consensus 2 ~~V~VIG-~G~mG~~iA~~la~~G~~---V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~ 75 (288)
T PRK09260 2 EKLVVVG-AGVMGRGIAYVFAVSGFQ---TTLV-DIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL-DL 75 (288)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhCCCc---EEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-cH
Confidence 4799999 599999999999887654 3333 222100 0000 000 0012221 22
Q ss_pred -cCCCCCcEEEecCCCchhh--hhH---HHHHhCCCEEEEcCCCCCC
Q 023678 97 -DSFDGVDIALFSAGGSISK--KFG---PIAVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 97 -~~~~~~DvVf~a~g~~~s~--~~~---~~~~~aG~~VIDlS~~~R~ 137 (279)
+.+.++|+||.|++..... .+. .+....++.+..++|.+..
T Consensus 76 ~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~ 122 (288)
T PRK09260 76 KAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP 122 (288)
T ss_pred HHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 3467899999999987542 222 2334567766556666543
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.11 Score=49.07 Aligned_cols=71 Identities=13% Similarity=0.337 Sum_probs=44.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceeee------CCceeEEee-cCccCCCCCcEEEec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSF------QDKAYTVEE-LTEDSFDGVDIALFS 108 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~~------~~~~~~v~~-~d~~~~~~~DvVf~a 108 (279)
+.+||+|+|| |.+|..+...|..+++ .+++++.-.. ..|..+.. .+....+.. -+.+++.++|+|+.+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~--~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVit 80 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL--GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVVVIT 80 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC--CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCCCEEEEC
Confidence 3579999997 9999999998888753 4565553222 12322211 111223332 233467899999999
Q ss_pred CCC
Q 023678 109 AGG 111 (279)
Q Consensus 109 ~g~ 111 (279)
.+.
T Consensus 81 ag~ 83 (319)
T PTZ00117 81 AGV 83 (319)
T ss_pred CCC
Confidence 854
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.1 Score=47.68 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=51.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee--CC-ceeEEeecCccCCCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QD-KAYTVEELTEDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~--~~-~~~~v~~~d~~~~~~~DvVf~a~g~~~s 114 (279)
..++.|+|+ |-+|+.++..|.+.+ .++..+ +|+.. .+.+.. .. ........+.....++|+|+.|+|.+..
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g---~~v~v~-~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~ 191 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKAD---CNVIIA-NRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMS 191 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCC---CEEEEE-eCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCC
Confidence 358999996 899999999998763 254444 33211 111110 00 0112222222233578999999997643
Q ss_pred hh-----hHHHHHhCCCEEEEcCC
Q 023678 115 KK-----FGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 115 ~~-----~~~~~~~aG~~VIDlS~ 133 (279)
.. +....+..|..|+|++-
T Consensus 192 ~~~~~~~~~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 192 GNIDEPPVPAEKLKEGMVVYDMVY 215 (270)
T ss_pred CCCCCCCCCHHHcCCCCEEEEecc
Confidence 21 22344567888888854
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.44 Score=44.56 Aligned_cols=106 Identities=22% Similarity=0.281 Sum_probs=65.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.++ ...+....|+. + ++ .+....+|+|+.|.|... -+-
T Consensus 155 Gk~vvViGrS~iVGkPla~lL~~~---~aTVtichs~T---~------------~l-~~~~~~ADIvIsAvGkp~--~i~ 213 (287)
T PRK14173 155 GKEVVVVGRSNIVGKPLAALLLRE---DATVTLAHSKT---Q------------DL-PAVTRRADVLVVAVGRPH--LIT 213 (287)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC---CCEEEEeCCCC---C------------CH-HHHHhhCCEEEEecCCcC--ccC
Confidence 579999999999999999999875 23433333221 0 00 122467899999998653 234
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCce-eeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPL-VIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vpl-vvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
+...+.|+.|||.+-.+-.+++..+ .+-.|+ +..... ...+.-.||=
T Consensus 214 ~~~vk~GavVIDVGin~~~~~~gk~~l~GDVd-~~v~~~-----a~~iTPVPGG 261 (287)
T PRK14173 214 PEMVRPGAVVVDVGINRVGGNGGRDILTGDVH-PEVAEV-----AGALTPVPGG 261 (287)
T ss_pred HHHcCCCCEEEEccCccccCCCCceeeecccc-HhHHhh-----CcEEecCCCC
Confidence 5667899999998766421112121 455566 334321 2445555654
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.18 Score=49.07 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=64.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc------eeeeCCceeEEeecCccCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK------QLSFQDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~------~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
+.++|.|+|+.+ +|..+.+.|.++|+ ++..+ +++.... .+...+..+...+...+...+.|+||.+++.
T Consensus 4 ~~k~v~iiG~g~-~G~~~A~~l~~~G~---~V~~~-d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 4 KGKKVLVVGAGV-SGLALAKFLKKLGA---KVILT-DEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHCCC---EEEEE-eCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 357899999766 99999999998864 44433 3322110 0100111111112112234578999999998
Q ss_pred chhhhhHHHHHhCCCEEEEcCC-CCCCCCCCceeeccCCH
Q 023678 112 SISKKFGPIAVEKGSIVVDNSS-AFRMVENVPLVIPEVNP 150 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~-~~R~~~~vplvvPevN~ 150 (279)
....+.+..+.+.|+.|+.-.. .+|....-..+|-+=|+
T Consensus 79 ~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~G 118 (450)
T PRK14106 79 PLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNG 118 (450)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCc
Confidence 7778888888999998875433 23322222345666664
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.059 Score=52.62 Aligned_cols=30 Identities=37% Similarity=0.670 Sum_probs=26.1
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCC
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFP 65 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p 65 (279)
++++..|.|+||||.+|+.+++.|.+++|.
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~ 105 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGFS 105 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCCe
Confidence 344689999999999999999999999753
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.13 Score=47.48 Aligned_cols=93 Identities=17% Similarity=0.292 Sum_probs=55.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cc---e-------ee---eCCc-----------eeEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK---Q-------LS---FQDK-----------AYTVE 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~---~-------~~---~~~~-----------~~~v~ 92 (279)
..||+|+| .|+.|..+...|..+++ ++.++ .++.. .+ . +. ..+. .+...
T Consensus 3 i~~I~ViG-aG~mG~~iA~~la~~G~---~V~l~-d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 77 (291)
T PRK06035 3 IKVIGVVG-SGVMGQGIAQVFARTGY---DVTIV-DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS 77 (291)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHhcCC---eEEEE-eCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee
Confidence 45899999 59999999999998865 34444 22211 00 0 00 0000 01111
Q ss_pred ecCccCCCCCcEEEecCCCchh--hhhHHHH---HhCCCEEEEcCCCCCC
Q 023678 93 ELTEDSFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFRM 137 (279)
Q Consensus 93 ~~d~~~~~~~DvVf~a~g~~~s--~~~~~~~---~~aG~~VIDlS~~~R~ 137 (279)
.+.+.+.++|+||.|++.... +++..++ ...++.++.+++....
T Consensus 78 -~~~~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~ 126 (291)
T PRK06035 78 -TSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMI 126 (291)
T ss_pred -CCHHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCH
Confidence 122345789999999988752 3443333 3557888888887654
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.084 Score=51.84 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=39.3
Q ss_pred hhhhccCCCCCCCCCcceeeeec------ccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 11 THFISKLPANKPRTKPMFTRVRM------SYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..|-|.-|+....| |..|++.- +..-++++|.|.||||++|+.|++.|.++|+ +++++
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~---~V~~~ 77 (442)
T PLN02572 14 KAFTSASPASAQST-PAVTELATPSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGY---EVAIV 77 (442)
T ss_pred hhhccCCccccccc-cceecccCCCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEE
Confidence 45777777765444 44444321 1233467899999999999999999998754 45554
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.12 Score=45.95 Aligned_cols=30 Identities=10% Similarity=0.326 Sum_probs=24.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+++.|.||||.+|+.+.+.|.++++ ++..+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~---~V~~~ 31 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW---RVGAY 31 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC---eEEEE
Confidence 5799999999999999999998753 45555
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.16 Score=44.17 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=23.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.++|.|.||||.+|+++++.|.++++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~ 30 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGA 30 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998754
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.26 Score=43.28 Aligned_cols=91 Identities=10% Similarity=0.130 Sum_probs=52.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec----CC-------------CCceeee--------CCceeEEee
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RS-------------AGKQLSF--------QDKAYTVEE 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~----~s-------------~G~~~~~--------~~~~~~v~~ 93 (279)
..||.|+|+.| +|.++++.|...|.. ++..+... +. .|++-.. ....+.+..
T Consensus 19 ~s~VlviG~gg-lGsevak~L~~~GVg--~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 19 SAKVLIIGAGA-LGAEIAKNLVLAGID--SITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred hCcEEEECCCH-HHHHHHHHHHHcCCC--EEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 36899999766 999999999987544 33333211 11 2221110 011222221
Q ss_pred ----cC------ccCCCCCcEEEecCCCchhhhhHH-HHHhCCCEEEEcC
Q 023678 94 ----LT------EDSFDGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNS 132 (279)
Q Consensus 94 ----~d------~~~~~~~DvVf~a~g~~~s~~~~~-~~~~aG~~VIDlS 132 (279)
+. .+.+.++|+|+.|.....++.+.. ...+.+.++|..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred EecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 11 112578999999988765555544 4467788887654
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.1 Score=49.42 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=55.6
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--------CCceeee-C-Cc----eeEEeecCc-cCCC
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--------AGKQLSF-Q-DK----AYTVEELTE-DSFD 100 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--------~G~~~~~-~-~~----~~~v~~~d~-~~~~ 100 (279)
...++||+|+| +|..|..+...|.+++ + ++.+. ++. .+....+ . +. .+.+.. |. +.+.
T Consensus 4 ~~~~mkI~IiG-aGa~G~alA~~La~~g-~---v~l~~-~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~-d~~~a~~ 76 (341)
T PRK12439 4 AKREPKVVVLG-GGSWGTTVASICARRG-P---TLQWV-RSAETADDINDNHRNSRYLGNDVVLSDTLRATT-DFAEAAN 76 (341)
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHCC-C---EEEEe-CCHHHHHHHHhcCCCcccCCCCcccCCCeEEEC-CHHHHHh
Confidence 34568999999 6999999999999874 2 22232 221 1111111 1 11 111211 21 2356
Q ss_pred CCcEEEecCCCchhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 101 GVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 101 ~~DvVf~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
++|+||+|+++...++.++++. ..+..||.++.-+
T Consensus 77 ~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 77 CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 8899999999888777776654 3455677665544
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.32 Score=46.49 Aligned_cols=94 Identities=17% Similarity=0.284 Sum_probs=57.3
Q ss_pred EEEEECcCcHHHHHHHHHHHcCC------CCceEEEEEeecCC-C-Cceee------------eCCc----eeEEeecCc
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRD------FPYRSIKMLASKRS-A-GKQLS------------FQDK----AYTVEELTE 96 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~------~p~~~l~~l~s~~s-~-G~~~~------------~~~~----~~~v~~~d~ 96 (279)
||+|+| +|..|..|...|.+.+ |. .++.+. .++. . +..+. .++. ++.... |.
T Consensus 1 kI~VIG-aG~wGtALA~~la~ng~~~~~~~~-~~V~lw-~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~-dl 76 (342)
T TIGR03376 1 RVAVVG-SGNWGTAIAKIVAENARALPELFE-ESVRMW-VFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP-DL 76 (342)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCcccccCC-ceEEEE-EeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC-CH
Confidence 689999 6999999999998754 10 233333 3311 0 11110 0111 122211 22
Q ss_pred -cCCCCCcEEEecCCCchhhhhHHHHH---hCCCEEEEcCCCCCCC
Q 023678 97 -DSFDGVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSAFRMV 138 (279)
Q Consensus 97 -~~~~~~DvVf~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~R~~ 138 (279)
+...++|++|+|+|+..-++.+.++. ..+..+|.++--+-.+
T Consensus 77 ~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 77 VEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred HHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 23578999999999988877777653 4577888888877544
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.12 Score=50.70 Aligned_cols=91 Identities=18% Similarity=0.293 Sum_probs=54.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeCCceeEEeecC--ccCCCCCcEEEecCCCc---
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGS--- 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~--- 112 (279)
..+|.|||| |-.|+-+.+.|.++ ...++. ++.|.. ..+.+.... ...+..++ ...+..+|+||+|+++.
T Consensus 178 ~~~vlvIGA-Gem~~lva~~L~~~--g~~~i~-IaNRT~erA~~La~~~-~~~~~~l~el~~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 178 DKKVLVIGA-GEMGELVAKHLAEK--GVKKIT-IANRTLERAEELAKKL-GAEAVALEELLEALAEADVVISSTSAPHPI 252 (414)
T ss_pred cCeEEEEcc-cHHHHHHHHHHHhC--CCCEEE-EEcCCHHHHHHHHHHh-CCeeecHHHHHHhhhhCCEEEEecCCCccc
Confidence 568999995 99999999999988 344443 444321 111111100 12222222 23457899999998765
Q ss_pred hhhhhHHHHHhC--CCEEEEcCCC
Q 023678 113 ISKKFGPIAVEK--GSIVVDNSSA 134 (279)
Q Consensus 113 ~s~~~~~~~~~a--G~~VIDlS~~ 134 (279)
+.++.++.+.+. +..+||++-+
T Consensus 253 i~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 253 ITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred cCHHHHHHHHhcccCeEEEEecCC
Confidence 345555555432 2468999876
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.15 Score=50.46 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=45.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC-C----C-ceEEEEEeecCC--CCceeeeC------CceeEEeecCccCCCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD-F----P-YRSIKMLASKRS--AGKQLSFQ------DKAYTVEELTEDSFDGV 102 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~-~----p-~~~l~~l~s~~s--~G~~~~~~------~~~~~v~~~d~~~~~~~ 102 (279)
.+..||+|+||+|.||..++-.|...+ | + ..+++.+.-... .|..+... ..++.+..-+.+++.++
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kda 177 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDA 177 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcC
Confidence 346899999999999999999887651 0 1 125555532211 12222111 11233333234678999
Q ss_pred cEEEecCCC
Q 023678 103 DIALFSAGG 111 (279)
Q Consensus 103 DvVf~a~g~ 111 (279)
|+|+.+.|.
T Consensus 178 DiVVitAG~ 186 (444)
T PLN00112 178 EWALLIGAK 186 (444)
T ss_pred CEEEECCCC
Confidence 999999886
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.18 Score=46.53 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=53.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce------------eeeCC-----------ceeEEeecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ------------LSFQD-----------KAYTVEELT 95 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~------------~~~~~-----------~~~~v~~~d 95 (279)
..||+||| .|..|..+.+.|..+++ ++.++. ++..... +...+ ..+.+.+ +
T Consensus 4 ~~~V~vIG-~G~mG~~iA~~l~~~G~---~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~ 77 (295)
T PLN02545 4 IKKVGVVG-AGQMGSGIAQLAAAAGM---DVWLLD-SDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT-N 77 (295)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHhcCC---eEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC-C
Confidence 36899999 69999999999998764 444442 2211000 00000 0112221 2
Q ss_pred ccCCCCCcEEEecCCCchh--hhhHHH---HHhCCCEEEEcCCCCCC
Q 023678 96 EDSFDGVDIALFSAGGSIS--KKFGPI---AVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 96 ~~~~~~~DvVf~a~g~~~s--~~~~~~---~~~aG~~VIDlS~~~R~ 137 (279)
.+.++++|+||.|++.+.. ..+..+ .+..++.++.+++....
T Consensus 78 ~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~ 124 (295)
T PLN02545 78 LEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISI 124 (295)
T ss_pred HHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 2346789999999984433 333332 34567777767776644
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.14 Score=48.12 Aligned_cols=69 Identities=20% Similarity=0.364 Sum_probs=43.3
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceee------eCC-ceeEEeecCccCCCCCcEEEecCCC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLS------FQD-KAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~------~~~-~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
||+|||| |.||..+.-.|..++. .-+++++...+ ..|..+. +.. ....+..-+.+++.++|+|+.+.|.
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~-~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGL-FSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 6999997 9999999888877632 23677764322 1232211 111 1234443234678899999999875
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.14 Score=45.36 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=25.9
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
|++.++.+++.|.||+|.+|+++.+.|.++++
T Consensus 1 m~~~l~~k~~lItGas~gIG~~~a~~l~~~G~ 32 (255)
T PRK06463 1 YSMRFKGKVALITGGTRGIGRAIAEAFLREGA 32 (255)
T ss_pred CCCCcCCCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 33334457899999999999999999998754
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.073 Score=51.70 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCce
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR 67 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~ 67 (279)
|||+|+| |||||-..--.|++.||..+
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv 27 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVV 27 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEE
Confidence 6899999 99999999999999887543
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.22 Score=45.86 Aligned_cols=94 Identities=14% Similarity=0.240 Sum_probs=55.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cceee----------eCC-----------ceeEEeec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLS----------FQD-----------KAYTVEEL 94 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~~~~----------~~~-----------~~~~v~~~ 94 (279)
+..||+||| .|..|..+...|..++| ++.++ .++.. .+... ..+ ..+.+.+
T Consensus 3 ~~~kI~vIG-aG~mG~~iA~~la~~G~---~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~- 76 (292)
T PRK07530 3 AIKKVGVIG-AGQMGNGIAHVCALAGY---DVLLN-DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT- 76 (292)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCC---eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC-
Confidence 346899999 59999999999998765 34444 33211 00000 001 0122221
Q ss_pred CccCCCCCcEEEecCCCchh--hhhHH---HHHhCCCEEEEcCCCCCC
Q 023678 95 TEDSFDGVDIALFSAGGSIS--KKFGP---IAVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 95 d~~~~~~~DvVf~a~g~~~s--~~~~~---~~~~aG~~VIDlS~~~R~ 137 (279)
+.+.+.++|+||.|++.... +.+.. ..+..++.++.+++....
T Consensus 77 ~~~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 124 (292)
T PRK07530 77 DLEDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI 124 (292)
T ss_pred CHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 22346789999999987532 23332 334567788877777653
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.21 Score=43.63 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..+|.|.||||.+|+++.+.|.++++
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~ 31 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA 31 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc
Confidence 46899999999999999999998854
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.21 Score=46.36 Aligned_cols=90 Identities=11% Similarity=0.287 Sum_probs=50.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee------eC-----C------ceeEEeecCc-cCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS------FQ-----D------KAYTVEELTE-DSFD 100 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~------~~-----~------~~~~v~~~d~-~~~~ 100 (279)
.||+||| .|.+|..+...|...+| ++..+. ++... .... .. . ..+.+. .+. +.+.
T Consensus 5 ~~I~vIG-aG~mG~~iA~~l~~~g~---~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~ 78 (311)
T PRK06130 5 QNLAIIG-AGTMGSGIAALFARKGL---QVVLID-VMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAAVS 78 (311)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhCCC---eEEEEE-CCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHHhc
Confidence 6899999 59999999999988765 444442 21100 0000 00 0 001121 122 2357
Q ss_pred CCcEEEecCCCch--hhhhHHHH---HhCCCEEEEcCCCC
Q 023678 101 GVDIALFSAGGSI--SKKFGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 101 ~~DvVf~a~g~~~--s~~~~~~~---~~aG~~VIDlS~~~ 135 (279)
++|+||.|++... ..++...+ ...++.|+.+++..
T Consensus 79 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~ 118 (311)
T PRK06130 79 GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL 118 (311)
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 8999999998764 33444333 34455565555543
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.035 Score=47.67 Aligned_cols=87 Identities=11% Similarity=0.172 Sum_probs=47.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
..+|+|+| .|.+|+++.++|..- ..++.++. +...... .+........+++ +.+..+|+|+.++|-+. ++.+
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~~f---G~~V~~~d-~~~~~~~-~~~~~~~~~~~l~-ell~~aDiv~~~~plt~~T~~l 108 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLKAF---GMRVIGYD-RSPKPEE-GADEFGVEYVSLD-ELLAQADIVSLHLPLTPETRGL 108 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHHHT---T-EEEEEE-SSCHHHH-HHHHTTEEESSHH-HHHHH-SEEEE-SSSSTTTTTS
T ss_pred CCEEEEEE-EcCCcCeEeeeeecC---CceeEEec-ccCChhh-hcccccceeeehh-hhcchhhhhhhhhcccccccee
Confidence 47999999 799999999999864 33655553 3221111 0100112222222 23467999999998432 2222
Q ss_pred H--H--HHHhCCCEEEEcC
Q 023678 118 G--P--IAVEKGSIVVDNS 132 (279)
Q Consensus 118 ~--~--~~~~aG~~VIDlS 132 (279)
. + ...+.|+.+|..+
T Consensus 109 i~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 109 INAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp BSHHHHHTSTTTEEEEESS
T ss_pred eeeeeeeccccceEEEecc
Confidence 1 1 2245788888654
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.25 Score=44.71 Aligned_cols=106 Identities=16% Similarity=0.240 Sum_probs=61.7
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEE--eecC-----------CCCceeee--------CCceeEEe----ecC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML--ASKR-----------SAGKQLSF--------QDKAYTVE----ELT 95 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l--~s~~-----------s~G~~~~~--------~~~~~~v~----~~d 95 (279)
||.|+| .|-+|.++++.|...|+..+.++=. .+.+ ..|+.-.. ...++.+. .++
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 589999 5899999999998886544433211 1111 22321110 01112221 121
Q ss_pred ------ccCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcCCCCCCCCCCceeeccC
Q 023678 96 ------EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMVENVPLVIPEV 148 (279)
Q Consensus 96 ------~~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS~~~R~~~~vplvvPev 148 (279)
.+.+++.|+||.|++.-.++.++.++ .+.+..+||.+. .-+.-.+..++|+.
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~-~G~~G~v~vi~p~~ 138 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGT-EGFKGNAQVILPGM 138 (234)
T ss_pred hhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcc-cCCceEEEEEcCCC
Confidence 11247899999999999888877655 678999998543 33333344455543
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.14 Score=48.34 Aligned_cols=106 Identities=12% Similarity=0.150 Sum_probs=60.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeee----CCceeEEeecCccCCCCCcEEEecCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSF----QDKAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~----~~~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
+..+++|+| +|..|+..++.|... ..++-+.+.+++.... .+.. .+..+.+.+-..+...++|+|+.|++..
T Consensus 127 ~~~~lgiiG-~G~qA~~~l~al~~~--~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 127 DSSVLGIIG-AGRQAWTQLEALSRV--FDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC
Confidence 357899999 799999888887654 3344455555432211 1100 1111222211123457899999999875
Q ss_pred hhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
. .-+....++.|+.|.-.+++.. ...|+.++.+.
T Consensus 204 ~-P~~~~~~l~~g~~v~~vGs~~p-------~~~Eld~~~l~ 237 (325)
T TIGR02371 204 K-PVVKADWVSEGTHINAIGADAP-------GKQELDPEILK 237 (325)
T ss_pred C-cEecHHHcCCCCEEEecCCCCc-------ccccCCHHHHh
Confidence 3 1223455689999876665431 13455555554
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.16 Score=44.36 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=26.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.+++.|.||+|.+|+.+++.|.++++ +++.+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~---~v~~~ 37 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA---TVAFN 37 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC---EEEEE
Confidence 347899999999999999999998754 45555
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.49 Score=44.10 Aligned_cols=92 Identities=22% Similarity=0.376 Sum_probs=60.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.+++ ..+....|+. + ++ .+....+|+|+.|.|...- +-
T Consensus 156 Gk~vvViGrS~iVGkPla~lL~~~~---atVtichs~T---~------------~l-~~~~~~ADIvI~AvG~p~~--i~ 214 (282)
T PRK14169 156 GKRVVIVGRSNIVGRPLAGLMVNHD---ATVTIAHSKT---R------------NL-KQLTKEADILVVAVGVPHF--IG 214 (282)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC---CEEEEECCCC---C------------CH-HHHHhhCCEEEEccCCcCc--cC
Confidence 5799999999999999999998762 3333332211 0 00 1123678999999986532 44
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
....+.|+.|||.+-.+ ..++ -++-.|+.+...
T Consensus 215 ~~~vk~GavVIDvGin~-~~~g--kl~GDVd~~~v~ 247 (282)
T PRK14169 215 ADAVKPGAVVIDVGISR-GADG--KLLGDVDEAAVA 247 (282)
T ss_pred HHHcCCCcEEEEeeccc-cCCC--CeeecCcHHHHH
Confidence 55678999999987665 2222 255667766655
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.54 E-value=1 Score=41.86 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=21.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
++|+|+| .|++|..+...|.+++|
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~ 26 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGH 26 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCC
Confidence 5899999 79999999999998866
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.093 Score=48.80 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=26.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||||++|+.|++.|.++++ +++.+
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~ 35 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGY---KVVVI 35 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 56899999999999999999998754 45555
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.58 Score=35.17 Aligned_cols=63 Identities=22% Similarity=0.473 Sum_probs=41.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhh-hh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK-KF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~-~~ 117 (279)
..+++|+|+ |.+|+-+.+.|.+.+ ..++ .+.++ |++|.|++...-- +.
T Consensus 23 ~~~v~i~G~-G~~g~~~a~~l~~~~--~~~v-~v~~r---------------------------di~i~~~~~~~~~~~~ 71 (86)
T cd05191 23 GKTVVVLGA-GEVGKGIAKLLADEG--GKKV-VLCDR---------------------------DILVTATPAGVPVLEE 71 (86)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC--CCEE-EEEcC---------------------------CEEEEcCCCCCCchHH
Confidence 468999996 999999999998763 1222 22222 9999998765332 21
Q ss_pred HHHHHhCCCEEEEcC
Q 023678 118 GPIAVEKGSIVVDNS 132 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS 132 (279)
.-.....+..|||++
T Consensus 72 ~~~~~~~~~~v~~~a 86 (86)
T cd05191 72 ATAKINEGAVVIDLA 86 (86)
T ss_pred HHHhcCCCCEEEecC
Confidence 113345678888864
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.33 Score=43.31 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=25.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||||.+|+++.+.|.++++ +++++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~---~V~~~ 34 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY---RVFGT 34 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 35799999999999999999998754 44444
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.36 Score=42.42 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=56.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec---------------CCCCceee--------eCCceeEEe---
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---------------RSAGKQLS--------FQDKAYTVE--- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~---------------~s~G~~~~--------~~~~~~~v~--- 92 (279)
..||.|+| .|-+|.++++.|...|.. ++.++... +..|+.-. .....+.+.
T Consensus 21 ~~~VlviG-~GglGs~ia~~La~~Gv~--~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 21 NSHVLIIG-AGGLGSPAALYLAGAGVG--TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHcCCC--eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 46899999 599999999999988543 33333211 11222111 001122222
Q ss_pred -ecCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 93 -ELTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 93 -~~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
.++. +.+.++|+||.|++...++.+..++ .+.|+++|+.+
T Consensus 98 ~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 98 ERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAA 143 (202)
T ss_pred hcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 1221 1257899999999988777766554 67888888755
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.15 Score=44.54 Aligned_cols=31 Identities=13% Similarity=0.348 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.|++|.+|..+++.|.++++ +++++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~---~Vi~~ 37 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV---NVGLL 37 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46799999999999999999988753 55554
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.15 Score=46.23 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.7
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
||.|+||||++|+.+++.|.++++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~ 24 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH 24 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC
Confidence 588999999999999999998754
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.57 Score=46.80 Aligned_cols=91 Identities=12% Similarity=0.202 Sum_probs=51.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee-----------------CCc-eeEEeecCc-cCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-----------------QDK-AYTVEELTE-DSF 99 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-----------------~~~-~~~v~~~d~-~~~ 99 (279)
+||+||| +|.+|..+...|..+|| ++.+. .++... ..+.. ... .+.+.+ +. +.+
T Consensus 5 ~kIavIG-~G~MG~~iA~~la~~G~---~V~v~-D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~-~~~ea~ 78 (495)
T PRK07531 5 MKAACIG-GGVIGGGWAARFLLAGI---DVAVF-DPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCA-SLAEAV 78 (495)
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCC---eEEEE-eCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeC-CHHHHh
Confidence 5899999 79999999999998876 34444 222110 00000 000 122221 22 346
Q ss_pred CCCcEEEecCCCchh--hhhHH---HHHhCCCEEEEcCCCCC
Q 023678 100 DGVDIALFSAGGSIS--KKFGP---IAVEKGSIVVDNSSAFR 136 (279)
Q Consensus 100 ~~~DvVf~a~g~~~s--~~~~~---~~~~aG~~VIDlS~~~R 136 (279)
.++|+||.|++.... +++.. .++..++.+..+++.+.
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~ 120 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFL 120 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 789999999998853 22222 33445665555555543
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.12 Score=48.19 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=24.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
++++|.|.||+|++|+.|++.|.++++
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~ 34 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGY 34 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCC
Confidence 357899999999999999999998754
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.22 Score=47.93 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=28.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++.++.|+|++|++|+.|++.|.+++ +..++..+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~-~~~~irv~ 36 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENE-LKLEIRVV 36 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcc-cccEEEEe
Confidence 45799999999999999999999884 35666655
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.26 Score=48.74 Aligned_cols=108 Identities=16% Similarity=0.236 Sum_probs=69.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceee---eCCceeEEeecCccCCCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS---FQDKAYTVEELTEDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~---~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s 114 (279)
.+||+|+| -|-.|+.+.+.|.+++ .++.+.-.+... +.... ..+.++.....+.+++..+|+|+..-|-...
T Consensus 7 ~~kv~V~G-LG~sG~a~a~~L~~~G---~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~ 82 (448)
T COG0771 7 GKKVLVLG-LGKSGLAAARFLLKLG---AEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPT 82 (448)
T ss_pred CCEEEEEe-cccccHHHHHHHHHCC---CeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCC
Confidence 57999999 7999999999999875 344444322222 11000 1111222222223557789999999888888
Q ss_pred hhhHHHHHhCCCEEE-EcCCCCCCCCCCc-eeeccCCH
Q 023678 115 KKFGPIAVEKGSIVV-DNSSAFRMVENVP-LVIPEVNP 150 (279)
Q Consensus 115 ~~~~~~~~~aG~~VI-DlS~~~R~~~~vp-lvvPevN~ 150 (279)
..++.++.++|+.|+ |+.=.+|.....| +.+-+=|.
T Consensus 83 ~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNG 120 (448)
T COG0771 83 HPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNG 120 (448)
T ss_pred CHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCc
Confidence 889999999999988 6666666542333 33555554
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.12 Score=48.34 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=25.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||||++|+.|++.|.++++ +++++
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~---~V~~~ 35 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY---TVRAT 35 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45444
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.11 Score=52.10 Aligned_cols=153 Identities=12% Similarity=0.160 Sum_probs=81.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeC----Cc-eeEEeecCcc----CCCCCcEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQ----DK-AYTVEELTED----SFDGVDIALF 107 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~----~~-~~~v~~~d~~----~~~~~DvVf~ 107 (279)
+.+|++|| .|..|+.+.+.|.+++| ++.+. .| +..+ .+... +. .+...+ +++ .+..+|+||+
T Consensus 6 ~~~IG~IG-LG~MG~~mA~nL~~~G~---~V~V~-NR-t~~k~~~l~~~~~~~Ga~~~~~a~-s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAG-LAVMGQNLALNIAEKGF---PISVY-NR-TTSKVDETVERAKKEGNLPLYGFK-DPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEe-eHHHHHHHHHHHHhCCC---eEEEE-CC-CHHHHHHHHHhhhhcCCcccccCC-CHHHHHhcCCCCCEEEE
Confidence 56899999 99999999999999866 44444 22 2221 11110 11 111111 122 2345999999
Q ss_pred cCCCchhhhhH-H---HHHhCCCEEEEcCCCCCCC----------CCCceeeccCCHH-hhhccccCCCCCcEEECCCCh
Q 023678 108 SAGGSISKKFG-P---IAVEKGSIVVDNSSAFRMV----------ENVPLVIPEVNPE-AMSGIKVGMGKGALIANPNCS 172 (279)
Q Consensus 108 a~g~~~s~~~~-~---~~~~aG~~VIDlS~~~R~~----------~~vplvvPevN~~-~i~~~~~~~~~~~iVanPgC~ 172 (279)
|++.+...+-+ . ..++.|-.|||.|...--+ .++.|+=-.|..- .-.. ....| .+|+.
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~------~G~~i-m~GG~ 151 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGAR------NGPSL-MPGGS 151 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhc------CCCeE-EecCC
Confidence 99988653332 2 3346799999999875211 1223333333321 1111 22323 55555
Q ss_pred HHHHHHhhhchhhhcCcc--EEEEEEeecccccChh
Q 023678 173 TIICLMAATPLHRRAKVT--RMVVSTYQAASGAGAA 206 (279)
Q Consensus 173 tt~l~laL~PL~~~~~i~--~v~vtt~q~vSGaG~~ 206 (279)
.-+ .-.++|+++...-+ .--...|-|-.|+|..
T Consensus 152 ~~a-~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~ 186 (493)
T PLN02350 152 FEA-YKNIEDILEKVAAQVDDGPCVTYIGPGGAGNF 186 (493)
T ss_pred HHH-HHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHH
Confidence 554 34567777765421 0012345666777744
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.17 Score=47.80 Aligned_cols=91 Identities=14% Similarity=0.132 Sum_probs=56.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeee--C---CceeEEeecCc-cCCCCCcEEEecCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSF--Q---DKAYTVEELTE-DSFDGVDIALFSAG 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~--~---~~~~~v~~~d~-~~~~~~DvVf~a~g 110 (279)
+..+++|+| +|..|+..++.|... +.++.+.+.+++.... .... . +..+.+.+ +. +.+. +|+|+.|+|
T Consensus 128 ~~~~vgiiG-~G~qa~~h~~al~~~--~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~-aDiVv~aTp 202 (326)
T PRK06046 128 DSKVVGIIG-AGNQARTQLLALSEV--FDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAE-DIEEACD-CDILVTTTP 202 (326)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhh--CCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeC-CHHHHhh-CCEEEEecC
Confidence 357899999 799999999988765 6677777766653211 1110 0 11122221 21 2234 899999999
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
+.. .-+-...++.|+.|.-.+++
T Consensus 203 s~~-P~~~~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 203 SRK-PVVKAEWIKEGTHINAIGAD 225 (326)
T ss_pred CCC-cEecHHHcCCCCEEEecCCC
Confidence 753 22334456899998766654
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.74 Score=39.53 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=52.4
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec----CC----------CCceeee--------CCceeEEe----ec
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RS----------AGKQLSF--------QDKAYTVE----EL 94 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~----~s----------~G~~~~~--------~~~~~~v~----~~ 94 (279)
||+|+|+ |-+|.++++.|...+...+. ++-.. .. .|+.-.. ....+.+. .+
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~--lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~ 77 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLK--LVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKI 77 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEE--EEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeec
Confidence 5899995 99999999999988654333 33111 11 2221110 01112221 22
Q ss_pred Cc----cCCCCCcEEEecCCCchhhh-hHHHHHhC-CCEEEEc
Q 023678 95 TE----DSFDGVDIALFSAGGSISKK-FGPIAVEK-GSIVVDN 131 (279)
Q Consensus 95 d~----~~~~~~DvVf~a~g~~~s~~-~~~~~~~a-G~~VIDl 131 (279)
+. +.+.++|+||.|++...++. +...+.+. |..+|-.
T Consensus 78 ~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 78 DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 22 23578999999998888876 44556666 8887744
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.1 Score=48.30 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=24.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|||.|.||||++|+.|++.|.++++ +++.+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~---~V~~~ 30 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVVIL 30 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC---eEEEE
Confidence 5899999999999999999988754 44444
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.32 Score=45.75 Aligned_cols=85 Identities=6% Similarity=0.115 Sum_probs=50.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeec-C-ccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-T-EDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~-d-~~~~~~~DvVf~a~g~~~s~~ 116 (279)
..+|+|+| .|.+|+++.+.|..-| .++..+. +.... . .+.. .+... + .+.+.++|+|++++|.+.+.+
T Consensus 136 g~tvgIvG-~G~IG~~vA~~l~afG---~~V~~~~-~~~~~--~--~~~~-~~~~~~~l~e~l~~aDvvv~~lPlt~~T~ 205 (312)
T PRK15469 136 DFTIGILG-AGVLGSKVAQSLQTWG---FPLRCWS-RSRKS--W--PGVQ-SFAGREELSAFLSQTRVLINLLPNTPETV 205 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEEe-CCCCC--C--CCce-eecccccHHHHHhcCCEEEECCCCCHHHH
Confidence 46999999 8999999999998653 3555443 22110 0 0101 11111 1 133578999999999765432
Q ss_pred -hHH----HHHhCCCEEEEcCC
Q 023678 117 -FGP----IAVEKGSIVVDNSS 133 (279)
Q Consensus 117 -~~~----~~~~aG~~VIDlS~ 133 (279)
+.. ...+.|+.+|+.+-
T Consensus 206 ~li~~~~l~~mk~ga~lIN~aR 227 (312)
T PRK15469 206 GIINQQLLEQLPDGAYLLNLAR 227 (312)
T ss_pred HHhHHHHHhcCCCCcEEEECCC
Confidence 221 12357888887653
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.31 Score=47.31 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=54.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCccC-CCCCcEEEecCCCchh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS 114 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~-~~~~DvVf~a~g~~~s 114 (279)
|+..+|.|+| -|.+|..+.+.|.+.++ ++... +++... ....... + .... ..+. ..++|++|.+.|....
T Consensus 1 ~~~~~i~iiG-lG~~G~slA~~l~~~G~---~V~g~-D~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~dlvV~s~gi~~~ 72 (418)
T PRK00683 1 MGLQRVVVLG-LGVTGKSIARFLAQKGV---YVIGV-DKSLEALQSCPYIH-E-RYLE-NAEEFPEQVDLVVRSPGIKKE 72 (418)
T ss_pred CCCCeEEEEE-ECHHHHHHHHHHHHCCC---EEEEE-eCCccccchhHHHh-h-hhcC-CcHHHhcCCCEEEECCCCCCC
Confidence 3456899999 69999999999988753 33333 222111 0000000 0 0001 1122 3578999999887777
Q ss_pred hhhHHHHHhCCCEEEE
Q 023678 115 KKFGPIAVEKGSIVVD 130 (279)
Q Consensus 115 ~~~~~~~~~aG~~VID 130 (279)
..++.+++++|+.|+.
T Consensus 73 ~~~l~~A~~~g~~vv~ 88 (418)
T PRK00683 73 HPWVQAAIASHIPVVT 88 (418)
T ss_pred cHHHHHHHHCCCcEEE
Confidence 8899999999998884
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.64 Score=43.46 Aligned_cols=97 Identities=19% Similarity=0.331 Sum_probs=61.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCC--ceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFP--YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p--~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
..+|.|+|.+..||+=|..+|.+++ + ...+....|+. + ++ .+....+|+|+.|+|... -
T Consensus 153 Gk~vvViGrS~iVGkPla~lL~~~~-~~~~AtVtvchs~T---~------------~l-~~~~~~ADIvV~AvG~p~--~ 213 (287)
T PRK14181 153 GRHVAIVGRSNIVGKPLAALLMQKH-PDTNATVTLLHSQS---E------------NL-TEILKTADIIIAAIGVPL--F 213 (287)
T ss_pred CCEEEEECCCccchHHHHHHHHhCc-CCCCCEEEEeCCCC---C------------CH-HHHHhhCCEEEEccCCcC--c
Confidence 5799999999999999999998651 2 23332222210 0 00 122467999999998652 3
Q ss_pred hHHHHHhCCCEEEEcCCCCCCCCC--CceeeccCCHHhhh
Q 023678 117 FGPIAVEKGSIVVDNSSAFRMVEN--VPLVIPEVNPEAMS 154 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~~~R~~~~--vplvvPevN~~~i~ 154 (279)
+-....+.|+.|||.+-.+-.++. ..-.+-.|+.+...
T Consensus 214 i~~~~ik~GavVIDvGin~~~~~~~~g~kl~GDVd~e~~~ 253 (287)
T PRK14181 214 IKEEMIAEKAVIVDVGTSRVPAANPKGYILVGDVDFNNVV 253 (287)
T ss_pred cCHHHcCCCCEEEEecccccccccCCCCeeEeccchHHHH
Confidence 445667899999998766521211 11356667766655
|
|
| >TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.17 Score=49.11 Aligned_cols=37 Identities=22% Similarity=0.489 Sum_probs=31.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSA 78 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s~ 78 (279)
+||+|+|+||-||.+-++.+.++ |+ ++++.++..+..
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~--~~~f~v~~Laa~~n~ 39 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHN--PDHFQVVALSAGKNV 39 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhC--ccccEEEEEEcCCCH
Confidence 58999999999999999998876 54 899988765543
|
1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis. |
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.24 Score=43.34 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~---~v~~~ 33 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA---KVAVF 33 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEe
Confidence 46899999999999999999998753 44444
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.6 Score=42.25 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=55.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee---------------cCCCCceeee--------CCceeEEee--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS---------------KRSAGKQLSF--------QDKAYTVEE-- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s---------------~~s~G~~~~~--------~~~~~~v~~-- 93 (279)
..||.|+| .|-+|.++++.|...|.. ++.++.. ....|++-.. ....+.+..
T Consensus 24 ~~~VlvvG-~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~ 100 (240)
T TIGR02355 24 ASRVLIVG-LGGLGCAASQYLAAAGVG--NLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN 100 (240)
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHcCCC--EEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 46899999 589999999999887543 3333311 1122321110 011222222
Q ss_pred --cCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 94 --LTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 94 --~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
++. +.+.++|+||.|++...++.+..++ .+.|+++|..+
T Consensus 101 ~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 101 AKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred ccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 221 1256899999999998887766544 67899888643
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.62 Score=41.97 Aligned_cols=97 Identities=10% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-e-CCceeEEe--ecCccC
Q 023678 23 RTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-F-QDKAYTVE--ELTEDS 98 (279)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~-~~~~~~v~--~~d~~~ 98 (279)
+.|||+-.+..+ ..+|.||| .|-|+..=++.|.+.+ .++.+++ ..-. ..+. . ....+.+. ++++.+
T Consensus 13 ~~~~~pi~l~~~----~~~VLVVG-GG~VA~RK~~~Ll~~g---A~VtVVa-p~i~-~el~~l~~~~~i~~~~r~~~~~d 82 (223)
T PRK05562 13 ENKYMFISLLSN----KIKVLIIG-GGKAAFIKGKTFLKKG---CYVYILS-KKFS-KEFLDLKKYGNLKLIKGNYDKEF 82 (223)
T ss_pred cCCEeeeEEECC----CCEEEEEC-CCHHHHHHHHHHHhCC---CEEEEEc-CCCC-HHHHHHHhCCCEEEEeCCCChHH
Confidence 467777777733 45999999 5999988777777653 4455553 3211 1110 0 01123332 344566
Q ss_pred CCCCcEEEecCCCc-hhhhhHHHHHhCCCEEE
Q 023678 99 FDGVDIALFSAGGS-ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 99 ~~~~DvVf~a~g~~-~s~~~~~~~~~aG~~VI 129 (279)
+.++++||.|++.. +.+++...+.+.|..|.
T Consensus 83 l~g~~LViaATdD~~vN~~I~~~a~~~~~lvn 114 (223)
T PRK05562 83 IKDKHLIVIATDDEKLNNKIRKHCDRLYKLYI 114 (223)
T ss_pred hCCCcEEEECCCCHHHHHHHHHHHHHcCCeEE
Confidence 78999999999875 44555555556677654
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.18 Score=44.79 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=26.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~ 39 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGA---RVVTT 39 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCC---EEEEE
Confidence 346899999999999999999998754 45444
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.12 Score=48.24 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
|||.|.||||++|+.|++.|.++++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~ 25 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ 25 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC
Confidence 4899999999999999999998754
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.16 Score=47.65 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=26.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+||.|.||+|++|+.|++.|.++++ +++.+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~---~V~~~ 40 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGY---TVHAT 40 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 57999999999999999999998754 44444
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.18 Score=46.25 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=26.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
..+|.|.||||++|+.+++.|.++|| +++.+.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~---~V~~~~ 37 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY---TVHAAV 37 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEE
Confidence 46899999999999999999998865 454443
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.29 Score=46.26 Aligned_cols=69 Identities=16% Similarity=0.358 Sum_probs=42.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceee------eCCceeEEee-cCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLS------FQDKAYTVEE-LTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~------~~~~~~~v~~-~d~~~~~~~DvVf~a~g 110 (279)
.||+||| .|.+|..+...+..+++ .+++++.-... .|+.+. +.+....+.. .|.+++.++|+|+.+.+
T Consensus 7 ~KI~IIG-aG~vG~~ia~~la~~gl--~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~aDiVI~tag 83 (321)
T PTZ00082 7 RKISLIG-SGNIGGVMAYLIVLKNL--GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAGSDVVIVTAG 83 (321)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC--CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCCCCEEEECCC
Confidence 6999999 59999999998887754 45555532211 122221 1112234442 23456789999999876
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 84 ~ 84 (321)
T PTZ00082 84 L 84 (321)
T ss_pred C
Confidence 5
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.65 Score=43.34 Aligned_cols=105 Identities=20% Similarity=0.272 Sum_probs=65.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.++.||+=|..+|.++. ....+....|+. + ++ .+....+|+|+.|+|... -+-
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~-~~atVtvchs~T---~------------~l-~~~~k~ADIvV~AvGkp~--~i~ 218 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRS-ENATVTLCHTGT---R------------DL-AAHTRRADIIVAAAGVAH--LVT 218 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhcc-CCCEEEEeCCCC---C------------CH-HHHHHhCCEEEEecCCcC--ccC
Confidence 5799999999999999999998731 123333332210 0 00 122467899999998752 244
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
....+.|+.|||.+-.+ ..++ -++-.++ +..... ...+.-.||=
T Consensus 219 ~~~ik~GavVIDvGin~-~~~g--kl~GDvd-~~v~~~-----a~~iTPVPGG 262 (284)
T PRK14193 219 ADMVKPGAAVLDVGVSR-AGDG--KLVGDVH-PDVWEV-----AGAVSPNPGG 262 (284)
T ss_pred HHHcCCCCEEEEccccc-cCCC--cEEeecC-HhHHhh-----CCEEeCCCCC
Confidence 56678999999987665 2222 2566677 444432 2445555653
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.14 Score=50.86 Aligned_cols=91 Identities=14% Similarity=0.277 Sum_probs=53.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeC----CceeEE-eecC--ccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ----DKAYTV-EELT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~----~~~~~v-~~~d--~~~~~~~DvVf~a~g~ 111 (279)
.+|+||| .|..|..|.+.|.+++| ++.+. .|+. .-..+... +..+.. .++. ...+.+.|+||+++++
T Consensus 2 ~~IgvIG-LG~MG~~lA~nL~~~G~---~V~v~-dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIG-LAVMGQNLALNIASRGF---KISVY-NRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEe-EhHHHHHHHHHHHHCCC---eEEEE-eCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 5899999 79999999999999876 44444 3321 11111110 111111 1111 1122357988888665
Q ss_pred c-hhhhhHHHH---HhCCCEEEEcCCCC
Q 023678 112 S-ISKKFGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 112 ~-~s~~~~~~~---~~aG~~VIDlS~~~ 135 (279)
+ ...+....+ ++.|..|||.+..+
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 5 344444433 46799999999875
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.31 Score=45.49 Aligned_cols=94 Identities=21% Similarity=0.298 Sum_probs=61.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|.+..||+=|..+|.+++ ..+....++. + ++ .+....+|+|+.|+|... -+
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~---atVt~chs~t---~------------~l-~~~~~~ADIvI~AvG~p~--~i 215 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNEN---ATVTYCHSKT---K------------NL-AELTKQADILIVAVGKPK--LI 215 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC---CEEEEEeCCc---h------------hH-HHHHHhCCEEEEecCCCC--cC
Confidence 35799999999999999999998762 3333332210 0 11 123467899999998653 24
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-+...+.|+.|||.+-.+ .+++ -.+-.++.+....
T Consensus 216 ~~~~ik~gavVIDvGi~~-~~~g--kl~GDvd~e~v~~ 250 (284)
T PRK14190 216 TADMVKEGAVVIDVGVNR-LENG--KLCGDVDFDNVKE 250 (284)
T ss_pred CHHHcCCCCEEEEeeccc-cCCC--CeeccCcHHHHhh
Confidence 456678999999987664 2222 2455667666553
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.45 Score=45.77 Aligned_cols=90 Identities=14% Similarity=0.258 Sum_probs=58.7
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee---CC--------------------ceeEEee
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF---QD--------------------KAYTVEE 93 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~---~~--------------------~~~~v~~ 93 (279)
.+.+||++|| .|.-|+-++.....- |.+++++++.++-.+.+.++ .+ ..+.+.+
T Consensus 15 G~PiRVGlIG-AG~mG~~ivtQi~~m--~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~ 91 (438)
T COG4091 15 GKPIRVGLIG-AGEMGTGIVTQIASM--PGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTD 91 (438)
T ss_pred CCceEEEEec-ccccchHHHHHHhhc--CCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEec
Confidence 3568999999 599999999999866 99999999655432211111 00 0122322
Q ss_pred -cC-ccCCCCCcEEEecCCC-chhhhhHHHHHhCCCEEE
Q 023678 94 -LT-EDSFDGVDIALFSAGG-SISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 94 -~d-~~~~~~~DvVf~a~g~-~~s~~~~~~~~~aG~~VI 129 (279)
.+ ......+|+++.|+|. .+..++.-.+..+|..+|
T Consensus 92 D~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlV 130 (438)
T COG4091 92 DAELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLV 130 (438)
T ss_pred chhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEE
Confidence 11 1112468999999986 456677777778887665
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.69 Score=43.44 Aligned_cols=100 Identities=19% Similarity=0.291 Sum_probs=63.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
+..+|.|+|.+..||+=|..+|.+++.. ...+....|+. + ++ .+....+|+|+.|+|... -
T Consensus 160 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T---~------------~l-~~~~~~ADIvVsAvGkp~--~ 221 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS---K------------NL-ARHCQRADILIVAAGVPN--L 221 (297)
T ss_pred CCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC---c------------CH-HHHHhhCCEEEEecCCcC--c
Confidence 3579999999999999999999875210 23333332211 0 00 122467999999987543 2
Q ss_pred hHHHHHhCCCEEEEcCCCCCCCC---CCceeeccCCHHhhhc
Q 023678 117 FGPIAVEKGSIVVDNSSAFRMVE---NVPLVIPEVNPEAMSG 155 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~~~R~~~---~vplvvPevN~~~i~~ 155 (279)
+-....+.|+.|||.+-.+-.++ +...++-.|+.+.+..
T Consensus 222 i~~~~ik~gavVIDvGin~~~~~~~~g~~~~~GDVdfe~v~~ 263 (297)
T PRK14168 222 VKPEWIKPGATVIDVGVNRVGTNESTGKAILSGDVDFDAVKE 263 (297)
T ss_pred cCHHHcCCCCEEEecCCCccCccccCCCcceeccccHHHHHh
Confidence 44566789999999876552111 2112567777766653
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.21 Score=47.33 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=51.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchh-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS-KKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s-~~~ 117 (279)
..+|+|+| .|.+|+.+.+.|..-+ .++.++ ++..... .... ......++ .+.+..+|+|++|+|-+.. +..
T Consensus 150 gktvgIiG-~G~IG~~vA~~l~~~G---~~V~~~-d~~~~~~-~~~~-~~~~~~~l-~ell~~aDiV~l~lP~t~~T~~~ 221 (333)
T PRK13243 150 GKTIGIIG-FGRIGQAVARRAKGFG---MRILYY-SRTRKPE-AEKE-LGAEYRPL-EELLRESDFVSLHVPLTKETYHM 221 (333)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCC---CEEEEE-CCCCChh-hHHH-cCCEecCH-HHHHhhCCEEEEeCCCChHHhhc
Confidence 57999999 7999999999997653 355444 3322111 0000 01112121 1235789999999986542 222
Q ss_pred H----HHHHhCCCEEEEcCC
Q 023678 118 G----PIAVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~----~~~~~aG~~VIDlS~ 133 (279)
. -...+.|+.+|+.|.
T Consensus 222 i~~~~~~~mk~ga~lIN~aR 241 (333)
T PRK13243 222 INEERLKLMKPTAILVNTAR 241 (333)
T ss_pred cCHHHHhcCCCCeEEEECcC
Confidence 2 122467899997764
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.63 Score=43.45 Aligned_cols=93 Identities=19% Similarity=0.267 Sum_probs=61.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+-+..+|.+++ ..+....++. + + + .+....+|+|+.|+|...- +-
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~g---AtVtv~hs~t---~-------~-----l-~~~~~~ADIvV~AvG~p~~--i~ 215 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNAG---ASVSVCHILT---K-------D-----L-SFYTQNADIVCVGVGKPDL--IK 215 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCC---CEEEEEeCCc---H-------H-----H-HHHHHhCCEEEEecCCCCc--CC
Confidence 5799999999999999999998763 3333332211 0 0 1 1234679999999986532 33
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
+...+.|+.|||.+-.+ .+++ -++-.++.+.+..
T Consensus 216 ~~~vk~GavVIDvGi~~-~~~g--klvGDvd~e~v~~ 249 (285)
T PRK14191 216 ASMVKKGAVVVDIGINR-LNDG--RLVGDVDFENVAP 249 (285)
T ss_pred HHHcCCCcEEEEeeccc-ccCC--ceeccccHHHHhh
Confidence 45668999999988765 2221 2456677666553
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.67 Score=45.09 Aligned_cols=96 Identities=19% Similarity=0.375 Sum_probs=61.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee----c----CC--------CCce---eee-------CCceeEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----K----RS--------AGKQ---LSF-------QDKAYTVE 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s----~----~s--------~G~~---~~~-------~~~~~~v~ 92 (279)
..+|+|+|+ |-+|..++..|.+. +..++.++-. . |+ .|+. ... .+..+...
T Consensus 176 ~~~VaIVG~-GG~GS~Va~~LAR~--GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~ 252 (393)
T PRK06153 176 GQRIAIIGL-GGTGSYILDLVAKT--PVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPH 252 (393)
T ss_pred hCcEEEEcC-CccHHHHHHHHHHc--CCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEE
Confidence 468999995 88899999999988 4556665521 1 22 2220 000 01112111
Q ss_pred --ecCc---cCCCCCcEEEecCCCchhhhhHHH-HHhCCCEEEEcCCCCCC
Q 023678 93 --ELTE---DSFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 93 --~~d~---~~~~~~DvVf~a~g~~~s~~~~~~-~~~aG~~VIDlS~~~R~ 137 (279)
.++. ..+.++|+||.|++...++.++-+ +.+.|..+||.+-....
T Consensus 253 ~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l~~ 303 (393)
T PRK06153 253 PEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGLEL 303 (393)
T ss_pred eecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeeccee
Confidence 1222 235789999999999999887754 46789999997766544
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.71 Score=43.15 Aligned_cols=95 Identities=19% Similarity=0.287 Sum_probs=60.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..+|.|+|.+..||+=|..+|.+++ +....+....++. + ++ .+....+|+|+.|+|...- +
T Consensus 157 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---~------------~l-~~~~~~ADIVI~AvG~p~l--i 218 (286)
T PRK14184 157 GKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---P------------DL-AEECREADFLFVAIGRPRF--V 218 (286)
T ss_pred CCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---h------------hH-HHHHHhCCEEEEecCCCCc--C
Confidence 5799999999999999999998721 1123333332211 0 00 1234679999999976432 3
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-+...+.|+.|||.+-++- + + . .+-.|+.+.+..
T Consensus 219 ~~~~vk~GavVIDVGi~~~-~-~-~-l~GDVdf~~v~~ 252 (286)
T PRK14184 219 TADMVKPGAVVVDVGINRT-D-D-G-LVGDCDFEGLSD 252 (286)
T ss_pred CHHHcCCCCEEEEeeeecc-C-C-C-ccCCccHHHHHh
Confidence 3455689999999887652 2 2 1 456677666653
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.31 Score=43.14 Aligned_cols=30 Identities=7% Similarity=0.203 Sum_probs=25.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~---~v~~~ 39 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGA---DVLIV 39 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC---EEEEE
Confidence 5899999999999999999998754 55544
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.16 Score=56.80 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=55.6
Q ss_pred eecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeCCceeEEeecCc-cCCCCCcEEEec
Q 023678 31 VRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTE-DSFDGVDIALFS 108 (279)
Q Consensus 31 ~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a 108 (279)
+.|+.+ .+.+|++|| .|++|..+.+.|...+| ++... .++. .-..+...+ ....+ ++ +...++|+||.|
T Consensus 317 ~~~~~~-~~~~IGfIG-lG~MG~~mA~~L~~~G~---~V~v~-dr~~~~~~~l~~~G--a~~~~-s~~e~~~~aDvVi~~ 387 (1378)
T PLN02858 317 ITMQAK-PVKRIGFIG-LGAMGFGMASHLLKSNF---SVCGY-DVYKPTLVRFENAG--GLAGN-SPAEVAKDVDVLVIM 387 (1378)
T ss_pred hhcccc-CCCeEEEEC-chHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHHcC--CeecC-CHHHHHhcCCEEEEe
Confidence 345432 357899999 89999999999998765 44433 2221 111111111 11111 22 234679999999
Q ss_pred CCCchh-hhhH------HHHHhCCCEEEEcCCC
Q 023678 109 AGGSIS-KKFG------PIAVEKGSIVVDNSSA 134 (279)
Q Consensus 109 ~g~~~s-~~~~------~~~~~aG~~VIDlS~~ 134 (279)
++.... ++.. -.....|..|||.|.-
T Consensus 388 V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STv 420 (1378)
T PLN02858 388 VANEVQAENVLFGDLGAVSALPAGASIVLSSTV 420 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCCCEEEECCCC
Confidence 996543 3332 1123568899999874
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.69 Score=43.49 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=62.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|||.+..||+=|..+|.++ ...+....|+. + ++ .+....+|+|+.|.|.. .-+-
T Consensus 167 Gk~vvVIGRS~iVGkPla~lL~~~---~ATVtvchs~T---~------------nl-~~~~~~ADIvv~AvGk~--~~i~ 225 (299)
T PLN02516 167 GKKAVVVGRSNIVGLPVSLLLLKA---DATVTVVHSRT---P------------DP-ESIVREADIVIAAAGQA--MMIK 225 (299)
T ss_pred CCEEEEECCCccchHHHHHHHHHC---CCEEEEeCCCC---C------------CH-HHHHhhCCEEEEcCCCc--CccC
Confidence 579999999999999999999876 23444443321 0 00 12246789999999874 3444
Q ss_pred HHHHhCCCEEEEcCCCCCCCCC---CceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVEN---VPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~---vplvvPevN~~~i~~ 155 (279)
....+.|+.|||.+-.+..++- ..-++-.++.+.+..
T Consensus 226 ~~~vk~gavVIDvGin~~~~~~~~~g~kl~GDvd~e~v~~ 265 (299)
T PLN02516 226 GDWIKPGAAVIDVGTNAVSDPSKKSGYRLVGDVDFAEVSK 265 (299)
T ss_pred HHHcCCCCEEEEeeccccCcccccCCCceEcCcChHHhhh
Confidence 5677899999998866532210 112455666666553
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.35 Score=46.94 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=51.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.++|+|+| .|.+|+.+.+.|..- ..++.+. ++......... ...... .++ .+.+..+|+|+.++|-+...+.
T Consensus 192 gktVGIvG-~G~IG~~vA~~l~~f---G~~V~~~-dr~~~~~~~~~-~~g~~~~~~l-~ell~~aDvV~l~lPlt~~T~~ 264 (385)
T PRK07574 192 GMTVGIVG-AGRIGLAVLRRLKPF---DVKLHYT-DRHRLPEEVEQ-ELGLTYHVSF-DSLVSVCDVVTIHCPLHPETEH 264 (385)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhC---CCEEEEE-CCCCCchhhHh-hcCceecCCH-HHHhhcCCEEEEcCCCCHHHHH
Confidence 47899999 799999999999764 3355444 33211111100 001111 121 2345789999999985543222
Q ss_pred H-----HHHHhCCCEEEEcCC
Q 023678 118 G-----PIAVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~-----~~~~~aG~~VIDlS~ 133 (279)
. -...+.|+.+|+.+-
T Consensus 265 li~~~~l~~mk~ga~lIN~aR 285 (385)
T PRK07574 265 LFDADVLSRMKRGSYLVNTAR 285 (385)
T ss_pred HhCHHHHhcCCCCcEEEECCC
Confidence 1 122467899997663
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.23 Score=46.91 Aligned_cols=92 Identities=23% Similarity=0.260 Sum_probs=54.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHc-CCCCceEEEEEeecCCC-Cceeee--C-CceeEEeecC--ccCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSA-GKQLSF--Q-DKAYTVEELT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~-~~~p~~~l~~l~s~~s~-G~~~~~--~-~~~~~v~~~d--~~~~~~~DvVf~a~g~ 111 (279)
..+++|+| +|..|+..++.|.. + +..++. +.+|+.. .+.+.. . ...+.+...+ .+.+.++|+|+.|++.
T Consensus 129 ~~~v~iiG-aG~qA~~~~~al~~~~--~i~~v~-V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 129 SSVVAIFG-AGMQARLQLEALTLVR--DIRSAR-IWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPS 204 (326)
T ss_pred CcEEEEEC-CCHHHHHHHHHHHHhC--CccEEE-EECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCC
Confidence 46899999 69999999998864 4 433443 4444321 111110 0 0012232222 2235789999999987
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCC
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
..- -+-...++.|..|.+.+++.
T Consensus 205 ~~p-~i~~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 205 ETP-ILHAEWLEPGQHVTAMGSDA 227 (326)
T ss_pred CCc-EecHHHcCCCcEEEeeCCCC
Confidence 531 22245678999988777653
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.42 Score=42.30 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=25.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+++.|.||+|.+|+++.+.|.++++ +++++
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~---~v~~~ 36 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA---TVVVC 36 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45444
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.23 Score=45.26 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=32.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK 75 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~ 75 (279)
++||.|.|.||+||+.+.+.+.+.++++.+.+...+.
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk 37 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK 37 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc
Confidence 3689999999999999999999998888888877654
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.24 Score=46.36 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=41.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cceeee--C----CceeEEee-cCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSF--Q----DKAYTVEE-LTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~~~~~--~----~~~~~v~~-~d~~~~~~~DvVf~a~g 110 (279)
+||+|+|+ |++|..+...|+.+++- +++++...+.. |+.+.. . .....+.. .+.+++.++|+||.|+|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~--~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag 78 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA--DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAG 78 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC--eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCC
Confidence 68999995 99999999999887542 55555322211 221111 0 01112321 22234688999999998
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 79 ~ 79 (305)
T TIGR01763 79 L 79 (305)
T ss_pred C
Confidence 4
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.71 Score=43.07 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=62.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.+++ ..+....|+. +. + .+....+|+|+.|+|. ..-+-
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~---AtVtichs~T---~n------------l-~~~~~~ADIvI~AvGk--~~~i~ 215 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLERH---ATVTIAHSRT---AD------------L-AGEVGRADILVAAIGK--AELVK 215 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC---CEEEEeCCCC---CC------------H-HHHHhhCCEEEEecCC--cCccC
Confidence 5799999999999999999998762 3333332211 10 0 1223678999999985 33455
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
+...+.|+.|||.+-.+-.+ + -.+-.|+.+..+.
T Consensus 216 ~~~ik~gaiVIDvGin~~~~-g--kl~GDVd~~~v~~ 249 (282)
T PRK14182 216 GAWVKEGAVVIDVGMNRLAD-G--KLVGDVEFAAAAA 249 (282)
T ss_pred HHHcCCCCEEEEeeceecCC-C--CeeCCCCHHHHHh
Confidence 66778999999987665222 1 2566677666553
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.16 Score=52.23 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=25.4
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCC
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFP 65 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p 65 (279)
++++|||.|.||+|++|+.|++.|.++++.
T Consensus 377 ~~~~mkiLVtGa~G~iG~~l~~~L~~~g~~ 406 (668)
T PLN02260 377 GKPSLKFLIYGRTGWIGGLLGKLCEKQGIA 406 (668)
T ss_pred CCCCceEEEECCCchHHHHHHHHHHhCCCe
Confidence 345689999999999999999999887543
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.19 Score=43.65 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=23.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
++++|.|.||+|.+|+.+++.|.++++
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~ 30 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA 30 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 346899999999999999999998854
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.11 Score=47.96 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=48.9
Q ss_pred EECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchh-hhhH--
Q 023678 44 VVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSIS-KKFG-- 118 (279)
Q Consensus 44 IiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s-~~~~-- 118 (279)
||| .|..|..+.+.|.+.+| ++... +++... ..+...+ ....+ +. +...++|+||+|++.... ++..
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G~---~V~v~-dr~~~~~~~l~~~g--~~~~~-s~~~~~~~advVil~vp~~~~~~~v~~g 72 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAGH---PVRVF-DLFPDAVEEAVAAG--AQAAA-SPAEAAEGADRVITMLPAGQHVISVYSG 72 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCCC---eEEEE-eCCHHHHHHHHHcC--CeecC-CHHHHHhcCCEEEEeCCChHHHHHHHcC
Confidence 477 89999999999998765 34433 332210 1111111 11111 12 234689999999998543 4433
Q ss_pred -HH---HHhCCCEEEEcCCCC
Q 023678 119 -PI---AVEKGSIVVDNSSAF 135 (279)
Q Consensus 119 -~~---~~~aG~~VIDlS~~~ 135 (279)
.. ....|..|||.|+-.
T Consensus 73 ~~~l~~~~~~g~~vid~st~~ 93 (288)
T TIGR01692 73 DEGILPKVAKGSLLIDCSTID 93 (288)
T ss_pred cchHhhcCCCCCEEEECCCCC
Confidence 22 235688999998643
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.15 Score=47.84 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRS 68 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~ 68 (279)
.+||.|.||.|+||+.|++.|...+|..+.
T Consensus 27 ~lrI~itGgaGFIgSHLvdkLm~egh~VIa 56 (350)
T KOG1429|consen 27 NLRILITGGAGFIGSHLVDKLMTEGHEVIA 56 (350)
T ss_pred CcEEEEecCcchHHHHHHHHHHhcCCeEEE
Confidence 489999999999999999999887664443
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.38 Score=45.19 Aligned_cols=96 Identities=21% Similarity=0.258 Sum_probs=62.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|||.+..||+=|..+|.+++ ..+....|+. + ++ .+....+|+|+.|.|.. .-+-
T Consensus 158 Gk~vvVIGrS~iVGkPla~lL~~~~---atVtv~hs~T---~------------~l-~~~~~~ADIvIsAvGkp--~~i~ 216 (297)
T PRK14186 158 GKKAVVVGRSILVGKPLALMLLAAN---ATVTIAHSRT---Q------------DL-ASITREADILVAAAGRP--NLIG 216 (297)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC---CEEEEeCCCC---C------------CH-HHHHhhCCEEEEccCCc--CccC
Confidence 5799999999999999999998762 3433332211 0 00 11236789999999864 2344
Q ss_pred HHHHhCCCEEEEcCCCCCCCCC-CceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVEN-VPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~-vplvvPevN~~~i~~ 155 (279)
....+.|+.|||.+-.+--++. .--++-.|+.+.+..
T Consensus 217 ~~~ik~gavVIDvGin~~~~~~~~gkl~GDvd~~~v~~ 254 (297)
T PRK14186 217 AEMVKPGAVVVDVGIHRLPSSDGKTRLCGDVDFEEVEP 254 (297)
T ss_pred HHHcCCCCEEEEeccccccccccCCceeCCccHHHHHh
Confidence 5677899999998766521110 012566677666553
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.32 Score=45.23 Aligned_cols=92 Identities=23% Similarity=0.301 Sum_probs=59.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..+|+-|..+|.+.+ ..+....++. + ++ .+....+|+||.|.|.. .-+-
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~---atVtv~hs~t---~------------~L-~~~~~~ADIvI~Avgk~--~lv~ 210 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNAD---ATVTICHSKT---E------------NL-KAELRQADILVSAAGKA--GFIT 210 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCC---CeeEEEecCh---h------------HH-HHHHhhCCEEEECCCcc--cccC
Confidence 5799999999999999999987652 3333333211 0 11 12346799999999843 2233
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
+...+.|+.|||.+-++- + + -.+-.++.+.++.
T Consensus 211 ~~~vk~GavVIDVgi~~~-~-g--kl~GDvdf~~~~~ 243 (279)
T PRK14178 211 PDMVKPGATVIDVGINQV-N-G--KLCGDVDFDAVKE 243 (279)
T ss_pred HHHcCCCcEEEEeecccc-C-C--CCcCCccHHHHHh
Confidence 445689999999988762 2 1 2345566666553
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.63 Score=43.98 Aligned_cols=89 Identities=17% Similarity=0.286 Sum_probs=54.9
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe---------------ecCCCCceeee--------CCceeEEe----e
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA---------------SKRSAGKQLSF--------QDKAYTVE----E 93 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~---------------s~~s~G~~~~~--------~~~~~~v~----~ 93 (279)
||.|+|+ |-+|.++++.|...|+..+. ++. ..+..|+.-.. ....+.+. +
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~It--IvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~ 77 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIH--IIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHAN 77 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEE--EEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 5899995 99999999999877554333 331 11122321110 01122222 1
Q ss_pred cCc-----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 94 LTE-----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 94 ~d~-----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
++. +-+.+.|+|+.|+..-.++.+..++ ...++.+||..
T Consensus 78 i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~g 122 (312)
T cd01489 78 IKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESG 122 (312)
T ss_pred CCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 221 2257899999999998888877655 67889999853
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.24 Score=45.60 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=25.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+|.|.||||++|+.|++.|.++++ ..+++.+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~-~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRST-QAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCC-CCEEEEEE
Confidence 488999999999999999998753 24566664
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.23 Score=46.55 Aligned_cols=31 Identities=23% Similarity=0.119 Sum_probs=25.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||||++|+.+++.|.++++ +++.+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~---~V~~~ 34 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA---EVYGY 34 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45444
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.19 Score=46.93 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=25.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
++|.|.||||++|+.|++.|.++++ +++.+.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~ 31 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY---EVHGLI 31 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC---EEEEEe
Confidence 3799999999999999999998754 555553
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.12 Score=47.63 Aligned_cols=40 Identities=25% Similarity=0.142 Sum_probs=31.8
Q ss_pred hcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCC
Q 023678 219 LEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVS 266 (279)
Q Consensus 219 ~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~ 266 (279)
..|....+.+-..++..|++|+|++ ||.|+.||++|||+.
T Consensus 182 iSGAG~apgv~~vdildnilp~igg--------ee~k~ewet~kiL~s 221 (361)
T KOG4777|consen 182 ISGAGAAPGVELVDILDNILPGIGG--------EENKFEWETAKILFS 221 (361)
T ss_pred hccCCcCCCchHHHHHHhhcCCCCc--------cchhhhHHHHHhhhc
Confidence 3455444555556789999999999 999999999999964
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.65 Score=43.99 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=53.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cc---eee-------eCC-------ceeEEeecCc-cC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK---QLS-------FQD-------KAYTVEELTE-DS 98 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~---~~~-------~~~-------~~~~v~~~d~-~~ 98 (279)
..||+||| +|.+|+.+...++.+||+ +.++ .++.. .+ .+. ..+ ..+.+.. +. +.
T Consensus 7 i~~VaVIG-aG~MG~giA~~~a~aG~~---V~l~-D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a 80 (321)
T PRK07066 7 IKTFAAIG-SGVIGSGWVARALAHGLD---VVAW-DPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC 80 (321)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCe---EEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH
Confidence 45899999 599999999999988664 3333 22110 00 000 000 0111111 12 23
Q ss_pred CCCCcEEEecCCCchhhh--h---HHHHHhCCCEEEEcCCCCCC
Q 023678 99 FDGVDIALFSAGGSISKK--F---GPIAVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 99 ~~~~DvVf~a~g~~~s~~--~---~~~~~~aG~~VIDlS~~~R~ 137 (279)
+.++|+|+.|.+-....+ + +.+++..++.+-.+||.+..
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~ 124 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLP 124 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCH
Confidence 579999999998765422 2 22344567755567777654
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.76 Score=45.18 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=61.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc------eeeeCCceeEEeecCccCCCCCcEEEecCCCch
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK------QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~------~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
.||+|+| .|..|+.+.+.|.++|+ ++... ..+.... .+...+..+......++.+.+.|+|+...+-..
T Consensus 15 ~~i~v~G-~G~sG~a~a~~L~~~G~---~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~ 89 (458)
T PRK01710 15 KKVAVVG-IGVSNIPLIKFLVKLGA---KVTAF-DKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRI 89 (458)
T ss_pred CeEEEEc-ccHHHHHHHHHHHHCCC---EEEEE-CCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCC
Confidence 5899999 79999999999998754 33333 2221111 111112122221111233567899999866666
Q ss_pred hhhhHHHHHhCCCEEEEcCC-CCCCCCCCceeeccCCH
Q 023678 114 SKKFGPIAVEKGSIVVDNSS-AFRMVENVPLVIPEVNP 150 (279)
Q Consensus 114 s~~~~~~~~~aG~~VIDlS~-~~R~~~~vplvvPevN~ 150 (279)
......++.+.|+.|+.-.- .+|+...-..+|-+=|.
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnG 127 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDG 127 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCC
Confidence 67788888999999984211 12332211245566664
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.45 Score=42.71 Aligned_cols=91 Identities=23% Similarity=0.276 Sum_probs=55.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe---------------ecCCCCcee---------eeCCceeEEe--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA---------------SKRSAGKQL---------SFQDKAYTVE-- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~---------------s~~s~G~~~---------~~~~~~~~v~-- 92 (279)
..||+|+|+ |-+|.++++.|...|...+ .++. ..+..|+.. .....++.+.
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~Gvg~i--~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~ 103 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAAGVGRI--LLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF 103 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEE--EEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 358999995 8899999999998754433 3331 112234310 0011122232
Q ss_pred --ecCcc----CCCCCcEEEecCCCchhhhhHHH-HHhCCCEEEEcC
Q 023678 93 --ELTED----SFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNS 132 (279)
Q Consensus 93 --~~d~~----~~~~~DvVf~a~g~~~s~~~~~~-~~~aG~~VIDlS 132 (279)
.++.+ .++++|+||.|++...++.+..+ +.+.|+++|..+
T Consensus 104 ~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~ 150 (231)
T PRK08328 104 VGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGA 150 (231)
T ss_pred eccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 12211 24689999999998777666654 467899888643
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.25 Score=47.18 Aligned_cols=87 Identities=20% Similarity=0.278 Sum_probs=57.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC--ceEEEEEeecCCCCceeeeCC----ceeEEe-ecCccCC--CCCcEEEec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP--YRSIKMLASKRSAGKQLSFQD----KAYTVE-ELTEDSF--DGVDIALFS 108 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p--~~~l~~l~s~~s~G~~~~~~~----~~~~v~-~~d~~~~--~~~DvVf~a 108 (279)
..+|++|+|+ |.+++.+++.|..- | ...+++++++ +.-+..+|.. .+..+. ..+ +.+ ..+|+|...
T Consensus 5 ~~ir~Gi~g~-g~ia~~f~~al~~~--p~s~~~Ivava~~-s~~~A~~fAq~~~~~~~k~y~syE-eLakd~~vDvVyi~ 79 (351)
T KOG2741|consen 5 ATIRWGIVGA-GRIARDFVRALHTL--PESNHQIVAVADP-SLERAKEFAQRHNIPNPKAYGSYE-ELAKDPEVDVVYIS 79 (351)
T ss_pred ceeEEEEeeh-hHHHHHHHHHhccC--cccCcEEEEEecc-cHHHHHHHHHhcCCCCCccccCHH-HHhcCCCcCEEEeC
Confidence 3589999995 99999999999665 6 7788899876 3333333311 111221 111 111 368999999
Q ss_pred CCCchhhhhHHHHHhCCCEEE
Q 023678 109 AGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 109 ~g~~~s~~~~~~~~~aG~~VI 129 (279)
+++....+++-.+++.|..|.
T Consensus 80 ~~~~qH~evv~l~l~~~K~VL 100 (351)
T KOG2741|consen 80 TPNPQHYEVVMLALNKGKHVL 100 (351)
T ss_pred CCCccHHHHHHHHHHcCCcEE
Confidence 998888888877777776654
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=91.69 E-value=1.1 Score=40.92 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=56.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcC-------CCC-ceEEEEEe----ecCCCCcee----------ee-------CCcee
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDR-------DFP-YRSIKMLA----SKRSAGKQL----------SF-------QDKAY 89 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~-------~~p-~~~l~~l~----s~~s~G~~~----------~~-------~~~~~ 89 (279)
..||+|+|+ |-+|.++++.|++- +|+ ..++.++- +.+..++.+ .. ....+
T Consensus 11 ~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~ 89 (244)
T TIGR03736 11 PVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT 89 (244)
T ss_pred CCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence 479999995 88999999999865 334 22554442 111222111 00 00012
Q ss_pred EEee----cCcc-CCCCCcEEEecCCCchhhhhHHHHHhC----CCEEEEcCC
Q 023678 90 TVEE----LTED-SFDGVDIALFSAGGSISKKFGPIAVEK----GSIVVDNSS 133 (279)
Q Consensus 90 ~v~~----~d~~-~~~~~DvVf~a~g~~~s~~~~~~~~~a----G~~VIDlS~ 133 (279)
.+.. ++.+ .+.++|+|+.|++.-.++.+..+.... ...+||...
T Consensus 90 ~i~a~~~~~~~~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn 142 (244)
T TIGR03736 90 DWTAHPERVERSSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGN 142 (244)
T ss_pred eEEEEEeeeCchhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccC
Confidence 2221 2221 245789999999999999888666544 467888665
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.52 Score=43.95 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=61.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.+++ ..+....++. + ++ .+....+|+|+.|.|...- +-
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~---ATVt~chs~T---~------------dl-~~~~k~ADIvIsAvGkp~~--i~ 216 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNAK---ATVTTCHRFT---T------------DL-KSHTTKADILIVAVGKPNF--IT 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC---CEEEEEcCCC---C------------CH-HHHhhhcCEEEEccCCcCc--CC
Confidence 5799999999999999999998762 3433332211 0 00 1124678999999986532 44
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
....+.|+.|||.+-.+ .+ + -++-.++.+.++.
T Consensus 217 ~~~vk~gavVIDvGin~-~~-g--kl~GDvd~~~v~~ 249 (282)
T PRK14180 217 ADMVKEGAVVIDVGINH-VD-G--KIVGDVDFAAVKD 249 (282)
T ss_pred HHHcCCCcEEEEecccc-cC-C--ceeCCcCHHHHHh
Confidence 56678999999987665 22 2 2556677666653
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.39 Score=46.65 Aligned_cols=87 Identities=17% Similarity=0.305 Sum_probs=50.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCCCCCcEEEecCCCchhhh-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSFDGVDIALFSAGGSISKK- 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s~~- 116 (279)
.++|+|+| .|.+|+.+.+.|..- ..++.+. ++........ ....... .++ .+.+..+|+|++++|.....+
T Consensus 199 gktVGIVG-~G~IG~~vA~~L~af---G~~V~~~-d~~~~~~~~~-~~~g~~~~~~l-~ell~~sDvV~l~lPlt~~T~~ 271 (386)
T PLN03139 199 GKTVGTVG-AGRIGRLLLQRLKPF---NCNLLYH-DRLKMDPELE-KETGAKFEEDL-DAMLPKCDVVVINTPLTEKTRG 271 (386)
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHC---CCEEEEE-CCCCcchhhH-hhcCceecCCH-HHHHhhCCEEEEeCCCCHHHHH
Confidence 57999999 799999999999753 3455444 3321111110 0001111 122 133578999999998543322
Q ss_pred hH----HHHHhCCCEEEEcC
Q 023678 117 FG----PIAVEKGSIVVDNS 132 (279)
Q Consensus 117 ~~----~~~~~aG~~VIDlS 132 (279)
.. -...+.|+.+|+.+
T Consensus 272 li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 272 MFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred HhCHHHHhhCCCCeEEEECC
Confidence 22 12246788999765
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.54 Score=44.57 Aligned_cols=84 Identities=23% Similarity=0.392 Sum_probs=50.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCCCCCcEEEecCCCchh--h
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGSIS--K 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~~s--~ 115 (279)
.++|+||| .|.+|+.+.+.|...++ ++... ++.. .....+ .... ++ .+.+.++|+|++|+|.... .
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~~G~---~V~~~-d~~~-~~~~~~----~~~~~~l-~ell~~aDiVil~lP~t~~t~~ 214 (330)
T PRK12480 146 NMTVAIIG-TGRIGAATAKIYAGFGA---TITAY-DAYP-NKDLDF----LTYKDSV-KEAIKDADIISLHVPANKESYH 214 (330)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC---EEEEE-eCCh-hHhhhh----hhccCCH-HHHHhcCCEEEEeCCCcHHHHH
Confidence 46899999 79999999999986543 45444 3321 111100 1111 11 2345789999999997643 2
Q ss_pred hhHHHH---HhCCCEEEEcCC
Q 023678 116 KFGPIA---VEKGSIVVDNSS 133 (279)
Q Consensus 116 ~~~~~~---~~aG~~VIDlS~ 133 (279)
.+.... .+.|+.+|+.+-
T Consensus 215 li~~~~l~~mk~gavlIN~aR 235 (330)
T PRK12480 215 LFDKAMFDHVKKGAILVNAAR 235 (330)
T ss_pred HHhHHHHhcCCCCcEEEEcCC
Confidence 222222 356888887653
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.35 Score=48.11 Aligned_cols=155 Identities=15% Similarity=0.237 Sum_probs=79.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC---CceeEEe-ecC--ccCCCCCcEEEecCCCc-
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ---DKAYTVE-ELT--EDSFDGVDIALFSAGGS- 112 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~---~~~~~v~-~~d--~~~~~~~DvVf~a~g~~- 112 (279)
+|+||| .|..|+.|.+.|.+++| ++.+. .++.. -+.+... +..+... ++. ...+..+|+||+|++++
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G~---~V~v~-drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~ 75 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHGF---TVSVY-NRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGA 75 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcCC---eEEEE-eCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcH
Confidence 489999 89999999999999876 44444 33211 1111101 1011111 111 11234689999999884
Q ss_pred hhhhhHHHH---HhCCCEEEEcCCCCCCC----------CCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHh
Q 023678 113 ISKKFGPIA---VEKGSIVVDNSSAFRMV----------ENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMA 179 (279)
Q Consensus 113 ~s~~~~~~~---~~aG~~VIDlS~~~R~~----------~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~la 179 (279)
...+....+ ++.|-.|||.+..+--+ .++.|+=-.|..-.-.. + ... .-.+|+..-+ .-.
T Consensus 76 ~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA-~----~G~-~im~GG~~~a-~~~ 148 (467)
T TIGR00873 76 PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGA-R----KGP-SIMPGGSAEA-WPL 148 (467)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHH-h----cCC-cCCCCCCHHH-HHH
Confidence 344444443 45788999998754111 11222222222211000 0 122 2245665544 355
Q ss_pred hhchhhhcCcc--EEEEEEeecccccChhh
Q 023678 180 ATPLHRRAKVT--RMVVSTYQAASGAGAAA 207 (279)
Q Consensus 180 L~PL~~~~~i~--~v~vtt~q~vSGaG~~~ 207 (279)
++|+++...-+ ..-..+|-|-.|+|...
T Consensus 149 ~~p~L~~ia~~~~~~~~~~~~G~~GsG~~v 178 (467)
T TIGR00873 149 VAPIFQKIAAKVDGEPCCTWIGPDGAGHYV 178 (467)
T ss_pred HHHHHHHHhhhcCCCCceEEECCcCHHHHH
Confidence 67877765322 11134577777888443
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.23 Score=42.99 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||||.+|+.+++.|.++++ +++.+
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~---~v~~~ 37 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA---RVALI 37 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC---eEEEE
Confidence 46899999999999999999988754 44444
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.66 Score=40.65 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..++.|.||+|.+|+.+.+.|.++++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~ 31 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA 31 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 46899999999999999999998753
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.54 E-value=1 Score=39.48 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=25.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.+++.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~---~v~~~ 38 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGA---KVIGF 38 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEE
Confidence 346899999999999999999988753 44444
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.45 Score=44.36 Aligned_cols=94 Identities=20% Similarity=0.276 Sum_probs=61.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|.+..||+=|..+|.++ ...+....|+. + ++ .+....+|+|+.|+|...- +
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~---~atVt~chs~T---~------------nl-~~~~~~ADIvIsAvGkp~~--i 214 (282)
T PRK14166 156 EGKDAVIIGASNIVGRPMATMLLNA---GATVSVCHIKT---K------------DL-SLYTRQADLIIVAAGCVNL--L 214 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC---C------------CH-HHHHhhCCEEEEcCCCcCc--c
Confidence 3579999999999999999999875 23433332211 0 00 1123678999999986532 3
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-....+.|+.|||.+-.+ .+++ -++-.|+.+..+.
T Consensus 215 ~~~~vk~GavVIDvGin~-~~~g--kl~GDVd~~~v~~ 249 (282)
T PRK14166 215 RSDMVKEGVIVVDVGINR-LESG--KIVGDVDFEEVSK 249 (282)
T ss_pred CHHHcCCCCEEEEecccc-cCCC--CeeCCCCHHHHHh
Confidence 455678999999987554 2222 2556677666553
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.23 Score=55.56 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=53.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecCc-cCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~ 115 (279)
..||++|| .|..|..+.+.|.+++|+ +... .+ +..+ .+...+ ..+.+ ++ +...++|+||.|++.....
T Consensus 4 ~~~IGfIG-LG~MG~~mA~~L~~~G~~---v~v~-dr-~~~~~~~l~~~G--a~~~~-s~~e~a~~advVi~~l~~~~~v 74 (1378)
T PLN02858 4 AGVVGFVG-LDSLSFELASSLLRSGFK---VQAF-EI-STPLMEKFCELG--GHRCD-SPAEAAKDAAALVVVLSHPDQV 74 (1378)
T ss_pred CCeEEEEc-hhHHHHHHHHHHHHCCCe---EEEE-cC-CHHHHHHHHHcC--CeecC-CHHHHHhcCCEEEEEcCChHHH
Confidence 36899999 899999999999988664 4334 22 2221 111111 11221 22 2345799999999987553
Q ss_pred hhH----HHH---HhCCCEEEEcCCC
Q 023678 116 KFG----PIA---VEKGSIVVDNSSA 134 (279)
Q Consensus 116 ~~~----~~~---~~aG~~VIDlS~~ 134 (279)
+-+ ..+ +..|..|||.|..
T Consensus 75 ~~V~~g~~g~~~~l~~g~iivd~STi 100 (1378)
T PLN02858 75 DDVFFGDEGAAKGLQKGAVILIRSTI 100 (1378)
T ss_pred HHHHhchhhHHhcCCCcCEEEECCCC
Confidence 332 112 2468889999865
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.32 Score=45.51 Aligned_cols=72 Identities=26% Similarity=0.473 Sum_probs=42.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCce-EEEEEeecCCCC--ceeeeCCceeEEeecC-----ccCCCCCcEEEec
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRSAG--KQLSFQDKAYTVEELT-----EDSFDGVDIALFS 108 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~-~l~~l~s~~s~G--~~~~~~~~~~~v~~~d-----~~~~~~~DvVf~a 108 (279)
....||||+||.|-+|+-|--+|... |.+ ++.+..-+...| ..+++......+..+. ...+.++|+|+..
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~n--p~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIP 103 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLN--PLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIP 103 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcC--cccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEec
Confidence 55799999999999999987777654 655 333332222223 2233222223333332 1235789999887
Q ss_pred CC
Q 023678 109 AG 110 (279)
Q Consensus 109 ~g 110 (279)
.|
T Consensus 104 AG 105 (345)
T KOG1494|consen 104 AG 105 (345)
T ss_pred CC
Confidence 65
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.25 Score=47.08 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=24.7
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
+++++|.|.||+|++|+.|++.|.++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~ 78 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY 78 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC
Confidence 4467999999999999999999998764
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.33 Score=42.53 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.||+|.+|+.|++.|.++++ +++.+
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~---~v~~~ 35 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA---RVVVA 35 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC---eEEEe
Confidence 45899999999999999999998754 45444
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.41 Score=42.95 Aligned_cols=30 Identities=13% Similarity=0.420 Sum_probs=24.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+++.|.||+|.+|+.+++.|.++++ +++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~---~V~~~ 31 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY---EVWAT 31 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC---EEEEE
Confidence 5799999999999999999988754 45444
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.53 Score=44.04 Aligned_cols=107 Identities=15% Similarity=0.249 Sum_probs=60.8
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEE--eecCC-----------CCceeee--------CCceeEEe----ecC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML--ASKRS-----------AGKQLSF--------QDKAYTVE----ELT 95 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l--~s~~s-----------~G~~~~~--------~~~~~~v~----~~d 95 (279)
||.|+|+ |-+|.++++.|...|+..+.++=. ...+. .|+.-.. ....+.+. .++
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 5899994 889999999999886654433211 11112 2321110 01122222 121
Q ss_pred ---ccCCCCCcEEEecCCCchhhhhHHHH-HhC--------CCEEEEcCCCCCCCCCCceeeccCC
Q 023678 96 ---EDSFDGVDIALFSAGGSISKKFGPIA-VEK--------GSIVVDNSSAFRMVENVPLVIPEVN 149 (279)
Q Consensus 96 ---~~~~~~~DvVf~a~g~~~s~~~~~~~-~~a--------G~~VIDlS~~~R~~~~vplvvPevN 149 (279)
.+-+.+.|+|+.|++.-.++.+..+. .+. +..+||.+.. -+...+..++|+.-
T Consensus 80 ~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~-G~~G~v~vi~P~~t 144 (291)
T cd01488 80 DKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTE-GFKGHARVILPGIT 144 (291)
T ss_pred chhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEc-ccEEEEEEEcCCCC
Confidence 22357899999999998888887764 333 4678876442 22323445667653
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.26 Score=49.11 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=25.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+|||+|+| .||+|..+.-.|+++++ .+++..+
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~-g~~V~gv 32 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCP-DIEVVVV 32 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCC-CCeEEEE
Confidence 47999999 79999999999998742 3455545
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.49 Score=40.32 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=20.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDR 62 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~ 62 (279)
|++.|.||+|.+|+++.+.|.++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~ 23 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR 23 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc
Confidence 47999999999999999999875
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.81 Score=43.74 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=47.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchh----
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS---- 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s---- 114 (279)
..+|.|||| |-+|+..++.|.+++. .++ .++.|... ...+.+. .... ..-+..+|+||+|++.+.+
T Consensus 174 ~k~vLvIGa-Gem~~l~a~~L~~~g~--~~i-~v~nRt~~--~~~~~~~--~~~~--~~~~~~~DvVIs~t~~Tas~~p~ 243 (338)
T PRK00676 174 KASLLFIGY-SEINRKVAYYLQRQGY--SRI-TFCSRQQL--TLPYRTV--VREE--LSFQDPYDVIFFGSSESAYAFPH 243 (338)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHcCC--CEE-EEEcCCcc--ccchhhh--hhhh--hhcccCCCEEEEcCCcCCCCCce
Confidence 479999995 9999999999998843 333 34444331 1111110 0000 0113578999998542222
Q ss_pred --hhhHHHHHhCCCEEEEcCCCC
Q 023678 115 --KKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 115 --~~~~~~~~~aG~~VIDlS~~~ 135 (279)
.+..... ..-.+||++=+-
T Consensus 244 i~~~~~~~~--~~r~~iDLAvPR 264 (338)
T PRK00676 244 LSWESLADI--PDRIVFDFNVPR 264 (338)
T ss_pred eeHHHHhhc--cCcEEEEecCCC
Confidence 2222221 113689998763
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.4 Score=42.68 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..++.|.||+|.+|+++.+.|.++++
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~ 34 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGA 34 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 45899999999999999999998754
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.55 Score=44.10 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=50.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh-h
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK-F 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~-~ 117 (279)
..+|+|+| .|.+|+++.++|..- ..++..+ +++... . +......++ .+.+..+|+|++++|.+...+ .
T Consensus 122 gktvgIiG-~G~IG~~vA~~l~af---G~~V~~~-~r~~~~----~-~~~~~~~~l-~ell~~aDiv~~~lp~t~~T~~l 190 (303)
T PRK06436 122 NKSLGILG-YGGIGRRVALLAKAF---GMNIYAY-TRSYVN----D-GISSIYMEP-EDIMKKSDFVLISLPLTDETRGM 190 (303)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHC---CCEEEEE-CCCCcc----c-CcccccCCH-HHHHhhCCEEEECCCCCchhhcC
Confidence 47999999 899999999988643 3355554 332111 0 100001121 123568999999998654322 2
Q ss_pred H----HHHHhCCCEEEEcCC
Q 023678 118 G----PIAVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~----~~~~~aG~~VIDlS~ 133 (279)
. -...+.|+.+|+.|-
T Consensus 191 i~~~~l~~mk~ga~lIN~sR 210 (303)
T PRK06436 191 INSKMLSLFRKGLAIINVAR 210 (303)
T ss_pred cCHHHHhcCCCCeEEEECCC
Confidence 1 122467889997764
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.75 Score=39.67 Aligned_cols=83 Identities=14% Similarity=0.215 Sum_probs=48.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee--eC-CceeEEe--ecC-c-----------cCCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS--FQ-DKAYTVE--ELT-E-----------DSFDG 101 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~--~~-~~~~~v~--~~d-~-----------~~~~~ 101 (279)
|++.|.|+||++|. +.+.|.++++ ++..+ +++... ..+. .. ...+... |+. . ..+..
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~---~V~v~-~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~ 75 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGF---HVSVI-ARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGP 75 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcC---EEEEE-ECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 47999999999876 8988988744 44444 343211 1110 00 1112211 221 0 11346
Q ss_pred CcEEEecCCCchhhhhHHHHHhCCCE
Q 023678 102 VDIALFSAGGSISKKFGPIAVEKGSI 127 (279)
Q Consensus 102 ~DvVf~a~g~~~s~~~~~~~~~aG~~ 127 (279)
.|++|...-....+.++..+.+.|..
T Consensus 76 id~lv~~vh~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 76 FDLAVAWIHSSAKDALSVVCRELDGS 101 (177)
T ss_pred CeEEEEeccccchhhHHHHHHHHccC
Confidence 78999888777777777777777765
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.45 Score=44.61 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=62.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCceeeeCCceeEEeecC-ccCCCCCcEEEecCCCchhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~ 115 (279)
+..+|.|+|.+..||+=|..+|.++. .....+....+.. .+ .+....+|+|+.|+|.. .
T Consensus 158 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-----------------~~l~~~~~~ADIvI~Avg~~--~ 218 (295)
T PRK14174 158 KGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-----------------KDIPSYTRQADILIAAIGKA--R 218 (295)
T ss_pred CCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-----------------hhHHHHHHhCCEEEEecCcc--C
Confidence 35799999999999999999987620 0012222221110 01 12346899999999765 3
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCC---CCceeeccCCHHhhhc
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVE---NVPLVIPEVNPEAMSG 155 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~---~vplvvPevN~~~i~~ 155 (279)
-+-+...+.|+.|||.+-++-.++ ...-.+-.|+.+..+.
T Consensus 219 li~~~~vk~GavVIDVgi~~~~~~~~~~g~kl~GDVd~~~v~~ 261 (295)
T PRK14174 219 FITADMVKPGAVVIDVGINRIEDPSTKSGYRLVGDVDYEGVSA 261 (295)
T ss_pred ccCHHHcCCCCEEEEeeccccccccccCCCceECCcCHHHHHh
Confidence 355566789999999987762121 0113566677666653
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.35 Score=43.21 Aligned_cols=31 Identities=10% Similarity=0.206 Sum_probs=25.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~---~Vi~~ 40 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA---DVLIA 40 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998743 55555
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.58 Score=43.69 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=60.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.++ ...+....|+. + ++ .+....+|+|+.|+|...- +-
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~---~atVtichs~T---~------------~l-~~~~~~ADIvI~AvG~~~~--i~ 215 (284)
T PRK14170 157 GKRAVVIGRSNIVGKPVAQLLLNE---NATVTIAHSRT---K------------DL-PQVAKEADILVVATGLAKF--VK 215 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC---C------------CH-HHHHhhCCEEEEecCCcCc--cC
Confidence 579999999999999999999876 23433333211 0 00 1224678999999986532 34
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
....+.|+.|||.+-.+ .+++ -++-.++.+...
T Consensus 216 ~~~vk~GavVIDvGin~-~~~g--kl~GDvdfe~~~ 248 (284)
T PRK14170 216 KDYIKPGAIVIDVGMDR-DENN--KLCGDVDFDDVV 248 (284)
T ss_pred HHHcCCCCEEEEccCcc-cCCC--CeecccchHHHH
Confidence 56678999999988765 2222 245667766554
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.46 Score=42.52 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=26.9
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|+..++.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~---~V~~~ 37 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA---AVMIV 37 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEE
Confidence 4457899999999999999999998754 45444
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.46 Score=45.79 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=58.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCce---eee----CC-----ceeEEeecC-ccC----CC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQ---LSF----QD-----KAYTVEELT-EDS----FD 100 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~~---~~~----~~-----~~~~v~~~d-~~~----~~ 100 (279)
.+.+.|.||||++|.-+++.+.... ++...+ +++.| +..+. +.. .+ ..+.+.|.+ ++. ..
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sl-avAGR-n~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak 82 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSL-AVAGR-NEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAK 82 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceE-EEecC-CHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHh
Confidence 3789999999999999999987632 344443 33343 22221 100 11 113333432 222 35
Q ss_pred CCcEEEecCCCch--hhhhHHHHHhCCCEEEEcCCC
Q 023678 101 GVDIALFSAGGSI--SKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 101 ~~DvVf~a~g~~~--s~~~~~~~~~aG~~VIDlS~~ 134 (279)
.+-+++-|+|... ....+..+.+.|+.-||.|+.
T Consensus 83 ~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGE 118 (423)
T KOG2733|consen 83 QARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGE 118 (423)
T ss_pred hhEEEEeccccceecCcHHHHHHHHcCCceeccCCC
Confidence 7899999998753 245666678899988899884
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.84 Score=44.93 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=53.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-c----eeeeCCceeEEeecCccCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-K----QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~----~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
..+|.|+|+ |.+|.++.+.|.++++ ++..+..+.... . .+...+..+.... ......++|+|+.+.|..-
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~G~---~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLELGA---RVTVVDDGDDERHRALAAILEALGATVRLGP-GPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCchhhhHHHHHHHHHcCCEEEECC-CccccCCCCEEEECCCcCC
Confidence 358999995 9999999999988754 444442221111 1 1111121221111 1122346899999998877
Q ss_pred hhhhHHHHHhCCCEEE
Q 023678 114 SKKFGPIAVEKGSIVV 129 (279)
Q Consensus 114 s~~~~~~~~~aG~~VI 129 (279)
....+..+.+.|+.|+
T Consensus 91 ~~~~~~~a~~~gi~v~ 106 (480)
T PRK01438 91 DAPLLAAAADAGIPVW 106 (480)
T ss_pred CCHHHHHHHHCCCeec
Confidence 7777888889999987
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.38 Score=41.84 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=22.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.+++.|.||+|.+|+.+.+.|.++++
T Consensus 5 ~k~~lVtGas~~iG~~ia~~l~~~G~ 30 (235)
T PRK06550 5 TKTVLITGAASGIGLAQARAFLAQGA 30 (235)
T ss_pred CCEEEEcCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998754
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.32 Score=44.85 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.++|.|.||+|++|+.|++.|.++++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~ 30 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY 30 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC
Confidence 46899999999999999999998754
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.46 Score=47.35 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=47.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecC-ccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~ 116 (279)
.++++|+|+ |-+|+.+...|.+.++ ++... +|+.. .+.+.... .......+ ...+.++|+|+.|+|.+..-
T Consensus 332 ~k~vlIiGa-GgiG~aia~~L~~~G~---~V~i~-~R~~~~~~~la~~~-~~~~~~~~~~~~l~~~DiVInatP~g~~~- 404 (477)
T PRK09310 332 NQHVAIVGA-GGAAKAIATTLARAGA---ELLIF-NRTKAHAEALASRC-QGKAFPLESLPELHRIDIIINCLPPSVTI- 404 (477)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHHHh-ccceechhHhcccCCCCEEEEcCCCCCcc-
Confidence 468999995 8999999999988743 54443 33211 11111000 00111111 12356789999999987532
Q ss_pred hHHHHHhCCCEEEEcCC
Q 023678 117 FGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~ 133 (279)
.. ... ..|+|+.-
T Consensus 405 -~~-~l~--~~v~D~~Y 417 (477)
T PRK09310 405 -PK-AFP--PCVVDINT 417 (477)
T ss_pred -hh-HHh--hhEEeccC
Confidence 12 222 26788754
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.98 E-value=1.3 Score=41.48 Aligned_cols=95 Identities=19% Similarity=0.241 Sum_probs=60.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.++ ...+....|+. + ++ .+....+|+|+.|.|...- +-
T Consensus 160 Gk~vvViGrS~iVGkPla~lL~~~---~aTVt~chs~T---~------------~l-~~~~~~ADIvVsAvGkp~~--i~ 218 (294)
T PRK14187 160 GSDAVVIGRSNIVGKPMACLLLGE---NCTVTTVHSAT---R------------DL-ADYCSKADILVAAVGIPNF--VK 218 (294)
T ss_pred CCEEEEECCCccchHHHHHHHhhC---CCEEEEeCCCC---C------------CH-HHHHhhCCEEEEccCCcCc--cC
Confidence 579999999999999999999876 23433333211 0 00 1224679999999986532 33
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCC-ceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENV-PLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~v-plvvPevN~~~i~~ 155 (279)
....+.|+.|||..-.+ .+++. .-++-.++.+.+..
T Consensus 219 ~~~ik~gaiVIDVGin~-~~~~~~~kl~GDvd~e~v~~ 255 (294)
T PRK14187 219 YSWIKKGAIVIDVGINS-IEEGGVKKFVGDVDFAEVKK 255 (294)
T ss_pred HHHcCCCCEEEEecccc-cCCCCccceeCCccHHHHhh
Confidence 45567899999986554 22220 02456667665553
|
|
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.36 Score=51.29 Aligned_cols=90 Identities=17% Similarity=0.093 Sum_probs=54.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCC------CCceEEEEEeecCCCCceeeeCCcee---------EEeecCcc----C
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRD------FPYRSIKMLASKRSAGKQLSFQDKAY---------TVEELTED----S 98 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~------~p~~~l~~l~s~~s~G~~~~~~~~~~---------~v~~~d~~----~ 98 (279)
+.++|+|+| .|-||+.++++|.++. .-.++++.+..++. ..+...+-+. ...+.+.+ .
T Consensus 464 ~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (819)
T PRK09436 464 QVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRK--MLLDEHGIDLDNWREELAEAGEPFDLDRLIRL 540 (819)
T ss_pred ccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCc--cccCCCCCCHHHHHHHHhhccCCCCHHHHHHH
Confidence 468999999 8999999999986541 01345555543221 1111111000 00111110 0
Q ss_pred CC----CCcEEEecCCCchhhhhHHHHHhCCCEEEE
Q 023678 99 FD----GVDIALFSAGGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 99 ~~----~~DvVf~a~g~~~s~~~~~~~~~aG~~VID 130 (279)
.. ..|+++.|++......+..+++++|+.||-
T Consensus 541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVt 576 (819)
T PRK09436 541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVT 576 (819)
T ss_pred HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEc
Confidence 11 359999999987666667799999999993
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.64 Score=43.43 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=58.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+-|..+|.+++ ..+....++. + ++ .+....+|++|.|.|... -+-
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~---atVtv~hs~T---~------------~l-~~~~~~ADIvi~avG~p~--~v~ 217 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAG---CTVTVCHRFT---K------------NL-RHHVRNADLLVVAVGKPG--FIP 217 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCC---CeEEEEECCC---C------------CH-HHHHhhCCEEEEcCCCcc--ccc
Confidence 5799999999999999999998753 3443343221 0 11 123467899999996543 234
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
....+.|+.|||.+-.+ .+++ -.+-.++.+..+
T Consensus 218 ~~~vk~gavVIDvGin~-~~~g--k~~GDvd~~~~~ 250 (285)
T PRK10792 218 GEWIKPGAIVIDVGINR-LEDG--KLVGDVEFETAA 250 (285)
T ss_pred HHHcCCCcEEEEccccc-ccCC--CcCCCcCHHHHH
Confidence 46678999999987544 2111 133456655554
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.47 Score=44.39 Aligned_cols=92 Identities=23% Similarity=0.318 Sum_probs=59.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.+++ ..+....|+. +.+ .+....+|+|+.|.|.. .-+-
T Consensus 159 GK~vvViGrS~iVGkPla~lL~~~~---ATVtichs~T---~~L-------------~~~~~~ADIvV~AvGkp--~~i~ 217 (288)
T PRK14171 159 GKNVVIIGRSNIVGKPLSALLLKEN---CSVTICHSKT---HNL-------------SSITSKADIVVAAIGSP--LKLT 217 (288)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC---CEEEEeCCCC---CCH-------------HHHHhhCCEEEEccCCC--CccC
Confidence 5799999999999999999998762 3433332211 100 11236789999999854 3344
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
....+.|+.|||.+-.+ .+++ . .+-.|+.+..+
T Consensus 218 ~~~vk~GavVIDvGin~-~~~g-k-l~GDVd~~~v~ 250 (288)
T PRK14171 218 AEYFNPESIVIDVGINR-ISGN-K-IIGDVDFENVK 250 (288)
T ss_pred HHHcCCCCEEEEeeccc-cCCC-C-eECCccHHHHH
Confidence 56678999999987543 2221 1 34556656555
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.95 Score=42.50 Aligned_cols=79 Identities=14% Similarity=0.253 Sum_probs=49.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC------CCceeeeCCc--eeEE-eecCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQLSFQDK--AYTV-EELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s------~G~~~~~~~~--~~~v-~~~d~~~~~~~DvVf~a~g 110 (279)
|||+|+| +|.+|.-+.-.|.+.+ . .+..+...+. .|-.+..... .... ...+.+.+..+|+||.++-
T Consensus 1 mkI~IlG-aGAvG~l~g~~L~~~g-~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILG-AGAIGSLLGARLAKAG-H--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CeEEEEC-CcHHHHHHHHHHHhCC-C--eEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence 6899999 6999999999999874 2 3333432221 2333332211 1111 1122344568999999999
Q ss_pred CchhhhhHHHHH
Q 023678 111 GSISKKFGPIAV 122 (279)
Q Consensus 111 ~~~s~~~~~~~~ 122 (279)
+....+.++.+.
T Consensus 77 a~q~~~al~~l~ 88 (307)
T COG1893 77 AYQLEEALPSLA 88 (307)
T ss_pred cccHHHHHHHhh
Confidence 888877776664
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.24 Score=46.15 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=26.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.++|.|.||||++|++|++.|.++++ +++.+.
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~---~V~~~~ 37 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGY---EVHGII 37 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC---EEEEEe
Confidence 46899999999999999999998753 555553
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.66 Score=41.48 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=26.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+..+|.|.||+|.+|+++.+.|.++ ...+++++.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~--gg~~V~~~~ 40 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKN--APARVVLAA 40 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhc--CCCeEEEEe
Confidence 3468999999999999999999887 334555553
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.73 E-value=1.3 Score=44.69 Aligned_cols=204 Identities=11% Similarity=0.141 Sum_probs=97.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCCCCCcEEEecCCCchh-hh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGSIS-KK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~~s-~~ 116 (279)
..+|+|+| .|.+|+.+.+.|..-+ .++.++ ++.......... ..... ++ .+.+..+|+|++++|-+.. +.
T Consensus 138 gktvgIiG-~G~IG~~vA~~l~~fG---~~V~~~-d~~~~~~~~~~~--g~~~~~~l-~ell~~aDvV~l~lPlt~~T~~ 209 (525)
T TIGR01327 138 GKTLGVIG-LGRIGSIVAKRAKAFG---MKVLAY-DPYISPERAEQL--GVELVDDL-DELLARADFITVHTPLTPETRG 209 (525)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCC---CEEEEE-CCCCChhHHHhc--CCEEcCCH-HHHHhhCCEEEEccCCChhhcc
Confidence 47899999 8999999999997543 355544 322111110000 11111 11 2335789999999996532 22
Q ss_pred hH--HH--HHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc-cccCCCCCcEEECCCChHHHHH-HhhhchhhhcCcc
Q 023678 117 FG--PI--AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG-IKVGMGKGALIANPNCSTIICL-MAATPLHRRAKVT 190 (279)
Q Consensus 117 ~~--~~--~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~-~~~~~~~~~iVanPgC~tt~l~-laL~PL~~~~~i~ 190 (279)
+. .. ..+.|+.+|+.+-.-- |+.+++.. ++. .. |+..+-=+.--= +.-.||.+ ..
T Consensus 210 li~~~~l~~mk~ga~lIN~aRG~~-----------vde~aL~~aL~~----g~-i~gAaLDVf~~EP~~~~pL~~---~~ 270 (525)
T TIGR01327 210 LIGAEELAKMKKGVIIVNCARGGI-----------IDEAALYEALEE----GH-VRAAALDVFEKEPPTDNPLFD---LD 270 (525)
T ss_pred CcCHHHHhcCCCCeEEEEcCCCce-----------eCHHHHHHHHHc----CC-eeEEEEecCCCCCCCCChhhc---CC
Confidence 22 12 2467889997764321 23333321 211 11 111100000000 00135543 34
Q ss_pred EEEEEEeec-ccccC-hhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCC
Q 023678 191 RMVVSTYQA-ASGAG-AAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFK 268 (279)
Q Consensus 191 ~v~vtt~q~-vSGaG-~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~ 268 (279)
.|++|-=.| .|--. ........+++..+++|+++...+-...+..+..+.++. |.+-=.|+-+=.+++++...
T Consensus 271 nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~~~~~~~~-----~~~la~riG~~a~ql~~~~~ 345 (525)
T TIGR01327 271 NVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDADVMEKLKP-----YLDLAEKLGKLAGQLLDGAV 345 (525)
T ss_pred CeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCCCCchhhhhhhh-----HHHHHHHHHHHHHHHcCCCc
Confidence 555543222 12111 223455677788888887653322111122233333332 22233466666788888765
Q ss_pred ccEEee
Q 023678 269 MNFFVS 274 (279)
Q Consensus 269 ~~v~~~ 274 (279)
-+|.++
T Consensus 346 ~~v~i~ 351 (525)
T TIGR01327 346 QSVEVT 351 (525)
T ss_pred eEEEEE
Confidence 565554
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.65 Score=41.48 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=23.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.+++.|.||+|.+|+++.+.|.++|+
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~ 31 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS 31 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998754
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.87 Score=40.74 Aligned_cols=84 Identities=15% Similarity=0.264 Sum_probs=48.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce-eee-CCceeEEee-cCc-----cCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSF-QDKAYTVEE-LTE-----DSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~-~~~-~~~~~~v~~-~d~-----~~~~~~DvVf~a~g~ 111 (279)
|++.|+|+ |.+|+.+.+.|.+.+|. ++++-..+..-.. ... ........+ .+. .-+.++|+++.+++.
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~---Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHN---VVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCc---eEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 68999995 99999999999987653 4445322111011 110 011111112 221 124689999999999
Q ss_pred chhhhhHHHHH-h-CCCE
Q 023678 112 SISKKFGPIAV-E-KGSI 127 (279)
Q Consensus 112 ~~s~~~~~~~~-~-aG~~ 127 (279)
+...-.+-.++ + .|.+
T Consensus 77 d~~N~i~~~la~~~~gv~ 94 (225)
T COG0569 77 DEVNSVLALLALKEFGVP 94 (225)
T ss_pred CHHHHHHHHHHHHhcCCC
Confidence 76655554443 3 4663
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.31 Score=42.52 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.+++.|.||+|.+|+.+.+.|.++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA 31 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998854
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.38 Score=44.19 Aligned_cols=31 Identities=10% Similarity=0.307 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~---~Vi~~ 70 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA---TVVAV 70 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 55444
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.77 Score=43.03 Aligned_cols=98 Identities=16% Similarity=0.267 Sum_probs=62.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..+|.|+|.+..||+=|..+|.+++.. ...+....|+. + ++ .+....+|+|+.|+|...- +
T Consensus 157 GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---~------------nl-~~~~~~ADIvIsAvGkp~~--i 218 (293)
T PRK14185 157 GKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---K------------NL-KKECLEADIIIAALGQPEF--V 218 (293)
T ss_pred CCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---C------------CH-HHHHhhCCEEEEccCCcCc--c
Confidence 579999999999999999999876311 22333332211 0 00 1123678999999986532 3
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCC----CceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~----vplvvPevN~~~i~~ 155 (279)
-....+.|+.|||.+-.+ .++. ..-.+-.|+.+.++.
T Consensus 219 ~~~~vk~gavVIDvGin~-~~~~~~~~g~klvGDVdf~~v~~ 259 (293)
T PRK14185 219 KADMVKEGAVVIDVGTTR-VPDATRKSGFKLTGDVKFDEVAP 259 (293)
T ss_pred CHHHcCCCCEEEEecCcc-cccccccCCCeeEcCCCHHHHHh
Confidence 345678999999987654 2220 113566777666653
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.64 Score=44.30 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=54.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC----------------CC--ceee--------eCCceeEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS----------------AG--KQLS--------FQDKAYTVE 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s----------------~G--~~~~--------~~~~~~~v~ 92 (279)
..+|.|+|+ |-+|..+++.|...|+. ++.++ .+.. .| ++-. .....+.+.
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGvg--~i~lv-D~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGIG--KLTIA-DRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC--EEEEE-cCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 468999995 88999999999988543 33333 2211 11 1000 001122222
Q ss_pred ----ecCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 93 ----ELTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 93 ----~~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
+++. +.+.++|+||.|++...++.+...+ .+.|+++|..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 2221 2247899999999998887766554 56788888543
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.84 Score=42.60 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=53.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
...+|.|+|.+..||+=|..+|.+++ ..+....|+. + ++ .+....+|+|+.|.|...- +
T Consensus 158 ~Gk~vvViGrS~iVGkPla~lL~~~~---atVt~chs~T---~------------~l-~~~~~~ADIvIsAvGk~~~--i 216 (284)
T PRK14177 158 TGKNAVVVGRSPILGKPMAMLLTEMN---ATVTLCHSKT---Q------------NL-PSIVRQADIIVGAVGKPEF--I 216 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC---CEEEEeCCCC---C------------CH-HHHHhhCCEEEEeCCCcCc--c
Confidence 35799999999999999999998762 3433332211 1 00 1124678999999986532 3
Q ss_pred HHHHHhCCCEEEEcCCCCC
Q 023678 118 GPIAVEKGSIVVDNSSAFR 136 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R 136 (279)
-....+.|+.|||.+-.+.
T Consensus 217 ~~~~ik~gavVIDvGin~~ 235 (284)
T PRK14177 217 KADWISEGAVLLDAGYNPG 235 (284)
T ss_pred CHHHcCCCCEEEEecCccc
Confidence 4556789999999887663
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=90.36 E-value=1.7 Score=43.04 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=62.6
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCC---CceEEEEEee----cC-----------CCCceeee--------CCceeEEee-
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDF---PYRSIKMLAS----KR-----------SAGKQLSF--------QDKAYTVEE- 93 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~---p~~~l~~l~s----~~-----------s~G~~~~~--------~~~~~~v~~- 93 (279)
||.||| .|-+|.++++.|...|. +..++.++-. .+ ..|+.-+. ....+.+..
T Consensus 1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 589999 59999999999988765 1134444421 11 12221110 011222221
Q ss_pred ---cC--------ccCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcCCCCCCCCCCceeeccC
Q 023678 94 ---LT--------EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMVENVPLVIPEV 148 (279)
Q Consensus 94 ---~d--------~~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS~~~R~~~~vplvvPev 148 (279)
++ .+-+.+.|+|+.|++.-.++.++.+. ...|...|+.. ...+.-.+..++|.+
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~g-t~G~~G~v~v~iP~~ 145 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESG-TLGTKGNTQVVIPHL 145 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe-cccceeEEEEEeCCC
Confidence 11 11246899999999998888777655 57888888743 344444455566654
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.81 Score=42.79 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=58.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+-|..+|.+++ ..+....++. + ++ .+....+|+||.|.|... -+-
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~---atVtv~hs~T---~------------~l-~~~~~~ADIvv~AvG~p~--~i~ 222 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRN---ATVSVCHVFT---D------------DL-KKYTLDADILVVATGVKH--LIK 222 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCC---CEEEEEeccC---C------------CH-HHHHhhCCEEEEccCCcc--ccC
Confidence 5799999999999999999998763 3433332211 0 10 122367899999987642 233
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
....+.|+.|||.+..+ .+ + . ++-.++.+..+
T Consensus 223 ~~~vk~gavVIDvGin~-~~-g-k-l~GDvd~~~~~ 254 (287)
T PRK14176 223 ADMVKEGAVIFDVGITK-EE-D-K-VYGDVDFENVI 254 (287)
T ss_pred HHHcCCCcEEEEecccc-cC-C-C-ccCCcCHHHHH
Confidence 45678899999998764 21 1 1 33456655554
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.83 Score=40.81 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s 74 (279)
+.++|+|.| .|.||+.+.+.|.+.+ .+++.++.
T Consensus 22 ~g~~vaIqG-fGnVG~~~a~~L~~~G---~~vV~vsD 54 (217)
T cd05211 22 EGLTVAVQG-LGNVGWGLAKKLAEEG---GKVLAVSD 54 (217)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcC---CEEEEEEc
Confidence 458999999 8999999999999863 45566643
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.85 Score=43.03 Aligned_cols=105 Identities=11% Similarity=0.181 Sum_probs=61.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee----CCceeEEeecC--ccCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF----QDKAYTVEELT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~----~~~~~~v~~~d--~~~~~~~DvVf~a~g~ 111 (279)
+..+++|+| +|..++.-++.+..- +|.-++ .+.+|+.. +.-.+ ....+.+...+ .+...++|+|++||++
T Consensus 127 d~~~l~iiG-~G~qA~~~~~a~~~v-~~i~~v-~v~~r~~~-~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s 202 (315)
T PRK06823 127 HVSAIGIVG-TGIQARMQLMYLKNV-TDCRQL-WVWGRSET-ALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS 202 (315)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhc-CCCCEE-EEECCCHH-HHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC
Confidence 346899999 799999999887653 354444 44454321 11111 10112232222 2345789999999986
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
..- -+-.+.++.|..|+-.+++.. ..-|+.++-++
T Consensus 203 ~~P-~~~~~~l~~G~hi~~iGs~~p-------~~~Eld~~~l~ 237 (315)
T PRK06823 203 REP-LLQAEDIQPGTHITAVGADSP-------GKQELDAELVA 237 (315)
T ss_pred CCc-eeCHHHcCCCcEEEecCCCCc-------ccccCCHHHHh
Confidence 632 222456789999876665432 13466666665
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.36 Score=42.40 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|+++.|.||||.+|+.+.+.|.++++ +++.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~---~v~~~ 31 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI---AVLGV 31 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC---EEEEE
Confidence 46899999999999999999998754 44444
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.73 Score=41.90 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=41.5
Q ss_pred EEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCC--CCceeee-----CCceeEEeec-C-ccCCCCCcEEEecCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRS--AGKQLSF-----QDKAYTVEEL-T-EDSFDGVDIALFSAGG 111 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s--~G~~~~~-----~~~~~~v~~~-d-~~~~~~~DvVf~a~g~ 111 (279)
|+|+||.|.+|..++..|...+ +...++.++...+. .+..... ......+... | .+++.++|+|+++.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 6899998999999999988763 12356666643221 1110000 0012233322 2 3567899999998764
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.37 Score=51.16 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=54.3
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC-------CCceEEEEEeecCCC-Cce--eeeCC-c-ee--EEeecCc----cC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSA-GKQ--LSFQD-K-AY--TVEELTE----DS 98 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~-------~p~~~l~~l~s~~s~-G~~--~~~~~-~-~~--~v~~~d~----~~ 98 (279)
++.++|+|+| .|-||+.++++|.++. .-.++++.++.++.. -.+ +.... . .. ...+.+. +.
T Consensus 456 ~~~i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~ 534 (810)
T PRK09466 456 EKRIGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLW 534 (810)
T ss_pred CceEEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHH
Confidence 3568999999 8999999999986541 123566666544321 010 00000 0 00 0000111 01
Q ss_pred CC----CCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 99 FD----GVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 99 ~~----~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
+. +.++++.|++......+...++++|+.||
T Consensus 535 i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VV 569 (810)
T PRK09466 535 LRAHPYDELVVLDVTASEQLALQYPDFASHGFHVI 569 (810)
T ss_pred HhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEE
Confidence 11 24699999998766666779999999999
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.72 Score=42.94 Aligned_cols=93 Identities=22% Similarity=0.343 Sum_probs=60.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|.+..||+=|..+|.+++ ..+....|+ . +.+ .+....+|+|+.|.|...- +
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~---AtVt~chs~-T--~~l-------------~~~~~~ADIvIsAvGkp~~--i 215 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNEN---ATVTICHSK-T--KNL-------------KEVCKKADILVVAIGRPKF--I 215 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC---CEEEEeCCC-C--CCH-------------HHHHhhCCEEEEcCCCcCc--c
Confidence 35799999999999999999998762 343333221 1 100 1123578999999986532 4
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-+...+.|+.|||..-.+ .+ + -++-.++.+.+..
T Consensus 216 ~~~~ik~gavVIDvGin~-~~-g--kl~GDvd~~~v~~ 249 (278)
T PRK14172 216 DEEYVKEGAIVIDVGTSS-VN-G--KITGDVNFDKVID 249 (278)
T ss_pred CHHHcCCCcEEEEeeccc-cC-C--ceeeeccHHHHHh
Confidence 455678999999986554 22 2 2455677666553
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.37 Score=45.05 Aligned_cols=90 Identities=12% Similarity=0.265 Sum_probs=53.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--------Cceeee-CCc----eeEEeecCc-cCC-CCCcE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------GKQLSF-QDK----AYTVEELTE-DSF-DGVDI 104 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--------G~~~~~-~~~----~~~v~~~d~-~~~-~~~Dv 104 (279)
|||+|+|| |.+|..+...|.+.+++ +.++ +|+.. +....+ .+. .+.+.. +. +.. .++|+
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~~---V~l~-~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~Dl 74 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKIS---VNLW-GRNHTTFESINTKRKNLKYLPTCHLPDNISVKS-AIDEVLSDNATC 74 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCe---EEEE-ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeC-CHHHHHhCCCCE
Confidence 47999995 99999999999887543 3333 44321 111110 010 111211 11 223 47899
Q ss_pred EEecCCCchhhhhHHHHHh----CCCEEEEcCCCC
Q 023678 105 ALFSAGGSISKKFGPIAVE----KGSIVVDNSSAF 135 (279)
Q Consensus 105 Vf~a~g~~~s~~~~~~~~~----aG~~VIDlS~~~ 135 (279)
+|+|+++....+.++++.. ....||-+..-+
T Consensus 75 iiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 75 IILAVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred EEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 9999999888887776654 344555455444
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.59 Score=41.47 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=25.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.+|.|.||+|.+|+++++.|.++++ +++.+.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~---~Vi~~~ 32 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA---QLVLAA 32 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC---EEEEEe
Confidence 4799999999999999999988743 555553
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.92 E-value=2 Score=42.60 Aligned_cols=87 Identities=20% Similarity=0.205 Sum_probs=55.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC------------------C--cee----EEee
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ------------------D--KAY----TVEE 93 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~------------------~--~~~----~v~~ 93 (279)
+..+|+|.| .|.||...++.|.+. ..++++++. +.|.-+... + ..+ ....
T Consensus 227 ~g~rVaVQG-fGNVG~~aA~~L~e~---GAkVVaVSD--~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~ 300 (444)
T PRK14031 227 KGKVCLVSG-SGNVAQYTAEKVLEL---GGKVVTMSD--SDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY 300 (444)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHC---CCEEEEEEC--CCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE
Confidence 357999999 699999999999875 456666643 222111000 0 000 0111
Q ss_pred cCccC-C-CCCcEEEec-CCCchhhhhHHHHHhCCCEEEE
Q 023678 94 LTEDS-F-DGVDIALFS-AGGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 94 ~d~~~-~-~~~DvVf~a-~g~~~s~~~~~~~~~aG~~VID 130 (279)
.+.++ | .+||+.|-| ++..+..+.++++...||++|-
T Consensus 301 i~~d~~~~~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~ 340 (444)
T PRK14031 301 VEGARPWGEKGDIALPSATQNELNGDDARQLVANGVIAVS 340 (444)
T ss_pred cCCcccccCCCcEEeecccccccCHHHHHHHHhcCCeEEE
Confidence 12222 3 479998876 5667888999999889998774
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.43 Score=41.47 Aligned_cols=31 Identities=10% Similarity=0.254 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|+||||.+|+.+++.|.++++ +++++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~---~V~~~ 36 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY---KVAIT 36 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC---EEEEe
Confidence 46899999999999999999998753 55555
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.68 Score=40.37 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=26.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+..++.|.||+|.+|+.+++.|.++++ +++.+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~---~V~~~ 39 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA---RVVAA 39 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC---EEEEE
Confidence 346899999999999999999998754 45544
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.73 Score=42.72 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=40.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeee----CCceeEEeecC--ccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSF----QDKAYTVEELT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~----~~~~~~v~~~d--~~~~~~~DvVf~a~g~ 111 (279)
.+|.|+|| |-+|+.++..|...+ ..++.++ .|. ..+ .+.. ......+...+ .+.+.++|+|+.|++.
T Consensus 128 k~vlIlGa-GGaaraia~aL~~~G--~~~I~I~-nR~-~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~ 202 (284)
T PRK12549 128 ERVVQLGA-GGAGAAVAHALLTLG--VERLTIF-DVD-PARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT 202 (284)
T ss_pred CEEEEECC-cHHHHHHHHHHHHcC--CCEEEEE-CCC-HHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence 58999995 779999999998774 3344444 332 221 1110 01112222222 1235678999999887
Q ss_pred ch
Q 023678 112 SI 113 (279)
Q Consensus 112 ~~ 113 (279)
+.
T Consensus 203 Gm 204 (284)
T PRK12549 203 GM 204 (284)
T ss_pred CC
Confidence 64
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.7 Score=40.39 Aligned_cols=31 Identities=10% Similarity=0.408 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.++.|.|++|.+|+.+++.|.++++ +++.+
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~---~V~~~ 36 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW---DLALV 36 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998854 44444
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.78 Score=40.98 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..++.|.||||.+|+++.+.|.++++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~ 31 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA 31 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998754
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.38 Score=42.17 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=23.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..++.|.||+|.+|+++++.|.++++
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~ 29 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGY 29 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998853
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.86 Score=42.81 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=60.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
+..+|.|||.+..||+=|..+|.+++.- ...+....|+. + ++ .+....+|+|+.|.|..- -
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---~------------~l-~~~~~~ADIvIsAvGkp~--~ 217 (297)
T PRK14167 156 EGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT---D------------DL-AAKTRRADIVVAAAGVPE--L 217 (297)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC---C------------CH-HHHHhhCCEEEEccCCcC--c
Confidence 3579999999999999999999875100 22322222211 0 00 122467999999988642 3
Q ss_pred hHHHHHhCCCEEEEcCCCCCCCCC---CceeeccCCHHhhhc
Q 023678 117 FGPIAVEKGSIVVDNSSAFRMVEN---VPLVIPEVNPEAMSG 155 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~~~R~~~~---vplvvPevN~~~i~~ 155 (279)
+-....+.|+.|||.+-.+ .++. ..-.+-.|+.+.++.
T Consensus 218 i~~~~ik~gaiVIDvGin~-~~~~~~~g~kl~GDVd~e~v~~ 258 (297)
T PRK14167 218 IDGSMLSEGATVIDVGINR-VDADTEKGYELVGDVEFESAKE 258 (297)
T ss_pred cCHHHcCCCCEEEEccccc-cCcccccCCceeecCcHHHHHh
Confidence 3445678999999987554 2220 112456666665553
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.62 Score=41.15 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=24.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|+|.|.||||.+|..+.+.|.++++ +++.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~---~V~~~ 30 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH---KVIAT 30 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 5799999999999999999998754 44444
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.51 Score=44.14 Aligned_cols=103 Identities=18% Similarity=0.302 Sum_probs=59.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHc-CCCCceEEEEEeecCCCCceeee----CCceeEEeecCc-cCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSF----QDKAYTVEELTE-DSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~-~~~p~~~l~~l~s~~s~G~~~~~----~~~~~~v~~~d~-~~~~~~DvVf~a~g~ 111 (279)
+..+++|+| +|..|+..++.+.. + +..++ .+.+|.. .+...+ ......+.-.+. +...++|+|+.|+++
T Consensus 124 ~~~~v~IiG-aG~qa~~~~~al~~~~--~~~~v-~v~~r~~-~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s 198 (304)
T PRK07340 124 PPGDLLLIG-TGVQARAHLEAFAAGL--PVRRV-WVRGRTA-ASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTS 198 (304)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhC--CCCEE-EEEcCCH-HHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCC
Confidence 347899999 69999999999864 4 44444 4444432 111111 001112221122 345789999999997
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
.. .+.....+.|+.|+-.+++.. ...|+.++.++
T Consensus 199 ~~--Pl~~~~~~~g~hi~~iGs~~p-------~~~El~~~~~~ 232 (304)
T PRK07340 199 RT--PVYPEAARAGRLVVAVGAFTP-------DMAELAPRTVR 232 (304)
T ss_pred CC--ceeCccCCCCCEEEecCCCCC-------CcccCCHHHHh
Confidence 64 233334578888876655431 13466666665
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.56 E-value=1.3 Score=39.72 Aligned_cols=31 Identities=16% Similarity=0.410 Sum_probs=25.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~---~Vi~~ 44 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGA---KVIGL 44 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 35899999999999999999988753 44444
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.45 Score=42.17 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=26.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++..+|.|+||+|.+|..+.+.|.++++ +++.+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~---~v~~~ 37 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA---TVVVG 37 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEE
Confidence 3456899999999999999999998753 44444
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.58 Score=44.20 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=51.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee--C-CceeEEeecC--ccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--Q-DKAYTVEELT--EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~--~-~~~~~v~~~d--~~~~~~~DvVf~a~g~~ 112 (279)
..+++|+| +|..|+..+..+... .+..+ +.+.+|+.. .+.+.. . ...+.+...+ .+.+.++|+|+.|++..
T Consensus 132 ~~~v~IiG-aG~~a~~~~~al~~~-~~~~~-V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 132 ASRAAVIG-AGEQARLQLEALTLV-RPIRE-VRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhc-CCCCE-EEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 46899999 588899888887642 13334 344444321 111110 0 0012222222 23356899999999875
Q ss_pred hhhhhH-HHHHhCCCEEEEcCCCC
Q 023678 113 ISKKFG-PIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 113 ~s~~~~-~~~~~aG~~VIDlS~~~ 135 (279)
. .+. ...++.|..|....++.
T Consensus 209 ~--p~i~~~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 209 E--PILKAEWLHPGLHVTAMGSDA 230 (330)
T ss_pred C--cEecHHHcCCCceEEeeCCCC
Confidence 3 333 33467898888776654
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.50 E-value=1.7 Score=40.51 Aligned_cols=94 Identities=20% Similarity=0.314 Sum_probs=60.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|.+..||+=|..+|.+++ ..+....|+ . + ++ .+....+|+|+.|+|...- +
T Consensus 156 ~Gk~vvViGrS~~VG~Pla~lL~~~~---AtVti~hs~-T--~------------~l-~~~~~~ADIvV~AvGkp~~--i 214 (281)
T PRK14183 156 KGKDVCVVGASNIVGKPMAALLLNAN---ATVDICHIF-T--K------------DL-KAHTKKADIVIVGVGKPNL--I 214 (281)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC---CEEEEeCCC-C--c------------CH-HHHHhhCCEEEEecCcccc--c
Confidence 35799999999999999999998763 333322211 0 1 01 1224678999999986532 4
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-....+.|+.|||.+-.+ .+++ -++-.|+.+....
T Consensus 215 ~~~~vk~gavvIDvGin~-~~~g--kl~GDVd~~~~~~ 249 (281)
T PRK14183 215 TEDMVKEGAIVIDIGINR-TEDG--RLVGDVDFENVAK 249 (281)
T ss_pred CHHHcCCCcEEEEeeccc-cCCC--CeECCccHHHHHh
Confidence 456678999999987654 2222 2556677666553
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.69 Score=44.52 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=51.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee-eCCceeEEeecC----ccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS-FQDKAYTVEELT----EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~-~~~~~~~v~~~d----~~~~~~~DvVf~a~g~~ 112 (279)
..+|.|+|+ |-+|+..++.|...+. ++.++ +++..- ..+. ..+..+.....+ .+.+.++|+||.|++..
T Consensus 167 ~~~VlViGa-G~vG~~aa~~a~~lGa---~V~v~-d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~ 241 (370)
T TIGR00518 167 PGDVTIIGG-GVVGTNAAKMANGLGA---TVTIL-DINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIP 241 (370)
T ss_pred CceEEEEcC-CHHHHHHHHHHHHCCC---eEEEE-ECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccC
Confidence 468999995 9999999999987753 44444 332110 0010 001111111111 12246899999997321
Q ss_pred -------hhhhhHHHHHhCCCEEEEcCCC
Q 023678 113 -------ISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 113 -------~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
+.++.... .+.|..|||++.+
T Consensus 242 g~~~p~lit~~~l~~-mk~g~vIvDva~d 269 (370)
T TIGR00518 242 GAKAPKLVSNSLVAQ-MKPGAVIVDVAID 269 (370)
T ss_pred CCCCCcCcCHHHHhc-CCCCCEEEEEecC
Confidence 23444433 4678899998865
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=89.41 E-value=0.81 Score=43.82 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=60.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|||-+..||+=|.-+|.+++ ..+....|+. + ++ .+....+|+|+.|+|...- +-
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~~---ATVTicHs~T---~------------nl-~~~~~~ADIvIsAvGkp~~--v~ 272 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRHD---ATVSTVHAFT---K------------DP-EQITRKADIVIAAAGIPNL--VR 272 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHCC---CEEEEEcCCC---C------------CH-HHHHhhCCEEEEccCCcCc--cC
Confidence 5799999999999999999998762 3443343321 0 00 1224678999999986532 34
Q ss_pred HHHHhCCCEEEEcCCCCCCCCC----CceeeccCCHHhhh
Q 023678 119 PIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMS 154 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~----vplvvPevN~~~i~ 154 (279)
....+.|+.|||.+-.+ .++. ..-++-.|+.+...
T Consensus 273 ~d~vk~GavVIDVGin~-~~~~~~~~g~klvGDVdfe~v~ 311 (345)
T PLN02897 273 GSWLKPGAVVIDVGTTP-VEDSSCEFGYRLVGDVCYEEAL 311 (345)
T ss_pred HHHcCCCCEEEEccccc-cccccccCCCeeEecccHHHHH
Confidence 55678999999987654 3221 11355666655554
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.39 E-value=0.78 Score=40.43 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=26.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+..+|.|.||+|.+|+++++.|.++++ +++.+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~---~v~~~ 37 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA---KVVVA 37 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEE
Confidence 357899999999999999999998753 55555
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.37 E-value=3.7 Score=38.24 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=45.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--------CCCceeeeCCceeEEe--ecCccCCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--------SAGKQLSFQDKAYTVE--ELTEDSFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--------s~G~~~~~~~~~~~v~--~~d~~~~~~~DvVf~a~ 109 (279)
|||+|+| .|.+|.-+.-.|.+.++ ++.+++... .-|-.+...+....+. ..+.+....+|+||.|+
T Consensus 3 m~I~IiG-aGaiG~~~a~~L~~~G~---~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILG-AGSLGSLWACRLARAGL---PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEEC-CCHHHHHHHHHHHhCCC---CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC
Confidence 6899999 59999999999987754 344454321 1122222112111111 11122335789999998
Q ss_pred CCchhhhhHHHH
Q 023678 110 GGSISKKFGPIA 121 (279)
Q Consensus 110 g~~~s~~~~~~~ 121 (279)
-+....+..+.+
T Consensus 79 K~~~~~~al~~l 90 (305)
T PRK05708 79 KAYDAEPAVASL 90 (305)
T ss_pred CHHhHHHHHHHH
Confidence 877665555544
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.37 E-value=1.1 Score=44.93 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=53.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCce---e-------eeCCc-----------eeEEeecCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQ---L-------SFQDK-----------AYTVEELTE 96 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~---~-------~~~~~-----------~~~v~~~d~ 96 (279)
..||+|||+ |..|..+...|..+||+ +.+...... ..+. + ...+. .+... .+.
T Consensus 7 i~~V~VIGa-G~MG~gIA~~la~aG~~---V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 81 (507)
T PRK08268 7 IATVAVIGA-GAMGAGIAQVAAQAGHT---VLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL 81 (507)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence 468999995 99999999999887654 444421111 0010 0 00110 12222 123
Q ss_pred cCCCCCcEEEecCCCchhhhh-----HHHHHhCCCEEEEcCCCCCC
Q 023678 97 DSFDGVDIALFSAGGSISKKF-----GPIAVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 97 ~~~~~~DvVf~a~g~~~s~~~-----~~~~~~aG~~VIDlS~~~R~ 137 (279)
+++.++|+||.|++.+...+. +..+...++.+..++|....
T Consensus 82 ~~~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i 127 (507)
T PRK08268 82 ADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI 127 (507)
T ss_pred HHhCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 446799999999988755322 22333466676566776643
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.8 Score=39.84 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=23.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..++.|.||||.+|+++++.|.++++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~ 31 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA 31 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998753
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.42 Score=41.50 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=24.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++.|.||+|.+|+.+.+.|.+++ .+++.+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G---~~v~~~ 31 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADG---WRVIAT 31 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCC---CEEEEE
Confidence 478999999999999999998764 355554
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=89.32 E-value=3.5 Score=36.55 Aligned_cols=92 Identities=18% Similarity=0.295 Sum_probs=53.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee----cCC----------CCceeee--------CCceeEEe----
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRS----------AGKQLSF--------QDKAYTVE---- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s----~~s----------~G~~~~~--------~~~~~~v~---- 92 (279)
..+|+|+|+ |-+|.++++.|...|.. ++.++.. ... .|++-.. ....+.+.
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gvg--~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~ 104 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGVG--NLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE 104 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCC--eEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence 468999995 99999999999988554 3333311 111 1211000 01112222
Q ss_pred ecCc----cCCCCCcEEEecCCCchhhh-hHHHHHhC-CCEEEEcCC
Q 023678 93 ELTE----DSFDGVDIALFSAGGSISKK-FGPIAVEK-GSIVVDNSS 133 (279)
Q Consensus 93 ~~d~----~~~~~~DvVf~a~g~~~s~~-~~~~~~~a-G~~VIDlS~ 133 (279)
.++. +.+.++|+||.|++...++. +...+.+. +..+|..++
T Consensus 105 ~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~ 151 (212)
T PRK08644 105 KIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASG 151 (212)
T ss_pred ecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeeh
Confidence 1221 23568999999988877755 34555666 888775443
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.31 E-value=0.34 Score=47.38 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=26.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
++++|.|.||+|.+|+++.+.|.++++ +++.+.
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~---~Vi~l~ 209 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA---KVVALT 209 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEe
Confidence 357899999999999999999988753 555553
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=0.76 Score=40.59 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..+|.|.||+|.+|+.+.+.|.+++.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~ 31 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA 31 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998743
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.46 Score=41.52 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|+||||.+|+++++.|.++++ +++.+
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~---~V~~~ 35 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA---RVVVT 35 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 44444
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.72 Score=46.00 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=26.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.++|.|-||||++|+.|++.|.+.+....++.++.
T Consensus 11 ~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~Lv 45 (491)
T PLN02996 11 NKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLL 45 (491)
T ss_pred CCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 46899999999999999999876432334666665
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=89.06 E-value=1.7 Score=41.86 Aligned_cols=91 Identities=16% Similarity=0.206 Sum_probs=55.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec---------------CCCCceeee--------CCceeEEee--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---------------RSAGKQLSF--------QDKAYTVEE-- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~---------------~s~G~~~~~--------~~~~~~v~~-- 93 (279)
..||.|+|+ |-+|.++++.|...|.. ++.++... +..|+.-.. ....+.+..
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gvg--~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGVG--TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCCC--eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 468999995 88999999999988543 44444211 112221110 011222221
Q ss_pred --cCc----cCCCCCcEEEecCCCchhhhhHHH-HHhCCCEEEEcC
Q 023678 94 --LTE----DSFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNS 132 (279)
Q Consensus 94 --~d~----~~~~~~DvVf~a~g~~~s~~~~~~-~~~aG~~VIDlS 132 (279)
++. +.+.++|+|+.|++...++.+..+ +.+.|+.+|..+
T Consensus 212 ~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 212 ERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred ccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 111 124689999999999877766554 567899888653
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.05 E-value=1.3 Score=46.44 Aligned_cols=92 Identities=23% Similarity=0.268 Sum_probs=56.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe----ecCC----------CCceeee--------CCceeEEee---
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRS----------AGKQLSF--------QDKAYTVEE--- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~----s~~s----------~G~~~~~--------~~~~~~v~~--- 93 (279)
..||+|+|+ | +|..++..|...|. .-++.++- ..++ .|++-.. .+..+.|..
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGv-vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGL-CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccC-CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 368999999 8 89999999998752 12333331 1111 2221000 011233322
Q ss_pred -cCcc----CCCCCcEEEecCCCchhhhhHHH-HHhCCCEEEEcCC
Q 023678 94 -LTED----SFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNSS 133 (279)
Q Consensus 94 -~d~~----~~~~~DvVf~a~g~~~s~~~~~~-~~~aG~~VIDlS~ 133 (279)
++.+ .+.++|+|+.|++.-.++.++.. +.+.|+.+|..++
T Consensus 184 ~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 184 GLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred cCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 2221 24689999999999888777754 4678999997665
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=0.56 Score=41.50 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.3
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
++..++.|.||+|.+|+++.+.|.+++.
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~ 32 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGA 32 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCC
Confidence 4456899999999999999999998753
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.2 Score=39.20 Aligned_cols=87 Identities=20% Similarity=0.183 Sum_probs=47.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCccCC-CCCcEEEec-CCCch
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSF-DGVDIALFS-AGGSI 113 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~~~~-~~~DvVf~a-~g~~~ 113 (279)
.+.++|+|+| .|.+|+.+.+.|.+.++ +++ +.+++.. -..+.... .....+. .+.+ .++|+++.| .+.-+
T Consensus 26 l~gk~v~I~G-~G~vG~~~A~~L~~~G~---~Vv-v~D~~~~~~~~~~~~~-g~~~v~~-~~l~~~~~Dv~vp~A~~~~I 98 (200)
T cd01075 26 LEGKTVAVQG-LGKVGYKLAEHLLEEGA---KLI-VADINEEAVARAAELF-GATVVAP-EEIYSVDADVFAPCALGGVI 98 (200)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCC---EEE-EEcCCHHHHHHHHHHc-CCEEEcc-hhhccccCCEEEeccccccc
Confidence 3457999999 59999999999998754 454 3232211 01110000 1111111 1223 379999955 55556
Q ss_pred hhhhHHHHHhCCC-EEEEcCC
Q 023678 114 SKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 114 s~~~~~~~~~aG~-~VIDlS~ 133 (279)
..+.++++ ++ .|++...
T Consensus 99 ~~~~~~~l---~~~~v~~~AN 116 (200)
T cd01075 99 NDDTIPQL---KAKAIAGAAN 116 (200)
T ss_pred CHHHHHHc---CCCEEEECCc
Confidence 66666544 34 4555443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.45 Score=41.74 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=25.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.||+|.+|+.+++.|.++++ +++.+
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~---~V~~~ 36 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA---HVVVN 36 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 44444
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.86 E-value=2.2 Score=37.77 Aligned_cols=91 Identities=12% Similarity=0.249 Sum_probs=54.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC----CCCceeeeCCceeEEeecC---ccCCCCCcEEEecCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR----SAGKQLSFQDKAYTVEELT---EDSFDGVDIALFSAG 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~----s~G~~~~~~~~~~~v~~~d---~~~~~~~DvVf~a~g 110 (279)
+..+|.|||.+..||+=|.-+|.+++ ..+...-++. +.+..+ .+......+.+ .+....+|+|+.|.|
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~---AtVti~~~~~~~~~~~~~~~--~hs~t~~~~~~~~l~~~~~~ADIVIsAvG 135 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDG---ARVYSVDINGIQVFTRGESI--RHEKHHVTDEEAMTLDCLSQSDVVITGVP 135 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC---CEEEEEecCccccccccccc--ccccccccchhhHHHHHhhhCCEEEEccC
Confidence 35799999999999999999998763 3433331110 000000 01000001100 123478999999998
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
...-. +-....+.|+.|||.+..
T Consensus 136 ~~~~~-i~~d~ik~GavVIDVGi~ 158 (197)
T cd01079 136 SPNYK-VPTELLKDGAICINFASI 158 (197)
T ss_pred CCCCc-cCHHHcCCCcEEEEcCCC
Confidence 75321 234567889999998865
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=0.61 Score=40.92 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||||.+|+++++.|.++++ +++.+
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~---~v~~~ 34 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA---KVVIA 34 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---eEEEE
Confidence 36899999999999999999998754 55555
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=88.74 E-value=4.8 Score=37.22 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee----cCCCCceeee-------------------CCceeEEee--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRSAGKQLSF-------------------QDKAYTVEE-- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s----~~s~G~~~~~-------------------~~~~~~v~~-- 93 (279)
..+|.|+| .|-||.++++.|...|.- ++.++-. ....++.+-+ .+....+..
T Consensus 30 ~s~VlVvG-~GGVGs~vae~Lar~GVg--~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~ 106 (268)
T PRK15116 30 DAHICVVG-IGGVGSWAAEALARTGIG--AITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD 106 (268)
T ss_pred CCCEEEEC-cCHHHHHHHHHHHHcCCC--EEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence 46899999 699999999999987533 3333321 1112211100 011222221
Q ss_pred --cCcc----CC-CCCcEEEecCCCchhhh-hHHHHHhCCCEEEEcCCC-CCCCC
Q 023678 94 --LTED----SF-DGVDIALFSAGGSISKK-FGPIAVEKGSIVVDNSSA-FRMVE 139 (279)
Q Consensus 94 --~d~~----~~-~~~DvVf~a~g~~~s~~-~~~~~~~aG~~VIDlS~~-~R~~~ 139 (279)
++++ .+ .+.|+|+.|.+.-.++. +...+.+.++++|...++ -|+|+
T Consensus 107 ~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 107 DFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred cccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCC
Confidence 1111 12 46899999999865554 444556789998866555 44454
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.69 E-value=0.78 Score=40.38 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=25.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||||.+|+.+.+.|.++++ +++.+
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~---~V~~~ 35 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA---DVVLA 35 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC---EEEEE
Confidence 46899999999999999999998854 54444
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=88.62 E-value=0.7 Score=47.47 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=27.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEee
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLAS 74 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s 74 (279)
.++|.|.||||++|..|++.|.+.. |. .++.++..
T Consensus 119 ~k~VlVTGaTGFLGk~LlekLLr~~-~~v~kIy~LvR 154 (605)
T PLN02503 119 GKNFLITGATGFLAKVLIEKILRTN-PDVGKIYLLIK 154 (605)
T ss_pred CCEEEEcCCchHHHHHHHHHHHHhC-CCCcEEEEEEe
Confidence 5789999999999999999988654 44 46666643
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=88.56 E-value=0.7 Score=44.83 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=48.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-----
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI----- 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~----- 113 (279)
..+|+||| .|.||+.+.+.|..-| .++... ++.... .+....+.+++ +.+..+|+|++++|-+.
T Consensus 116 gktvGIIG-~G~IG~~vA~~l~a~G---~~V~~~-dp~~~~-----~~~~~~~~~L~-ell~~sDiI~lh~PLt~~g~~~ 184 (378)
T PRK15438 116 DRTVGIVG-VGNVGRRLQARLEALG---IKTLLC-DPPRAD-----RGDEGDFRSLD-ELVQEADILTFHTPLFKDGPYK 184 (378)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCC---CEEEEE-CCcccc-----cccccccCCHH-HHHhhCCEEEEeCCCCCCcccc
Confidence 57999999 7999999999997653 354444 321110 01011112221 23568999999988543
Q ss_pred hhhhH--H--HHHhCCCEEEEcC
Q 023678 114 SKKFG--P--IAVEKGSIVVDNS 132 (279)
Q Consensus 114 s~~~~--~--~~~~aG~~VIDlS 132 (279)
+.... . ...+.|+.+|..+
T Consensus 185 T~~li~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 185 TLHLADEKLIRSLKPGAILINAC 207 (378)
T ss_pred cccccCHHHHhcCCCCcEEEECC
Confidence 22111 1 2246788888654
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=88.49 E-value=1 Score=42.88 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=55.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec---------------CCCCc--eee--------eCCceeEEe-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---------------RSAGK--QLS--------FQDKAYTVE- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~---------------~s~G~--~~~--------~~~~~~~v~- 92 (279)
..||.|+|+ |-+|.+++..|...|.- ++.++... +..|+ +-. .....+.+.
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGVG--KVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA 100 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC--eEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 468999996 99999999999987543 44444211 01211 100 001122222
Q ss_pred ---ecCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 93 ---ELTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 93 ---~~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
+++. +.+.++|+|+.|++...++.+...+ .+.|..+|..+
T Consensus 101 ~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 101 IVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred EeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 2222 1257899999999988877766554 57888888543
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.43 E-value=1 Score=42.45 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=26.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+..+|.|.||+|-+|+++.+.|.++++ +++++
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~---~Vvl~ 37 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA---RLVLA 37 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 346899999999999999999998753 45544
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=88.40 E-value=1 Score=43.41 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=60.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|||.+..||+=|..+|.+++ ..+....|+. + ++ .+....+|+|+.|.|...- +-
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~~---ATVTicHs~T---~------------nl-~~~~r~ADIVIsAvGkp~~--i~ 289 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQRED---ATVSIVHSRT---K------------NP-EEITREADIIISAVGQPNM--VR 289 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHCC---CeEEEeCCCC---C------------CH-HHHHhhCCEEEEcCCCcCc--CC
Confidence 5799999999999999999998762 3433333221 0 00 1224678999999986532 34
Q ss_pred HHHHhCCCEEEEcCCCCCCCCC----CceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~----vplvvPevN~~~i~~ 155 (279)
....+.|+.|||..=.+ .+++ ..-++-.|+-+....
T Consensus 290 ~d~vK~GAvVIDVGIn~-~~~~~~~~g~klvGDVdfe~v~~ 329 (364)
T PLN02616 290 GSWIKPGAVVIDVGINP-VEDASSPRGYRLVGDVCYEEACK 329 (364)
T ss_pred HHHcCCCCEEEeccccc-cccccccCCCeEEecCcHHHHHh
Confidence 55678999999987554 3221 113566677555543
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.35 E-value=0.81 Score=40.10 Aligned_cols=30 Identities=10% Similarity=0.381 Sum_probs=24.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++.|.||+|.+|+.+.+.|.+++ .+++++
T Consensus 3 k~vlItGas~giG~~la~~l~~~g---~~v~~~ 32 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKG---RDLALC 32 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC---CEEEEE
Confidence 579999999999999999999874 244444
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=88.34 E-value=0.86 Score=43.50 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=49.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee------CC-ce-----eEEeecCccCCCCCcEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF------QD-KA-----YTVEELTEDSFDGVDIAL 106 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~------~~-~~-----~~v~~~d~~~~~~~DvVf 106 (279)
..+|+|+| .|.+|+.+.+.|..-| .++... ++. ....... .. .. ....++ .+.+..+|+|+
T Consensus 159 gktvGIiG-~G~IG~~vA~~l~afG---~~V~~~-dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~ell~~aDiVv 231 (347)
T PLN02928 159 GKTVFILG-YGAIGIELAKRLRPFG---VKLLAT-RRS-WTSEPEDGLLIPNGDVDDLVDEKGGHEDI-YEFAGEADIVV 231 (347)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhhCC---CEEEEE-CCC-CChhhhhhhccccccccccccccCcccCH-HHHHhhCCEEE
Confidence 47999999 7999999999997653 355444 332 1110000 00 00 011111 13357899999
Q ss_pred ecCCCchh-hhhH--H--HHHhCCCEEEEcC
Q 023678 107 FSAGGSIS-KKFG--P--IAVEKGSIVVDNS 132 (279)
Q Consensus 107 ~a~g~~~s-~~~~--~--~~~~aG~~VIDlS 132 (279)
+++|-+.. +.+. . ...+.|+.+|+.+
T Consensus 232 l~lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 232 LCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred ECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 99985433 2221 1 1236788888765
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.28 E-value=0.91 Score=39.86 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=25.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++|.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~---~V~~~ 31 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT---HVISI 31 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC---EEEEE
Confidence 4799999999999999999998753 55544
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.25 E-value=0.57 Score=42.04 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=25.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
...+.|.||||.+|+.+++.|.++++ +++.+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~---~V~~~ 33 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY---LVIAT 33 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC---EEEEE
Confidence 45799999999999999999998754 45555
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.21 E-value=0.81 Score=40.05 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=25.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.++.|.||||++|+.|++.|.++++ +++++.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~---~v~~~~ 32 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA---NVVVND 32 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC---EEEEEe
Confidence 4799999999999999999988754 555553
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.20 E-value=0.87 Score=40.07 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..+|.|.||+|.+|+++++.|.++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~ 31 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA 31 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998753
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=0.92 Score=39.48 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=26.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
..+|.|.||+|++|+.+.+.|.++++ +++.+.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~---~v~~~~ 37 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY---RVAIHY 37 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEc
Confidence 36899999999999999999998743 555553
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.18 E-value=0.73 Score=42.58 Aligned_cols=36 Identities=17% Similarity=0.454 Sum_probs=29.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK 75 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~ 75 (279)
+++.++.|.|||+=+|.++.+.|+++++ ++++++.+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~---~liLvaR~ 39 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY---NLILVARR 39 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCc
Confidence 4457899999999999999999999855 56677533
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=88.16 E-value=3 Score=38.36 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=54.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-----CCCceee----------eCC---ceeE-----Eeec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-----SAGKQLS----------FQD---KAYT-----VEEL 94 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-----s~G~~~~----------~~~---~~~~-----v~~~ 94 (279)
+..||+|-| .|.||+.+.+.|.+. ..+++.++..+ ..|-.+. ..+ ..+. ...+
T Consensus 37 ~g~~vaIqG-fGnVG~~~a~~L~e~---GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 37 KGKRVAISG-SGNVAQYAAEKLLEL---GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHC---CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 357999999 899999999999886 35777675421 1121110 000 0000 1112
Q ss_pred Ccc-CC-CCCcEEEec-CCCchhhhhHHHHHhCCCEEEE
Q 023678 95 TED-SF-DGVDIALFS-AGGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 95 d~~-~~-~~~DvVf~a-~g~~~s~~~~~~~~~aG~~VID 130 (279)
+.+ .| .+|||.+-| ++..+..+.++++.+.+|++|=
T Consensus 113 ~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~ 151 (254)
T cd05313 113 EGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVA 151 (254)
T ss_pred CCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEE
Confidence 222 23 378988766 5667778888888878888773
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=0.79 Score=46.21 Aligned_cols=87 Identities=8% Similarity=0.135 Sum_probs=51.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchh-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS-KKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s-~~~ 117 (279)
.++|+|+| .|.+|+.+.+.|..-+ .++..+ ++..........+ ....++ .+.+..+|+|++++|.+.. +.+
T Consensus 140 gktvgIiG-~G~IG~~vA~~l~~fG---~~V~~~-d~~~~~~~~~~~g--~~~~~l-~ell~~aDiV~l~lP~t~~t~~l 211 (526)
T PRK13581 140 GKTLGIIG-LGRIGSEVAKRAKAFG---MKVIAY-DPYISPERAAQLG--VELVSL-DELLARADFITLHTPLTPETRGL 211 (526)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCC---CEEEEE-CCCCChhHHHhcC--CEEEcH-HHHHhhCCEEEEccCCChHhhcC
Confidence 47899999 7999999999997653 355544 3221111000011 112222 1345789999999997633 222
Q ss_pred H----HHHHhCCCEEEEcCC
Q 023678 118 G----PIAVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~----~~~~~aG~~VIDlS~ 133 (279)
. -...+.|+.+|+.+-
T Consensus 212 i~~~~l~~mk~ga~lIN~aR 231 (526)
T PRK13581 212 IGAEELAKMKPGVRIINCAR 231 (526)
T ss_pred cCHHHHhcCCCCeEEEECCC
Confidence 2 122467899997764
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=88.15 E-value=0.61 Score=41.73 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=21.8
Q ss_pred EECcCcHHHHHHHHHHHcCCCCceEEEEEee
Q 023678 44 VVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (279)
Q Consensus 44 IiGATG~VG~eLl~lL~~~~~p~~~l~~l~s 74 (279)
|-||||++|+.|++.|.++. +..++..+..
T Consensus 1 lTGaTGflG~~ll~~Ll~~~-~~~~I~cLvR 30 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQP-PDVKIYCLVR 30 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS--TTEEEEEE-
T ss_pred CcCCCcHHHHHHHHHHHcCC-CCcEEEEEEe
Confidence 57999999999999988773 2247777753
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.33 Score=42.16 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=20.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFP 65 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p 65 (279)
|||+|+| .||+|..+.-.|+++||.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~ 25 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQ 25 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSE
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCE
Confidence 7999999 899999999999998764
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.11 E-value=0.76 Score=43.32 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=77.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|+-|| .|.-|..++.-|...+|. +.... +...+...|...-..+.+-..+..+.+|+||.+++.....+.
T Consensus 34 s~~~iGFIG-LG~MG~~M~~nLik~G~k---VtV~d--r~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~ 107 (327)
T KOG0409|consen 34 SKTRIGFIG-LGNMGSAMVSNLIKAGYK---VTVYD--RTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKD 107 (327)
T ss_pred ccceeeEEe-eccchHHHHHHHHHcCCE---EEEEe--CcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHH
Confidence 367999999 999999999999988764 44443 222211111100111211111223578888888887654332
Q ss_pred HHH-------HHhCCCEE-EEcCCCCCCCCCC-------------ceeeccCCHHhhhccccCCCCCcEEECCCChHHHH
Q 023678 118 GPI-------AVEKGSIV-VDNSSAFRMVENV-------------PLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIIC 176 (279)
Q Consensus 118 ~~~-------~~~aG~~V-IDlS~~~R~~~~v-------------plvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l 176 (279)
+-. ....|.+. ||.|.. |++. .++=..|....... .+..++--.| ..-++
T Consensus 108 v~~g~~Gvl~g~~~g~~~~vDmSTi---dp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A-----~~G~Ltimag-Gde~~ 178 (327)
T KOG0409|consen 108 VLLGKSGVLSGIRPGKKATVDMSTI---DPDTSLEIAKAISNKGGRFVDAPVSGGVKGA-----EEGTLTIMAG-GDEAL 178 (327)
T ss_pred HhcCCCcceeeccCCCceEEecccc---CHHHHHHHHHHHHhCCCeEEeccccCCchhh-----hcCeEEEEec-CcHHH
Confidence 210 01123333 777653 3321 12222222211110 0223333333 35666
Q ss_pred HHhhhchhhhcCccEEEEEEeecccccChhh
Q 023678 177 LMAATPLHRRAKVTRMVVSTYQAASGAGAAA 207 (279)
Q Consensus 177 ~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~ 207 (279)
.-.+.|+++.-+ + -..|-|.+|.|.+.
T Consensus 179 ~~~~~~~~~~mG-k---~~~~~G~~GnG~~~ 205 (327)
T KOG0409|consen 179 FEAASPVFKLMG-K---NVVFLGGVGNGQAA 205 (327)
T ss_pred HHHHHHHHHHhc-c---eEEEecccCchHHH
Confidence 777888877543 1 24578999999776
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.7 Score=42.99 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=53.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-ee-eeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QL-SFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~-~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
+.||.|+| .|-.|+.+++.|.+.++ ++... .++.... .+ ...+..+.....+.+.+.+.|+|+.+-+-.....
T Consensus 15 ~~~v~v~G-~G~sG~a~a~~L~~~G~---~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p 89 (473)
T PRK00141 15 SGRVLVAG-AGVSGRGIAAMLSELGC---DVVVA-DDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSP 89 (473)
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCC---EEEEE-CCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCH
Confidence 35799999 79999999999998753 33333 3321111 11 1111111111112233567899998877666667
Q ss_pred hHHHHHhCCCEEEE
Q 023678 117 FGPIAVEKGSIVVD 130 (279)
Q Consensus 117 ~~~~~~~aG~~VID 130 (279)
...++.+.|+.|+.
T Consensus 90 ~~~~a~~~gi~v~~ 103 (473)
T PRK00141 90 LLVDAQSQGLEVIG 103 (473)
T ss_pred HHHHHHHCCCceee
Confidence 78888899999884
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.67 Score=40.20 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||||.+|+.+.+.|.++++ +++.+
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~---~v~~~ 33 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH---QVIGI 33 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998753 55555
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.2 Score=41.64 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=54.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee----C---CceeEEeecCccCCCCCcEEEecCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF----Q---DKAYTVEELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~----~---~~~~~v~~~d~~~~~~~DvVf~a~g 110 (279)
+..+++|+| +|.-|+.-++.+..- +|..++. +.+|.. .+.-.| . +.++.+.+-..+...++|+|+.||+
T Consensus 116 da~~l~iiG-aG~QA~~~~~a~~~v-~~i~~v~-v~~r~~-~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~ 191 (301)
T PRK06407 116 NVENFTIIG-SGFQAETQLEGMASV-YNPKRIR-VYSRNF-DHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITN 191 (301)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhc-CCCCEEE-EECCCH-HHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecC
Confidence 357899999 899999988887653 3544544 444432 221111 0 1122222111234578999999999
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
+..- -+-...++.|..|+-..++
T Consensus 192 s~~P-~~~~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 192 SDTP-IFNRKYLGDEYHVNLAGSN 214 (301)
T ss_pred CCCc-EecHHHcCCCceEEecCCC
Confidence 7642 1223456789888766554
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.87 Score=42.24 Aligned_cols=67 Identities=21% Similarity=0.409 Sum_probs=39.8
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cceeee------CCceeEEee-cCccCCCCCcEEEecCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSF------QDKAYTVEE-LTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~~~~~------~~~~~~v~~-~d~~~~~~~DvVf~a~g~ 111 (279)
|+|+|| |++|..+...|..+++- +++++.-.... |..+.. ......+.. .|.+++.++|+||.+.+.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~--eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG--DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc--EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCC
Confidence 689997 99999999988876432 66666322211 111110 111223332 233457899999998863
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.99 E-value=0.73 Score=41.55 Aligned_cols=31 Identities=10% Similarity=0.146 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+++|.|.||+|.+|+.+++.|.++++ +++.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~---~V~~~ 34 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH---RVVGT 34 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC---EEEEE
Confidence 46799999999999999999998753 45554
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.97 E-value=1.3 Score=39.39 Aligned_cols=31 Identities=10% Similarity=0.315 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.|++|.+|+.+.+.|.++++ +++.+
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~---~V~~~ 37 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC---HLHLV 37 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC---EEEEE
Confidence 46899999999999999999998743 55555
|
|
| >KOG2742 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.92 E-value=0.23 Score=47.38 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=57.6
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecCccCC-CCCcEEEecCCCchhhhhH
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s~~~~ 118 (279)
|+|+| ||..-+.++-+|.+- + +++.++..|...-. ..++.........+|+-.+ .++|.|+.+++.-..+++.
T Consensus 5 v~v~G-Tg~~arv~iP~l~e~--~-f~v~A~w~Rt~~ea~a~aa~~~v~~~t~~~deiLl~~~vdlv~i~lpp~~~~eI~ 80 (367)
T KOG2742|consen 5 VGVFG-TGIFARVLIPLLKEE--G-FEVKAIWGRTKTEAKAKAAEMNVRKYTSRLDEILLDQDVDLVCISLPPPLHAEIV 80 (367)
T ss_pred eeEec-cChhHhhhhhhhhhc--c-chHhhhhchhhhHHHHhhhccchhhccccchhhhccCCcceeEeccCCccceeee
Confidence 99999 999999998888876 4 67777766521100 0001001111112222112 4789999999999999999
Q ss_pred HHHHhCCCEEE-EcCC
Q 023678 119 PIAVEKGSIVV-DNSS 133 (279)
Q Consensus 119 ~~~~~aG~~VI-DlS~ 133 (279)
.+++..|..|| |..+
T Consensus 81 ~kal~~Gk~Vvcek~a 96 (367)
T KOG2742|consen 81 VKALGIGKHVVCEKPA 96 (367)
T ss_pred eccccCCceEEeccCC
Confidence 99999999777 4443
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=87.88 E-value=0.74 Score=43.84 Aligned_cols=80 Identities=6% Similarity=0.029 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCCCceEEEEEeecCCCCc-----eeeeCCceeEEeecCccCCCCCcEEEecCCCchh-hhhHHH---
Q 023678 50 AVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-----QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS-KKFGPI--- 120 (279)
Q Consensus 50 ~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-----~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s-~~~~~~--- 120 (279)
|.|+.+.+.|.+.||+ +......++.-. .+...+ ....+...+...++|+||+|++.+.. ++.+..
T Consensus 30 ~gGspMArnLlkAGhe---V~V~Drnrsa~e~e~~e~LaeaG--A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa 104 (341)
T TIGR01724 30 YGGSRMAIEFAMAGHD---VVLAEPNREFMSDDLWKKVEDAG--VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIE 104 (341)
T ss_pred CCHHHHHHHHHHCCCE---EEEEeCChhhhhhhhhHHHHHCC--CeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHh
Confidence 4588999998887664 443422121110 111111 12222112345689999999998764 344332
Q ss_pred HHhCCCEEEEcCCC
Q 023678 121 AVEKGSIVVDNSSA 134 (279)
Q Consensus 121 ~~~aG~~VIDlS~~ 134 (279)
.+..|..|||.|..
T Consensus 105 ~L~~GaIVID~STI 118 (341)
T TIGR01724 105 HVPENAVICNTCTV 118 (341)
T ss_pred cCCCCCEEEECCCC
Confidence 24578999998864
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=87.82 E-value=0.9 Score=44.00 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=52.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-e----eee--CCc-eeEEeecCccCCCCCcEEEecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-Q----LSF--QDK-AYTVEELTEDSFDGVDIALFSA 109 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~----~~~--~~~-~~~v~~~d~~~~~~~DvVf~a~ 109 (279)
...+++|+| +|.-++.-++.+..- +|.++-+.+.+|..... . +.. .+. ++.+.+-..+...++|+|++|+
T Consensus 154 da~~l~iiG-~G~QA~~~l~a~~~v-~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT 231 (379)
T PRK06199 154 DSKVVGLLG-PGVMGKTILAAFMAV-CPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCN 231 (379)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHh-cCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEcc
Confidence 346899999 899999999988762 26555555656543211 1 110 111 1222221123467899999999
Q ss_pred CCchh-----hhhHHHHHhCCCEEE
Q 023678 110 GGSIS-----KKFGPIAVEKGSIVV 129 (279)
Q Consensus 110 g~~~s-----~~~~~~~~~aG~~VI 129 (279)
+.... --+-.+.++.|..|+
T Consensus 232 ~s~~~~~s~~Pv~~~~~lkpG~hv~ 256 (379)
T PRK06199 232 SGETGDPSTYPYVKREWVKPGAFLL 256 (379)
T ss_pred CCCCCCCCcCcEecHHHcCCCcEEe
Confidence 76431 122244567888776
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=0.64 Score=41.14 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=24.2
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
++..++.|.||+|.+|+++.+.|.++++
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~ 33 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGA 33 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 3456899999999999999999998754
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.72 E-value=0.75 Score=39.98 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
+.++.|+||||.+|.++.+.|.++++
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~ 30 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA 30 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 45899999999999999999988753
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.72 E-value=1.1 Score=44.25 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=50.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh-
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK- 116 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~- 116 (279)
...+|+|+| .|.+|+.+.+.|...+. ++++. .++ ..+..........+.+++ +.+.++|+||.|+|....-.
T Consensus 211 ~Gk~VlViG-~G~IG~~vA~~lr~~Ga---~ViV~-d~d-p~ra~~A~~~G~~v~~l~-eal~~aDVVI~aTG~~~vI~~ 283 (425)
T PRK05476 211 AGKVVVVAG-YGDVGKGCAQRLRGLGA---RVIVT-EVD-PICALQAAMDGFRVMTME-EAAELGDIFVTATGNKDVITA 283 (425)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC---EEEEE-cCC-chhhHHHHhcCCEecCHH-HHHhCCCEEEECCCCHHHHHH
Confidence 356899999 59999999999987643 44333 222 111111000011122221 23468999999998643221
Q ss_pred hHHHHHhCCCEEEEcCCCC
Q 023678 117 FGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~~~ 135 (279)
-.-...+.|++++. .+.|
T Consensus 284 ~~~~~mK~GailiN-vG~~ 301 (425)
T PRK05476 284 EHMEAMKDGAILAN-IGHF 301 (425)
T ss_pred HHHhcCCCCCEEEE-cCCC
Confidence 12234568888874 4444
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=87.64 E-value=1.4 Score=42.79 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=41.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CCceeEEeecC------ccCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELT------EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~~~~~v~~~d------~~~~~~~DvVf~a~g~~ 112 (279)
|+|.|+|+ |.+|+.+.+.|.+.++ +++.+......-..+.. .+......+.. ...+.++|.|+.+++.+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~---~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN---DVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC---cEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence 58999996 9999999999988755 34445321111111111 11111122211 12256899999999875
Q ss_pred hhhh
Q 023678 113 ISKK 116 (279)
Q Consensus 113 ~s~~ 116 (279)
....
T Consensus 77 ~~n~ 80 (453)
T PRK09496 77 ETNM 80 (453)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.58 E-value=0.82 Score=40.24 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=24.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+|.|.||||.+|+.+++.|.++++ +++++
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~---~v~~~ 32 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH---NVIAG 32 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 4799999999999999999998753 44444
|
|
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=87.56 E-value=4.9 Score=37.81 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=59.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCC-C--CCcEEEecCCCchhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSF-D--GVDIALFSAGGSISK 115 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~-~--~~DvVf~a~g~~~s~ 115 (279)
.||.|.|-||.-|....+.+.+- ..+++.-.+.+.-+..+. + +.+. .+ .++ . ++|+++.++|.....
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y---gt~~~~gV~p~~~~~~i~--G--~~~y~sv--~dlp~~~~~DlAvI~vPa~~v~ 83 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHL--G--LPVFNTV--AEAKAETKANASVIYVPPPFAA 83 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh---CCcEEEEECCCCCCceEc--C--eeccCCH--HHHhhccCCCEEEEecCHHHHH
Confidence 68999999999999999988764 234554443332112221 1 1221 11 111 1 379999999999999
Q ss_pred hhHHHHHhCCCE-EEEcCCCCC
Q 023678 116 KFGPIAVEKGSI-VVDNSSAFR 136 (279)
Q Consensus 116 ~~~~~~~~aG~~-VIDlS~~~R 136 (279)
..+.++.++|++ +|=.|+-|.
T Consensus 84 ~al~e~~~~Gvk~~vIisaGf~ 105 (300)
T PLN00125 84 AAILEAMEAELDLVVCITEGIP 105 (300)
T ss_pred HHHHHHHHcCCCEEEEECCCCC
Confidence 999999999996 555788884
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=1.2 Score=40.04 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=25.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~---~V~~~ 40 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA---KVAIL 40 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 44444
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=1.1 Score=39.45 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=26.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+++.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~---~v~~~ 41 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGA---HVLVN 41 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC---eEEEE
Confidence 46899999999999999999998754 55555
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.50 E-value=0.69 Score=40.52 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+++.|.||+|++|+.+.+.|.++++ +++.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~---~vi~~ 36 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA---SVVVA 36 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45444
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.48 E-value=5.4 Score=41.65 Aligned_cols=150 Identities=22% Similarity=0.190 Sum_probs=80.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE--ee-----------cCCCCceeee----------CCceeEEe--e
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML--AS-----------KRSAGKQLSF----------QDKAYTVE--E 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l--~s-----------~~s~G~~~~~----------~~~~~~v~--~ 93 (279)
..||+|+| -|-+|..++..|..-|.-.+.++=. .. ....|++-.. ...++... .
T Consensus 43 ~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAG 121 (679)
T ss_pred cCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 46899999 5889999999998875433332211 01 1122321110 11122222 1
Q ss_pred cCcc----CCCCCcEEEecCCCc--hhh-hhHHHHHhCCCEEEEcCC-----------C--------CCCCCC-------
Q 023678 94 LTED----SFDGVDIALFSAGGS--ISK-KFGPIAVEKGSIVVDNSS-----------A--------FRMVEN------- 140 (279)
Q Consensus 94 ~d~~----~~~~~DvVf~a~g~~--~s~-~~~~~~~~aG~~VIDlS~-----------~--------~R~~~~------- 140 (279)
++.+ .+.++|+|+.|++.. .++ .+...+.+.|+.+|+.+. + |.++++
T Consensus 122 i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 201 (679)
T PRK14851 122 INADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQGMGFDDYFNIGGKMPEEQKY 201 (679)
T ss_pred CChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCCCCCHhHhccCCCCCChHHHH
Confidence 2221 247899999999863 233 344556788998886541 0 111111
Q ss_pred ---------CceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCcc
Q 023678 141 ---------VPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVT 190 (279)
Q Consensus 141 ---------vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~ 190 (279)
-|+-...+....+ ++..+++...+++|-.|...+-..+++-|.-...|.
T Consensus 202 ~~~~~g~~p~~~~~~~~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (679)
T PRK14851 202 LRFAMGLAPRPTHIKYMDLSKV-DLKGGKGPSLNIACQLCSGMAGTEAVRIILGKGGLR 259 (679)
T ss_pred HHHHhcCCCcchhhccCcHhhc-CCccCcCCCccHHHHhhhhhHHHHHHHHhhcCCeee
Confidence 0111122222333 233333356778888999888888888776555554
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.9 Score=40.66 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=27.4
Q ss_pred CCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcCCCCCCC
Q 023678 99 FDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 99 ~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS~~~R~~ 138 (279)
++++|+||.|++...++-+...+ ...|..+|+ +...++
T Consensus 106 i~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~--aalGfd 144 (307)
T cd01486 106 IKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN--AALGFD 144 (307)
T ss_pred HhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE--EEeccc
Confidence 46899999999999887555544 457888886 344444
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.29 E-value=1.4 Score=43.84 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=54.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce-eeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~-~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.+|+|+| .|..|...++.|..++. ++.. ...+..... +...+..+...+...+.+.++|+|+.+.|-.......
T Consensus 13 ~~v~V~G-~G~sG~aa~~~L~~~G~---~v~~-~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~ 87 (488)
T PRK03369 13 APVLVAG-AGVTGRAVLAALTRFGA---RPTV-CDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVL 87 (488)
T ss_pred CeEEEEc-CCHHHHHHHHHHHHCCC---EEEE-EcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHH
Confidence 5899999 69999999999987753 4333 232211100 0111111111111123456789999999887778888
Q ss_pred HHHHhCCCEEE
Q 023678 119 PIAVEKGSIVV 129 (279)
Q Consensus 119 ~~~~~aG~~VI 129 (279)
..+.++|+.|+
T Consensus 88 ~~a~~~gi~v~ 98 (488)
T PRK03369 88 AAAAAAGVPIW 98 (488)
T ss_pred HHHHHCCCcEe
Confidence 88999999988
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=87.29 E-value=0.89 Score=44.00 Aligned_cols=36 Identities=31% Similarity=0.378 Sum_probs=29.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS 77 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s 77 (279)
++|.+-|||||.|+-|++.|..+ ...++..+...++
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~--~~~kv~cLVRA~s 36 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDR--SDAKVICLVRAQS 36 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhc--CCCcEEEEEecCC
Confidence 36889999999999999998887 6688888865444
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=87.26 E-value=0.71 Score=40.62 Aligned_cols=31 Identities=10% Similarity=0.284 Sum_probs=25.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~---~v~~~ 34 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG---IVIAA 34 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45444
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.23 E-value=1.2 Score=38.64 Aligned_cols=30 Identities=13% Similarity=0.402 Sum_probs=25.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+|.|.||+|.+|+.+++.|.++++ ++..+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~---~V~~~ 31 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW---QVTAT 31 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC---EEEEE
Confidence 5799999999999999999998753 55555
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=87.22 E-value=1 Score=44.69 Aligned_cols=73 Identities=12% Similarity=0.161 Sum_probs=45.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC----CCceEEEEEeecCCC----Cceeee-----C-CceeEEeecCccCCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD----FPYRSIKMLASKRSA----GKQLSF-----Q-DKAYTVEELTEDSFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~----~p~~~l~~l~s~~s~----G~~~~~-----~-~~~~~v~~~d~~~~~~~Dv 104 (279)
..||+|.||+|.+|-.|+-+|+.-+ ...+.|+++...... |..+.. . ...+.+..-+.+++.++|+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~daDv 202 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAHV 202 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhCCCCE
Confidence 4899999999999999999987631 133456666321111 111111 1 1123444333467899999
Q ss_pred EEecCCC
Q 023678 105 ALFSAGG 111 (279)
Q Consensus 105 Vf~a~g~ 111 (279)
||.+.+.
T Consensus 203 vIitag~ 209 (452)
T cd05295 203 IVLLDDF 209 (452)
T ss_pred EEECCCC
Confidence 9999875
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=87.17 E-value=1.3 Score=42.40 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=51.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee----eCCceeEEeecCccCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS----FQDKAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~----~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
..+++|+| +|..++..++.+..- +|..++.+. +|.... ..+. ..+.++.+.+--.+...++|+|++|+++..
T Consensus 129 a~~l~iiG-aG~QA~~~l~a~~~v-r~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~ 205 (346)
T PRK07589 129 SRTMALIG-NGAQSEFQALAFKAL-LGIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT 205 (346)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHHh-CCceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 46799999 799999888876542 255555444 443211 1110 011122222211234578999999997543
Q ss_pred hhh-hHHHHHhCCCEEEEcCC
Q 023678 114 SKK-FGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 114 s~~-~~~~~~~aG~~VIDlS~ 133 (279)
... +-.+.++.|+.|+-..+
T Consensus 206 ~~Pvl~~~~lkpG~hV~aIGs 226 (346)
T PRK07589 206 NATILTDDMVEPGMHINAVGG 226 (346)
T ss_pred CCceecHHHcCCCcEEEecCC
Confidence 212 22356689998765544
|
|
| >PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=87.16 E-value=1 Score=43.77 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=51.1
Q ss_pred EECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCCCCceee----eCCce--------------------eEEe-ecC--
Q 023678 44 VVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLS----FQDKA--------------------YTVE-ELT-- 95 (279)
Q Consensus 44 IiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s~G~~~~----~~~~~--------------------~~v~-~~d-- 95 (279)
|+|+||-||.+-++.+.++ |+ ++++.++..+....... |.-+. ..+. ..+
T Consensus 1 ILGsTGSIG~qtLdVi~~~--~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l 78 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAH--PEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGL 78 (383)
T ss_pred CCccccHHHHHHHHHHHhC--ccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHH
Confidence 6899999999999998876 54 89998876554332111 10000 1111 000
Q ss_pred --ccCCCCCcEEEecCCCchhhhhHHHHHhCCCEE
Q 023678 96 --EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIV 128 (279)
Q Consensus 96 --~~~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~V 128 (279)
.....++|+|+.|.-....-+-.-.++++|..|
T Consensus 79 ~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~i 113 (383)
T PRK12464 79 IAVATHPGSDLVLSSVVGAAGLLPTIEALKAKKDI 113 (383)
T ss_pred HHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcE
Confidence 012246899999977666655556677888764
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.11 E-value=1.3 Score=38.84 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=23.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..+|.|.||+|.+|+.+++.|.++++
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~ 31 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS 31 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998754
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.08 E-value=1.2 Score=39.03 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=24.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+|.|.||+|.+|+.+++.|.++++ +++++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~---~v~~~ 32 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY---RVLAA 32 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 4699999999999999999998753 45444
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=87.00 E-value=1.4 Score=42.25 Aligned_cols=93 Identities=20% Similarity=0.190 Sum_probs=51.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE--eecC-c---cC--CCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV--EELT-E---DS--FDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v--~~~d-~---~~--~~~~DvVf~a~g 110 (279)
..+|.|+||+|-||...++++... ....++...|.+... ....-+.+..+ .+.+ . .. ..++|+||.|.+
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk~~--~~~~v~t~~s~e~~~-l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg 234 (347)
T KOG1198|consen 158 GKSVLVLGGSGGVGTAAIQLAKHA--GAIKVVTACSKEKLE-LVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVG 234 (347)
T ss_pred CCeEEEEeCCcHHHHHHHHHHHhc--CCcEEEEEcccchHH-HHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECCC
Confidence 478999999999999999988765 324444444433211 11111111111 1111 0 11 347999999999
Q ss_pred CchhhhhHHHHHhCCC-EEEEcCCC
Q 023678 111 GSISKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
..........+...|- .+|-+.++
T Consensus 235 ~~~~~~~~~~l~~~g~~~~i~~~~~ 259 (347)
T KOG1198|consen 235 GSTLTKSLSCLLKGGGGAYIGLVGD 259 (347)
T ss_pred CCccccchhhhccCCceEEEEeccc
Confidence 8655444544444432 24434443
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=86.99 E-value=1.4 Score=40.73 Aligned_cols=72 Identities=10% Similarity=0.124 Sum_probs=39.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeC-CceeEEeec---C--ccCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ-DKAYTVEEL---T--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~-~~~~~v~~~---d--~~~~~~~DvVf~a~g~ 111 (279)
..+|.|+|| |-+|+.++..|.+.+. .++..+ .|.. ..+.+... .....+..+ + .....++|+|+.|++.
T Consensus 125 ~k~vlvlGa-GGaarai~~aL~~~G~--~~i~I~-nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 125 GFRGLVIGA-GGTSRAAVYALASLGV--TDITVI-NRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred CceEEEEcC-cHHHHHHHHHHHHcCC--CeEEEE-eCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 368999995 8888999999987743 344444 3321 11122110 000111111 1 1223578999999998
Q ss_pred chh
Q 023678 112 SIS 114 (279)
Q Consensus 112 ~~s 114 (279)
+..
T Consensus 201 g~~ 203 (282)
T TIGR01809 201 DVP 203 (282)
T ss_pred CCC
Confidence 753
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.94 E-value=2.8 Score=37.05 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
...+.|.|++|.+|+.+.+.|.++++ +++.+
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~---~v~~~ 38 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA---DVALF 38 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 45899999999999999999998753 55544
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.89 E-value=0.82 Score=39.94 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=25.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~---~v~~~ 36 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA---RVAIT 36 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEe
Confidence 46899999999999999999998753 44444
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.83 E-value=4.5 Score=38.40 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=63.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEee-cC-ccCCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LT-EDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~-~d-~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.||.|-|-||.-|+--.+...+- ..+++.-.++...|+.+...+ +.+.+ +. ...-.++|+++.++|.....+.
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y---gt~iv~GV~Pgkgg~~v~~~G--vpvy~sv~ea~~~~~~D~avI~VPa~~v~da 104 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY---GTKMVGGVNPKKAGTTHLKHG--LPVFATVKEAKKATGADASVIYVPPPHAASA 104 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh---CCcEEEEECCCCCCceEecCC--ccccCCHHHHhcccCCCEEEEecCHHHHHHH
Confidence 69999999999999988888765 345666666665555443111 22221 11 0111248999999999999999
Q ss_pred HHHHHhCCCE-EEEcCCCCC
Q 023678 118 GPIAVEKGSI-VVDNSSAFR 136 (279)
Q Consensus 118 ~~~~~~aG~~-VIDlS~~~R 136 (279)
+.++.++|++ +|=.|+-|.
T Consensus 105 i~Ea~~aGI~~~ViiteGfp 124 (317)
T PTZ00187 105 IIEAIEAEIPLVVCITEGIP 124 (317)
T ss_pred HHHHHHcCCCEEEEECCCCc
Confidence 9999999995 344677663
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=86.82 E-value=1.4 Score=40.45 Aligned_cols=90 Identities=17% Similarity=0.085 Sum_probs=49.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ec-Cc----cCC--CCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--EL-TE----DSF--DGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~-d~----~~~--~~~DvVf~a~ 109 (279)
.-+|.|.||+|-+|..+++++...+ .+++...+....-..+...+.+..+. +. +. ... .++|++|.|+
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G---~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKG---CKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 4689999999999999999887664 34444432211000000011111111 10 00 011 3689999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcC
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS 132 (279)
|........ ..++.|.++|..+
T Consensus 216 G~~~~~~~~-~~l~~~G~iv~~G 237 (325)
T TIGR02825 216 GGEFSNTVI-GQMKKFGRIAICG 237 (325)
T ss_pred CHHHHHHHH-HHhCcCcEEEEec
Confidence 876554433 4456666666664
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.78 E-value=0.73 Score=40.40 Aligned_cols=30 Identities=7% Similarity=0.201 Sum_probs=25.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++|.|.||||.+|+.+++.|.++++ +++++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~---~Vi~~ 31 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA---RLYLA 31 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC---EEEEE
Confidence 5799999999999999999998754 44444
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.74 E-value=4.2 Score=40.33 Aligned_cols=88 Identities=17% Similarity=0.133 Sum_probs=55.2
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCC--------------cee-EE------eecC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD--------------KAY-TV------EELT 95 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~--------------~~~-~v------~~~d 95 (279)
.+..||+|.| .|.||+.+.+.|.+. ..+++.++.. .|--+...+ ..+ .+ ...+
T Consensus 230 l~g~rVaIqG-fGnVG~~~A~~L~~~---GakVVavsDs--~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~ 303 (445)
T PRK09414 230 FEGKRVVVSG-SGNVAIYAIEKAQQL---GAKVVTCSDS--SGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLE 303 (445)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHC---CCEEEEEEcC--CceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecC
Confidence 3468999999 799999999999875 4577777432 222111000 000 00 0112
Q ss_pred cc-CC-CCCcEEEecC-CCchhhhhHHHHHhCCCEEEE
Q 023678 96 ED-SF-DGVDIALFSA-GGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 96 ~~-~~-~~~DvVf~a~-g~~~s~~~~~~~~~aG~~VID 130 (279)
.+ .| .+|||++-|+ +..+..+.+.++.+.+|++|=
T Consensus 304 ~~~i~~~d~DVliPaAl~n~It~~~a~~i~~~~akiIv 341 (445)
T PRK09414 304 GGSPWSVPCDIALPCATQNELDEEDAKTLIANGVKAVA 341 (445)
T ss_pred CccccccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEE
Confidence 22 23 3799998886 556778888888878898883
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.73 E-value=0.86 Score=40.27 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~---~V~~~ 40 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA---EVILN 40 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC---EEEEE
Confidence 46899999999999999999998754 55444
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=86.72 E-value=3.2 Score=37.28 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=27.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s 74 (279)
+.+||+|.| .|-||+.+++.|.+. ..+++.++.
T Consensus 30 ~~~~v~I~G-~G~VG~~~a~~L~~~---g~~vv~v~D 62 (227)
T cd01076 30 AGARVAIQG-FGNVGSHAARFLHEA---GAKVVAVSD 62 (227)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHC---CCEEEEEEC
Confidence 468999999 899999999999875 467776653
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.67 E-value=2.9 Score=40.62 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=52.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-c----eeeeCCceeEEeecCccCCC-CCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-K----QLSFQDKAYTVEELTEDSFD-GVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~----~~~~~~~~~~v~~~d~~~~~-~~DvVf~a~g~~ 112 (279)
..+|.|+|+.| +|....+.|.++|+ ++... .++... . .+...+..+.........+. +.|+|+...+-.
T Consensus 5 ~k~v~v~G~g~-~G~s~a~~l~~~G~---~V~~~-d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~ 79 (447)
T PRK02472 5 NKKVLVLGLAK-SGYAAAKLLHKLGA---NVTVN-DGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIP 79 (447)
T ss_pred CCEEEEEeeCH-HHHHHHHHHHHCCC---EEEEE-cCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCC
Confidence 46899999876 99999999998754 43333 322211 0 01111111111111111123 389999988766
Q ss_pred hhhhhHHHHHhCCCEEEE
Q 023678 113 ISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VID 130 (279)
.......++.+.|+.|+.
T Consensus 80 ~~~~~~~~a~~~~i~v~~ 97 (447)
T PRK02472 80 YTNPMVEKALEKGIPIIT 97 (447)
T ss_pred CCCHHHHHHHHCCCcEEe
Confidence 667788889999999883
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=86.53 E-value=1.3 Score=42.27 Aligned_cols=78 Identities=5% Similarity=0.055 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCCCceEEEEEeecCCCC------ceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhhHHHH-
Q 023678 50 AVGQEFLSVLSDRDFPYRSIKMLASKRSAG------KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKFGPIA- 121 (279)
Q Consensus 50 ~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G------~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~~~~~- 121 (279)
|.|..+...|.+++| ++.++ +++... ..+...+ +.+.....+...++|+||+|+|... .++++..+
T Consensus 30 ~gG~~MA~~La~aG~---~V~v~-Dr~~~~l~~~~~~~l~~~G--i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~ 103 (342)
T PRK12557 30 YGGSRMAIEFAEAGH---DVVLA-EPNRSILSEELWKKVEDAG--VKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNIL 103 (342)
T ss_pred cCHHHHHHHHHhCCC---eEEEE-ECCHHHhhHHHHHHHHHCC--CEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHH
Confidence 458888888888765 34444 332210 0011111 2222211233568999999999887 55665444
Q ss_pred --HhCCCEEEEcCC
Q 023678 122 --VEKGSIVVDNSS 133 (279)
Q Consensus 122 --~~aG~~VIDlS~ 133 (279)
+..|..|||.|+
T Consensus 104 ~~L~~g~IVId~ST 117 (342)
T PRK12557 104 PHLPENAVICNTCT 117 (342)
T ss_pred hhCCCCCEEEEecC
Confidence 356889999876
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.47 E-value=1.3 Score=38.62 Aligned_cols=31 Identities=10% Similarity=0.320 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+++++.|.++++ +++.+
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~---~V~~~ 36 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA---TVILV 36 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC---EEEEE
Confidence 46899999999999999999998754 45444
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=86.42 E-value=2.3 Score=36.99 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=49.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ecCc------cCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTE------DSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d~------~~~~~~DvVf~a~g 110 (279)
..+|.|+|+.| +|+.+++++...+ .++..+.+....-..+...+....+. +.+. ....++|++|.|++
T Consensus 135 ~~~vli~g~~~-~G~~~~~~a~~~g---~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 210 (271)
T cd05188 135 GDTVLVLGAGG-VGLLAAQLAKAAG---ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG 210 (271)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHcC---CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCC
Confidence 46899999999 9999999887663 34444432211000010001111111 1110 01246899999998
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
.....+..-+.+..+..+++++..
T Consensus 211 ~~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 211 GPETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CHHHHHHHHHhcccCCEEEEEccC
Confidence 733333333445566667766653
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=1.5 Score=38.98 Aligned_cols=27 Identities=11% Similarity=0.227 Sum_probs=23.9
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD 63 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~ 63 (279)
.+..++.|.||+|.+|+++.+.|.+++
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G 31 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEK 31 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC
Confidence 445789999999999999999999874
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=86.40 E-value=3.6 Score=38.47 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=55.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe---------------ecCCCCceeee--------CCceeEEe---
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA---------------SKRSAGKQLSF--------QDKAYTVE--- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~---------------s~~s~G~~~~~--------~~~~~~v~--- 92 (279)
..||+|+|+ |-+|.+++..|..-|.- ++.++- +.+..|+.-.. .+..+.+.
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGVG--~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~ 103 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGIG--KFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP 103 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCCC--eEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 458999995 88899999999877443 333331 11122321110 01122232
Q ss_pred -ecCcc----CCCCCcEEEecCCCc--hhhhhH-HHHHhCCCEEEEcCCCCCCC
Q 023678 93 -ELTED----SFDGVDIALFSAGGS--ISKKFG-PIAVEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 93 -~~d~~----~~~~~DvVf~a~g~~--~s~~~~-~~~~~aG~~VIDlS~~~R~~ 138 (279)
.++.+ .+.++|+|+.|++.- .++.++ ..+.+.|+.+|.. +.+.+.
T Consensus 104 ~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~-~~~g~~ 156 (287)
T PRK08223 104 EGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTA-APLGMG 156 (287)
T ss_pred cccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEE-eccCCe
Confidence 12222 246899999999863 454444 4557889988864 345544
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.30 E-value=0.82 Score=41.15 Aligned_cols=31 Identities=10% Similarity=0.248 Sum_probs=25.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.+|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~---~V~~~ 36 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM---KLVLA 36 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998753 44444
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.27 E-value=3.1 Score=38.82 Aligned_cols=91 Identities=14% Similarity=0.065 Sum_probs=50.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEe--ecCc----cCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVE--ELTE----DSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~--~~d~----~~~~~~DvVf~a~g~ 111 (279)
.-+|.|+|+ |-+|...++++...+. .+++++. ++.....+. .-+.+..+. +.+. ....++|+||.|+|.
T Consensus 170 g~~VlV~G~-G~vG~~aiqlak~~G~--~~Vi~~~-~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 170 GKRVFVSGV-GPIGCLIVAAVKTLGA--AEIVCAD-VSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH 245 (343)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCC--cEEEEEe-CCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence 468999996 9999999998876632 2333332 221100000 011111111 1110 111248999999998
Q ss_pred chhhhhHHHHHhCCCEEEEcCC
Q 023678 112 SISKKFGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~ 133 (279)
..+.+.+-++++.|-++|..+.
T Consensus 246 ~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 246 PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred HHHHHHHHHHhhcCCEEEEEcc
Confidence 6555555566777777776653
|
|
| >COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=86.23 E-value=1.2 Score=42.93 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=30.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR 76 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~ 76 (279)
++|+.|+|+||-+|.+-|+.+.+++ ..++++.++..+
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p-~~f~vval~ag~ 37 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNP-DKFEVVALAAGK 37 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCC-CcEEEEEEecCC
Confidence 4689999999999999999998873 337888886544
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=86.23 E-value=5 Score=38.41 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=54.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe----ecC-----------CCCceeee--------CCceeEEe---
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKR-----------SAGKQLSF--------QDKAYTVE--- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~----s~~-----------s~G~~~~~--------~~~~~~v~--- 92 (279)
..||.|+|+ |-+|.++++.|...|...+ .++. ..+ ..|++-.. ....+.+.
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg~i--~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVGHI--TIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCeE--EEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 468999995 8889999999988755433 3331 111 12221110 01122222
Q ss_pred -ecCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEc
Q 023678 93 -ELTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDN 131 (279)
Q Consensus 93 -~~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDl 131 (279)
.++. +.+.++|+|+.|++...++.++..+ .+.|+.+|..
T Consensus 105 ~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 105 RRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred eecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 2222 2247899999999998888766555 5678887743
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.12 E-value=2 Score=44.47 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+.+++.|.++++ +++++
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga---~Vvl~ 452 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGA---CVVLA 452 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC---EEEEE
Confidence 36899999999999999999998753 45444
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=86.12 E-value=2.1 Score=40.84 Aligned_cols=89 Identities=13% Similarity=0.231 Sum_probs=53.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..+|+||| .|.+|+.+.+.|...++ ++.... ++....... ..+ ..+.++ .+.+..+|+|+.++|...++..
T Consensus 16 gKtVGIIG-~GsIG~amA~nL~d~G~---~ViV~~-r~~~s~~~A~~~G--~~v~sl-~Eaak~ADVV~llLPd~~t~~V 87 (335)
T PRK13403 16 GKTVAVIG-YGSQGHAQAQNLRDSGV---EVVVGV-RPGKSFEVAKADG--FEVMSV-SEAVRTAQVVQMLLPDEQQAHV 87 (335)
T ss_pred cCEEEEEe-EcHHHHHHHHHHHHCcC---EEEEEE-CcchhhHHHHHcC--CEECCH-HHHHhcCCEEEEeCCChHHHHH
Confidence 46899999 79999999999987654 444443 221111100 111 122222 2345689999999998666655
Q ss_pred HH-HH---HhCCCEEEEcCCCCC
Q 023678 118 GP-IA---VEKGSIVVDNSSAFR 136 (279)
Q Consensus 118 ~~-~~---~~aG~~VIDlS~~~R 136 (279)
.. .. ++.|+.++ .|.-|-
T Consensus 88 ~~~eil~~MK~GaiL~-f~hgfn 109 (335)
T PRK13403 88 YKAEVEENLREGQMLL-FSHGFN 109 (335)
T ss_pred HHHHHHhcCCCCCEEE-ECCCcc
Confidence 43 22 24566554 676663
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.10 E-value=3.1 Score=38.85 Aligned_cols=111 Identities=21% Similarity=0.328 Sum_probs=67.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..++.|||.+..||+=|..+|.+. ...+....|+. + ++ .+....+|+++.|.|-..- +-
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~---naTVtvcHs~T---~------------~l-~~~~k~ADIvv~AvG~p~~--i~ 214 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNA---NATVTVCHSRT---K------------DL-ASITKNADIVVVAVGKPHF--IK 214 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhC---CCEEEEEcCCC---C------------CH-HHHhhhCCEEEEecCCccc--cc
Confidence 579999999999999999999874 33433332211 1 00 1223678999999885311 11
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC---CChHHHHHH
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP---NCSTIICLM 178 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP---gC~tt~l~l 178 (279)
....+.|+.|||..-. |.++. -.+-.|+.+..+.. ...+--.| |-.|++|++
T Consensus 215 ~d~vk~gavVIDVGin-rv~~~--kl~GDVdf~~v~~~-----a~~iTPVPGGVGPmTvamLl 269 (283)
T COG0190 215 ADMVKPGAVVIDVGIN-RVNDG--KLVGDVDFDSVKEK-----ASAITPVPGGVGPMTVAMLL 269 (283)
T ss_pred cccccCCCEEEecCCc-cccCC--ceEeeccHHHHHHh-----hcccCCCCCccCHHHHHHHH
Confidence 2445789999998654 44331 23456676655531 23344566 445555554
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=86.05 E-value=6.7 Score=34.45 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCce
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR 67 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~ 67 (279)
..||+|+|+ |-+|..+...|...|+..+
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gvg~i 48 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGIGKL 48 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEE
Confidence 468999996 8899999999998865433
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=86.00 E-value=1.7 Score=40.06 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=49.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CCceeEEe--ecCc-c---CC--CCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVE--ELTE-D---SF--DGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~~~~~v~--~~d~-~---~~--~~~DvVf~a~g 110 (279)
-+|.|.||+|-+|..+++++...+. .+++.+.+.......+.. -+.+..+. +.+. + .+ .++|++|.|++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~--~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g 233 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGC--SRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVG 233 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCC
Confidence 5899999999999999988776532 144444332111011100 11111111 1110 0 01 47999999998
Q ss_pred CchhhhhHHHHHhCCCEEEEcC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS 132 (279)
.....+.. ..+..|.++|+.+
T Consensus 234 ~~~~~~~~-~~l~~~G~iv~~G 254 (345)
T cd08293 234 GEISDTVI-SQMNENSHIILCG 254 (345)
T ss_pred cHHHHHHH-HHhccCCEEEEEe
Confidence 76554443 4556666667664
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 279 | ||||
| 2qz9_A | 336 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 7e-45 | ||
| 2r00_C | 336 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 1e-43 | ||
| 2yv3_A | 331 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 2e-41 | ||
| 2gyy_A | 366 | Structure Of Aspartate Semialdehyde Dehydrogenase ( | 2e-40 | ||
| 3vos_A | 362 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 4e-28 | ||
| 3tz6_A | 344 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 4e-28 | ||
| 1ys4_A | 354 | Structure Of Aspartate-Semialdehyde Dehydrogenase F | 5e-16 | ||
| 2hjs_A | 340 | The Structure Of A Probable Aspartate-Semialdehyde | 8e-12 | ||
| 2ep5_A | 350 | Structural Study Of Project Id St1242 From Sulfolob | 1e-09 | ||
| 1nwc_A | 371 | Crystal Structure Of Aspartate-Semialdehyde Dehydro | 3e-05 | ||
| 1ps8_A | 371 | Crystal Structure Of The R270k Mutant Of Aspartate | 3e-05 | ||
| 1pqu_A | 371 | Crystal Structure Of The H277n Mutant Of Aspartate | 3e-05 | ||
| 3hsk_A | 381 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 5e-05 | ||
| 1pr3_A | 371 | Crystal Structure Of The R103k Mutant Of Aspartate | 8e-05 | ||
| 1oza_A | 371 | Crystal Structure Of The R103l Mutant Of Aspartate | 3e-04 | ||
| 4dpk_A | 359 | Structure Of Malonyl-coenzyme A Reductase From Cren | 3e-04 | ||
| 1mc4_A | 370 | Crystal Structure Of Aspartate-Semialdehyde Dehydro | 3e-04 | ||
| 1brm_A | 367 | Aspartate Beta-Semialdehyde Dehydrogenase From Esch | 6e-04 | ||
| 1t4b_A | 367 | 1.6 Angstrom Structure Of Esherichia Coli Aspartate | 6e-04 | ||
| 3uw3_A | 377 | Crystal Structure Of An Aspartate-Semialdehyde Dehy | 7e-04 |
| >pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase Ii From Vibrio Cholerae Length = 336 | Back alignment and structure |
|
| >pdb|2R00|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase Ii Complexed With Asa From Vibrio Cholerae Length = 336 | Back alignment and structure |
|
| >pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase From Thermus Thermophilus Hb8 Length = 331 | Back alignment and structure |
|
| >pdb|2GYY|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh) From Streptococcus Pneumoniae Length = 366 | Back alignment and structure |
|
| >pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase Complexed With Glycerol And Sulfate From Mycobacterium Tuberculosis H37rv Length = 362 | Back alignment and structure |
|
| >pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase Complexed With Inhibitor Smcs (Cys) And Phosphate From Mycobacterium Tuberculosis H37rv Length = 344 | Back alignment and structure |
|
| >pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From Methanococcus Jannaschii Length = 354 | Back alignment and structure |
|
| >pdb|2HJS|A Chain A, The Structure Of A Probable Aspartate-Semialdehyde Dehydrogenase From Pseudomonas Aeruginosa Length = 340 | Back alignment and structure |
|
| >pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus Tokodaii Strain7 Length = 350 | Back alignment and structure |
|
| >pdb|1NWC|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase From Haemophilus Influenzae Length = 371 | Back alignment and structure |
|
| >pdb|1PS8|A Chain A, Crystal Structure Of The R270k Mutant Of Aspartate Semialdehyde Dehydrogenase From Haemophilus Influenzae Length = 371 | Back alignment and structure |
|
| >pdb|1PQU|A Chain A, Crystal Structure Of The H277n Mutant Of Aspartate Semialdehyde Dehydrogenase From Haemophilus Influenzae Bound With Nadp, S-Methyl Cysteine Sulfoxide And Cacodylate Length = 371 | Back alignment and structure |
|
| >pdb|3HSK|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase With Nadp From Candida Albicans Length = 381 | Back alignment and structure |
|
| >pdb|1PR3|A Chain A, Crystal Structure Of The R103k Mutant Of Aspartate Semialdehyde Dehydrogenase From Haemophilus Influenzae Length = 371 | Back alignment and structure |
|
| >pdb|1OZA|A Chain A, Crystal Structure Of The R103l Mutant Of Aspartate Semialdehyde Dehydrogenase From Haemophilus Influenzae Length = 371 | Back alignment and structure |
|
| >pdb|4DPK|A Chain A, Structure Of Malonyl-coenzyme A Reductase From Crenarchaeota Length = 359 | Back alignment and structure |
|
| >pdb|1MC4|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase From Vibrio Cholerae El Tor Length = 370 | Back alignment and structure |
|
| >pdb|1BRM|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia Coli Length = 367 | Back alignment and structure |
|
| >pdb|1T4B|A Chain A, 1.6 Angstrom Structure Of Esherichia Coli Aspartate- Semialdehyde Dehydrogenase. Length = 367 | Back alignment and structure |
|
| >pdb|3UW3|A Chain A, Crystal Structure Of An Aspartate-Semialdehyde Dehydrogenase From Burkholderia Thailandensis Length = 377 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 279 | |||
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 1e-136 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 1e-133 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 1e-133 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 1e-131 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 1e-129 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 1e-113 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 1e-109 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 1e-109 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 4e-88 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 1e-84 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 3e-82 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 9e-14 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 1e-09 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 1e-07 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 2e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 4e-06 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 7e-06 |
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} Length = 331 | Back alignment and structure |
|---|
Score = 386 bits (994), Expect = e-136
Identities = 109/223 (48%), Positives = 140/223 (62%), Gaps = 7/223 (3%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TGAVG+E L VL R+FP +++ AS RSAG +L+F+ + VE L E
Sbjct: 3 VAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGPL-P 61
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
VD+ L SAGG IS+ + E G++VVDNSSA+R VPLV+PEVN E + +
Sbjct: 62 VDLVLASAGGGISRAKALVWAEGGALVVDNSSAWRYEPWVPLVVPEVNREKIFQHR---- 117
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
+IANPNC+T I MA PLHR + R++V+TYQAASGAGA AMEEL +T L G
Sbjct: 118 --GIIANPNCTTAILAMALWPLHRAFQAKRVIVATYQAASGAGAKAMEELLTETHRFLHG 175
Query: 222 KPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
+ P + F+ FN+ H ENGY EEMK+V ET KI+
Sbjct: 176 EAPKAEAFAHPLPFNVIPHIDAFQENGYTREEMKVVWETHKIF 218
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* Length = 336 | Back alignment and structure |
|---|
Score = 380 bits (978), Expect = e-133
Identities = 106/223 (47%), Positives = 144/223 (64%), Gaps = 4/223 (1%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VA+ G TGAVG+ L VL +R+FP + +LAS+RS GK F K V+ + E +
Sbjct: 6 VAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQ 65
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
V IALFSAGG +S K+ PIA E G +V+DN+S FR ++PLV+PEVNPEA++ +
Sbjct: 66 VHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR---- 121
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
+IANPNCSTI L+A P++ + R+ V+TYQ+ SGAG A ++EL QT ++L G
Sbjct: 122 NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNG 181
Query: 222 KPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
P FSQQ AFN ++NGY +EEMKMV ET+KI+
Sbjct: 182 YPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIF 224
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 Length = 340 | Back alignment and structure |
|---|
Score = 379 bits (975), Expect = e-133
Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 8/233 (3%)
Query: 32 RMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV 91
MS +VAVVG TG+VG+ + +L +RDFP + +LAS SAG+++ F + + V
Sbjct: 2 HMS---QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRV 58
Query: 92 EELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPE 151
++ F V +A F+A +S+ A G V+D S A P V+ VN E
Sbjct: 59 GDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEP-SVAPPVMVSVNAE 117
Query: 152 AMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEEL 211
++ L+++P PL ++ ++ + S G ++EL
Sbjct: 118 RLASQA----APFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKEL 173
Query: 212 ELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
QT E+L +P ++F +Q AFNL + V G++ E ++ E + +
Sbjct: 174 ARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALL 226
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A Length = 366 | Back alignment and structure |
|---|
Score = 374 bits (964), Expect = e-131
Identities = 108/243 (44%), Positives = 140/243 (57%), Gaps = 22/243 (9%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE 92
M Y +VAVVG TGAVG + + +L + P I+ LAS RSAGK L F+D+ T+E
Sbjct: 1 MGY-----TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIE 55
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
E TE +F+GVDIALFSAG S S K+ P AV+ G +VVDN+S FR +VPLV+PEVN A
Sbjct: 56 ETTETAFEGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHA 115
Query: 153 MSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELE 212
+ +IA PNCSTI ++A P+ ++ + R++VSTYQA SGAG A+ E +
Sbjct: 116 LDAHN------GIIACPNCSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQ 169
Query: 213 LQTREVLEGK-----------PPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETR 261
+ REVL P AFN +N Y EEMKM KET+
Sbjct: 170 RELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETK 229
Query: 262 KIW 264
KI
Sbjct: 230 KIM 232
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A Length = 344 | Back alignment and structure |
|---|
Score = 369 bits (949), Expect = e-129
Identities = 91/239 (38%), Positives = 134/239 (56%), Gaps = 17/239 (7%)
Query: 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS 98
S+ +VG TG VGQ ++L +RDFP +++ AS RS G++L+F+ + VE+
Sbjct: 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETAD 60
Query: 99 FDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158
G+DIALFSAG ++SK P G V+DNSSA+R +VPLV+ EVN E + +
Sbjct: 61 PSGLDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRR- 119
Query: 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREV 218
KG +IANPNC+T+ + LH A++ R+VVS+YQA SG+G A + EL Q R V
Sbjct: 120 --PKG-IIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAV 176
Query: 219 LEGKP-----------PTCKIFSQQYAFNLFSHNAPVLENGYNE--EEMKMVKETRKIW 264
+ G P + AFN+ ++++G E E+ K+ E+RKI
Sbjct: 177 IGGAEQLVYDGGALEFPPPNTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKIL 235
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} Length = 377 | Back alignment and structure |
|---|
Score = 329 bits (845), Expect = e-113
Identities = 65/256 (25%), Positives = 95/256 (37%), Gaps = 31/256 (12%)
Query: 38 SAPSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE 96
+ +V +VG G VG + + + DF ++ + GK SF T+++ T
Sbjct: 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNETTLKDATS 62
Query: 97 -DSFDGVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAM 153
D D+ + GG + P G +D +S+ RM ++ +++ VN +
Sbjct: 63 IDDLKKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVI 122
Query: 154 SGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELEL 213
V G NC+ + LMA L R V M TYQAASGAGA M EL
Sbjct: 123 KDALVN-GTK-NFIGGNCTVSLMLMALGGLFRENLVDWMTAMTYQAASGAGAQNMRELLA 180
Query: 214 QTREV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248
Q + + G F A +L L NG
Sbjct: 181 QMGTLNGAVAAQLADPASAILDIDRRVLAAMNGDAMPTSQFGVPLAGSLIPWIDKDLGNG 240
Query: 249 YNEEEMKMVKETRKIW 264
+ EE K ET KI
Sbjct: 241 MSREEWKGGAETNKIL 256
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A Length = 370 | Back alignment and structure |
|---|
Score = 320 bits (823), Expect = e-109
Identities = 62/253 (24%), Positives = 95/253 (37%), Gaps = 33/253 (13%)
Query: 42 VAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSF 99
V +VG G VG + ++ +RDF ++ + +F A + + +S
Sbjct: 3 VGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESL 62
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157
+D + GGS ++K P + G +D +S RM + + + VN + I
Sbjct: 63 KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQ---IL 119
Query: 158 VGMGKGA-LIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTR 216
G+ G NC+ + LMA L+ R V M TYQAASGAGA M EL Q
Sbjct: 120 HGIHHGTKTFVGGNCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMG 179
Query: 217 EV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNE 251
+ + F A +L +NG ++
Sbjct: 180 VINDAVSSELANPASSILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSK 239
Query: 252 EEMKMVKETRKIW 264
EE K E KI
Sbjct: 240 EEWKAGVEANKIL 252
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* Length = 367 | Back alignment and structure |
|---|
Score = 319 bits (819), Expect = e-109
Identities = 60/255 (23%), Positives = 98/255 (38%), Gaps = 33/255 (12%)
Query: 40 PSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-D 97
+V +G G VG + ++ +RDF ++ + SF T+++ + +
Sbjct: 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLE 61
Query: 98 SFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155
+ +DI + GG + + P E G +D +S+ RM ++ +++ VN +
Sbjct: 62 ALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDV--- 118
Query: 156 IKVGMGKG-ALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQ 214
I G+ G NC+ + LM+ L V + V+TYQAASG GA M EL Q
Sbjct: 119 ITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQ 178
Query: 215 TREV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249
+ F A +L L+NG
Sbjct: 179 MGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQ 238
Query: 250 NEEEMKMVKETRKIW 264
+ EE K ET KI
Sbjct: 239 SREEWKGQAETNKIL 253
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} Length = 350 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 4e-88
Identities = 60/256 (23%), Positives = 107/256 (41%), Gaps = 44/256 (17%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ------------LSFQDKAY 89
V+++G TG VGQ+ + +L+ + +K+ AS GK+ + + +
Sbjct: 7 VSLLGSTGMVGQKMVKMLAKHPY-LELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDL 65
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVN 149
+ + VD+ L + +++ V+ G IVV N+S FRM +VPL+ PE+N
Sbjct: 66 PIVSTNYEDHKDVDVVLSALPNELAESIELELVKNGKIVVSNASPFRMDPDVPLINPEIN 125
Query: 150 PEAMSGIKV----GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGA 205
E + +K KG L+ NPNC+ I M PL A ++++++T QA SGAG
Sbjct: 126 WEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKPLIEIATKSKIIITTLQAVSGAGY 185
Query: 206 AAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMV--KETRKI 263
+ + + N+ + E+ +E K+ E +I
Sbjct: 186 NGISFMAI--------------------EGNIIPYI-KGEEDKIAKELTKLNGKLENNQI 224
Query: 264 WVSFKMNFFVSPCSCN 279
N + +
Sbjct: 225 ---IPANLDST-VTSI 236
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} Length = 354 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 1e-84
Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 59/277 (21%)
Query: 27 MFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQ 85
M +M V V+G TG+VGQ F+ +L+D P + L AS+RSAGK+
Sbjct: 1 MSKGEKMKI-----KVGVLGATGSVGQRFVQLLADH--PMFELTALAASERSAGKKYKDA 53
Query: 86 DKAYTVEELTE--------------DSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDN 131
+ ++ E + F+ VDI + ++KKF P ++G ++ N
Sbjct: 54 CYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSN 113
Query: 132 SSAFRMVENVPLVIPEVNPEAMSGIKVGMG----KGALIANPNCSTIICLMAATPLHRRA 187
+SA+RM E+VPLVIPEVN + + I++ GA+I NPNCSTI ++ P+ +
Sbjct: 114 ASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKF 173
Query: 188 KVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247
+ + ++T QA SGAG + + + NL
Sbjct: 174 GLEAVFIATMQAVSGAGYNGVPSMAI--------------------LDNLIPF------- 206
Query: 248 GYNEEEMKMVKETRKIWVSFKMNFFVSP-----CSCN 279
EE KM E+ K+ + K SCN
Sbjct: 207 -IKNEEEKMQTESLKLLGTLKDGKVELANFKISASCN 242
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} Length = 381 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 3e-82
Identities = 67/270 (24%), Positives = 104/270 (38%), Gaps = 58/270 (21%)
Query: 20 NKPRTKPMFTR-VRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRS 77
+ + + R MS V+G TG+VGQ F+ +LS P I L AS RS
Sbjct: 3 HHHHSSGLVPRGSHMS----VKKAGVLGATGSVGQRFILLLSKH--PEFEIHALGASSRS 56
Query: 78 AGKQLSF------------QDKAYTVEELTED-SFDGVDIALFSAGGSISKKFGPIAVEK 124
AGK+ ++ V+E + +F D+ ++ VE
Sbjct: 57 AGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDVVFSGLDADVAGDIEKSFVEA 116
Query: 125 GSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV---------GMGKGALIANPNCSTII 175
G VV N+ +R ++VPLV+P VNPE + ++ G G +I NCST
Sbjct: 117 GLAVVSNAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNCSTAG 176
Query: 176 CLMAATPLHRR-AKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYA 234
+ PL + + + +T QA SGAG + +
Sbjct: 177 LVAPLKPLVEKFGPIDALTTTTLQAISGAGFSPG-------------------VSGMDIL 217
Query: 235 FNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
N+ + + EE K+ ET+KI
Sbjct: 218 DNIVPY--------ISGEEDKLEWETKKIL 239
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 Length = 312 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 9e-14
Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 31/242 (12%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA--SKRSAG----KQLSFQDKAYTVEEL 94
VA++G +G +G + + + R+ Y + + S G +++ VE L
Sbjct: 6 KVAIIG-SGNIGTDLMIKVL-RNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGL 63
Query: 95 TE-DSFDGVDIALF--SAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPE 151
+ F +D SA + + + G ++D + A P +P VN E
Sbjct: 64 IKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIG----PYCVPVVNLE 119
Query: 152 AMSGIK-VGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEE 210
G V M + +TI + A + + + + + ++A A ++E
Sbjct: 120 EHLGKLNVNM-----VTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDE 174
Query: 211 LELQTREVLE--GKPPTCK---IFSQQYAFNLFSHNAPVLENGYNEEE-----MKMVKET 260
T + +E G K I + + VL ++ +MV+
Sbjct: 175 FTETTSKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAAADQAAVAASVAEMVQAV 234
Query: 261 RK 262
+
Sbjct: 235 QA 236
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} Length = 345 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 41/200 (20%), Positives = 73/200 (36%), Gaps = 43/200 (21%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--------FQDKAYTVE 92
++++VG +G G EFL + PY +K + S+R AG+ + + +
Sbjct: 6 TLSIVGASGYAGGEFLRLALSH--PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFV-- 61
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFR---------------- 136
+ + DI + + + + ++VD S+ FR
Sbjct: 62 --PPEKLEPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYGEHPR 119
Query: 137 --MVENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVTR 191
++ +PE+ EA+ KGA IA C+ L+ PL K T
Sbjct: 120 PDLLGRFVYAVPELYREAL--------KGADWIAGAGCNATATLLGLYPLLKAGVLKPTP 171
Query: 192 MVVSTYQAASGAGAAAMEEL 211
+ V+ + S GA A
Sbjct: 172 IFVTLLISTSAGGAEASPAS 191
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A Length = 359 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 38/197 (19%), Positives = 72/197 (36%), Gaps = 45/197 (22%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAY------TVEELT 95
+ ++G +G G E + +L++ P+ + ++ + R AG+ + T+ +
Sbjct: 19 IGLLGASGYTGAEIVRLLANH--PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK 76
Query: 96 EDSFDGVDIALFSA---GGSISKKFGPIAVEKGSIVVDNSSAFR---------------- 136
+ F VD F G +++ + +VD S+ FR
Sbjct: 77 DADFSTVDAV-FCCLPHG--TTQEIIK-ELPTALKIVDLSADFRLRNIAEYEEWYGQPHK 132
Query: 137 ---MVENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVT 190
+ + V + E+ E + K A L+ANP C + PL K
Sbjct: 133 AVELQKEVVYGLTEILREDI--------KKARLVANPGCYPTTIQLPLVPLLKANLIKHE 184
Query: 191 RMVVSTYQAASGAGAAA 207
+++ SGAG A
Sbjct: 185 NIIIDAKSGVSGAGRGA 201
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A Length = 337 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 44/201 (21%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLS--------FQDKAY 89
+ +VG +G G E ++ ++ P+ +I L AGK +S +
Sbjct: 6 NTLIVGASGYAGAELVTYVNRH--PHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPL 63
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFR------------- 136
+ GVD+ + +S P +E G +V D S AFR
Sbjct: 64 QPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGF 123
Query: 137 ------MVENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPLHRRAKV 189
++E + E + K A LIA P C +A PL +
Sbjct: 124 THQYPELLEQAAYGLAEWCGNKL--------KEANLIAVPGCYPTAAQLALKPLIDADLL 175
Query: 190 ---TRMVVSTYQAASGAGAAA 207
V++ SGAG A
Sbjct: 176 DLNQWPVINATSGVSGAGRKA 196
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 4e-06
Identities = 56/389 (14%), Positives = 107/389 (27%), Gaps = 146/389 (37%)
Query: 18 PANKPRTKPMFTRVRMSYQE--SAPSVAVVGVTGAVGQEFL--SVLSDRD----FPYR-- 67
N R +P + ++R + E A +V + GV G+ G+ ++ V ++
Sbjct: 128 KYNVSRLQP-YLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKIF 185
Query: 68 ------------SIKMLAS----------------------KRSAGKQLS--FQDKAYT- 90
++ML S +L + K Y
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 91 -------VEELTE-DSFD-GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENV 141
V+ ++F+ I L + ++ A + +S E
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA-ATTTHISLDHHSMTLTPDEVK 304
Query: 142 PLV----------IPE----VNPEAMSGIKVGMGKGALIANPNC-------------STI 174
L+ +P NP +S I I + +TI
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSII------AESIRDGLATWDNWKHVNCDKLTTI 358
Query: 175 I--CLMAATP-LHRR-----------AKVTRMVVSTYQAASGAGAAAMEEL-ELQTREVL 219
I L P +R+ A + +++S + M + +L ++
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV-IKSDVMVVVNKLHKYSLV 417
Query: 220 E--GKPPTCKIFS--------------------QQYAFNL-FSHN--APVLENGY----- 249
E K T I S Y F + P + Y
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 250 -----NEEEMKMVKETRKIWVSFKMNFFV 273
N E + + R +++ F+ F+
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFR---FL 503
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A Length = 352 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 4e-06
Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 42/201 (20%)
Query: 41 SVAVVGVTGAVGQEFLSVLS---DRDFPYRSIKMLASKRSAGKQLS--------FQDKAY 89
VAV G +G G E L +L I L + SAG L +
Sbjct: 11 KVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHR-- 68
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPL------ 143
VE G D + S + ++++D + FR+ + +
Sbjct: 69 VVEPTEAAVLGGHDAVFLALPHGHSAVLAQ-QLSPETLIIDCGADFRL-TDAAVWERFYG 126
Query: 144 -------V--IPEV--NPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPLHRRAKV-T 190
+PE+ + + +G IA P C L+A P +
Sbjct: 127 SSHAGSWPYGLPELPGARDQL--------RGTRRIAVPGCYPTAALLALFPALAADLIEP 178
Query: 191 RMVVSTYQAASGAGAAAMEEL 211
+ V SGAG AA +L
Sbjct: 179 AVTVVAVSGTSGAGRAATTDL 199
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Length = 351 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 7e-06
Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 46/200 (23%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-----FQDKAYTVEELTE 96
++G TG G E + +L + P I L+S+ AGK+L + + E E
Sbjct: 16 AGIIGATGYTGLELVRLLKNH--PEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE 73
Query: 97 DSFDGVDIALFS----AGGSISKKFGPIAVEKGSIVVDNSSAFRM--------------- 137
D+ + A + ++ KG ++D + FR
Sbjct: 74 KVSKNCDVLFTALPAGASYDLVREL------KGVKIIDLGADFRFDDPGVYREWYGKELS 127
Query: 138 -VENVPLV--IPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVTR 191
EN+ V +PE++ E + K A ++ NP C ++A P H
Sbjct: 128 GYENIKRVYGLPELHREEI--------KNAQVVGNPGCYPTSVILALAPALKHNLVDPET 179
Query: 192 MVVSTYQAASGAGAAAMEEL 211
++V SGAG +
Sbjct: 180 ILVDAKSGVSGAGRKEKVDY 199
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 279 | |||
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 100.0 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 100.0 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 100.0 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 100.0 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 100.0 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 100.0 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 100.0 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 100.0 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 100.0 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 100.0 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 100.0 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 100.0 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 100.0 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 100.0 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 100.0 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 100.0 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 100.0 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 100.0 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 100.0 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 100.0 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 100.0 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 100.0 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 99.97 | |
| 1obf_O | 335 | Glyceraldehyde 3-phosphate dehydrogenase; glycolyt | 99.97 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 99.97 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 99.97 | |
| 2b4r_O | 345 | Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st | 99.97 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 99.97 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 99.97 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 99.97 | |
| 3lvf_P | 338 | GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase | 99.97 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 99.97 | |
| 2ep7_A | 342 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o | 99.97 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 99.97 | |
| 3v1y_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 99.96 | |
| 3doc_A | 335 | Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, | 99.96 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 99.96 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 99.96 | |
| 3pym_A | 332 | GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase | 99.96 | |
| 4dib_A | 345 | GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n | 99.96 | |
| 3hja_A | 356 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n | 99.96 | |
| 3ids_C | 359 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g | 99.96 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 99.9 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 99.89 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 99.86 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.58 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 98.57 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.45 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.36 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 98.31 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.31 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 98.22 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.18 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.15 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.15 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 98.04 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.04 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.04 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.04 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 98.02 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 98.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.99 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.98 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.98 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.98 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.96 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 97.95 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.94 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.93 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.92 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.9 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.9 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.9 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.89 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.89 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.87 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.86 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.86 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 97.82 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.82 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.82 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.81 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.81 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.8 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.79 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.79 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.78 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.77 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.76 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 97.75 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.75 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.75 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.73 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.73 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.72 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 97.7 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.7 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.69 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.69 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 97.68 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.68 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.66 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 97.66 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 97.66 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 97.66 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.65 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 97.65 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.64 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 97.64 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.64 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.61 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.61 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.59 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.58 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.56 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 97.55 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 97.55 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.54 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 97.52 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.51 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 97.51 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.51 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.5 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 97.5 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 97.49 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.48 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.47 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 97.46 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 97.45 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 97.44 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 97.44 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 97.43 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.43 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 97.41 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.4 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 97.39 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 97.39 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 97.39 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.39 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 97.38 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.37 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.36 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.36 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.35 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.34 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.33 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.33 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 97.32 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.32 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 97.31 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.31 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 97.3 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.3 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.29 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.29 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.28 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 97.28 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.27 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 97.26 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.26 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.25 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 97.25 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.25 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.24 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 97.23 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 97.22 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 97.21 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 97.21 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.2 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 97.2 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.2 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.19 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.19 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 97.19 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.18 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.17 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 97.16 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.15 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 97.15 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 97.13 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 97.13 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 97.12 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 97.12 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.12 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 97.12 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 97.11 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.11 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.1 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 97.07 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.07 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.06 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 97.06 | |
| 3a06_A | 376 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M | 97.05 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 97.03 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.02 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 97.02 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.01 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 97.01 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 97.01 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 97.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 97.0 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 96.99 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.98 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.98 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 96.96 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 96.93 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.91 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 96.91 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 96.91 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 96.9 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.9 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 96.85 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.83 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 96.81 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.8 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.78 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 96.77 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 96.77 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 96.75 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 96.74 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 96.74 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.72 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 96.72 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.7 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 96.7 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 96.7 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 96.7 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.69 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 96.68 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 96.68 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 96.66 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 96.66 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 96.66 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 96.65 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 96.64 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.62 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 96.61 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 96.61 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.58 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 96.58 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.57 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 96.57 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 96.56 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 96.53 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 96.53 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 96.51 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.49 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 96.47 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 96.47 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 96.46 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 96.45 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 96.45 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 96.43 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 96.42 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 96.42 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 96.4 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 96.39 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 96.38 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 96.37 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 96.36 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.32 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 96.29 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.29 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 96.29 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 96.29 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 96.28 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 96.23 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 96.2 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 96.2 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 96.19 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.19 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 96.15 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 96.12 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.12 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 96.12 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 96.1 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 96.1 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.09 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.09 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 96.08 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.07 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 96.05 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 95.97 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 95.96 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 95.96 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 95.93 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 95.92 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 95.9 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 95.88 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 95.86 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 95.86 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 95.86 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 95.85 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 94.83 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 95.82 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 95.8 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 95.77 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 95.71 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 95.7 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 95.67 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 95.64 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 95.62 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 95.6 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.58 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 95.57 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 95.55 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.53 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 95.52 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 95.51 | |
| 3mwd_B | 334 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 95.51 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 95.5 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.48 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.46 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 95.45 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.44 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 95.44 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 95.42 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.42 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.39 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 95.38 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 95.34 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 95.33 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 95.32 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 95.32 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 95.32 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 95.3 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.29 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 95.28 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 95.24 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 95.21 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 95.2 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 95.19 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.14 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.13 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 95.11 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 95.06 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.06 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 95.05 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 95.01 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 94.96 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 94.94 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 94.92 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 94.92 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 94.91 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 94.91 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 94.89 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 94.87 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 94.87 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 94.87 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 94.86 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 94.78 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 94.76 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 94.76 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 94.76 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.69 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 94.67 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 94.63 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 94.62 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 94.59 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 94.57 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 94.57 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 94.55 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 94.41 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 94.38 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 94.33 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 94.32 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 94.31 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 94.29 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 94.25 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 94.25 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 94.22 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 94.17 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 94.15 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 94.14 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 94.14 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 94.11 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.11 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 94.07 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 94.07 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 94.06 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 94.03 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 94.01 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 93.98 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 93.97 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 93.97 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 93.97 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 93.96 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 93.93 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 93.91 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 93.82 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 93.82 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 93.82 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 93.81 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 93.78 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 93.76 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 93.74 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 93.74 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 93.73 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 93.72 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 93.71 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 93.69 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 93.68 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 93.68 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 93.64 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.63 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 93.62 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 93.62 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 93.58 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 93.57 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 93.55 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 93.55 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 93.45 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 93.41 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 93.41 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 93.37 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 93.34 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 93.32 | |
| 3au8_A | 488 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 93.3 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 93.28 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 93.27 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 93.27 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 93.25 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 93.22 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 93.19 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 93.17 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 93.14 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 93.14 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 93.13 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 93.02 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 93.01 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 93.0 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 92.99 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 92.97 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 92.97 | |
| 2y1e_A | 398 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; o | 92.96 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 92.96 | |
| 1q0q_A | 406 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; o | 92.89 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 92.83 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 92.81 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 92.76 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 92.61 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 92.6 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 92.57 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 92.54 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 92.47 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 92.47 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 92.46 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 92.4 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 92.37 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 92.37 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 92.3 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 92.27 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 92.23 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 92.16 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 92.09 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 92.08 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 92.01 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 91.98 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 91.84 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.83 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 91.82 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 91.8 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 91.78 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 91.78 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 91.68 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 91.67 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 91.64 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 91.64 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 91.62 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 91.59 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 91.54 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 91.52 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 91.49 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 91.43 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 91.39 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 91.38 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 91.3 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 91.19 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 91.13 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 91.12 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 91.1 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 90.91 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 90.83 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 90.79 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 90.72 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 90.72 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 90.7 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 90.54 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 90.49 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 90.48 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 90.43 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 90.38 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 90.37 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 90.22 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 90.15 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 90.04 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 90.01 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 89.93 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 89.93 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 89.86 |
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-59 Score=445.49 Aligned_cols=230 Identities=46% Similarity=0.686 Sum_probs=216.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
++||+|+|||||+|++|+++|++|+||..++..++|++++|+.+.+.+.++.+.+++.+++.++|+||+|+|++.+++++
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~a 81 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYA 81 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECCChHhHHHHH
Confidence 47999999999999999999999999999999999999999999988888888888777788999999999999999999
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEee
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q 198 (279)
++++++|++|||+|++||+++++||+|||||+++++. +.++||||||||++++++|+||++.++|++++|+|||
T Consensus 82 ~~~~~~G~~vIDlSa~~R~~~~~p~~vpevN~~~i~~------~~~iIanpgC~tt~~~l~l~pL~~~~~i~~i~v~t~~ 155 (366)
T 3pwk_A 82 PYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDA------HNGIIACPNCSTIQMMVALEPVRQKWGLDRIIVSTYQ 155 (366)
T ss_dssp HHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGTT------CCSEEECCCHHHHHHHHHHHHHHHHHCCSEEEEEEEB
T ss_pred HHHHHCCCEEEEcCCccccCCCceEEEccCCHHHHcC------CCCeEECCCcHHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 9999999999999999999999999999999999973 3789999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHHHHHHHhcC----CCCCccccc-------cccccccccCCCCcccCCChHHHHhHHHHHHHhcCCC
Q 023678 199 AASGAGAAAMEELELQTREVLEG----KPPTCKIFS-------QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSF 267 (279)
Q Consensus 199 ~vSGaG~~~~~El~~qt~~l~~g----~~~~~~~f~-------~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~ 267 (279)
|+|||||++++||..|++.+++| ++++.+.|+ .||+||++|+|+.++++|||+||+|+.+|++|||+.+
T Consensus 156 ~vSGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~~HrH~~ia~NviP~I~~~~~~g~t~EE~k~~~E~~kil~~~ 235 (366)
T 3pwk_A 156 AVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDD 235 (366)
T ss_dssp CGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSSCTTSSCCCCCTTCCBCCSSCBCTTSSBHHHHHHHHHHHHHTTCT
T ss_pred eccccCcchhhHHHHHHHHHhcccccccccCcccCCcccccccchhhccccceecccccCCCcHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998887 555667898 8999999999999999999999999999999999988
Q ss_pred CccEEee
Q 023678 268 KMNFFVS 274 (279)
Q Consensus 268 ~~~v~~~ 274 (279)
++.|+.|
T Consensus 236 ~~~v~ft 242 (366)
T 3pwk_A 236 SIAVSAT 242 (366)
T ss_dssp TSEEEEE
T ss_pred CCCeEEE
Confidence 8877777
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-59 Score=438.41 Aligned_cols=230 Identities=37% Similarity=0.574 Sum_probs=214.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~ 119 (279)
+||||+|||||+|++|+++|++|+||.+++..++|++++|+++.+.+.++.+++.+.+++.++|+||+|+|++.++++++
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~a~ 81 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAMSKVQAP 81 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSCHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCChHHHHHHHH
Confidence 79999999999999999999999999999999999999999999888788888888778889999999999999999999
Q ss_pred HHHhCCCEEEEcCCCCCCCCCCceeeccCCH-HhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEee
Q 023678 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNP-EAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (279)
Q Consensus 120 ~~~~aG~~VIDlS~~~R~~~~vplvvPevN~-~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q 198 (279)
+++++|++|||+|++||+++++||+|||||+ ++++.. +.++||||||||++++++|+||++.++|++++|+|||
T Consensus 82 ~~~~~G~~vID~Sa~~R~~~~~p~~vpevN~~~~i~~~-----~~~iIanpgC~tt~~~l~l~pL~~~~~i~~i~v~t~~ 156 (344)
T 3tz6_A 82 RFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRR-----PKGIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQ 156 (344)
T ss_dssp HHHHTTCEEEECSSTTTTCTTSCBCCTTTSHHHHTTCC-----TTSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEB
T ss_pred HHHhCCCEEEECCCccccCCCccEEEccCCCHHHhhhc-----CCCEEECCCcHHHHHHHHHHHHHHhCCCceEEEEecc
Confidence 9999999999999999999999999999999 888731 2589999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHHHHHHH--------hcCCCC---CccccccccccccccCCCCcccCCC--hHHHHhHHHHHHHhcC
Q 023678 199 AASGAGAAAMEELELQTREV--------LEGKPP---TCKIFSQQYAFNLFSHNAPVLENGY--NEEEMKMVKETRKIWV 265 (279)
Q Consensus 199 ~vSGaG~~~~~El~~qt~~l--------~~g~~~---~~~~f~~~iafN~iP~i~~~~~~g~--t~eE~k~~~E~~kil~ 265 (279)
|+|||||++++||..|++.+ ++|++. ++..|+.+++||++|||+.|.++|| ++||+|+.+|++||+|
T Consensus 157 ~~SGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aynv~p~i~~~~~~ghrHt~EE~k~~~e~~kilg 236 (344)
T 3tz6_A 157 AVSGSGLAGVAELAEQARAVIGGAEQLVYDGGALEFPPPNTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKILG 236 (344)
T ss_dssp CGGGGCHHHHHHHHHHHHHHGGGGGGGGTCTTSSCCCCCSSSSSCCTTCCBCCCSCBCSSSSCCBHHHHHHHHHHHHHHT
T ss_pred CCCccChhhhHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCCCcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999987 677765 4468999999999999999999999 9999999999999999
Q ss_pred CCCccEEee
Q 023678 266 SFKMNFFVS 274 (279)
Q Consensus 266 ~~~~~v~~~ 274 (279)
++++.|+.|
T Consensus 237 ~~~~~v~ft 245 (344)
T 3tz6_A 237 IPDLLVSGT 245 (344)
T ss_dssp CTTCEEEEE
T ss_pred CCCCceEEE
Confidence 888877776
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-58 Score=433.84 Aligned_cols=232 Identities=26% Similarity=0.282 Sum_probs=203.6
Q ss_pred CEEEEECcCcHHHHHHHH-HHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecC-ccCCCCCcEEEecCCCchhhh
Q 023678 40 PSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~-lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~ 116 (279)
|||||+|||||||++|+| +|++|+||..++.+++|++ +|+++. +.+.++.+.+.+ .+.+.++|+||+|+|++.+++
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~ 79 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEK 79 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCCceEEEecCChhHhccCCEEEECCChHHHHH
Confidence 689999999999999999 9999977789999887775 998865 555556666653 455789999999999999999
Q ss_pred hHHHHHhCCC--EEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEE
Q 023678 117 FGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (279)
Q Consensus 117 ~~~~~~~aG~--~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~v 194 (279)
++++++++|+ +|||+|++||+++++||+|||||+++++..+. ...++||||||||++++++|+||+++++|++++|
T Consensus 80 ~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~--~~i~~Ianp~C~tt~~~l~L~pL~~~~~I~~i~v 157 (370)
T 3pzr_A 80 VYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIH--HGTKTFVGGNCTVSLMLMALGGLYERGLVEWMSA 157 (370)
T ss_dssp HHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHH--TTCCEEEECCHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHhhhhh--cCCcEEEcCChHHHHHHHHHHHHHHhCCCcEEEE
Confidence 9999999997 89999999999999999999999999974210 0125699999999999999999999999999999
Q ss_pred EEeecccccChhhHHHHHHHHHHHhc-------------------------CCCCCccccccccccccccCCCCcccCCC
Q 023678 195 STYQAASGAGAAAMEELELQTREVLE-------------------------GKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 195 tt~q~vSGaG~~~~~El~~qt~~l~~-------------------------g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
+||||+||||+++++||.+|++.+++ +++++.+.|++|++||++||++.|.++||
T Consensus 158 ~t~~avSGAG~~~~~el~~q~~~~~~~~~~~l~~p~~~ild~~~~~~~~~~~~~~~~~~f~~~ia~N~~P~i~~~~~~g~ 237 (370)
T 3pzr_A 158 MTYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQ 237 (370)
T ss_dssp EEEBCGGGTCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSTTSCCTTTSSCCTTSEESCCSCBCTTSC
T ss_pred EeEEeccccChhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccCceeeeccccccCCC
Confidence 99999999999999999999976542 46677789999999999999999999999
Q ss_pred hHHHHhHHHHHHHhcCC--CCccEEee
Q 023678 250 NEEEMKMVKETRKIWVS--FKMNFFVS 274 (279)
Q Consensus 250 t~eE~k~~~E~~kil~~--~~~~v~~~ 274 (279)
++||+|+++|++||||. +++.|+.|
T Consensus 238 t~EE~ki~~E~~kilg~~~~~i~V~~t 264 (370)
T 3pzr_A 238 SKEEWKAGVEANKILGLQDSPVPIDGT 264 (370)
T ss_dssp BHHHHHHHHHHHHHTTCTTSCCCEECC
T ss_pred CHHHHHHHHHHHHHhCccCCCceEEEE
Confidence 99999999999999996 56666555
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-57 Score=432.63 Aligned_cols=233 Identities=27% Similarity=0.326 Sum_probs=204.6
Q ss_pred CCEEEEECcCcHHHHHHHH-HHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecC-ccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELT-EDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~-lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~ 115 (279)
++||||+|||||||++|+| +|++|+||..++..++|+ ++|+++. +.+.++.+.+.+ .+.+.++|+||+|+|++.++
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~~~~~~~~~v~~~~~~~~~~~vDvvf~a~~~~~s~ 82 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAPSFAKNETTLKDATSIDDLKKCDVIITCQGGDYTN 82 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCCTTCCSCCBCEETTCHHHHHTCSEEEECSCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHHHcCCCceEEEeCCChhHhcCCCEEEECCChHHHH
Confidence 5899999999999999999 999997778999888776 8998865 555556666653 44577899999999999999
Q ss_pred hhHHHHHhCCC--EEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEE
Q 023678 116 KFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMV 193 (279)
Q Consensus 116 ~~~~~~~~aG~--~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~ 193 (279)
+++++++++|+ +|||+|++||+++++||+|||||+++++..+. ...++||||||||++++++|+||+++++|++++
T Consensus 83 ~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~--~~i~~Ianp~C~tt~~~l~L~pL~~~~~I~~i~ 160 (377)
T 3uw3_A 83 DVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIKDALV--NGTKNFIGGNCTVSLMLMALGGLFRENLVDWMT 160 (377)
T ss_dssp HHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHHHHHHH--TTCCEEEECCHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHHhhhhh--cCCcEEEcCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999998 89999999999999999999999999974210 012469999999999999999999999999999
Q ss_pred EEEeecccccChhhHHHHHHHHHHHhc-------------------------CCCCCccccccccccccccCCCCcccCC
Q 023678 194 VSTYQAASGAGAAAMEELELQTREVLE-------------------------GKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (279)
Q Consensus 194 vtt~q~vSGaG~~~~~El~~qt~~l~~-------------------------g~~~~~~~f~~~iafN~iP~i~~~~~~g 248 (279)
|+||||+||||+++++||.+|++.+++ +++++.+.|++|++||++||++.|.++|
T Consensus 161 v~t~~avSGAG~~~~~el~~q~~~l~~~~~~~~~~p~~~ild~~~~~~~~~~~~~~~~~~f~~~ia~N~~P~i~~~~~~g 240 (377)
T 3uw3_A 161 AMTYQAASGAGAQNMRELLAQMGTLNGAVAAQLADPASAILDIDRRVLAAMNGDAMPTSQFGVPLAGSLIPWIDKDLGNG 240 (377)
T ss_dssp EEEEBCGGGTCHHHHHHHHHHHHHHHHTTHHHHTCTTSCHHHHHHHHHHHHHSTTSCCTTTSSCCTBSCBSCCSCBCSSS
T ss_pred EeeeecccccchhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccCceEEeecccccCC
Confidence 999999999999999999999987653 4556778999999999999999999999
Q ss_pred ChHHHHhHHHHHHHhcCCC------CccEEee
Q 023678 249 YNEEEMKMVKETRKIWVSF------KMNFFVS 274 (279)
Q Consensus 249 ~t~eE~k~~~E~~kil~~~------~~~v~~~ 274 (279)
|++||+|+++|++||||.+ ++.|+.|
T Consensus 241 ~t~EE~ki~~E~~kilg~~~~~~~~~i~Vs~t 272 (377)
T 3uw3_A 241 MSREEWKGGAETNKILGKPAMGEPGSVPVDGL 272 (377)
T ss_dssp CBHHHHHHHHHHHHHHTCCCTTSTTCCCEEEE
T ss_pred CCHHHHHHHHHHHHHhcccccccCCCceEEEE
Confidence 9999999999999999974 5666665
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-55 Score=410.61 Aligned_cols=233 Identities=45% Similarity=0.714 Sum_probs=188.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+++||+|+||||++|++|+|+|.+|+||.++++++.+++++|+.+.+.+.++.+.+.+++.|.++|+||+|+|++.++++
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~s~~~ 81 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSAKW 81 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHHHHHH
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchHHHHH
Confidence 46899999999999999999999998999999999999999998888777777777776678889999999999999999
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEe
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTY 197 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~ 197 (279)
++.++++|++|||+|++||+++++||++||||+++++..+ +.++||||||||++++++|+||+++++|++++|+||
T Consensus 82 a~~~~~~G~~vId~s~~~R~~~~~~~~vpevN~~~i~~~~----~~~iIanp~C~tt~~~~~l~pL~~~~~i~~~~vtt~ 157 (336)
T 2r00_A 82 APIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR----NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTY 157 (336)
T ss_dssp HHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGGGG----GTTEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEE
T ss_pred HHHHHHcCCEEEEcCCccccCCCCCeEeccCCHHHhcccc----CCcEEECCChHHHHHHHHHHHHHHhCCccEEEEEEE
Confidence 9999999999999999999999999999999999997310 267999999999999999999999999999999999
Q ss_pred ecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 198 QAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 198 q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
||+||+|+++++++..|++.+++|.+.+...|++++++|++||++.|.++||++||+|+++|++|||+.++++|+-+
T Consensus 158 ~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~Ee~k~~~e~~kil~~~~~~v~~t 234 (336)
T 2r00_A 158 QSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPT 234 (336)
T ss_dssp EESSSCCTTSCC-----------------------------CCBCTTTCSSCBHHHHHHHHHHHHHTTCTTCEEEEE
T ss_pred EecccCChhhhHHHHHHHHHhhcCCCCCccccchhhhcCcccccCCcccCCccHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 99999999999999999999999888777889999999999999999999999999999999999998777776665
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-53 Score=399.18 Aligned_cols=228 Identities=48% Similarity=0.700 Sum_probs=211.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~ 119 (279)
|||+|+||||++|++|+|+|.+++||..++..+.++++.|+.+.+.+.++.+.+.++++| ++|+||+|+|++.++++++
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~~~~~-~~DvV~~a~g~~~s~~~a~ 79 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGPL-PVDLVLASAGGGISRAKAL 79 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECCSSCC-CCSEEEECSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCChhhc-CCCEEEECCCccchHHHHH
Confidence 589999999999999999999778899999888888889998888777777776666668 9999999999999999999
Q ss_pred HHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEeec
Q 023678 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQA 199 (279)
Q Consensus 120 ~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~ 199 (279)
.++++|++|||+|++|||++++||+|||||+++++. ..++||||||||++++++|+||+++++|++++|+||||
T Consensus 80 ~~~~~G~~vId~s~~~R~~~~~~~~vpevN~~~i~~------~~~iIanp~C~tt~~~~~l~pL~~~~~I~~~~vtt~~~ 153 (331)
T 2yv3_A 80 VWAEGGALVVDNSSAWRYEPWVPLVVPEVNREKIFQ------HRGIIANPNCTTAILAMALWPLHRAFQAKRVIVATYQA 153 (331)
T ss_dssp HHHHTTCEEEECSSSSTTCTTSCBCCTTSCGGGGGG------CSSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEBC
T ss_pred HHHHCCCEEEECCCccccCCCCCEEEcCcCHHHhcC------CCCEEECCCHHHHHHHHHHHHHHHhCCceEEEEEEEee
Confidence 999999999999999999999999999999999983 26799999999999999999999999999999999999
Q ss_pred ccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 200 ASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 200 vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
+||+||++++||++|++.++.|...+...|++++++|++|+++.|++++||.||+|+++|++|||+.+++.++-+
T Consensus 154 ~SgaG~~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiP~~~~~~~~~ht~e~~~i~~e~~kil~~~~l~v~~~ 228 (331)
T 2yv3_A 154 ASGAGAKAMEELLTETHRFLHGEAPKAEAFAHPLPFNVIPHIDAFQENGYTREEMKVVWETHKIFGDDTIRISAT 228 (331)
T ss_dssp GGGGCHHHHHHHHHHHHHHHTSSCCCCCSSSSCCTTCCBSCCSCBCTTSCBHHHHHHHHHHHHHTTCTTCEEEEE
T ss_pred cccCCcchhHHHHHHHHhhhcCccccccccchhhhcCcccccCccccCCCcHHHHHHHHHHHHHhCCCCceEEEE
Confidence 999999999999999999998776667789999999999999999999999999999999999998888886655
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-53 Score=404.19 Aligned_cols=232 Identities=25% Similarity=0.334 Sum_probs=205.4
Q ss_pred CCEEEEECcCcHHHHHHHH-HHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecC-ccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELT-EDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~-lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~ 115 (279)
|+||||+|||||+|++|++ +|++|+||.+++.++.++ +.|+.+. +.+.++.+.+.+ ++.|.++|+||+|+|++.++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~-s~G~~v~~~~g~~i~~~~~~~~~~~~~~DvVf~a~g~~~s~ 79 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-QLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTN 79 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-STTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC-CCCCCccccCCCceEEEecCChHHhcCCCEEEECCCchhHH
Confidence 4799999999999999999 888888888999888776 6998775 444566666653 45578899999999999999
Q ss_pred hhHHHHHhCCC--EEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCC-cEEECCCChHHHHHHhhhchhhhcCccEE
Q 023678 116 KFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKG-ALIANPNCSTIICLMAATPLHRRAKVTRM 192 (279)
Q Consensus 116 ~~~~~~~~aG~--~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~-~iVanPgC~tt~l~laL~PL~~~~~i~~v 192 (279)
+++++++++|+ +|||+|++||+++++||++||||+++++.... .. ++|+||||||++++++|+||++.++|+++
T Consensus 80 ~~a~~~~~~G~k~vVID~ss~~R~~~~~~~~vpevN~~~i~~~~~---~g~~~Ianp~Cttt~~~~al~pL~~~~~I~~~ 156 (367)
T 1t4b_A 80 EIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLN---NGIRTFVGGNCTVSLMLMSLGGLFANDLVDWV 156 (367)
T ss_dssp HHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHH---TTCCEEEECCHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHCCCCEEEEcCChhhccCCCCcEEeCCcCHHHHhhhhh---cCCCEEEeCCHHHHHHHHHHHHHHHcCCCcEE
Confidence 99999999998 89999999999999999999999999974100 12 69999999999999999999999999999
Q ss_pred EEEEeecccccChhhHHHHHHHHHHH-------------------------hcCCCCCccccccccccccccCCCCcccC
Q 023678 193 VVSTYQAASGAGAAAMEELELQTREV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (279)
Q Consensus 193 ~vtt~q~vSGaG~~~~~El~~qt~~l-------------------------~~g~~~~~~~f~~~iafN~iP~i~~~~~~ 247 (279)
+|+||||+||+||++++||.+|++.+ +||++.+++.|+.++++|++||+.++.++
T Consensus 157 ~vtt~~a~SGaG~~~~~el~~~~~~l~~~~~~~~~~~~~~ild~~r~~~~~~~~~~~~~~~f~~~~a~NiiP~~~~~~~~ 236 (367)
T 1t4b_A 157 SVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDN 236 (367)
T ss_dssp EEEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTTCCHHHHHHHHHHHHHHTCSCCTTTSSCCTTCEESCCSCBCTT
T ss_pred EEEEEeccccccccchHHHHHHHhhhhccccccccccccchhhhhhccccccccccCcccccchhhhCceEEEecCcccc
Confidence 99999999999999999999998764 45667788899999999999999999999
Q ss_pred CChHHHHhHHHHHHHhcCC-CCccEEee
Q 023678 248 GYNEEEMKMVKETRKIWVS-FKMNFFVS 274 (279)
Q Consensus 248 g~t~eE~k~~~E~~kil~~-~~~~v~~~ 274 (279)
||++||+|+++|++|||++ ++++|+.+
T Consensus 237 ~~t~EE~k~~~e~~kil~~~~~~~v~~t 264 (367)
T 1t4b_A 237 GQSREEWKGQAETNKILNTSSVIPVDGL 264 (367)
T ss_dssp SCBHHHHHHHHHHHHHHTCSSCCCEEEE
T ss_pred CccHHHHHHHHHHHHHhCcCCCceEEEE
Confidence 9999999999999999987 77877766
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-52 Score=393.31 Aligned_cols=231 Identities=27% Similarity=0.424 Sum_probs=210.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
++||+|+||||++|++|+++|.+++||.++++++.++++.|+.+.+.+.++.+.+.+++.|.++|+||+|+|++.+++++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~~~~~DvV~~a~g~~~s~~~a 85 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHA 85 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHHhcCCCEEEEcCCcHHHHHHH
Confidence 37999999999999999999997778999999999999999888776666666666655688999999999999999999
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEee
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q 198 (279)
+.++++|++|||+|++|| ++++||++||||+++++..+ +.++|+||||||++++++|+||+++++|++++|+|||
T Consensus 86 ~~~~~aG~kvId~Sa~~r-d~~~~~~vpevN~~~i~~~~----~~~iIanp~C~tt~~~~~l~pL~~~~~i~~~~v~t~~ 160 (340)
T 2hjs_A 86 ERARAAGCSVIDLSGALE-PSVAPPVMVSVNAERLASQA----APFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACL 160 (340)
T ss_dssp HHHHHTTCEEEETTCTTT-TTTSCBCCHHHHGGGGGGSC----SSCEEECCCHHHHHHHHHHHHHTTTCCEEEEEEEEEE
T ss_pred HHHHHCCCEEEEeCCCCC-CCCCCeEEcCcCHHHHhcCc----CCCEEEcCCHHHHHHHHHHHHHHHhcCcceEEEEEec
Confidence 999999999999999999 88899999999999998410 1279999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 199 AASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 199 ~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
|+||+||++++++..|++.|.+|++++...|++++++|++||+..|.++||++||+|+++|++|||+.++++|+-+
T Consensus 161 ~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~Ee~k~~~~~~kil~~~~~~v~~~ 236 (340)
T 2hjs_A 161 SVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPLNVT 236 (340)
T ss_dssp CGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTCCBSSSSCBCTTSCBHHHHHHHHHHHHHTGGGBCCEEEE
T ss_pred ccCCCCccccHhHHHHHHHHhccCCccccccchhhccCeeccccCcccCCccHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 9999999999999999999999998888999999999999999999999999999999999999998766666655
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-50 Score=378.83 Aligned_cols=199 Identities=26% Similarity=0.368 Sum_probs=174.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC------------CceeEEeecCccCCCCCcEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ------------DKAYTVEELTEDSFDGVDIA 105 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~------------~~~~~v~~~d~~~~~~~DvV 105 (279)
+++||||+|||||+|++|+++|++| |.+++..++|++++|+++.+. ..++.+.+++.+++.++|+|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~h--P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDvv 83 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNH--PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDII 83 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTC--SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhC--CCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCEE
Confidence 3589999999999999999999887 999999999999999987641 12556677776678899999
Q ss_pred EecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccC----CCCCcEEECCCChHHHHHHhhh
Q 023678 106 LFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG----MGKGALIANPNCSTIICLMAAT 181 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~----~~~~~iVanPgC~tt~l~laL~ 181 (279)
|+|+|++.+++++++++++|++|||+|++||+++++||++||||+++++.++.+ .|+.++|||||||||+++++|+
T Consensus 84 f~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIanPgC~tt~~~l~L~ 163 (359)
T 4dpl_A 84 FSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLG 163 (359)
T ss_dssp EECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEECCCHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEECCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998533211 1235799999999999999999
Q ss_pred chhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHH
Q 023678 182 PLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETR 261 (279)
Q Consensus 182 PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~ 261 (279)
||+++++|++++|+||||+||+|+.++.+. .+++|++||+.+ ||+|+..|++
T Consensus 164 PL~~~~gi~~v~v~t~~g~SGaG~~~~~~~--------------------~~~~N~ipy~~~--------~e~k~~~Ei~ 215 (359)
T 4dpl_A 164 AIFKDYKMDGAFITTIQSLSGAGYPGIPSL--------------------DVVDNILPLGDG--------YDAKTIKEIF 215 (359)
T ss_dssp HHHHHSCEEEEEEEEEBCGGGGCSSCSBHH--------------------HHTTCCEECCHH--------HHHHHHHHHH
T ss_pred HHHHhcCCcEEEEEEEeccccCCCcCccCh--------------------HHhCCeEeecCc--------HHHHHHHHHH
Confidence 999999999999999999999999977653 257899999975 8899999999
Q ss_pred HhcCC
Q 023678 262 KIWVS 266 (279)
Q Consensus 262 kil~~ 266 (279)
|||+.
T Consensus 216 kil~~ 220 (359)
T 4dpl_A 216 RILSE 220 (359)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 99985
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-50 Score=378.83 Aligned_cols=199 Identities=26% Similarity=0.368 Sum_probs=174.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC------------CceeEEeecCccCCCCCcEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ------------DKAYTVEELTEDSFDGVDIA 105 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~------------~~~~~v~~~d~~~~~~~DvV 105 (279)
+++||||+|||||+|++|+++|++| |.+++..++|++++|+++.+. ..++.+.+++.+++.++|+|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~h--P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDvv 83 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNH--PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDII 83 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTC--SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhC--CCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCEE
Confidence 3589999999999999999999887 999999999999999987641 12556677776678899999
Q ss_pred EecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccC----CCCCcEEECCCChHHHHHHhhh
Q 023678 106 LFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG----MGKGALIANPNCSTIICLMAAT 181 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~----~~~~~iVanPgC~tt~l~laL~ 181 (279)
|+|+|++.+++++++++++|++|||+|++||+++++||++||||+++++.++.+ .|+.++|||||||||+++++|+
T Consensus 84 f~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIanPgC~tt~~~l~L~ 163 (359)
T 4dpk_A 84 FSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLG 163 (359)
T ss_dssp EECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEECCCHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEECCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998533211 1235799999999999999999
Q ss_pred chhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHH
Q 023678 182 PLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETR 261 (279)
Q Consensus 182 PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~ 261 (279)
||+++++|++++|+||||+||+|+.++.+. .+++|++||+.+ ||+|+..|++
T Consensus 164 PL~~~~gi~~v~v~t~~g~SGaG~~~~~~~--------------------~~~~N~ipy~~~--------~e~k~~~Ei~ 215 (359)
T 4dpk_A 164 AIFKDYKMDGAFITTIQSLSGAGYPGIPSL--------------------DVVDNILPLGDG--------YDAKTIKEIF 215 (359)
T ss_dssp HHHHHSCEEEEEEEEEECSGGGCSSCSBGG--------------------GTTTCCEECCHH--------HHHHHHHHHH
T ss_pred HHHHhcCCcEEEEEEEeccccCCCcCccCh--------------------HHhCCeEeecCc--------HHHHHHHHHH
Confidence 999999999999999999999999865431 368999999975 8899999999
Q ss_pred HhcCC
Q 023678 262 KIWVS 266 (279)
Q Consensus 262 kil~~ 266 (279)
|||+.
T Consensus 216 kil~~ 220 (359)
T 4dpk_A 216 RILSE 220 (359)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 99985
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=365.97 Aligned_cols=199 Identities=33% Similarity=0.442 Sum_probs=166.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE-eecCCCCceeeeC------------CceeEEeecCcc-CCCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQ------------DKAYTVEELTED-SFDGVD 103 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l-~s~~s~G~~~~~~------------~~~~~v~~~d~~-~~~~~D 103 (279)
+++||||+|||||+|++|+++|++| |++++..+ +|++++|+++... ..++.+++.+.+ ++.++|
T Consensus 18 ~~~kVaIvGAtG~vG~ell~lL~~h--p~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~D 95 (381)
T 3hsk_A 18 SVKKAGVLGATGSVGQRFILLLSKH--PEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECD 95 (381)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTC--SSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGCS
T ss_pred CccEEEEECCCChHHHHHHHHHHcC--CCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcccCC
Confidence 4589999999999999999999988 99999876 5899999987521 135667777665 688999
Q ss_pred EEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhcc---c------cCCCCCcEEECCCChHH
Q 023678 104 IALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGI---K------VGMGKGALIANPNCSTI 174 (279)
Q Consensus 104 vVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~---~------~~~~~~~iVanPgC~tt 174 (279)
+||+|+|++++++++++++++|++|||+|++||+++++|+++||+|++.+... + .+.++.++|||||||+|
T Consensus 96 vvf~alp~~~s~~~~~~~~~~G~~VIDlSa~fR~~~~vplvv~~vn~~~~~l~E~~r~~~~~~~~i~~~~iIaNPgC~tt 175 (381)
T 3hsk_A 96 VVFSGLDADVAGDIEKSFVEAGLAVVSNAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNCSTA 175 (381)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEECCSTTTTCTTSCEECTTTCGGGGHHHHHHHHHHHHTTCCCCCEEEEECCHHHH
T ss_pred EEEECCChhHHHHHHHHHHhCCCEEEEcCCcccCCCCCcEEecccCHHHcCCHhhhhhhhcccccccCCcEEECCCcHHH
Confidence 99999999999999999999999999999999999999999999999876410 0 01125789999999999
Q ss_pred HHHHhhhchhhhcC-ccEEEEEEeecccccCh-hhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHH
Q 023678 175 ICLMAATPLHRRAK-VTRMVVSTYQAASGAGA-AAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEE 252 (279)
Q Consensus 175 ~l~laL~PL~~~~~-i~~v~vtt~q~vSGaG~-~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~e 252 (279)
+++++|+||+++++ |++++|+||||+||||| .+++++ ++++|++||+.+ |
T Consensus 176 ~~~laL~PL~~~~glI~~v~v~t~~gvSGAG~~~~~~~~--------------------~~~~N~~Py~~~--------~ 227 (381)
T 3hsk_A 176 GLVAPLKPLVEKFGPIDALTTTTLQAISGAGFSPGVSGM--------------------DILDNIVPYISG--------E 227 (381)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEEEBCCCC------CCHH--------------------HHTTCCBCCCTT--------H
T ss_pred HHHHHHHHHHHhcCCceEEEEEEeeccCCCCccCCcchh--------------------hhhcChhhcccc--------h
Confidence 99999999999866 89999999999999999 455542 357899999986 8
Q ss_pred HHhHHHHHHHhcCC
Q 023678 253 EMKMVKETRKIWVS 266 (279)
Q Consensus 253 E~k~~~E~~kil~~ 266 (279)
|+|+..|++|||+.
T Consensus 228 e~k~~~Ei~kiL~~ 241 (381)
T 3hsk_A 228 EDKLEWETKKILGG 241 (381)
T ss_dssp HHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHhhh
Confidence 89999999999984
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-47 Score=356.50 Aligned_cols=209 Identities=22% Similarity=0.380 Sum_probs=180.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-----eCCceeEEeecCccCC-CCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-----FQDKAYTVEELTEDSF-DGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-----~~~~~~~v~~~d~~~~-~~~DvVf~a~g~ 111 (279)
-|+||+|+|||||+|++|+|+|++| |.+++..++|++++|+++. +. .++.+.+.+.+++ .++|+||+|+|+
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~h--P~~el~~l~S~~~aG~~~~~~~p~~~-~~l~~~~~~~~~~~~~~Dvvf~alp~ 88 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKNH--PEAKITYLSSRTYAGKKLEEIFPSTL-ENSILSEFDPEKVSKNCDVLFTALPA 88 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHC--TTEEEEEEECSTTTTSBHHHHCGGGC-CCCBCBCCCHHHHHHHCSEEEECCST
T ss_pred ceeEEEEECCCCHHHHHHHHHHHcC--CCcEEEEEeCcccccCChHHhChhhc-cCceEEeCCHHHhhcCCCEEEECCCc
Confidence 3789999999999999999999998 9999999999999999887 33 4556666655554 689999999999
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCCCCCC-CC-----------------ceeeccCCHHhhhccccCCCCCcEEECCCChH
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAFRMVE-NV-----------------PLVIPEVNPEAMSGIKVGMGKGALIANPNCST 173 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~R~~~-~v-----------------plvvPevN~~~i~~~~~~~~~~~iVanPgC~t 173 (279)
++|+++++++ +|++|||+|++|||++ ++ +|++||+|+++|+ +.++|||||||+
T Consensus 89 ~~s~~~~~~~--~g~~VIDlSsdfRl~~~~~y~~~y~~~h~~p~~~~~~yglPE~n~e~i~-------~a~iIANPgC~~ 159 (351)
T 1vkn_A 89 GASYDLVREL--KGVKIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHREEIK-------NAQVVGNPGCYP 159 (351)
T ss_dssp THHHHHHTTC--CSCEEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHHHHT-------TCSEEECCCHHH
T ss_pred HHHHHHHHHh--CCCEEEECChhhhCCchhhhhhhcCCCCCchhhcCCceECCccCHHHhc-------cCCEEeCCChHH
Confidence 9999999998 8999999999999986 43 8999999999998 478999999999
Q ss_pred HHHHHhhhchhhhcCcc--EEEEEEeecccccChhhH-----------------------HHHHHHHHHHhcCCCCCccc
Q 023678 174 IICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAM-----------------------EELELQTREVLEGKPPTCKI 228 (279)
Q Consensus 174 t~l~laL~PL~~~~~i~--~v~vtt~q~vSGaG~~~~-----------------------~El~~qt~~l~~g~~~~~~~ 228 (279)
|+++++|+||+++++|+ +|+|+||||+|||||+++ +|+.++++.++ |.++
T Consensus 160 t~~~laL~PL~~~~~i~~~~iiv~t~sgvSGAG~~~~~~~~~~e~~~n~~~y~~~~h~h~pEi~~el~~i~-~~~~---- 234 (351)
T 1vkn_A 160 TSVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVDYLFSEVNESLRPYNVAKHRHVPEMEQELGKIS-GKKV---- 234 (351)
T ss_dssp HHHHHHHHHHHHTTCSCCSEEEEEEEEEGGGGCSCCSGGGBHHHHTTCCEECSCSCCTHHHHHHHHHHHHH-TSCC----
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEEEeeccccCcccccccchhHHhcccccCCccccccHHHHHHHHHHhh-CCCC----
Confidence 99999999999999998 999999999999999873 88888888876 3333
Q ss_pred cccccccccccCCCCcccCCChHHHHhHHHHHHHhcC
Q 023678 229 FSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWV 265 (279)
Q Consensus 229 f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~ 265 (279)
...+..+++|+.++++++.|.+-+ -..+|++++|.
T Consensus 235 -~v~ftp~rvPv~rG~~~tv~v~l~-~~~eei~~~l~ 269 (351)
T 1vkn_A 235 -NVVFTPHLVPMTRGILSTIYVKTD-KSLEEIHEAYL 269 (351)
T ss_dssp -EEEEEEEEESSSSCEEEEEEEECS-SCHHHHHHHHH
T ss_pred -CEEEEEEEeccccEEEEEEEEEEc-CCHHHHHHHHH
Confidence 335789999999999999986654 44566777764
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=337.18 Aligned_cols=213 Identities=23% Similarity=0.313 Sum_probs=180.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCC-CC--ceEEEEEeecCCCCceeee-----CC-ceeEEeecCccCCCCCcEEEec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRD-FP--YRSIKMLASKRSAGKQLSF-----QD-KAYTVEELTEDSFDGVDIALFS 108 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~-~p--~~~l~~l~s~~s~G~~~~~-----~~-~~~~v~~~d~~~~~~~DvVf~a 108 (279)
+|+||+|+||||++|++|+++|.+|+ || .++++++.|++++|+.+.. .+ .++.+.+.+.++|.++|+||+|
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~a 87 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDAVFLA 87 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHTTCSEEEEC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhcCCCEEEEC
Confidence 35799999999999999999999983 33 8999999999999987652 12 2445556665557789999999
Q ss_pred CCCchhhhhHHHHHhCCCEEEEcCCCCCCCC-C-------------CceeeccC--CHHhhhccccCCCCCcEEECCCCh
Q 023678 109 AGGSISKKFGPIAVEKGSIVVDNSSAFRMVE-N-------------VPLVIPEV--NPEAMSGIKVGMGKGALIANPNCS 172 (279)
Q Consensus 109 ~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~-~-------------vplvvPev--N~~~i~~~~~~~~~~~iVanPgC~ 172 (279)
+|++.++++++.+ ++|++|||+|++||+++ + ++|++||| |+++++ +.++|||||||
T Consensus 88 lg~~~s~~~~~~~-~~G~~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv~~n~~~i~-------~~~iIanPgC~ 159 (352)
T 2nqt_A 88 LPHGHSAVLAQQL-SPETLIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPELPGARDQLR-------GTRRIAVPGCY 159 (352)
T ss_dssp CTTSCCHHHHHHS-CTTSEEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTSTTHHHHHT-------TCSEEECCCHH
T ss_pred CCCcchHHHHHHH-hCCCEEEEECCCccCCcchhhhhhccccCCCCeeEEecccccCHHHHh-------cCCEEEcCCHH
Confidence 9999999999999 99999999999999977 4 39999999 999998 47899999999
Q ss_pred HHHHHHhhhchhhhcCcc-EEEEEEeecccccChhhH------------------------HHHHHHHHHHhcCCCCCcc
Q 023678 173 TIICLMAATPLHRRAKVT-RMVVSTYQAASGAGAAAM------------------------EELELQTREVLEGKPPTCK 227 (279)
Q Consensus 173 tt~l~laL~PL~~~~~i~-~v~vtt~q~vSGaG~~~~------------------------~El~~qt~~l~~g~~~~~~ 227 (279)
+|+++++|+||+++++|+ +++|+||||+||+|++++ +|++++++.++ |.++
T Consensus 160 tt~~~lal~PL~~~~~i~~~i~v~t~~g~SGaG~~~~~~~~~~~~~~~~~ay~~~~~h~h~pEi~~e~~ki~-~~~~--- 235 (352)
T 2nqt_A 160 PTAALLALFPALAADLIEPAVTVVAVSGTSGAGRAATTDLLGAEVIGSARAYNIAGVHRHTPEIAQGLRAVT-DRDV--- 235 (352)
T ss_dssp HHHHHHHHHHHHHTTCSCSEEEEEEEECGGGGCSSCCGGGSHHHHTTCCEECSTTTTSTTHHHHHHHHHTTC-SSCC---
T ss_pred HHHHHHHHHHHHHcCCCcceEEEEEEeccccCCccccccccHHHHhhhcccccCCCcceecHHHHHHHHHHh-CCCC---
Confidence 999999999999999998 999999999999999884 66777777664 3322
Q ss_pred ccccccccccccCCCCcccCCChHHHHhHHHHHHHhcC
Q 023678 228 IFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWV 265 (279)
Q Consensus 228 ~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~ 265 (279)
...+..+.+|..++++.+.|.+-+.. .+|++++|.
T Consensus 236 --~v~ft~~rvP~~rG~~~ti~~~l~~~-~~ei~~~~~ 270 (352)
T 2nqt_A 236 --SVSFTPVLIPASRGILATCTARTRSP-LSQLRAAYE 270 (352)
T ss_dssp --EEEEEEEECSCSSCEEEEEEEECCSC-HHHHHHHHH
T ss_pred --CEEEEEEEEccccEEEEEEEEEECCC-HHHHHHHHH
Confidence 23578899999999999998776655 788888874
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=326.73 Aligned_cols=199 Identities=30% Similarity=0.432 Sum_probs=168.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe-ecCCCCceeee--C----------CceeEEeecCccCCCCCcE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA-SKRSAGKQLSF--Q----------DKAYTVEELTEDSFDGVDI 104 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~-s~~s~G~~~~~--~----------~~~~~v~~~d~~~~~~~Dv 104 (279)
+++||+|+||||++|++++|+|.+| |.++++++. ++++.|+.+.. + +.++.+.+.+++.|.++|+
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~--p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~vDv 80 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKH--PYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDHKDVDV 80 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTC--SSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGGTTCSE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhC--CCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHHhcCCCE
Confidence 4589999999999999999999988 999999996 67788876531 1 2345566666566788999
Q ss_pred EEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccc---cC-CCCCcEEECCCChHHHHHHhh
Q 023678 105 ALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK---VG-MGKGALIANPNCSTIICLMAA 180 (279)
Q Consensus 105 Vf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~---~~-~~~~~iVanPgC~tt~l~laL 180 (279)
||+|+|++.++++++.++++|++|||+|++||+++++|+++||||++.+...+ +. .|+.++|||||||||+++++|
T Consensus 81 Vf~atp~~~s~~~a~~~~~aG~~VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~~iIanpgC~tt~~~l~l 160 (350)
T 2ep5_A 81 VLSALPNELAESIELELVKNGKIVVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPI 160 (350)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGGHHHHHHHHTCSSEEEECCCHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHCCCEEEECCccccCCCCCCeeCCccCHHHhcChHhhhhhcccCceEEEcCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988665211 00 014679999999999999999
Q ss_pred hchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHH
Q 023678 181 TPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKET 260 (279)
Q Consensus 181 ~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~ 260 (279)
+||+++++|++++|+|+||+||+|+.++.+. .+++|++||+.+ ||.|...|+
T Consensus 161 ~pL~~~~gi~~i~v~t~~~~SGaG~~~~~~~--------------------~~~~ni~py~~~--------~e~k~~~E~ 212 (350)
T 2ep5_A 161 KPLIEIATKSKIIITTLQAVSGAGYNGISFM--------------------AIEGNIIPYIKG--------EEDKIAKEL 212 (350)
T ss_dssp GGGHHHHHTSEEEEEEEECGGGGCSSSSBHH--------------------HHTTCCBCCCTT--------HHHHHHHHH
T ss_pred HHHHHhcCCcEEEEEEEEecCcCCCCCCCCh--------------------HHhCCEEeccCC--------cchHHHHHH
Confidence 9999988899999999999999999865321 246899999865 789999999
Q ss_pred HHhcCC
Q 023678 261 RKIWVS 266 (279)
Q Consensus 261 ~kil~~ 266 (279)
+|+|+.
T Consensus 213 ~~~l~~ 218 (350)
T 2ep5_A 213 TKLNGK 218 (350)
T ss_dssp HHHTCE
T ss_pred HHHHhh
Confidence 999975
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-43 Score=328.11 Aligned_cols=213 Identities=21% Similarity=0.302 Sum_probs=171.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC---CCCceee-----eCCc-eeEEeec-CccCC-CCCcEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR---SAGKQLS-----FQDK-AYTVEEL-TEDSF-DGVDIALF 107 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~---s~G~~~~-----~~~~-~~~v~~~-d~~~~-~~~DvVf~ 107 (279)
|+||+|+|||||+|++|+++|.+| |.+++..+.+++ ++|+++. +.+. ++.+.++ +.+++ .++|+||+
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~--p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~ 81 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRH--PHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFL 81 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC--TTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhC--CCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEE
Confidence 479999999999999999999998 999999998888 9999876 3333 5677776 66667 89999999
Q ss_pred cCCCchhhhhHHHHHhCCCEEEEcCCCCCCCC-CC------------------ceeeccCCHHhhhccccCCCCCcEEEC
Q 023678 108 SAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE-NV------------------PLVIPEVNPEAMSGIKVGMGKGALIAN 168 (279)
Q Consensus 108 a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~-~v------------------plvvPevN~~~i~~~~~~~~~~~iVan 168 (279)
|+|++.+++++++++++|++|||+|++||+++ ++ .|++||+|+++++ +.++|||
T Consensus 82 a~p~~~s~~~~~~~~~~g~~vIDlSa~fR~~d~~v~~~wy~~~~~~p~l~~~~vyglPEvn~~~i~-------~~~iIan 154 (337)
T 3dr3_A 82 ATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLK-------EANLIAV 154 (337)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHTSSCCSCHHHHHHCEECCTTTCCHHHH-------TCSEEEC
T ss_pred CCChHHHHHHHHHHHHCCCEEEEcCCccccCCcccchhhccccccChhhhcceEEEccccCHHHhC-------CCCEEec
Confidence 99999999999999999999999999999953 43 4799999999998 5789999
Q ss_pred CCChHHHHHHhhhchhh--hcCccEE-EEEEeecccccChhhHH-HHHHHHHHHhcCCCCCccc---c---------ccc
Q 023678 169 PNCSTIICLMAATPLHR--RAKVTRM-VVSTYQAASGAGAAAME-ELELQTREVLEGKPPTCKI---F---------SQQ 232 (279)
Q Consensus 169 PgC~tt~l~laL~PL~~--~~~i~~v-~vtt~q~vSGaG~~~~~-El~~qt~~l~~g~~~~~~~---f---------~~~ 232 (279)
||||||+++++|+||++ .++++++ +|+||||+||+||++++ ++..++ |..+..... . ...
T Consensus 155 PgC~tt~~~l~L~PL~~~g~~~~~~i~~v~t~~g~SGaG~~~~~~~~~~~~----n~~py~~~~h~h~Pei~~~l~~~v~ 230 (337)
T 3dr3_A 155 PGCYPTAAQLALKPLIDADLLDLNQWPVINATSGVSGAGRKAAISNSFCEV----SLQPYGVFTHRHQPEIATHLGADVI 230 (337)
T ss_dssp CCHHHHHHHHHHHHHHHTTCBCTTSCCEEEEEECGGGGCSCCCSTTSGGGC----SEEECSTTTCTHHHHHHHHHTSCCE
T ss_pred CChHHHHHHHHHHHHHHcCccCCCceEEEEEeeccccCCcccccccccccc----ceEccCcccceechhHHhhhcCCEE
Confidence 99999999999999998 4678899 99999999999998865 444332 211111100 0 224
Q ss_pred cccccccCCCCcccCCChHHHHh-HHHHHHHhc
Q 023678 233 YAFNLFSHNAPVLENGYNEEEMK-MVKETRKIW 264 (279)
Q Consensus 233 iafN~iP~i~~~~~~g~t~eE~k-~~~E~~kil 264 (279)
+....+|..++++.+.|.+-+.. ..+|++++|
T Consensus 231 ft~~rvPv~rG~~~ti~~~l~~~~t~eev~~~l 263 (337)
T 3dr3_A 231 FTPHLGNFPRGILETITCRLKSGVTQAQVAQAL 263 (337)
T ss_dssp EEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHH
T ss_pred EEEEEecccccEEEEEEEEECCCCCHHHHHHHH
Confidence 67789999999988887543332 234566665
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-42 Score=323.25 Aligned_cols=215 Identities=19% Similarity=0.310 Sum_probs=175.4
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-----eCC---ceeEEeecCccCCCCCcE
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-----FQD---KAYTVEELTEDSFDGVDI 104 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-----~~~---~~~~v~~~d~~~~~~~Dv 104 (279)
|...|+++||+|+||||++|++++|+|.+| |.++++++.++++.|+.+. +.+ .++.+.+ .+.|.++|+
T Consensus 10 ~~~~M~~~kV~IiGAtG~iG~~llr~L~~~--p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~--~~~~~~vDv 85 (359)
T 1xyg_A 10 SVKPEKDIRIGLLGASGYTGAEIVRLLANH--PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK--DADFSTVDA 85 (359)
T ss_dssp -----CCEEEEEECCSSHHHHHHHHHHHTC--SSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG--GCCGGGCSE
T ss_pred ccccccCcEEEEECcCCHHHHHHHHHHHcC--CCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc--hhHhcCCCE
Confidence 555566789999999999999999999988 9999999999888887665 222 1233333 335678999
Q ss_pred EEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCC-------------------CCceeeccCCHHhhhccccCCCCCcE
Q 023678 105 ALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE-------------------NVPLVIPEVNPEAMSGIKVGMGKGAL 165 (279)
Q Consensus 105 Vf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~-------------------~vplvvPevN~~~i~~~~~~~~~~~i 165 (279)
||+|+|++.++++++.+ ++|++|||+|++||+++ +++|++||+|+++++ +.++
T Consensus 86 Vf~atp~~~s~~~a~~~-~aG~~VId~sa~~R~~~~~~y~~~y~~~~~~~~~l~~~vygvpE~n~~~i~-------~~~i 157 (359)
T 1xyg_A 86 VFCCLPHGTTQEIIKEL-PTALKIVDLSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEILREDIK-------KARL 157 (359)
T ss_dssp EEECCCTTTHHHHHHTS-CTTCEEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHHHHHHH-------TCSE
T ss_pred EEEcCCchhHHHHHHHH-hCCCEEEECCccccCCchhhhhhhhcCCcCChhhcCCceEECCccCHHHhc-------cCCE
Confidence 99999999999999999 99999999999999975 589999999999998 4789
Q ss_pred EECCCChHHHHHHhhhchhhhcCcc--EEEEEEeecccccChhh-----------------------HHHHHHHHHHHhc
Q 023678 166 IANPNCSTIICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAA-----------------------MEELELQTREVLE 220 (279)
Q Consensus 166 VanPgC~tt~l~laL~PL~~~~~i~--~v~vtt~q~vSGaG~~~-----------------------~~El~~qt~~l~~ 220 (279)
|||||||||+++++|+||+++++|+ +++|+|+||+||+|+++ .+|+.+++..++
T Consensus 158 IanpgC~tt~~~~~l~pL~~~~~i~~~~i~v~t~~~~SGaG~~~~~~~~~~~~~~ni~py~~~~h~h~pEi~~~l~~~~- 236 (359)
T 1xyg_A 158 VANPGCYPTTIQLPLVPLLKANLIKHENIIIDAKSGVSGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVA- 236 (359)
T ss_dssp EECCCHHHHHHHHHHHHHHHTTCBCSSSCEEEEEEEGGGGCSCCCGGGBHHHHTTCCEECSCSCCTHHHHHHHHHHHHH-
T ss_pred EECCCcHHHHHHHHHHHHHHcCCCCCCeEEEEEEEEccccCcccchhhhhHHHhcCeecccccccccHHHHHHHHHHhc-
Confidence 9999999999999999999999999 99999999999999975 378888888775
Q ss_pred CCCCCccccccccccccccCCCCcccCCChHHHHh-HHHHHHHhcC
Q 023678 221 GKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMK-MVKETRKIWV 265 (279)
Q Consensus 221 g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k-~~~E~~kil~ 265 (279)
|.+++. .+..+.+|..++++.+.|.+-++. ..+|++++|.
T Consensus 237 ~~~~~v-----~~t~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~ 277 (359)
T 1xyg_A 237 QSKVTV-----SFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLK 277 (359)
T ss_dssp TSCCCC-----EEECEEESSSSCEEEEEEEEBCTTCCHHHHHHHHH
T ss_pred CCCCCE-----EEEEEEecccceEEEEEEEEeCCCCCHHHHHHHHH
Confidence 333333 467899999999988887654432 3566777664
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-41 Score=316.29 Aligned_cols=198 Identities=36% Similarity=0.516 Sum_probs=164.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe-ecCCCCceeee--C----------CceeEEeecCccCC-C-CCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA-SKRSAGKQLSF--Q----------DKAYTVEELTEDSF-D-GVD 103 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~-s~~s~G~~~~~--~----------~~~~~v~~~d~~~~-~-~~D 103 (279)
++||+|+||||++|++++|+|.+| |.++++++. ++++.|+.+.. + +.++.+.+.+.++| . ++|
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~--p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 85 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADH--PMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVD 85 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC--SSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCC
T ss_pred cceEEEECcCCHHHHHHHHHHhcC--CCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCC
Confidence 379999999999999999999987 999999886 56677776531 1 12334444455556 5 899
Q ss_pred EEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhcccc---C-CCCCcEEECCCChHHHHHHh
Q 023678 104 IALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV---G-MGKGALIANPNCSTIICLMA 179 (279)
Q Consensus 104 vVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~---~-~~~~~iVanPgC~tt~l~la 179 (279)
+||+|+|++.++++++.++++|++|||+|++||+++++|+++||||++.+...+. + +|+.++|+|||||+|+++++
T Consensus 86 vV~~atp~~~~~~~a~~~~~aG~~VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~~iIanpgC~tt~~~l~ 165 (354)
T 1ys4_A 86 IVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVIT 165 (354)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEECCSTTTTCTTSCBCCHHHHGGGGGHHHHHHHHHCCSSEEEECCCHHHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEECCchhcCCCCCCccCcccCHHHhcChhhhhhhcccCCeEEECCCHHHHHHHHH
Confidence 9999999999999999999999999999999999988999999999887652110 0 01357999999999999999
Q ss_pred hhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHH
Q 023678 180 ATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKE 259 (279)
Q Consensus 180 L~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E 259 (279)
|+||+++++|++++++|+||+||+|+.++... .+++|++||+.+ ||.|...|
T Consensus 166 l~pL~~~~gi~~~~v~t~~~~SGaG~~~~~~~--------------------~~~~ni~py~~~--------~~~k~~~E 217 (354)
T 1ys4_A 166 LKPIMDKFGLEAVFIATMQAVSGAGYNGVPSM--------------------AILDNLIPFIKN--------EEEKMQTE 217 (354)
T ss_dssp HHHHHHHHCCSEEEEEEEBCSGGGCTTTSCHH--------------------HHTTCCBSCCTT--------HHHHHHHH
T ss_pred HHHHHHhcCCcEEEEEEEEEcCcCCcccccch--------------------HHhCCEEeccCc--------hhhHHHHH
Confidence 99999987799999999999999999965321 246899999865 78999999
Q ss_pred HHHhcCC
Q 023678 260 TRKIWVS 266 (279)
Q Consensus 260 ~~kil~~ 266 (279)
++|+|+.
T Consensus 218 i~~~l~~ 224 (354)
T 1ys4_A 218 SLKLLGT 224 (354)
T ss_dssp HHHHTSE
T ss_pred HHHHHhc
Confidence 9999975
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=310.30 Aligned_cols=215 Identities=17% Similarity=0.251 Sum_probs=170.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-----eCC-ceeEEeecCccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-----FQD-KAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-----~~~-~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
++||+|+||||++|++++|+|.+| |.++++++.++++.|+.+. +.+ .++.+.+++ +|.++|+||+|+|++
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~--p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~--~~~~vDvV~~a~g~~ 79 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSH--PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPE--KLEPADILVLALPHG 79 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC--TTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGG--GCCCCSEEEECCCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC--CCcEEEEEECchhhCchhHHhCchhcCcccccccchh--HhcCCCEEEEcCCcH
Confidence 589999999999999999999988 9999999998888887665 222 234444443 377899999999999
Q ss_pred hhhhhHHHHHhCCCEEEEcCCCCCCCC------------------CCceeeccCCHHhhhccccCCCCCcEEECCCChHH
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSAFRMVE------------------NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTI 174 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~~R~~~------------------~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt 174 (279)
.+++++++++++|++|||+|++||+++ +++|++||+|+++++ +.++|+|||||||
T Consensus 80 ~s~~~a~~~~~aG~~VId~Sa~~r~~~~~~y~~~y~~h~~~e~l~~~vygvpE~n~~~i~-------~~~iIanp~C~tt 152 (345)
T 2ozp_A 80 VFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYGEHPRPDLLGRFVYAVPELYREALK-------GADWIAGAGCNAT 152 (345)
T ss_dssp HHHHTHHHHHTTCSEEEECSSTTSCSCHHHHHHHHCCCSSGGGTTSSEECCHHHHHHHHH-------TCSEEECCCHHHH
T ss_pred HHHHHHHHHHHCCCEEEEcCccccCCChHHHHhhhccccchhhhccCcEeccccCHHHhh-------cCCEEeCCCcHHH
Confidence 999999999999999999999999975 689999999999998 4789999999999
Q ss_pred HHHHhhhchhhhcCcc--EEEEEEeecccccChhhHHHHH-HHHHHHh----cC-CCC--Cc------cccccccccccc
Q 023678 175 ICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELE-LQTREVL----EG-KPP--TC------KIFSQQYAFNLF 238 (279)
Q Consensus 175 ~l~laL~PL~~~~~i~--~v~vtt~q~vSGaG~~~~~El~-~qt~~l~----~g-~~~--~~------~~f~~~iafN~i 238 (279)
+++++|+||+++++|+ +++|+|+||+||+|+++++++. .++..-+ -+ ... +. .. ...+..+.+
T Consensus 153 ~~~~~l~pL~~~~~i~~~~i~v~t~~~~SGaG~~~~~~~~~~~~~~n~~py~~~~h~~~pei~~~l~~~~-~v~~~~~rv 231 (345)
T 2ozp_A 153 ATLLGLYPLLKAGVLKPTPIFVTLLISTSAGGAEASPASHHPERAGSIRVYKPTGHRHTAEVVENLPGRP-EVHLTAIAT 231 (345)
T ss_dssp HHHHHHHHHHHTTCBCSSCEEEEEEECSGGGCSSCCGGGCHHHHTTCCEEEECSCCTHHHHHHHTSSSCC-CEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEEEEEccccCccccccccchhhccccccCCCCCccChHhHHHHhCCCC-CeEEEEEEe
Confidence 9999999999999999 9999999999999999876552 3221100 00 000 00 01 235677889
Q ss_pred cCCCCcccCCChHHHHh-HHHHHHHhcC
Q 023678 239 SHNAPVLENGYNEEEMK-MVKETRKIWV 265 (279)
Q Consensus 239 P~i~~~~~~g~t~eE~k-~~~E~~kil~ 265 (279)
|..++++.+.|.+-++. ..+|++++|.
T Consensus 232 P~~~g~~~~i~~~l~~~~t~eei~~~~~ 259 (345)
T 2ozp_A 232 DRVRGILMTAQCFVQDGWSERDVWQAYR 259 (345)
T ss_dssp SCSSCEEEEEEEEBCTTCCHHHHHHHHH
T ss_pred ccccEEEEEEEEEeCCCCCHHHHHHHHH
Confidence 99999988877554432 3456666663
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=266.37 Aligned_cols=194 Identities=15% Similarity=0.218 Sum_probs=155.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe-------------ecCCCCce-----------eeeCCceeEEee-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA-------------SKRSAGKQ-----------LSFQDKAYTVEE- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~-------------s~~s~G~~-----------~~~~~~~~~v~~- 93 (279)
++||||+|+ |++|++++|+|.+|+||.++++++. +.+..|+. +.+.++.+.+..
T Consensus 1 ~ikVgInG~-G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~ 79 (337)
T 1rm4_O 1 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSD 79 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECC
T ss_pred CeEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEec
Confidence 379999999 9999999999999888999999887 66666652 112334444432
Q ss_pred cCcc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC
Q 023678 94 LTED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 94 ~d~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
.++. .|. ++|+||+|+|+..+++.+++++++|+++||+|++|| + ++|.+||+||++.++. +.+|||||
T Consensus 80 ~dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~r-~-d~p~~V~GVN~~~~~~------~~~IIsNa 151 (337)
T 1rm4_O 80 RNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGK-G-DIPTYVVGVNEEGYTH------ADTIISNA 151 (337)
T ss_dssp SCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB-S-SCCBCCTTTTGGGCCT------TCSEEECC
T ss_pred CChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECCccc-C-CCCeEeecCCHHHhCC------CCeEEECC
Confidence 2333 355 899999999999999999999999999999999999 4 5789999999988873 36899999
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCC
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
||||++++++|+||+++|+|+++.+||+|++||+ ++..+.. . +.. .-+++.++|++|++-+
T Consensus 152 sCtTn~lap~lk~L~~~fgI~~~~mtTvha~Tga-q~l~d~~----~-----~~~---r~~r~~a~NiiP~~tg------ 212 (337)
T 1rm4_O 152 SCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDAS----H-----RDL---RRARAACLNIVPTSTG------ 212 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTT-SCSSSCC----C-----SST---TTTSCTTTCCEEECCC------
T ss_pred ChHHHHHHHHHHHHHHhcCeeEEEEEEEEecCCc-cchhhcc----h-----hhh---ccchhhhcCcccccch------
Confidence 9999999999999999999999999999999999 7643310 0 000 0145789999999844
Q ss_pred hHHHHhHHHHHHHhcCC
Q 023678 250 NEEEMKMVKETRKIWVS 266 (279)
Q Consensus 250 t~eE~k~~~E~~kil~~ 266 (279)
+++++ +|+++.
T Consensus 213 --aakav----~kvlPe 223 (337)
T 1rm4_O 213 --AAKAV----ALVLPN 223 (337)
T ss_dssp --HHHHH----HHHCGG
T ss_pred --hhHHH----Hhhhhh
Confidence 77776 788743
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=271.45 Aligned_cols=194 Identities=15% Similarity=0.185 Sum_probs=159.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-----------------------eeeeCCceeEEe-ec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-----------------------QLSFQDKAYTVE-EL 94 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-----------------------~~~~~~~~~~v~-~~ 94 (279)
++||||+| +||+|++++|+|.+| |.++++.+.++...+. .+.+.++.+.+. +.
T Consensus 1 ~ikVgI~G-~G~iG~~l~R~l~~~--~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~ 77 (330)
T 1gad_O 1 TIKVGING-FGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAER 77 (330)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTC--SSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeEEEEEC-cCHHHHHHHHHHHcC--CCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcC
Confidence 46999999 599999999999988 9999999987644432 111122333333 33
Q ss_pred CccC--C--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 95 TEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 95 d~~~--~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
+++. | .++|+||+|+|++.+++++++++++|+++||+|++| ++++|.+||+||+++++ +.+||||||
T Consensus 78 dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~--~~~~p~~V~GvN~~~~~-------~~~iIsNps 148 (330)
T 1gad_O 78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS--KDNTPMFVKGANFDKYA-------GQDIVSNAS 148 (330)
T ss_dssp SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC--SSSCCBCCTTTTGGGCC-------SCSEEECCC
T ss_pred ChhhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCC--CCCCCeEeecCCHHHhC-------CCCEEEcCC
Confidence 3433 3 489999999999999999999999999999999999 55678999999999886 478999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCCh
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t 250 (279)
|||++++++|+||+++++|+++.|+|+|++||+ ++++++. ++ ....|++..++|++|+. +|++
T Consensus 149 Ctt~~lap~lkpL~~~~gI~~~~~ttvha~Tg~-q~~vd~~---------~~--~~~~~~r~~~~NiiP~~-----tg~a 211 (330)
T 1gad_O 149 CTTNCLAPLAKVINDNFGIIEGLMTTVHATTAT-QKTVDGP---------SH--KDWRGGRGASQNIIPSS-----TGAA 211 (330)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEEEEEEEECCCTT-SBSSSCC---------CS--SCGGGGSBTTTCCEEEE-----CCTT
T ss_pred hHHHHHHHHHHHHHHhcCeeEEEEEEEEecccc-ccccccc---------cc--CCCccccchhhCeEEcC-----CCcc
Confidence 999999999999999999999999999999999 7777643 21 12357778999999997 5899
Q ss_pred HHHHhHHHHHH
Q 023678 251 EEEMKMVKETR 261 (279)
Q Consensus 251 ~eE~k~~~E~~ 261 (279)
+|+.|+..|++
T Consensus 212 ~ei~kvlpel~ 222 (330)
T 1gad_O 212 KAVGKVLPELN 222 (330)
T ss_dssp TTHHHHSGGGT
T ss_pred hhHHHHHHHhc
Confidence 99998888876
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=261.29 Aligned_cols=190 Identities=17% Similarity=0.240 Sum_probs=150.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec-------------CCCCc----------eeeeCCceeEEe-ec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-------------RSAGK----------QLSFQDKAYTVE-EL 94 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~-------------~s~G~----------~~~~~~~~~~v~-~~ 94 (279)
|+||||+|+ ||+|++++|+|.+| |.++++++.+. +..|+ .+.+.+.++.+. +.
T Consensus 1 mikVgI~G~-G~iGr~l~R~l~~~--~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~ 77 (334)
T 3cmc_O 1 AVKVGINGF-GRIGRNVFRAALKN--PDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAER 77 (334)
T ss_dssp CEEEEEESC-SHHHHHHHHHHTTC--TTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeEEEEECC-CHHHHHHHHHHhCC--CCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecC
Confidence 479999999 99999999999988 99999998765 22332 122244556665 44
Q ss_pred CccC--CC--CCcEEEecCCCchhhhhHHHHHhCCC--EEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEEC
Q 023678 95 TEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIAN 168 (279)
Q Consensus 95 d~~~--~~--~~DvVf~a~g~~~s~~~~~~~~~aG~--~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVan 168 (279)
+++. |. ++|+||+|+|++.+++++++++++|+ +|||++++ +++|++|||||+++++. + ..+||||
T Consensus 78 dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~pa~----d~~p~~V~eVN~~~i~~-~----~~~IIsN 148 (334)
T 3cmc_O 78 DPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAK----NEDITIVMGVNQDKYDP-K----AHHVISN 148 (334)
T ss_dssp SGGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB----SCSEECCTTTSGGGCCT-T----TCCEEEC
T ss_pred ChhhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCCCc----cCCCEeccccCHHHhCc-c----CCeEEEC
Confidence 5433 54 89999999999999999999999999 99999987 35789999999999872 0 2689999
Q ss_pred CCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCC
Q 023678 169 PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (279)
Q Consensus 169 PgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g 248 (279)
|||||++++++|+||+++++|+++.|+|+|++||+++.. .+. -....|+++.++|++|+. +|
T Consensus 149 psCttn~lap~lkpL~~~~gI~~~~mtTvha~Sg~q~~~------------d~~-~~~~r~~r~~a~NiiP~~-----tg 210 (334)
T 3cmc_O 149 ASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRIL------------DLP-HKDLRRARAAAESIIPTT-----TG 210 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSS------------SCC-CSSTTTTSBTTTCCEEEE-----CS
T ss_pred CChHHHHHHHHHHHHHHhcCceeeeEEEEEeccchhhhc------------ccc-ccccccchhhhhCEEeec-----cC
Confidence 999999999999999999999999999999999975332 121 112346778899999998 55
Q ss_pred ChHHHHhHHHHHHHhcC
Q 023678 249 YNEEEMKMVKETRKIWV 265 (279)
Q Consensus 249 ~t~eE~k~~~E~~kil~ 265 (279)
+++ |++|+|+
T Consensus 211 ~a~-------ei~kvlp 220 (334)
T 3cmc_O 211 AAK-------AVALVLP 220 (334)
T ss_dssp HHH-------HHHHHCG
T ss_pred ccc-------chhhhCh
Confidence 554 4667774
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=254.09 Aligned_cols=189 Identities=16% Similarity=0.240 Sum_probs=149.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec-------------CCCCc----------eeeeCCceeEEe-ecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-------------RSAGK----------QLSFQDKAYTVE-ELT 95 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~-------------~s~G~----------~~~~~~~~~~v~-~~d 95 (279)
+||||+|+ ||+|++++|+|.+|+.|.++++++.+. +..|+ .+.+.+.++.+. +.+
T Consensus 1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d 79 (332)
T 1hdg_O 1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD 79 (332)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence 58999999 999999999998765588999988763 23343 122244556665 345
Q ss_pred ccC--CC--CCcEEEecCCCchhhhhHHHHHhCCC--EEEEcCCCCCCCCCCc-eeeccCCHHhhhccccCCCCCcEEEC
Q 023678 96 EDS--FD--GVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGALIAN 168 (279)
Q Consensus 96 ~~~--~~--~~DvVf~a~g~~~s~~~~~~~~~aG~--~VIDlS~~~R~~~~vp-lvvPevN~~~i~~~~~~~~~~~iVan 168 (279)
++. |. ++|+||+|+|++.+++++++++++|+ +|||++++ ++| ++|||||+++++. +.+||||
T Consensus 80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~a~-----d~p~~~V~eVN~~~i~~------~~~iIsN 148 (332)
T 1hdg_O 80 PSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAK-----GEDITVVIGCNEDQLKP------EHTIISC 148 (332)
T ss_dssp GGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB-----SCSEECCTTTTGGGCCT------TCCEEEC
T ss_pred hHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCCCC-----CCCceEEeccCHHHhCC------CCcEEEC
Confidence 443 44 89999999999999999999999999 99999986 478 9999999999873 3689999
Q ss_pred CCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCC
Q 023678 169 PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (279)
Q Consensus 169 PgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g 248 (279)
|||||++++++|+||+++++|+++.|+|+|++||+++. ++ + +-....+++..++|++|+. +|
T Consensus 149 psCttn~lap~lkpL~~~~gI~~~~~ttvha~Sg~q~~-~d-----------~-~~~~~~~~r~~a~NiiP~~-----tg 210 (332)
T 1hdg_O 149 ASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQRV-LD-----------L-PHKDLRRARAAAVNIIPTT-----TG 210 (332)
T ss_dssp CCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBS-SS-----------C-CCSSTTTTSBGGGCCEEEC-----CT
T ss_pred CccHHHHHHHHHHHHHHhcCeeEeEEEEEEeccchhhh-hc-----------C-cccccccchhHhhCccccc-----CC
Confidence 99999999999999999999999999999999998643 11 1 1112246678899999998 55
Q ss_pred ChHHHHhHHHHHHHhcC
Q 023678 249 YNEEEMKMVKETRKIWV 265 (279)
Q Consensus 249 ~t~eE~k~~~E~~kil~ 265 (279)
+++ |++|+|+
T Consensus 211 ~a~-------ei~kvLp 220 (332)
T 1hdg_O 211 AAK-------AVALVVP 220 (332)
T ss_dssp HHH-------HHHHHCG
T ss_pred ccc-------chhhhCc
Confidence 555 4566764
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-32 Score=257.20 Aligned_cols=194 Identities=16% Similarity=0.177 Sum_probs=153.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec-CCCCc-----------------------eeeeCCceeEEe-e
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK-----------------------QLSFQDKAYTVE-E 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~-~s~G~-----------------------~~~~~~~~~~v~-~ 93 (279)
++||||+|+ |++|++++|+|.+| |.++++++.++ ...++ .+...++.+.+. +
T Consensus 3 ~ikVgI~G~-G~iGr~~~R~l~~~--~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~ 79 (335)
T 1u8f_O 3 KVKVGVNGF-GRIGRLVTRAAFNS--GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQE 79 (335)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHH--CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred ceEEEEEcc-CHHHHHHHHHHHcC--CCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEec
Confidence 579999995 99999999999988 99999999874 22221 111222333333 2
Q ss_pred cCccC--C--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC
Q 023678 94 LTEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 94 ~d~~~--~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
.+++. | .++|+||+|+|+..+++++++++++|+++||+|++ +++.|.+|||||+++++. +.+|||||
T Consensus 80 ~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap---~~~~p~~V~gvN~~~~~~------~~~iIsnp 150 (335)
T 1u8f_O 80 RDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP---SADAPMFVMGVNHEKYDN------SLKIISNA 150 (335)
T ss_dssp SSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSC---CSSSCBCCTTTTGGGCCT------TCSEEECC
T ss_pred CCHHHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccC---CCCCCeEEeccCHHHhCC------CCCEEECC
Confidence 23333 4 48999999999999999999999999999999998 445789999999999873 36899999
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCC
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
||||++++++|+||+++++|++..++|+|++||+ ++++++.. + +...|+++.++|++|+. +|+
T Consensus 151 sCtt~~l~~~lkpL~~~~gI~~~~~tt~~a~Tg~-q~~vd~~~--------~---~~~~~~r~~~~NiiP~~-----tg~ 213 (335)
T 1u8f_O 151 SCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITAT-QKTVDGPS--------G---KLWRDGRGALQNIIPAS-----TGA 213 (335)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTT-SBSSSCCC--------T---TCGGGGSBTTTCCEEEE-----CCT
T ss_pred ChHHHHHHHHHHHHHHhCCcceeEEEEEeccccC-cccccccc--------c---cccccchhhhcCceecc-----CCh
Confidence 9999999999999999999999999999999999 44444320 0 12246678899999997 578
Q ss_pred hHHHHhHHHHHH
Q 023678 250 NEEEMKMVKETR 261 (279)
Q Consensus 250 t~eE~k~~~E~~ 261 (279)
++|+.|+..|++
T Consensus 214 a~ei~kvlpel~ 225 (335)
T 1u8f_O 214 AKAVGKVIPELN 225 (335)
T ss_dssp TTTHHHHSGGGT
T ss_pred hHHHHHHHHHhC
Confidence 888888777765
|
| >1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=247.27 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=150.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeec-------------CCC----------CceeeeCCceeEEee-c
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASK-------------RSA----------GKQLSFQDKAYTVEE-L 94 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~-------------~s~----------G~~~~~~~~~~~v~~-~ 94 (279)
+||||.|+ |.|||.++|.|.+++ .|.++++++... +.. |+.+.+.++.+.+.. .
T Consensus 2 ikVaInGf-GrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~~~~ 80 (335)
T 1obf_O 2 IRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANR 80 (335)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEECCEEEEEEEcC
Confidence 69999997 999999999988762 368899888652 111 333444566666653 3
Q ss_pred Cc--cCCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCc-eeeccCCHHhhhccccCCCCCcEEECC
Q 023678 95 TE--DSFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 95 d~--~~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vp-lvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
++ ..|. ++|+||+|+|...++++++.++++|++.|.+|++. ++++| ++|||||++.++. +.+|||||
T Consensus 81 dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps--~~dvp~~vV~gVN~~~~~~------~~~IISNa 152 (335)
T 1obf_O 81 NPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPG--GADVDATVVYGVNHGTLKS------TDTVISNA 152 (335)
T ss_dssp CGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCC--CTTSSEECCTTTSGGGCCT------TCCEEECC
T ss_pred CcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEECCcc--cCCCCceEEccCCHHHhCc------CccEEeCC
Confidence 33 3465 89999999999999999999999999655566554 44689 9999999999873 46899999
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCC
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
||+|++|+++|+||+++|+|+++.|||||++||..+. + .|.. ..-.+++++++|+||++ +|+
T Consensus 153 sCTTn~Lap~lk~L~d~fGI~~~~mTTvha~T~~q~~-~-----------d~~~-~d~r~~r~~a~NiIP~~-----tGa 214 (335)
T 1obf_O 153 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVL-T-----------DVYH-EDLRRARSATMSMIPTK-----TGA 214 (335)
T ss_dssp CHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCS-S-----------CCCC-SSTTTTSCTTTCCEEEE-----CCH
T ss_pred cHHHHHHHHHHHHHHHhcCeeEEEEEEEchhhhhhhh-h-----------cccc-cccccccchhhccccCC-----Ccc
Confidence 9999999999999999999999999999999996422 1 2211 12346789999999998 565
Q ss_pred hHHHHhHHHHHHHhcCCCCc
Q 023678 250 NEEEMKMVKETRKIWVSFKM 269 (279)
Q Consensus 250 t~eE~k~~~E~~kil~~~~~ 269 (279)
++ |++||| |+|
T Consensus 215 ak-------av~kVl--P~L 225 (335)
T 1obf_O 215 AA-------AVGDVL--PEL 225 (335)
T ss_dssp HH-------HHHHHC--GGG
T ss_pred hH-------hHhhhc--ccc
Confidence 55 457777 445
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-32 Score=257.95 Aligned_cols=194 Identities=14% Similarity=0.225 Sum_probs=149.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee-cCCCC-------------c----------eeeeCCceeEEe-e
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS-KRSAG-------------K----------QLSFQDKAYTVE-E 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s-~~s~G-------------~----------~~~~~~~~~~v~-~ 93 (279)
++||||+|+ |++|++++|+|.+| |.++++++.+ ....+ + .+...++++.+. +
T Consensus 17 ~ikVgI~G~-G~iGr~llR~l~~~--p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 93 (354)
T 3cps_A 17 QGTLGINGF-GRIGRLVLRACMER--NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQA 93 (354)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTC--SSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECC
T ss_pred ceEEEEECC-CHHHHHHHHHHHcC--CCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEec
Confidence 579999999 99999999999988 9999999987 33322 1 111223344343 2
Q ss_pred cCccC--C--CCCcEEEecCCCchhhhhHHHHHhCCC--EEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEE
Q 023678 94 LTEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIA 167 (279)
Q Consensus 94 ~d~~~--~--~~~DvVf~a~g~~~s~~~~~~~~~aG~--~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVa 167 (279)
.+++. | .++|+||+|+|+..+++++++++++|+ +|||++++ +++|.+||+||++.++.. ..+|||
T Consensus 94 ~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~pad----d~~p~~V~GVN~~~~~~~-----~~~IIS 164 (354)
T 3cps_A 94 KDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPK----DNVPMYVMGVNNTEYDPS-----KFNVIS 164 (354)
T ss_dssp SCGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCS----SCCCBCCTTTTGGGCCTT-----TCSEEE
T ss_pred CChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCCC----CCCCEEEeccCHHHhCcC-----CCcEEE
Confidence 34443 4 589999999999999999999999999 89999985 447899999999998730 268999
Q ss_pred CCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccC
Q 023678 168 NPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (279)
Q Consensus 168 nPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~ 247 (279)
||||||++++++|+||+++++|++..|+|+|++||. ++++++..+|.+.+ +. .+..++|++|+. +
T Consensus 165 NpsCtTn~lap~lkpL~~~~gI~~g~mtTvha~Tg~-q~~vd~~~~~~k~~--------r~-~r~aa~NiiP~~-----t 229 (354)
T 3cps_A 165 NASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTAN-QLTVDGPSKGGKDW--------RA-GRCAGNNIIPAS-----T 229 (354)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTT-SCSSSCCCCC--CC--------GG-GSCTTSCCEEEE-----C
T ss_pred CCCcHHHHHHHHHHHHHHhCCeeEEEEEEEeccccc-chhhhccchhcccc--------cc-ccchhccEEecC-----c
Confidence 999999999999999999999999999999999999 77777543222211 11 346789999997 5
Q ss_pred CChHHHHhHHHH
Q 023678 248 GYNEEEMKMVKE 259 (279)
Q Consensus 248 g~t~eE~k~~~E 259 (279)
|+++|+.|+.-|
T Consensus 230 G~akei~kvlp~ 241 (354)
T 3cps_A 230 GAAKAVGKVIPA 241 (354)
T ss_dssp CHHHHHHHHSGG
T ss_pred CHHHHHHHHHHh
Confidence 666666665433
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=248.84 Aligned_cols=187 Identities=16% Similarity=0.217 Sum_probs=145.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe-------------ecCCCCc----------eeeeCCceeEEee-cC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA-------------SKRSAGK----------QLSFQDKAYTVEE-LT 95 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~-------------s~~s~G~----------~~~~~~~~~~v~~-~d 95 (279)
+||||+|+ |++|++++|+|.+| .++++++. +.+..|+ .+.+.++.+.+.. .+
T Consensus 1 ikVgInG~-G~IGr~vlr~l~~~---~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 76 (331)
T 2g82_O 1 MKVGINGF-GRIGRQVFRILHSR---GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKD 76 (331)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH---TCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhC---CCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCC
Confidence 58999997 99999999999887 45566543 3455664 2334455666652 24
Q ss_pred c--cCCC--CCcEEEecCCCchhhhhHHHHHhCCC--EEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC
Q 023678 96 E--DSFD--GVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 96 ~--~~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~--~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
+ ..|. ++|+||+|+|+..+++++++++++|+ +|||++++ +++|++|||||+++++. + ..+||+||
T Consensus 77 p~~l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps~----d~~p~vV~gVN~~~~~~-~----~~~IIsna 147 (331)
T 2g82_O 77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAK----GEDITIVMGVNHEAYDP-S----RHHIISNA 147 (331)
T ss_dssp GGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB----SCSEECCTTTTGGGCCT-T----TCCEEECC
T ss_pred hhhCcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCCc----CCCCEEeeccCHHHhCc-C----CCCEEECC
Confidence 4 3465 89999999999999999999999999 89999987 35789999999999873 0 26899999
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCC
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
||+|++++++|+||+++|+|+++.++|+|++||+ .+.++.. ...-.+++++++|+||++ +|+
T Consensus 148 sCtTn~lap~lk~L~~~fgI~~~~mtTvha~Tg~-q~~~d~~------------~~d~r~~r~~a~NiIP~~-----tGa 209 (331)
T 2g82_O 148 SCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTND-QRLLDLP------------HKDLRRARAAAINIIPTT-----TGA 209 (331)
T ss_dssp CHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTT-SBSSSCC------------CSSTTTTSBGGGCCEEEC-----CCH
T ss_pred ChHHHHHHHHHHHHHHhcCccEEEEEEEeecccc-cchhccc------------cccccccchhhhCccccC-----CCc
Confidence 9999999999999999999999999999999997 5443311 111235678999999998 455
Q ss_pred hHHHHhHHHHHHHhc
Q 023678 250 NEEEMKMVKETRKIW 264 (279)
Q Consensus 250 t~eE~k~~~E~~kil 264 (279)
.+ |++|||
T Consensus 210 ak-------av~kIl 217 (331)
T 2g82_O 210 AK-------ATALVL 217 (331)
T ss_dssp HH-------HHTTTC
T ss_pred hh-------hhhhhH
Confidence 55 446666
|
| >2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=249.55 Aligned_cols=195 Identities=15% Similarity=0.235 Sum_probs=150.6
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec----C---------CC-----------CceeeeCCceeEEe
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----R---------SA-----------GKQLSFQDKAYTVE 92 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~----~---------s~-----------G~~~~~~~~~~~v~ 92 (279)
|..+||+|.| +|.|||.++|.+.++ |.++++++... + +. |..+.+.++.+.+.
T Consensus 9 ~~~~kv~ING-fGrIGr~v~ra~~~~--~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~~~v~~~~~~l~v~Gk~i~v~ 85 (345)
T 2b4r_O 9 MAATKLGING-FGRIGRLVFRAAFGR--KDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVF 85 (345)
T ss_dssp --CEEEEEEC-CSHHHHHHHHHHHTC--SSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEE
T ss_pred hhheEEEEeC-CchHHHHHHHHHhhC--CCcEEEEEcCCCCChHHHHHHhccCCCCCcCCCCEEEcCCEEEECCEEEEEE
Confidence 3457999999 999999999999988 99999999761 1 11 12233345556665
Q ss_pred e-cCcc--CCC--CCcEEEecCCCchhhhhHHHHHhCCC--EEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcE
Q 023678 93 E-LTED--SFD--GVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGAL 165 (279)
Q Consensus 93 ~-~d~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~--~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~i 165 (279)
. .+++ .|. ++|+||+|+|...+++.++.++++|+ +|||++++ +++|++|||||++.++. +.+|
T Consensus 86 ~~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsaps~----~dvplvV~gVN~~~~~~------~~~I 155 (345)
T 2b4r_O 86 AEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPK----DDTPIYVMGINHHQYDT------KQLI 155 (345)
T ss_dssp CCSSGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS----SSCCBCCTTTTGGGCCT------TCCE
T ss_pred EcCCcccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCCCC----CCCCEEEecCCHHHhCC------CCCE
Confidence 3 3433 354 89999999999999999999999999 58887764 45899999999998873 4689
Q ss_pred EECCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCC--CccccccccccccccCCCC
Q 023678 166 IANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPP--TCKIFSQQYAFNLFSHNAP 243 (279)
Q Consensus 166 VanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~--~~~~f~~~iafN~iP~i~~ 243 (279)
||||||+|++|+++|+||+++|+|+++.+||||++||+++. +.|... +...+++++++|+||++
T Consensus 156 ISNasCTTn~Lap~lk~L~d~fGI~~~~mTTvhA~T~~q~~------------~d~~~~~~~d~r~~r~~a~NiIP~~-- 221 (345)
T 2b4r_O 156 VSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHASTANQLV------------VDGPSKGGKDWRAGRCALSNIIPAS-- 221 (345)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCTTSCS------------SSCCCGGGCCGGGGSCTTTCCEEEE--
T ss_pred EECCchHHHHHHHHHHHHHHhcCeeEEEEEEeehhhchhhh------------hcccccccCCCccccchhhccCcCC--
Confidence 99999999999999999999999999999999999998532 122110 12357889999999998
Q ss_pred cccCCChHHHHhHHHHHHHhcCCCCcc
Q 023678 244 VLENGYNEEEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 244 ~~~~g~t~eE~k~~~E~~kil~~~~~~ 270 (279)
+|+++ |++||| |+|.
T Consensus 222 ---tGaak-------av~kVl--P~L~ 236 (345)
T 2b4r_O 222 ---TGAAK-------AVGKVL--PELN 236 (345)
T ss_dssp ---CCHHH-------HHHHHS--GGGT
T ss_pred ---CchHH-------HHHHhh--hhcC
Confidence 45444 567887 4453
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=243.10 Aligned_cols=190 Identities=17% Similarity=0.266 Sum_probs=144.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHc---CCCCceEEEEEeec-------------CCCCc----------eeeeCCceeEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSD---RDFPYRSIKMLASK-------------RSAGK----------QLSFQDKAYTVE 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~---~~~p~~~l~~l~s~-------------~s~G~----------~~~~~~~~~~v~ 92 (279)
++||||+|+ |++|++++|+|.+ | |.++++++.+. +..|+ .+...+..+.+.
T Consensus 2 ~ikVgI~G~-G~iGr~l~r~l~~~~~~--~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~ 78 (339)
T 2x5j_O 2 TVRVAINGF-GRIGRNVVRALYESGRR--AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVL 78 (339)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTSGG--GTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEE
T ss_pred CeEEEEECc-CHHHHHHHHHHHcCCCC--CCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEE
Confidence 379999998 9999999999998 7 99999988764 11222 222234455554
Q ss_pred e-cCccC--CC--CCcEEEecCCCchhhhhHHHHHhCCCE--EEEcCCCCCCCCCCc-eeeccCCHHhhhccccCCCCCc
Q 023678 93 E-LTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSI--VVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGA 164 (279)
Q Consensus 93 ~-~d~~~--~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~--VIDlS~~~R~~~~vp-lvvPevN~~~i~~~~~~~~~~~ 164 (279)
. .+++. |. ++|+||+|+|+..+++.+++++++|++ |||+++++ ++| .+|||||+++++. ..+
T Consensus 79 ~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~ad~----d~p~~~V~gvN~~~~~~------~~~ 148 (339)
T 2x5j_O 79 HERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSN----DLDATVVYGVNQDQLRA------EHR 148 (339)
T ss_dssp CCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCCT----TSSEECCTTTSGGGCCT------TCC
T ss_pred ecCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccccC----CCCceeecccCHHHhcC------CCC
Confidence 2 23333 44 899999999999999999999999997 89999976 367 8999999999873 368
Q ss_pred EEECCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCc
Q 023678 165 LIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPV 244 (279)
Q Consensus 165 iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~ 244 (279)
|||||||+|++++++|+||+++++|+++.++|+|++||+++. ++... . + -.++++.++|++|+.-+
T Consensus 149 iIsnpsCttn~lap~lkpL~~~~gI~~~~~ttvha~Tg~q~~-~d~~~---~--------d-~r~~r~a~~NiiP~~tg- 214 (339)
T 2x5j_O 149 IVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIHSAMHDQQV-IDAYH---P--------D-LRRTRAASQSIIPVDTK- 214 (339)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCC-----------------------C-TTTTSCCCCCCEEECCC-
T ss_pred EEECCCcHHHHHHHHHHHHHHccCcceeeEEEEEeccccccc-ccccc---c--------c-ccchhhHHhCcccccCC-
Confidence 999999999999999999999999999999999999998643 33321 1 1 12566789999999743
Q ss_pred ccCCChHHHHhHHHHHHHhcCC
Q 023678 245 LENGYNEEEMKMVKETRKIWVS 266 (279)
Q Consensus 245 ~~~g~t~eE~k~~~E~~kil~~ 266 (279)
...|++|+|+.
T Consensus 215 -----------~a~ei~kvlp~ 225 (339)
T 2x5j_O 215 -----------LAAGITRFFPQ 225 (339)
T ss_dssp -----------HHHHHHHHSGG
T ss_pred -----------hHHHHHHHHHH
Confidence 24588899844
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-32 Score=253.00 Aligned_cols=188 Identities=15% Similarity=0.132 Sum_probs=144.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC------CCce---ee--eCC-------ceeEEeecCccCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQ---LS--FQD-------KAYTVEELTEDSFD 100 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s------~G~~---~~--~~~-------~~~~v~~~d~~~~~ 100 (279)
|+||||+|+ |++|++++|+|.+| |.++++.+.++.. +|+. +. +.+ ..+.+.....+.+.
T Consensus 1 mikVgIiGa-G~iG~~l~r~L~~~--~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~ 77 (337)
T 1cf2_P 1 MKAVAINGY-GTVGKRVADAIAQQ--DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD 77 (337)
T ss_dssp CEEEEEECC-STTHHHHHHHHHTS--SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred CeEEEEEeE-CHHHHHHHHHHHcC--CCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhc
Confidence 479999999 99999999999988 9999999876541 1111 00 000 01111110011235
Q ss_pred CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCC--ceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHH
Q 023678 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENV--PLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLM 178 (279)
Q Consensus 101 ~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~v--plvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~l 178 (279)
++|+||+|+|++.+++++++++++|++|||++++ ++++ |+++||+|+++++ +.++|+||||||+++++
T Consensus 78 ~vDvV~~atp~~~~~~~a~~~l~aG~~VId~sp~---~~d~~~~~~V~gvN~e~~~-------~~~iIanp~C~tt~l~~ 147 (337)
T 1cf2_P 78 EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE---KHEDIGLSFNSLSNYEESY-------GKDYTRVVSCNTTGLCR 147 (337)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHHTCCEEECTTS---CHHHHSCEECHHHHGGGGT-------TCSEEEECCHHHHHHHH
T ss_pred CCCEEEECCCchhhHHHHHHHHHcCCEEEEecCC---CCccCCCeEEeeeCHHHhc-------CCCEEEcCCcHHHHHHH
Confidence 8999999999999999999999999999999998 3355 8999999999987 46899999999999999
Q ss_pred hhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccC-CCCcccCCChHHHHhHH
Q 023678 179 AATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH-NAPVLENGYNEEEMKMV 257 (279)
Q Consensus 179 aL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~-i~~~~~~g~t~eE~k~~ 257 (279)
+|+||+++++|+++.++|+|++||. ..+.+++++|++|+ ++.+ ++ -.
T Consensus 148 ~l~pL~~~~gI~~~~vtt~~a~s~p-----------------------~~~~~~~~~NiiP~~i~~~--~~-------~~ 195 (337)
T 1cf2_P 148 TLKPLHDSFGIKKVRAVIVRRGADP-----------------------AQVSKGPINAIIPNPPKLP--SH-------HG 195 (337)
T ss_dssp HHHHHHHHHCEEEEEEEEEEESSCT-----------------------TCTTCCCSSCCEESSSSSS--CT-------HH
T ss_pred HHHHHHHhcCcceeEEEEEEEeecC-----------------------CccccchhcCEEeccCCCC--Cc-------ch
Confidence 9999999999999999999988881 12344678999999 8663 22 23
Q ss_pred HHHHHhcCCCCccEEee
Q 023678 258 KETRKIWVSFKMNFFVS 274 (279)
Q Consensus 258 ~E~~kil~~~~~~v~~~ 274 (279)
.|++|+| .++|+-+
T Consensus 196 ~ei~kil---~l~v~~t 209 (337)
T 1cf2_P 196 PDVKTVL---DINIDTM 209 (337)
T ss_dssp HHHHTTS---CCCEEEE
T ss_pred HHHHhhh---eeEEEEE
Confidence 8999999 3554444
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-31 Score=247.48 Aligned_cols=189 Identities=12% Similarity=0.083 Sum_probs=144.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCcee---------------------eeCCceeEEeecCcc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL---------------------SFQDKAYTVEELTED 97 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~---------------------~~~~~~~~v~~~d~~ 97 (279)
|+||||+|+ |++|+.++|.|.+| |.++++++.... ..... .+.+..+.+.....+
T Consensus 2 mikVgI~G~-G~IGr~v~r~l~~~--~~~evvaV~d~~-~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~ 77 (343)
T 2yyy_A 2 PAKVLINGY-GSIGKRVADAVSMQ--DDMEVIGVTKTK-PDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILD 77 (343)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHS--SSEEEEEEEESS-CSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred ceEEEEECC-CHHHHHHHHHHHhC--CCceEEEEecCC-HHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHH
Confidence 479999998 99999999999988 899999987642 22210 010111222211122
Q ss_pred CCCCCcEEEecCCCchhhhhHH-HHHhCCCEEEEcCCCCCCCCCCc-eeeccCCHHhhhccccCCCCCcEEECCCChHHH
Q 023678 98 SFDGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGALIANPNCSTII 175 (279)
Q Consensus 98 ~~~~~DvVf~a~g~~~s~~~~~-~~~~aG~~VIDlS~~~R~~~~vp-lvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~ 175 (279)
.+.++|+||+|+|.+.++++++ +++++|++|||.++ +.++++| +++||||+++++ +.++|+||||+|++
T Consensus 78 ~~~~vDiV~eatg~~~s~~~a~~~~l~aG~~VI~sap--~~~d~vp~~vV~gvN~~~~~-------~~~iIsn~sCtT~~ 148 (343)
T 2yyy_A 78 IIEDADIVVDGAPKKIGKQNLENIYKPHKVKAILQGG--EKAKDVEDNFNALWSYNRCY-------GKDYVRVVSCNTTG 148 (343)
T ss_dssp TGGGCSEEEECCCTTHHHHHHHHTTTTTTCEEEECTT--SCGGGSSEEECTTTTHHHHT-------TCSEEEECCHHHHH
T ss_pred hccCCCEEEECCCccccHHHHHHHHHHCCCEEEECCC--ccccCCCceEEcccCHHHhc-------cCCEEeccchhhHH
Confidence 3458999999999999999996 99999999998544 4434488 999999999997 35899999999999
Q ss_pred HHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccC-CCCcccCCChHHHH
Q 023678 176 CLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH-NAPVLENGYNEEEM 254 (279)
Q Consensus 176 l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~-i~~~~~~g~t~eE~ 254 (279)
++++|+||++.|+|+++.++|||++||+|+. .+++++|+||+ ++. .+|+++
T Consensus 149 lap~lk~L~~~fgI~~~~vtT~~a~sg~~~~-----------------------~r~~~~NiiP~~i~~--~tg~~k--- 200 (343)
T 2yyy_A 149 LCRILYAINSIADIKKARIVLVRRAADPNDD-----------------------KTGPVNAITPNPVTV--PSHHGP--- 200 (343)
T ss_dssp HHHHHHHHHTTSEEEEEEEEEEEESSCTTCS-----------------------SCCCSSCCEESSSSS--SCTHHH---
T ss_pred HHHHHHHHHHHcCceEEEEEeeeeccCcCcc-----------------------hhhHHhcccCCCCCC--CCcchH---
Confidence 9999999999999999999999999995411 23679999999 644 777655
Q ss_pred hHHHHHHHhcCCCCcc--EEee
Q 023678 255 KMVKETRKIWVSFKMN--FFVS 274 (279)
Q Consensus 255 k~~~E~~kil~~~~~~--v~~~ 274 (279)
|++|||+ ++. ++-+
T Consensus 201 ----~~~kilp--~l~gkl~~~ 216 (343)
T 2yyy_A 201 ----DVVSVVP--EFEGKILTS 216 (343)
T ss_dssp ----HHHHHCG--GGTTSEEEE
T ss_pred ----HHHHhhh--ccccceeeE
Confidence 6678984 455 4443
|
| >3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=240.56 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=151.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-----------------------CCceeeeCCceeEEe-ec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-----------------------AGKQLSFQDKAYTVE-EL 94 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-----------------------~G~~~~~~~~~~~v~-~~ 94 (279)
++||+|.| .|.+||.++|.+.++ +.++++++...-. .|..+.+.++.+.+. +-
T Consensus 4 ~~kv~ING-fGrIGr~v~R~~~~~--~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~ 80 (338)
T 3lvf_P 4 AVKVAING-FGRIGRLAFRRIQEV--EGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEP 80 (338)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTS--TTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCS
T ss_pred cEEEEEEC-CCcHHHHHHHHHHHC--CCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEEcCCEEEECCEEEEEEEec
Confidence 47999999 899999999999888 7899999864211 011233345566663 33
Q ss_pred Cc--cCCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 95 TE--DSFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 95 d~--~~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
++ ..|. ++|+||+|+|...+++.++.++++|++.|++|++. .+++|++|||||++.++. +.+|||||+
T Consensus 81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps--~~d~p~vV~gVN~~~~~~------~~~IISNas 152 (338)
T 3lvf_P 81 DASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPA--TGDLKTIVFNTNHQELDG------SETVVSGAS 152 (338)
T ss_dssp CGGGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCC--BSSCEECCTTTTGGGCCS------CCSEEECCC
T ss_pred ccccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCC--CCCCCEEeccCCHHHcCc------cCCeEecCc
Confidence 33 3465 89999999999999999999999999666666665 357899999999999873 578999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCC-ccccccccccccccCCCCcccCCC
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPT-CKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~-~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
|+|++++++|+||+++|+|+++.++|||++||.++- +.|..-+ .-.+++++++|+||++ +|+
T Consensus 153 CTTn~Lap~lkvL~d~fGI~~g~mTTvha~T~~q~~------------~D~~~~k~d~r~~r~aa~NiIP~~-----tGa 215 (338)
T 3lvf_P 153 CTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNT------------QDAPHRKGDKRRARAAAENIIPNS-----TGA 215 (338)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCS------------SSCCCTTCCTTTTSCGGGCCEEEE-----CST
T ss_pred hhhhhhHHHHHHHHHhcCEEEEEEeeeccccchhhh------------hcCCccccccccchhhhceEEeCC-----Cch
Confidence 999999999999999999999999999999997532 1221111 2257789999999996 688
Q ss_pred hHHHHhHHHHH
Q 023678 250 NEEEMKMVKET 260 (279)
Q Consensus 250 t~eE~k~~~E~ 260 (279)
++++.|+.-|+
T Consensus 216 akav~kVlPeL 226 (338)
T 3lvf_P 216 AKAIGKVIPEI 226 (338)
T ss_dssp TTTGGGTCGGG
T ss_pred HHHHhhhchhh
Confidence 88886554333
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=242.71 Aligned_cols=193 Identities=14% Similarity=0.175 Sum_probs=149.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec-------------CCCCce----------eeeCCceeEEee-c
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-------------RSAGKQ----------LSFQDKAYTVEE-L 94 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~-------------~s~G~~----------~~~~~~~~~v~~-~ 94 (279)
++||||+|+ |++|++++|+|.+|+.|.++++++.+. +..|+. +...+..+.+.. .
T Consensus 2 ~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (339)
T 3b1j_A 2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR 80 (339)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred ceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecC
Confidence 379999999 999999999998864478999888643 334431 222333444432 2
Q ss_pred Ccc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCE--EEEcCCCCCCCCCCc-eeeccCCHHhhhccccCCCCCcEEE
Q 023678 95 TED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSI--VVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGALIA 167 (279)
Q Consensus 95 d~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~--VIDlS~~~R~~~~vp-lvvPevN~~~i~~~~~~~~~~~iVa 167 (279)
|++ .|. ++|+||+|+|+..+++.+++++++|++ |||++++ +++| .+||+||+++++.. +.+|||
T Consensus 81 dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~----~~~p~~~V~gVN~~~~~~~-----~~~IIS 151 (339)
T 3b1j_A 81 NPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGK----GEGVGTYVIGVNDSEYRHE-----DFAVIS 151 (339)
T ss_dssp CGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB----SSSCEECCTTTTGGGCCTT-----TCSEEE
T ss_pred ChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCC----CCCCeeEEcccCHHHhCcC-----CCeEEE
Confidence 333 354 799999999999999999999999998 9999987 3467 99999999998731 268999
Q ss_pred CCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccC
Q 023678 168 NPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (279)
Q Consensus 168 nPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~ 247 (279)
||||+|++++++|+||+++|+|+++.++|+|++||+ .+++++.... + . -++..++|++|++-+
T Consensus 152 nasCtTn~lap~lk~L~~~fgI~~~~~tTvha~Tg~-q~~vd~~~~d---~------r---~~r~a~~NiiP~~tg---- 214 (339)
T 3b1j_A 152 NASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLD-QRILDASHRD---L------R---RARAAAVNIVPTTTG---- 214 (339)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTT-SCSSSCCCSS---T------T---TTSCTTSCCEEEECS----
T ss_pred CCcchhhHHHHHHHHHHHhCCeeEEEEEEEEeecCC-chhcccchhh---h------h---ccccHHHceEcccCc----
Confidence 999999999999999999999999999999999998 6665543211 1 0 134578999999733
Q ss_pred CChHHHHhHHHHHHHhcCC
Q 023678 248 GYNEEEMKMVKETRKIWVS 266 (279)
Q Consensus 248 g~t~eE~k~~~E~~kil~~ 266 (279)
+++++ +||++.
T Consensus 215 ----aakav----~kVlpe 225 (339)
T 3b1j_A 215 ----AAKAV----ALVIPE 225 (339)
T ss_dssp ----HHHHH----HHHCGG
T ss_pred ----hHHHH----HHHhHh
Confidence 77665 788743
|
| >2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=240.99 Aligned_cols=193 Identities=17% Similarity=0.187 Sum_probs=147.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec-------------CCCC----------ceeeeCCceeEEe-ecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-------------RSAG----------KQLSFQDKAYTVE-ELT 95 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~-------------~s~G----------~~~~~~~~~~~v~-~~d 95 (279)
+||||.|+ |.||+.++|.|.++ |.++++++... +..| ..+.+.++.+.+. +.+
T Consensus 3 ikV~InGf-GrIGr~v~r~l~~~--~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~d 79 (342)
T 2ep7_A 3 IKVGINGF-GRIGRSFFRASWGR--EEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKD 79 (342)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTC--TTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSS
T ss_pred eEEEEECC-CHHHHHHHHHHHhC--CCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence 79999997 99999999999988 89999888643 1223 2333455566665 345
Q ss_pred cc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCc-eeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 96 ED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 96 ~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vp-lvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
++ .|. ++|+||+|+|...++++++.++++|++.|.+|++- +++| ++|||||++.++.. +.+||||||
T Consensus 80 p~~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps---~dvp~~vV~gVN~~~~~~~-----~~~IISNas 151 (342)
T 2ep7_A 80 PSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPA---KNPDITVVLGVNEEKYNPK-----EHNIISNAS 151 (342)
T ss_dssp GGGCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCC---BSCSEECCTTTSGGGCCTT-----TCCEEECCC
T ss_pred hhhCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCC---CCCCceEEcCcCHHHhccc-----CCeEEECCC
Confidence 43 354 89999999999999999999999999644444442 2589 99999999988731 358999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCCh
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t 250 (279)
|+|++|+++|+||+++|+|+++.+||+|++||..+- +.|.. ..-..++++++|+||++ +|++
T Consensus 152 CTTn~Lap~lk~L~d~fGI~~~~mTTvha~T~~q~~------------~d~p~-~d~r~~r~~a~NiIP~~-----tGaa 213 (342)
T 2ep7_A 152 CTTNCLAPCVKVLNEAFGVEKGYMVTVHAYTNDQRL------------LDLPH-KDFRRARAAAINIVPTT-----TGAA 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBS------------SSCCC-SSTTTTSBGGGCCEEEC-----CCTT
T ss_pred hHHHHHHHHHHHHHHHcCeeEEEEEEEeecccchhh------------hcCCc-chhhhhhhHhhCccCCC-----CChH
Confidence 999999999999999999999999999999997422 22211 11124678999999998 4566
Q ss_pred HHHHhHHHHHHHhcCCCCcc
Q 023678 251 EEEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 251 ~eE~k~~~E~~kil~~~~~~ 270 (279)
+ |++||| |+|.
T Consensus 214 k-------av~kVl--P~L~ 224 (342)
T 2ep7_A 214 K-------AIGEVI--PELK 224 (342)
T ss_dssp G-------GGGGTS--GGGT
T ss_pred H-------HHHHhh--hccC
Confidence 5 446676 4444
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=240.02 Aligned_cols=192 Identities=16% Similarity=0.256 Sum_probs=148.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec-CCC-------------Cc------------eeeeCCceeEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSA-------------GK------------QLSFQDKAYTVE 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~-~s~-------------G~------------~~~~~~~~~~v~ 92 (279)
++||||+|+ |++|++++|+|.+| |.++++++.++ ... |+ .+...++.+.+.
T Consensus 3 ~ikVgI~G~-GrIGr~l~R~l~~~--p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~ 79 (337)
T 3e5r_O 3 KIKIGINGF-GRIGRLVARVALQS--EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVF 79 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTC--SSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEE
T ss_pred ceEEEEECc-CHHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEE
Confidence 479999998 99999999999988 99999999873 111 11 111122233333
Q ss_pred -ecCccC--C--CCCcEEEecCCCchhhhhHHHHHhCCC--EEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcE
Q 023678 93 -ELTEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGAL 165 (279)
Q Consensus 93 -~~d~~~--~--~~~DvVf~a~g~~~s~~~~~~~~~aG~--~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~i 165 (279)
+.|++. | .++|+||+|+|+..+++.+++++++|+ +|||+++. +.|.+|++||++.++. +.++
T Consensus 80 ~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa~-----d~p~~V~gvN~~~~~~------~~~i 148 (337)
T 3e5r_O 80 GIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSK-----DAPMFVCGVNEDKYTS------DIDI 148 (337)
T ss_dssp CCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS-----SSCBCCTTTTGGGCCT------TCCE
T ss_pred ecCChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCCC-----CCCEEEeccCHHHhCC------CCcE
Confidence 224443 3 489999999999999999999999999 89999872 4789999999999873 3689
Q ss_pred EECCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcc
Q 023678 166 IANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVL 245 (279)
Q Consensus 166 VanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~ 245 (279)
||||||||++++++|+||+++++|++..++|+|++||+ ++++++. ++. ... -.+..++|++|+.
T Consensus 149 IsnpsCtt~~la~~lkpL~~~~gI~~~~~ttvha~Tg~-q~~vd~~---------~~~-~~~-~~r~~~~NiiP~~---- 212 (337)
T 3e5r_O 149 VSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITAT-QKTVDGP---------SSK-DWR-GGRAASFNIIPSS---- 212 (337)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTT-SBSSSCC---------CTT-CSG-GGSBGGGSCEEEE----
T ss_pred EECCChHHHHHHHHHHHHHHhcCccccceeEEEeeccc-ccccccc---------ccc-ccc-ccccHhhCccccC----
Confidence 99999999999999999999999999999999999997 6665532 111 011 1356789999997
Q ss_pred cCCChHHHHhHHHHHH
Q 023678 246 ENGYNEEEMKMVKETR 261 (279)
Q Consensus 246 ~~g~t~eE~k~~~E~~ 261 (279)
+|+++|+.|+.-|++
T Consensus 213 -tg~a~ei~kvlpel~ 227 (337)
T 3e5r_O 213 -TGAAKAVGKVLPDLN 227 (337)
T ss_dssp -CCHHHHHHHHSGGGT
T ss_pred -CCchHHHHHHHHHhC
Confidence 477777777666664
|
| >3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=235.62 Aligned_cols=194 Identities=16% Similarity=0.192 Sum_probs=150.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC------------------CCC-------c-eeeeCCceeE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR------------------SAG-------K-QLSFQDKAYT 90 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~------------------s~G-------~-~~~~~~~~~~ 90 (279)
|.++||+|.| .|.+||.++|.+.++ +.++++++.... ..| . .+.+.++.+.
T Consensus 1 m~~~kv~ING-fGrIGr~v~R~~~~~--~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~ 77 (337)
T 3v1y_O 1 MGKIKIGING-FGRIGRLVARVALQS--EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVT 77 (337)
T ss_dssp -CCEEEEEEC-CSHHHHHHHHHHHTC--SSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTEEEE
T ss_pred CCceEEEEEC-CChHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCEEEE
Confidence 3467999999 899999999999888 789999987541 112 0 2333455566
Q ss_pred Ee-ecCcc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcE
Q 023678 91 VE-ELTED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGAL 165 (279)
Q Consensus 91 v~-~~d~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~i 165 (279)
+. +-++. .|. ++|+||+|+|...+++.++.++++|++.|++|++. .|+|++|||||++.++. +.+|
T Consensus 78 v~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps---~d~p~vV~gVN~~~~~~------~~~I 148 (337)
T 3v1y_O 78 VFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPS---KDAPMFVCGVNEDKYTS------DIDI 148 (337)
T ss_dssp EECCSSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCC---SSSCBCCTTTTGGGCCT------TCCE
T ss_pred EEEecCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCC---CCCCeECCCCCHHHcCC------CCcE
Confidence 63 23333 354 89999999999999999999999999655555553 25799999999999874 5789
Q ss_pred EECCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcc
Q 023678 166 IANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVL 245 (279)
Q Consensus 166 VanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~ 245 (279)
||||+|+|++++++|+||+++|+|+++.++|+|++||+++. +.|...+.-.+++++++|+||++.
T Consensus 149 ISnasCTTn~Lap~lkvL~d~fGI~~g~mTTvha~T~~q~~------------~Dg~~~kd~r~~r~~a~NiIP~~t--- 213 (337)
T 3v1y_O 149 VSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKT------------VDGPSSKDWRGGRAASFNIIPSST--- 213 (337)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCTTSBS------------SSCCCTTCGGGGSBGGGCCEEEEC---
T ss_pred EecCchhhhhHHHHHHHHHHhcCeEEEEEeeeeeccchhhh------------ccCCccccccccccccceeecCCC---
Confidence 99999999999999999999999999999999999999763 123222233577899999999974
Q ss_pred cCCChHHHHhHHHHHHHhcCC
Q 023678 246 ENGYNEEEMKMVKETRKIWVS 266 (279)
Q Consensus 246 ~~g~t~eE~k~~~E~~kil~~ 266 (279)
|+++ |++|||+.
T Consensus 214 --Gaak-------av~kVlPe 225 (337)
T 3v1y_O 214 --GAAK-------AVGKVLPD 225 (337)
T ss_dssp --CHHH-------HHHHHSGG
T ss_pred --ChHH-------HHHHhccc
Confidence 5554 45777743
|
| >3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=231.20 Aligned_cols=190 Identities=18% Similarity=0.184 Sum_probs=147.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-----------------------CCceeeeCCceeEEe-ec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-----------------------AGKQLSFQDKAYTVE-EL 94 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-----------------------~G~~~~~~~~~~~v~-~~ 94 (279)
++||+|.| .|.+||.++|.+.+++.+.++++++...-. .|..+.+.++.+.+. +-
T Consensus 2 ~~kv~ING-fGrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~ 80 (335)
T 3doc_A 2 AVRVAING-FGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDVGYGPIKVHAVR 80 (335)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEECSSEEESSSSEEEEECCS
T ss_pred CEEEEEEC-CCcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEEecCEEEECCEEEEEEeec
Confidence 46999999 899999999998876446789998865321 122233345666664 33
Q ss_pred Cc--cCCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 95 TE--DSFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 95 d~--~~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
++ ..|. ++|+||+|+|...++++++.++++|++.|.+|++. .+ ++|++|||||++.++. +.+|||||+
T Consensus 81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps-~d-~~p~vV~gVN~~~~~~------~~~IISNas 152 (335)
T 3doc_A 81 NPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPA-DG-ADLTVVYGVNNDKLTK------DHLVISNAS 152 (335)
T ss_dssp STTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC-TT-CSEECCTTTTGGGCCT------TCCEEECCC
T ss_pred ccccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCC-CC-CCCEEecccCHHHhCc------cCCeEecCc
Confidence 33 3465 89999999999999999999999999666666653 33 5799999999999874 578999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCCh
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t 250 (279)
|+|++++++|+||+++|+|+++.++|+|++||.++. +.| +.+.-.+++++++|+||+. +|++
T Consensus 153 CTTn~Lap~lk~L~d~fGI~~g~mTTvha~T~~q~~------------~D~-p~kd~r~~r~aa~NiIP~~-----tGaa 214 (335)
T 3doc_A 153 CTTNCLAPVAQVLNDTIGIEKGFMTTIHSYTGDQPT------------LDT-MHKDLYRARAAALSMIPTS-----TGAA 214 (335)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCS------------SCC-CCSSTTTTSCTTSSCEEEE-----CCHH
T ss_pred hhhhhhHHhHHHHHHHcCEEEEEEEeeeeccchhhh------------hcC-ccccccccccCcceEecCC-----CchH
Confidence 999999999999999999999999999999997532 122 2223357789999999994 7776
Q ss_pred HHHHh
Q 023678 251 EEEMK 255 (279)
Q Consensus 251 ~eE~k 255 (279)
+++.|
T Consensus 215 kav~k 219 (335)
T 3doc_A 215 KAVGL 219 (335)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65533
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-30 Score=241.56 Aligned_cols=193 Identities=14% Similarity=0.173 Sum_probs=149.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec-------------CCCCce----------eeeCCceeEEee-c
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-------------RSAGKQ----------LSFQDKAYTVEE-L 94 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~-------------~s~G~~----------~~~~~~~~~v~~-~ 94 (279)
++||||+|+ |++|++++|+|.+|+.|.++++++.+. +..|+. +...++.+.+.. .
T Consensus 2 ~ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (380)
T 2d2i_A 2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR 80 (380)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred CcEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecC
Confidence 379999998 999999999998764478999888663 334431 112333444432 2
Q ss_pred CccC--CC--CCcEEEecCCCchhhhhHHHHHhCCCE--EEEcCCCCCCCCCCc-eeeccCCHHhhhccccCCCCCcEEE
Q 023678 95 TEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSI--VVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGALIA 167 (279)
Q Consensus 95 d~~~--~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~--VIDlS~~~R~~~~vp-lvvPevN~~~i~~~~~~~~~~~iVa 167 (279)
+++. |. ++|+||+|+|+..+++.+++++++|++ |||++++ +++| .+||+||+++++.. +.+|||
T Consensus 81 dp~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~----d~~p~~~V~GVN~e~~~~~-----~~~IVS 151 (380)
T 2d2i_A 81 NPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGK----AEGVGTYVIGVNDSEYRHE-----DFAVIS 151 (380)
T ss_dssp CGGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB----SSSCEECCTTTTGGGCCTT-----TCSEEE
T ss_pred ChHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCC----CCCCceEEcccCHHHhccc-----CCcEEE
Confidence 3433 43 899999999999999999999999998 9999987 3467 99999999998731 258999
Q ss_pred CCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccC
Q 023678 168 NPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (279)
Q Consensus 168 nPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~ 247 (279)
||||+|++++++|+||+++|+|+++.|+|+|++||+ .+.+++...+ +- -++..++|+||++-+
T Consensus 152 NasCtTn~lap~lk~L~d~fgI~~g~mTTvha~Tg~-q~~vD~~~~d---~r---------~gR~aa~NiIP~~Tg---- 214 (380)
T 2d2i_A 152 NASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLD-QRILDASHRD---LR---------RARAAAVNIVPTTTG---- 214 (380)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTT-SCSSSCCCSS---TT---------TTSCGGGCCEEEECC----
T ss_pred CCchHHHHHHHHHHHHHHhcCeeEEEEEEEeecccc-chhhccchhh---hh---------hcchHhhCeEeccCc----
Confidence 999999999999999999999999999999999998 7766644211 10 135678999999743
Q ss_pred CChHHHHhHHHHHHHhcCC
Q 023678 248 GYNEEEMKMVKETRKIWVS 266 (279)
Q Consensus 248 g~t~eE~k~~~E~~kil~~ 266 (279)
+++++ +|+|..
T Consensus 215 ----aakav----~kvlPe 225 (380)
T 2d2i_A 215 ----AAKAV----ALVIPE 225 (380)
T ss_dssp ----HHHHH----HHHCGG
T ss_pred ----hHHHH----HhhhHh
Confidence 77665 788743
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=233.38 Aligned_cols=190 Identities=15% Similarity=0.206 Sum_probs=151.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-C-----------------------CCceeeeCCceeEEe-
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-S-----------------------AGKQLSFQDKAYTVE- 92 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s-----------------------~G~~~~~~~~~~~v~- 92 (279)
+++||+|.| .|.+|+.++|.+.++ + ++++++..+. . .|+.+.+.++.+.+.
T Consensus 6 ~~~kvgInG-FGRIGrlv~R~~~~~--~-veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~ 81 (346)
T 3h9e_O 6 RELTVGING-FGRIGRLVLRACMEK--G-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQ 81 (346)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHT--T-CEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEEC
T ss_pred CeeEEEEEC-CChHHHHHHHHHHhC--C-CEEEEEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEECCEEEEEEe
Confidence 468999999 899999999998887 5 8888876531 0 122333455666665
Q ss_pred ecCccC--CC--CCcEEEecCCCchhhhhHHHHHhCCC--EEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEE
Q 023678 93 ELTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALI 166 (279)
Q Consensus 93 ~~d~~~--~~--~~DvVf~a~g~~~s~~~~~~~~~aG~--~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iV 166 (279)
+.+++. |. ++|+||+|+|...++++++.++++|+ +|||++++ |+|++|||||++.++.. +.+||
T Consensus 82 e~dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~-----d~plvV~gVN~~~~~~~-----~~~II 151 (346)
T 3h9e_O 82 CKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSP-----DAPMFVMGVNENDYNPG-----SMNIV 151 (346)
T ss_dssp CSSGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCS-----SSCBCCTTTTGGGCCTT-----TCSEE
T ss_pred cCChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCC-----CCCeeCcccCHHHcCcc-----cCCEE
Confidence 344443 54 89999999999999999999999999 78888875 57999999999998631 36899
Q ss_pred ECCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCccc
Q 023678 167 ANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLE 246 (279)
Q Consensus 167 anPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~ 246 (279)
|||+|+|++|+++|+||+++|+|+++.+||+|++||.++ ++.|...+...+++++++|+||++.+
T Consensus 152 SNasCTTn~Lap~lkvL~d~fGI~~g~mTTvhA~T~tQ~------------~~Dg~~~kd~r~~r~aa~NiIP~~tG--- 216 (346)
T 3h9e_O 152 SNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYTATQK------------TVDGPSRKAWRDGRGAHQNIIPASTG--- 216 (346)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSB------------SSSCCCTTSGGGGSBTTTCCEEECCH---
T ss_pred ECCcchhhhHHHHHHHHHHHhCeeEEEEeeeeeccCccc------------cccCCCCCCccccccceeeeecccCc---
Confidence 999999999999999999999999999999999999664 23443334456889999999999954
Q ss_pred CCChHHHHhHHHHHHHhcC
Q 023678 247 NGYNEEEMKMVKETRKIWV 265 (279)
Q Consensus 247 ~g~t~eE~k~~~E~~kil~ 265 (279)
. ..+..||+.
T Consensus 217 -----a----akavgkViP 226 (346)
T 3h9e_O 217 -----A----AKAVTKVIP 226 (346)
T ss_dssp -----H----HHHHHHHSG
T ss_pred -----h----HHhhheech
Confidence 1 246668873
|
| >3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=233.70 Aligned_cols=188 Identities=17% Similarity=0.195 Sum_probs=147.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-C-----------------------CCceeeeCCceeEEe-e
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-S-----------------------AGKQLSFQDKAYTVE-E 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s-----------------------~G~~~~~~~~~~~v~-~ 93 (279)
|+||+|.| .|.+||.++|.+.++ +.++++++.... . .|..+.+.++.+.+. +
T Consensus 1 ~~kv~ING-fGrIGr~v~R~~~~~--~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e 77 (332)
T 3pym_A 1 MVRVAING-FGRIGRLVMRIALSR--PNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQE 77 (332)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHS--TTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECC
T ss_pred CeEEEEEC-CCcHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEEee
Confidence 47999999 899999999998888 789999987541 1 122233455666664 3
Q ss_pred cCc--cCCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC
Q 023678 94 LTE--DSFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 94 ~d~--~~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
-++ ..|. ++|+||+|+|...+++.++.++++|++.|++|++. .|+|++|||||++.++. +.+|||||
T Consensus 78 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps---~d~p~vV~gVN~~~~~~------~~~IISna 148 (332)
T 3pym_A 78 RDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPS---STAPMFVMGVNEEKYTS------DLKIVSNA 148 (332)
T ss_dssp SSGGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCC---SSSCBCCTTTTGGGCCT------TCCEEECC
T ss_pred cccccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCC---CCCCeEeeccchhhcCc------cccEEecC
Confidence 333 3465 89999999999999999999999999655566653 24799999999999874 57899999
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCC
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
+|+|++|+++|+||+++|+|+++.++|+|++||.++- +.|...+.-.+++++++|+||++ +|+
T Consensus 149 sCTTn~Lap~lkvL~d~fGI~~g~mTTvha~T~~Q~~------------vDg~~~kd~r~~r~aa~NiIP~~-----tGa 211 (332)
T 3pym_A 149 SCTTNCLAPLAKVINDAFGIEEGLMTTVHSLTATQKT------------VDGPSHKDWRGGRTASGNIIPSS-----TGA 211 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCS------------SSCCCTTCTGGGSCGGGCCEEEE-----CSH
T ss_pred cchhhhhHHHHHHHHHhcCeEEEEEEEEeeccccchh------------ccCCCcccCccccchhhcccCCC-----CCh
Confidence 9999999999999999999999999999999997532 22322122347788999999997 567
Q ss_pred hHHHHh
Q 023678 250 NEEEMK 255 (279)
Q Consensus 250 t~eE~k 255 (279)
++++.|
T Consensus 212 akav~k 217 (332)
T 3pym_A 212 AKAVGK 217 (332)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666633
|
| >4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=233.44 Aligned_cols=189 Identities=16% Similarity=0.168 Sum_probs=141.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-----------------------CCceeeeCCceeEEe-ec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-----------------------AGKQLSFQDKAYTVE-EL 94 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-----------------------~G~~~~~~~~~~~v~-~~ 94 (279)
|+||+|.| .|.+||.++|.+.++ +.++++++...-. .|..+.+.++.+.+. +-
T Consensus 4 ~~kv~ING-fGrIGr~v~Ra~~~~--~~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~ 80 (345)
T 4dib_A 4 MTRVAING-FGRIGRMVFRQAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNNR 80 (345)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHTTC--SSSEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCS
T ss_pred cEEEEEEC-CCcHHHHHHHHHHhC--CCceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEeecC
Confidence 58999999 899999999999888 7899999875321 122233345566663 33
Q ss_pred Cc--cCCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 95 TE--DSFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 95 d~--~~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
++ ..|. ++|+||+|+|...+++.++.++++|++.|++|++. .+++|++|||||++.++.. +.+|||||+
T Consensus 81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps--~~d~p~vV~gVN~~~~~~~-----~~~IISNaS 153 (345)
T 4dib_A 81 DPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPG--KNEDVTIVVGVNEDQLDIT-----KHTVISNAS 153 (345)
T ss_dssp CGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC--BSCSEECCTTTTGGGCCTT-----TCSEEECCC
T ss_pred ChhhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCC--CCCCCEEEecCCHHHcCcc-----cCeEEECCc
Confidence 33 3465 89999999999999999999999999666666653 3578999999999998631 368999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCCh
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t 250 (279)
|+|++|+++|+||+++|+|+++.++|+|++||.++- ++ | +.+.-.+++++++|+||++ +|++
T Consensus 154 CTTn~Lap~lkvL~d~fGI~~g~mTTvhA~T~~Q~~-~D-----------~-p~kd~r~~r~aa~NIIP~~-----tGaa 215 (345)
T 4dib_A 154 CTTNCLAPVVKVLDEQFGIENGLMTTVHAYTNDQKN-ID-----------N-PHKDLRRARACGQSIIPTT-----TGAA 215 (345)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEEEEEEEECC--------------------------CCTTSCTTTCCEEEC-----CTHH
T ss_pred hhhhhhHHHHHHHHHhcCeEEEEEEeeeeccCCcee-cc-----------c-cccccccchhhhhceecCC-----CchH
Confidence 999999999999999999999999999999997531 22 1 1122246778999999997 5666
Q ss_pred HHHHh
Q 023678 251 EEEMK 255 (279)
Q Consensus 251 ~eE~k 255 (279)
+++.|
T Consensus 216 kav~k 220 (345)
T 4dib_A 216 KALAK 220 (345)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 65533
|
| >3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=236.75 Aligned_cols=184 Identities=16% Similarity=0.203 Sum_probs=144.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec-----------------------CCCCceeeeCCceeEEeec-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-----------------------RSAGKQLSFQDKAYTVEEL- 94 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~-----------------------~s~G~~~~~~~~~~~v~~~- 94 (279)
++||||+|+ |.||+.++|.|.+++ ++++++... ++.|..+.+.++.+.+...
T Consensus 21 ~~kVaInGf-GrIGr~vlr~l~e~~---~~ivaIndl~d~~~~a~llkydS~hG~f~~~v~~~~~~l~i~Gk~I~v~~~~ 96 (356)
T 3hja_A 21 SMKLAINGF-GRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESRDGAIVVDGREIKIIAER 96 (356)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTT---CEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeEEEEECC-CHHHHHHHHHHHHCC---CCEEEEeCCCCHHHhhhhhccccCCCCCCCCEEEcCCEEEECCEEEEEEEcC
Confidence 489999998 999999999999884 455555321 2344555566777777643
Q ss_pred Ccc--CCC--CCcEEEecCCCchh----hhhHHHHHh-CCCE--EEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCC
Q 023678 95 TED--SFD--GVDIALFSAGGSIS----KKFGPIAVE-KGSI--VVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKG 163 (279)
Q Consensus 95 d~~--~~~--~~DvVf~a~g~~~s----~~~~~~~~~-aG~~--VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~ 163 (279)
+++ .|. ++|+||+|+|...+ ++.++.+++ +|++ |||+++ .+ ++|++|||||++.++. +.
T Consensus 97 dp~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps---~d-~vp~vV~gVN~~~~~~------~~ 166 (356)
T 3hja_A 97 DPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPA---KD-EIKTIVLGVNDHDINS------DL 166 (356)
T ss_dssp SGGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCC---SS-CCEECCTTTSGGGCCT------TC
T ss_pred ChhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCC---CC-CCCEEeccCCHHHcCc------Cc
Confidence 343 343 89999999999999 999999999 9996 888876 24 6799999999999874 46
Q ss_pred cEEECCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCC
Q 023678 164 ALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAP 243 (279)
Q Consensus 164 ~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~ 243 (279)
+|||||||+|++++++|+||+++|+|+++.++|+|++||+++- +.+ +.+.-.+.++.++|+||++
T Consensus 167 ~IISNaSCTTn~Lap~lkvL~d~fGI~~g~mTTvhA~T~~Q~~------------~D~-p~kd~r~~r~aa~NIIP~~-- 231 (356)
T 3hja_A 167 KAVSNASCTTNCLAPLAKVLHESFGIEQGLMTTVHAYTNDQRI------------LDL-PHSDLRRARAAALSIIPTS-- 231 (356)
T ss_dssp CEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBS------------SSC-CCSSTTTTSBTTTSCEEEE--
T ss_pred cEEECCccchhhhhHhHHHHHHhcCeEEEEEEEEEeccccccc------------ccC-cccccccccccccEEEcCC--
Confidence 8999999999999999999999999999999999999998642 122 2222346678999999996
Q ss_pred cccCCChHHHH
Q 023678 244 VLENGYNEEEM 254 (279)
Q Consensus 244 ~~~~g~t~eE~ 254 (279)
+|+++++.
T Consensus 232 ---tGaakav~ 239 (356)
T 3hja_A 232 ---TGAAKAVG 239 (356)
T ss_dssp ---CCTTTTHH
T ss_pred ---CchHHHHH
Confidence 46665553
|
| >3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=231.84 Aligned_cols=194 Identities=13% Similarity=0.104 Sum_probs=150.0
Q ss_pred CCEEEEECcCcHHHHHHHHH----HHcCCCCceEEEEEeecC-C-------------------------------CCcee
Q 023678 39 APSVAVVGVTGAVGQEFLSV----LSDRDFPYRSIKMLASKR-S-------------------------------AGKQL 82 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~l----L~~~~~p~~~l~~l~s~~-s-------------------------------~G~~~ 82 (279)
++||+|.| .|.+||.++|. +.++ +.++++++..+- . .|..+
T Consensus 2 ~~kv~ING-FGrIGr~v~Ra~~~~~~~~--~~~~vvaINd~~~d~~~~a~llkyDS~hG~f~~~v~~~~~~~~~~~~~~l 78 (359)
T 3ids_C 2 PIKVGING-FGRIGRMVFQALCEDGLLG--TEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTL 78 (359)
T ss_dssp CEEEEEEC-TTHHHHHHHHHHHHTTCBT--TTEEEEEEECSSCCHHHHHHHHHEETTTEECSSCEEEECSCTTSSSCCEE
T ss_pred ceEEEEEC-CChHHHHHHHHhHHHHhcC--CCcEEEEEecCCCCHHHHHHHhcccCCCCCEeeEEEecccccccCCCCEE
Confidence 46999999 89999999999 5555 789999987621 0 12233
Q ss_pred eeCCceeEEe--ecCcc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhcc
Q 023678 83 SFQDKAYTVE--ELTED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGI 156 (279)
Q Consensus 83 ~~~~~~~~v~--~~d~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~ 156 (279)
.+.++.+.+. +.+++ .|. ++|+||+|+|...+++.++.++++|++.|++|++. ++++|++|||||++.++..
T Consensus 79 ~inGk~I~v~~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps--~~d~p~vV~gVN~~~~~~~ 156 (359)
T 3ids_C 79 VVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPA--SGGAKTLVMGVNHHEYNPS 156 (359)
T ss_dssp EETTEEEEECCCCSSTTTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCC--BSSCEECCTTTTGGGCCTT
T ss_pred EECCEEEEEEEccCCcccCCccccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCC--CCCCCeEEeccCHHHcCCC
Confidence 3445566665 33444 354 89999999999999999999999999777777765 4578999999999998631
Q ss_pred ccCCCCCcEEECCCChHHHHHHhhhch-hhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCcccccccccc
Q 023678 157 KVGMGKGALIANPNCSTIICLMAATPL-HRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAF 235 (279)
Q Consensus 157 ~~~~~~~~iVanPgC~tt~l~laL~PL-~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iaf 235 (279)
+.+|||||+|+|++++++|+|| +++|+|+++.++|||++||..+- +.|...+.-.+++++++
T Consensus 157 -----~~~IISNaSCTTn~Lap~lkvL~~d~fGI~~g~mTTvha~T~tQ~~------------vD~~~~kd~r~~r~aa~ 219 (359)
T 3ids_C 157 -----EHHVVSNASCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKT------------VDGVSVKDWRGGRAAAV 219 (359)
T ss_dssp -----TCSEEECCCHHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCTTSBS------------SSCCCTTCTGGGSBGGG
T ss_pred -----CCCEEECCchHhhhHHHhhhhhhhccCCeEEEEEeeeeeccchhhh------------hcCCccccccccccCcc
Confidence 3689999999999999999999 99999999999999999997532 12221122347889999
Q ss_pred ccccCCCCcccCCChHHHHhHHHH
Q 023678 236 NLFSHNAPVLENGYNEEEMKMVKE 259 (279)
Q Consensus 236 N~iP~i~~~~~~g~t~eE~k~~~E 259 (279)
|+||++ +|+++++.|+.-|
T Consensus 220 NiIP~~-----tGaakav~kVlPe 238 (359)
T 3ids_C 220 NIIPST-----TGAAKAVGMVIPS 238 (359)
T ss_dssp CCEEEE-----CSHHHHHHHHSGG
T ss_pred eeEccC-----CchHHHHhhhchh
Confidence 999996 5777777654333
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-24 Score=201.82 Aligned_cols=151 Identities=17% Similarity=0.170 Sum_probs=119.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee---eCCceeE--------Eeec------Cc-cCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS---FQDKAYT--------VEEL------TE-DSFD 100 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~---~~~~~~~--------v~~~------d~-~~~~ 100 (279)
|+||||+|+ |++|++++|+|.+| |.++++.+.++. .+.... ..+.... +.+. +. +.+.
T Consensus 1 ~ikVgIiGa-G~iG~~~~r~L~~~--p~~elvav~d~~-~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~ 76 (340)
T 1b7g_O 1 MVNVAVNGY-GTIGKRVADAIIKQ--PDMKLVGVAKTS-PNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK 76 (340)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTC--TTEEEEEEECSS-CSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH
T ss_pred CeEEEEEec-CHHHHHHHHHHHcC--CCCEEEEEEcCC-hHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc
Confidence 369999999 99999999999988 999999997753 332100 0000000 1000 00 1123
Q ss_pred CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhh
Q 023678 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180 (279)
Q Consensus 101 ~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL 180 (279)
++|+||+|+|++.++++++.++++|+++||+|+++|...+ ++++|++|.++.. +.++|+||||+|++++++|
T Consensus 77 ~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~~-~~~v~~vN~~~~~-------~~~iIsnpsCtt~~l~~~l 148 (340)
T 1b7g_O 77 TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVAD-ISFSALCNYNEAL-------GKKYIRVVSCNTTALLRTI 148 (340)
T ss_dssp HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGSS-CEECHHHHHHHHT-------TCSEEEECCHHHHHHHHHH
T ss_pred CCCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCCC-CEEEcCcchHHHc-------CCCCcccCCcHHHHHHHHH
Confidence 6899999999999999999999999999999999995433 6899999987765 3468999999999999999
Q ss_pred hchhhhcCccEEEEEEeeccc
Q 023678 181 TPLHRRAKVTRMVVSTYQAAS 201 (279)
Q Consensus 181 ~PL~~~~~i~~v~vtt~q~vS 201 (279)
+||++.++|+++.++|+|++.
T Consensus 149 k~L~~~~gI~~~~~tt~~~~~ 169 (340)
T 1b7g_O 149 CTVNKVSKVEKVRATIVRRAA 169 (340)
T ss_dssp HHHHTTSCEEEEEEEEEEESS
T ss_pred HHHHHhCCeEEEEEEEEeccC
Confidence 999999999999999999664
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-23 Score=195.46 Aligned_cols=179 Identities=12% Similarity=0.116 Sum_probs=136.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeeeCCce----------------eEEeecCcc-CC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSFQDKA----------------YTVEELTED-SF 99 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~~~~~----------------~~v~~~d~~-~~ 99 (279)
++||||+|+ |++|+.+++.|.++ |.++++++.++.. .+......+-. +.+.. +.+ .+
T Consensus 2 ~irVgIiG~-G~iG~~~~r~l~~~--~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~-d~~~l~ 77 (334)
T 2czc_A 2 KVKVGVNGY-GTIGKRVAYAVTKQ--DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAG-TLNDLL 77 (334)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTC--TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSC-BHHHHH
T ss_pred CcEEEEEeE-hHHHHHHHHHHhcC--CCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcC-cHHHhc
Confidence 479999996 99999999999988 9999999987531 11111111100 01111 111 23
Q ss_pred CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCC-C-ceeeccCCHHhhhccccCCCCCcEEECCCChHHHHH
Q 023678 100 DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN-V-PLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICL 177 (279)
Q Consensus 100 ~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~-v-plvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~ 177 (279)
.++|+||.|+|++.+.++++.++++|++||+ ++++ +++ + +.++|++|.++++ +.++|+||||++++++
T Consensus 78 ~~vDvV~~aTp~~~h~~~a~~~l~aGk~Vi~-sap~--~~d~~~~~~v~~vn~~~~~-------~~~ii~~~~C~t~~l~ 147 (334)
T 2czc_A 78 EKVDIIVDATPGGIGAKNKPLYEKAGVKAIF-QGGE--KADVAEVSFVAQANYEAAL-------GKNYVRVVSCNTTGLV 147 (334)
T ss_dssp TTCSEEEECCSTTHHHHHHHHHHHHTCEEEE-CTTS--CGGGSSEEECHHHHGGGGT-------TCSEEEECCHHHHHHH
T ss_pred cCCCEEEECCCccccHHHHHHHHHcCCceEe-eccc--ccccccceEEeccCHHHHh-------hCCcEEecCcHHHHHH
Confidence 5899999999999999999999999999994 5554 324 4 5899999998887 4689999999999999
Q ss_pred HhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHH
Q 023678 178 MAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMV 257 (279)
Q Consensus 178 laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~ 257 (279)
+++++|++. |+++.++|+|++||+++ +.++.++|++|++ +.++|+++
T Consensus 148 P~~~~l~~~--I~~g~i~ti~a~s~~~~-----------------------~~r~~~~niiP~i--~~~~g~~~------ 194 (334)
T 2czc_A 148 RTLSAIREY--ADYVYAVMIRRAADPND-----------------------TKRGPINAIKPTV--EVPSHHGP------ 194 (334)
T ss_dssp HHHHHHGGG--EEEEEEEEEEESSCTTC-----------------------CSCCCSSCCEECC--SSSCTHHH------
T ss_pred HHHHHHHHH--hccccEEEEEEecCccc-----------------------cccChhhcEEecc--CCCCchhh------
Confidence 999999875 99999999999999742 2346789999998 45677554
Q ss_pred HHHHHhcC
Q 023678 258 KETRKIWV 265 (279)
Q Consensus 258 ~E~~kil~ 265 (279)
|+.|+|.
T Consensus 195 -~i~~~l~ 201 (334)
T 2czc_A 195 -DVQTVIP 201 (334)
T ss_dssp -HHTTTSC
T ss_pred -hhheEEE
Confidence 6888873
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-23 Score=193.36 Aligned_cols=220 Identities=16% Similarity=0.233 Sum_probs=163.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHc-CCCCceEEEEEeecCCC--Cceeee-CCceeEEeecC----ccCCCCCcEEEecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSA--GKQLSF-QDKAYTVEELT----EDSFDGVDIALFSA 109 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~-~~~p~~~l~~l~s~~s~--G~~~~~-~~~~~~v~~~d----~~~~~~~DvVf~a~ 109 (279)
+++||+|+| +|++|+.+++.|.+ + |..+++.+++++.. ++.+.. .+......+.+ ...+.++|+||.|+
T Consensus 3 ~~irVaIIG-~G~iG~~~~~~l~~~~--~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~at 79 (312)
T 1nvm_B 3 QKLKVAIIG-SGNIGTDLMIKVLRNA--KYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDAT 79 (312)
T ss_dssp SCEEEEEEC-CSHHHHHHHHHHHHHC--SSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECS
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHhhC--cCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECC
Confidence 358999999 79999999999976 5 99999998876532 333321 11111011111 11135789999999
Q ss_pred CCchhhhhHHHHHhC--CCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhc
Q 023678 110 GGSISKKFGPIAVEK--GSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRA 187 (279)
Q Consensus 110 g~~~s~~~~~~~~~a--G~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~ 187 (279)
|+..+.+++.+++++ |+.|||.++.++ .||++|++|.+++... ++.+++++|||....++.++.++++..
T Consensus 80 p~~~h~~~a~~al~a~~Gk~Vi~ekp~~~----g~~~~p~v~~~~~~~~----~~~~lva~~g~~~ipl~~a~~~~~~~~ 151 (312)
T 1nvm_B 80 SASAHVQNEALLRQAKPGIRLIDLTPAAI----GPYCVPVVNLEEHLGK----LNVNMVTCGGQATIPMVAAVSRVAKVH 151 (312)
T ss_dssp CHHHHHHHHHHHHHHCTTCEEEECSTTCS----SCBCCHHHHTTTTTTC----SEEECCCHHHHHHHHHHHHHHTTSCEE
T ss_pred ChHHHHHHHHHHHHhCCCCEEEEcCcccc----cccccCccCHHHHHhc----cCCcEEEeCCcccchHHHHhhhhccch
Confidence 999999999999999 999999999986 4899999998886421 134688999999999988888876532
Q ss_pred CccEEEEEEeeccc-ccC-hhhHHHHHHHHHH-------------HhcCCCCCccccccccccccccCCCCcccCCChHH
Q 023678 188 KVTRMVVSTYQAAS-GAG-AAAMEELELQTRE-------------VLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEE 252 (279)
Q Consensus 188 ~i~~v~vtt~q~vS-GaG-~~~~~El~~qt~~-------------l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~e 252 (279)
..+ +++++++.| |.| +.+++|+.+++.. ++++.|..+..|.++.+||++| ++.+++++++
T Consensus 152 -~~~-iv~~i~sgs~G~~~~~~l~e~~~~~~~ai~~~gg~~~~k~il~~~p~~~p~~~~~tv~~~~~---~~~~~~~~~~ 226 (312)
T 1nvm_B 152 -YAE-IVASISSKSAGPGTRANIDEFTETTSKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSA---AADQAAVAAS 226 (312)
T ss_dssp -EEE-EEEEEEGGGSCHHHHTCHHHHHHHHHHHHHHTTCCSSEEEEEEEECCSSCCCEEEEEEEEES---SCCHHHHHHH
T ss_pred -hHh-HhhhhhccccCCCcccchhhHHHHHHHHHHHhhhccCCCcEEEEecCCCCcccceeEEEEeC---CCCHHHHHHH
Confidence 123 688888888 554 4557999887762 2233455666677889999999 6778899999
Q ss_pred HHhHHHHHHHhcCCCCccEEe
Q 023678 253 EMKMVKETRKIWVSFKMNFFV 273 (279)
Q Consensus 253 E~k~~~E~~kil~~~~~~v~~ 273 (279)
|+||++|++|+|....|++++
T Consensus 227 ~~~m~~~~~~~~~~~~l~~~~ 247 (312)
T 1nvm_B 227 VAEMVQAVQAYVPGYRLKQQV 247 (312)
T ss_dssp HHHHHHHHHTTCTTEEESSCC
T ss_pred HHHHHHHHHHHcCCCCcCCCc
Confidence 999999999999776555443
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.58 E-value=9.5e-08 Score=73.36 Aligned_cols=93 Identities=19% Similarity=0.209 Sum_probs=63.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecC-c----cCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-E----DSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g~~ 112 (279)
+++|+|+|+ |++|+.+++.|.++ ...++..+ +++... ..+...+......++. . +.+.++|+||.|+|..
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~--g~~~v~~~-~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~ 80 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTS--SNYSVTVA-DHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFF 80 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHC--SSEEEEEE-ESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGG
T ss_pred cCeEEEECC-CHHHHHHHHHHHhC--CCceEEEE-eCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCch
Confidence 468999999 99999999999987 33565555 332110 1111111122222222 1 1256899999999999
Q ss_pred hhhhhHHHHHhCCCEEEEcCCCC
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
....++..+.+.|+.++|++++.
T Consensus 81 ~~~~~~~~~~~~g~~~~~~~~~~ 103 (118)
T 3ic5_A 81 LTPIIAKAAKAAGAHYFDLTEDV 103 (118)
T ss_dssp GHHHHHHHHHHTTCEEECCCSCH
T ss_pred hhHHHHHHHHHhCCCEEEecCcH
Confidence 88999999999999999998764
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.2e-08 Score=89.89 Aligned_cols=123 Identities=14% Similarity=0.130 Sum_probs=81.7
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC---CCceeee-CC--ceeEEeecCc-cCCCCCcEEEecC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF-QD--KAYTVEELTE-DSFDGVDIALFSA 109 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s---~G~~~~~-~~--~~~~v~~~d~-~~~~~~DvVf~a~ 109 (279)
|+|+||+|+||+|++|+.+++.+.++ |.++++.+.+++. .|+.... .+ ..+.+.+ +. +.+.++|+||.++
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~--~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~-dl~~ll~~~DVVIDfT 81 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAA--PDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTD-DIERVCAEADYLIDFT 81 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHC--TTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBC-CHHHHHHHCSEEEECS
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEEecCcccccccHHHHhCCCCCceecC-CHHHHhcCCCEEEEcC
Confidence 55789999999999999999999988 9999998766542 3432221 00 0122211 11 1234689999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHH
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTII 175 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~ 175 (279)
++..+.+++..++++|+.||--+..| +++ ..+.+.... .+..++-.||-+.-.
T Consensus 82 ~p~a~~~~~~~al~~G~~vVigTTG~--s~~--------~~~~L~~aa---~~~~vv~a~N~s~Gv 134 (272)
T 4f3y_A 82 LPEGTLVHLDAALRHDVKLVIGTTGF--SEP--------QKAQLRAAG---EKIALVFSANMSVGV 134 (272)
T ss_dssp CHHHHHHHHHHHHHHTCEEEECCCCC--CHH--------HHHHHHHHT---TTSEEEECSCCCHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC--CHH--------HHHHHHHHh---ccCCEEEECCCCHHH
Confidence 99999999999999999988655544 211 012232211 146788889877644
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.8e-07 Score=82.25 Aligned_cols=90 Identities=20% Similarity=0.300 Sum_probs=64.6
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCcee-EEeecCccCCCCCcEEEecCCCchhh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAY-TVEELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~-~v~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
|+++||+||| .|.+|+.+++.|.++ |.++++++.+++..... .+ +... .+.++ .+..++|+||.|+|+....
T Consensus 7 M~~irv~IIG-~G~iG~~~~~~l~~~--~~~elvav~d~~~~~~~-~~-g~~~~~~~~l--~~~~~~DvViiatp~~~h~ 79 (304)
T 3bio_A 7 DKKIRAAIVG-YGNIGRYALQALREA--PDFEIAGIVRRNPAEVP-FE-LQPFRVVSDI--EQLESVDVALVCSPSREVE 79 (304)
T ss_dssp -CCEEEEEEC-CSHHHHHHHHHHHHC--TTEEEEEEECC--------C-CTTSCEESSG--GGSSSCCEEEECSCHHHHH
T ss_pred CCCCEEEEEC-ChHHHHHHHHHHhcC--CCCEEEEEEcCCHHHHH-Hc-CCCcCCHHHH--HhCCCCCEEEECCCchhhH
Confidence 3568999999 599999999999887 89999987765432111 11 1111 12222 1226799999999999999
Q ss_pred hhHHHHHhCCCEEEEcCC
Q 023678 116 KFGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~ 133 (279)
+++.+++++|..|||.+.
T Consensus 80 ~~~~~al~aG~~Vi~ekP 97 (304)
T 3bio_A 80 RTALEILKKGICTADSFD 97 (304)
T ss_dssp HHHHHHHTTTCEEEECCC
T ss_pred HHHHHHHHcCCeEEECCC
Confidence 999999999999998754
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=9.2e-07 Score=80.16 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=66.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---Cceeee----CCceeEEe-ecCccCCCCCcEEEec
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GKQLSF----QDKAYTVE-ELTEDSFDGVDIALFS 108 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---G~~~~~----~~~~~~v~-~~d~~~~~~~DvVf~a 108 (279)
|++|||+|+|++|.+|+.+++.+.++ |..+++.+..+... |+.... ....+.+. +++ +.+.++|+|+.+
T Consensus 3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~--~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~-~~l~~~DvVIDf 79 (273)
T 1dih_A 3 DANIRVAIAGAGGRMGRQLIQAALAL--EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLD-AVKDDFDVFIDF 79 (273)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHS--TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCST-TTTTSCSEEEEC
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHH-HHhcCCCEEEEc
Confidence 34689999999999999999998877 88898877654321 322110 00112222 222 234679999977
Q ss_pred CCCchhhhhHHHHHhCCCEEEEcCCCC
Q 023678 109 AGGSISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 109 ~g~~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
+.+....+++..++++|+.||--+..|
T Consensus 80 t~p~~~~~~~~~a~~~G~~vVigTtG~ 106 (273)
T 1dih_A 80 TRPEGTLNHLAFCRQHGKGMVIGTTGF 106 (273)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEECCCCC
T ss_pred CChHHHHHHHHHHHhCCCCEEEECCCC
Confidence 788888999999999999988555443
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3e-06 Score=78.00 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=67.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCCCCCcEEEecCCCchhh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
|+++||+|+| +|.+|+.+++.|.++ |.++++.+.+++... .+. ..+.+. +++ +.+.++|+||.|+++....
T Consensus 1 M~~irV~IiG-~G~mG~~~~~~l~~~--~~~elvav~d~~~~~-~~~---~gv~~~~d~~-~ll~~~DvViiatp~~~h~ 72 (320)
T 1f06_A 1 MTNIRVAIVG-YGNLGRSVEKLIAKQ--PDMDLVGIFSRRATL-DTK---TPVFDVADVD-KHADDVDVLFLCMGSATDI 72 (320)
T ss_dssp CCCEEEEEEC-CSHHHHHHHHHHTTC--SSEEEEEEEESSSCC-SSS---SCEEEGGGGG-GTTTTCSEEEECSCTTTHH
T ss_pred CCCCEEEEEe-ecHHHHHHHHHHhcC--CCCEEEEEEcCCHHH-hhc---CCCceeCCHH-HHhcCCCEEEEcCCcHHHH
Confidence 4578999999 599999999999887 889999887765332 222 112221 222 2236799999999999888
Q ss_pred hhHHHHHhCCCEEEEcCCC
Q 023678 116 KFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~ 134 (279)
+.+..++++|..||+-...
T Consensus 73 ~~~~~al~aG~~Vv~ekp~ 91 (320)
T 1f06_A 73 PEQAPKFAQFACTVDTYDN 91 (320)
T ss_dssp HHHHHHHTTTSEEECCCCC
T ss_pred HHHHHHHHCCCEEEECCCC
Confidence 8999999999999976543
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.5e-07 Score=84.00 Aligned_cols=147 Identities=10% Similarity=0.070 Sum_probs=87.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCce-EEEEEeecCCC-Cceeee--CC---ceeEEeecC---ccC----CCC--C
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRSA-GKQLSF--QD---KAYTVEELT---EDS----FDG--V 102 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~-~l~~l~s~~s~-G~~~~~--~~---~~~~v~~~d---~~~----~~~--~ 102 (279)
|+||+|+|| |++|+.+++.|.++ +.+ ..+.+++++.. .+.+.. .. ..+.....| .++ +.+ +
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~--g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~ 77 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMN--REVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKP 77 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTC--TTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC--CCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCC
Confidence 368999998 99999999999988 543 22334444321 111110 00 112222222 111 233 8
Q ss_pred cEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeec---cCCHHhhhccccCCCCCcEEECCCChHHHHHHh
Q 023678 103 DIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIP---EVNPEAMSGIKVGMGKGALIANPNCSTIICLMA 179 (279)
Q Consensus 103 DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvP---evN~~~i~~~~~~~~~~~iVanPgC~tt~l~la 179 (279)
|+||.|+|......++..++++|+.+||.+ .++..+..++... ++ .+..+. .+..++.++||.+....+.
T Consensus 78 DvVin~ag~~~~~~v~~a~l~~g~~vvD~a-~~~~~~~~~~~~~~~~~l-~~~a~~-----aG~~~i~g~G~~PG~~~l~ 150 (405)
T 4ina_A 78 QIVLNIALPYQDLTIMEACLRTGVPYLDTA-NYEHPDLAKFEYKEQWAF-HDRYKE-----KGVMALLGSGFDPGVTNVF 150 (405)
T ss_dssp SEEEECSCGGGHHHHHHHHHHHTCCEEESS-CCBCTTCSCBCSHHHHTT-HHHHHH-----HTCEEEECCBTTTBHHHHH
T ss_pred CEEEECCCcccChHHHHHHHHhCCCEEEec-CCCCcccchhhhHHHHHH-HHHHHH-----hCCEEEEcCCCCccHHHHH
Confidence 999999999888888889999999999964 4442211111111 11 122221 1567899999998887777
Q ss_pred hhchhhh-c-CccEEEEE
Q 023678 180 ATPLHRR-A-KVTRMVVS 195 (279)
Q Consensus 180 L~PL~~~-~-~i~~v~vt 195 (279)
..++.++ + .++.+.+.
T Consensus 151 a~~~~~~~~~~i~~i~i~ 168 (405)
T 4ina_A 151 CAYAQKHYFDEIHEIDIL 168 (405)
T ss_dssp HHHHHHHTCSEEEEEEEE
T ss_pred HHHHHHhccCcccEEEEE
Confidence 7777664 3 25566653
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-06 Score=80.03 Aligned_cols=123 Identities=15% Similarity=0.228 Sum_probs=82.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC---CCceeee-CC---ceeEEeecCc-cCCCCCcEEEecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF-QD---KAYTVEELTE-DSFDGVDIALFSA 109 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s---~G~~~~~-~~---~~~~v~~~d~-~~~~~~DvVf~a~ 109 (279)
+++||+|+||+|.+|+.+++.+.++ |.++|+.+..+.. .|+.... .+ ..+.+.+ +. +.+.++|+|+.++
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~--~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~-dl~~ll~~aDVvIDFT 96 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRR--KDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITD-DPESAFSNTEGILDFS 96 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTC--SSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBS-CHHHHTTSCSEEEECS
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccccchHHhhccCcCCceeeC-CHHHHhcCCCEEEEcC
Confidence 3589999999999999999999988 9999998876543 3443221 01 1122221 21 2245799999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHH
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIIC 176 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l 176 (279)
......+++..++++|+.||-.+.-| +++ ..+.|+... .+..++-.||-+.-..
T Consensus 97 ~p~a~~~~~~~~l~~Gv~vViGTTG~--~~e--------~~~~L~~aa---~~~~~~~a~N~SiGv~ 150 (288)
T 3ijp_A 97 QPQASVLYANYAAQKSLIHIIGTTGF--SKT--------EEAQIADFA---KYTTIVKSGNMSLGVN 150 (288)
T ss_dssp CHHHHHHHHHHHHHHTCEEEECCCCC--CHH--------HHHHHHHHH---TTSEEEECSCCCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC--CHH--------HHHHHHHHh---CcCCEEEECCCcHHHH
Confidence 99989999999999999988655544 211 012233211 1467888999776543
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.9e-06 Score=72.94 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=84.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC-CCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s~~~~ 118 (279)
|||+|||+ |.+|+.+++.|.+ +.++++.+.++..... . .+.+++ +.+ .++|+||.|+++....+++
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~---~g~~lv~v~d~~~~~~-------~-~~~~~~-~l~~~~~DvVv~~~~~~~~~~~~ 67 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLER---NGFEIAAILDVRGEHE-------K-MVRGID-EFLQREMDVAVEAASQQAVKDYA 67 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHH---TTCEEEEEECSSCCCT-------T-EESSHH-HHTTSCCSEEEECSCHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHhc---CCCEEEEEEecCcchh-------h-hcCCHH-HHhcCCCCEEEECCCHHHHHHHH
Confidence 58999995 9999999999884 5668776665542110 1 222221 123 5799999999999999999
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEee
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q 198 (279)
..++++|+.||+.++....+++.. .++. +..+. .+..++..+|+.... ..++.... +++++.+++++
T Consensus 68 ~~~l~~G~~vv~~~~~~~~~~~~~---~~l~-~~a~~-----~g~~~~i~~~~~g~~--~~~~~~~~--~~~~~~~~~~~ 134 (236)
T 2dc1_A 68 EKILKAGIDLIVLSTGAFADRDFL---SRVR-EVCRK-----TGRRVYIASGAIGGL--DAIFSASE--LIEEIVLTTRK 134 (236)
T ss_dssp HHHHHTTCEEEESCGGGGGSHHHH---HHHH-HHHHH-----HCCCEEECCTTCSCH--HHHHHTGG--GEEEEEEEEEE
T ss_pred HHHHHCCCcEEEECcccCChHHHH---HHHH-HHHHh-----cCCeEEecCccccCh--HHHHHhhc--cccEEEEEEEc
Confidence 999999999999887553222110 1221 11111 134555667665442 22333222 56777777777
Q ss_pred cc
Q 023678 199 AA 200 (279)
Q Consensus 199 ~v 200 (279)
+.
T Consensus 135 ~~ 136 (236)
T 2dc1_A 135 NW 136 (236)
T ss_dssp EG
T ss_pred Ch
Confidence 54
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.5e-07 Score=85.47 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=59.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeec-Cc----cCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEEL-TE----DSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~-d~----~~~~~~DvVf~a~g~~ 112 (279)
+|||+|+|| |+||+.+++.|.++ ..+. ++++.... ..+......+.+ |. |. +.++++|+|+.|+|..
T Consensus 16 ~mkilvlGa-G~vG~~~~~~L~~~--~~v~---~~~~~~~~~~~~~~~~~~~~~-d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 16 HMKVLILGA-GNIGRAIAWDLKDE--FDVY---IGDVNNENLEKVKEFATPLKV-DASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTT--SEEE---EEESCHHHHHHHTTTSEEEEC-CTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred ccEEEEECC-CHHHHHHHHHHhcC--CCeE---EEEcCHHHHHHHhccCCcEEE-ecCCHHHHHHHHhCCCEEEEecCCc
Confidence 689999998 99999999999765 4333 22221100 000000111111 22 11 1247899999999999
Q ss_pred hhhhhHHHHHhCCCEEEEcCCC
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
.....+..++++|+.+||+|..
T Consensus 89 ~~~~v~~~~~~~g~~yvD~s~~ 110 (365)
T 3abi_A 89 LGFKSIKAAIKSKVDMVDVSFM 110 (365)
T ss_dssp GHHHHHHHHHHHTCEEEECCCC
T ss_pred ccchHHHHHHhcCcceEeeecc
Confidence 9899999999999999999843
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.3e-06 Score=79.77 Aligned_cols=93 Identities=18% Similarity=0.318 Sum_probs=62.0
Q ss_pred cccCCCCCEEEEECcCcHHHHH-HHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC--CCCcEEEecC
Q 023678 33 MSYQESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSA 109 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~e-Ll~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~--~~~DvVf~a~ 109 (279)
|+++++++||+||| .|.+|+. .++.|.++ |.++++++.+++..-..-.+.+. -.+.+++ +.+ .++|+|+.|+
T Consensus 1 M~~~~~~~rvgiiG-~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~~~~~~~~~~-~~~~~~~-~ll~~~~~D~V~i~t 75 (364)
T 3e82_A 1 MSLSNNTINIALIG-YGFVGKTFHAPLIRSV--PGLNLAFVASRDEEKVKRDLPDV-TVIASPE-AAVQHPDVDLVVIAS 75 (364)
T ss_dssp ------CEEEEEEC-CSHHHHHTHHHHHHTS--TTEEEEEEECSCHHHHHHHCTTS-EEESCHH-HHHTCTTCSEEEECS
T ss_pred CCCCCCcceEEEEC-CCHHHHHHHHHHHhhC--CCeEEEEEEcCCHHHHHhhCCCC-cEECCHH-HHhcCCCCCEEEEeC
Confidence 55556679999999 5999997 77888777 89999988775431100011111 1122222 112 3689999999
Q ss_pred CCchhhhhHHHHHhCCCEEEE
Q 023678 110 GGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VID 130 (279)
|+....+++.+++++|..|+-
T Consensus 76 p~~~H~~~~~~al~aGk~Vl~ 96 (364)
T 3e82_A 76 PNATHAPLARLALNAGKHVVV 96 (364)
T ss_dssp CGGGHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHHHHHHHHHCCCcEEE
Confidence 999999999999999998874
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-05 Score=68.93 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=57.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEe--ecC-cc----CCCCCcEEEec
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVE--ELT-ED----SFDGVDIALFS 108 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~--~~d-~~----~~~~~DvVf~a 108 (279)
|+|++|.|.||||++|+.+++.|.+++ ..+++++. |+.. ...+. ...+.+. |+. .+ .+.++|+||.+
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G--~~~V~~~~-R~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~ 95 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQ--TIKQTLFA-RQPAKIHKPY--PTNSQIIMGDVLNHAALKQAMQGQDIVYAN 95 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCT--TEEEEEEE-SSGGGSCSSC--CTTEEEEECCTTCHHHHHHHHTTCSEEEEE
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCC--CceEEEEE-cChhhhcccc--cCCcEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence 446789999999999999999999874 35666654 3321 11111 1122222 332 11 24689999988
Q ss_pred CCCch----hhhhHHHHHhCCC-EEEEcCCCC
Q 023678 109 AGGSI----SKKFGPIAVEKGS-IVVDNSSAF 135 (279)
Q Consensus 109 ~g~~~----s~~~~~~~~~aG~-~VIDlS~~~ 135 (279)
++... ++.+++.+.+.|. ++|=.|+..
T Consensus 96 a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~ 127 (236)
T 3qvo_A 96 LTGEDLDIQANSVIAAMKACDVKRLIFVLSLG 127 (236)
T ss_dssp CCSTTHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred CCCCchhHHHHHHHHHHHHcCCCEEEEEecce
Confidence 87632 3455666667776 566667643
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=3.7e-06 Score=77.98 Aligned_cols=110 Identities=20% Similarity=0.250 Sum_probs=62.0
Q ss_pred ccccchhhhhccCCCCCCCCCcceeeeecccCCCCCEEEEECcCcHHHH-HHHHHHHcCCCCceEEEEEeecCCC-Ccee
Q 023678 5 SSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSA-GKQL 82 (279)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~-eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~ 82 (279)
|||....|--+..+.+.+...+ |+++||+||| +|.+|+ .+++.|.+. |.++++++.++... .+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~----------m~~~rigiIG-~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~~~~~~ 69 (350)
T 3rc1_A 3 SSHHHHHHENLYFQGHMENPAN----------ANPIRVGVIG-CADIAWRRALPALEAE--PLTEVTAIASRRWDRAKRF 69 (350)
T ss_dssp ---------------------------------CCEEEEEES-CCHHHHHTHHHHHHHC--TTEEEEEEEESSHHHHHHH
T ss_pred CccccccccceeeeccCCCCCC----------CCceEEEEEc-CcHHHHHHHHHHHHhC--CCeEEEEEEcCCHHHHHHH
Confidence 5666555544444444433322 3468999999 699998 789999887 89999988775421 1111
Q ss_pred ee-CCceeEEeecCccCC--CCCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 83 SF-QDKAYTVEELTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 83 ~~-~~~~~~v~~~d~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
.. .+.. .+.+++ +.+ .++|+|+.|+++....+++.+++++|..|+
T Consensus 70 a~~~g~~-~~~~~~-~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl 117 (350)
T 3rc1_A 70 TERFGGE-PVEGYP-ALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVL 117 (350)
T ss_dssp HHHHCSE-EEESHH-HHHTCTTCSEEEECCCGGGHHHHHHHHHHTTCEEE
T ss_pred HHHcCCC-CcCCHH-HHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCcEE
Confidence 10 0111 122322 112 368999999999999999999999999776
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.3e-06 Score=76.04 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=61.9
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC-CceeEEeecCccCC--CCCcEEEecCCCc
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-DKAYTVEELTEDSF--DGVDIALFSAGGS 112 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~-~~~~~v~~~d~~~~--~~~DvVf~a~g~~ 112 (279)
|+++||+||| +|.+|+.+++.|.+. +.++++++.+++.. .+..... +..-.+.+++ +.+ .++|+|+.|+|+.
T Consensus 3 m~~~rigiiG-~G~ig~~~~~~l~~~--~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~-~ll~~~~~D~V~i~tp~~ 78 (329)
T 3evn_A 3 LSKVRYGVVS-TAKVAPRFIEGVRLA--GNGEVVAVSSRTLESAQAFANKYHLPKAYDKLE-DMLADESIDVIYVATINQ 78 (329)
T ss_dssp --CEEEEEEB-CCTTHHHHHHHHHHH--CSEEEEEEECSCSSTTCC---CCCCSCEESCHH-HHHTCTTCCEEEECSCGG
T ss_pred CCceEEEEEe-chHHHHHHHHHHHhC--CCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHH-HHhcCCCCCEEEECCCcH
Confidence 4578999999 599999999999877 88999988775432 2222111 1111222221 112 3789999999999
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
...+++..++++|..|+
T Consensus 79 ~h~~~~~~al~aGk~Vl 95 (329)
T 3evn_A 79 DHYKVAKAALLAGKHVL 95 (329)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHCCCeEE
Confidence 99999999999999776
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-06 Score=78.71 Aligned_cols=89 Identities=10% Similarity=0.132 Sum_probs=62.0
Q ss_pred CCCCCEEEEECcCcHHHHH-HHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecCccCCCCCcEEEecCCCc
Q 023678 36 QESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~e-Ll~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
.|+++||+||| .|.+|+. +++.|.++ |.++++++.+++..- +.+.. .+... +.+++ +.+.++|+|+.|+|+.
T Consensus 3 ~M~~~~igiIG-~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~~~~~~a~~~~~~~-~~~~~-~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 3 AMKNIKMGMIG-LGSIAQKAYLPILTKS--ERFEFVGAFTPNKVKREKICSDYRIMP-FDSIE-SLAKKCDCIFLHSSTE 77 (308)
T ss_dssp --CCCEEEEEC-CSHHHHHHTHHHHTSC--SSSEEEEEECSCHHHHHHHHHHHTCCB-CSCHH-HHHTTCSEEEECCCGG
T ss_pred ccccCcEEEEe-cCHHHHHHHHHHHHhC--CCeEEEEEECCCHHHHHHHHHHcCCCC-cCCHH-HHHhcCCEEEEeCCcH
Confidence 35678999999 5999996 88988877 889999887654211 11110 01111 22221 1234899999999999
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
...+++..++++|..|+
T Consensus 78 ~h~~~~~~al~~gk~vl 94 (308)
T 3uuw_A 78 THYEIIKILLNLGVHVY 94 (308)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHCCCcEE
Confidence 99999999999999877
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=8.8e-06 Score=73.80 Aligned_cols=90 Identities=22% Similarity=0.288 Sum_probs=64.7
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcC-CCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC--CCCcEEEecC
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSA 109 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~-~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~--~~~DvVf~a~ 109 (279)
|...++++||+||| .|.+|+..++.|.+. ..+.++++.+.+++...+.. + +...+++ +.+ .++|+|+.|+
T Consensus 1 M~~~~~~~rvgiIG-~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~~~---g--~~~~~~~-ell~~~~vD~V~i~t 73 (294)
T 1lc0_A 1 MITNSGKFGVVVVG-VGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLD---E--VRQISLE-DALRSQEIDVAYICS 73 (294)
T ss_dssp CCCCCCSEEEEEEC-CSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEET---T--EEBCCHH-HHHHCSSEEEEEECS
T ss_pred CCCCCCcceEEEEE-EcHHHHHHHHHHhccccCCCEEEEEEECchHHHHHc---C--CCCCCHH-HHhcCCCCCEEEEeC
Confidence 44556679999999 599999999988651 02788999888765433211 1 1111211 112 3689999999
Q ss_pred CCchhhhhHHHHHhCCCEEE
Q 023678 110 GGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VI 129 (279)
|+....+++.+++++|..|+
T Consensus 74 p~~~H~~~~~~al~aGkhVl 93 (294)
T 1lc0_A 74 ESSSHEDYIRQFLQAGKHVL 93 (294)
T ss_dssp CGGGHHHHHHHHHHTTCEEE
T ss_pred CcHhHHHHHHHHHHCCCcEE
Confidence 99999999999999999766
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.00 E-value=6e-05 Score=64.10 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=58.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc------cCCCCCcEEEecCCCch
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE------DSFDGVDIALFSAGGSI 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~------~~~~~~DvVf~a~g~~~ 113 (279)
|||.|.||||++|+.+++.|.+++ .+++.+. |+.. +.....+......|+.. ..+.++|+||.+++...
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g---~~V~~~~-R~~~-~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~ 75 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD---YQIYAGA-RKVE-QVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG 75 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS---CEEEEEE-SSGG-GSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC---CEEEEEE-CCcc-chhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence 489999999999999999999875 3566554 3321 11011111222223322 23578999999988643
Q ss_pred ----------hhhhHHHHHhCCC-EEEEcCCCCC
Q 023678 114 ----------SKKFGPIAVEKGS-IVVDNSSAFR 136 (279)
Q Consensus 114 ----------s~~~~~~~~~aG~-~VIDlS~~~R 136 (279)
...+++.+.+.|. ++|=.|+.+-
T Consensus 76 ~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~ 109 (219)
T 3dqp_A 76 KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS 109 (219)
T ss_dssp SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence 3456666677776 6776777553
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.3e-05 Score=66.81 Aligned_cols=90 Identities=14% Similarity=0.223 Sum_probs=56.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ecC-c----cCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELT-E----DSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d-~----~~~~~~DvVf~a~g~ 111 (279)
|++|.|.||||++|+.|++.|.++++ +++.+. |+.. +..... ..+.+. |+. . ..+.++|+||.+++.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~---~V~~~~-r~~~-~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGF---EVTAVV-RHPE-KIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTC---EEEEEC-SCGG-GCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEE-cCcc-cchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 47999999999999999999998853 565553 3321 111110 123332 332 1 124689999999876
Q ss_pred c------------hhhhhHHHHHhCCC-EEEEcCCC
Q 023678 112 S------------ISKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 112 ~------------~s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
. .+..+++.+.+.|+ ++|=.|+.
T Consensus 78 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~ 113 (227)
T 3dhn_A 78 GWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA 113 (227)
T ss_dssp ------CCSHHHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCCh
Confidence 5 23445566667786 66666664
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-05 Score=71.48 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=70.6
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCCCCCcEEEecCCCchhh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
|+|+||+|+|+ |.+|+.+++.+.++ +. +++.+.++.... . . .+.+ .+++ +.+ ++|+++.++.+....
T Consensus 1 M~MmkI~ViGa-GrMG~~i~~~l~~~--~~-eLva~~d~~~~~-~---~--gv~v~~dl~-~l~-~~DVvIDft~p~a~~ 68 (243)
T 3qy9_A 1 MASMKILLIGY-GAMNQRVARLAEEK--GH-EIVGVIENTPKA-T---T--PYQQYQHIA-DVK-GADVAIDFSNPNLLF 68 (243)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHT--TC-EEEEEECSSCC------C--CSCBCSCTT-TCT-TCSEEEECSCHHHHH
T ss_pred CCceEEEEECc-CHHHHHHHHHHHhC--CC-EEEEEEecCccc-c---C--CCceeCCHH-HHh-CCCEEEEeCChHHHH
Confidence 45789999999 99999999999988 77 888876654331 1 0 1112 1222 223 789999887777777
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHH
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTII 175 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~ 175 (279)
+++. +++|+.+|--+..| .++ ..+.+.... .+..++-.||-+.-.
T Consensus 69 ~~~~--l~~g~~vVigTTG~--s~e--------~~~~l~~aa---~~~~v~~a~N~S~Gv 113 (243)
T 3qy9_A 69 PLLD--EDFHLPLVVATTGE--KEK--------LLNKLDELS---QNMPVFFSANMSYGV 113 (243)
T ss_dssp HHHT--SCCCCCEEECCCSS--HHH--------HHHHHHHHT---TTSEEEECSSCCHHH
T ss_pred HHHH--HhcCCceEeCCCCC--CHH--------HHHHHHHHH---hcCCEEEECCccHHH
Confidence 7775 78899877555544 110 012222211 146788888876544
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-05 Score=74.56 Aligned_cols=87 Identities=13% Similarity=0.180 Sum_probs=62.9
Q ss_pred CCCCEEEEECcCcHHHHH-HHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCC--CCCcEEEecCCCc
Q 023678 37 ESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSF--DGVDIALFSAGGS 112 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~e-Ll~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~--~~~DvVf~a~g~~ 112 (279)
|+++||+||| .|.+|+. .++.|.++ |.++++++.+++.. + .........+ .+++ +.+ .++|+|+.|+|+.
T Consensus 3 ~~~~rvgiiG-~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~-~-~~~~~~~~~~~~~~~-~ll~~~~vD~V~i~tp~~ 76 (362)
T 3fhl_A 3 LEIIKTGLAA-FGMSGQVFHAPFISTN--PHFELYKIVERSKE-L-SKERYPQASIVRSFK-ELTEDPEIDLIVVNTPDN 76 (362)
T ss_dssp CCCEEEEESC-CSHHHHHTTHHHHHHC--TTEEEEEEECSSCC-G-GGTTCTTSEEESCSH-HHHTCTTCCEEEECSCGG
T ss_pred CCceEEEEEC-CCHHHHHHHHHHHhhC--CCeEEEEEEcCCHH-H-HHHhCCCCceECCHH-HHhcCCCCCEEEEeCChH
Confidence 4578999999 5999997 78888777 89999999876532 2 1111111222 2322 112 3589999999999
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
...+++.+++++|..|+
T Consensus 77 ~H~~~~~~al~aGkhVl 93 (362)
T 3fhl_A 77 THYEYAGMALEAGKNVV 93 (362)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHCCCeEE
Confidence 99999999999999776
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.7e-05 Score=64.85 Aligned_cols=91 Identities=20% Similarity=0.270 Sum_probs=54.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ecC-cc----CCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELT-ED----SFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d-~~----~~~~~DvVf~a~g~ 111 (279)
.++|.|.||||++|+.+++.|.++++ +++.+. |+..... ......+.+. |+. .+ .+.++|+||.+++.
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~---~V~~~~-r~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~ 77 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGY---EVTVLV-RDSSRLP-SEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEE-SCGGGSC-SSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC---eEEEEE-eChhhcc-cccCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence 36899999999999999999998753 555553 3321110 0001122222 332 11 24689999999875
Q ss_pred ch-----------hhhhHHHHHhCCC-EEEEcCCC
Q 023678 112 SI-----------SKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 112 ~~-----------s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
.. ...+++.+.+.|+ ++|=.|+.
T Consensus 78 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~ 112 (206)
T 1hdo_A 78 RNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112 (206)
T ss_dssp TTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred CCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence 42 3445555556666 56656665
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.96 E-value=5.7e-06 Score=75.91 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=62.7
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHH-cCCCCceEEEEEeecCCCC-ceeeeC-CceeEEeecCccCC--CCCcEEEe
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRSAG-KQLSFQ-DKAYTVEELTEDSF--DGVDIALF 107 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~-~~~~p~~~l~~l~s~~s~G-~~~~~~-~~~~~v~~~d~~~~--~~~DvVf~ 107 (279)
|+..++++||+||| +|.+|+..++.|. +. +.++++++.+++..- +.+... +....+.+++ +.+ .++|+|+.
T Consensus 2 m~~~~~~~~v~iiG-~G~ig~~~~~~l~~~~--~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~-~~l~~~~~D~V~i 77 (346)
T 3cea_A 2 MVTTRKPLRAAIIG-LGRLGERHARHLVNKI--QGVKLVAACALDSNQLEWAKNELGVETTYTNYK-DMIDTENIDAIFI 77 (346)
T ss_dssp ---CCCCEEEEEEC-CSTTHHHHHHHHHHTC--SSEEEEEEECSCHHHHHHHHHTTCCSEEESCHH-HHHTTSCCSEEEE
T ss_pred CCCCCCcceEEEEc-CCHHHHHHHHHHHhcC--CCcEEEEEecCCHHHHHHHHHHhCCCcccCCHH-HHhcCCCCCEEEE
Confidence 55556779999999 5999999999988 66 788988887653211 111111 1111122221 112 26899999
Q ss_pred cCCCchhhhhHHHHHhCCCEEE
Q 023678 108 SAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 108 a~g~~~s~~~~~~~~~aG~~VI 129 (279)
|+|+....+++.+++++|..|+
T Consensus 78 ~tp~~~h~~~~~~al~~G~~v~ 99 (346)
T 3cea_A 78 VAPTPFHPEMTIYAMNAGLNVF 99 (346)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEE
T ss_pred eCChHhHHHHHHHHHHCCCEEE
Confidence 9999999999999999999776
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.5e-05 Score=70.56 Aligned_cols=92 Identities=11% Similarity=0.082 Sum_probs=56.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-c----cCCCCCcEEEecCCCc--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-E----DSFDGVDIALFSAGGS-- 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g~~-- 112 (279)
|||.|.||||++|+.+++.|.++ +..+++.+..+.+....+...+..+...|+. . ..+.++|+||.+.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~--~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~ 78 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIAN--HIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHP 78 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT--TCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCS
T ss_pred CEEEEEcCCchHHHHHHHHHhhC--CCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCcc
Confidence 57999999999999999999876 3445666642221111111112222222432 1 2357899999998752
Q ss_pred ------hhhhhHHHHHhCCC-EEEEcCC
Q 023678 113 ------ISKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 113 ------~s~~~~~~~~~aG~-~VIDlS~ 133 (279)
..+.+++.+.++|+ ++|=.|+
T Consensus 79 ~~~~~~~~~~l~~aa~~~gv~~iv~~Ss 106 (289)
T 3e48_A 79 SFKRIPEVENLVYAAKQSGVAHIIFIGY 106 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred chhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 33556677778886 4664554
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=73.20 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=64.5
Q ss_pred cCCCCCEEEEECcCcHHHH-HHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc--cCCCCCcEEEecCCC
Q 023678 35 YQESAPSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE--DSFDGVDIALFSAGG 111 (279)
Q Consensus 35 ~~~~~~kVaIiGATG~VG~-eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~--~~~~~~DvVf~a~g~ 111 (279)
++|+++||+||| .|.+|+ ..++.|.+. |.++++++++++..- .+.. .+.+++. ++..++|+|+.|+|+
T Consensus 21 ~~M~~~rvgiiG-~G~ig~~~~~~~l~~~--~~~~lvav~d~~~~~-----~g~~-~~~~~~~ll~~~~~vD~V~i~tp~ 91 (330)
T 4ew6_A 21 QSMSPINLAIVG-VGKIVRDQHLPSIAKN--ANFKLVATASRHGTV-----EGVN-SYTTIEAMLDAEPSIDAVSLCMPP 91 (330)
T ss_dssp CCCCCEEEEEEC-CSHHHHHTHHHHHHHC--TTEEEEEEECSSCCC-----TTSE-EESSHHHHHHHCTTCCEEEECSCH
T ss_pred ccCCCceEEEEe-cCHHHHHHHHHHHHhC--CCeEEEEEEeCChhh-----cCCC-ccCCHHHHHhCCCCCCEEEEeCCc
Confidence 346678999999 699998 789999887 899999998765321 1111 1222221 111468999999999
Q ss_pred chhhhhHHHHHhCCCEEE
Q 023678 112 SISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VI 129 (279)
....+++.+++++|..|+
T Consensus 92 ~~H~~~~~~al~aGkhVl 109 (330)
T 4ew6_A 92 QYRYEAAYKALVAGKHVF 109 (330)
T ss_dssp HHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHcCCcEE
Confidence 999999999999999887
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.6e-05 Score=69.63 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=60.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~ 119 (279)
|||+|+||+|.+|+.+++.+.++ |..+++.+..+. .+++.....++|+|+.++.+....+++.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~--~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p~a~~~~~~ 63 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA--DDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTHPDVVMGNLE 63 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC--TTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSCTTTHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEccC---------------CCHHHHhccCCcEEEEccChHHHHHHHH
Confidence 58999999999999999999877 788988776432 0111100136899999999999999999
Q ss_pred HHHhCCCEEEEcCCCC
Q 023678 120 IAVEKGSIVVDNSSAF 135 (279)
Q Consensus 120 ~~~~aG~~VIDlS~~~ 135 (279)
.++++|+.+|-.+..|
T Consensus 64 ~a~~~g~~~VigTTG~ 79 (245)
T 1p9l_A 64 FLIDNGIHAVVGTTGF 79 (245)
T ss_dssp HHHHTTCEEEECCCCC
T ss_pred HHHHcCCCEEEcCCCC
Confidence 9999999877555543
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.8e-05 Score=72.41 Aligned_cols=86 Identities=20% Similarity=0.292 Sum_probs=61.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC--------ceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP--------YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSA 109 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p--------~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~ 109 (279)
+++||+|+| +|.||+.+++.|.++ + .++++.+++++.. +.-.+. ......+++ +.+ ++|+|+.|+
T Consensus 2 k~irvgIiG-~G~VG~~~~~~l~~~--~~~l~~~g~~~~lvaV~d~~~~-~~~~~~-~~~~~~d~~-~ll-~iDvVve~t 74 (332)
T 2ejw_A 2 EALKIALLG-GGTVGSAFYNLVLER--AEELSAFGVVPRFLGVLVRDPR-KPRAIP-QELLRAEPF-DLL-EADLVVEAM 74 (332)
T ss_dssp EEEEEEEEC-CSHHHHHHHHHHHHT--GGGGGGGTEEEEEEEEECSCTT-SCCSSC-GGGEESSCC-CCT-TCSEEEECC
T ss_pred CeeEEEEEc-CCHHHHHHHHHHHhC--hhhHhhcCCCEEEEEEEECCHH-HhhccC-cccccCCHH-HHh-CCCEEEECC
Confidence 458999999 799999999999887 5 6788888776522 211111 111222322 223 899999999
Q ss_pred CCc-hhhhhHHHHHhCCCEEEE
Q 023678 110 GGS-ISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 110 g~~-~s~~~~~~~~~aG~~VID 130 (279)
++. .+.+++.+++++|..||-
T Consensus 75 ~~~~~a~~~~~~AL~aGKhVVt 96 (332)
T 2ejw_A 75 GGVEAPLRLVLPALEAGIPLIT 96 (332)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEE
T ss_pred CCcHHHHHHHHHHHHcCCeEEE
Confidence 987 567889899999999985
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.90 E-value=9.6e-06 Score=74.61 Aligned_cols=86 Identities=17% Similarity=0.259 Sum_probs=62.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEE-eecCccCCC--CCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTV-EELTEDSFD--GVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v-~~~d~~~~~--~~DvVf~a~g~~~s 114 (279)
++||+||| .|.+|+.+++.|.++ |.++++.+.+++... +.+..... ..+ .+++ +.+. ++|+|+.|+++...
T Consensus 4 ~~rvgiiG-~G~~g~~~~~~l~~~--~~~~l~av~d~~~~~~~~~a~~~g-~~~~~~~~-~~l~~~~~D~V~i~tp~~~h 78 (344)
T 3euw_A 4 TLRIALFG-AGRIGHVHAANIAAN--PDLELVVIADPFIEGAQRLAEANG-AEAVASPD-EVFARDDIDGIVIGSPTSTH 78 (344)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHC--TTEEEEEEECSSHHHHHHHHHTTT-CEEESSHH-HHTTCSCCCEEEECSCGGGH
T ss_pred ceEEEEEC-CcHHHHHHHHHHHhC--CCcEEEEEECCCHHHHHHHHHHcC-CceeCCHH-HHhcCCCCCEEEEeCCchhh
Confidence 58999999 599999999999887 899999887654311 11111111 222 2222 2233 78999999999999
Q ss_pred hhhHHHHHhCCCEEE
Q 023678 115 KKFGPIAVEKGSIVV 129 (279)
Q Consensus 115 ~~~~~~~~~aG~~VI 129 (279)
.+++..++++|..|+
T Consensus 79 ~~~~~~al~~gk~v~ 93 (344)
T 3euw_A 79 VDLITRAVERGIPAL 93 (344)
T ss_dssp HHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHcCCcEE
Confidence 999999999999776
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.90 E-value=1.5e-05 Score=74.05 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=62.6
Q ss_pred CCCCEEEEECcCcHHHHH-HHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCC--CCCcEEEecCCCc
Q 023678 37 ESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSF--DGVDIALFSAGGS 112 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~e-Ll~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~--~~~DvVf~a~g~~ 112 (279)
|+++||+||| .|.+|+. .++.|.++ |.++++++.+++.. + .........+ .+++ +.+ .++|+|+.|+|+.
T Consensus 3 m~~~rvgiiG-~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~-~-~~~~~~~~~~~~~~~-~ll~~~~vD~V~i~tp~~ 76 (358)
T 3gdo_A 3 LDTIKVGILG-YGLSGSVFHGPLLDVL--DEYQISKIMTSRTE-E-VKRDFPDAEVVHELE-EITNDPAIELVIVTTPSG 76 (358)
T ss_dssp TTCEEEEEEC-CSHHHHHTTHHHHTTC--TTEEEEEEECSCHH-H-HHHHCTTSEEESSTH-HHHTCTTCCEEEECSCTT
T ss_pred CCcceEEEEc-cCHHHHHHHHHHHhhC--CCeEEEEEEcCCHH-H-HHhhCCCCceECCHH-HHhcCCCCCEEEEcCCcH
Confidence 3468999999 5999997 67888766 89999998875431 1 1110001222 2322 112 3689999999999
Q ss_pred hhhhhHHHHHhCCCEEEE
Q 023678 113 ISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VID 130 (279)
...+++.+++++|..|+-
T Consensus 77 ~H~~~~~~al~aGkhVl~ 94 (358)
T 3gdo_A 77 LHYEHTMACIQAGKHVVM 94 (358)
T ss_dssp THHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCeEEE
Confidence 999999999999998773
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.5e-05 Score=66.38 Aligned_cols=91 Identities=24% Similarity=0.305 Sum_probs=55.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCc-eeEEeecC---ccCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDK-AYTVEELT---EDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~-~~~v~~~d---~~~~~~~DvVf~a~g~~~ 113 (279)
.++|.|.||||++|+.+++.|.++++ +++++. |+... ..+...+. .....|+. .+.+.++|+||.+++...
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~---~V~~~~-R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~~ 96 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGH---EPVAMV-RNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSGP 96 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE-SSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCCT
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCC---eEEEEE-CChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCCC
Confidence 47999999999999999999998854 555553 43221 11111111 22222332 233578999999988542
Q ss_pred --------------hhhhHHHHHhCCC-EEEEcCC
Q 023678 114 --------------SKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 114 --------------s~~~~~~~~~aG~-~VIDlS~ 133 (279)
+..+++.+.+.|. ++|=.|+
T Consensus 97 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 131 (236)
T 3e8x_A 97 HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSS 131 (236)
T ss_dssp TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEec
Confidence 2344455555664 5665666
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.89 E-value=9.1e-06 Score=73.98 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=60.2
Q ss_pred CCCCEEEEECcCcHHHHH-HHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecCccCC-CCCcEEEecCCCc
Q 023678 37 ESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELTEDSF-DGVDIALFSAGGS 112 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~e-Ll~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~~~-~~~DvVf~a~g~~ 112 (279)
|+++||+|||+ |.+|+. +++.|.+. |.++++.+.+++... +.+.. .+ +.+.+ +.+++ .++|+|+.|+|+.
T Consensus 3 m~~~~vgiiG~-G~~g~~~~~~~l~~~--~~~~lvav~d~~~~~~~~~~~~~g--~~~~~-~~~~l~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 3 LKKLRIGVVGL-GGIAQKAWLPVLAAA--SDWTLQGAWSPTRAKALPICESWR--IPYAD-SLSSLAASCDAVFVHSSTA 76 (319)
T ss_dssp --CEEEEEECC-STHHHHTHHHHHHSC--SSEEEEEEECSSCTTHHHHHHHHT--CCBCS-SHHHHHTTCSEEEECSCTT
T ss_pred CCcceEEEECC-CHHHHHHHHHHHHhC--CCeEEEEEECCCHHHHHHHHHHcC--CCccC-cHHHhhcCCCEEEEeCCch
Confidence 45789999995 999996 88988876 889998887654321 11110 01 11111 11122 4789999999999
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
...+++..++++|..|+
T Consensus 77 ~h~~~~~~al~~G~~v~ 93 (319)
T 1tlt_A 77 SHFDVVSTLLNAGVHVC 93 (319)
T ss_dssp HHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHcCCeEE
Confidence 99999999999999665
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.89 E-value=7.9e-06 Score=75.15 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=62.4
Q ss_pred CCCEEEEECcCcHHHHH-HHHHHHcCCCCceEEEEEeecCCC-Cceeee-CCceeEEeecCccCC--CCCcEEEecCCCc
Q 023678 38 SAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-QDKAYTVEELTEDSF--DGVDIALFSAGGS 112 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~e-Ll~lL~~~~~p~~~l~~l~s~~s~-G~~~~~-~~~~~~v~~~d~~~~--~~~DvVf~a~g~~ 112 (279)
+|+|||||| +|.+|+. ++..|.+. |.++++++++++.. .+.... .+..-.+.+++ +.+ .++|+|+.|+|+.
T Consensus 22 ~mirigiIG-~G~ig~~~~~~~~~~~--~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~-ell~~~~iDaV~I~tP~~ 97 (350)
T 4had_A 22 SMLRFGIIS-TAKIGRDNVVPAIQDA--ENCVVTAIASRDLTRAREMADRFSVPHAFGSYE-EMLASDVIDAVYIPLPTS 97 (350)
T ss_dssp CCEEEEEES-CCHHHHHTHHHHHHHC--SSEEEEEEECSSHHHHHHHHHHHTCSEEESSHH-HHHHCSSCSEEEECSCGG
T ss_pred CccEEEEEc-ChHHHHHHHHHHHHhC--CCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHH-HHhcCCCCCEEEEeCCCc
Confidence 478999999 6999975 67888877 99999999876421 111110 01111222322 112 4689999999999
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
...+++.+++++|..|+
T Consensus 98 ~H~~~~~~al~aGkhVl 114 (350)
T 4had_A 98 QHIEWSIKAADAGKHVV 114 (350)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred hhHHHHHHHHhcCCEEE
Confidence 99999999999999887
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.8e-06 Score=75.40 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=62.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCC--CCCcEEEecCCCch
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSF--DGVDIALFSAGGSI 113 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~--~~~DvVf~a~g~~~ 113 (279)
|+++||+||| .|.+|+..++.|.+. |.++++++.+++....... ....+.+ .+++ +.+ .++|+|+.|+|+..
T Consensus 3 m~~~~vgiiG-~G~~g~~~~~~l~~~--~~~~l~av~d~~~~~~~~a-~~~g~~~~~~~~-~ll~~~~~D~V~i~tp~~~ 77 (359)
T 3e18_A 3 LKKYQLVIVG-YGGMGSYHVTLASAA--DNLEVHGVFDILAEKREAA-AQKGLKIYESYE-AVLADEKVDAVLIATPNDS 77 (359)
T ss_dssp CCCEEEEEEC-CSHHHHHHHHHHHTS--TTEEEEEEECSSHHHHHHH-HTTTCCBCSCHH-HHHHCTTCCEEEECSCGGG
T ss_pred CCcCcEEEEC-cCHHHHHHHHHHHhC--CCcEEEEEEcCCHHHHHHH-HhcCCceeCCHH-HHhcCCCCCEEEEcCCcHH
Confidence 4578999999 699999999999877 8999998876542111100 0001111 1111 112 37899999999999
Q ss_pred hhhhHHHHHhCCCEEE
Q 023678 114 SKKFGPIAVEKGSIVV 129 (279)
Q Consensus 114 s~~~~~~~~~aG~~VI 129 (279)
..+++.+++++|..|+
T Consensus 78 h~~~~~~al~aGkhVl 93 (359)
T 3e18_A 78 HKELAISALEAGKHVV 93 (359)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCCEE
Confidence 9999999999999776
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.86 E-value=2e-05 Score=72.59 Aligned_cols=88 Identities=14% Similarity=0.195 Sum_probs=60.9
Q ss_pred CCEEEEECcCcHHHHH-HHH-HHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCC--CCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQE-FLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSF--DGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~e-Ll~-lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~--~~~DvVf~a~g~~~ 113 (279)
++||+||| .|.+|+. .++ .|..+ |.++++++.+++..............+ .+++ +.+ .++|+|+.|+|+..
T Consensus 2 ~~rvgiiG-~G~~g~~~~~~~~~~~~--~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~D~V~i~tp~~~ 77 (345)
T 3f4l_A 2 VINCAFIG-FGKSTTRYHLPYVLNRK--DSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLD-EVLNDPDVKLVVVCTHADS 77 (345)
T ss_dssp CEEEEEEC-CSHHHHHHTHHHHTTCT--TTEEEEEEECSSCCGGGGSGGGTTCEEESCTH-HHHTCTTEEEEEECSCGGG
T ss_pred ceEEEEEe-cCHHHHHHHHHHHHhcC--CCeEEEEEEcCCHhHHHHHHhcCCCceECCHH-HHhcCCCCCEEEEcCChHH
Confidence 57999999 6999986 566 55655 899999988764322111111111222 2322 112 35899999999999
Q ss_pred hhhhHHHHHhCCCEEEE
Q 023678 114 SKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 114 s~~~~~~~~~aG~~VID 130 (279)
..+++.+++++|..|+-
T Consensus 78 h~~~~~~al~aGk~Vl~ 94 (345)
T 3f4l_A 78 HFEYAKRALEAGKNVLV 94 (345)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCcEEE
Confidence 99999999999998873
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.9e-05 Score=72.87 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=60.5
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHc-----CCCCceEEEEEeecCCCC-ceeee-CCceeEEeecCccCC--CCCcEEE
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSD-----RDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELTEDSF--DGVDIAL 106 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~-----~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~~~--~~~DvVf 106 (279)
.|+++|||||| +|++|+.-++.+.. .++|.++++++++++..- +.... .+..-.+.+++ +.+ .++|+|+
T Consensus 22 ~MkkirvgiIG-~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~-ell~~~~iDaV~ 99 (393)
T 4fb5_A 22 SMKPLGIGLIG-TGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWR-ALIADPEVDVVS 99 (393)
T ss_dssp --CCCEEEEEC-CSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHH-HHHHCTTCCEEE
T ss_pred CCCCccEEEEc-CCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHH-HHhcCCCCcEEE
Confidence 36779999999 79999976665432 124788999998764321 11111 01111222322 111 4689999
Q ss_pred ecCCCchhhhhHHHHHhCCCEEE
Q 023678 107 FSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 107 ~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
.|+|+....+++.+++++|+.|+
T Consensus 100 IatP~~~H~~~a~~al~aGkhVl 122 (393)
T 4fb5_A 100 VTTPNQFHAEMAIAALEAGKHVW 122 (393)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEE
T ss_pred ECCChHHHHHHHHHHHhcCCeEE
Confidence 99999999999999999999887
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.6e-05 Score=70.22 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=61.6
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCc-cCCCCCcEEEecCC
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTE-DSFDGVDIALFSAG 110 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g 110 (279)
|+...++|||+|||+ |.+|+.+.+.|.+.++. ++.+.+++... ..+... ..+.+.. +. +.+.++|+||.|++
T Consensus 4 m~~~~~~m~i~iiG~-G~mG~~~a~~l~~~g~~---~v~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~Dvvi~av~ 77 (266)
T 3d1l_A 4 MKRSIEDTPIVLIGA-GNLATNLAKALYRKGFR---IVQVYSRTEESARELAQK-VEAEYTT-DLAEVNPYAKLYIVSLK 77 (266)
T ss_dssp ---CGGGCCEEEECC-SHHHHHHHHHHHHHTCC---EEEEECSSHHHHHHHHHH-TTCEEES-CGGGSCSCCSEEEECCC
T ss_pred hhcCCCCCeEEEEcC-CHHHHHHHHHHHHCCCe---EEEEEeCCHHHHHHHHHH-cCCceeC-CHHHHhcCCCEEEEecC
Confidence 444333579999995 99999999999887543 34444443210 011100 0122221 22 33568999999999
Q ss_pred CchhhhhHHHHHh---CCCEEEEcCCCCCC
Q 023678 111 GSISKKFGPIAVE---KGSIVVDNSSAFRM 137 (279)
Q Consensus 111 ~~~s~~~~~~~~~---aG~~VIDlS~~~R~ 137 (279)
.....+.+..+.+ .|..|||+++..-.
T Consensus 78 ~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~ 107 (266)
T 3d1l_A 78 DSAFAELLQGIVEGKREEALMVHTAGSIPM 107 (266)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEECCTTSCG
T ss_pred HHHHHHHHHHHHhhcCCCcEEEECCCCCch
Confidence 9877777776654 68899999887643
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=3.3e-05 Score=70.90 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=60.2
Q ss_pred ccccchhhhhccCCCCCCCCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eee
Q 023678 5 SSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLS 83 (279)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~ 83 (279)
|||....|--.-.|+..--++|+=. |. ++..+||+||| .|.+|+.+.+.|.+.+++ .++..+ +++.... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~kI~IIG-~G~mG~slA~~l~~~G~~-~~V~~~-dr~~~~~~~a~ 75 (314)
T 3ggo_A 3 SSHHHHHHSSGLVPRGSHMKNIIKI---LK-SLSMQNVLIVG-VGFMGGSFAKSLRRSGFK-GKIYGY-DINPESISKAV 75 (314)
T ss_dssp -----------------------------C-CCSCSEEEEES-CSHHHHHHHHHHHHTTCC-SEEEEE-CSCHHHHHHHH
T ss_pred CcccccccccCccccccCcCcCCch---hh-hcCCCEEEEEe-eCHHHHHHHHHHHhCCCC-CEEEEE-ECCHHHHHHHH
Confidence 5666555544445554433344322 11 23357999999 799999999999988653 244444 3322100 000
Q ss_pred eCCceeEE-eecCcc-CCCCCcEEEecCCCchhhhhHHHHH---hCCCEEEEcCCC
Q 023678 84 FQDKAYTV-EELTED-SFDGVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSA 134 (279)
Q Consensus 84 ~~~~~~~v-~~~d~~-~~~~~DvVf~a~g~~~s~~~~~~~~---~aG~~VIDlS~~ 134 (279)
..+..... .++ .+ .+.++|+||.|++.....+.+..+. ..|+.|+|.++.
T Consensus 76 ~~G~~~~~~~~~-~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d~~Sv 130 (314)
T 3ggo_A 76 DLGIIDEGTTSI-AKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSV 130 (314)
T ss_dssp HTTSCSEEESCT-TGGGGGCCSEEEECSCGGGHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred HCCCcchhcCCH-HHHhhccCCEEEEeCCHHHHHHHHHHHhhccCCCcEEEECCCC
Confidence 01111012 122 23 4678999999999987777666553 578999999875
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.82 E-value=2e-05 Score=66.93 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=53.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecC---ccCCCCCcEEEecCCCc---
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT---EDSFDGVDIALFSAGGS--- 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d---~~~~~~~DvVf~a~g~~--- 112 (279)
|||.|.||||++|+.|++.|.++++ +++++. |+... ..+...+......|+. .+.+.++|+||.+++..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~---~V~~~~-R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~ 76 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH---EVLAVV-RDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGS 76 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE-SCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTS
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC---EEEEEE-ecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCc
Confidence 5899999999999999999998854 555553 33211 0000011122222322 12357899999998763
Q ss_pred --------hhhhhHHHHHhCCCEEEEcCC
Q 023678 113 --------ISKKFGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 113 --------~s~~~~~~~~~aG~~VIDlS~ 133 (279)
.++.+++.+.++|.++|=.|+
T Consensus 77 ~~~~~n~~~~~~l~~a~~~~~~~~v~~SS 105 (224)
T 3h2s_A 77 GRGYLHLDFATHLVSLLRNSDTLAVFILG 105 (224)
T ss_dssp SCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred chhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 123344444556766776665
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.81 E-value=3.1e-05 Score=71.55 Aligned_cols=86 Identities=12% Similarity=0.198 Sum_probs=62.1
Q ss_pred CCEEEEECcCcHHHH-HHHHHHHcCCCCceEEEEEeecCCCCceeeeC--CceeEE-eecCccCC--CCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ--DKAYTV-EELTEDSF--DGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~-eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~--~~~~~v-~~~d~~~~--~~~DvVf~a~g~~ 112 (279)
++||+||| .|.+|+ ..++.|.++ |.++++++.+++ ..+.+... .....+ .+++ +.+ .++|+|+.|+|+.
T Consensus 2 ~~rvgiiG-~G~~g~~~~~~~l~~~--~~~~l~av~d~~-~~~~~a~~~~~~~~~~~~~~~-~ll~~~~~D~V~i~tp~~ 76 (349)
T 3i23_A 2 TVKMGFIG-FGKSANRYHLPYVMIR--ETLEVKTIFDLH-VNEKAAAPFKEKGVNFTADLN-ELLTDPEIELITICTPAH 76 (349)
T ss_dssp CEEEEEEC-CSHHHHHTTHHHHTTC--TTEEEEEEECTT-CCHHHHHHHHTTTCEEESCTH-HHHSCTTCCEEEECSCGG
T ss_pred eeEEEEEc-cCHHHHHHHHHHHhhC--CCeEEEEEECCC-HHHHHHHhhCCCCCeEECCHH-HHhcCCCCCEEEEeCCcH
Confidence 47999999 699998 577778776 899999998866 33332211 011222 2322 112 3689999999999
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
...+++.+++++|..|+
T Consensus 77 ~h~~~~~~al~aGk~Vl 93 (349)
T 3i23_A 77 THYDLAKQAILAGKSVI 93 (349)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCEEE
Confidence 99999999999999877
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.81 E-value=3.4e-05 Score=65.11 Aligned_cols=90 Identities=12% Similarity=0.184 Sum_probs=54.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecC---ccCCCCCcEEEecCCCch--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT---EDSFDGVDIALFSAGGSI-- 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d---~~~~~~~DvVf~a~g~~~-- 113 (279)
|||.|.||||++|+.|++.|.++++ +++++. |+... ..+. .+......|+. .+.+.++|+||.+++...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~---~V~~~~-R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~ 75 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH---EVTAIV-RNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDE 75 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE-SCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTT
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC---EEEEEE-cCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcCCccc
Confidence 5899999999999999999998853 555553 33211 1111 11122222322 123578999999988642
Q ss_pred -------hhhhHHHHHhCC-CEEEEcCCC
Q 023678 114 -------SKKFGPIAVEKG-SIVVDNSSA 134 (279)
Q Consensus 114 -------s~~~~~~~~~aG-~~VIDlS~~ 134 (279)
++.+++.+.++| .++|=.|+.
T Consensus 76 ~~~~~~~~~~l~~a~~~~~~~~~v~~SS~ 104 (221)
T 3ew7_A 76 AEKHVTSLDHLISVLNGTVSPRLLVVGGA 104 (221)
T ss_dssp TTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred cchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence 244555555564 456656654
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=3.6e-05 Score=70.37 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=62.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCc-c--------CCCCCcEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTE-D--------SFDGVDIALF 107 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~-~--------~~~~~DvVf~ 107 (279)
+|+||+|||+.|++|+..++.|.+. ..+++++.+++..............+ .+++. . .-.++|+|+.
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~---~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I 78 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEV---GGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSI 78 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHT---TCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred CceEEEEECCChHHHHHHHHHHHhC---CCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEE
Confidence 3689999998899999999999875 36888887765432211111111222 22221 0 1247999999
Q ss_pred cCCCchhhhhHHHHHhCCCEEE
Q 023678 108 SAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 108 a~g~~~s~~~~~~~~~aG~~VI 129 (279)
|+|+....+++.+++++|+.|+
T Consensus 79 ~tP~~~H~~~~~~al~aGkhVl 100 (312)
T 3o9z_A 79 ASPNHLHYPQIRMALRLGANAL 100 (312)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEE
T ss_pred CCCchhhHHHHHHHHHCCCeEE
Confidence 9999999999999999999887
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.9e-05 Score=73.40 Aligned_cols=89 Identities=19% Similarity=0.186 Sum_probs=62.2
Q ss_pred CCCCEEEEECcCcHHHHH-HHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCcee-EEeecCccCC--CCCcEEEecCCC
Q 023678 37 ESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAY-TVEELTEDSF--DGVDIALFSAGG 111 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~e-Ll~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~-~v~~~d~~~~--~~~DvVf~a~g~ 111 (279)
|+++||+||| .|.+|+. +++.|.+. |.++++++.+++..- +......... .+.+++ +.+ .++|+|+.|+|+
T Consensus 3 M~~~rigiIG-~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~-~ll~~~~vD~V~i~tp~ 78 (359)
T 3m2t_A 3 LSLIKVGLVG-IGAQMQENLLPSLLQM--QDIRIVAACDSDLERARRVHRFISDIPVLDNVP-AMLNQVPLDAVVMAGPP 78 (359)
T ss_dssp CCCEEEEEEC-CSHHHHHTHHHHHHTC--TTEEEEEEECSSHHHHGGGGGTSCSCCEESSHH-HHHHHSCCSEEEECSCH
T ss_pred CCcceEEEEC-CCHHHHHHHHHHHHhC--CCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHH-HHhcCCCCCEEEEcCCc
Confidence 4578999999 6999985 88999877 899999887654211 1111110011 122221 112 368999999999
Q ss_pred chhhhhHHHHHhCCCEEE
Q 023678 112 SISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VI 129 (279)
....+++.+++++|..|+
T Consensus 79 ~~H~~~~~~al~aGkhVl 96 (359)
T 3m2t_A 79 QLHFEMGLLAMSKGVNVF 96 (359)
T ss_dssp HHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHCCCeEE
Confidence 999999999999999876
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.9e-05 Score=73.36 Aligned_cols=89 Identities=12% Similarity=0.179 Sum_probs=62.6
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHH-cCCCCceEEEEEeecCCCC-ceeeeC-CceeE-EeecCccCC--CCCcEEEecCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRSAG-KQLSFQ-DKAYT-VEELTEDSF--DGVDIALFSAG 110 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~-~~~~p~~~l~~l~s~~s~G-~~~~~~-~~~~~-v~~~d~~~~--~~~DvVf~a~g 110 (279)
|+++||+||| .|.+|+..++.|. +. |.++++.+.+++... +..... +.... +.+++ +.+ .++|+|+.|+|
T Consensus 21 m~~~rvgiIG-~G~~g~~~~~~l~~~~--~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~-~ll~~~~~D~V~i~tp 96 (357)
T 3ec7_A 21 GMTLKAGIVG-IGMIGSDHLRRLANTV--SGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYH-DLINDKDVEVVIITAS 96 (357)
T ss_dssp -CCEEEEEEC-CSHHHHHHHHHHHHTC--TTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHH-HHHHCTTCCEEEECSC
T ss_pred CCeeeEEEEC-CcHHHHHHHHHHHhhC--CCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHH-HHhcCCCCCEEEEcCC
Confidence 3468999999 5999999999998 66 889999887764321 111110 10112 22222 112 36899999999
Q ss_pred CchhhhhHHHHHhCCCEEE
Q 023678 111 GSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VI 129 (279)
+....+++.+++++|..|+
T Consensus 97 ~~~h~~~~~~al~aGk~Vl 115 (357)
T 3ec7_A 97 NEAHADVAVAALNANKYVF 115 (357)
T ss_dssp GGGHHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHHCCCCEE
Confidence 9999999999999999876
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.1e-06 Score=76.29 Aligned_cols=89 Identities=12% Similarity=0.173 Sum_probs=62.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecCccCC--CCCcEEEecCCCc
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELTEDSF--DGVDIALFSAGGS 112 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~~~--~~~DvVf~a~g~~ 112 (279)
|+++||+||| .|.+|+.+++.|.++ +.++++++.+++... +.... .+....+.+++ +.+ .++|+|+.|+++.
T Consensus 3 m~~~~igiiG-~G~~g~~~~~~l~~~--~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~D~V~i~tp~~ 78 (330)
T 3e9m_A 3 LDKIRYGIMS-TAQIVPRFVAGLRES--AQAEVRGIASRRLENAQKMAKELAIPVAYGSYE-ELCKDETIDIIYIPTYNQ 78 (330)
T ss_dssp CCCEEEEECS-CCTTHHHHHHHHHHS--SSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHH-HHHHCTTCSEEEECCCGG
T ss_pred CCeEEEEEEC-chHHHHHHHHHHHhC--CCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHH-HHhcCCCCCEEEEcCCCH
Confidence 4568999999 599999999999887 889999887654211 11110 01110111211 112 3789999999999
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
...+++..++++|..|+
T Consensus 79 ~h~~~~~~al~~gk~vl 95 (330)
T 3e9m_A 79 GHYSAAKLALSQGKPVL 95 (330)
T ss_dssp GHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHCCCeEE
Confidence 99999999999998766
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.77 E-value=2.4e-05 Score=70.20 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=59.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
++||+|||+||.+|+.+.+.|.+++| ++..+ +++.. -..+...+ +.+.+. .+.+.++|+||+|++.....+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~---~V~~~-~r~~~~~~~~~~~g--~~~~~~-~~~~~~aDvVi~av~~~~~~~v 83 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAH---HLAAI-EIAPEGRDRLQGMG--IPLTDG-DGWIDEADVVVLALPDNIIEKV 83 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSS---EEEEE-CCSHHHHHHHHHTT--CCCCCS-SGGGGTCSEEEECSCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEE-ECCHHHHHHHHhcC--CCcCCH-HHHhcCCCEEEEcCCchHHHHH
Confidence 46999999889999999999988754 44433 33211 01111111 111111 2335689999999999887777
Q ss_pred HHHHH---hCCCEEEEcCCCC
Q 023678 118 GPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 118 ~~~~~---~aG~~VIDlS~~~ 135 (279)
+..+. ..|..|||.|...
T Consensus 84 ~~~l~~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 84 AEDIVPRVRPGTIVLILDAAA 104 (286)
T ss_dssp HHHHGGGSCTTCEEEESCSHH
T ss_pred HHHHHHhCCCCCEEEECCCCc
Confidence 76654 3688999988753
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.2e-05 Score=71.49 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=61.4
Q ss_pred CCCEEEEECcCcHHHHH-HHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC--CCCcEEEecCCCchh
Q 023678 38 SAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSAGGSIS 114 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~e-Ll~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~--~~~DvVf~a~g~~~s 114 (279)
+++||+||| +|.+|+. .++.|.++ |.++++++.+++.....-.+.+. -.+.+++ +.+ .++|+|+.|+|+...
T Consensus 6 ~~~rvgiiG-~G~~g~~~~~~~~~~~--~~~~l~av~d~~~~~~~~~~~~~-~~~~~~~-~ll~~~~vD~V~i~tp~~~H 80 (352)
T 3kux_A 6 DKIKVGLLG-YGYASKTFHAPLIMGT--PGLELAGVSSSDASKVHADWPAI-PVVSDPQ-MLFNDPSIDLIVIPTPNDTH 80 (352)
T ss_dssp CCEEEEEEC-CSHHHHHTHHHHHHTS--TTEEEEEEECSCHHHHHTTCSSC-CEESCHH-HHHHCSSCCEEEECSCTTTH
T ss_pred CCceEEEEC-CCHHHHHHHHHHHhhC--CCcEEEEEECCCHHHHHhhCCCC-ceECCHH-HHhcCCCCCEEEEeCChHHH
Confidence 358999999 6999997 78888877 89999988765421111011111 1122222 112 368999999999999
Q ss_pred hhhHHHHHhCCCEEE
Q 023678 115 KKFGPIAVEKGSIVV 129 (279)
Q Consensus 115 ~~~~~~~~~aG~~VI 129 (279)
.+++.+++++|..|+
T Consensus 81 ~~~~~~al~aGkhV~ 95 (352)
T 3kux_A 81 FPLAQSALAAGKHVV 95 (352)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCcEE
Confidence 999999999999776
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=5.7e-05 Score=68.56 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=56.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eee-e-CCceeEEeecC--ccCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLS-F-QDKAYTVEELT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~-~-~~~~~~v~~~d--~~~~~~~DvVf~a~g~ 111 (279)
++++|.|.||||++|+.|++.|.++++ +++.+. +...+. .+. . ....+.+...| ...+.++|+||.+++.
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vih~A~~ 101 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDGH---EVTVVD-NFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASP 101 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE-CCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSC
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCCC---EEEEEe-CCCccchhhhhhhccCCceEEEeCccCChhhcCCCEEEECccc
Confidence 457999999999999999999998754 555553 332221 111 0 11223443333 3446789999998874
Q ss_pred ch------------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 112 SI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 112 ~~------------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
.. +..+++.+.+.|+++|=.|+..
T Consensus 102 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~ 143 (343)
T 2b69_A 102 ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE 143 (343)
T ss_dssp CSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred cCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHH
Confidence 32 1233444555677777666543
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.75 E-value=4.8e-05 Score=69.73 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=62.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCcc----------CCCCCcEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTED----------SFDGVDIAL 106 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~----------~~~~~DvVf 106 (279)
+|+||+|||+.|++|...++.|.+. ..+++++.+++..-...........+ .+++.- .-.++|+|+
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~---~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~ 78 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDT---GNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVS 78 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHT---TCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHhC---CCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEE
Confidence 3689999998799999999999875 46888887765432211111111222 222210 124799999
Q ss_pred ecCCCchhhhhHHHHHhCCCEEE
Q 023678 107 FSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 107 ~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
.|+|+....+++.+++++|+.|+
T Consensus 79 I~tP~~~H~~~~~~al~aGkhVl 101 (318)
T 3oa2_A 79 ICSPNYLHYPHIAAGLRLGCDVI 101 (318)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEE
T ss_pred ECCCcHHHHHHHHHHHHCCCeEE
Confidence 99999999999999999999887
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.75 E-value=6.5e-06 Score=71.43 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=58.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecCccCCCCCcEEEecCCCchhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
+++||+||| +|.+|+.+.+.|.+.++ ++..+.+++..- +.+.. .+.. ....+.+.+.++|+||.|++.....
T Consensus 22 ~mmkI~IIG-~G~mG~~la~~l~~~g~---~V~~v~~r~~~~~~~l~~~~g~~--~~~~~~~~~~~aDvVilavp~~~~~ 95 (220)
T 4huj_A 22 SMTTYAIIG-AGAIGSALAERFTAAQI---PAIIANSRGPASLSSVTDRFGAS--VKAVELKDALQADVVILAVPYDSIA 95 (220)
T ss_dssp GSCCEEEEE-CHHHHHHHHHHHHHTTC---CEEEECTTCGGGGHHHHHHHTTT--EEECCHHHHTTSSEEEEESCGGGHH
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHhCCC---EEEEEECCCHHHHHHHHHHhCCC--cccChHHHHhcCCEEEEeCChHHHH
Confidence 357999999 79999999999998765 444434443211 11110 0111 1111223356899999999987666
Q ss_pred hhHHHHH-hCCCEEEEcCCCCC
Q 023678 116 KFGPIAV-EKGSIVVDNSSAFR 136 (279)
Q Consensus 116 ~~~~~~~-~aG~~VIDlS~~~R 136 (279)
+.+..+. -.|..|||.+..+-
T Consensus 96 ~v~~~l~~~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 96 DIVTQVSDWGGQIVVDASNAID 117 (220)
T ss_dssp HHHTTCSCCTTCEEEECCCCBC
T ss_pred HHHHHhhccCCCEEEEcCCCCC
Confidence 6554432 14778999998774
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.5e-05 Score=72.95 Aligned_cols=86 Identities=10% Similarity=0.142 Sum_probs=62.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCccCC--CCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSF--DGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~~--~~~DvVf~a~g~~~s~ 115 (279)
++||+||| .|.+|+.+++.|.++ |.++++.+.+++... +.+.... .+.+.+++ +.+ .++|+|+.|+|+....
T Consensus 3 ~~~vgiiG-~G~~g~~~~~~l~~~--~~~~l~av~d~~~~~~~~~~~~~-~~~~~~~~-~~l~~~~~D~V~i~tp~~~h~ 77 (331)
T 4hkt_A 3 TVRFGLLG-AGRIGKVHAKAVSGN--ADARLVAVADAFPAAAEAIAGAY-GCEVRTID-AIEAAADIDAVVICTPTDTHA 77 (331)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHC--TTEEEEEEECSSHHHHHHHHHHT-TCEECCHH-HHHHCTTCCEEEECSCGGGHH
T ss_pred ceEEEEEC-CCHHHHHHHHHHhhC--CCcEEEEEECCCHHHHHHHHHHh-CCCcCCHH-HHhcCCCCCEEEEeCCchhHH
Confidence 47999999 599999999999887 899999887654311 1111100 11232322 112 3789999999999999
Q ss_pred hhHHHHHhCCCEEE
Q 023678 116 KFGPIAVEKGSIVV 129 (279)
Q Consensus 116 ~~~~~~~~aG~~VI 129 (279)
+++..++++|..|+
T Consensus 78 ~~~~~al~~gk~v~ 91 (331)
T 4hkt_A 78 DLIERFARAGKAIF 91 (331)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCcEE
Confidence 99999999999776
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.3e-05 Score=74.14 Aligned_cols=87 Identities=9% Similarity=0.100 Sum_probs=61.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecCccCC--CCCcEEEecCCCch
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELTEDSF--DGVDIALFSAGGSI 113 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~~~--~~~DvVf~a~g~~~ 113 (279)
+++||+||| .|.+|+..++.|.++ |.++++.+.+++... +.... .+... +.+++ +.+ .++|+|+.|+|+..
T Consensus 4 ~~~~vgiiG-~G~~g~~~~~~l~~~--~~~~lvav~d~~~~~~~~~~~~~g~~~-~~~~~-~~l~~~~~D~V~i~tp~~~ 78 (354)
T 3db2_A 4 NPVGVAAIG-LGRWAYVMADAYTKS--EKLKLVTCYSRTEDKREKFGKRYNCAG-DATME-ALLAREDVEMVIITVPNDK 78 (354)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTC--SSEEEEEEECSSHHHHHHHHHHHTCCC-CSSHH-HHHHCSSCCEEEECSCTTS
T ss_pred CcceEEEEc-cCHHHHHHHHHHHhC--CCcEEEEEECCCHHHHHHHHHHcCCCC-cCCHH-HHhcCCCCCEEEEeCChHH
Confidence 458999999 599999999999877 899999887654211 11110 01111 11211 112 46899999999999
Q ss_pred hhhhHHHHHhCCCEEE
Q 023678 114 SKKFGPIAVEKGSIVV 129 (279)
Q Consensus 114 s~~~~~~~~~aG~~VI 129 (279)
..+++.+++++|..|+
T Consensus 79 h~~~~~~al~~gk~vl 94 (354)
T 3db2_A 79 HAEVIEQCARSGKHIY 94 (354)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCEEE
Confidence 9999999999999776
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=2.4e-05 Score=74.76 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=61.7
Q ss_pred CCCCEEEEECcCcHHHH-HHHHHHHcCCCCceEEEEEeecCCC-Cceee--eCCce--eEE-eecCccCC--CCCcEEEe
Q 023678 37 ESAPSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSA-GKQLS--FQDKA--YTV-EELTEDSF--DGVDIALF 107 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~-eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~--~~~~~--~~v-~~~d~~~~--~~~DvVf~ 107 (279)
|+++||+|||+ |.+|+ .+++.|.++ +.++++.+.+++.. .+.+. ++... ..+ .+++ +.+ .++|+|+.
T Consensus 81 ~~~irigiIG~-G~~g~~~~~~~l~~~--~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~-~ll~~~~vD~V~i 156 (433)
T 1h6d_A 81 DRRFGYAIVGL-GKYALNQILPGFAGC--QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFD-KIAKDPKIDAVYI 156 (433)
T ss_dssp CCCEEEEEECC-SHHHHHTHHHHTTTC--SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGG-GGGGCTTCCEEEE
T ss_pred CCceEEEEECC-cHHHHHHHHHHHhhC--CCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHH-HHhcCCCCCEEEE
Confidence 45689999995 99997 899988776 88999888765421 11111 11110 111 1221 222 36899999
Q ss_pred cCCCchhhhhHHHHHhCCCEEE
Q 023678 108 SAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 108 a~g~~~s~~~~~~~~~aG~~VI 129 (279)
|+++....+++..++++|..|+
T Consensus 157 atp~~~h~~~~~~al~aGk~Vl 178 (433)
T 1h6d_A 157 ILPNSLHAEFAIRAFKAGKHVM 178 (433)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEE
T ss_pred cCCchhHHHHHHHHHHCCCcEE
Confidence 9999999999999999999776
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.70 E-value=6.7e-05 Score=68.77 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=56.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee-eCCceeEEeecC-c-c----CCCCCcEEEecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS-FQDKAYTVEELT-E-D----SFDGVDIALFSA 109 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~-~~~~~~~v~~~d-~-~----~~~~~DvVf~a~ 109 (279)
++++|.|.||||++|+.|++.|.++ +..+++.+. |+... ..+. ..+......|+. . + .+.++|+||.++
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~--~g~~V~~~~-r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A 99 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILET--TDWEVFGMD-MQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLV 99 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHH--SSCEEEEEE-SCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECB
T ss_pred CCCEEEEECCCChHHHHHHHHHHhC--CCCEEEEEe-CChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcC
Confidence 4579999999999999999999886 344666664 33211 1111 111122222432 1 1 235799999987
Q ss_pred CCch------------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 110 GGSI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 110 g~~~------------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
+... +..+++.+.+.|.++|=.|+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~ 143 (372)
T 3slg_A 100 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSE 143 (372)
T ss_dssp CCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGG
T ss_pred ccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHH
Confidence 6432 1334555556677777777753
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=2.2e-05 Score=73.98 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=58.2
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecCCCC-ceeee-CCceeEEeecCccCCCCCcEEEecC
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAG-KQLSF-QDKAYTVEELTEDSFDGVDIALFSA 109 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~~~~~~DvVf~a~ 109 (279)
|....+++||+|+| +|+ |+.-++.+.+. | .++++.+.++...- +.+.. .+.. .+.+++ +.++++|+|+.|+
T Consensus 1 M~~~~~~~rv~VvG-~G~-g~~h~~a~~~~--~~~~elvav~~~~~~~a~~~a~~~gv~-~~~~~~-~l~~~~D~v~i~~ 74 (372)
T 4gmf_A 1 MPSASPKQRVLIVG-AKF-GEMYLNAFMQP--PEGLELVGLLAQGSARSRELAHAFGIP-LYTSPE-QITGMPDIACIVV 74 (372)
T ss_dssp ------CEEEEEEC-STT-THHHHHTTSSC--CTTEEEEEEECCSSHHHHHHHHHTTCC-EESSGG-GCCSCCSEEEECC
T ss_pred CCCCCCCCEEEEEe-hHH-HHHHHHHHHhC--CCCeEEEEEECCCHHHHHHHHHHhCCC-EECCHH-HHhcCCCEEEEEC
Confidence 44445578999999 686 99888887665 5 59999998764321 11111 1111 122332 2346799999999
Q ss_pred CCchh----hhhHHHHHhCCCEEEE
Q 023678 110 GGSIS----KKFGPIAVEKGSIVVD 130 (279)
Q Consensus 110 g~~~s----~~~~~~~~~aG~~VID 130 (279)
++... .+++.+++++|+-|+-
T Consensus 75 p~~~h~~~~~~~a~~al~aGkhVl~ 99 (372)
T 4gmf_A 75 RSTVAGGAGTQLARHFLARGVHVIQ 99 (372)
T ss_dssp C--CTTSHHHHHHHHHHHTTCEEEE
T ss_pred CCcccchhHHHHHHHHHHcCCcEEE
Confidence 98765 7889999999998773
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.69 E-value=7.9e-06 Score=75.39 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=60.8
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCC-------ceEEEEEeecCCCC-ceeee-CCceeEEeecCccCC--CCCcE
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFP-------YRSIKMLASKRSAG-KQLSF-QDKAYTVEELTEDSF--DGVDI 104 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p-------~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~~~--~~~Dv 104 (279)
.|+++|||||| +|.+|+.-++.+.+. | ..+++++.+++..- +.... .+..-.+.+++ +.+ .++|+
T Consensus 3 ~M~klrvgiIG-~G~ig~~h~~~~~~~--~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~-~ll~~~~iDa 78 (390)
T 4h3v_A 3 AMTNLGIGLIG-YAFMGAAHSQAWRSA--PRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWR-TLLERDDVQL 78 (390)
T ss_dssp -CCEEEEEEEC-HHHHHHHHHHHHHHH--HHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHH-HHTTCTTCSE
T ss_pred CCCcCcEEEEc-CCHHHHHHHHHHHhC--ccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHH-HHhcCCCCCE
Confidence 46678999999 699999888877654 4 34888887654211 11110 01111222222 112 36899
Q ss_pred EEecCCCchhhhhHHHHHhCCCEEE
Q 023678 105 ALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 105 Vf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
|+.|+|+....+++.+++++|..|+
T Consensus 79 V~I~tP~~~H~~~~~~al~aGkhVl 103 (390)
T 4h3v_A 79 VDVCTPGDSHAEIAIAALEAGKHVL 103 (390)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred EEEeCChHHHHHHHHHHHHcCCCce
Confidence 9999999999999999999999877
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=97.68 E-value=3.6e-05 Score=68.90 Aligned_cols=94 Identities=11% Similarity=0.087 Sum_probs=58.6
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEE-eecCccCCCCCcEEEecCCCchh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTV-EELTEDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s 114 (279)
|+++||+||| .|.+|+.+.+.|.++++ ..++... +++.. -..+...+..... .++ .+.+.++|+||+|++....
T Consensus 4 M~~~~I~iIG-~G~mG~~~a~~l~~~g~-~~~V~~~-d~~~~~~~~~~~~g~~~~~~~~~-~~~~~~aDvVilavp~~~~ 79 (290)
T 3b1f_A 4 MEEKTIYIAG-LGLIGASLALGIKRDHP-HYKIVGY-NRSDRSRDIALERGIVDEATADF-KVFAALADVIILAVPIKKT 79 (290)
T ss_dssp GCCCEEEEEC-CSHHHHHHHHHHHHHCT-TSEEEEE-CSSHHHHHHHHHTTSCSEEESCT-TTTGGGCSEEEECSCHHHH
T ss_pred cccceEEEEe-eCHHHHHHHHHHHhCCC-CcEEEEE-cCCHHHHHHHHHcCCcccccCCH-HHhhcCCCEEEEcCCHHHH
Confidence 4467999999 79999999999987642 3454443 33211 0011111111011 122 2235689999999999888
Q ss_pred hhhHHHHHh----CCCEEEEcCCC
Q 023678 115 KKFGPIAVE----KGSIVVDNSSA 134 (279)
Q Consensus 115 ~~~~~~~~~----aG~~VIDlS~~ 134 (279)
.+.+..+.. .|..|||.++.
T Consensus 80 ~~v~~~l~~~~l~~~~ivi~~~~~ 103 (290)
T 3b1f_A 80 IDFIKILADLDLKEDVIITDAGST 103 (290)
T ss_dssp HHHHHHHHTSCCCTTCEEECCCSC
T ss_pred HHHHHHHHhcCCCCCCEEEECCCC
Confidence 777776643 47889998763
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.68 E-value=2.6e-05 Score=70.93 Aligned_cols=86 Identities=16% Similarity=0.285 Sum_probs=61.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCC--CCCcEEEecCCCchh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSF--DGVDIALFSAGGSIS 114 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~--~~~DvVf~a~g~~~s 114 (279)
+++||+|||+ |.+|+.+++.|.++ +.++++.+.+++.. +.-.+... +.+. +++ +.+ .++|+|+.|+++...
T Consensus 9 ~~~~igiIG~-G~~g~~~~~~l~~~--~~~~~v~v~d~~~~-~~~~~~~~-~~~~~~~~-~~l~~~~~D~V~i~tp~~~h 82 (315)
T 3c1a_A 9 SPVRLALIGA-GRWGKNYIRTIAGL--PGAALVRLASSNPD-NLALVPPG-CVIESDWR-SVVSAPEVEAVIIATPPATH 82 (315)
T ss_dssp CCEEEEEEEC-TTTTTTHHHHHHHC--TTEEEEEEEESCHH-HHTTCCTT-CEEESSTH-HHHTCTTCCEEEEESCGGGH
T ss_pred CcceEEEECC-cHHHHHHHHHHHhC--CCcEEEEEEeCCHH-HHHHHHhh-CcccCCHH-HHhhCCCCCEEEEeCChHHH
Confidence 3589999995 99999999999887 78898888765321 10011111 2222 221 122 378999999999999
Q ss_pred hhhHHHHHhCCCEEE
Q 023678 115 KKFGPIAVEKGSIVV 129 (279)
Q Consensus 115 ~~~~~~~~~aG~~VI 129 (279)
.+++.+++++|..|+
T Consensus 83 ~~~~~~al~~Gk~v~ 97 (315)
T 3c1a_A 83 AEITLAAIASGKAVL 97 (315)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCcEE
Confidence 999999999999765
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.66 E-value=1.7e-05 Score=73.55 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=62.0
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee-CCc--eeEE-eecCccCC--CCCcEEEecC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-QDK--AYTV-EELTEDSF--DGVDIALFSA 109 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~-~~~--~~~v-~~~d~~~~--~~~DvVf~a~ 109 (279)
++++||+|||+ |.+|+.+++.|.++ |.++++.+.+++.. .+.+.. .+. ...+ .+++ +.+ .++|+|+.|+
T Consensus 4 ~~~~~vgiiG~-G~ig~~~~~~l~~~--~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~-~ll~~~~~D~V~i~t 79 (362)
T 1ydw_A 4 ETQIRIGVMGC-ADIARKVSRAIHLA--PNATISGVASRSLEKAKAFATANNYPESTKIHGSYE-SLLEDPEIDALYVPL 79 (362)
T ss_dssp --CEEEEEESC-CTTHHHHHHHHHHC--TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHH-HHHHCTTCCEEEECC
T ss_pred CCceEEEEECc-hHHHHHHHHHHhhC--CCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHH-HHhcCCCCCEEEEcC
Confidence 44689999995 99999999999887 88999888765421 111110 010 1122 2221 112 3689999999
Q ss_pred CCchhhhhHHHHHhCCCEEEE
Q 023678 110 GGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VID 130 (279)
|+....+++.+++++|..|+-
T Consensus 80 p~~~h~~~~~~al~aGk~V~~ 100 (362)
T 1ydw_A 80 PTSLHVEWAIKAAEKGKHILL 100 (362)
T ss_dssp CGGGHHHHHHHHHTTTCEEEE
T ss_pred ChHHHHHHHHHHHHCCCeEEE
Confidence 999999999999999998773
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00013 Score=65.60 Aligned_cols=93 Identities=20% Similarity=0.346 Sum_probs=51.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecC-c----cCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-E----DSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g~~ 112 (279)
+|+|.|.||||++|+.|++.|.++++ +++.+. |+... ..+...+......|+. . ..+.++|+||.+++..
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~-r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~~ 88 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGH---DLVLIH-RPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGYY 88 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEE-CTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC----
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEe-cChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCccC
Confidence 46999999999999999999998754 555553 33221 1111111112222332 1 2256899999998742
Q ss_pred h----------------hhhhHHHHHhCCC-EEEEcCCCC
Q 023678 113 I----------------SKKFGPIAVEKGS-IVVDNSSAF 135 (279)
Q Consensus 113 ~----------------s~~~~~~~~~aG~-~VIDlS~~~ 135 (279)
. +..+++.+.+.|+ ++|=.|+..
T Consensus 89 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~ 128 (342)
T 2x4g_A 89 PSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAY 128 (342)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGG
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHH
Confidence 1 1234444555664 566566643
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00017 Score=64.42 Aligned_cols=91 Identities=21% Similarity=0.282 Sum_probs=55.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc----cCCCCCcEEEecCCCch-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE----DSFDGVDIALFSAGGSI- 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~----~~~~~~DvVf~a~g~~~- 113 (279)
+++|.|.||||++|+.|++.|.++++ +++.+ +|+ .+..- ..+......|+.. +.+.++|+||.+++...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~-~r~-~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~~~~ 75 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN---TPIIL-TRS-IGNKA-INDYEYRVSDYTLEDLINQLNDVDAVVHLAATRGS 75 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE-ESC-CC------CCEEEECCCCHHHHHHHTTTCSEEEECCCCCCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC---EEEEE-eCC-CCccc-CCceEEEEccccHHHHHHhhcCCCEEEEccccCCC
Confidence 36899999999999999999998854 55555 343 22211 1121222223331 23568999999977531
Q ss_pred -------------hhhhHHHHHhCCCE-EEEcCCCC
Q 023678 114 -------------SKKFGPIAVEKGSI-VVDNSSAF 135 (279)
Q Consensus 114 -------------s~~~~~~~~~aG~~-VIDlS~~~ 135 (279)
+..+++.+.+.|++ +|=.|+..
T Consensus 76 ~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~ 111 (311)
T 3m2p_A 76 QGKISEFHDNEILTQNLYDACYENNISNIVYASTIS 111 (311)
T ss_dssp SSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred CChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHH
Confidence 24556666778875 66566543
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00034 Score=63.96 Aligned_cols=97 Identities=19% Similarity=0.085 Sum_probs=57.7
Q ss_pred cCCCCCEEEEECcCcHHHHHHHHHHHc--CCCCceEEEEEeecCCC------------CceeeeCCceeEE--eecC-cc
Q 023678 35 YQESAPSVAVVGVTGAVGQEFLSVLSD--RDFPYRSIKMLASKRSA------------GKQLSFQDKAYTV--EELT-ED 97 (279)
Q Consensus 35 ~~~~~~kVaIiGATG~VG~eLl~lL~~--~~~p~~~l~~l~s~~s~------------G~~~~~~~~~~~v--~~~d-~~ 97 (279)
+.+++++|.|.||||++|+.|++.|.+ +++ +++.+. |... +.........+.+ .|+. .+
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~---~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 81 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKA---KVVVLD-KFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPL 81 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTS---EEEEEE-CCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHH
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCC---eEEEEE-CCCccccccccchhhhhhhhhccccCceEEECCCCCHH
Confidence 345578999999999999999999988 543 555553 3221 1111111111222 2332 11
Q ss_pred ----C-CCCCcEEEecCCCch----------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 98 ----S-FDGVDIALFSAGGSI----------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 98 ----~-~~~~DvVf~a~g~~~----------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
. ..++|+||.|++... +..++..+.+.|+++|=.|+..
T Consensus 82 ~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~ 140 (362)
T 3sxp_A 82 DLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAG 140 (362)
T ss_dssp HHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred HHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHH
Confidence 1 468999999987422 1234455567788877677643
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.65 E-value=2.2e-05 Score=72.23 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=61.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecCccCC--CCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELTEDSF--DGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~~~--~~~DvVf~a~g~~~s 114 (279)
++||+||| .|.+|+.+++.|.++ |.++++.+.++.... +.... .+....+.+++ +.+ .++|+|+.|+|+...
T Consensus 2 ~~rvgiIG-~G~~g~~~~~~l~~~--~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~D~V~i~tp~~~h 77 (344)
T 3ezy_A 2 SLRIGVIG-LGRIGTIHAENLKMI--DDAILYAISDVREDRLREMKEKLGVEKAYKDPH-ELIEDPNVDAVLVCSSTNTH 77 (344)
T ss_dssp CEEEEEEC-CSHHHHHHHHHGGGS--TTEEEEEEECSCHHHHHHHHHHHTCSEEESSHH-HHHHCTTCCEEEECSCGGGH
T ss_pred eeEEEEEc-CCHHHHHHHHHHHhC--CCcEEEEEECCCHHHHHHHHHHhCCCceeCCHH-HHhcCCCCCEEEEcCCCcch
Confidence 47999999 599999999999886 899999887654211 11110 01111222222 112 378999999999999
Q ss_pred hhhHHHHHhCCCEEE
Q 023678 115 KKFGPIAVEKGSIVV 129 (279)
Q Consensus 115 ~~~~~~~~~aG~~VI 129 (279)
.+++..++++|..|+
T Consensus 78 ~~~~~~al~~gk~v~ 92 (344)
T 3ezy_A 78 SELVIACAKAKKHVF 92 (344)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhcCCeEE
Confidence 999999999999776
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=6.8e-05 Score=67.32 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=54.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--e---eeCCceeEEeecC-cc----CCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--L---SFQDKAYTVEELT-ED----SFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~---~~~~~~~~v~~~d-~~----~~~~~DvVf~a 108 (279)
+++|.|.||||++|+.+++.|.++++ +++++ +|+...+. + ...+..+...|++ .+ .+.++|+||.+
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~l-~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~ 86 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGH---PTYVF-TRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISA 86 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTC---CEEEE-ECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCC---cEEEE-ECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence 35899999999999999999998865 34445 34332211 1 1112222223433 11 24689999999
Q ss_pred CCC---chhhhhHHHHHhCC-C-EEE
Q 023678 109 AGG---SISKKFGPIAVEKG-S-IVV 129 (279)
Q Consensus 109 ~g~---~~s~~~~~~~~~aG-~-~VI 129 (279)
++. ...+.+++.+.++| + ++|
T Consensus 87 a~~~~~~~~~~l~~aa~~~g~v~~~v 112 (318)
T 2r6j_A 87 LAFPQILDQFKILEAIKVAGNIKRFL 112 (318)
T ss_dssp CCGGGSTTHHHHHHHHHHHCCCCEEE
T ss_pred CchhhhHHHHHHHHHHHhcCCCCEEE
Confidence 874 34566667777777 6 455
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=9.5e-05 Score=62.96 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=55.2
Q ss_pred CEEEEECcCcHHHHHHHHHHH-cCCCCceEEEEEeecCCC--CceeeeCCceeEEe--ecC-cc----CCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRSA--GKQLSFQDKAYTVE--ELT-ED----SFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~-~~~~p~~~l~~l~s~~s~--G~~~~~~~~~~~v~--~~d-~~----~~~~~DvVf~a~ 109 (279)
.+|.|.||||.+|+.+++.|. +.++ +++++. |+.. -..+......+.+. |+. .+ .+.++|+||.++
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~---~V~~~~-r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~a 81 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDM---HITLYG-RQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGA 81 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCC---EEEEEE-SSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCc---eEEEEe-cCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcC
Confidence 359999999999999999998 6643 555553 3321 11110011222332 332 11 246899999998
Q ss_pred CCc--hhhhhHHHHHhCCC-EEEEcCCC
Q 023678 110 GGS--ISKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 110 g~~--~s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
+.. ..+.+++.+.+.|. ++|-.|+.
T Consensus 82 g~~n~~~~~~~~~~~~~~~~~iv~iSs~ 109 (221)
T 3r6d_A 82 MESGSDMASIVKALSRXNIRRVIGVSMA 109 (221)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred CCCChhHHHHHHHHHhcCCCeEEEEeec
Confidence 852 15566666777776 56656654
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=5.2e-05 Score=67.56 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=42.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
|||.|.|||||+|+.|++.|.++|| +++.+ +|+..-. .+...+++...+.++|.|+-+.+.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~---~V~~l-~R~~~~~-------~~~~~~~~~~~l~~~d~vihla~~ 61 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH---EVTLV-SRKPGPG-------RITWDELAASGLPSCDAAVNLAGE 61 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEE-ESSCCTT-------EEEHHHHHHHCCCSCSEEEECCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEE-ECCCCcC-------eeecchhhHhhccCCCEEEEeccC
Confidence 7899999999999999999999876 45555 4432111 112223334557789999987763
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=6.5e-05 Score=71.82 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=62.9
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee-----eCCceeEEee---cCc-cCC--CCCcE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS-----FQDKAYTVEE---LTE-DSF--DGVDI 104 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~-----~~~~~~~v~~---~d~-~~~--~~~Dv 104 (279)
|+++||+||| +|.+|+..++.|.++ |.++++++.+++..- +... ++.....+.. .+. +.+ .++|+
T Consensus 18 ~~~~rvgiIG-~G~~g~~h~~~l~~~--~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~ 94 (444)
T 2ixa_A 18 PKKVRIAFIA-VGLRGQTHVENMARR--DDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDA 94 (444)
T ss_dssp -CCEEEEEEC-CSHHHHHHHHHHHTC--TTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCE
T ss_pred CCCceEEEEe-cCHHHHHHHHHHHhC--CCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCE
Confidence 4568999999 799999999999877 899999988754211 1110 0111122221 021 123 36899
Q ss_pred EEecCCCchhhhhHHHHHhCCCEEE
Q 023678 105 ALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 105 Vf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
|+.|+++....+++.+++++|+.|+
T Consensus 95 V~i~tp~~~h~~~~~~al~aGkhV~ 119 (444)
T 2ixa_A 95 VFVSSPWEWHHEHGVAAMKAGKIVG 119 (444)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEE
T ss_pred EEEcCCcHHHHHHHHHHHHCCCeEE
Confidence 9999999999999999999999776
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=7.7e-05 Score=69.14 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=60.2
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCC-------ceEEEEEeecCCCCceee-eC---------CceeE-Ee--ecCc
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFP-------YRSIKMLASKRSAGKQLS-FQ---------DKAYT-VE--ELTE 96 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p-------~~~l~~l~s~~s~G~~~~-~~---------~~~~~-v~--~~d~ 96 (279)
|+++||+|+| .|.||+.+++.|.++ + .++++.+++++.. +.-. +. ...+. +. ..+.
T Consensus 4 M~~irvgIiG-~G~VG~~~~~~l~~~--~~~~~~g~~~~vvaV~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (331)
T 3c8m_A 4 MKTINLSIFG-LGNVGLNLLRIIRSF--NEENRLGLKFNVVFVADSLHS-YYNERIDIGKVISYKEKGSLDSLEYESISA 79 (331)
T ss_dssp CEEEEEEEEC-CSHHHHHHHHHHHHH--HHHCSSSEEEEEEEEECSSCE-EECTTCCHHHHHHHHHTTCGGGCCSEECCH
T ss_pred CcEEeEEEEe-cCHHHHHHHHHHHhC--hHHHhcCCcEEEEEEEECChH-HhhcccChHHHhhhhccCCcccccCCCCCH
Confidence 4468999999 799999999999775 4 5788888765421 1000 00 00000 10 0121
Q ss_pred cC--CCCCcEEEecCCCc----hhhhhHHHHHhCCCEEEE
Q 023678 97 DS--FDGVDIALFSAGGS----ISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 97 ~~--~~~~DvVf~a~g~~----~s~~~~~~~~~aG~~VID 130 (279)
++ -.++|+|+.|+|+. .+.+++.+++++|+.||-
T Consensus 80 ~~ll~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvt 119 (331)
T 3c8m_A 80 SEALARDFDIVVDATPASADGKKELAFYKETFENGKDVVT 119 (331)
T ss_dssp HHHHHSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEe
Confidence 11 13689999999995 778899999999999985
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.5e-05 Score=70.88 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=61.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHH-cCCCCceEEEEEeecCCCC-ceeee-CCceeE-EeecCccCC--CCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRSAG-KQLSF-QDKAYT-VEELTEDSF--DGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~-~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~-v~~~d~~~~--~~~DvVf~a~g~~ 112 (279)
++||+||| .|.+|+..++.|. ++ |.++++.+.+++..- +.... .+.... +.+++ +.+ .++|+|+.|+++.
T Consensus 2 ~~rigiIG-~G~~g~~~~~~l~~~~--~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~-~ll~~~~~D~V~i~tp~~ 77 (344)
T 3mz0_A 2 SLRIGVIG-TGAIGKEHINRITNKL--SGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDD-SLLADENVDAVLVTSWGP 77 (344)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHTC--SSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHH-HHHHCTTCCEEEECSCGG
T ss_pred eEEEEEEC-ccHHHHHHHHHHHhhC--CCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHH-HHhcCCCCCEEEECCCch
Confidence 47999999 5999999999998 66 889999887654211 11111 110112 22222 112 3689999999999
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
...+++.+++++|..|+
T Consensus 78 ~h~~~~~~al~~Gk~vl 94 (344)
T 3mz0_A 78 AHESSVLKAIKAQKYVF 94 (344)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHCCCcEE
Confidence 99999999999999776
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=2.1e-05 Score=67.04 Aligned_cols=92 Identities=21% Similarity=0.187 Sum_probs=58.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC-C-----ceeEEeecCccCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-D-----KAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~-~-----~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
|||+|+||+|.+|+.+.+.|.++++ ++..+ +|+.. -+.+... + .++...++ .+.+.++|+||.|++..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~---~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~Vi~~~~~~ 75 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH---EIVVG-SRREEKAEAKAAEYRRIAGDASITGMKN-EDAAEACDIAVLTIPWE 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC---EEEEE-ESSHHHHHHHHHHHHHHHSSCCEEEEEH-HHHHHHCSEEEECSCHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHHHhccccccCCCChhhH-HHHHhcCCEEEEeCChh
Confidence 5899999999999999999998754 45444 33211 0111100 0 11222221 12345789999999987
Q ss_pred hhhhhHHHHHh--CCCEEEEcCCCCC
Q 023678 113 ISKKFGPIAVE--KGSIVVDNSSAFR 136 (279)
Q Consensus 113 ~s~~~~~~~~~--aG~~VIDlS~~~R 136 (279)
..++....+.+ .|..|||+++.+.
T Consensus 76 ~~~~~~~~l~~~~~~~~vi~~~~g~~ 101 (212)
T 1jay_A 76 HAIDTARDLKNILREKIVVSPLVPVS 101 (212)
T ss_dssp HHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred hHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 76666554322 5899999998765
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00033 Score=57.21 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=56.7
Q ss_pred CCEEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccC-CCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~-~~~~DvVf~a~g~~~s 114 (279)
..+|||||++ |..|..+++.|.+.+|. +..+ .++..|..+ .+ ..+.+ +..+ ...+|+|+.|++....
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~---v~~v-np~~~g~~i--~G--~~~~~-sl~el~~~~Dlvii~vp~~~v 83 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYH---VIPV-SPKVAGKTL--LG--QQGYA-TLADVPEKVDMVDVFRNSEAA 83 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCC---EEEE-CSSSTTSEE--TT--EECCS-STTTCSSCCSEEECCSCSTHH
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCE---EEEe-CCccccccc--CC--eeccC-CHHHcCCCCCEEEEEeCHHHH
Confidence 3579999998 89999999999888763 4444 344434433 12 22221 1222 2478999999999988
Q ss_pred hhhHHHHHhCCCE--EEE
Q 023678 115 KKFGPIAVEKGSI--VVD 130 (279)
Q Consensus 115 ~~~~~~~~~aG~~--VID 130 (279)
.+.+..+.++|++ |++
T Consensus 84 ~~v~~~~~~~g~~~i~i~ 101 (145)
T 2duw_A 84 WGVAQEAIAIGAKTLWLQ 101 (145)
T ss_dssp HHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 9988888887763 554
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.56 E-value=8.3e-05 Score=67.32 Aligned_cols=95 Identities=15% Similarity=0.074 Sum_probs=55.0
Q ss_pred ccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCccCCCCCcEEEecCCCc
Q 023678 34 SYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 34 ~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
+...+++||+||| .|++|..+.+.|.+.+| ++..+ +++.. -+.+...+......++ .+.+.++|+||.|++..
T Consensus 2 ~~~~~~~~I~iIG-~G~mG~~~a~~l~~~G~---~V~~~-dr~~~~~~~~~~~g~~~~~~~~-~e~~~~aDvvi~~vp~~ 75 (303)
T 3g0o_A 2 SLTGTDFHVGIVG-LGSMGMGAARSCLRAGL---STWGA-DLNPQACANLLAEGACGAAASA-REFAGVVDALVILVVNA 75 (303)
T ss_dssp -----CCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHTTCSEEESSS-TTTTTTCSEEEECCSSH
T ss_pred CCCCCCCeEEEEC-CCHHHHHHHHHHHHCCC---eEEEE-ECCHHHHHHHHHcCCccccCCH-HHHHhcCCEEEEECCCH
Confidence 3334467999999 79999999999998865 44444 33211 0111111111101121 23457899999999986
Q ss_pred hh-hhhH---H---HHHhCCCEEEEcCCC
Q 023678 113 IS-KKFG---P---IAVEKGSIVVDNSSA 134 (279)
Q Consensus 113 ~s-~~~~---~---~~~~aG~~VIDlS~~ 134 (279)
.. ++.. . ..+..|..|||.|+.
T Consensus 76 ~~~~~v~~~~~~l~~~l~~g~ivv~~st~ 104 (303)
T 3g0o_A 76 AQVRQVLFGEDGVAHLMKPGSAVMVSSTI 104 (303)
T ss_dssp HHHHHHHC--CCCGGGSCTTCEEEECSCC
T ss_pred HHHHHHHhChhhHHhhCCCCCEEEecCCC
Confidence 33 3322 1 234578899999875
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00018 Score=65.16 Aligned_cols=93 Identities=20% Similarity=0.176 Sum_probs=55.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--eee---CC-----ceeEEe--ecC-c----cCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LSF---QD-----KAYTVE--ELT-E----DSFD 100 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~~---~~-----~~~~v~--~~d-~----~~~~ 100 (279)
++++|.|.||||++|+.|++.|.++++ +++.+. |+..+.. +.. .. ..+.+. |+. . ..+.
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 99 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQ---VVIGLD-NFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK 99 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE-CCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCC---EEEEEe-CCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc
Confidence 467999999999999999999998754 555553 3332211 000 00 122222 332 1 1256
Q ss_pred CCcEEEecCCCch------------------hhhhHHHHHhCCC-EEEEcCCC
Q 023678 101 GVDIALFSAGGSI------------------SKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 101 ~~DvVf~a~g~~~------------------s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
++|+||.|++... +..+++.+.+.|+ ++|=.|+.
T Consensus 100 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~ 152 (351)
T 3ruf_A 100 GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASS 152 (351)
T ss_dssp TCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred CCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecH
Confidence 8999999987421 1234556667786 56655554
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00039 Score=59.58 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=55.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEE--eecC-c----cCCCCCcEEEec
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTV--EELT-E----DSFDGVDIALFS 108 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v--~~~d-~----~~~~~~DvVf~a 108 (279)
|+.++|.|.||||++|+.+++.|.++++. .+++.+ +|+... ..... ..+.+ .|+. . ..+.++|+||.|
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~-~~V~~~-~r~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ 91 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLF-SKVTLI-GRRKLTFDEEAY--KNVNQEVVDFEKLDDYASAFQGHDVGFCC 91 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCC-SEEEEE-ESSCCCCCSGGG--GGCEEEECCGGGGGGGGGGGSSCSEEEEC
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCC-CEEEEE-EcCCCCcccccc--CCceEEecCcCCHHHHHHHhcCCCEEEEC
Confidence 34578999999999999999999987431 155555 343221 11111 11222 2322 1 224689999999
Q ss_pred CCCchh---------------hhhHHHHHhCCC-EEEEcCCCC
Q 023678 109 AGGSIS---------------KKFGPIAVEKGS-IVVDNSSAF 135 (279)
Q Consensus 109 ~g~~~s---------------~~~~~~~~~aG~-~VIDlS~~~ 135 (279)
++.... ..+++.+.+.|. ++|=.|+..
T Consensus 92 ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~ 134 (242)
T 2bka_A 92 LGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG 134 (242)
T ss_dssp CCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCc
Confidence 986432 233344455665 566566643
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=3.7e-05 Score=71.03 Aligned_cols=88 Identities=17% Similarity=0.198 Sum_probs=61.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEE-eecCccCC--CCCcEEEecCCCch
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTV-EELTEDSF--DGVDIALFSAGGSI 113 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v-~~~d~~~~--~~~DvVf~a~g~~~ 113 (279)
+++||+||| .|.+|+..++.|.++. |.++++++.+++... +..... ..+.+ .+++ +.+ .++|+|+.|+++..
T Consensus 12 ~~~rvgiiG-~G~~g~~~~~~l~~~~-~~~~lvav~d~~~~~~~~~~~~-~~~~~~~~~~-~ll~~~~~D~V~i~tp~~~ 87 (354)
T 3q2i_A 12 RKIRFALVG-CGRIANNHFGALEKHA-DRAELIDVCDIDPAALKAAVER-TGARGHASLT-DMLAQTDADIVILTTPSGL 87 (354)
T ss_dssp SCEEEEEEC-CSTTHHHHHHHHHHTT-TTEEEEEEECSSHHHHHHHHHH-HCCEEESCHH-HHHHHCCCSEEEECSCGGG
T ss_pred CcceEEEEc-CcHHHHHHHHHHHhCC-CCeEEEEEEcCCHHHHHHHHHH-cCCceeCCHH-HHhcCCCCCEEEECCCcHH
Confidence 468999999 5999999999887652 688998887654211 111100 01222 2221 112 37999999999999
Q ss_pred hhhhHHHHHhCCCEEE
Q 023678 114 SKKFGPIAVEKGSIVV 129 (279)
Q Consensus 114 s~~~~~~~~~aG~~VI 129 (279)
..+++.+++++|..|+
T Consensus 88 h~~~~~~al~~gk~v~ 103 (354)
T 3q2i_A 88 HPTQSIECSEAGFHVM 103 (354)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCCEE
Confidence 9999999999999877
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00019 Score=64.96 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=55.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--eee--CCceeEEe--ecC-cc----CCC--CCc
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LSF--QDKAYTVE--ELT-ED----SFD--GVD 103 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~~--~~~~~~v~--~~d-~~----~~~--~~D 103 (279)
+++++|.|.||||++|+.|++.|.+++ +.++++.+......... +.. ....+.+. |+. .+ .+. ++|
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 100 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSY-ETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQ 100 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHC-TTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhC-CCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence 346799999999999999999998875 34566555322212111 110 01123333 332 11 123 399
Q ss_pred EEEecCCCch------------------hhhhHHHHHhCCCE-EEEcCCC
Q 023678 104 IALFSAGGSI------------------SKKFGPIAVEKGSI-VVDNSSA 134 (279)
Q Consensus 104 vVf~a~g~~~------------------s~~~~~~~~~aG~~-VIDlS~~ 134 (279)
+||.+++... +..+++.+.+.|++ +|=.|+.
T Consensus 101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~ 150 (346)
T 4egb_A 101 VIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTD 150 (346)
T ss_dssp EEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEG
T ss_pred EEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCch
Confidence 9999976431 24455666677774 6655553
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.51 E-value=3.3e-05 Score=72.81 Aligned_cols=92 Identities=15% Similarity=0.200 Sum_probs=60.6
Q ss_pred ecccCCCCCEEEEECcCcHHHHHHHHHHHcCC------CCceEEEEEeecCCCC-ceee--eCCceeEEeecCccCC--C
Q 023678 32 RMSYQESAPSVAVVGVTGAVGQEFLSVLSDRD------FPYRSIKMLASKRSAG-KQLS--FQDKAYTVEELTEDSF--D 100 (279)
Q Consensus 32 ~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~------~p~~~l~~l~s~~s~G-~~~~--~~~~~~~v~~~d~~~~--~ 100 (279)
+||++ +|||||| +|++|+..++.|.+.+ .+.++++++++++..- +... ++. .-.+.+++ +.+ .
T Consensus 22 ~Ms~k---lrvgiIG-~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~-~~~y~d~~-~ll~~~ 95 (412)
T 4gqa_A 22 SMSAR---LNIGLIG-SGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGA-EKAYGDWR-ELVNDP 95 (412)
T ss_dssp ---CE---EEEEEEC-CSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTC-SEEESSHH-HHHHCT
T ss_pred ccccc---ceEEEEc-CcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCC-CeEECCHH-HHhcCC
Confidence 45554 9999999 6999998888876531 1367899887654211 1111 111 11222322 112 4
Q ss_pred CCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 101 GVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 101 ~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
++|+|+.|+|+....+++.+++++|..|+
T Consensus 96 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl 124 (412)
T 4gqa_A 96 QVDVVDITSPNHLHYTMAMAAIAAGKHVY 124 (412)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred CCCEEEECCCcHHHHHHHHHHHHcCCCeE
Confidence 68999999999999999999999999876
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00051 Score=63.33 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=45.8
Q ss_pred CCCCCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEe--ecC
Q 023678 20 NKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVE--ELT 95 (279)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~--~~d 95 (279)
-++|+-.|-+..+++ .+++++|.|.||||++|+.|++.|.+++ ..+++.+ +|+.... .+. ....+.+. |+.
T Consensus 14 ~~~~~~~m~~~~~~~-~~~~~~ilVtGatG~iG~~l~~~L~~~g--~~~V~~~-~r~~~~~~~~l~-~~~~v~~~~~Dl~ 88 (377)
T 2q1s_A 14 LVPRGSHMPVIMNAS-KLANTNVMVVGGAGFVGSNLVKRLLELG--VNQVHVV-DNLLSAEKINVP-DHPAVRFSETSIT 88 (377)
T ss_dssp ------------CCG-GGTTCEEEEETTTSHHHHHHHHHHHHTT--CSEEEEE-CCCTTCCGGGSC-CCTTEEEECSCTT
T ss_pred cccccccCCCCCChH-HhCCCEEEEECCccHHHHHHHHHHHHcC--CceEEEE-ECCCCCchhhcc-CCCceEEEECCCC
Confidence 466777775533221 2346799999999999999999999874 1356555 3432221 111 01123332 322
Q ss_pred -c----cCCCCCcEEEecCCCc
Q 023678 96 -E----DSFDGVDIALFSAGGS 112 (279)
Q Consensus 96 -~----~~~~~~DvVf~a~g~~ 112 (279)
. ..+.++|+||.+++..
T Consensus 89 d~~~l~~~~~~~d~Vih~A~~~ 110 (377)
T 2q1s_A 89 DDALLASLQDEYDYVFHLATYH 110 (377)
T ss_dssp CHHHHHHCCSCCSEEEECCCCS
T ss_pred CHHHHHHHhhCCCEEEECCCcc
Confidence 1 2356899999998753
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.51 E-value=8.2e-05 Score=68.11 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee-CCceeEEeecCccCC--CCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-QDKAYTVEELTEDSF--DGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~-~~~~~~v~~~d~~~~--~~~DvVf~a~g~~~s 114 (279)
++||+||| +|.+|+..++.|.+.+...++++++.+++.. .+.... .+....+.+++ +.+ .++|+|+.|+|+...
T Consensus 2 ~~rigiiG-~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~-~ll~~~~vD~V~i~tp~~~H 79 (334)
T 3ohs_X 2 ALRWGIVS-VGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYE-ELAKDPNVEVAYVGTQHPQH 79 (334)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHH-HHHHCTTCCEEEECCCGGGH
T ss_pred ccEEEEEC-chHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHH-HHhcCCCCCEEEECCCcHHH
Confidence 47999999 7999999999998762235788888775421 111110 01111122222 112 368999999999999
Q ss_pred hhhHHHHHhCCCEEE
Q 023678 115 KKFGPIAVEKGSIVV 129 (279)
Q Consensus 115 ~~~~~~~~~aG~~VI 129 (279)
.+++.+++++|..|+
T Consensus 80 ~~~~~~al~~GkhVl 94 (334)
T 3ohs_X 80 KAAVMLCLAAGKAVL 94 (334)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhcCCEEE
Confidence 999999999999776
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0003 Score=61.91 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=53.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecC-ccCCCCCcEEEecCCCch---
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSI--- 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~--- 113 (279)
++||.|.|| |++|+.|++.|.+++| +++.+. |+... ..+...+......|++ .+ +.++|+||.+++...
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~---~V~~~~-r~~~~~~~~~~~~~~~~~~D~~d~~-~~~~d~vi~~a~~~~~~~ 78 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGW---RIIGTS-RNPDQMEAIRASGAEPLLWPGEEPS-LDGVTHLLISTAPDSGGD 78 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTC---EEEEEE-SCGGGHHHHHHTTEEEEESSSSCCC-CTTCCEEEECCCCBTTBC
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCC---EEEEEE-cChhhhhhHhhCCCeEEEecccccc-cCCCCEEEECCCcccccc
Confidence 479999998 9999999999998754 555553 33211 1111111122222322 22 678999999987532
Q ss_pred --hhhhHHHHHh--CCC-EEEEcCCC
Q 023678 114 --SKKFGPIAVE--KGS-IVVDNSSA 134 (279)
Q Consensus 114 --s~~~~~~~~~--aG~-~VIDlS~~ 134 (279)
.+.+.+.+.+ .|+ ++|=.|+.
T Consensus 79 ~~~~~l~~a~~~~~~~~~~~v~~Ss~ 104 (286)
T 3ius_A 79 PVLAALGDQIAARAAQFRWVGYLSTT 104 (286)
T ss_dssp HHHHHHHHHHHHTGGGCSEEEEEEEG
T ss_pred HHHHHHHHHHHhhcCCceEEEEeecc
Confidence 2444555555 454 56656654
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00032 Score=63.35 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=54.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eee-eCCceeEEe--ecC-cc----CCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLS-FQDKAYTVE--ELT-ED----SFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~-~~~~~~~v~--~~d-~~----~~~~~DvVf~a 108 (279)
|++|.|.||||++|+.|++.|.+++ +..+++.+......+. .+. .....+.+. |+. .+ .+.++|+||.+
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 82 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNH-PDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHY 82 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHC-TTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhC-CCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEEC
Confidence 4799999999999999999998762 2346666532211111 111 011123332 332 11 24678999999
Q ss_pred CCCch------------------hhhhHHHHHhCCCEEEEcCCC
Q 023678 109 AGGSI------------------SKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 109 ~g~~~------------------s~~~~~~~~~aG~~VIDlS~~ 134 (279)
++... +..++..+.+.|+++|=.|+.
T Consensus 83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~ 126 (348)
T 1oc2_A 83 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTD 126 (348)
T ss_dssp CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred CcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEeccc
Confidence 87542 123334445557787766654
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00011 Score=65.42 Aligned_cols=87 Identities=17% Similarity=0.286 Sum_probs=53.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc----ee----eeCCceeEEe--ecC-cc----CCCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK----QL----SFQDKAYTVE--ELT-ED----SFDGVD 103 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~----~~----~~~~~~~~v~--~~d-~~----~~~~~D 103 (279)
+++|.|.||||++|+.+++.|.+++|+ ++++ +|+.... .. .+....+.+. |++ .+ .+.++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~---V~~l-~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d 79 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHP---TFLL-VRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVD 79 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCC---EEEE-CCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCC---EEEE-ECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCC
Confidence 468999999999999999999988653 4444 3432211 00 0001122222 332 11 245899
Q ss_pred EEEecCCCc---hhhhhHHHHHhCC-C-EEE
Q 023678 104 IALFSAGGS---ISKKFGPIAVEKG-S-IVV 129 (279)
Q Consensus 104 vVf~a~g~~---~s~~~~~~~~~aG-~-~VI 129 (279)
+||.+++.. ....+++.+.++| + ++|
T Consensus 80 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v 110 (308)
T 1qyc_A 80 VVISTVGSLQIESQVNIIKAIKEVGTVKRFF 110 (308)
T ss_dssp EEEECCCGGGSGGGHHHHHHHHHHCCCSEEE
T ss_pred EEEECCcchhhhhHHHHHHHHHhcCCCceEe
Confidence 999998753 3456667777777 6 455
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00014 Score=66.05 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=62.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCCC--CCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFD--GVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~~--~~DvVf~a~g~~~s~ 115 (279)
.+||+|+|+||..|+.+++.|.+.+ ++++....++..|+.+ .+ +.+. +++ +... ++|+++.|+|+....
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g---~~~V~~V~p~~~g~~~--~G--~~vy~sl~-el~~~~~~D~viI~tP~~~~~ 78 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYG---TKMVGGVTPGKGGTTH--LG--LPVFNTVR-EAVAATGATASVIYVPAPFCK 78 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEECTTCTTCEE--TT--EEEESSHH-HHHHHHCCCEEEECCCGGGHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CeEEEEeCCCccccee--CC--eeccCCHH-HHhhcCCCCEEEEecCHHHHH
Confidence 5899999999999999999988763 3455444443333321 11 2332 221 1123 689999999999999
Q ss_pred hhHHHHHhCCCEE-EEcCCCC
Q 023678 116 KFGPIAVEKGSIV-VDNSSAF 135 (279)
Q Consensus 116 ~~~~~~~~aG~~V-IDlS~~~ 135 (279)
+.+.++.++|+++ |-.+..|
T Consensus 79 ~~~~ea~~~Gi~~iVi~t~G~ 99 (288)
T 2nu8_A 79 DSILEAIDAGIKLIITITEGI 99 (288)
T ss_dssp HHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHCCCCEEEEECCCC
Confidence 9999999999974 5466655
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.47 E-value=5.9e-05 Score=69.03 Aligned_cols=106 Identities=16% Similarity=0.258 Sum_probs=55.8
Q ss_pred CCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCC
Q 023678 23 RTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDG 101 (279)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~ 101 (279)
+.+|+|....+....+++||+||| .|++|..+.+.|.+.+| ++..+ +++. .+.-.+....+.+.. +. +.+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~I~iIG-~G~mG~~~a~~l~~~G~---~V~~~-dr~~-~~~~~l~~~g~~~~~-~~~e~~~~ 87 (320)
T 4dll_A 15 TENLYFQSMTVESDPYARKITFLG-TGSMGLPMARRLCEAGY---ALQVW-NRTP-ARAASLAALGATIHE-QARAAARD 87 (320)
T ss_dssp --------------CCCSEEEEEC-CTTTHHHHHHHHHHTTC---EEEEE-CSCH-HHHHHHHTTTCEEES-SHHHHHTT
T ss_pred ccccceechhhccccCCCEEEEEC-ccHHHHHHHHHHHhCCC---eEEEE-cCCH-HHHHHHHHCCCEeeC-CHHHHHhc
Confidence 344455544333344568999999 69999999999998865 44444 3321 110001011122221 22 23468
Q ss_pred CcEEEecCCCchh-hhhHH-----HHHhCCCEEEEcCCCC
Q 023678 102 VDIALFSAGGSIS-KKFGP-----IAVEKGSIVVDNSSAF 135 (279)
Q Consensus 102 ~DvVf~a~g~~~s-~~~~~-----~~~~aG~~VIDlS~~~ 135 (279)
+|+||.|++.... ++... ..+..|..|||.|+..
T Consensus 88 aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~ 127 (320)
T 4dll_A 88 ADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASIT 127 (320)
T ss_dssp CSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCC
T ss_pred CCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCC
Confidence 9999999997533 22221 2345789999998753
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00015 Score=64.54 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=26.6
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++++|.|.||||++|+.|++.|.++++ +++.+
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~ 37 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGE---EVTVL 37 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTC---CEEEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 3468999999999999999999998865 45555
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00014 Score=64.64 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=54.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc---eeeeCCceeEEeecC-cc----CCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK---QLSFQDKAYTVEELT-ED----SFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~---~~~~~~~~~~v~~~d-~~----~~~~~DvVf~a~g 110 (279)
+++|.|.||||++|+.+++.|.+++ ..+++++. |+.... .+...+......|++ .+ .+.++|+||.+++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~~V~~~~-R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDG--TFKVRVVT-RNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHC--SSEEEEEE-SCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcC--CceEEEEE-cCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 3689999999999999999998863 24566653 432221 111112222222432 11 2468999999987
Q ss_pred Cc----------hhhhhHHHHHhCCC-EEEEcCC
Q 023678 111 GS----------ISKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 111 ~~----------~s~~~~~~~~~aG~-~VIDlS~ 133 (279)
.. ..+.+++.+.++|+ ++|=.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~ 115 (299)
T 2wm3_A 82 YWESCSQEQEVKQGKLLADLARRLGLHYVVYSGL 115 (299)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCccccchHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 42 23345555666776 4553443
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00018 Score=64.12 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=53.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc---e---ee-eCCceeEEe--ecC-c----cCCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK---Q---LS-FQDKAYTVE--ELT-E----DSFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~---~---~~-~~~~~~~v~--~~d-~----~~~~~~Dv 104 (279)
+++|.|.||||++|+.+++.|.++++ +++++ +|+..+. . +. .....+.+. |++ . ..+.++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~-~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~ 79 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGH---PTYVL-FRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDV 79 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEE-CCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC---cEEEE-ECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCE
Confidence 46899999999999999999998864 45555 3432210 0 00 001122222 332 1 12468999
Q ss_pred EEecCCCc-------hhhhhHHHHHhCC-C-EEE
Q 023678 105 ALFSAGGS-------ISKKFGPIAVEKG-S-IVV 129 (279)
Q Consensus 105 Vf~a~g~~-------~s~~~~~~~~~aG-~-~VI 129 (279)
||.+++.. ....+++.+.++| + ++|
T Consensus 80 vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v 113 (313)
T 1qyd_A 80 VISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL 113 (313)
T ss_dssp EEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred EEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence 99998753 3456667777788 6 455
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00024 Score=67.42 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=58.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCCCCcee----eeCCcee--------------------EEe-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQL----SFQDKAY--------------------TVE- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s~G~~~----~~~~~~~--------------------~v~- 92 (279)
|+||+|+|+||.||+..++.+.++ |. ++++.++..+...+.. .+.-+.+ .+.
T Consensus 4 m~rI~ILGsTGSIG~~~l~vi~~~--p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~ 81 (388)
T 1r0k_A 4 PRTVTVLGATGSIGHSTLDLIERN--LDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAA 81 (388)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT--GGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEE
T ss_pred ceEEEEECCCeEeHHHHHHHHHhC--cCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEe
Confidence 379999999999999999999987 86 8988884433321100 0000011 111
Q ss_pred ecC----ccCCCCCcEEEecCCCchhhhhHHHHHhCCCEEEE
Q 023678 93 ELT----EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 93 ~~d----~~~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VID 130 (279)
..+ ..... +|+|+.|++.....+..-.++++|..|+-
T Consensus 82 g~~~~~el~~~~-iDvVV~ai~G~aGl~ptlaAi~aGK~Vvl 122 (388)
T 1r0k_A 82 GADALVEAAMMG-ADWTMAAIIGCAGLKATLAAIRKGKTVAL 122 (388)
T ss_dssp SHHHHHHHHTSC-CSEEEECCCSGGGHHHHHHHHHTTSEEEE
T ss_pred CccHHHHHHcCC-CCEEEEeCCCHHHHHHHHHHHHCCCEEEE
Confidence 000 01124 89999999666677778888999999883
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00044 Score=63.87 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=42.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecC-cc----CCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELT-ED----SFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d-~~----~~~~~DvVf~a~g~ 111 (279)
+++|.|.||||++|+.|++.|.++++ +++.+. |+.... ............|+. .+ .+.++|+||.+++.
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~-r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~ 103 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHEGH---YVIASD-WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD 103 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE-SSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCeEEEECCccHHHHHHHHHHHHCCC---eEEEEE-CCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence 57999999999999999999998754 555553 332211 111111112222332 11 24689999999874
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.43 E-value=8.7e-05 Score=67.62 Aligned_cols=86 Identities=20% Similarity=0.335 Sum_probs=58.2
Q ss_pred CCEEEEECcCcHHHH-HHHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecCccCC-CCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~-eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s 114 (279)
++||+||| +|.+|+ .+++.|.+. |.++++ +.+++..- +.+.. .+....+.+. .+.+ .++|+|+.|+++...
T Consensus 2 ~~~igiIG-~G~ig~~~~~~~l~~~--~~~~l~-v~d~~~~~~~~~a~~~g~~~~~~~~-~~~l~~~~D~V~i~tp~~~h 76 (323)
T 1xea_A 2 SLKIAMIG-LGDIAQKAYLPVLAQW--PDIELV-LCTRNPKVLGTLATRYRVSATCTDY-RDVLQYGVDAVMIHAATDVH 76 (323)
T ss_dssp CEEEEEEC-CCHHHHHTHHHHHTTS--TTEEEE-EECSCHHHHHHHHHHTTCCCCCSST-TGGGGGCCSEEEECSCGGGH
T ss_pred CcEEEEEC-CCHHHHHHHHHHHHhC--CCceEE-EEeCCHHHHHHHHHHcCCCccccCH-HHHhhcCCCEEEEECCchhH
Confidence 47999999 599998 489988776 788988 76553210 11110 0111001121 2233 579999999999999
Q ss_pred hhhHHHHHhCCCEEE
Q 023678 115 KKFGPIAVEKGSIVV 129 (279)
Q Consensus 115 ~~~~~~~~~aG~~VI 129 (279)
.+++.+++++|..|+
T Consensus 77 ~~~~~~al~~Gk~V~ 91 (323)
T 1xea_A 77 STLAAFFLHLGIPTF 91 (323)
T ss_dssp HHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHCCCeEE
Confidence 999999999999665
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00071 Score=65.61 Aligned_cols=64 Identities=22% Similarity=0.356 Sum_probs=42.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecCccCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
+|||.|.||||++|+.|++.|.++++ +++.+. |+.... .+.. ++.+...+.+.++|+||.|.+.
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~---~V~~l~-R~~~~~~~v~~-----d~~~~~~~~l~~~D~Vih~A~~ 211 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH---EVIQLV-RKEPKPGKRFW-----DPLNPASDLLDGADVLVHLAGE 211 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEE-SSSCCTTCEEC-----CTTSCCTTTTTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEE-CCCCCccceee-----cccchhHHhcCCCCEEEECCCC
Confidence 68999999999999999999998854 555553 332221 1111 1111123446789999998875
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.40 E-value=6.8e-05 Score=69.77 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=57.9
Q ss_pred cccCCCCCEEEEECcCcHHHH-HHHHHHHcCCCCceEEEEEeecCCCC-ceeeeC-CceeEEeecCccCC--CCCcEEEe
Q 023678 33 MSYQESAPSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQ-DKAYTVEELTEDSF--DGVDIALF 107 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~-eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~-~~~~~v~~~d~~~~--~~~DvVf~ 107 (279)
|..+|+++||+||| +|.+|. .++..|. + |.++++++.++...- +..... +..-.+.+++ +.+ .++|+|+.
T Consensus 20 ~~~Mm~~irvgiiG-~G~~~~~~~~~~~~-~--~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~-~ll~~~~vD~V~I 94 (361)
T 3u3x_A 20 FQSMMDELRFAAVG-LNHNHIYGQVNCLL-R--AGARLAGFHEKDDALAAEFSAVYADARRIATAE-EILEDENIGLIVS 94 (361)
T ss_dssp ------CCEEEEEC-CCSTTHHHHHHHHH-H--TTCEEEEEECSCHHHHHHHHHHSSSCCEESCHH-HHHTCTTCCEEEE
T ss_pred hhhhccCcEEEEEC-cCHHHHHHHHHHhh-c--CCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHH-HHhcCCCCCEEEE
Confidence 33346679999999 587875 4666665 4 788999998754211 111100 1011122222 112 36899999
Q ss_pred cCCCchhhhhHHHHHhCCCEEE
Q 023678 108 SAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 108 a~g~~~s~~~~~~~~~aG~~VI 129 (279)
|+|+....+++.+++++|..|+
T Consensus 95 ~tp~~~H~~~~~~al~aGkhVl 116 (361)
T 3u3x_A 95 AAVSSERAELAIRAMQHGKDVL 116 (361)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred eCChHHHHHHHHHHHHCCCeEE
Confidence 9999999999999999999877
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00016 Score=65.83 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=52.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eee------eCCceeEEeecC-cc----CCC--CC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLS------FQDKAYTVEELT-ED----SFD--GV 102 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~------~~~~~~~v~~~d-~~----~~~--~~ 102 (279)
++++|.|.||||++|+.|++.|.+++| ++..+. |+.... ... ..+..+...|+. .+ .+. ++
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g~---~V~~l~-R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 84 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAHR---PTYILA-RPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEI 84 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTTC---CEEEEE-CSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCC---CEEEEE-CCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCC
Confidence 356899999999999999999998854 455553 332111 110 012222222332 11 245 89
Q ss_pred cEEEecCCCc---hhhhhHHHHHhCC-CEE
Q 023678 103 DIALFSAGGS---ISKKFGPIAVEKG-SIV 128 (279)
Q Consensus 103 DvVf~a~g~~---~s~~~~~~~~~aG-~~V 128 (279)
|+||.+++.. ....+++.+.++| ++.
T Consensus 85 d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~ 114 (346)
T 3i6i_A 85 DIVVSTVGGESILDQIALVKAMKAVGTIKR 114 (346)
T ss_dssp CEEEECCCGGGGGGHHHHHHHHHHHCCCSE
T ss_pred CEEEECCchhhHHHHHHHHHHHHHcCCceE
Confidence 9999998853 3456666677788 643
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00023 Score=62.56 Aligned_cols=93 Identities=23% Similarity=0.283 Sum_probs=54.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecC-c----cCCCCCcEEEecCCCc-
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT-E----DSFDGVDIALFSAGGS- 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g~~- 112 (279)
++|.|.||||++|+.+++.|.++ ++..+++.+. |+.. ...+...+......|+. . ..+.++|+||.+++..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~-~~g~~V~~~~-r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~ 78 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKK-VPASQIIAIV-RNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHY 78 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTT-SCGGGEEEEE-SCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHh-CCCCeEEEEE-cCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCc
Confidence 46999999999999999999876 1234566664 3321 11111111122222332 1 2356899999988752
Q ss_pred -------hhhhhHHHHHhCCC-EEEEcCCC
Q 023678 113 -------ISKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 113 -------~s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
.+..+++.+.+.|+ ++|=.|+.
T Consensus 79 ~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~ 108 (287)
T 2jl1_A 79 DNTLLIVQHANVVKAARDAGVKHIAYTGYA 108 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred CchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 22344555667787 56655554
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00017 Score=63.60 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=25.2
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
|++++|.|.||||++|+.|++.|.++++
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~ 31 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG 31 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC
Confidence 4568999999999999999999999865
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.39 E-value=5e-05 Score=69.34 Aligned_cols=90 Identities=12% Similarity=0.085 Sum_probs=57.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCc--eeeeCCceeEEeecCc-cCCCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGK--QLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~--~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s 114 (279)
++||+||| .|++|..+.+.|.+.+|. ++... .++. ..+ .+...+ +.+.. +. +.+.++|+||+|++....
T Consensus 24 ~~~I~iIG-~G~mG~~~A~~L~~~G~~--~V~~~-dr~~~~~~~~~~~~~g--~~~~~-~~~e~~~~aDvVi~~vp~~~~ 96 (312)
T 3qsg_A 24 AMKLGFIG-FGEAASAIASGLRQAGAI--DMAAY-DAASAESWRPRAEELG--VSCKA-SVAEVAGECDVIFSLVTAQAA 96 (312)
T ss_dssp -CEEEEEC-CSHHHHHHHHHHHHHSCC--EEEEE-CSSCHHHHHHHHHHTT--CEECS-CHHHHHHHCSEEEECSCTTTH
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCC--eEEEE-cCCCCHHHHHHHHHCC--CEEeC-CHHHHHhcCCEEEEecCchhH
Confidence 57999999 699999999999987642 33333 4421 111 111111 22211 21 234578999999999877
Q ss_pred hhhHHHHH---hCCCEEEEcCCCC
Q 023678 115 KKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 115 ~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
.+.+..+. ..|..|||.|+..
T Consensus 97 ~~~~~~l~~~l~~~~ivvd~st~~ 120 (312)
T 3qsg_A 97 LEVAQQAGPHLCEGALYADFTSCS 120 (312)
T ss_dssp HHHHHHHGGGCCTTCEEEECCCCC
T ss_pred HHHHHhhHhhcCCCCEEEEcCCCC
Confidence 77666554 3688999998753
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00018 Score=64.81 Aligned_cols=159 Identities=14% Similarity=0.158 Sum_probs=87.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecCccCCCCCcEEEecCCCchh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s 114 (279)
|+++||+||| .|.+|+.+.+.|.+++++..++.+. +++. .+ .+... ..+.+..-..+.+.++|+||+|++....
T Consensus 1 M~~~~I~iIG-~G~mG~aia~~l~~~g~~~~~V~v~-dr~~-~~~~~l~~~-~gi~~~~~~~~~~~~aDvVilav~p~~~ 76 (280)
T 3tri_A 1 MNTSNITFIG-GGNMARNIVVGLIANGYDPNRICVT-NRSL-DKLDFFKEK-CGVHTTQDNRQGALNADVVVLAVKPHQI 76 (280)
T ss_dssp -CCSCEEEES-CSHHHHHHHHHHHHTTCCGGGEEEE-CSSS-HHHHHHHHT-TCCEEESCHHHHHSSCSEEEECSCGGGH
T ss_pred CCCCEEEEEc-ccHHHHHHHHHHHHCCCCCCeEEEE-eCCH-HHHHHHHHH-cCCEEeCChHHHHhcCCeEEEEeCHHHH
Confidence 3457999999 5999999999999887655455444 3322 11 11111 0122221112345689999999998777
Q ss_pred hhhHHHH----HhCCCEEEEcCCCCCCC-------CCCc--eeeccCCHHhhhccccCCCCC-cEEECCCChHHHHHHhh
Q 023678 115 KKFGPIA----VEKGSIVVDNSSAFRMV-------ENVP--LVIPEVNPEAMSGIKVGMGKG-ALIANPNCSTIICLMAA 180 (279)
Q Consensus 115 ~~~~~~~----~~aG~~VIDlS~~~R~~-------~~vp--lvvPevN~~~i~~~~~~~~~~-~iVanPgC~tt~l~laL 180 (279)
.+.+..+ +..+..||++++....+ .+.+ -+.|.. +..+.. .. .++.+++++.-..- .+
T Consensus 77 ~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~-p~~v~~------g~~~l~~~~~~~~~~~~-~v 148 (280)
T 3tri_A 77 KMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNT-PSSVRA------GATGLFANETVDKDQKN-LA 148 (280)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCG-GGGGTC------EEEEEECCTTSCHHHHH-HH
T ss_pred HHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCC-hHHhcC------ccEEEEeCCCCCHHHHH-HH
Confidence 6666554 34566888888776432 1122 234532 222221 12 23445556554433 34
Q ss_pred hchhhhcCccEEEE------EEeecccccChhhH
Q 023678 181 TPLHRRAKVTRMVV------STYQAASGAGAAAM 208 (279)
Q Consensus 181 ~PL~~~~~i~~v~v------tt~q~vSGaG~~~~ 208 (279)
.+|++..+- .+.+ +...++||.|=.-+
T Consensus 149 ~~l~~~iG~-~~~v~~E~~~d~~talsgsgpa~~ 181 (280)
T 3tri_A 149 ESIMRAVGL-VIWVSSEDQIEKIAALSGSGPAYI 181 (280)
T ss_dssp HHHHGGGEE-EEECSSHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHCCC-eEEECCHHHhhHHHHHhccHHHHH
Confidence 566665542 2222 33456677775443
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00021 Score=61.70 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=55.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
+++||+|+| +|.+|+.+.+.|.+.++ ++..+ +++.. -+.+...+ +.+.+. .+.+.++|+||.|++.....+
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~---~V~~~-~r~~~~~~~~~~~g--~~~~~~-~~~~~~~DvVi~av~~~~~~~ 98 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGF---KVVVG-SRNPKRTARLFPSA--AQVTFQ-EEAVSSPEVIFVAVFREHYSS 98 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTC---CEEEE-ESSHHHHHHHSBTT--SEEEEH-HHHTTSCSEEEECSCGGGSGG
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHHcC--CceecH-HHHHhCCCEEEECCChHHHHH
Confidence 357899999 89999999999988765 34433 33211 01111111 222222 123568999999999765444
Q ss_pred hHH--HHHhCCCEEEEcCCCCC
Q 023678 117 FGP--IAVEKGSIVVDNSSAFR 136 (279)
Q Consensus 117 ~~~--~~~~aG~~VIDlS~~~R 136 (279)
... ... .|..|||+++...
T Consensus 99 v~~l~~~~-~~~~vv~~s~g~~ 119 (215)
T 2vns_A 99 LCSLSDQL-AGKILVDVSNPTE 119 (215)
T ss_dssp GGGGHHHH-TTCEEEECCCCCH
T ss_pred HHHHHHhc-CCCEEEEeCCCcc
Confidence 432 233 7899999998764
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0002 Score=65.58 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=61.4
Q ss_pred hhhccCCCCCCCCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCC--CCc---eee--
Q 023678 12 HFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRS--AGK---QLS-- 83 (279)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s--~G~---~~~-- 83 (279)
|-+++--.+-+|...|-+ | ++||+||| .|++|..+.+.|.+.+ | ++... .++. ..+ ...
T Consensus 5 ~~~~~~~~~~~~~~~~~~---M-----~m~IgvIG-~G~mG~~lA~~L~~~G~~---~V~~~-dr~~~~~~~~~~~~~~~ 71 (317)
T 4ezb_A 5 HHHSSGVDLGTENLYFQS---M-----MTTIAFIG-FGEAAQSIAGGLGGRNAA---RLAAY-DLRFNDPAASGALRARA 71 (317)
T ss_dssp ----------CCCHHHHT---S-----CCEEEEEC-CSHHHHHHHHHHHTTTCS---EEEEE-CGGGGCTTTHHHHHHHH
T ss_pred cccccccccCcccCcccc---c-----CCeEEEEC-ccHHHHHHHHHHHHcCCC---eEEEE-eCCCccccchHHHHHHH
Confidence 344555555666554432 1 37899999 7999999999999886 4 44444 3332 010 000
Q ss_pred -eCCceeEEe-ecCccCCCCCcEEEecCCCchhhhhHHHHH---hCCCEEEEcCCC
Q 023678 84 -FQDKAYTVE-ELTEDSFDGVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSA 134 (279)
Q Consensus 84 -~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~~s~~~~~~~~---~aG~~VIDlS~~ 134 (279)
..+ . .. ++ .+.+.++|+||+|++.....+.+..+. ..|..|||.|+.
T Consensus 72 ~~~g--~-~~~s~-~e~~~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st~ 123 (317)
T 4ezb_A 72 AELG--V-EPLDD-VAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLNSV 123 (317)
T ss_dssp HHTT--C-EEESS-GGGGGGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECCSC
T ss_pred HHCC--C-CCCCH-HHHHhcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 112 1 22 21 234567999999999987776665553 468899999864
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.36 E-value=3.5e-05 Score=71.87 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=57.8
Q ss_pred CCCCEEEEECcCcHHHHH-HH----HHHHcCCCCceEEE---------EEeecCCCC-ceeee-CCceeEEeecCccCC-
Q 023678 37 ESAPSVAVVGVTGAVGQE-FL----SVLSDRDFPYRSIK---------MLASKRSAG-KQLSF-QDKAYTVEELTEDSF- 99 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~e-Ll----~lL~~~~~p~~~l~---------~l~s~~s~G-~~~~~-~~~~~~v~~~d~~~~- 99 (279)
|+++||+|||++|.+|.. .+ +.+.+. +.+++. ++.+++..- +.+.. .+....+.+++ +.+
T Consensus 4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~--~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~-~ll~ 80 (383)
T 3oqb_A 4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQ--GGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLD-AALA 80 (383)
T ss_dssp CEEEEEEEESTTSTHHHHTTTTTTHHHHHHH--TSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHH-HHHH
T ss_pred CceeEEEEEeccchhhhhhhHHHHHHHHhhc--CceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHH-HHhc
Confidence 457899999999999997 66 666655 444432 455543211 11110 11111122222 111
Q ss_pred -CCCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 100 -DGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 100 -~~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
.++|+|+.|+|+....+++.+++++|..|+
T Consensus 81 ~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~ 111 (383)
T 3oqb_A 81 DKNDTMFFDAATTQARPGLLTQAINAGKHVY 111 (383)
T ss_dssp CSSCCEEEECSCSSSSHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEECCCchHHHHHHHHHHHCCCeEE
Confidence 368999999999999999999999999887
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00064 Score=60.95 Aligned_cols=81 Identities=11% Similarity=0.091 Sum_probs=60.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.|||+++| +|.+|+.+++. + .++++.+.. +..|. + +. ....+++. .+.+.|+|+.|.++..-.++.
T Consensus 12 ~~rV~i~G-~GaIG~~v~~~---~---~leLv~v~~-~k~ge-l---gv-~a~~d~d~-lla~pD~VVe~A~~~av~e~~ 77 (253)
T 1j5p_A 12 HMTVLIIG-MGNIGKKLVEL---G---NFEKIYAYD-RISKD-I---PG-VVRLDEFQ-VPSDVSTVVECASPEAVKEYS 77 (253)
T ss_dssp CCEEEEEC-CSHHHHHHHHH---S---CCSEEEEEC-SSCCC-C---SS-SEECSSCC-CCTTCCEEEECSCHHHHHHHH
T ss_pred cceEEEEC-cCHHHHHHHhc---C---CcEEEEEEe-ccccc-c---Cc-eeeCCHHH-HhhCCCEEEECCCHHHHHHHH
Confidence 58999999 99999999997 2 567776655 33442 1 21 22334432 225889999999999999999
Q ss_pred HHHHhCCCEEEEcCC
Q 023678 119 PIAVEKGSIVVDNSS 133 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~ 133 (279)
.+++++|+-||-.|.
T Consensus 78 ~~iL~aG~dvv~~S~ 92 (253)
T 1j5p_A 78 LQILKNPVNYIIIST 92 (253)
T ss_dssp HHHTTSSSEEEECCG
T ss_pred HHHHHCCCCEEEcCh
Confidence 999999999987664
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00015 Score=66.33 Aligned_cols=87 Identities=8% Similarity=0.046 Sum_probs=57.5
Q ss_pred CCCCEEEEECcCcHHHH-HHHHHHHcCCCCceEEEEEeecCCC-Cceee--eCCceeEEeecCccCC--CCCcEEEecCC
Q 023678 37 ESAPSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSA-GKQLS--FQDKAYTVEELTEDSF--DGVDIALFSAG 110 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~-eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~--~~~~~~~v~~~d~~~~--~~~DvVf~a~g 110 (279)
|+++||+||| +|.+|. .+++.|. + +.++++++.+++.. .+... +++.. .+.+++ +.+ .++|+|+.|+|
T Consensus 2 M~~~rvgiiG-~G~~~~~~~~~~l~-~--~~~~lvav~d~~~~~~~~~a~~~~~~~-~~~~~~-~ll~~~~~D~V~i~tp 75 (336)
T 2p2s_A 2 MKKIRFAAIG-LAHNHIYDMCQQLI-D--AGAELAGVFESDSDNRAKFTSLFPSVP-FAASAE-QLITDASIDLIACAVI 75 (336)
T ss_dssp --CCEEEEEC-CSSTHHHHHHHHHH-H--TTCEEEEEECSCTTSCHHHHHHSTTCC-BCSCHH-HHHTCTTCCEEEECSC
T ss_pred CCccEEEEEC-CChHHHHHhhhhhc-C--CCcEEEEEeCCCHHHHHHHHHhcCCCc-ccCCHH-HHhhCCCCCEEEEeCC
Confidence 5678999999 588885 6777775 4 67899888775432 11111 11111 111211 112 36899999999
Q ss_pred CchhhhhHHHHHhCCCEEE
Q 023678 111 GSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VI 129 (279)
+....+++.+++++|..|+
T Consensus 76 ~~~h~~~~~~al~aGkhVl 94 (336)
T 2p2s_A 76 PCDRAELALRTLDAGKDFF 94 (336)
T ss_dssp GGGHHHHHHHHHHTTCEEE
T ss_pred hhhHHHHHHHHHHCCCcEE
Confidence 9999999999999999766
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.33 E-value=4.4e-05 Score=72.48 Aligned_cols=100 Identities=9% Similarity=0.084 Sum_probs=59.3
Q ss_pred cceeeeeccc-CCCCCEEEEECcCcH---HHHHHHHHHHcCCCCceEEEE-EeecCCCC-ceee--eCCce-eEEeecCc
Q 023678 26 PMFTRVRMSY-QESAPSVAVVGVTGA---VGQEFLSVLSDRDFPYRSIKM-LASKRSAG-KQLS--FQDKA-YTVEELTE 96 (279)
Q Consensus 26 ~~~~~~~~~~-~~~~~kVaIiGATG~---VG~eLl~lL~~~~~p~~~l~~-l~s~~s~G-~~~~--~~~~~-~~v~~~d~ 96 (279)
.|.+...|+. +|+++||+||| +|. +|+..++.+... +.+++++ +.+++..- +... ++... ..+.+++
T Consensus 23 ~~~~~~~~~~~~m~~~rvgiiG-~G~~~~ig~~h~~~~~~~--~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~- 98 (417)
T 3v5n_A 23 MMAIEGSSTETRQKRIRLGMVG-GGSGAFIGAVHRIAARLD--DHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFK- 98 (417)
T ss_dssp ------------CCCEEEEEES-CC--CHHHHHHHHHHHHT--SCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHH-
T ss_pred hcCCccccccccCCcceEEEEc-CCCchHHHHHHHHHHhhC--CCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHH-
Confidence 4555555654 35678999999 576 999988888776 7788886 65543210 1111 11100 0111211
Q ss_pred cCC-------CCCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 97 DSF-------DGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 97 ~~~-------~~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
+.+ .++|+|+.|+|+....+++.+++++|..|+
T Consensus 99 ~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl 138 (417)
T 3v5n_A 99 EMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHVI 138 (417)
T ss_dssp HHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTCEEE
T ss_pred HHHhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCCeEE
Confidence 111 358999999999999999999999999876
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00034 Score=63.34 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=55.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~ 119 (279)
+||+|||+.|.+|+.+.+.|.+.++ ++..+ .++.. . +. .+.+.++|+||+|++.....+.+.
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~---~V~~~-~~~~~-~------------~~-~~~~~~aDvVilavp~~~~~~vl~ 83 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGY---PISIL-DREDW-A------------VA-ESILANADVVIVSVPINLTLETIE 83 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC---CEEEE-CTTCG-G------------GH-HHHHTTCSEEEECSCGGGHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC---eEEEE-ECCcc-c------------CH-HHHhcCCCEEEEeCCHHHHHHHHH
Confidence 5799999889999999999988765 33333 33211 0 10 123467999999999998887777
Q ss_pred HHH---hCCCEEEEcCCC
Q 023678 120 IAV---EKGSIVVDNSSA 134 (279)
Q Consensus 120 ~~~---~aG~~VIDlS~~ 134 (279)
.+. ..|+.|+|.++.
T Consensus 84 ~l~~~l~~~~iv~~~~sv 101 (298)
T 2pv7_A 84 RLKPYLTENMLLADLTSV 101 (298)
T ss_dssp HHGGGCCTTSEEEECCSC
T ss_pred HHHhhcCCCcEEEECCCC
Confidence 663 468899998764
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00032 Score=61.49 Aligned_cols=92 Identities=20% Similarity=0.296 Sum_probs=53.1
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecC-c----cCCCCCcEEEecCCC---
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT-E----DSFDGVDIALFSAGG--- 111 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g~--- 111 (279)
||.|.||||++|+.+++.|.++ ++..+++.+. |+.. ...+...+......|+. . ..+.++|+||.+++.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~-~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~ 78 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKT-VPASQIVAIV-RNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVG 78 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTT-SCGGGEEEEE-SCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-----
T ss_pred CEEEEcCCchHHHHHHHHHHhh-CCCceEEEEE-cChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCch
Confidence 5899999999999999999876 1234566664 3322 11111111122222332 1 235689999998874
Q ss_pred ---chhhhhHHHHHhCCC-EEEEcCCC
Q 023678 112 ---SISKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 112 ---~~s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
..++.+++.+.+.|+ ++|=.|+.
T Consensus 79 ~~~~~~~~l~~a~~~~~~~~~v~~Ss~ 105 (286)
T 2zcu_A 79 QRAPQHRNVINAAKAAGVKFIAYTSLL 105 (286)
T ss_dssp ---CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 234556666666776 45545543
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00027 Score=63.10 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=55.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--------CceeeeCCce----eEEeec-C-ccCCCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------GKQLSFQDKA----YTVEEL-T-EDSFDGVD 103 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--------G~~~~~~~~~----~~v~~~-d-~~~~~~~D 103 (279)
++|||+|+| .|.+|..+...|.+.+| ++..+ .++.. |..+...... +.+.+. + .+.+.++|
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~---~V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 76 (316)
T 2ew2_A 2 NAMKIAIAG-AGAMGSRLGIMLHQGGN---DVTLI-DQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVD 76 (316)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCS
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHhCCC---cEEEE-ECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCC
Confidence 357999999 59999999999988765 44444 33210 1111110000 011111 1 11223899
Q ss_pred EEEecCCCchhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 104 IALFSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 104 vVf~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
+||.|++.....+....+. ..|..|||++..+
T Consensus 77 ~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~ 111 (316)
T 2ew2_A 77 LIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGL 111 (316)
T ss_dssp EEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSS
T ss_pred EEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 9999999887777666553 3578899997755
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00029 Score=62.57 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=56.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeE-EeecCccCCC-CCcEEEecCCCchhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYT-VEELTEDSFD-GVDIALFSAGGSISKK 116 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~-v~~~d~~~~~-~~DvVf~a~g~~~s~~ 116 (279)
+||+||| .|.+|..+.+.|.+.+++ .++..+ +++..- ......+.... ..++ .+.+. ++|+||.|++.....+
T Consensus 2 ~~I~iIG-~G~mG~~~a~~l~~~g~~-~~V~~~-d~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~aDvVilavp~~~~~~ 77 (281)
T 2g5c_A 2 QNVLIVG-VGFMGGSFAKSLRRSGFK-GKIYGY-DINPESISKAVDLGIIDEGTTSI-AKVEDFSPDFVMLSSPVRTFRE 77 (281)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCC-SEEEEE-CSCHHHHHHHHHTTSCSEEESCG-GGGGGTCCSEEEECSCHHHHHH
T ss_pred cEEEEEe-cCHHHHHHHHHHHhcCCC-cEEEEE-eCCHHHHHHHHHCCCcccccCCH-HHHhcCCCCEEEEcCCHHHHHH
Confidence 6899999 799999999999887653 344443 332110 00101111111 1122 13456 8999999999887777
Q ss_pred hHHHHH---hCCCEEEEcCCC
Q 023678 117 FGPIAV---EKGSIVVDNSSA 134 (279)
Q Consensus 117 ~~~~~~---~aG~~VIDlS~~ 134 (279)
.+..+. ..|..|+|.++.
T Consensus 78 v~~~l~~~l~~~~iv~~~~~~ 98 (281)
T 2g5c_A 78 IAKKLSYILSEDATVTDQGSV 98 (281)
T ss_dssp HHHHHHHHSCTTCEEEECCSC
T ss_pred HHHHHHhhCCCCcEEEECCCC
Confidence 665543 468899998764
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0003 Score=67.97 Aligned_cols=91 Identities=13% Similarity=0.235 Sum_probs=62.9
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-ee-e-e-C--C-----------------ceeEEe
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QL-S-F-Q--D-----------------KAYTVE 92 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~-~-~-~--~-----------------~~~~v~ 92 (279)
.++++||+|||+ |.+|+.+++.+.+. |.++++++++++.... .. . + + . ....+.
T Consensus 20 ~~k~IRVGIIGa-G~iG~~~~~~l~~~--~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~ 96 (446)
T 3upl_A 20 TGKPIRIGLIGA-GEMGTDIVTQVARM--QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVT 96 (446)
T ss_dssp TTCCEEEEEECC-SHHHHHHHHHHTTS--SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEE
T ss_pred cCCceEEEEECC-hHHHHHHHHHHhhC--CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEE
Confidence 445799999995 99999999998876 9999999987643210 00 0 0 1 0 011222
Q ss_pred -ecCccCC--CCCcEEEecCCCc-hhhhhHHHHHhCCCEEEE
Q 023678 93 -ELTEDSF--DGVDIALFSAGGS-ISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 93 -~~d~~~~--~~~DvVf~a~g~~-~s~~~~~~~~~aG~~VID 130 (279)
+++ +.+ .++|+|+.|+|+. ...+++.+++++|..|+-
T Consensus 97 ~D~e-eLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~ 137 (446)
T 3upl_A 97 DDND-LILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVM 137 (446)
T ss_dssp SCHH-HHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHH-HHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEe
Confidence 221 112 3699999999874 568899999999999983
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00052 Score=62.07 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=53.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-c----cCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-E----DSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g~~~ 113 (279)
+++|.|.||||++|+.|++.|.++++ +++.+ +++.... +......|+. . ..+.++|+||.+.+...
T Consensus 19 ~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~-~r~~~~~-----~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~ 89 (347)
T 4id9_A 19 SHMILVTGSAGRVGRAVVAALRTQGR---TVRGF-DLRPSGT-----GGEEVVGSLEDGQALSDAIMGVSAVLHLGAFMS 89 (347)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTC---CEEEE-ESSCCSS-----CCSEEESCTTCHHHHHHHHTTCSEEEECCCCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCC---EEEEE-eCCCCCC-----CccEEecCcCCHHHHHHHHhCCCEEEECCcccC
Confidence 47899999999999999999998864 45555 3433221 1122222332 1 12468999999876421
Q ss_pred ----------------hhhhHHHHHhCCC-EEEEcCCC
Q 023678 114 ----------------SKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 114 ----------------s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
+..+++.+.+.|+ ++|=.|+.
T Consensus 90 ~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~ 127 (347)
T 4id9_A 90 WAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSG 127 (347)
T ss_dssp SSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCH
Confidence 1334555667777 56656653
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00026 Score=65.58 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=59.6
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC----CCceEEEEEeecCCCC--ceee------e---CC--ceeEEeecCccCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD----FPYRSIKMLASKRSAG--KQLS------F---QD--KAYTVEELTEDSF 99 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~----~p~~~l~~l~s~~s~G--~~~~------~---~~--~~~~v~~~d~~~~ 99 (279)
|+++||+|+| .|.||+.+++.|.++. -+.++++.+++++... ..+. . .+ ....+ +. .+.+
T Consensus 2 Mk~irVgIiG-~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~-~e~l 78 (325)
T 3ing_A 2 MKEIRIILMG-TGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SG-PEDL 78 (325)
T ss_dssp -CEEEEEEEC-CSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CS-GGGG
T ss_pred CceEEEEEEc-CcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CH-HHHh
Confidence 5679999999 8999999999997630 1678899887664321 0000 0 00 00111 11 1112
Q ss_pred --CCCcEEEecCCCch----hhhhHHHHHhCCCEEEE
Q 023678 100 --DGVDIALFSAGGSI----SKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 100 --~~~DvVf~a~g~~~----s~~~~~~~~~aG~~VID 130 (279)
.++|+|+.|+++.. +.++..+++++|+.||-
T Consensus 79 ~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVt 115 (325)
T 3ing_A 79 MGEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVT 115 (325)
T ss_dssp TTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEE
Confidence 36899999998742 35889999999999995
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00022 Score=68.85 Aligned_cols=91 Identities=21% Similarity=0.196 Sum_probs=61.6
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC-------CCceEEEEEeecCCCCceeeeCCceeEEeecCccCC--CCCcEEEe
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALF 107 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~-------~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~--~~~DvVf~ 107 (279)
|+++||+|+| .|.+|+.+++.|.+|. .+.++++.+++++.. +.-.+........+++ +.+ .++|+|+.
T Consensus 8 Mk~irIgIIG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~-~~~~~~~~~~~~~d~~-ell~d~diDvVve 84 (444)
T 3mtj_A 8 MKPIHVGLLG-LGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLD-KAEALAGGLPLTTNPF-DVVDDPEIDIVVE 84 (444)
T ss_dssp CSCEEEEEEC-CHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHH-HHHHHHTTCCEESCTH-HHHTCTTCCEEEE
T ss_pred hCcccEEEEC-CCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHH-HhhhhcccCcccCCHH-HHhcCCCCCEEEE
Confidence 4568999999 8999999999886531 267888888765421 1101100011112221 111 36899999
Q ss_pred cCCC-chhhhhHHHHHhCCCEEEE
Q 023678 108 SAGG-SISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 108 a~g~-~~s~~~~~~~~~aG~~VID 130 (279)
|+|+ ..+.+++.+++++|..||-
T Consensus 85 ~tp~~~~h~~~~~~AL~aGKhVvt 108 (444)
T 3mtj_A 85 LIGGLEPARELVMQAIANGKHVVT 108 (444)
T ss_dssp CCCSSTTHHHHHHHHHHTTCEEEE
T ss_pred cCCCchHHHHHHHHHHHcCCEEEE
Confidence 9996 8889999999999999983
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00058 Score=55.49 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=55.8
Q ss_pred CCEEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC-CCCcEEEecCCCchh
Q 023678 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s 114 (279)
..+|+|+||| |..|..+++.|.+++| ++..+. .+..++.+ .+ ..+.+ +..++ ..+|+++.|++....
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~---~v~~vn-p~~~~~~i--~G--~~~~~-sl~el~~~vDlavi~vp~~~~ 83 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY---RVLPVN-PRFQGEEL--FG--EEAVA-SLLDLKEPVDILDVFRPPSAL 83 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTC---EEEEEC-GGGTTSEE--TT--EECBS-SGGGCCSCCSEEEECSCHHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCC---EEEEeC-CCcccCcC--CC--EEecC-CHHHCCCCCCEEEEEeCHHHH
Confidence 3689999998 8999999999998876 444443 32223333 11 22221 11222 468999999999999
Q ss_pred hhhHHHHHhCCCE
Q 023678 115 KKFGPIAVEKGSI 127 (279)
Q Consensus 115 ~~~~~~~~~aG~~ 127 (279)
.+.++++.++|++
T Consensus 84 ~~v~~~~~~~gi~ 96 (140)
T 1iuk_A 84 MDHLPEVLALRPG 96 (140)
T ss_dssp TTTHHHHHHHCCS
T ss_pred HHHHHHHHHcCCC
Confidence 9999999888885
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00035 Score=63.68 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=62.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEee-cCccCCC--CCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSFD--GVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~-~d~~~~~--~~DvVf~a~g~~~s~ 115 (279)
..+|+|+||||..|+.+++.|.+.++. ++.-..++..|+.+ .+ +.+.+ ++ +... ++|+++.++++..+.
T Consensus 13 ~~~v~V~Gasg~~G~~~~~~l~~~g~~---~V~~VnP~~~g~~i--~G--~~vy~sl~-el~~~~~~Dv~ii~vp~~~~~ 84 (294)
T 2yv1_A 13 NTKAIVQGITGRQGSFHTKKMLECGTK---IVGGVTPGKGGQNV--HG--VPVFDTVK-EAVKETDANASVIFVPAPFAK 84 (294)
T ss_dssp TCCEEEETTTSHHHHHHHHHHHHTTCC---EEEEECTTCTTCEE--TT--EEEESSHH-HHHHHHCCCEEEECCCHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCe---EEEEeCCCCCCceE--CC--EeeeCCHH-HHhhcCCCCEEEEccCHHHHH
Confidence 468999999999999999999887543 44333344334332 11 33332 21 1123 689999999999999
Q ss_pred hhHHHHHhCCCE-EEEcCCCC
Q 023678 116 KFGPIAVEKGSI-VVDNSSAF 135 (279)
Q Consensus 116 ~~~~~~~~aG~~-VIDlS~~~ 135 (279)
+.+.++.++|++ +|-.+..|
T Consensus 85 ~~v~ea~~~Gi~~vVi~t~G~ 105 (294)
T 2yv1_A 85 DAVFEAIDAGIELIVVITEHI 105 (294)
T ss_dssp HHHHHHHHTTCSEEEECCSCC
T ss_pred HHHHHHHHCCCCEEEEECCCC
Confidence 999999999998 66567666
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00078 Score=57.84 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=52.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
++||+|+| .|.+|+.+.+.|.+.++ ++..+ +++.. .+.++|+||+|++....++.+
T Consensus 19 ~~~I~iiG-~G~mG~~la~~l~~~g~---~V~~~-~~~~~-------------------~~~~aD~vi~av~~~~~~~v~ 74 (209)
T 2raf_A 19 GMEITIFG-KGNMGQAIGHNFEIAGH---EVTYY-GSKDQ-------------------ATTLGEIVIMAVPYPALAALA 74 (209)
T ss_dssp -CEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CTTCC-------------------CSSCCSEEEECSCHHHHHHHH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC---EEEEE-cCCHH-------------------HhccCCEEEEcCCcHHHHHHH
Confidence 47899999 79999999999988754 44433 33211 346789999999976665555
Q ss_pred HHH---HhCCCEEEEcCCCCC
Q 023678 119 PIA---VEKGSIVVDNSSAFR 136 (279)
Q Consensus 119 ~~~---~~aG~~VIDlS~~~R 136 (279)
..+ .+ |..|||.++.+.
T Consensus 75 ~~l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 75 KQYATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp HHTHHHHT-TSEEEECCCCBC
T ss_pred HHHHHhcC-CCEEEEECCCCC
Confidence 443 34 899999988653
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00037 Score=62.44 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=54.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCc---e---e---eeCCceeEEeecC-c----cCCCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGK---Q---L---SFQDKAYTVEELT-E----DSFDGVD 103 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~---~---~---~~~~~~~~v~~~d-~----~~~~~~D 103 (279)
+++|.|.||||++|+.+++.|.+++| +++++ +|+. .+. . + ...+..+...|++ . ..+.++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~-~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d 79 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSH---PTFIY-ARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVD 79 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTC---CEEEE-ECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCS
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCC---cEEEE-ECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCC
Confidence 46899999999999999999998864 44555 3432 110 0 0 0112222222432 1 1256899
Q ss_pred EEEecCCC---chhhhhHHHHHhCC-C-EEE
Q 023678 104 IALFSAGG---SISKKFGPIAVEKG-S-IVV 129 (279)
Q Consensus 104 vVf~a~g~---~~s~~~~~~~~~aG-~-~VI 129 (279)
+||.+++. ...+.+++.+.++| + ++|
T Consensus 80 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 80 IVISALPFPMISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp EEEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred EEEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence 99999875 34566677777778 6 455
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0011 Score=54.02 Aligned_cols=80 Identities=13% Similarity=0.201 Sum_probs=56.1
Q ss_pred CCEEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC-CCCcEEEecCCCchh
Q 023678 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s 114 (279)
..+|+||||+ |..|..+++.|.+++| ++..+. .+ +..+ .+ ..+.. +..++ ..+|+|+.|++....
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~---~v~~Vn-p~--~~~i--~G--~~~y~-sl~~l~~~vDlvvi~vp~~~~ 90 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGY---DVYPVN-PK--YEEV--LG--RKCYP-SVLDIPDKIEVVDLFVKPKLT 90 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEEC-TT--CSEE--TT--EECBS-SGGGCSSCCSEEEECSCHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCC---EEEEEC-CC--CCeE--CC--eeccC-CHHHcCCCCCEEEEEeCHHHH
Confidence 4689999998 8999999999998866 444442 22 2222 11 22221 12222 468999999999999
Q ss_pred hhhHHHHHhCCCEEE
Q 023678 115 KKFGPIAVEKGSIVV 129 (279)
Q Consensus 115 ~~~~~~~~~aG~~VI 129 (279)
.+.+..+.++|++.|
T Consensus 91 ~~vv~~~~~~gi~~i 105 (144)
T 2d59_A 91 MEYVEQAIKKGAKVV 105 (144)
T ss_dssp HHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHcCCCEE
Confidence 999999999988644
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0011 Score=58.52 Aligned_cols=91 Identities=12% Similarity=0.120 Sum_probs=57.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC---Cce--eEEeecCccCCCCCcEEEecCCCch
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ---DKA--YTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~---~~~--~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
|||+|+|+ |.+|..+...|.+.+| ++..+ .++.. -..+... +.. ..+...+.+.+.++|+||.|++...
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~---~V~~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~ 75 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGH---EVQGW-LRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ 75 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCC---CEEEE-EcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHh
Confidence 58999995 9999999999988765 44444 33221 1122211 111 1111112233457999999999988
Q ss_pred hhhhHHHHHh---CCCEEEEcCCCC
Q 023678 114 SKKFGPIAVE---KGSIVVDNSSAF 135 (279)
Q Consensus 114 s~~~~~~~~~---aG~~VIDlS~~~ 135 (279)
..+.+..+.. .|..|||++..+
T Consensus 76 ~~~v~~~l~~~l~~~~~vv~~~~g~ 100 (291)
T 1ks9_A 76 VSDAVKSLASTLPVTTPILLIHNGM 100 (291)
T ss_dssp HHHHHHHHHTTSCTTSCEEEECSSS
T ss_pred HHHHHHHHHhhCCCCCEEEEecCCC
Confidence 7777766543 477899987755
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0013 Score=58.62 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=39.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ecCccC----CCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTEDS----FDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d~~~----~~~~DvVf~a~g~ 111 (279)
|++|.|.||||++|+.|++.|.+++ .++.+..+ +.+..-. ....+.+. |+..+. +.++|+||.+.+.
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g----~~v~~~~~-~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~~ 73 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN----EIVVIDNL-SSGNEEF-VNEAARLVKADLAADDIKDYLKGAEEVWHIAAN 73 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS----CEEEECCC-SSCCGGG-SCTTEEEECCCTTTSCCHHHHTTCSEEEECCCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC----CEEEEEcC-CCCChhh-cCCCcEEEECcCChHHHHHHhcCCCEEEECCCC
Confidence 3589999999999999999999874 34444332 2221100 01112222 332222 3589999988763
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00022 Score=65.56 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=60.8
Q ss_pred CCCEEEEECcCc-HHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecCccCC--CCCcEEEecCCCc
Q 023678 38 SAPSVAVVGVTG-AVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELTEDSF--DGVDIALFSAGGS 112 (279)
Q Consensus 38 ~~~kVaIiGATG-~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~~~--~~~DvVf~a~g~~ 112 (279)
+++||+||| +| .+|+..++.|.+.+ |.++++++.+++..- +.... .+..-.+.+++ +.+ .++|+|+.|+|+.
T Consensus 17 ~~irvgiIG-~G~~~g~~~~~~l~~~~-~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~-~ll~~~~vD~V~i~tp~~ 93 (340)
T 1zh8_A 17 RKIRLGIVG-CGIAARELHLPALKNLS-HLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYE-ELLESGLVDAVDLTLPVE 93 (340)
T ss_dssp CCEEEEEEC-CSHHHHHTHHHHHHTTT-TTEEEEEEECSSHHHHHHHHHHHSSCEEESCHH-HHHHSSCCSEEEECCCGG
T ss_pred CceeEEEEe-cCHHHHHHHHHHHHhCC-CceEEEEEEcCCHHHHHHHHHHhCCCcccCCHH-HHhcCCCCCEEEEeCCch
Confidence 358999999 57 89999999887642 678999887754211 11110 01111122222 112 3689999999999
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
...+++.+++++|..|+
T Consensus 94 ~H~~~~~~al~aGkhVl 110 (340)
T 1zh8_A 94 LNLPFIEKALRKGVHVI 110 (340)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHCCCcEE
Confidence 99999999999999776
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.24 E-value=7.5e-05 Score=69.99 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=61.2
Q ss_pred CCEEEEECcCc-HHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecCccCC--CCCcEEEecCCCch
Q 023678 39 APSVAVVGVTG-AVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELTEDSF--DGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG-~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~~~--~~~DvVf~a~g~~~ 113 (279)
++||+|||+ | .+|...++.|.+. |.++++++.+++..- +.... .+.. .+.+++ +.+ .++|+|+.|+++..
T Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~--~~~~l~av~d~~~~~~~~~a~~~g~~-~~~~~~-ell~~~~vD~V~i~tp~~~ 76 (387)
T 3moi_A 2 KIRFGICGL-GFAGSVLMAPAMRHH--PDAQIVAACDPNEDVRERFGKEYGIP-VFATLA-EMMQHVQMDAVYIASPHQF 76 (387)
T ss_dssp CEEEEEECC-SHHHHTTHHHHHHHC--TTEEEEEEECSCHHHHHHHHHHHTCC-EESSHH-HHHHHSCCSEEEECSCGGG
T ss_pred ceEEEEEeC-CHHHHHHHHHHHHhC--CCeEEEEEEeCCHHHHHHHHHHcCCC-eECCHH-HHHcCCCCCEEEEcCCcHH
Confidence 579999995 6 9999999999887 899999887654211 11110 0111 122221 112 36899999999999
Q ss_pred hhhhHHHHHhCCCEEE
Q 023678 114 SKKFGPIAVEKGSIVV 129 (279)
Q Consensus 114 s~~~~~~~~~aG~~VI 129 (279)
..+++.+++++|..|+
T Consensus 77 H~~~~~~al~aGk~Vl 92 (387)
T 3moi_A 77 HCEHVVQASEQGLHII 92 (387)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCcee
Confidence 9999999999999877
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00033 Score=62.15 Aligned_cols=87 Identities=16% Similarity=0.212 Sum_probs=53.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCc----e---e---eeCCceeEEeecC-c----cCCCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGK----Q---L---SFQDKAYTVEELT-E----DSFDGV 102 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~----~---~---~~~~~~~~v~~~d-~----~~~~~~ 102 (279)
+++|.|.||||++|+.+++.|.+++| +++++ +|+. .+. . + ...+..+...|++ . ..+.++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~-~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~ 77 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN---PTYAL-VRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQV 77 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC---CEEEE-ECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTC
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC---cEEEE-ECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCC
Confidence 46899999999999999999988765 34444 3432 110 0 0 0112222222432 1 124689
Q ss_pred cEEEecCCCc---hhhhhHHHHHhCC-C-EEE
Q 023678 103 DIALFSAGGS---ISKKFGPIAVEKG-S-IVV 129 (279)
Q Consensus 103 DvVf~a~g~~---~s~~~~~~~~~aG-~-~VI 129 (279)
|+||.+++.. ....+++.+.++| + ++|
T Consensus 78 d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v 109 (307)
T 2gas_A 78 DIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF 109 (307)
T ss_dssp SEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred CEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence 9999998753 3456666667777 6 455
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0007 Score=56.69 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=52.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC---ccCCCC--CcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---EDSFDG--VDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d---~~~~~~--~DvVf~a~g~~~ 113 (279)
+++|.|.||||++|+.+++.|.++++ ..+++.+ +|+... .. ..+.+...| .+.+.. +|+||.|++...
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~-~~~V~~~-~r~~~~---~~--~~~~~~~~D~~~~~~~~~~~~d~vi~~a~~~~ 77 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPT-LAKVIAP-ARKALA---EH--PRLDNPVGPLAELLPQLDGSIDTAFCCLGTTI 77 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTT-CCEEECC-BSSCCC---CC--TTEECCBSCHHHHGGGCCSCCSEEEECCCCCH
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCC-CCeEEEE-eCCCcc---cC--CCceEEeccccCHHHHHHhhhcEEEECeeecc
Confidence 46899999999999999999998843 1255554 343322 11 111111111 111111 899999987542
Q ss_pred ----------------hhhhHHHHHhCCC-EEEEcCCCC
Q 023678 114 ----------------SKKFGPIAVEKGS-IVVDNSSAF 135 (279)
Q Consensus 114 ----------------s~~~~~~~~~aG~-~VIDlS~~~ 135 (279)
...+++.+.+.|. ++|=.|+..
T Consensus 78 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~ 116 (215)
T 2a35_A 78 KEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALG 116 (215)
T ss_dssp HHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred ccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 1334445556776 466666643
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00028 Score=62.01 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=59.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC---------------ceeeeCCceeEEeecCccCCCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG---------------KQLSFQDKAYTVEELTEDSFDGV 102 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G---------------~~~~~~~~~~~v~~~d~~~~~~~ 102 (279)
..+||+||| +|.+|+.+.+.|.+.+| ++... +++..- ..+..........+. .+.+.++
T Consensus 18 ~~~kIgiIG-~G~mG~alA~~L~~~G~---~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~a 91 (245)
T 3dtt_A 18 QGMKIAVLG-TGTVGRTMAGALADLGH---EVTIG-TRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAF-ADVAAGA 91 (245)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-ESCHHHHHTCC-------CCHHHHGGGSTTCEEEEH-HHHHHHC
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC---EEEEE-eCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCH-HHHHhcC
Confidence 357999999 79999999999998865 44444 332210 000000001122221 1234578
Q ss_pred cEEEecCCCchhhhhHHHH---HhCCCEEEEcCCCCCCCC
Q 023678 103 DIALFSAGGSISKKFGPIA---VEKGSIVVDNSSAFRMVE 139 (279)
Q Consensus 103 DvVf~a~g~~~s~~~~~~~---~~aG~~VIDlS~~~R~~~ 139 (279)
|+||+|++.....+.+..+ .-.|..|||.+..+..++
T Consensus 92 DvVilavp~~~~~~~~~~i~~~~l~g~ivi~~s~~~~~~~ 131 (245)
T 3dtt_A 92 ELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSH 131 (245)
T ss_dssp SEEEECSCGGGHHHHHHHHCHHHHTTSEEEECCCCEECTT
T ss_pred CEEEEccCcHHHHHHHHHhhhhhcCCCEEEECCCCCCCcC
Confidence 9999999988766655433 127899999998764443
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0018 Score=58.02 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=53.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEE--eecCc-c-----CCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTV--EELTE-D-----SFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v--~~~d~-~-----~~~~~DvVf~a~g 110 (279)
|+|.|.||||++|+.|++.|.++ +..+++.+. |+... ..+. ....+.+ .|+.. . .+.++|+||.|++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~--~g~~V~~~~-r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~ 76 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLRE--DHYEVYGLD-IGSDAISRFL-NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHS--TTCEEEEEE-SCCGGGGGGT-TCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CeEEEECCCcHHHHHHHHHHHHh--CCCEEEEEe-CCcchHHHhh-cCCCeEEEeccccCcHHHHHhhccCCCEEEEccc
Confidence 48999999999999999999887 334666553 32211 0000 1112222 23321 1 1247899999876
Q ss_pred Cch------------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 111 GSI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 111 ~~~------------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
... ...+++.+.+.|.++|=.|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~ 119 (345)
T 2bll_A 77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSE 119 (345)
T ss_dssp CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred ccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHH
Confidence 421 1233445556777777777743
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00087 Score=58.56 Aligned_cols=93 Identities=17% Similarity=0.248 Sum_probs=59.6
Q ss_pred CCEEEEECcCcHHHHHHHHH-HHcCCCCceEEEEEeecC--CCCceeeeCCceeEEeecC-c-cCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSV-LSDRDFPYRSIKMLASKR--SAGKQLSFQDKAYTVEELT-E-DSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~l-L~~~~~p~~~l~~l~s~~--s~G~~~~~~~~~~~v~~~d-~-~~~~~~DvVf~a~g~~~ 113 (279)
.+||+|+| .|.+|+.+++. +.++ +.++++.+.+.+ ..|+.+. + +.+...+ . +.+...|+|+.|+|+..
T Consensus 85 ~~rV~IIG-AG~~G~~La~~~~~~~--~g~~iVg~~D~dp~k~g~~i~--g--v~V~~~~dl~eli~~~D~ViIAvPs~~ 157 (215)
T 2vt3_A 85 MTDVILIG-VGNLGTAFLHYNFTKN--NNTKISMAFDINESKIGTEVG--G--VPVYNLDDLEQHVKDESVAILTVPAVA 157 (215)
T ss_dssp --CEEEEC-CSHHHHHHHHCC--------CCEEEEEESCTTTTTCEET--T--EEEEEGGGHHHHCSSCCEEEECSCHHH
T ss_pred CCEEEEEc-cCHHHHHHHHHHhccc--CCcEEEEEEeCCHHHHHhHhc--C--CeeechhhHHHHHHhCCEEEEecCchh
Confidence 47899999 59999999995 2233 567888887643 3444332 2 3333322 1 12222399999999999
Q ss_pred hhhhHHHHHhCCCEEEEcCCCCCCC
Q 023678 114 SKKFGPIAVEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 114 s~~~~~~~~~aG~~VIDlS~~~R~~ 138 (279)
..+.+..+.++|+..|=+-.+.+++
T Consensus 158 ~~ei~~~l~~aGi~~Ilnf~P~~l~ 182 (215)
T 2vt3_A 158 AQSITDRLVALGIKGILNFTPARLN 182 (215)
T ss_dssp HHHHHHHHHHTTCCEEEECSSCCCC
T ss_pred HHHHHHHHHHcCCCEEEEcCceecc
Confidence 9999999999999855455555554
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00026 Score=63.18 Aligned_cols=84 Identities=18% Similarity=0.145 Sum_probs=52.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC--ccCCC--CCcEEEecCCCch
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT--EDSFD--GVDIALFSAGGSI 113 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d--~~~~~--~~DvVf~a~g~~~ 113 (279)
++++|.|.||||++|+.|++.|.++++ +++.+ .++..+ ++.+.+ ...+. ++|+||.+++...
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~---~v~~~-~r~~~~----------D~~d~~~~~~~~~~~~~d~vih~a~~~~ 67 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGD---VELVL-RTRDEL----------NLLDSRAVHDFFASERIDQVYLAAAKVG 67 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTT---EEEEC-CCTTTC----------CTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCC---eEEEE-ecCccC----------CccCHHHHHHHHHhcCCCEEEEcCeecC
Confidence 457999999999999999999998754 44444 333211 111111 01234 7899999887532
Q ss_pred -------------------hhhhHHHHHhCCC-EEEEcCCCC
Q 023678 114 -------------------SKKFGPIAVEKGS-IVVDNSSAF 135 (279)
Q Consensus 114 -------------------s~~~~~~~~~aG~-~VIDlS~~~ 135 (279)
+..++..+.+.|+ ++|=.|+..
T Consensus 68 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~ 109 (321)
T 1e6u_A 68 GIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSC 109 (321)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred CcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHH
Confidence 1233445556777 677677754
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00043 Score=61.30 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=55.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEE-eecCccCCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTV-EELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
|||+||| .|.+|+.+.+.|.+.+| ++..+ +++..- ..+...+....+ .+++ +. .++|+||+|++.....+.
T Consensus 1 m~i~iiG-~G~~G~~~a~~l~~~g~---~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~-~~-~~~D~vi~av~~~~~~~~ 73 (279)
T 2f1k_A 1 MKIGVVG-LGLIGASLAGDLRRRGH---YLIGV-SRQQSTCEKAVERQLVDEAGQDLS-LL-QTAKIIFLCTPIQLILPT 73 (279)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHTTSCSEEESCGG-GG-TTCSEEEECSCHHHHHHH
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCC---EEEEE-ECCHHHHHHHHhCCCCccccCCHH-Hh-CCCCEEEEECCHHHHHHH
Confidence 5899999 79999999999988754 44444 332110 011111111112 1221 23 689999999998877777
Q ss_pred HHHHH---hCCCEEEEcCC
Q 023678 118 GPIAV---EKGSIVVDNSS 133 (279)
Q Consensus 118 ~~~~~---~aG~~VIDlS~ 133 (279)
+..+. ..|..|||.++
T Consensus 74 ~~~l~~~~~~~~~vv~~~~ 92 (279)
T 2f1k_A 74 LEKLIPHLSPTAIVTDVAS 92 (279)
T ss_dssp HHHHGGGSCTTCEEEECCS
T ss_pred HHHHHhhCCCCCEEEECCC
Confidence 76653 35889999855
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00034 Score=63.17 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=55.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCc-cCCCCCcEEEecCCCc-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGS-ISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~-~s~ 115 (279)
++||+||| .|++|..+.+.|.+++|+ +..+ +++.. -..+...+ +.+.. +. +... +|+||.|++.. ..+
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~---V~~~-dr~~~~~~~~~~~g--~~~~~-~~~~~~~-aDvvi~~vp~~~~~~ 85 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPGG---VTVY-DIRIEAMTPLAEAG--ATLAD-SVADVAA-ADLIHITVLDDAQVR 85 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTTC---EEEE-CSSTTTSHHHHHTT--CEECS-SHHHHTT-SSEEEECCSSHHHHH
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCe---EEEE-eCCHHHHHHHHHCC--CEEcC-CHHHHHh-CCEEEEECCChHHHH
Confidence 47899999 799999999999988763 4344 33221 11111111 22221 22 2245 99999999975 334
Q ss_pred hhHHHHH---hCCCEEEEcCCCC
Q 023678 116 KFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 116 ~~~~~~~---~aG~~VIDlS~~~ 135 (279)
+.+..+. ..|..|||.|+..
T Consensus 86 ~v~~~l~~~l~~g~ivv~~st~~ 108 (296)
T 3qha_A 86 EVVGELAGHAKPGTVIAIHSTIS 108 (296)
T ss_dssp HHHHHHHTTCCTTCEEEECSCCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCC
Confidence 4444443 4688999998753
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00081 Score=58.74 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=68.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC---CCc-eeeeCCceeEEeecC-c-cCC--CCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGK-QLSFQDKAYTVEELT-E-DSF--DGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s---~G~-~~~~~~~~~~v~~~d-~-~~~--~~~DvVf~a~g 110 (279)
+.+|+|+|| |..|+.|++.+.. ....++++.+.+.+. .|+ .+ .+ +.|...+ . +.+ .++|+++.|+|
T Consensus 84 ~~~V~IvGa-G~lG~aLa~~~~~-~~~g~~iVg~~D~dp~~kiG~~~i--~G--vpV~~~~dL~~~v~~~~Id~vIIAvP 157 (212)
T 3keo_A 84 TTNVMLVGC-GNIGRALLHYRFH-DRNKMQISMAFDLDSNDLVGKTTE--DG--IPVYGISTINDHLIDSDIETAILTVP 157 (212)
T ss_dssp CEEEEEECC-SHHHHHHTTCCCC-TTSSEEEEEEEECTTSTTTTCBCT--TC--CBEEEGGGHHHHC-CCSCCEEEECSC
T ss_pred CCEEEEECc-CHHHHHHHHhhhc-ccCCeEEEEEEeCCchhccCceeE--CC--eEEeCHHHHHHHHHHcCCCEEEEecC
Confidence 468999996 9999999987532 226788888876543 344 33 12 3344433 1 112 36899999999
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCCCCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~~R~~ 138 (279)
...+.+.++.+.++|++-|-|-++.++.
T Consensus 158 s~~aq~v~d~lv~~GIk~I~nFap~~l~ 185 (212)
T 3keo_A 158 STEAQEVADILVKAGIKGILSFSPVHLT 185 (212)
T ss_dssp GGGHHHHHHHHHHHTCCEEEECSSSCCC
T ss_pred chhHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 9999999999999999999888888775
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00055 Score=63.13 Aligned_cols=92 Identities=21% Similarity=0.304 Sum_probs=55.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc---eeee-CCceeEEee-cC-cc----CCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK---QLSF-QDKAYTVEE-LT-ED----SFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~---~~~~-~~~~~~v~~-~d-~~----~~~~~DvVf~a 108 (279)
+++|.|.||||++|+.|++.|.++++ +++++. |+.... .+.. .+......| ++ .+ .+.++|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~-R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGH---HVRAQV-HSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC---CEEEEE-SCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEE-CCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 46899999999999999999988754 455553 332221 1111 111222234 42 11 24689999977
Q ss_pred CCCc------hhhhhHHHHHhCC-C-EEEEcCCC
Q 023678 109 AGGS------ISKKFGPIAVEKG-S-IVVDNSSA 134 (279)
Q Consensus 109 ~g~~------~s~~~~~~~~~aG-~-~VIDlS~~ 134 (279)
++.. ..+.+++.+.++| + ++|=.|+.
T Consensus 81 a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~ 114 (352)
T 1xgk_A 81 TTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP 114 (352)
T ss_dssp CCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence 6543 2355556666777 5 56656654
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.18 E-value=7.5e-05 Score=71.38 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=59.0
Q ss_pred ecccCC--CCCEEEEECc---CcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceee--eCCceeE-EeecCccCC--C
Q 023678 32 RMSYQE--SAPSVAVVGV---TGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS--FQDKAYT-VEELTEDSF--D 100 (279)
Q Consensus 32 ~~~~~~--~~~kVaIiGA---TG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~--~~~~~~~-v~~~d~~~~--~ 100 (279)
+||..| +++||+|||+ .|.+|+..++.|.++. |.++++++.+++.. .+.+. ++..... +.+++ +.+ .
T Consensus 11 ~~~~~m~m~~irvgiIG~g~~gG~~g~~~~~~l~~~~-~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~-~ll~~~ 88 (438)
T 3btv_A 11 SVSTVPNAAPIRVGFVGLNAAKGWAIKTHYPAILQLS-SQFQITALYSPKIETSIATIQRLKLSNATAFPTLE-SFASSS 88 (438)
T ss_dssp --------CCEEEEEESCCTTSSSTTTTHHHHHHHTT-TTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHH-HHHHCS
T ss_pred ccccccccCCCEEEEEcccCCCChHHHHHHHHHHhcC-CCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHH-HHhcCC
Confidence 345433 4689999998 4999999999987641 67899888765421 11111 1111111 22222 112 3
Q ss_pred CCcEEEecCCCchhhhhHHHHHhCC
Q 023678 101 GVDIALFSAGGSISKKFGPIAVEKG 125 (279)
Q Consensus 101 ~~DvVf~a~g~~~s~~~~~~~~~aG 125 (279)
++|+|+.|+++....+++..++++|
T Consensus 89 ~vD~V~i~tp~~~H~~~~~~al~aG 113 (438)
T 3btv_A 89 TIDMIVIAIQVASHYEVVMPLLEFS 113 (438)
T ss_dssp SCSEEEECSCHHHHHHHHHHHHHHG
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHCC
Confidence 6899999999999999999999999
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00019 Score=69.55 Aligned_cols=102 Identities=17% Similarity=0.090 Sum_probs=66.2
Q ss_pred CCCCCCCCcceeeeecccCCCCCEEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceee--eCCce-eE
Q 023678 18 PANKPRTKPMFTRVRMSYQESAPSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS--FQDKA-YT 90 (279)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~--~~~~~-~~ 90 (279)
-+|--++.+|.+-.. |+++||+|||++ |.+|+..++.|.+.. |.++++++.++... .+... ++... ..
T Consensus 22 ~~~~~~~~~~~~~~~----m~~irvgiIG~g~~GG~~g~~h~~~l~~~~-~~~~lvav~d~~~~~a~~~a~~~g~~~~~~ 96 (479)
T 2nvw_A 22 LANNNKRSKLSTVPS----SRPIRVGFVGLTSGKSWVAKTHFLAIQQLS-SQFQIVALYNPTLKSSLQTIEQLQLKHATG 96 (479)
T ss_dssp CCCCCTTSGGGSSGG----GCCEEEEEECCCSTTSHHHHTHHHHHHHTT-TTEEEEEEECSCHHHHHHHHHHTTCTTCEE
T ss_pred HhhccccccCCCCCC----CCcCEEEEEcccCCCCHHHHHHHHHHHhcC-CCeEEEEEEeCCHHHHHHHHHHcCCCccee
Confidence 344455555544332 456899999973 999999999987631 67899988765421 11111 11111 12
Q ss_pred EeecCccCC--CCCcEEEecCCCchhhhhHHHHHhCC
Q 023678 91 VEELTEDSF--DGVDIALFSAGGSISKKFGPIAVEKG 125 (279)
Q Consensus 91 v~~~d~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG 125 (279)
+.+++ +.+ .++|+|+.|+|+....+++.+++++|
T Consensus 97 ~~d~~-ell~~~~vD~V~I~tp~~~H~~~~~~al~aG 132 (479)
T 2nvw_A 97 FDSLE-SFAQYKDIDMIVVSVKVPEHYEVVKNILEHS 132 (479)
T ss_dssp ESCHH-HHHHCTTCSEEEECSCHHHHHHHHHHHHHHS
T ss_pred eCCHH-HHhcCCCCCEEEEcCCcHHHHHHHHHHHHCC
Confidence 22222 112 36899999999999999999999999
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=59.35 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=42.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeee--CCceeEEe--ecC-cc----CCCCCcEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSF--QDKAYTVE--ELT-ED----SFDGVDIAL 106 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~--~~~~~~v~--~~d-~~----~~~~~DvVf 106 (279)
+.|||.|.||||++|+.|++.|.+++ +..+++.+......+. .+.. ....+.+. |+. .+ .+.++|+||
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g-~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 80 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKH-PDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVV 80 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHC-TTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEE
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhC-CCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEE
Confidence 35789999999999999999998763 2346665532211111 1110 01123332 332 11 135789999
Q ss_pred ecCCCc
Q 023678 107 FSAGGS 112 (279)
Q Consensus 107 ~a~g~~ 112 (279)
.+++..
T Consensus 81 h~A~~~ 86 (336)
T 2hun_A 81 HLAAES 86 (336)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 998753
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00018 Score=65.41 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=54.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCc-cCCCCCcEEEecCCCch-h
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSI-S 114 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~-s 114 (279)
+++||+||| .|++|..+.+.|.+.+| ++... +++.. -..+...+ ..+.. +. +.+.++|+||.|++... .
T Consensus 20 ~m~~I~iIG-~G~mG~~~A~~l~~~G~---~V~~~-dr~~~~~~~l~~~g--~~~~~-~~~~~~~~aDvvi~~vp~~~~~ 91 (310)
T 3doj_A 20 HMMEVGFLG-LGIMGKAMSMNLLKNGF---KVTVW-NRTLSKCDELVEHG--ASVCE-SPAEVIKKCKYTIAMLSDPCAA 91 (310)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSSGGGGHHHHHTT--CEECS-SHHHHHHHCSEEEECCSSHHHH
T ss_pred cCCEEEEEC-ccHHHHHHHHHHHHCCC---eEEEE-eCCHHHHHHHHHCC--CeEcC-CHHHHHHhCCEEEEEcCCHHHH
Confidence 357999999 79999999999998865 44444 33221 11111111 12211 11 22457899999998753 3
Q ss_pred hhhH---H---HHHhCCCEEEEcCCC
Q 023678 115 KKFG---P---IAVEKGSIVVDNSSA 134 (279)
Q Consensus 115 ~~~~---~---~~~~aG~~VIDlS~~ 134 (279)
++.+ . ..+..|..|||.|+.
T Consensus 92 ~~v~~~~~~l~~~l~~g~~vv~~st~ 117 (310)
T 3doj_A 92 LSVVFDKGGVLEQICEGKGYIDMSTV 117 (310)
T ss_dssp HHHHHSTTCGGGGCCTTCEEEECSCC
T ss_pred HHHHhCchhhhhccCCCCEEEECCCC
Confidence 3333 1 224578899999874
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0013 Score=58.37 Aligned_cols=67 Identities=18% Similarity=0.411 Sum_probs=39.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecCc-c---CCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTE-D---SFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d~-~---~~~~~DvVf~a~g~ 111 (279)
|||.|.||||++|+.|++.|.++++ +++.+ ++...+. ............|+.. + .+.+ |+||.+.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~---~V~~~-~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~~ 72 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY---EVVVV-DNLSSGRREFVNPSAELHVRDLKDYSWGAGIKG-DVVFHFAAN 72 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEE-CCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCC-SEEEECCSS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC---EEEEE-eCCCCCchhhcCCCceEEECccccHHHHhhcCC-CEEEECCCC
Confidence 5899999999999999999998854 55555 3332221 1111111122223321 1 2334 999998873
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00016 Score=66.20 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=58.3
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCC-CceEEEEEeecCCCC-c--eeeeCCceeEEeecCccCCCCCcEEEecCCCc
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAG-K--QLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~-p~~~l~~l~s~~s~G-~--~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
|++|||+||| .|.+|..+.+.|.+.++ +..++... .++... + .+...+ +.+.....+...++|+||+|++..
T Consensus 20 ~~~mkI~iIG-~G~mG~ala~~L~~~G~~~~~~V~v~-~r~~~~~~~~~l~~~G--~~~~~~~~e~~~~aDvVilav~~~ 95 (322)
T 2izz_A 20 FQSMSVGFIG-AGQLAFALAKGFTAAGVLAAHKIMAS-SPDMDLATVSALRKMG--VKLTPHNKETVQHSDVLFLAVKPH 95 (322)
T ss_dssp --CCCEEEES-CSHHHHHHHHHHHHTTSSCGGGEEEE-CSCTTSHHHHHHHHHT--CEEESCHHHHHHHCSEEEECSCGG
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCCCcceEEEE-CCCccHHHHHHHHHcC--CEEeCChHHHhccCCEEEEEeCHH
Confidence 3357899999 59999999999988752 11344433 333221 1 111111 223211122345789999999988
Q ss_pred hhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 113 ISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 113 ~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
...+.+..+. ..|..|||+++..
T Consensus 96 ~~~~vl~~l~~~l~~~~ivvs~s~gi 121 (322)
T 2izz_A 96 IIPFILDEIGADIEDRHIVVSCAAGV 121 (322)
T ss_dssp GHHHHHHHHGGGCCTTCEEEECCTTC
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCCC
Confidence 7777776654 3578999998654
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00018 Score=63.41 Aligned_cols=81 Identities=15% Similarity=0.250 Sum_probs=51.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC--ccCCC--CCcEEEecCCCch--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT--EDSFD--GVDIALFSAGGSI-- 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d--~~~~~--~~DvVf~a~g~~~-- 113 (279)
|||.|.||||++|+.|++.|.+++ .+++.+ +|.. + ++.+.+ ...+. ++|+||.+++...
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g---~~V~~~-~r~~-~----------D~~d~~~~~~~~~~~~~d~vi~~a~~~~~~ 70 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEE---YDIYPF-DKKL-L----------DITNISQVQQVVQEIRPHIIIHCAAYTKVD 70 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTT---EEEEEE-CTTT-S----------CTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC---CEEEEe-cccc-c----------CCCCHHHHHHHHHhcCCCEEEECCcccChH
Confidence 489999999999999999998874 455555 3321 1 111111 01122 6899999876432
Q ss_pred ----------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 114 ----------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 114 ----------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
...++..+.+.|+++|=.|+..
T Consensus 71 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~ 108 (287)
T 3sc6_A 71 QAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDY 108 (287)
T ss_dssp HHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchhh
Confidence 2335556667788888676653
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0019 Score=58.25 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=42.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--ee-eCCceeEEeecC-cc----CCC--CCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LS-FQDKAYTVEELT-ED----SFD--GVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~-~~~~~~~v~~~d-~~----~~~--~~DvVf~a 108 (279)
.|+|.|.||||++|+.|++.|.++++ +++.+. |+..+.. .. .........|+. .+ .+. ++|+||.+
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~~~g~---~V~~~~-r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~ 95 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWLPQGH---EILVID-NFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHS 95 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHGGGTC---EEEEEE-CCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEE-CCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEEC
Confidence 47899999999999999999998753 555553 3322211 00 011111122332 11 234 89999999
Q ss_pred CCC
Q 023678 109 AGG 111 (279)
Q Consensus 109 ~g~ 111 (279)
++.
T Consensus 96 A~~ 98 (330)
T 2pzm_A 96 AAA 98 (330)
T ss_dssp CCC
T ss_pred Ccc
Confidence 874
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00048 Score=58.89 Aligned_cols=71 Identities=21% Similarity=0.390 Sum_probs=42.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecC-c----cCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-E----DSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g~ 111 (279)
++++|.|.||||++|+.+++.|.+++ +..+++.+. |+... ..+. ........|+. . ..+.++|+||.+++.
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~-~g~~V~~~~-r~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 79 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGS-DKFVAKGLV-RSAQGKEKIG-GEADVFIGDITDADSINPAFQGIDALVILTSA 79 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTT-TTCEEEEEE-SCHHHHHHTT-CCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcC-CCcEEEEEE-cCCCchhhcC-CCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence 46799999999999999999999872 145666653 32110 0010 01111222332 1 124679999998864
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00016 Score=65.69 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=56.8
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCC
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGG 111 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~ 111 (279)
|+...+++||+||| .|.+|..+.+.|.+.+| ++... +++. .+.-.+......... +. +.+.++|+||.|++.
T Consensus 3 m~~~~~~~~IgiIG-~G~mG~~~A~~l~~~G~---~V~~~-dr~~-~~~~~~~~~g~~~~~-~~~e~~~~aDvVi~~vp~ 75 (306)
T 3l6d_A 3 LSDESFEFDVSVIG-LGAMGTIMAQVLLKQGK---RVAIW-NRSP-GKAAALVAAGAHLCE-SVKAALSASPATIFVLLD 75 (306)
T ss_dssp CCCCCCSCSEEEEC-CSHHHHHHHHHHHHTTC---CEEEE-CSSH-HHHHHHHHHTCEECS-SHHHHHHHSSEEEECCSS
T ss_pred CCcccCCCeEEEEC-CCHHHHHHHHHHHHCCC---EEEEE-eCCH-HHHHHHHHCCCeecC-CHHHHHhcCCEEEEEeCC
Confidence 44444467999999 79999999999998876 33333 3321 110000000111211 11 224578999999997
Q ss_pred ch-hhhhHH----HHHhCCCEEEEcCCCC
Q 023678 112 SI-SKKFGP----IAVEKGSIVVDNSSAF 135 (279)
Q Consensus 112 ~~-s~~~~~----~~~~aG~~VIDlS~~~ 135 (279)
.. .++... .....|..|||.|+..
T Consensus 76 ~~~~~~v~~~~~l~~~~~g~ivid~st~~ 104 (306)
T 3l6d_A 76 NHATHEVLGMPGVARALAHRTIVDYTTNA 104 (306)
T ss_dssp HHHHHHHHTSTTHHHHTTTCEEEECCCCC
T ss_pred HHHHHHHhcccchhhccCCCEEEECCCCC
Confidence 64 333221 2246789999998753
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00028 Score=62.28 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=51.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-ccC----CCC-CcEEEecCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDS----FDG-VDIALFSAG 110 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~~----~~~-~DvVf~a~g 110 (279)
|+++||.|.| +|++|+.|++.|.++++ +++.+. |+... +. .+......|+. .+. +.+ +|+||.+++
T Consensus 1 M~~~~ilVtG-aG~iG~~l~~~L~~~g~---~V~~~~-r~~~~--~~-~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 1 MSLSKILIAG-CGDLGLELARRLTAQGH---EVTGLR-RSAQP--MP-AGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp -CCCCEEEEC-CSHHHHHHHHHHHHTTC---CEEEEE-CTTSC--CC-TTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHHCCC---EEEEEe-CCccc--cc-cCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 4467999999 59999999999998865 455553 33221 11 11122222332 222 334 999999875
Q ss_pred Cc-------------hhhhhHHHHHhCCC-EEEEcCCC
Q 023678 111 GS-------------ISKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 111 ~~-------------~s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
.. .+..+++.+.+.|+ ++|=.|+.
T Consensus 73 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~ 110 (286)
T 3gpi_A 73 ASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSST 110 (286)
T ss_dssp HHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEccc
Confidence 32 13344444455665 56655554
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0016 Score=58.17 Aligned_cols=93 Identities=16% Similarity=0.231 Sum_probs=52.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC-CceeEEeecC-cc----CCC--CCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-DKAYTVEELT-ED----SFD--GVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~-~~~~~v~~~d-~~----~~~--~~DvVf~a~g 110 (279)
|++|.|.||||++|+.|++.|.++++ +++.+. +......-... .......|+. .+ .+. ++|+||.+++
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~-r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~ 76 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGL---SVVVVD-NLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAA 76 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE-CCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC---EEEEEe-CCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCc
Confidence 46899999999999999999998754 555553 33222110011 1111122332 11 133 7999999987
Q ss_pred Cch------------------hhhhHHHHHhCCC-EEEEcCCCC
Q 023678 111 GSI------------------SKKFGPIAVEKGS-IVVDNSSAF 135 (279)
Q Consensus 111 ~~~------------------s~~~~~~~~~aG~-~VIDlS~~~ 135 (279)
... +..+++.+.+.|+ ++|=.|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~ 120 (330)
T 2c20_A 77 DSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAA 120 (330)
T ss_dssp CCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred ccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCce
Confidence 532 1223344456675 566666643
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0014 Score=53.08 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=56.4
Q ss_pred CCEEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccC-CCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~-~~~~DvVf~a~g~~~s 114 (279)
..+|+|||+| |..|..+++.|.+.+| ++..+. ++ ++.+ .+ ..+.+ +..+ ...+|+|+.|++....
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~---~V~~vn-p~--~~~i--~G--~~~~~-s~~el~~~vDlvii~vp~~~v 82 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGF---EVLPVN-PN--YDEI--EG--LKCYR-SVRELPKDVDVIVFVVPPKVG 82 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEEC-TT--CSEE--TT--EECBS-SGGGSCTTCCEEEECSCHHHH
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCC---EEEEeC-CC--CCeE--CC--eeecC-CHHHhCCCCCEEEEEeCHHHH
Confidence 4689999987 9999999999998866 444442 22 2222 12 22221 1222 2468999999999888
Q ss_pred hhhHHHHHhCCCE--EEEcC
Q 023678 115 KKFGPIAVEKGSI--VVDNS 132 (279)
Q Consensus 115 ~~~~~~~~~aG~~--VIDlS 132 (279)
.+.+..+.++|++ |++.+
T Consensus 83 ~~v~~~~~~~g~~~i~~~~~ 102 (138)
T 1y81_A 83 LQVAKEAVEAGFKKLWFQPG 102 (138)
T ss_dssp HHHHHHHHHTTCCEEEECTT
T ss_pred HHHHHHHHHcCCCEEEEcCc
Confidence 8999888888874 55443
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00076 Score=61.57 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=61.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEee-cCccCCC--C-CcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSFD--G-VDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~-~d~~~~~--~-~DvVf~a~g~~~s 114 (279)
..+|+|+||||..|+.+++.|.+.+| +++....++..|+.+ . .+.+.+ ++ +... + +|+++.++++..+
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g~---~~v~~VnP~~~g~~i--~--G~~vy~sl~-el~~~~~~~DvaIi~vp~~~~ 84 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYGT---KVVAGVTPGKGGSEV--H--GVPVYDSVK-EALAEHPEINTSIVFVPAPFA 84 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEECTTCTTCEE--T--TEEEESSHH-HHHHHCTTCCEEEECCCGGGH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCC---cEEEEeCCCCCCceE--C--CEeeeCCHH-HHhhcCCCCCEEEEecCHHHH
Confidence 46899999999999999999988643 344333444334332 1 233332 21 1112 3 8999999999999
Q ss_pred hhhHHHHHhCCCE-EEEcCCCC
Q 023678 115 KKFGPIAVEKGSI-VVDNSSAF 135 (279)
Q Consensus 115 ~~~~~~~~~aG~~-VIDlS~~~ 135 (279)
.+.+.++.++|++ +|=.+..|
T Consensus 85 ~~~v~ea~~~Gi~~vVi~t~G~ 106 (297)
T 2yv2_A 85 PDAVYEAVDAGIRLVVVITEGI 106 (297)
T ss_dssp HHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHHCCCCEEEEECCCC
Confidence 9999999999998 66567666
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0019 Score=58.26 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=53.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEe--ecC-cc----CCCC--CcEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVE--ELT-ED----SFDG--VDIALF 107 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~--~~d-~~----~~~~--~DvVf~ 107 (279)
+++|.|.||||++|+.|++.|.++++ +++.+. |+..+. .+... ..+.+. |+. .+ .+.+ +|+||.
T Consensus 21 ~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~-r~~~~~~~~l~~~-~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih 95 (333)
T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLERGD---KVVGID-NFATGRREHLKDH-PNLTFVEGSIADHALVNQLIGDLQPDAVVH 95 (333)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE-CCSSCCGGGSCCC-TTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEE-CCCccchhhHhhc-CCceEEEEeCCCHHHHHHHHhccCCcEEEE
Confidence 46899999999999999999998753 555553 432221 11100 122222 332 11 1334 999999
Q ss_pred cCCCch---------------hhhhHHHHHhCCC-EEEEcCCC
Q 023678 108 SAGGSI---------------SKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 108 a~g~~~---------------s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
+++... +..+++.+.+.|+ ++|=.|+.
T Consensus 96 ~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~ 138 (333)
T 2q1w_A 96 TAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTA 138 (333)
T ss_dssp CCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred CceecCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECcH
Confidence 987432 1234455566776 66655553
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00086 Score=60.95 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=62.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEee-cCccCCC--CCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSFD--GVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~-~d~~~~~--~~DvVf~a~g~~~s~ 115 (279)
.+||+|+|+||..|+.+++.+.++++ ++++...++..|+.+ . .+.+.+ ++ +... ++|+++.+++...+.
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~---~~v~~VnP~~~g~~i--~--G~~vy~sl~-el~~~~~~Dv~Ii~vp~~~~~ 78 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGT---KIVAGVTPGKGGMEV--L--GVPVYDTVK-EAVAHHEVDASIIFVPAPAAA 78 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEECTTCTTCEE--T--TEEEESSHH-HHHHHSCCSEEEECCCHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCC---eEEEEECCCCCCceE--C--CEEeeCCHH-HHhhcCCCCEEEEecCHHHHH
Confidence 47999999999999999999887643 444333443333321 1 133332 21 1112 689999999999999
Q ss_pred hhHHHHHhCCCE-EEEcCCCC
Q 023678 116 KFGPIAVEKGSI-VVDNSSAF 135 (279)
Q Consensus 116 ~~~~~~~~aG~~-VIDlS~~~ 135 (279)
+.+.++.++|++ +|=.+..|
T Consensus 79 ~~~~ea~~~Gi~~vVi~t~G~ 99 (288)
T 1oi7_A 79 DAALEAAHAGIPLIVLITEGI 99 (288)
T ss_dssp HHHHHHHHTTCSEEEECCSCC
T ss_pred HHHHHHHHCCCCEEEEECCCC
Confidence 999999999997 56566665
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00025 Score=65.33 Aligned_cols=71 Identities=23% Similarity=0.387 Sum_probs=46.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcC-CCCceEEEEEeecC-CCCceeeeCCc--eeEEee----cCccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKR-SAGKQLSFQDK--AYTVEE----LTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~-~~p~~~l~~l~s~~-s~G~~~~~~~~--~~~v~~----~d~~~~~~~DvVf~a~g~ 111 (279)
|||+|+||+|+||..++.+|..+ +++ .+++++...+ ..|......+. ...+.. -+.+++.++|+|+++.|.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~-~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~ 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSG-SELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT-EEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCC-ceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence 68999999999999999998765 443 5777775432 22332222221 223432 123467899999999864
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0013 Score=58.91 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=28.1
Q ss_pred cCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 35 YQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 35 ~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.++|.|.||||++|+.|++.|.++++ +++.+
T Consensus 7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~ 41 (342)
T 1y1p_A 7 VLPEGSLVLVTGANGFVASHVVEQLLEHGY---KVRGT 41 (342)
T ss_dssp SSCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred cCCCCCEEEEECCccHHHHHHHHHHHHCCC---EEEEE
Confidence 334567999999999999999999998754 55555
|
| >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0011 Score=62.43 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=61.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee----eCCceeEEeecC-c---------------c
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS----FQDKAYTVEELT-E---------------D 97 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~----~~~~~~~v~~~d-~---------------~ 97 (279)
++.||+|+|+||-+|..-++.+.++ +.+++++++..++..+... |.-+-+.+.+-+ . +
T Consensus 2 ~~k~i~ILGsTGSIG~~tldVi~~~--~~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~e 79 (376)
T 3a06_A 2 EERTLVILGATGSIGTQTLDVLKKV--KGIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEE 79 (376)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHS--CSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHH
T ss_pred CcceEEEECCCCHHHHHHHHHHHhC--CCeEEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHH
Confidence 3468999999999999999999887 8899998865443322111 111112222211 0 1
Q ss_pred C--CCCCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 98 S--FDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 98 ~--~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
. ..++|+|+.|.......+..-.++++|..|.
T Consensus 80 l~~~~~~D~Vv~AivG~aGL~ptlaAi~aGK~va 113 (376)
T 3a06_A 80 MLEALKPDITMVAVSGFSGLRAVLASLEHSKRVC 113 (376)
T ss_dssp HHHHHCCSEEEECCCSTTHHHHHHHHHHHCSEEE
T ss_pred HhcCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEE
Confidence 1 1368999999998888888888889999887
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00056 Score=60.98 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=47.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-c-cCCC--CCcEEEecCCCch--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-E-DSFD--GVDIALFSAGGSI-- 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~-~~~~--~~DvVf~a~g~~~-- 113 (279)
++|.|.||||++|+.|++.|.++++ +++.+..++..+. ....++.+.+ . ..+. ++|+||.|++...
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~-----~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~ 74 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNW---HAVGCGFRRARPK-----FEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPD 74 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC---EEEEEC-----------------------CHHHHHHHCCSEEEECC------
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCC---eEEEEccCCCCCC-----eEEecCCCHHHHHHHHHhhCCCEEEECCcccChh
Confidence 6899999999999999999998753 5555532111110 0111222211 1 1122 4899999886421
Q ss_pred ----------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 114 ----------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 114 ----------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
+..++..+.+.|.++|=.|+..
T Consensus 75 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~ 112 (315)
T 2ydy_A 75 VVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDY 112 (315)
T ss_dssp -------------CHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHH
Confidence 2334455556677877666543
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0006 Score=66.08 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=57.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEE--eecC-c----cCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTV--EELT-E----DSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v--~~~d-~----~~~~~~DvVf~a~g 110 (279)
+++|.|+|| |.+|+.+++.|.++ +..++.++ +|+.. .+.+... ..... .+++ . +.+.++|+|+.|+|
T Consensus 23 ~k~VlIiGA-GgiG~aia~~L~~~--~g~~V~v~-~R~~~ka~~la~~-~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp 97 (467)
T 2axq_A 23 GKNVLLLGS-GFVAQPVIDTLAAN--DDINVTVA-CRTLANAQALAKP-SGSKAISLDVTDDSALDKVLADNDVVISLIP 97 (467)
T ss_dssp CEEEEEECC-STTHHHHHHHHHTS--TTEEEEEE-ESSHHHHHHHHGG-GTCEEEECCTTCHHHHHHHHHTSSEEEECSC
T ss_pred CCEEEEECC-hHHHHHHHHHHHhC--CCCeEEEE-ECCHHHHHHHHHh-cCCcEEEEecCCHHHHHHHHcCCCEEEECCc
Confidence 468999997 99999999999987 55665444 44321 1111111 11121 1221 1 12357999999999
Q ss_pred CchhhhhHHHHHhCCCEEEEcC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS 132 (279)
......+...++++|..++|.+
T Consensus 98 ~~~~~~v~~a~l~~g~~vvd~~ 119 (467)
T 2axq_A 98 YTFHPNVVKSAIRTKTDVVTSS 119 (467)
T ss_dssp GGGHHHHHHHHHHHTCEEEECS
T ss_pred hhhhHHHHHHHHhcCCEEEEee
Confidence 8866666777788899999875
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0014 Score=59.41 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=27.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
++++|.|.||||++|+.|++.|.++++ +++.+.
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~ 58 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLDQ---KVVGLD 58 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCCC---EEEEEe
Confidence 357999999999999999999998754 555553
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00031 Score=65.07 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=58.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC------CCceEEEEEeecCCCCc-eee----eC--CceeEEe-ecCccC-C--CC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD------FPYRSIKMLASKRSAGK-QLS----FQ--DKAYTVE-ELTEDS-F--DG 101 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~------~p~~~l~~l~s~~s~G~-~~~----~~--~~~~~v~-~~d~~~-~--~~ 101 (279)
|+||+|+| .|.||+.+++.|.++. -+.++++.+++++..-. .+. +. .....+. ..+.++ + .+
T Consensus 2 mirvgIiG-~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~ 80 (327)
T 3do5_A 2 MIKIAIVG-FGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSAD 80 (327)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSC
T ss_pred cEEEEEEe-ccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCC
Confidence 58999999 8999999999997641 05788998876542110 000 00 0000111 112111 1 36
Q ss_pred CcEEEecCCCchh----hhhHHHHHhCCCEEEE
Q 023678 102 VDIALFSAGGSIS----KKFGPIAVEKGSIVVD 130 (279)
Q Consensus 102 ~DvVf~a~g~~~s----~~~~~~~~~aG~~VID 130 (279)
+|+|+.|+++... .++...++++|+.||-
T Consensus 81 iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~ 113 (327)
T 3do5_A 81 YDVLIEASVTRVDGGEGVNYIREALKRGKHVVT 113 (327)
T ss_dssp CSEEEECCCCC----CHHHHHHHHHTTTCEEEE
T ss_pred CCEEEECCCCcccchhHHHHHHHHHHCCCeEEe
Confidence 8999999987753 7889999999999884
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0018 Score=56.33 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=63.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceeeeCCceeEEeecC-c-cCC-CCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSFQDKAYTVEELT-E-DSF-DGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~~~~~~~~v~~~d-~-~~~-~~~DvVf~a~g~~~ 113 (279)
.+||+|+| .|.+|+.+++.+..+ . .++++.+.+.+ ..|+.+. + +.+...+ . +.+ .++|+|+.|+|+..
T Consensus 80 ~~rV~IIG-aG~~G~~la~~~~~~-~-g~~iVg~~D~dp~k~g~~i~--g--v~V~~~~dl~ell~~~ID~ViIA~Ps~~ 152 (211)
T 2dt5_A 80 KWGLCIVG-MGRLGSALADYPGFG-E-SFELRGFFDVDPEKVGRPVR--G--GVIEHVDLLPQRVPGRIEIALLTVPREA 152 (211)
T ss_dssp CEEEEEEC-CSHHHHHHHHCSCCC-S-SEEEEEEEESCTTTTTCEET--T--EEEEEGGGHHHHSTTTCCEEEECSCHHH
T ss_pred CCEEEEEC-ccHHHHHHHHhHhhc-C-CcEEEEEEeCCHHHHhhhhc--C--CeeecHHhHHHHHHcCCCEEEEeCCchh
Confidence 47899999 599999999975444 3 78888887643 3344321 2 3333322 1 112 27999999999999
Q ss_pred hhhhHHHHHhCCCEEEEcCCCCCC
Q 023678 114 SKKFGPIAVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 114 s~~~~~~~~~aG~~VIDlS~~~R~ 137 (279)
..+++..+.++|+++|=+-.+.++
T Consensus 153 ~~ei~~~l~~aGi~~Ilnf~P~~l 176 (211)
T 2dt5_A 153 AQKAADLLVAAGIKGILNFAPVVL 176 (211)
T ss_dssp HHHHHHHHHHHTCCEEEECSSSCC
T ss_pred HHHHHHHHHHcCCCEEEECCcccc
Confidence 899999999999986644444444
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00059 Score=65.60 Aligned_cols=120 Identities=14% Similarity=0.223 Sum_probs=53.9
Q ss_pred ccccchhhhhccCCCCCCCCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-------
Q 023678 5 SSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------- 77 (279)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s------- 77 (279)
|||....| -|.|-...-...-|-....|.+.+++|||+||| +||+|..+...|.+ +| ++..+ .++.
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~mkIaVIG-lG~mG~~lA~~La~-G~---~V~~~-D~~~~~v~~l~ 75 (432)
T 3pid_A 3 SSHHHHHH-SSGLVPRGSHMASMTGGQQMGRGSEFMKITISG-TGYVGLSNGVLIAQ-NH---EVVAL-DIVQAKVDMLN 75 (432)
T ss_dssp ---------------------------------CCCEEEEEC-CSHHHHHHHHHHHT-TS---EEEEE-CSCHHHHHHHH
T ss_pred Cccccccc-cCCcccccchhhhccCCcccccccCCCEEEEEC-cCHHHHHHHHHHHc-CC---eEEEE-ecCHHHhhHHh
Confidence 45554433 344432223334455567788877889999999 69999999999886 65 44444 2221
Q ss_pred CCc-eeeeCC---------ceeEEeecCc-cCCCCCcEEEecCCCchh---------------hhhHHHHHhCCCEEEEc
Q 023678 78 AGK-QLSFQD---------KAYTVEELTE-DSFDGVDIALFSAGGSIS---------------KKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 78 ~G~-~~~~~~---------~~~~v~~~d~-~~~~~~DvVf~a~g~~~s---------------~~~~~~~~~aG~~VIDl 131 (279)
.|. ++...+ ..+.+. .+. +.+.++|+||.|+|+... +.+++ +..|..|||.
T Consensus 76 ~g~~~i~e~~l~~ll~~~~~~l~~t-td~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~--l~~g~iVV~~ 152 (432)
T 3pid_A 76 QKISPIVDKEIQEYLAEKPLNFRAT-TDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE--INPNAVMIIK 152 (432)
T ss_dssp TTCCSSCCHHHHHHHHHSCCCEEEE-SCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH--HCTTSEEEEC
T ss_pred ccCCccccccHHHHHhhccCCeEEE-cCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh--cCCCcEEEEe
Confidence 111 000000 012222 122 345789999999998631 22222 5689999998
Q ss_pred CCC
Q 023678 132 SSA 134 (279)
Q Consensus 132 S~~ 134 (279)
|.-
T Consensus 153 STv 155 (432)
T 3pid_A 153 STI 155 (432)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0019 Score=59.19 Aligned_cols=99 Identities=17% Similarity=0.271 Sum_probs=58.0
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcC-CCCceEEEEEeecCCCCc-eee--eCCceeEE--eecC-c----cCCCCCcEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGK-QLS--FQDKAYTV--EELT-E----DSFDGVDIA 105 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~-~~p~~~l~~l~s~~s~G~-~~~--~~~~~~~v--~~~d-~----~~~~~~DvV 105 (279)
++.++|.|.||||++|+.|++.|.++ ++ .+++.+ +|+.... .+. .....+.+ .|+. . ..+.++|+|
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~--~~V~~~-~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 95 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNA--KKIIVY-SRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDIC 95 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCC--SEEEEE-ESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEE
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCC--CEEEEE-ECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEE
Confidence 34579999999999999999999876 42 255555 3432110 000 01112222 2332 1 235689999
Q ss_pred EecCCCch------------------hhhhHHHHHhCCC-EEEEcCCCCCCC
Q 023678 106 LFSAGGSI------------------SKKFGPIAVEKGS-IVVDNSSAFRMV 138 (279)
Q Consensus 106 f~a~g~~~------------------s~~~~~~~~~aG~-~VIDlS~~~R~~ 138 (279)
|.+++... +..++..+.+.|+ ++|=.|++.-..
T Consensus 96 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~~ 147 (344)
T 2gn4_A 96 IHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAAN 147 (344)
T ss_dssp EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSS
T ss_pred EECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccCC
Confidence 99987532 1234455566776 677788764433
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0002 Score=63.87 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=52.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchh-h
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSIS-K 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s-~ 115 (279)
++|||+||| .|.+|+.+.+.|.+.+| ++..+. +...-..+...+ +.+.. +. +.+.++|+||.|++.... .
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~---~V~~~~-~~~~~~~~~~~g--~~~~~-~~~~~~~~~D~vi~~vp~~~~~~ 73 (295)
T 1yb4_A 2 NAMKLGFIG-LGIMGSPMAINLARAGH---QLHVTT-IGPVADELLSLG--AVNVE-TARQVTEFADIIFIMVPDTPQVE 73 (295)
T ss_dssp --CEEEECC-CSTTHHHHHHHHHHTTC---EEEECC-SSCCCHHHHTTT--CBCCS-SHHHHHHTCSEEEECCSSHHHHH
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCC---EEEEEc-CHHHHHHHHHcC--CcccC-CHHHHHhcCCEEEEECCCHHHHH
Confidence 347999999 69999999999988754 444443 221111111111 11111 11 224578999999987763 3
Q ss_pred hhHH---H---HHhCCCEEEEcCCC
Q 023678 116 KFGP---I---AVEKGSIVVDNSSA 134 (279)
Q Consensus 116 ~~~~---~---~~~aG~~VIDlS~~ 134 (279)
+... . .+..|..|||.++.
T Consensus 74 ~v~~~~~~l~~~l~~~~~vv~~s~~ 98 (295)
T 1yb4_A 74 DVLFGEHGCAKTSLQGKTIVDMSSI 98 (295)
T ss_dssp HHHHSTTSSTTSCCTTEEEEECSCC
T ss_pred HHHhCchhHhhcCCCCCEEEECCCC
Confidence 3332 1 23568889998875
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00062 Score=59.64 Aligned_cols=89 Identities=7% Similarity=0.104 Sum_probs=53.7
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCC-CceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~-p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s 114 (279)
|++|||+||| .|.+|+.+.+.|.+.++ +..++..+ +++. .+ . + +.+.. +. +...++|+||.|++....
T Consensus 2 m~~m~i~iiG-~G~mG~~~a~~l~~~g~~~~~~v~~~-~~~~-~~---~-g--~~~~~-~~~~~~~~~D~vi~~v~~~~~ 71 (262)
T 2rcy_A 2 MENIKLGFMG-LGQMGSALAHGIANANIIKKENLFYY-GPSK-KN---T-T--LNYMS-SNEELARHCDIIVCAVKPDIA 71 (262)
T ss_dssp CSSSCEEEEC-CSHHHHHHHHHHHHHTSSCGGGEEEE-CSSC-CS---S-S--SEECS-CHHHHHHHCSEEEECSCTTTH
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHCCCCCCCeEEEE-eCCc-cc---C-c--eEEeC-CHHHHHhcCCEEEEEeCHHHH
Confidence 4567999999 59999999999987752 11344433 3332 11 1 1 22211 11 224578999999998877
Q ss_pred hhhHHHHHh--CCCEEEEcCCCC
Q 023678 115 KKFGPIAVE--KGSIVVDNSSAF 135 (279)
Q Consensus 115 ~~~~~~~~~--aG~~VIDlS~~~ 135 (279)
.+.+..+.. .+..||..++..
T Consensus 72 ~~v~~~l~~~l~~~~vv~~~~gi 94 (262)
T 2rcy_A 72 GSVLNNIKPYLSSKLLISICGGL 94 (262)
T ss_dssp HHHHHHSGGGCTTCEEEECCSSC
T ss_pred HHHHHHHHHhcCCCEEEEECCCC
Confidence 776665432 344555555544
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00041 Score=62.02 Aligned_cols=87 Identities=13% Similarity=0.213 Sum_probs=53.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCc-cCCCCCcEEEecCCCc-hhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGS-ISKK 116 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~-~s~~ 116 (279)
+||+||| .|.+|..+.+.|.+++| ++... +++.. -..+... .+...+ +. +...++|+||.|++.. ..++
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G~---~V~~~-dr~~~~~~~~~~~--g~~~~~-~~~~~~~~aDvvi~~vp~~~~~~~ 73 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAGC---SVTIW-NRSPEKAEELAAL--GAERAA-TPCEVVESCPVTFAMLADPAAAEE 73 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSSGGGGHHHHHT--TCEECS-SHHHHHHHCSEEEECCSSHHHHHH
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCC---eEEEE-cCCHHHHHHHHHC--CCeecC-CHHHHHhcCCEEEEEcCCHHHHHH
Confidence 6899999 69999999999998865 44433 33221 1111111 122211 11 2245789999999964 3333
Q ss_pred hH---H---HHHhCCCEEEEcCCC
Q 023678 117 FG---P---IAVEKGSIVVDNSSA 134 (279)
Q Consensus 117 ~~---~---~~~~aG~~VIDlS~~ 134 (279)
.. . .++..|..|||.|+.
T Consensus 74 v~~~~~~l~~~l~~~~~vi~~st~ 97 (287)
T 3pef_A 74 VCFGKHGVLEGIGEGRGYVDMSTV 97 (287)
T ss_dssp HHHSTTCHHHHCCTTCEEEECSCC
T ss_pred HHcCcchHhhcCCCCCEEEeCCCC
Confidence 33 2 334688999999874
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0019 Score=52.27 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=47.3
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeec-Cc-----cCCCCCcEE
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEEL-TE-----DSFDGVDIA 105 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~-d~-----~~~~~~DvV 105 (279)
|+.....++|.|+|+ |.+|+.+++.|.+.++ +++++......-..+. ..+......+. +. ..+.++|+|
T Consensus 13 ~~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~---~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGC-GRLGSLIANLASSSGH---SVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp ----CCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEE
T ss_pred hhcccCCCcEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEE
Confidence 445455679999995 9999999999988754 5555532211111111 11111111121 11 124578999
Q ss_pred EecCCCchhhhhHHHHH
Q 023678 106 LFSAGGSISKKFGPIAV 122 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~~ 122 (279)
|.|++.......+..++
T Consensus 89 i~~~~~~~~~~~~~~~~ 105 (155)
T 2g1u_A 89 FAFTNDDSTNFFISMNA 105 (155)
T ss_dssp EECSSCHHHHHHHHHHH
T ss_pred EEEeCCcHHHHHHHHHH
Confidence 99999876555544443
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00024 Score=65.11 Aligned_cols=85 Identities=16% Similarity=0.046 Sum_probs=57.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cceeee----CCceeEE-eecCccCC--CCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSF----QDKAYTV-EELTEDSF--DGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~~~~~----~~~~~~v-~~~d~~~~--~~~DvVf~a~ 109 (279)
++||+|||+ |.+|+..++.| + |.++++++.+++.. .+.... .+....+ .+++ +.+ .++|+|+.|+
T Consensus 2 ~~rvgiiG~-G~~~~~~~~~l--~--~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~~vD~V~I~t 75 (337)
T 3ip3_A 2 SLKICVIGS-SGHFRYALEGL--D--EECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWW-EMLEKEKPDILVINT 75 (337)
T ss_dssp CEEEEEECS-SSCHHHHHTTC--C--TTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHH-HHHHHHCCSEEEECS
T ss_pred ceEEEEEcc-chhHHHHHHhc--C--CCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHH-HHhcCCCCCEEEEeC
Confidence 589999996 55555777776 4 89999999876531 111111 0111122 2221 112 3689999999
Q ss_pred CCchhhhhHHHHHhCCCEEE
Q 023678 110 GGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VI 129 (279)
|+....+++.+++++|+.|+
T Consensus 76 p~~~H~~~~~~al~aGkhVl 95 (337)
T 3ip3_A 76 VFSLNGKILLEALERKIHAF 95 (337)
T ss_dssp SHHHHHHHHHHHHHTTCEEE
T ss_pred CcchHHHHHHHHHHCCCcEE
Confidence 99999999999999999887
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00013 Score=64.09 Aligned_cols=91 Identities=12% Similarity=0.235 Sum_probs=54.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~ 115 (279)
++|||+||| .|.+|+.+.+.|.+.+ .++ .+.+++..- +.+... ..+.+. .+. +.+.++|+||.|++.....
T Consensus 2 ~~m~i~iiG-~G~mG~~~a~~l~~~g---~~v-~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~D~Vi~~v~~~~~~ 74 (259)
T 2ahr_A 2 NAMKIGIIG-VGKMASAIIKGLKQTP---HEL-IISGSSLERSKEIAEQ-LALPYA-MSHQDLIDQVDLVILGIKPQLFE 74 (259)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHTTSS---CEE-EEECSSHHHHHHHHHH-HTCCBC-SSHHHHHHTCSEEEECSCGGGHH
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhCC---CeE-EEECCCHHHHHHHHHH-cCCEee-CCHHHHHhcCCEEEEEeCcHhHH
Confidence 357999999 7999999999998774 243 343432110 011100 011111 111 2235799999999976655
Q ss_pred hhHHHHHhCCCEEEEcCCCCC
Q 023678 116 KFGPIAVEKGSIVVDNSSAFR 136 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R 136 (279)
+....+ +.|..+||.++...
T Consensus 75 ~v~~~l-~~~~~vv~~~~~~~ 94 (259)
T 2ahr_A 75 TVLKPL-HFKQPIISMAAGIS 94 (259)
T ss_dssp HHHTTS-CCCSCEEECCTTCC
T ss_pred HHHHHh-ccCCEEEEeCCCCC
Confidence 555443 47888999876543
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0028 Score=56.88 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=26.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+++|.|.||||++|+.|++.|.++++ +++.+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~G~---~V~~~ 35 (341)
T 3enk_A 5 KGTILVTGGAGYIGSHTAVELLAHGY---DVVIA 35 (341)
T ss_dssp SCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CcEEEEecCCcHHHHHHHHHHHHCCC---cEEEE
Confidence 37999999999999999999998754 45555
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.006 Score=54.71 Aligned_cols=93 Identities=26% Similarity=0.314 Sum_probs=53.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcC-CCCc---eEEEEEeecCCCCc--eeee--CCceeEEe--ecC-c----cCCCCCcE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDR-DFPY---RSIKMLASKRSAGK--QLSF--QDKAYTVE--ELT-E----DSFDGVDI 104 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~-~~p~---~~l~~l~s~~s~G~--~~~~--~~~~~~v~--~~d-~----~~~~~~Dv 104 (279)
|||.|.||||++|+.|++.|.++ + +. .+++.+......+. .+.. ....+.+. |+. . ..+.++|+
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~-~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 79 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAY-PDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDA 79 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSC-TTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCE
T ss_pred CeEEEECCccHHHHHHHHHHHhhhc-CCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCE
Confidence 58999999999999999999874 2 23 56666642211111 1110 01123332 332 1 12468999
Q ss_pred EEecCCCch------------------hhhhHHHHHhCCC-EEEEcCC
Q 023678 105 ALFSAGGSI------------------SKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 105 Vf~a~g~~~------------------s~~~~~~~~~aG~-~VIDlS~ 133 (279)
||.+++... +..+++.+.+.|+ ++|=.|+
T Consensus 80 Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS 127 (337)
T 1r6d_A 80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVST 127 (337)
T ss_dssp EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 999987432 1233445556776 6665555
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00086 Score=62.82 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=57.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCceeeeC--Ccee--EEe----ec-----Ccc------
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQ--DKAY--TVE----EL-----TED------ 97 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~~~~~~--~~~~--~v~----~~-----d~~------ 97 (279)
+++||+|+| .|.||+.+++.|.++. -..++++.+++++. ..+... +.+. .+. +. +.+
T Consensus 3 k~i~vgIiG-~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~ 79 (358)
T 1ebf_A 3 KVVNVAVIG-AGVVGSAFLDQLLAMKSTITYNLVLLAEAER--SLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHL 79 (358)
T ss_dssp SEEEEEEEC-CSHHHHHHHHHHHHCCCSSEEEEEEEECSSB--EEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHH
T ss_pred ceEEEEEEe-cCHHHHHHHHHHHhcCCCCCEEEEEEEECCh--hhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHh
Confidence 458999999 7999999999998862 12678888876432 111111 1110 000 00 110
Q ss_pred -CCCCCcEEEecCCCchhhhhHHHHHhCCCEEEE
Q 023678 98 -SFDGVDIALFSAGGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 98 -~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VID 130 (279)
.....|+|+.|+|+....+...+++++|+.||-
T Consensus 80 ~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVt 113 (358)
T 1ebf_A 80 KTSPKPVILVDNTSSAYIAGFYTKFVENGISIAT 113 (358)
T ss_dssp TTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEEC
T ss_pred hhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEe
Confidence 001238999999988666666789999999983
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00017 Score=57.97 Aligned_cols=94 Identities=11% Similarity=0.169 Sum_probs=55.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecC--ccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~~s~ 115 (279)
..+|+|+|+ |.+|+.+++.|.+++ .+ +.+.+++... +.+... ....+...+ .+.+.++|+||.|+|.....
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g---~~-v~v~~r~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~Divi~at~~~~~~ 94 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQ---YK-VTVAGRNIDHVRAFAEK-YEYEYVLINDIDSLIKNNDVIITATSSKTPI 94 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTT---CE-EEEEESCHHHHHHHHHH-HTCEEEECSCHHHHHHTCSEEEECSCCSSCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC---CE-EEEEcCCHHHHHHHHHH-hCCceEeecCHHHHhcCCCEEEEeCCCCCcE
Confidence 479999995 999999999987753 45 4444443211 111100 012222222 12246799999999976332
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCC
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVE 139 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~ 139 (279)
. ....++.|..|+|++-+.-.++
T Consensus 95 ~-~~~~l~~g~~vid~~~p~~~~~ 117 (144)
T 3oj0_A 95 V-EERSLMPGKLFIDLGNPPNIER 117 (144)
T ss_dssp B-CGGGCCTTCEEEECCSSCSBCC
T ss_pred e-eHHHcCCCCEEEEccCCccCCC
Confidence 1 2244567999999986543343
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00014 Score=68.36 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=60.1
Q ss_pred CCCCEEEEECcCcH---HHHHHHHHHHcCCCCceEEEE-EeecCCC-Cceee--eCCce-eEEeecCccCC-------CC
Q 023678 37 ESAPSVAVVGVTGA---VGQEFLSVLSDRDFPYRSIKM-LASKRSA-GKQLS--FQDKA-YTVEELTEDSF-------DG 101 (279)
Q Consensus 37 ~~~~kVaIiGATG~---VG~eLl~lL~~~~~p~~~l~~-l~s~~s~-G~~~~--~~~~~-~~v~~~d~~~~-------~~ 101 (279)
|+++||+||| .|. +|+..++.+... +.+++++ +.+++.. .+... ++... -.+.+++ +.+ .+
T Consensus 10 m~~~rvgiiG-~G~~~~ig~~h~~~~~~~--~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~-~ll~~~~~~~~~ 85 (398)
T 3dty_A 10 PQPIRWAMVG-GGSQSQIGYIHRCAALRD--NTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYL-SMFEQEARRADG 85 (398)
T ss_dssp CSCEEEEEEE-CCTTCSSHHHHHHHHHGG--GSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHH-HHHHHHTTCTTC
T ss_pred cCcceEEEEc-CCccchhHHHHHHHHhhC--CCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHH-HHHhcccccCCC
Confidence 5578999999 687 999988888776 7789887 6554321 01111 11100 1111211 111 35
Q ss_pred CcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 102 VDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 102 ~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
+|+|+.|+|+....+++.+++++|..|+
T Consensus 86 vD~V~i~tp~~~H~~~~~~al~aGkhVl 113 (398)
T 3dty_A 86 IQAVSIATPNGTHYSITKAALEAGLHVV 113 (398)
T ss_dssp CSEEEEESCGGGHHHHHHHHHHTTCEEE
T ss_pred CCEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence 8999999999999999999999999877
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00042 Score=64.88 Aligned_cols=91 Identities=8% Similarity=0.171 Sum_probs=55.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCcc-CCCCC---cEEEecCCCch
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGV---DIALFSAGGSI 113 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~-~~~~~---DvVf~a~g~~~ 113 (279)
+++||+||| .|.+|..+.+.|.+++| ++..+ .++. .+.-.+....+... .+.+ ...++ |+||.|++...
T Consensus 21 ~~mkIgiIG-lG~mG~~~A~~L~~~G~---~V~v~-dr~~-~~~~~l~~~g~~~~-~s~~e~~~~a~~~DvVi~~vp~~~ 93 (358)
T 4e21_A 21 QSMQIGMIG-LGRMGADMVRRLRKGGH---ECVVY-DLNV-NAVQALEREGIAGA-RSIEEFCAKLVKPRVVWLMVPAAV 93 (358)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSCH-HHHHHHHTTTCBCC-SSHHHHHHHSCSSCEEEECSCGGG
T ss_pred cCCEEEEEC-chHHHHHHHHHHHhCCC---EEEEE-eCCH-HHHHHHHHCCCEEe-CCHHHHHhcCCCCCEEEEeCCHHH
Confidence 457999999 79999999999998864 44444 3321 11000000011111 1111 12344 99999999986
Q ss_pred hhhhHHHH---HhCCCEEEEcCCCC
Q 023678 114 SKKFGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 114 s~~~~~~~---~~aG~~VIDlS~~~ 135 (279)
..+.+..+ ++.|..|||.|+..
T Consensus 94 v~~vl~~l~~~l~~g~iiId~st~~ 118 (358)
T 4e21_A 94 VDSMLQRMTPLLAANDIVIDGGNSH 118 (358)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 56655554 34689999998865
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00012 Score=65.47 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=50.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+|||+||| .|.+|+.+.+.|.++ + +++.+.+++... +.+.... .....++ .+.+.++|+||+|++.....+.
T Consensus 2 ~m~I~iIG-~G~mG~~la~~l~~~-~---~v~~v~~~~~~~~~~~~~~~-g~~~~~~-~~~~~~~DvVilav~~~~~~~v 74 (276)
T 2i76_A 2 SLVLNFVG-TGTLTRFFLECLKDR-Y---EIGYILSRSIDRARNLAEVY-GGKAATL-EKHPELNGVVFVIVPDRYIKTV 74 (276)
T ss_dssp --CCEEES-CCHHHHHHHHTTC--------CCCEECSSHHHHHHHHHHT-CCCCCSS-CCCCC---CEEECSCTTTHHHH
T ss_pred CceEEEEe-CCHHHHHHHHHHHHc-C---cEEEEEeCCHHHHHHHHHHc-CCccCCH-HHHHhcCCEEEEeCChHHHHHH
Confidence 36899999 599999999988764 3 443233432110 1111000 1111111 1234679999999999877766
Q ss_pred HHHHHhCCCEEEEcCCCCCC
Q 023678 118 GPIAVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~ 137 (279)
+..+...|..|||.|+....
T Consensus 75 ~~~l~~~~~ivi~~s~~~~~ 94 (276)
T 2i76_A 75 ANHLNLGDAVLVHCSGFLSS 94 (276)
T ss_dssp HTTTCCSSCCEEECCSSSCG
T ss_pred HHHhccCCCEEEECCCCCcH
Confidence 65544467789999876543
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00087 Score=61.13 Aligned_cols=91 Identities=14% Similarity=0.132 Sum_probs=55.3
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---------CceeeeCCce----e-EEeecCc-cCCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---------GKQLSFQDKA----Y-TVEELTE-DSFDG 101 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---------G~~~~~~~~~----~-~v~~~d~-~~~~~ 101 (279)
|++|||+|+| .|.+|..+...|.+.+| ++.++ .++.. +..+...... + .+. .+. +.+.+
T Consensus 2 m~~mki~iiG-~G~~G~~~a~~L~~~g~---~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 75 (359)
T 1bg6_A 2 IESKTYAVLG-LGNGGHAFAAYLALKGQ---SVLAW-DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT-SDIGLAVKD 75 (359)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEE-SCHHHHHTT
T ss_pred CCcCeEEEEC-CCHHHHHHHHHHHhCCC---EEEEE-eCCHHHHHHHHhcCCeEEeccccccccccceec-CCHHHHHhc
Confidence 3457999999 59999999999988754 44444 33211 1111000000 0 111 122 22468
Q ss_pred CcEEEecCCCchhhhhHHHH---HhCCCEEEEcCC
Q 023678 102 VDIALFSAGGSISKKFGPIA---VEKGSIVVDNSS 133 (279)
Q Consensus 102 ~DvVf~a~g~~~s~~~~~~~---~~aG~~VIDlS~ 133 (279)
+|+||.|++.....+.+..+ +..|..||+..+
T Consensus 76 ~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 76 ADVILIVVPAIHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp CSEEEECSCGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred CCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 99999999998887777665 346888888755
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0012 Score=63.68 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=54.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-------CCce-eeeCC-----------ceeEEeecCcc-CC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------AGKQ-LSFQD-----------KAYTVEELTED-SF 99 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-------~G~~-~~~~~-----------~~~~v~~~d~~-~~ 99 (279)
|||+||| .|++|..+...|.+.+| ++..+ .++. .|.. +...+ ..+.+.. +.. .+
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~---~V~~~-D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~-d~~ea~ 76 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGA---NVRCI-DTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGT-EIEQAV 76 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEES-CHHHHG
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCC---EEEEE-ECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEEC-CHHHHH
Confidence 6999999 69999999999998865 44444 2221 0110 00011 1122221 222 35
Q ss_pred CCCcEEEecCCCc----------hhhhhHHHH---HhCCCEEEEcCCC
Q 023678 100 DGVDIALFSAGGS----------ISKKFGPIA---VEKGSIVVDNSSA 134 (279)
Q Consensus 100 ~~~DvVf~a~g~~----------~s~~~~~~~---~~aG~~VIDlS~~ 134 (279)
.++|+||.|+|+. ...+.+..+ +..|..||+.|.-
T Consensus 77 ~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv 124 (450)
T 3gg2_A 77 PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTV 124 (450)
T ss_dssp GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeC
Confidence 6899999999887 334444333 4578899998863
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.001 Score=60.55 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=51.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCC--ceeEEeecC-c-c-----CCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQD--KAYTVEELT-E-D-----SFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~--~~~~v~~~d-~-~-----~~~~~DvVf~a 108 (279)
.++|.|.||||++|+.|++.|.+++ ..+++.+ +++..+.... ... ...++.+.+ . . .+.++|+||.+
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g--~~~V~~~-~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~ 122 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKG--ITDILVV-DNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHE 122 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTT--CCCEEEE-ECCSSGGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CcEEEEE-ecCCCcchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEEC
Confidence 4689999999999999999999875 1345555 3332221111 001 112232211 0 1 12369999999
Q ss_pred CCCch----------------hhhhHHHHHhCCCEEEEcCCC
Q 023678 109 AGGSI----------------SKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 109 ~g~~~----------------s~~~~~~~~~aG~~VIDlS~~ 134 (279)
++... +..++..+.+.|+++|=.|+.
T Consensus 123 A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~SS~ 164 (357)
T 2x6t_A 123 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSA 164 (357)
T ss_dssp CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEG
T ss_pred CcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcch
Confidence 87432 133444455556676656654
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00022 Score=62.47 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=55.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC-CceEEEEEeecCCCC-ceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~-p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
++||+||| .|.+|+.+.+.|.+++| +..++... +++..- +.+... ..+.+.....+.+.++|+||+|++.....+
T Consensus 2 ~~~i~iIG-~G~mG~~~a~~l~~~g~~~~~~V~~~-~r~~~~~~~~~~~-~g~~~~~~~~e~~~~aDvVilav~~~~~~~ 78 (247)
T 3gt0_A 2 DKQIGFIG-CGNMGMAMIGGMINKNIVSSNQIICS-DLNTANLKNASEK-YGLTTTTDNNEVAKNADILILSIKPDLYAS 78 (247)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTTSSCGGGEEEE-CSCHHHHHHHHHH-HCCEECSCHHHHHHHCSEEEECSCTTTHHH
T ss_pred CCeEEEEC-ccHHHHHHHHHHHhCCCCCCCeEEEE-eCCHHHHHHHHHH-hCCEEeCChHHHHHhCCEEEEEeCHHHHHH
Confidence 36899999 79999999999998865 32344433 332110 011000 012221111123457899999998887777
Q ss_pred hHHHHH---hCCCEEEEcCCCCC
Q 023678 117 FGPIAV---EKGSIVVDNSSAFR 136 (279)
Q Consensus 117 ~~~~~~---~aG~~VIDlS~~~R 136 (279)
.+..+. ..|..||+.++...
T Consensus 79 v~~~l~~~l~~~~~vvs~~~gi~ 101 (247)
T 3gt0_A 79 IINEIKEIIKNDAIIVTIAAGKS 101 (247)
T ss_dssp HC---CCSSCTTCEEEECSCCSC
T ss_pred HHHHHHhhcCCCCEEEEecCCCC
Confidence 766553 45778887666543
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00053 Score=61.33 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=53.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchh-hh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSIS-KK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s-~~ 116 (279)
++||+||| .|.+|+.+.+.|.+.+| ++..+ +++. .+.-......+.+.+ +. +.+.++|+||.|+|.... ++
T Consensus 4 ~~~i~iiG-~G~~G~~~a~~l~~~g~---~V~~~-~~~~-~~~~~~~~~g~~~~~-~~~~~~~~~D~vi~~vp~~~~~~~ 76 (301)
T 3cky_A 4 SIKIGFIG-LGAMGKPMAINLLKEGV---TVYAF-DLME-ANVAAVVAQGAQACE-NNQKVAAASDIIFTSLPNAGIVET 76 (301)
T ss_dssp CCEEEEEC-CCTTHHHHHHHHHHTTC---EEEEE-CSSH-HHHHHHHTTTCEECS-SHHHHHHHCSEEEECCSSHHHHHH
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCC---eEEEE-eCCH-HHHHHHHHCCCeecC-CHHHHHhCCCEEEEECCCHHHHHH
Confidence 47999999 69999999999988754 44433 3321 110000001122211 11 224568999999986543 33
Q ss_pred hHH------HHHhCCCEEEEcCCCC
Q 023678 117 FGP------IAVEKGSIVVDNSSAF 135 (279)
Q Consensus 117 ~~~------~~~~aG~~VIDlS~~~ 135 (279)
... ..+..|..|||.++..
T Consensus 77 v~~~~~~l~~~l~~~~~vv~~~~~~ 101 (301)
T 3cky_A 77 VMNGPGGVLSACKAGTVIVDMSSVS 101 (301)
T ss_dssp HHHSTTCHHHHSCTTCEEEECCCCC
T ss_pred HHcCcchHhhcCCCCCEEEECCCCC
Confidence 331 2345789999988765
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0009 Score=62.48 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=59.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--------Cceee-eCCc----eeEEeecCc-cCCCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------GKQLS-FQDK----AYTVEELTE-DSFDGVD 103 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--------G~~~~-~~~~----~~~v~~~d~-~~~~~~D 103 (279)
++|||+||| .|.+|..+...|.+.+|+ +... +++.. |.... .++. .+.+.. +. +.+.++|
T Consensus 28 ~~mkI~VIG-aG~mG~alA~~La~~G~~---V~l~-~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~-d~~ea~~~aD 101 (356)
T 3k96_A 28 FKHPIAILG-AGSWGTALALVLARKGQK---VRLW-SYESDHVDEMQAEGVNNRYLPNYPFPETLKAYC-DLKASLEGVT 101 (356)
T ss_dssp CCSCEEEEC-CSHHHHHHHHHHHTTTCC---EEEE-CSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEES-CHHHHHTTCC
T ss_pred cCCeEEEEC-ccHHHHHHHHHHHHCCCe---EEEE-eCCHHHHHHHHHcCCCcccCCCCccCCCeEEEC-CHHHHHhcCC
Confidence 357999999 599999999999987653 3333 33211 11100 0111 122221 22 2356899
Q ss_pred EEEecCCCchhhhhHHHHH---hCCCEEEEcCCCCC
Q 023678 104 IALFSAGGSISKKFGPIAV---EKGSIVVDNSSAFR 136 (279)
Q Consensus 104 vVf~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~R 136 (279)
+||+|++....++.+..+. ..+..||+++..+-
T Consensus 102 vVilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~ 137 (356)
T 3k96_A 102 DILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLA 137 (356)
T ss_dssp EEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9999999987777776653 46888999887654
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0007 Score=59.68 Aligned_cols=81 Identities=15% Similarity=0.265 Sum_probs=51.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC--ccCCC--CCcEEEecCCCch-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT--EDSFD--GVDIALFSAGGSI- 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d--~~~~~--~~DvVf~a~g~~~- 113 (279)
.++|.|.||||++|+.|++.|.+++ .+++.+ +|+. + ++.+.+ ...+. ++|+||.+.+...
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~-~r~~-~----------Dl~d~~~~~~~~~~~~~d~vih~A~~~~~ 76 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKN---VEVIPT-DVQD-L----------DITNVLAVNKFFNEKKPNVVINCAAHTAV 76 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSS---EEEEEE-CTTT-C----------CTTCHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred cceEEEECCCChHHHHHHHHHHhCC---CeEEec-cCcc-C----------CCCCHHHHHHHHHhcCCCEEEECCccCCH
Confidence 5789999999999999999999874 455555 3331 1 011110 01123 6899999987532
Q ss_pred -----------------hhhhHHHHHhCCCEEEEcCCC
Q 023678 114 -----------------SKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 114 -----------------s~~~~~~~~~aG~~VIDlS~~ 134 (279)
+..++..+.+.|+++|=.|+.
T Consensus 77 ~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~~SS~ 114 (292)
T 1vl0_A 77 DKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTD 114 (292)
T ss_dssp HHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEechH
Confidence 133444455567787766664
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00038 Score=62.19 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=53.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchh-hh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSIS-KK 116 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s-~~ 116 (279)
|||+||| .|.+|+.+.+.|.+++| ++..+ +++.. -..+...+ +.+.. +. +.+.++|+||.|++.... ..
T Consensus 6 m~i~iiG-~G~~G~~~a~~l~~~g~---~V~~~-~~~~~~~~~~~~~g--~~~~~-~~~~~~~~~D~vi~~v~~~~~~~~ 77 (299)
T 1vpd_A 6 MKVGFIG-LGIMGKPMSKNLLKAGY---SLVVS-DRNPEAIADVIAAG--AETAS-TAKAIAEQCDVIITMLPNSPHVKE 77 (299)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHTT--CEECS-SHHHHHHHCSEEEECCSSHHHHHH
T ss_pred ceEEEEC-chHHHHHHHHHHHhCCC---EEEEE-eCCHHHHHHHHHCC--CeecC-CHHHHHhCCCEEEEECCCHHHHHH
Confidence 6899999 69999999999988754 44333 33211 01111111 22211 11 224578999999996543 33
Q ss_pred hH------HHHHhCCCEEEEcCCCC
Q 023678 117 FG------PIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 117 ~~------~~~~~aG~~VIDlS~~~ 135 (279)
.. ...+..|..|||.++..
T Consensus 78 ~~~~~~~l~~~l~~~~~vv~~s~~~ 102 (299)
T 1vpd_A 78 VALGENGIIEGAKPGTVLIDMSSIA 102 (299)
T ss_dssp HHHSTTCHHHHCCTTCEEEECSCCC
T ss_pred HHhCcchHhhcCCCCCEEEECCCCC
Confidence 32 23446789999998764
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0066 Score=60.51 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=56.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEe--ecC-cc-----CCCCCcEEEec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVE--ELT-ED-----SFDGVDIALFS 108 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~--~~d-~~-----~~~~~DvVf~a 108 (279)
++++|.|.||||++|++|++.|.++ +..+++.+. |+... ..+. ....+.+. |+. .+ .+.++|+||.+
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~--~g~~V~~~~-r~~~~~~~~~-~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih~ 389 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLRE--DHYEVYGLD-IGSDAISRFL-NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPL 389 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHS--SSEEEEEEE-SCCTTTGGGT-TCTTEEEEECCTTTCHHHHHHHHHHCSEEEEC
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhc--CCCEEEEEE-cCchhhhhhc-cCCceEEEECCCCCcHHHHHHhhcCCCEEEEC
Confidence 4579999999999999999999886 345666664 33221 1110 11122222 332 11 12478999998
Q ss_pred CCCch------------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 109 AGGSI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 109 ~g~~~------------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
++... +..+++.+.+.|.++|=.|+..
T Consensus 390 Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~ 434 (660)
T 1z7e_A 390 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSE 434 (660)
T ss_dssp CCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred ceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHH
Confidence 76422 1234455556777777677653
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00024 Score=63.59 Aligned_cols=88 Identities=14% Similarity=0.202 Sum_probs=53.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCc-cCCCCCcEEEecCCCc-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGS-ISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~-~s~ 115 (279)
|+||+||| .|.+|..+.+.|.+.+|+ +... +++.. -..+... ...+.+ +. +.+.++|+||.|++.. ..+
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~~---V~~~-dr~~~~~~~~~~~--g~~~~~-~~~~~~~~advvi~~v~~~~~~~ 72 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGFD---VTVW-NRNPAKCAPLVAL--GARQAS-SPAEVCAACDITIAMLADPAAAR 72 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTCC---EEEE-CSSGGGGHHHHHH--TCEECS-CHHHHHHHCSEEEECCSSHHHHH
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCCe---EEEE-cCCHHHHHHHHHC--CCeecC-CHHHHHHcCCEEEEEcCCHHHHH
Confidence 36899999 799999999999887653 3333 33221 1111111 122211 22 2245789999999986 333
Q ss_pred hhH---H---HHHhCCCEEEEcCCC
Q 023678 116 KFG---P---IAVEKGSIVVDNSSA 134 (279)
Q Consensus 116 ~~~---~---~~~~aG~~VIDlS~~ 134 (279)
+.. . ..+..|..|||.|+.
T Consensus 73 ~v~~~~~~l~~~l~~g~~vv~~st~ 97 (287)
T 3pdu_A 73 EVCFGANGVLEGIGGGRGYIDMSTV 97 (287)
T ss_dssp HHHHSTTCGGGTCCTTCEEEECSCC
T ss_pred HHHcCchhhhhcccCCCEEEECCCC
Confidence 333 2 223578899999875
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0024 Score=62.12 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=56.6
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcC-CCCceEEEEEeecCC----------CCc-ee--eeC-----------CceeEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRS----------AGK-QL--SFQ-----------DKAYTV 91 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~-~~p~~~l~~l~s~~s----------~G~-~~--~~~-----------~~~~~v 91 (279)
+++|||+||| .|++|..+...|.+. ||. ++..+..... .|. ++ ... ...+.+
T Consensus 16 ~~~mkIaVIG-lG~mG~~lA~~la~~~G~~--~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ 92 (478)
T 3g79_A 16 GPIKKIGVLG-MGYVGIPAAVLFADAPCFE--KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC 92 (478)
T ss_dssp CSCCEEEEEC-CSTTHHHHHHHHHHSTTCC--EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHhCCCC--eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE
Confidence 4568999999 799999999999988 551 5555532211 111 01 000 011333
Q ss_pred eecCccCCCCCcEEEecCCCchh------------hh---hHHHHHhCCCEEEEcCCC
Q 023678 92 EELTEDSFDGVDIALFSAGGSIS------------KK---FGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 92 ~~~d~~~~~~~DvVf~a~g~~~s------------~~---~~~~~~~aG~~VIDlS~~ 134 (279)
.. +.+.+.++|+||.|+|+... .. -+...+..|..|||.|.-
T Consensus 93 tt-d~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv 149 (478)
T 3g79_A 93 TP-DFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTI 149 (478)
T ss_dssp ES-CGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCC
T ss_pred eC-cHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCC
Confidence 22 24456789999999987631 11 122334679999998754
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00064 Score=60.03 Aligned_cols=83 Identities=20% Similarity=0.229 Sum_probs=49.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC--ccCCC--CCcEEEecCCCch--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT--EDSFD--GVDIALFSAGGSI-- 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d--~~~~~--~~DvVf~a~g~~~-- 113 (279)
|||.|.||||++|+.|++.|. +++ +++.+ +|+.. .+ ..++.+.+ .+.+. ++|+||.+++...
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~---~V~~~-~r~~~--~~-----~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~ 68 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVG---NLIAL-DVHSK--EF-----CGDFSNPKGVAETVRKLRPDVIVNAAAHTAVD 68 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTS---EEEEE-CTTCS--SS-----CCCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCC---eEEEe-ccccc--cc-----cccCCCHHHHHHHHHhcCCCEEEECcccCCHh
Confidence 489999999999999999998 653 55555 34321 00 01111111 01123 3899999986432
Q ss_pred ----------------hhhhHHHHHhCCCEEEEcCCC
Q 023678 114 ----------------SKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 114 ----------------s~~~~~~~~~aG~~VIDlS~~ 134 (279)
+..+++.+.+.|+++|=.|+.
T Consensus 69 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~ 105 (299)
T 1n2s_A 69 KAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTD 105 (299)
T ss_dssp HHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEG
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 233444555678787766664
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0011 Score=60.60 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=56.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCc---------eeEEeecCccCCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDK---------AYTVEELTEDSFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~---------~~~v~~~d~~~~~~~DvVf~a 108 (279)
.+||+||| .|.+|..+.+.|.+.+| ++.++ .|+.. -..+...+. .+.+.+ ++.+..++|+||+|
T Consensus 14 ~~kI~iIG-~G~mG~ala~~L~~~G~---~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~aDvVil~ 87 (335)
T 1z82_A 14 EMRFFVLG-AGSWGTVFAQMLHENGE---EVILW-ARRKEIVDLINVSHTSPYVEESKITVRATN-DLEEIKKEDILVIA 87 (335)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSSHHHHHHHHHHSCBTTBTTCCCCSEEES-CGGGCCTTEEEEEC
T ss_pred CCcEEEEC-cCHHHHHHHHHHHhCCC---eEEEE-eCCHHHHHHHHHhCCcccCCCCeeeEEEeC-CHHHhcCCCEEEEE
Confidence 57999999 69999999999988765 44444 33211 011111110 122222 22226789999999
Q ss_pred CCCchhhhhHHHHHhCCCEEEEcCCCC
Q 023678 109 AGGSISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 109 ~g~~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
+++....+.+..+...|..|||++...
T Consensus 88 vk~~~~~~v~~~l~~~~~~vv~~~nGi 114 (335)
T 1z82_A 88 IPVQYIREHLLRLPVKPSMVLNLSKGI 114 (335)
T ss_dssp SCGGGHHHHHTTCSSCCSEEEECCCCC
T ss_pred CCHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 998666555543322678999998544
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0036 Score=56.76 Aligned_cols=90 Identities=17% Similarity=0.181 Sum_probs=54.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF-- 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~-- 117 (279)
.||++|| .|+.|..+.+.|.+++|+ +..+ .+ +..+.-.+......+.+-..+...++|+||.|++.....+-
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G~~---V~v~-dr-~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~ 79 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAGYE---LVVW-NR-TASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELF 79 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCE---EEEC---------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHS
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCCCe---EEEE-eC-CHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHH
Confidence 4799999 899999999999998763 4444 22 21111111111122222112345689999999998754221
Q ss_pred ---HHHHHhCCCEEEEcCCCC
Q 023678 118 ---GPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 118 ---~~~~~~aG~~VIDlS~~~ 135 (279)
.......|..+||.|...
T Consensus 80 ~~~~~~~~~~~~iiid~sT~~ 100 (297)
T 4gbj_A 80 SMELVEKLGKDGVHVSMSTIS 100 (297)
T ss_dssp CHHHHHHHCTTCEEEECSCCC
T ss_pred HHHHHhhcCCCeEEEECCCCC
Confidence 223457888999998854
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00055 Score=61.90 Aligned_cols=88 Identities=15% Similarity=0.223 Sum_probs=52.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCc-cCCCCCcEEEecCCC-chhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGG-SISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~-~~s~ 115 (279)
++||+||| .|.+|+.+.+.|.+.++ ++..+ +++.. -..+...+ ..+.. +. +.+.++|+||.|++. ...+
T Consensus 30 ~~~I~iIG-~G~mG~~~a~~l~~~g~---~V~~~-~~~~~~~~~~~~~g--~~~~~-~~~~~~~~~DvVi~av~~~~~~~ 101 (316)
T 2uyy_A 30 DKKIGFLG-LGLMGSGIVSNLLKMGH---TVTVW-NRTAEKCDLFIQEG--ARLGR-TPAEVVSTCDITFACVSDPKAAK 101 (316)
T ss_dssp SSCEEEEC-CSHHHHHHHHHHHHTTC---CEEEE-CSSGGGGHHHHHTT--CEECS-CHHHHHHHCSEEEECCSSHHHHH
T ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCC---EEEEE-eCCHHHHHHHHHcC--CEEcC-CHHHHHhcCCEEEEeCCCHHHHH
Confidence 47899999 69999999999988765 34333 33221 11111111 12211 11 224578999999995 3334
Q ss_pred hhHHH------HHhCCCEEEEcCCC
Q 023678 116 KFGPI------AVEKGSIVVDNSSA 134 (279)
Q Consensus 116 ~~~~~------~~~aG~~VIDlS~~ 134 (279)
+.... .+..|..|||.|..
T Consensus 102 ~v~~~~~~~~~~l~~~~~vv~~s~~ 126 (316)
T 2uyy_A 102 DLVLGPSGVLQGIRPGKCYVDMSTV 126 (316)
T ss_dssp HHHHSTTCGGGGCCTTCEEEECSCC
T ss_pred HHHcCchhHhhcCCCCCEEEECCCC
Confidence 43332 23568899998764
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0013 Score=58.16 Aligned_cols=70 Identities=10% Similarity=0.165 Sum_probs=52.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.|||+||| .|.+|..|.+.|.+.+| ++..+.. + +++.++| |+|+|.....+.+
T Consensus 6 ~mkI~IIG-~G~~G~sLA~~L~~~G~---~V~~~~~-~--------------------~~~~~aD--ilavP~~ai~~vl 58 (232)
T 3dfu_A 6 RLRVGIFD-DGSSTVNMAEKLDSVGH---YVTVLHA-P--------------------EDIRDFE--LVVIDAHGVEGYV 58 (232)
T ss_dssp CCEEEEEC-CSCCCSCHHHHHHHTTC---EEEECSS-G--------------------GGGGGCS--EEEECSSCHHHHH
T ss_pred CcEEEEEe-eCHHHHHHHHHHHHCCC---EEEEecC-H--------------------HHhccCC--EEEEcHHHHHHHH
Confidence 57999999 69999999999998765 4444422 1 1234678 8889988777777
Q ss_pred HHHH---hCCCEEEEcCCCC
Q 023678 119 PIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 119 ~~~~---~aG~~VIDlS~~~ 135 (279)
..+. ..|..|||.|+..
T Consensus 59 ~~l~~~l~~g~ivvd~sgs~ 78 (232)
T 3dfu_A 59 EKLSAFARRGQMFLHTSLTH 78 (232)
T ss_dssp HHHHTTCCTTCEEEECCSSC
T ss_pred HHHHHhcCCCCEEEEECCcC
Confidence 7665 4688999998765
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0068 Score=54.47 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=42.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC----CceEEEEEeecCCCCceeeeCCceeEEe--ecC-cc----CC-CCCcEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRSAGKQLSFQDKAYTVE--ELT-ED----SF-DGVDIAL 106 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~----p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d-~~----~~-~~~DvVf 106 (279)
+|+|.|.||||++|+.|++.|.++++ +..+++.+. ++..... ......+.+. |+. .+ .+ .++|+||
T Consensus 14 ~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~-r~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vi 91 (342)
T 2hrz_A 14 GMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLID-VFQPEAP-AGFSGAVDARAADLSAPGEAEKLVEARPDVIF 91 (342)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEE-SSCCCCC-TTCCSEEEEEECCTTSTTHHHHHHHTCCSEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEE-ccCCccc-cccCCceeEEEcCCCCHHHHHHHHhcCCCEEE
Confidence 46899999999999999999988741 014555553 3321110 0011122222 332 11 13 4799999
Q ss_pred ecCCCc
Q 023678 107 FSAGGS 112 (279)
Q Consensus 107 ~a~g~~ 112 (279)
.+++..
T Consensus 92 h~A~~~ 97 (342)
T 2hrz_A 92 HLAAIV 97 (342)
T ss_dssp ECCCCC
T ss_pred ECCccC
Confidence 998753
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0013 Score=60.16 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=57.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC--C--ceEEEEEeecCCC------CceeeeC--------C----ceeEEeecCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF--P--YRSIKMLASKRSA------GKQLSFQ--------D----KAYTVEELTE 96 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~--p--~~~l~~l~s~~s~------G~~~~~~--------~----~~~~v~~~d~ 96 (279)
++||+||| .|.+|..+...|.+.+. + ..++..+ .++.. ...+... + ..+.+. .+.
T Consensus 8 ~mkI~iIG-~G~mG~~~a~~l~~~g~~~~~~~~~V~~~-~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 84 (354)
T 1x0v_A 8 SKKVCIVG-SGNWGSAIAKIVGGNAAQLAQFDPRVTMW-VFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAV-PDV 84 (354)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHHHHCTTEEEEEEEE-CCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEE-SSH
T ss_pred CCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEEE-EcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEE-cCH
Confidence 46999999 69999999999987530 0 0344444 33221 1111100 0 011221 122
Q ss_pred -cCCCCCcEEEecCCCchhhhhHHHHH---hCCCEEEEcCCCCC
Q 023678 97 -DSFDGVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSAFR 136 (279)
Q Consensus 97 -~~~~~~DvVf~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~R 136 (279)
+...++|+||+|++.....+....+. ..|..|||++...-
T Consensus 85 ~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 85 VQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp HHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred HHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence 22468999999999877777766653 35788999987553
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0009 Score=61.23 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=42.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC----CceEEEEEeecCC----CCc--eeeeCCce--eEEeec-C-ccCCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGK--QLSFQDKA--YTVEEL-T-EDSFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~----p~~~l~~l~s~~s----~G~--~~~~~~~~--~~v~~~-d-~~~~~~~Dv 104 (279)
+|||+|+||+|++|+.|+..|.++++ +..+++++..... .|. .+...... ..+.+. + .+.+.++|+
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~ 83 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCE
Confidence 37999999999999999999988753 1236666632110 111 01000001 123221 2 234678999
Q ss_pred EEecCCC
Q 023678 105 ALFSAGG 111 (279)
Q Consensus 105 Vf~a~g~ 111 (279)
||.+.+.
T Consensus 84 Vih~Ag~ 90 (327)
T 1y7t_A 84 ALLVGAA 90 (327)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9998763
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00097 Score=58.41 Aligned_cols=90 Identities=10% Similarity=0.103 Sum_probs=52.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|||+||| .|.+|+.+.+.|.+.+. .++..+ +++.. -+.+... ..+.+.....+.+ ++|+||.|++.....+..
T Consensus 1 m~i~iiG-~G~mG~~~a~~l~~~g~--~~v~~~-~r~~~~~~~~~~~-~g~~~~~~~~~~~-~~D~vi~~v~~~~~~~v~ 74 (263)
T 1yqg_A 1 MNVYFLG-GGNMAAAVAGGLVKQGG--YRIYIA-NRGAEKRERLEKE-LGVETSATLPELH-SDDVLILAVKPQDMEAAC 74 (263)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCS--CEEEEE-CSSHHHHHHHHHH-TCCEEESSCCCCC-TTSEEEECSCHHHHHHHH
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCC--CeEEEE-CCCHHHHHHHHHh-cCCEEeCCHHHHh-cCCEEEEEeCchhHHHHH
Confidence 5899999 59999999999987651 244333 43211 0111110 0122322112345 899999999965544444
Q ss_pred HHHHhCCCEEEEcCCCC
Q 023678 119 PIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~ 135 (279)
..+...|..|||+++..
T Consensus 75 ~~l~~~~~ivv~~~~g~ 91 (263)
T 1yqg_A 75 KNIRTNGALVLSVAAGL 91 (263)
T ss_dssp TTCCCTTCEEEECCTTC
T ss_pred HHhccCCCEEEEecCCC
Confidence 33221288999996654
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0026 Score=58.29 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=61.1
Q ss_pred CCEEEEE-CcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEee-cCccCCC--CCcEEEecCCCchh
Q 023678 39 APSVAVV-GVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSFD--GVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIi-GATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~-~d~~~~~--~~DvVf~a~g~~~s 114 (279)
..+++|| |+||..|..+++.|.+++| +++.-..++..|+.+ . .+.+.+ ++ +... ++|+++.++|....
T Consensus 13 ~~siaVV~Gasg~~G~~~~~~l~~~G~---~~v~~VnP~~~g~~i--~--G~~vy~sl~-el~~~~~vD~avI~vP~~~~ 84 (305)
T 2fp4_A 13 KNTKVICQGFTGKQGTFHSQQALEYGT---NLVGGTTPGKGGKTH--L--GLPVFNTVK-EAKEQTGATASVIYVPPPFA 84 (305)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEECTTCTTCEE--T--TEEEESSHH-HHHHHHCCCEEEECCCHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHCCC---cEEEEeCCCcCcceE--C--CeeeechHH-HhhhcCCCCEEEEecCHHHH
Confidence 4568888 9999999999999988754 344333444334332 1 233332 21 1112 68999999999999
Q ss_pred hhhHHHHHhCCCEE-EEcCCCC
Q 023678 115 KKFGPIAVEKGSIV-VDNSSAF 135 (279)
Q Consensus 115 ~~~~~~~~~aG~~V-IDlS~~~ 135 (279)
.+.+.++.++|++. |=++..+
T Consensus 85 ~~~~~e~i~~Gi~~iv~~t~G~ 106 (305)
T 2fp4_A 85 AAAINEAIDAEVPLVVCITEGI 106 (305)
T ss_dssp HHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHHCCCCEEEEECCCC
Confidence 99999999999965 4466654
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0066 Score=48.30 Aligned_cols=86 Identities=10% Similarity=0.001 Sum_probs=59.9
Q ss_pred CCEEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
+.+||||||| +..|..+++.|.+++| ++..+.-+ ...+ .+ ..... +..++.++|+|+.+++.....
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~---~V~pVnP~---~~~i--~G--~~~y~-sl~dlp~vDlavi~~p~~~v~ 72 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGH---EFIPVGRK---KGEV--LG--KTIIN-ERPVIEGVDTVTLYINPQNQL 72 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTC---CEEEESSS---CSEE--TT--EECBC-SCCCCTTCCEEEECSCHHHHG
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCC---eEEEECCC---CCcC--CC--eeccC-ChHHCCCCCEEEEEeCHHHHH
Confidence 4679999998 6789999999998876 56666422 1111 11 11111 122332389999999999999
Q ss_pred hhHHHHHhCCCEEEEcCCCC
Q 023678 116 KFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~ 135 (279)
++++++.+.|++.|=+++.|
T Consensus 73 ~~v~e~~~~g~k~v~~~~G~ 92 (122)
T 3ff4_A 73 SEYNYILSLKPKRVIFNPGT 92 (122)
T ss_dssp GGHHHHHHHCCSEEEECTTC
T ss_pred HHHHHHHhcCCCEEEECCCC
Confidence 99999999998755467666
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0053 Score=57.46 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
++++|.|.||||++|+.|++.|.++ ..+++.+.
T Consensus 68 ~~~~vlVTGatG~iG~~l~~~L~~~---g~~V~~~~ 100 (427)
T 4f6c_A 68 PLGNTLLTGATGFLGAYLIEALQGY---SHRIYCFI 100 (427)
T ss_dssp CCEEEEEECTTSHHHHHHHHHHTTT---EEEEEEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHHcC---CCEEEEEE
Confidence 3578999999999999999999664 45666664
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00071 Score=61.42 Aligned_cols=85 Identities=13% Similarity=0.245 Sum_probs=56.3
Q ss_pred CEEEEECcCcHHHHHH-HHHHHcCCCCceEEEEEeecCCC-Cceeee-CCceeEEeecCccCC--CCCcEEEecCCCchh
Q 023678 40 PSVAVVGVTGAVGQEF-LSVLSDRDFPYRSIKMLASKRSA-GKQLSF-QDKAYTVEELTEDSF--DGVDIALFSAGGSIS 114 (279)
Q Consensus 40 ~kVaIiGATG~VG~eL-l~lL~~~~~p~~~l~~l~s~~s~-G~~~~~-~~~~~~v~~~d~~~~--~~~DvVf~a~g~~~s 114 (279)
+||+||| +|.+|+.+ ++.|.+ +.++++.+.+++.. .+.+.. .+....+.+++ +.+ .++|+|+.|+++...
T Consensus 1 ~~vgiiG-~G~~g~~~~~~~l~~---~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~-~~l~~~~~D~V~i~tp~~~h 75 (332)
T 2glx_A 1 NRWGLIG-ASTIAREWVIGAIRA---TGGEVVSMMSTSAERGAAYATENGIGKSVTSVE-ELVGDPDVDAVYVSTTNELH 75 (332)
T ss_dssp CEEEEES-CCHHHHHTHHHHHHH---TTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHH-HHHTCTTCCEEEECSCGGGH
T ss_pred CeEEEEc-ccHHHHHhhhHHhhc---CCCeEEEEECCCHHHHHHHHHHcCCCcccCCHH-HHhcCCCCCEEEEeCChhHh
Confidence 5899999 59999998 777765 56788877765421 111110 01110111211 112 268999999999999
Q ss_pred hhhHHHHHhCCCEEE
Q 023678 115 KKFGPIAVEKGSIVV 129 (279)
Q Consensus 115 ~~~~~~~~~aG~~VI 129 (279)
.+++..++++|..|+
T Consensus 76 ~~~~~~al~~Gk~v~ 90 (332)
T 2glx_A 76 REQTLAAIRAGKHVL 90 (332)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCeEE
Confidence 999999999999776
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0028 Score=56.72 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=57.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC--ceeee----------CC------------ceeEEee
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG--KQLSF----------QD------------KAYTVEE 93 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G--~~~~~----------~~------------~~~~v~~ 93 (279)
++.||+||| .|.+|+.+.+.|.++++ ++.++ .++... +.... .+ ..+...
T Consensus 3 ~~~kV~VIG-aG~mG~~iA~~la~~G~---~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~- 76 (283)
T 4e12_A 3 GITNVTVLG-TGVLGSQIAFQTAFHGF---AVTAY-DINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS- 76 (283)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE-
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC---eEEEE-eCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe-
Confidence 457999999 59999999999998865 44444 332110 00000 00 011222
Q ss_pred cCc-cCCCCCcEEEecCCCc--hhhhhHHHH---HhCCCEEEEcCCCCC
Q 023678 94 LTE-DSFDGVDIALFSAGGS--ISKKFGPIA---VEKGSIVVDNSSAFR 136 (279)
Q Consensus 94 ~d~-~~~~~~DvVf~a~g~~--~s~~~~~~~---~~aG~~VIDlS~~~R 136 (279)
.+. +.+.++|+||.|++.. .-+++..++ ...|+.++|+++...
T Consensus 77 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~ 125 (283)
T 4e12_A 77 DDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLL 125 (283)
T ss_dssp SCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSC
T ss_pred CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 122 2367899999999987 444444443 457889999998764
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0025 Score=61.30 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=52.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEe--ecC-c----cCCCCCcEEEec
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVE--ELT-E----DSFDGVDIALFS 108 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~--~~d-~----~~~~~~DvVf~a 108 (279)
|++++|.|+| +|.+|+.+++.|.+.+ .++.+ .+|+.. .+.+.......... ++. . +.+.++|+|+.|
T Consensus 1 M~~k~VlViG-aG~iG~~ia~~L~~~G---~~V~v-~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~ 75 (450)
T 1ff9_A 1 MATKSVLMLG-SGFVTRPTLDVLTDSG---IKVTV-ACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISL 75 (450)
T ss_dssp -CCCEEEEEC-CSTTHHHHHHHHHTTT---CEEEE-EESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCc---CEEEE-EECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence 3457899999 7999999999999764 35443 344311 01111000112121 221 1 124689999999
Q ss_pred CCCchhhhhHHHHHhCCCEEEEcC
Q 023678 109 AGGSISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 109 ~g~~~s~~~~~~~~~aG~~VIDlS 132 (279)
+|..........++++|..|+|.+
T Consensus 76 a~~~~~~~i~~a~l~~g~~vvd~~ 99 (450)
T 1ff9_A 76 IPYTFHATVIKSAIRQKKHVVTTS 99 (450)
T ss_dssp CC--CHHHHHHHHHHHTCEEEESS
T ss_pred CccccchHHHHHHHhCCCeEEEee
Confidence 997655555555566677777764
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00056 Score=63.23 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=54.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC--------Cc----eeEEeecCc-cCCCCCcEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ--------DK----AYTVEELTE-DSFDGVDIA 105 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~--------~~----~~~v~~~d~-~~~~~~DvV 105 (279)
+||+||| .|.+|..+...|.+.+| ++.++ .++.. -..+... +. .+.+.. +. +...++|+|
T Consensus 16 ~kI~iIG-~G~mG~~la~~L~~~G~---~V~~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~aDvV 89 (366)
T 1evy_A 16 NKAVVFG-SGAFGTALAMVLSKKCR---EVCVW-HMNEEEVRLVNEKRENVLFLKGVQLASNITFTS-DVEKAYNGAEII 89 (366)
T ss_dssp EEEEEEC-CSHHHHHHHHHHTTTEE---EEEEE-CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEES-CHHHHHTTCSSE
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCCC---EEEEE-ECCHHHHHHHHHcCcccccccccccccceeeeC-CHHHHHcCCCEE
Confidence 3899999 59999999999987643 44444 33210 0001000 00 122221 22 224679999
Q ss_pred EecCCCchhhhhHHH----H---HhC-CCEEEEcCCCC
Q 023678 106 LFSAGGSISKKFGPI----A---VEK-GSIVVDNSSAF 135 (279)
Q Consensus 106 f~a~g~~~s~~~~~~----~---~~a-G~~VIDlS~~~ 135 (279)
|+|++.....+.+.. + +.. |..|||++...
T Consensus 90 ilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi 127 (366)
T 1evy_A 90 LFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 127 (366)
T ss_dssp EECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred EECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcC
Confidence 999998666665554 3 345 88999998543
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00089 Score=61.84 Aligned_cols=86 Identities=13% Similarity=0.260 Sum_probs=55.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee---eCCceeEEeecCccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS---FQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~---~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
.++|+||| .|.+|+.+.+.|.+.++ ++... .++. .+... ..+ +.+.++ .+.+.++|+||+|++.....
T Consensus 16 ~~~I~IIG-~G~mG~alA~~L~~~G~---~V~~~-~~~~-~~~~~~a~~~G--~~~~~~-~e~~~~aDvVilavp~~~~~ 86 (338)
T 1np3_A 16 GKKVAIIG-YGSQGHAHACNLKDSGV---DVTVG-LRSG-SATVAKAEAHG--LKVADV-KTAVAAADVVMILTPDEFQG 86 (338)
T ss_dssp TSCEEEEC-CSHHHHHHHHHHHHTTC---CEEEE-CCTT-CHHHHHHHHTT--CEEECH-HHHHHTCSEEEECSCHHHHH
T ss_pred CCEEEEEC-chHHHHHHHHHHHHCcC---EEEEE-ECCh-HHHHHHHHHCC--CEEccH-HHHHhcCCEEEEeCCcHHHH
Confidence 46899999 69999999999988764 33333 3332 11111 112 222221 12346799999999998777
Q ss_pred hhHH-HH---HhCCCEEEEcCC
Q 023678 116 KFGP-IA---VEKGSIVVDNSS 133 (279)
Q Consensus 116 ~~~~-~~---~~aG~~VIDlS~ 133 (279)
+.+. .+ ++.|+.|+|.++
T Consensus 87 ~v~~~~i~~~l~~~~ivi~~~g 108 (338)
T 1np3_A 87 RLYKEEIEPNLKKGATLAFAHG 108 (338)
T ss_dssp HHHHHHTGGGCCTTCEEEESCC
T ss_pred HHHHHHHHhhCCCCCEEEEcCC
Confidence 7766 43 346889999865
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0014 Score=57.94 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=52.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
+||+||| .|.+|..+.+.|.+ +|. +..+ +++..- ..+...+ ..+.+ ..+.+.++|+||.|++... ..+.
T Consensus 2 ~~i~iiG-~G~~G~~~a~~l~~-g~~---V~~~-~~~~~~~~~~~~~g--~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v 72 (289)
T 2cvz_A 2 EKVAFIG-LGAMGYPMAGHLAR-RFP---TLVW-NRTFEKALRHQEEF--GSEAV-PLERVAEARVIFTCLPTTREVYEV 72 (289)
T ss_dssp CCEEEEC-CSTTHHHHHHHHHT-TSC---EEEE-CSSTHHHHHHHHHH--CCEEC-CGGGGGGCSEEEECCSSHHHHHHH
T ss_pred CeEEEEc-ccHHHHHHHHHHhC-CCe---EEEE-eCCHHHHHHHHHCC--CcccC-HHHHHhCCCEEEEeCCChHHHHHH
Confidence 6899999 69999999999988 763 3333 332210 0111111 11222 2233567999999999875 4444
Q ss_pred HHHH---HhCCCEEEEcCCC
Q 023678 118 GPIA---VEKGSIVVDNSSA 134 (279)
Q Consensus 118 ~~~~---~~aG~~VIDlS~~ 134 (279)
+..+ +..|..|||.|..
T Consensus 73 ~~~l~~~l~~~~~vv~~s~~ 92 (289)
T 2cvz_A 73 AEALYPYLREGTYWVDATSG 92 (289)
T ss_dssp HHHHTTTCCTTEEEEECSCC
T ss_pred HHHHHhhCCCCCEEEECCCC
Confidence 4443 3468889998764
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00092 Score=58.42 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=52.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ecC-c----cCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELT-E----DSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d-~----~~~~~~DvVf~a~g~~ 112 (279)
++|.|.||||++|+.|++.|.+++ .+++.+ +|+... ... . ...+. |+. . ..+.++|+||.+.+..
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~-~r~~~~-~~~-~--~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~ 74 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLA---HEVRLS-DIVDLG-AAE-A--HEEIVACDLADAQAVHDLVKDCDGIIHLGGVS 74 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTE---EEEEEC-CSSCCC-CCC-T--TEEECCCCTTCHHHHHHHHTTCSEEEECCSCC
T ss_pred ceEEEECCCCHHHHHHHHHHHhCC---CEEEEE-eCCCcc-ccC-C--CccEEEccCCCHHHHHHHHcCCCEEEECCcCC
Confidence 589999999999999999998874 455555 343321 111 1 12222 222 1 1246899999997643
Q ss_pred h--------------hhhhHHHHHhCCC-EEEEcCCC
Q 023678 113 I--------------SKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 113 ~--------------s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
. ...+++.+.+.|. ++|=.|+.
T Consensus 75 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~ 111 (267)
T 3ay3_A 75 VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSN 111 (267)
T ss_dssp SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCH
Confidence 1 1334445556776 56656654
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0022 Score=60.85 Aligned_cols=118 Identities=18% Similarity=0.226 Sum_probs=60.4
Q ss_pred hccCCCCCCCCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCC--Cc-e-EEEEEeecCCC--Cceee----
Q 023678 14 ISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDF--PY-R-SIKMLASKRSA--GKQLS---- 83 (279)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~--p~-~-~l~~l~s~~s~--G~~~~---- 83 (279)
..-+++.++|.....+... ..++.||+|+| .|..|..|...|.+.+| +. + ..+.+..|+.. ++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~---~~~p~KI~ViG-aGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in 87 (391)
T 4fgw_A 12 SGHLNAGRKRSSSSVSLKA---AEKPFKVTVIG-SGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIIN 87 (391)
T ss_dssp ------------------------CCEEEEEEC-CSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHT
T ss_pred hhhhccccccccccccccc---cCCCCeEEEEC-cCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHH
Confidence 4556676677665554444 34458999999 59999999999986432 22 1 22334444321 11110
Q ss_pred --------eCC----ceeEEeecC-ccCCCCCcEEEecCCCchhhhhHHHHH---hCCCEEEEcCCCCC
Q 023678 84 --------FQD----KAYTVEELT-EDSFDGVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSAFR 136 (279)
Q Consensus 84 --------~~~----~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~R 136 (279)
+++ ..+.+. .| .+.+.++|++|+|+|+..-++.+.++. ..+..+|.++--+-
T Consensus 88 ~~~~N~~YLpgv~Lp~~i~~t-~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie 155 (391)
T 4fgw_A 88 TRHQNVKYLPGITLPDNLVAN-PDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFE 155 (391)
T ss_dssp TTCCBTTTBTTCCCCSSEEEE-SCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred hcCcCcccCCCCcCCCCcEEe-CCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccc
Confidence 011 112222 12 233578999999999998888887764 46778887776653
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0033 Score=57.69 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=43.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceeeeC-----CceeEEeecCccCCCCCcEEEecCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSFQ-----DKAYTVEELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~~~-----~~~~~v~~~d~~~~~~~DvVf~a~g 110 (279)
+++||+|+|| |+||..++-.|...++ ..+++++.-.. ..|...... ..+..+..-+.+++.++|+||.+.|
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~-~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g 83 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQT-ANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAG 83 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTC-SSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCC
Confidence 3589999997 9999999999987743 33666663221 112111111 1233443323456889999999988
Q ss_pred Cc
Q 023678 111 GS 112 (279)
Q Consensus 111 ~~ 112 (279)
..
T Consensus 84 ~p 85 (318)
T 1y6j_A 84 AN 85 (318)
T ss_dssp C-
T ss_pred CC
Confidence 64
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0019 Score=58.38 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=55.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec--CCC-CceeeeCC---------ceeEEeec-Cc-cCCCCCcEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK--RSA-GKQLSFQD---------KAYTVEEL-TE-DSFDGVDIA 105 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~--~s~-G~~~~~~~---------~~~~v~~~-d~-~~~~~~DvV 105 (279)
|||+||| .|.+|..+...|.+.+| ++..+ .+ +.. -..+...+ ..+.+.+. +. +...++|+|
T Consensus 1 m~I~iiG-~G~mG~~~a~~L~~~g~---~V~~~-~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~v 75 (335)
T 1txg_A 1 MIVSILG-AGAMGSALSVPLVDNGN---EVRIW-GTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVV 75 (335)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCC---EEEEE-CCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCC---eEEEE-EccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEE
Confidence 5899999 59999999999987754 44444 33 210 00111011 01122221 11 224689999
Q ss_pred EecCCCchhhhhHHHHH--hCCCEEEEcCCCC
Q 023678 106 LFSAGGSISKKFGPIAV--EKGSIVVDNSSAF 135 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~~--~aG~~VIDlS~~~ 135 (279)
|.|++.....+.+..+. ..|..|||++...
T Consensus 76 i~~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 76 LLGVSTDGVLPVMSRILPYLKDQYIVLISKGL 107 (335)
T ss_dssp EECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred EEcCChHHHHHHHHHHhcCCCCCEEEEEcCcC
Confidence 99999987766665543 4577899987443
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0043 Score=56.07 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=41.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCC--CceEEEEEeecCCCCceeeeCCceeEEeecC-cc----CCCC---CcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDF--PYRSIKMLASKRSAGKQLSFQDKAYTVEELT-ED----SFDG---VDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~--p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~----~~~~---~DvVf~a~ 109 (279)
++|.|.||||++|+.|++.|.+++- ...+++.+. |+.........+......|+. .+ .+.+ +|+||.|+
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~-r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a 80 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVA-RRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVT 80 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEE-SSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEe-CCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECC
Confidence 5899999999999999999988740 015666664 333221111111111222332 11 2344 99999997
Q ss_pred CC
Q 023678 110 GG 111 (279)
Q Consensus 110 g~ 111 (279)
+.
T Consensus 81 ~~ 82 (364)
T 2v6g_A 81 WA 82 (364)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00067 Score=63.17 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=55.6
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecCccCC----CCCcEEEe
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTEDSF----DGVDIALF 107 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d~~~~----~~~DvVf~ 107 (279)
|+.....+||+||| .|.+|+.+.+.|.+.++ ++... +++.... .....+.. ...+++ +.+ .++|+||+
T Consensus 2 m~~~~~~~kIgIIG-~G~mG~slA~~L~~~G~---~V~~~-dr~~~~~~~a~~~G~~-~~~~~~-e~~~~a~~~aDlVil 74 (341)
T 3ktd_A 2 MTTKDISRPVCILG-LGLIGGSLLRDLHAANH---SVFGY-NRSRSGAKSAVDEGFD-VSADLE-ATLQRAAAEDALIVL 74 (341)
T ss_dssp ----CCSSCEEEEC-CSHHHHHHHHHHHHTTC---CEEEE-CSCHHHHHHHHHTTCC-EESCHH-HHHHHHHHTTCEEEE
T ss_pred CCccCCCCEEEEEe-ecHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHHcCCe-eeCCHH-HHHHhcccCCCEEEE
Confidence 44444567899999 79999999999998764 44434 3321100 00011111 111111 112 25799999
Q ss_pred cCCCchhhhhHHHHH--hCCCEEEEcCCC
Q 023678 108 SAGGSISKKFGPIAV--EKGSIVVDNSSA 134 (279)
Q Consensus 108 a~g~~~s~~~~~~~~--~aG~~VIDlS~~ 134 (279)
|+|.....+.+..+. ..|+.|+|.++.
T Consensus 75 avP~~~~~~vl~~l~~~~~~~iv~Dv~Sv 103 (341)
T 3ktd_A 75 AVPMTAIDSLLDAVHTHAPNNGFTDVVSV 103 (341)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCCEEECCSC
T ss_pred eCCHHHHHHHHHHHHccCCCCEEEEcCCC
Confidence 999876666555443 578999999875
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.01 Score=46.92 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=60.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeeeCCceeEEeecC-ccCC---CCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSFQDKAYTVEELT-EDSF---DGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~~~~~~~v~~~d-~~~~---~~~DvVf~a~g~~ 112 (279)
+.++.|+| +|..|+.+++.|.++ +.++++.+.+... .|+.+ . .+.+...+ ...+ .++|.||.|.|..
T Consensus 4 ~~~vlIiG-aG~~g~~l~~~l~~~--~g~~vvg~~d~~~~~~g~~i--~--g~pV~g~~~l~~~~~~~~id~viia~~~~ 76 (141)
T 3nkl_A 4 KKKVLIYG-AGSAGLQLANMLRQG--KEFHPIAFIDDDRKKHKTTM--Q--GITIYRPKYLERLIKKHCISTVLLAVPSA 76 (141)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHS--SSEEEEEEECSCGGGTTCEE--T--TEEEECGGGHHHHHHHHTCCEEEECCTTS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhC--CCcEEEEEEECCcccCCCEe--c--CeEEECHHHHHHHHHHCCCCEEEEeCCCC
Confidence 56899999 589999999999887 6889888876432 23222 1 23333322 1111 2689999999865
Q ss_pred hh---hhhHHHHHhCCCEEEEcCCC
Q 023678 113 IS---KKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 113 ~s---~~~~~~~~~aG~~VIDlS~~ 134 (279)
.. ++++..+.+.|+.|.....-
T Consensus 77 ~~~~~~~i~~~l~~~gv~v~~vP~~ 101 (141)
T 3nkl_A 77 SQVQKKVIIESLAKLHVEVLTIPNL 101 (141)
T ss_dssp CHHHHHHHHHHHHTTTCEEEECCCH
T ss_pred CHHHHHHHHHHHHHcCCeEEECCCH
Confidence 43 67777888999998765543
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0019 Score=61.51 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=52.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-------CC-ceeeeCC-----------ceeEEeecCc-cCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------AG-KQLSFQD-----------KAYTVEELTE-DSF 99 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-------~G-~~~~~~~-----------~~~~v~~~d~-~~~ 99 (279)
|||+||| +|++|..+...|.+.+| ++..+ .++. .+ .++...+ ..+... .+. +.+
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~---~V~~~-d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t-~~~~~~~ 74 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGH---EVIGV-DVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGT-TDFKKAV 74 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-SCHHHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC---EEEEE-ECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEe-CCHHHHh
Confidence 5899999 79999999999998865 44444 3221 01 0111010 012222 122 235
Q ss_pred CCCcEEEecCCCch----------hhhhHHH---HHhC---CCEEEEcCCC
Q 023678 100 DGVDIALFSAGGSI----------SKKFGPI---AVEK---GSIVVDNSSA 134 (279)
Q Consensus 100 ~~~DvVf~a~g~~~----------s~~~~~~---~~~a---G~~VIDlS~~ 134 (279)
.++|+||.|+|+.. ..+.+.. ++.. |..||+.|+-
T Consensus 75 ~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv 125 (436)
T 1mv8_A 75 LDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTV 125 (436)
T ss_dssp HTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCC
T ss_pred ccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCc
Confidence 67999999998755 3333333 3456 8999987653
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0085 Score=54.16 Aligned_cols=32 Identities=9% Similarity=0.247 Sum_probs=25.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
|||.|.||||++|+.|++.|.++ +..+++.+.
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~--~g~~V~~~~ 32 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKN--TQDTVVNID 32 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHH--CSCEEEEEE
T ss_pred CEEEEECCCchHhHHHHHHHHhc--CCCeEEEEe
Confidence 47999999999999999999876 334666553
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0025 Score=55.89 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=52.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|||+||| .|.+|..+.+.|.+.+| ++.. .++........ ....... .+. .+.+.++|+||+|++.....+.+
T Consensus 1 M~I~iIG-~G~mG~~la~~l~~~g~---~V~~-~~~~~~~~~~~~~~~~g~~-~~~-~~~~~~aDvvi~~v~~~~~~~~~ 73 (264)
T 1i36_A 1 LRVGFIG-FGEVAQTLASRLRSRGV---EVVT-SLEGRSPSTIERARTVGVT-ETS-EEDVYSCPVVISAVTPGVALGAA 73 (264)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTC---EEEE-CCTTCCHHHHHHHHHHTCE-ECC-HHHHHTSSEEEECSCGGGHHHHH
T ss_pred CeEEEEe-chHHHHHHHHHHHHCCC---eEEE-eCCccCHHHHHHHHHCCCc-CCH-HHHHhcCCEEEEECCCHHHHHHH
Confidence 4899999 69999999999988765 4444 33310101111 0000112 211 12246799999999997655555
Q ss_pred HHHHhC--CCEEEEcCCC
Q 023678 119 PIAVEK--GSIVVDNSSA 134 (279)
Q Consensus 119 ~~~~~a--G~~VIDlS~~ 134 (279)
..+.+. + .|||.|+.
T Consensus 74 ~~~~~~~~~-~vi~~s~~ 90 (264)
T 1i36_A 74 RRAGRHVRG-IYVDINNI 90 (264)
T ss_dssp HHHHTTCCS-EEEECSCC
T ss_pred HHHHHhcCc-EEEEccCC
Confidence 555432 3 78898764
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0053 Score=54.61 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=41.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-ccC----CC--CCcEEEecC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDS----FD--GVDIALFSA 109 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~~----~~--~~DvVf~a~ 109 (279)
.++++|.|.||||++|+.|++.|.++++ +++.+ +|+.....+ .......|+. .+. +. .+|+||.++
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~---~V~~~-~r~~~~~~l---~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 82 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNV---EVFGT-SRNNEAKLP---NVEMISLDIMDSQRVKKVISDIKPDYIFHLA 82 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTC---EEEEE-ESCTTCCCT---TEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCC---EEEEE-ecCCccccc---eeeEEECCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 3468999999999999999999998754 55555 343322211 1111112332 111 23 389999998
Q ss_pred CCc
Q 023678 110 GGS 112 (279)
Q Consensus 110 g~~ 112 (279)
+..
T Consensus 83 ~~~ 85 (321)
T 2pk3_A 83 AKS 85 (321)
T ss_dssp SCC
T ss_pred ccc
Confidence 753
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=60.34 Aligned_cols=94 Identities=10% Similarity=0.150 Sum_probs=55.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC--C--ceEEEEEeecCCC--C--c--eeee--------CC----ceeEEeecCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF--P--YRSIKMLASKRSA--G--K--QLSF--------QD----KAYTVEELTE 96 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~--p--~~~l~~l~s~~s~--G--~--~~~~--------~~----~~~~v~~~d~ 96 (279)
++||+||| +|.+|..+...|.+.+. | ..++..+ .++.. + + .+.. .+ ..+.... +.
T Consensus 21 ~~kI~iIG-aG~mG~alA~~L~~~G~~~~~~~~~V~~~-~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~-~~ 97 (375)
T 1yj8_A 21 PLKISILG-SGNWASAISKVVGTNAKNNYLFENEVRMW-IRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHS-DL 97 (375)
T ss_dssp CBCEEEEC-CSHHHHHHHHHHHHHHHHCTTBCSCEEEE-CCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEES-ST
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHcCCccCCCCCeEEEE-ECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEEC-CH
Confidence 36899999 69999999999977640 0 0234444 33221 0 0 0100 01 0122221 22
Q ss_pred -cCCCCCcEEEecCCCchhhhhHHHHHh-------CCCEEEEcCCCC
Q 023678 97 -DSFDGVDIALFSAGGSISKKFGPIAVE-------KGSIVVDNSSAF 135 (279)
Q Consensus 97 -~~~~~~DvVf~a~g~~~s~~~~~~~~~-------aG~~VIDlS~~~ 135 (279)
+...++|+||+|++.....+.+..+.. .|..|||++...
T Consensus 98 ~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi 144 (375)
T 1yj8_A 98 ASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGF 144 (375)
T ss_dssp HHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSC
T ss_pred HHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCcc
Confidence 224689999999998777776665543 477899998654
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.014 Score=53.24 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=26.1
Q ss_pred ccccchhhhhccCCCCCCCCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 5 SSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
|||... .-|.--.||+-+.+| +++|.|.||||++|+.|++.|.++++ +++.+.
T Consensus 3 ~~~~~~--~~~~~~~~~~~~~~M-----------~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~ 55 (375)
T 1t2a_A 3 SSHHHH--HHSSGRENKYFQGHM-----------RNVALITGITGQDGSYLAEFLLEKGY---EVHGIV 55 (375)
T ss_dssp ----------------------------------CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred cccccc--cccccccchhhHhhc-----------CcEEEEECCCchHHHHHHHHHHHCCC---EEEEEE
Confidence 455433 335556677776665 15899999999999999999998753 555553
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0019 Score=56.09 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=50.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-cc----CCC--CCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-ED----SFD--GVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~----~~~--~~DvVf~a~g~~ 112 (279)
|+|.|.||||++|+.+++.|.+ ++ +++.+ +|+.... .+ ...|+. .+ .+. .+|+||.+++..
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~---~V~~~-~r~~~~~----~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~ 68 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RH---EVIKV-YNSSEIQ----GG---YKLDLTDFPRLEDFIIKKRPDVIINAAAMT 68 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TS---CEEEE-ESSSCCT----TC---EECCTTSHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CEEEEECCCChhHHHHHHHHhc-CC---eEEEe-cCCCcCC----CC---ceeccCCHHHHHHHHHhcCCCEEEECCccc
Confidence 4799999999999999999984 43 45555 3433211 11 112322 11 123 389999998753
Q ss_pred h------------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 113 I------------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 113 ~------------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
. ...+...+.+.|.++|=.|+..
T Consensus 69 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~ 109 (273)
T 2ggs_A 69 DVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDY 109 (273)
T ss_dssp CHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred ChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecce
Confidence 2 2334445556777877666543
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0012 Score=60.86 Aligned_cols=73 Identities=21% Similarity=0.361 Sum_probs=43.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--eeeCCceeEEee---c-C-ccCCCCCcEEEecCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LSFQDKAYTVEE---L-T-EDSFDGVDIALFSAG 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~~~~~~~~v~~---~-d-~~~~~~~DvVf~a~g 110 (279)
+++||+|+||+|+||..++..|.+.+ ...+++++......+.. +........+.. . + .+.+.++|+||.+.+
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g-~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag 85 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNP-LVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG 85 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCT-TEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCC-CCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 35799999999999999999998763 23566665322221111 111111112221 1 2 234689999999986
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 86 ~ 86 (326)
T 1smk_A 86 V 86 (326)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.014 Score=51.48 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=69.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.||..|+||+|..|+.+.+.+.+ +..+++....+.. . .+ +.++|+++..+-+..+.+++
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~---~~~elv~~id~~~----------~---~~-----l~~~DVvIDFT~P~a~~~~~ 70 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSE---KGHELVLKVDVNG----------V---EE-----LDSPDVVIDFSSPEALPKTV 70 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEEETTE----------E---EE-----CSCCSEEEECSCGGGHHHHH
T ss_pred cceeEEEEecCHHHHHHHHHHhC---CCCEEEEEEcCCC----------c---cc-----ccCCCEEEECCCHHHHHHHH
Confidence 47899999999999999887644 5678776654321 0 11 23679999888888899999
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChH
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCST 173 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~t 173 (279)
..+++.|+.+|--+.-| +++. .+.++... .+..++-.||-+.
T Consensus 71 ~~~~~~g~~~ViGTTG~--~~~~--------~~~l~~~a---~~~~vv~apNfSl 112 (228)
T 1vm6_A 71 DLCKKYRAGLVLGTTAL--KEEH--------LQMLRELS---KEVPVVQAYNFSI 112 (228)
T ss_dssp HHHHHHTCEEEECCCSC--CHHH--------HHHHHHHT---TTSEEEECSCCCH
T ss_pred HHHHHcCCCEEEeCCCC--CHHH--------HHHHHHHH---hhCCEEEeccccH
Confidence 99999999888666555 2110 11222211 1467888888776
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0077 Score=58.55 Aligned_cols=90 Identities=12% Similarity=0.286 Sum_probs=62.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCce---EEEEEeecCCCCceee-eCCceeEEeecCcc--------CCCCCcEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR---SIKMLASKRSAGKQLS-FQDKAYTVEELTED--------SFDGVDIALF 107 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~---~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~--------~~~~~DvVf~ 107 (279)
+||.||| .|-||+.++++|.++ +.+ ++..+ +....++.+. ..+......+++.+ .+.+.|+|+.
T Consensus 14 ~rVlIIG-aGgVG~~va~lla~~--~dv~~~~I~va-D~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVIN 89 (480)
T 2ph5_A 14 NRFVILG-FGCVGQALMPLIFEK--FDIKPSQVTII-AAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLID 89 (480)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHH--BCCCGGGEEEE-ESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEEE
T ss_pred CCEEEEC-cCHHHHHHHHHHHhC--CCCceeEEEEe-ccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEEEE
Confidence 6899999 699999999999987 544 44444 5554443321 11222222233211 2344599999
Q ss_pred cCCCchhhhhHHHHHhCCCEEEEcCC
Q 023678 108 SAGGSISKKFGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 108 a~g~~~s~~~~~~~~~aG~~VIDlS~ 133 (279)
+.....+..++..++++|+.+||.+-
T Consensus 90 ~s~~~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 90 VSIGISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp CCSSSCHHHHHHHHHHHTCEEEESSC
T ss_pred CCccccCHHHHHHHHHcCCCEEECCC
Confidence 99999999999999999999999986
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0094 Score=52.19 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=53.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-cc----CCCCCcEEEecCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-ED----SFDGVDIALFSAGGS 112 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~----~~~~~DvVf~a~g~~ 112 (279)
++++|.|.||||++|+.|++.|.+++ .+++.+ .++..... .........|+. .+ .+.++|+||.+.+..
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G---~~V~~~-~r~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~~ 75 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMA---EILRLA-DLSPLDPA--GPNEECVQCDLADANAVNAMVAGCDGIVHLGGIS 75 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGE---EEEEEE-ESSCCCCC--CTTEEEEECCTTCHHHHHHHHTTCSEEEECCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcC---CEEEEE-ecCCcccc--CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCCc
Confidence 45689999999999999999999864 355444 34322111 111112222332 11 246899999998753
Q ss_pred hh--------------hhhHHHHHhCCC-EEEEcCCC
Q 023678 113 IS--------------KKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 113 ~s--------------~~~~~~~~~aG~-~VIDlS~~ 134 (279)
.. ..+.+.+.+.|. +||=.|+.
T Consensus 76 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~ 112 (267)
T 3rft_A 76 VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSN 112 (267)
T ss_dssp SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcch
Confidence 22 123344456665 66666654
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0021 Score=58.90 Aligned_cols=71 Identities=21% Similarity=0.386 Sum_probs=43.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC--CceeEEee----cCcc-CCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ--DKAYTVEE----LTED-SFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~--~~~~~v~~----~d~~-~~~~~DvVf~a~g~ 111 (279)
|||+|+||+|+||..++..|..+++ ..+++++...+..|...... .....+.. .+.+ .+.++|+||++.|.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~-~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~ 78 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence 5899999999999999999998753 24566663222111111111 11122322 2333 47899999999864
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0018 Score=59.31 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=25.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|||.|.||||++|+.|++.|.++++ .+++.+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~--~~v~~~ 31 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTD--HHIFEV 31 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC--CEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--CEEEEE
Confidence 5899999999999999999998843 344443
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=58.76 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=56.7
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-------CCceeeeCCceeEE--ee-cCccCCCCCcEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------AGKQLSFQDKAYTV--EE-LTEDSFDGVDIAL 106 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-------~G~~~~~~~~~~~v--~~-~d~~~~~~~DvVf 106 (279)
|++|||+|+| .|.+|..+...|.+.++ ++.++. ++. .|..+...+....+ .- .+.++..++|+||
T Consensus 1 M~~mkI~IiG-aG~~G~~~a~~L~~~g~---~V~~~~-r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi 75 (335)
T 3ghy_A 1 MSLTRICIVG-AGAVGGYLGARLALAGE---AINVLA-RGATLQALQTAGLRLTEDGATHTLPVRATHDAAALGEQDVVI 75 (335)
T ss_dssp -CCCCEEEES-CCHHHHHHHHHHHHTTC---CEEEEC-CHHHHHHHHHTCEEEEETTEEEEECCEEESCHHHHCCCSEEE
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHCCC---EEEEEE-ChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHHcCCCCEEE
Confidence 3457999999 59999999999998765 344443 321 12222111111111 11 1223346899999
Q ss_pred ecCCCchhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 107 FSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 107 ~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
+|++.....+.++.+. ..+..||.+..-+
T Consensus 76 lavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 76 VAVKAPALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp ECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred EeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 9999876665555442 3577888877663
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0098 Score=52.76 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=25.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|||.|.||||++|+.+++.|.++++ +++.+
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~---~V~~~ 30 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGL---EVAVL 30 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC---EEEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 4899999999999999999998754 45544
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0031 Score=55.75 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=51.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-cc----CCC--CCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-ED----SFD--GVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~----~~~--~~DvVf~a~g~~ 112 (279)
++|.|.||||++|+.|++.|.++ ++..+++.+. |+.....+. ........|+. .+ .+. ++|+||.+++..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~-~~g~~V~~~~-r~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~ 79 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKL-YGTENVIASD-IRKLNTDVV-NSGPFEVVNALDFNQIEHLVEVHKITDIYLMAALL 79 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHH-HCGGGEEEEE-SCCCSCHHH-HSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCC
T ss_pred ceEEEECCccHHHHHHHHHHHHh-CCCCEEEEEc-CCCcccccc-CCCceEEecCCCHHHHHHHHhhcCCCEEEECCccC
Confidence 67999999999999999999875 0123455553 332221111 11112222332 11 133 789999998753
Q ss_pred hh-----------------hhhHHHHHhCCC-EEEEcCCC
Q 023678 113 IS-----------------KKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 113 ~s-----------------~~~~~~~~~aG~-~VIDlS~~ 134 (279)
.. ..+++.+.+.|+ ++|=.|+.
T Consensus 80 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 119 (312)
T 2yy7_A 80 SATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSI 119 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEG
T ss_pred CCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccH
Confidence 21 233444556777 66655554
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.022 Score=51.75 Aligned_cols=92 Identities=20% Similarity=0.313 Sum_probs=57.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-------CCceeeeCCceeEE--e-ecCccCCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------AGKQLSFQDKAYTV--E-ELTEDSFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-------~G~~~~~~~~~~~v--~-~~d~~~~~~~DvVf~a 108 (279)
++||+|+| .|.+|..+...|.+.+| ++.++ .+.. .|..+...+..... . ..+.+...++|+||+|
T Consensus 19 ~~kI~IiG-aGa~G~~~a~~L~~~G~---~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~vila 93 (318)
T 3hwr_A 19 GMKVAIMG-AGAVGCYYGGMLARAGH---EVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSAVQGADLVLFC 93 (318)
T ss_dssp -CEEEEES-CSHHHHHHHHHHHHTTC---EEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGGGTTCSEEEEC
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHCCC---eEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHcCCCCEEEEE
Confidence 47999999 59999999999988764 44444 2211 12222211111111 1 1123345689999999
Q ss_pred CCCchhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 109 AGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 109 ~g~~~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
++.....+.++.+. ..+..||.+..-+
T Consensus 94 vk~~~~~~~l~~l~~~l~~~~~iv~~~nGi 123 (318)
T 3hwr_A 94 VKSTDTQSAALAMKPALAKSALVLSLQNGV 123 (318)
T ss_dssp CCGGGHHHHHHHHTTTSCTTCEEEEECSSS
T ss_pred cccccHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 99987777776653 3567788877665
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.014 Score=52.21 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+++|.|.||||++|+.|++.|.+++| +++.+
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~---~V~~~ 39 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGY---AVNTT 39 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC---EEEEE
Confidence 36899999999999999999998764 44444
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0037 Score=55.16 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=51.1
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCC--ceeEEeecC-c-cCCC-----CCcEEEecCC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQD--KAYTVEELT-E-DSFD-----GVDIALFSAG 110 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~--~~~~v~~~d-~-~~~~-----~~DvVf~a~g 110 (279)
||.|.||||++|+.|++.|.+++ ..+++.+ ++...+.... ... ...++.+.+ . ..+. ++|+||.+++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g--~~~V~~~-~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~ 77 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKG--ITDILVV-DNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGA 77 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTT--CCCEEEE-ECCSSGGGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred CEEEEcCccHHHHHHHHHHHHCC--CcEEEEE-ccCCCCchhhhcCcceeccccccHHHHHHHHhccccCCCcEEEECcc
Confidence 58999999999999999999885 1344445 3332221110 001 112232211 0 1122 5899999976
Q ss_pred Cch----------------hhhhHHHHHhCCCEEEEcCCC
Q 023678 111 GSI----------------SKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 111 ~~~----------------s~~~~~~~~~aG~~VIDlS~~ 134 (279)
... +..+++.+.+.|+++|=.|+.
T Consensus 78 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~ 117 (310)
T 1eq2_A 78 CSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSA 117 (310)
T ss_dssp CCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEG
T ss_pred cccCcccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeH
Confidence 432 233445555567677766654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0073 Score=46.90 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=41.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC-CceeEEeecC-c-----cCCCCCcEEEecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-DKAYTVEELT-E-----DSFDGVDIALFSA 109 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~-~~~~~v~~~d-~-----~~~~~~DvVf~a~ 109 (279)
+.|+|+|+|+ |.+|+.+.+.|.+.++ ++..+ .++.. -..+... +......+.. . ..+.++|+||.|+
T Consensus 3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~---~v~~~-d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 3 HGMYIIIAGI-GRVGYTLAKSLSEKGH---DIVLI-DIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-ESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC---eEEEE-ECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 3479999996 9999999999988753 44444 33211 0111100 1111111221 1 2256799999999
Q ss_pred CCchhhh
Q 023678 110 GGSISKK 116 (279)
Q Consensus 110 g~~~s~~ 116 (279)
+......
T Consensus 78 ~~~~~~~ 84 (140)
T 1lss_A 78 GKEEVNL 84 (140)
T ss_dssp SCHHHHH
T ss_pred CCchHHH
Confidence 8864433
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.012 Score=53.77 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=26.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
++|.|.||||++|+.|++.|.++++ +++.+.
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~---~V~~~~ 59 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGY---EVHGLI 59 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCC---EEEEEe
Confidence 5899999999999999999998754 555553
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0048 Score=55.94 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=27.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+.++|.|.||||++|+.|++.|.++++ +++.+.
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~ 40 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMGA---TVKGYS 40 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC---eEEEEe
Confidence 347999999999999999999998754 555553
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0028 Score=61.47 Aligned_cols=92 Identities=15% Similarity=0.268 Sum_probs=55.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC--CceeEEeecCccC----CCCCcEEEecCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ--DKAYTVEELTEDS----FDGVDIALFSAG 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~--~~~~~v~~~d~~~----~~~~DvVf~a~g 110 (279)
++++|+||| .|..|+.|.+.|.+++|+ +.+. .|+.. -..+... +..+.... +.++ +..+|+||+|++
T Consensus 14 ~~~~IgvIG-lG~MG~~lA~~La~~G~~---V~v~-~r~~~~~~~l~~~~~~~gi~~~~-s~~e~v~~l~~aDvVil~Vp 87 (480)
T 2zyd_A 14 SKQQIGVVG-MAVMGRNLALNIESRGYT---VSIF-NRSREKTEEVIAENPGKKLVPYY-TVKEFVESLETPRRILLMVK 87 (480)
T ss_dssp -CBSEEEEC-CSHHHHHHHHHHHTTTCC---EEEE-CSSHHHHHHHHHHSTTSCEEECS-SHHHHHHTBCSSCEEEECSC
T ss_pred CCCeEEEEc-cHHHHHHHHHHHHhCCCe---EEEE-eCCHHHHHHHHhhCCCCCeEEeC-CHHHHHhCCCCCCEEEEECC
Confidence 346899999 799999999999988763 3333 33211 0011100 00122221 2211 234899999999
Q ss_pred Cc-hhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 111 GS-ISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 111 ~~-~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
.+ ...+.+..+. +.|..|||.+...
T Consensus 88 ~~~~v~~vl~~l~~~l~~g~iIId~s~g~ 116 (480)
T 2zyd_A 88 AGAGTDAAIDSLKPYLDKGDIIIDGGNTF 116 (480)
T ss_dssp SSSHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 95 5566665553 4688999998765
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.014 Score=55.98 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=26.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+++|.|.||||++|+.|++.|.++ ..+++.+.
T Consensus 150 ~~~VLVTGatG~iG~~l~~~L~~~---g~~V~~l~ 181 (508)
T 4f6l_B 150 LGNTLLTGATGFLGAYLIEALQGY---SHRIYCFI 181 (508)
T ss_dssp CEEEEESCTTSHHHHHHHHHTBTT---EEEEEEEE
T ss_pred CCeEEEECCccchHHHHHHHHHhc---CCEEEEEE
Confidence 478999999999999999999654 45666664
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0063 Score=55.91 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=43.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC----CceEEEEEeecC-------CCCce--eeeC--CceeEEee-cC-ccCCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKR-------SAGKQ--LSFQ--DKAYTVEE-LT-EDSFDG 101 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~----p~~~l~~l~s~~-------s~G~~--~~~~--~~~~~v~~-~d-~~~~~~ 101 (279)
++||+|+||+|+||..++..|..+++ +..+++++ ... ..|.. +... .....+.. .+ .+++.+
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~-Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~ 83 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLL-EIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD 83 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE-CCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTT
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEE-cCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCC
Confidence 57999999999999999999987742 11366665 222 11110 1110 00112222 22 345789
Q ss_pred CcEEEecCCC
Q 023678 102 VDIALFSAGG 111 (279)
Q Consensus 102 ~DvVf~a~g~ 111 (279)
+|+||.+.+.
T Consensus 84 aD~Vi~~ag~ 93 (329)
T 1b8p_A 84 ADVALLVGAR 93 (329)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEEeCCC
Confidence 9999999763
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0015 Score=58.13 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=50.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCch-hhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
|||+||| .|.+|+.+.+.|.+.+| ++... +++. .+.-......+.+.. +. +.+.++|+||.|++... .++.
T Consensus 1 m~i~iiG-~G~mG~~~a~~l~~~g~---~V~~~-~~~~-~~~~~~~~~g~~~~~-~~~~~~~~~Dvvi~~vp~~~~~~~v 73 (296)
T 2gf2_A 1 MPVGFIG-LGNMGNPMAKNLMKHGY---PLIIY-DVFP-DACKEFQDAGEQVVS-SPADVAEKADRIITMLPTSINAIEA 73 (296)
T ss_dssp CCEEEEC-CSTTHHHHHHHHHHTTC---CEEEE-CSST-HHHHHHHTTTCEECS-SHHHHHHHCSEEEECCSSHHHHHHH
T ss_pred CeEEEEe-ccHHHHHHHHHHHHCCC---EEEEE-eCCH-HHHHHHHHcCCeecC-CHHHHHhcCCEEEEeCCCHHHHHHH
Confidence 4799999 69999999999988765 34333 3321 110001011122221 11 22457899999997653 3333
Q ss_pred HHH------HHhCCCEEEEcCC
Q 023678 118 GPI------AVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~~~------~~~aG~~VIDlS~ 133 (279)
... .+..|..|||.++
T Consensus 74 ~~~~~~~~~~l~~~~~vv~~s~ 95 (296)
T 2gf2_A 74 YSGANGILKKVKKGSLLIDSST 95 (296)
T ss_dssp HHSTTSGGGTCCTTCEEEECSC
T ss_pred HhCchhHHhcCCCCCEEEECCC
Confidence 332 2346889999554
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0029 Score=61.07 Aligned_cols=91 Identities=12% Similarity=0.277 Sum_probs=54.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC--CceeEEeecCccC----CCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ--DKAYTVEELTEDS----FDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~--~~~~~v~~~d~~~----~~~~DvVf~a~g~ 111 (279)
++||+||| .|.+|+.+.+.|.+++| ++.+. .++.. -..+... +..+.... +.++ +.++|+||+|++.
T Consensus 5 ~~~IgvIG-~G~mG~~lA~~L~~~G~---~V~v~-dr~~~~~~~l~~~~~~~gi~~~~-s~~e~v~~l~~aDvVilavp~ 78 (474)
T 2iz1_A 5 QANFGVVG-MAVMGKNLALNVESRGY---TVAIY-NRTTSKTEEVFKEHQDKNLVFTK-TLEEFVGSLEKPRRIMLMVQA 78 (474)
T ss_dssp TBSEEEEC-CSHHHHHHHHHHHHTTC---CEEEE-CSSHHHHHHHHHHTTTSCEEECS-SHHHHHHTBCSSCEEEECCCT
T ss_pred CCcEEEEe-eHHHHHHHHHHHHhCCC---EEEEE-cCCHHHHHHHHHhCcCCCeEEeC-CHHHHHhhccCCCEEEEEccC
Confidence 46899999 69999999999998866 33333 33211 0011100 00122211 2211 2348999999999
Q ss_pred c-hhhhhHHHH---HhCCCEEEEcCCCC
Q 023678 112 S-ISKKFGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 112 ~-~s~~~~~~~---~~aG~~VIDlS~~~ 135 (279)
. ...+....+ ++.|..|||.+...
T Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (474)
T 2iz1_A 79 GAATDATIKSLLPLLDIGDILIDGGNTH 106 (474)
T ss_dssp THHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred chHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 6 345555443 34688999998654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0072 Score=47.70 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=41.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecC-cc-----CCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-ED-----SFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d-~~-----~~~~~DvVf~a~g~ 111 (279)
+++|.|+|+ |++|+.+.+.|.+++++ ++.+. ++... ..+...+......+.. ++ .+.++|+||.|++.
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~~---V~~id-~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~ 80 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGKK---VLAVD-KSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD 80 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCC---EEEEE-SCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCe---EEEEE-CCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCC
Confidence 468999996 99999999999987653 44443 22110 0111112122222322 11 24579999999996
Q ss_pred chh
Q 023678 112 SIS 114 (279)
Q Consensus 112 ~~s 114 (279)
...
T Consensus 81 ~~~ 83 (141)
T 3llv_A 81 DEF 83 (141)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0038 Score=60.75 Aligned_cols=92 Identities=13% Similarity=0.271 Sum_probs=56.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeC---CceeEE-eecC--ccCCCCCcEEEecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQ---DKAYTV-EELT--EDSFDGVDIALFSA 109 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~---~~~~~v-~~~d--~~~~~~~DvVf~a~ 109 (279)
.+++|+||| .|.+|..|.+.|.+++| ++... .++. .+ .+... +..+.. .+++ .+.+.++|+||+|+
T Consensus 3 ~~~kIgiIG-lG~MG~~lA~~L~~~G~---~V~v~-dr~~-~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~V 76 (484)
T 4gwg_A 3 AQADIALIG-LAVMGQNLILNMNDHGF---VVCAF-NRTV-SKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLV 76 (484)
T ss_dssp CCBSEEEEC-CSHHHHHHHHHHHHTTC---CEEEE-CSST-HHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECS
T ss_pred CCCEEEEEC-hhHHHHHHHHHHHHCCC---EEEEE-eCCH-HHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEec
Confidence 457899999 79999999999999876 34434 3322 11 11111 111211 1111 11234689999999
Q ss_pred CCc-hhhhhHHHH---HhCCCEEEEcCCCC
Q 023678 110 GGS-ISKKFGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 110 g~~-~s~~~~~~~---~~aG~~VIDlS~~~ 135 (279)
+.+ ...+.+..+ ++.|..|||.|...
T Consensus 77 p~~~~v~~vl~~l~~~L~~g~iIId~st~~ 106 (484)
T 4gwg_A 77 KAGQAVDDFIEKLVPLLDTGDIIIDGGNSE 106 (484)
T ss_dssp CSSHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 997 444444444 35789999998865
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.003 Score=56.47 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=55.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcC-----CCCceEEEEEeecCC--------CCceeeeC-Cce----eEEeecCccCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDR-----DFPYRSIKMLASKRS--------AGKQLSFQ-DKA----YTVEELTEDSFD 100 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~-----~~p~~~l~~l~s~~s--------~G~~~~~~-~~~----~~v~~~d~~~~~ 100 (279)
+|||+|+| .|.+|..+...|.+. +. .++..+ .|.. .|..+... +.. +.+. .+.+...
T Consensus 8 ~m~I~iiG-~G~mG~~~a~~L~~~~~~~~g~--~~V~~~-~r~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 82 (317)
T 2qyt_A 8 PIKIAVFG-LGGVGGYYGAMLALRAAATDGL--LEVSWI-ARGAHLEAIRAAGGLRVVTPSRDFLARPTCVT-DNPAEVG 82 (317)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHHHHTTSS--EEEEEE-CCHHHHHHHHHHTSEEEECSSCEEEECCSEEE-SCHHHHC
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCccccCCC--CCEEEE-EcHHHHHHHHhcCCeEEEeCCCCeEEecceEe-cCccccC
Confidence 47999999 699999999999865 40 355544 3321 12111110 000 0000 1122346
Q ss_pred CCcEEEecCCCchhhhhHHHHHh---CCCEEEEcCCCC
Q 023678 101 GVDIALFSAGGSISKKFGPIAVE---KGSIVVDNSSAF 135 (279)
Q Consensus 101 ~~DvVf~a~g~~~s~~~~~~~~~---aG~~VIDlS~~~ 135 (279)
++|+||.|++.....+.++.+.. .|..||+++..+
T Consensus 83 ~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~ 120 (317)
T 2qyt_A 83 TVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGA 120 (317)
T ss_dssp CEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSS
T ss_pred CCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCC
Confidence 78999999999887777766543 366788876654
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0059 Score=56.43 Aligned_cols=71 Identities=21% Similarity=0.368 Sum_probs=43.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCce--ee----eCCceeEEeecCccCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQ--LS----FQDKAYTVEELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~--~~----~~~~~~~v~~~d~~~~~~~DvVf~a~g 110 (279)
.+||+|+|| |++|..+...|...++- -+++++..... .|.. +. +....+.+..-+.+++.++|+||.+.|
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~-~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag 82 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQGIT-DELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAG 82 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCC-ceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecc
Confidence 589999996 99999999999877421 26666532110 1110 11 111123333323456789999999987
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 83 ~ 83 (326)
T 3pqe_A 83 A 83 (326)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0059 Score=47.57 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=45.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecC-c----c-CCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-E----D-SFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d-~----~-~~~~~DvVf~a~g~ 111 (279)
+.+|.|+|+ |.+|+.+.+.|.+.+++ ++.+ +++... ..+...+......+.. . + .+.++|+||.|++.
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~---v~~~-d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~ 80 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMGHE---VLAV-DINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGA 80 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCC---CEEE-ESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCS
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCE---EEEE-eCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCC
Confidence 357999997 99999999999887643 3334 222100 0010011111111221 1 1 24579999999997
Q ss_pred c-h-hhhhHHHHHhCCC
Q 023678 112 S-I-SKKFGPIAVEKGS 126 (279)
Q Consensus 112 ~-~-s~~~~~~~~~aG~ 126 (279)
. . .......+.+.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~ 97 (144)
T 2hmt_A 81 NIQASTLTTLLLKELDI 97 (144)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHcCC
Confidence 5 2 2334444444553
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.006 Score=55.68 Aligned_cols=70 Identities=16% Similarity=0.298 Sum_probs=43.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee--cC--CCCce--ee----eCCceeEEee-cC--ccCCCCCcEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS--KR--SAGKQ--LS----FQDKAYTVEE-LT--EDSFDGVDIAL 106 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s--~~--s~G~~--~~----~~~~~~~v~~-~d--~~~~~~~DvVf 106 (279)
|||+|+||+|++|+.++..|...++ ..+++++.. .. ..|.. +. +.+.+..+.. .+ .+++.++|+||
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~-~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi 79 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVI 79 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCC-CCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEE
Confidence 5899999999999999999987742 345666632 11 11100 00 1112334443 22 35678999999
Q ss_pred ecCC
Q 023678 107 FSAG 110 (279)
Q Consensus 107 ~a~g 110 (279)
.+.+
T Consensus 80 ~~Ag 83 (313)
T 1hye_A 80 ITSG 83 (313)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 9986
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.013 Score=58.53 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=26.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+++++|.|.||||++|+.|++.|.++++ +++++.
T Consensus 9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~---~V~~~~ 42 (699)
T 1z45_A 9 STSKIVLVTGGAGYIGSHTVVELIENGY---DCVVAD 42 (699)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEE
Confidence 3467999999999999999999998754 555553
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0099 Score=53.99 Aligned_cols=102 Identities=19% Similarity=0.333 Sum_probs=65.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCc--hhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~--~s~ 115 (279)
+..++.|+|++..||+-+.++|.+++ ....+....+ +. .++ .+....+|+||.|+|.. +..
T Consensus 157 ~gk~vvVvG~s~iVG~p~A~lL~~~g-~~atVtv~h~-~t--------------~~L-~~~~~~ADIVI~Avg~p~~I~~ 219 (281)
T 2c2x_A 157 AGAHVVVIGRGVTVGRPLGLLLTRRS-ENATVTLCHT-GT--------------RDL-PALTRQADIVVAAVGVAHLLTA 219 (281)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHTSTT-TCCEEEEECT-TC--------------SCH-HHHHTTCSEEEECSCCTTCBCG
T ss_pred CCCEEEEECCCcHHHHHHHHHHhcCC-CCCEEEEEEC-ch--------------hHH-HHHHhhCCEEEECCCCCcccCH
Confidence 35799999998899999999998751 0344443322 11 011 12346899999999854 444
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
++. +.|+.|||.+-. |.++. .+-.|+ +..+.. ...|--.||
T Consensus 220 ~~v----k~GavVIDVgi~-r~~~g---lvGDVd-~~v~~~-----a~~iTPVPG 260 (281)
T 2c2x_A 220 DMV----RPGAAVIDVGVS-RTDDG---LVGDVH-PDVWEL-----AGHVSPNPG 260 (281)
T ss_dssp GGS----CTTCEEEECCEE-EETTE---EEESBC-GGGGGT-----CSEEECSSS
T ss_pred HHc----CCCcEEEEccCC-CCCCC---ccCccc-cchhhh-----eeeecCCCC
Confidence 553 679999999875 54432 567787 666541 244555564
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0069 Score=55.06 Aligned_cols=71 Identities=23% Similarity=0.314 Sum_probs=43.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec-CC---CCce--eee---CCceeEEeecCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RS---AGKQ--LSF---QDKAYTVEELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~-~s---~G~~--~~~---~~~~~~v~~~d~~~~~~~DvVf~a~g 110 (279)
|||+|+||+|++|..++..|...++ ..+++++..+ .. .|.. +.. ...+..+..-+.+++.++|+||.+.+
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~-~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag 79 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAG 79 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCC
Confidence 5899999999999999999877642 3456665320 11 0100 000 01233443223456789999999987
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 80 ~ 80 (303)
T 1o6z_A 80 I 80 (303)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0031 Score=57.41 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=53.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecCc-cCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~ 115 (279)
|.||++|| .|..|..+.+.|.+.+|+ +... .| +..+ .+...+ ....+ ++ +...++|+||.|++...+.
T Consensus 3 M~kIgfIG-lG~MG~~mA~~L~~~G~~---v~v~-dr-~~~~~~~l~~~G--a~~a~-s~~e~~~~~dvv~~~l~~~~~v 73 (300)
T 3obb_A 3 MKQIAFIG-LGHMGAPMATNLLKAGYL---LNVF-DL-VQSAVDGLVAAG--ASAAR-SARDAVQGADVVISMLPASQHV 73 (300)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCE---EEEE-CS-SHHHHHHHHHTT--CEECS-SHHHHHTTCSEEEECCSCHHHH
T ss_pred cCEEEEee-ehHHHHHHHHHHHhCCCe---EEEE-cC-CHHHHHHHHHcC--CEEcC-CHHHHHhcCCceeecCCchHHH
Confidence 56999999 899999999999988763 4444 32 2111 111111 11211 12 2346799999999987554
Q ss_pred hhHH-------HHHhCCCEEEEcCCCC
Q 023678 116 KFGP-------IAVEKGSIVVDNSSAF 135 (279)
Q Consensus 116 ~~~~-------~~~~aG~~VIDlS~~~ 135 (279)
+-+- ..+..|..|||.|...
T Consensus 74 ~~V~~~~~g~~~~~~~g~iiId~sT~~ 100 (300)
T 3obb_A 74 EGLYLDDDGLLAHIAPGTLVLECSTIA 100 (300)
T ss_dssp HHHHHSSSSSTTSCCC-CEEEECSCCC
T ss_pred HHHHhchhhhhhcCCCCCEEEECCCCC
Confidence 3321 1234578899998753
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0036 Score=60.64 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=25.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++|||+||| .||+|..+...|.+++ +..++..+
T Consensus 8 ~~mkI~VIG-~G~vG~~~A~~La~~g-~g~~V~~~ 40 (481)
T 2o3j_A 8 KVSKVVCVG-AGYVGGPTCAMIAHKC-PHITVTVV 40 (481)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHHC-TTSEEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcC-CCCEEEEE
Confidence 357999999 7999999999998762 23355555
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0082 Score=53.93 Aligned_cols=92 Identities=11% Similarity=0.200 Sum_probs=55.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ce----ee-------eCC----------------ceeE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQ----LS-------FQD----------------KAYT 90 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~----~~-------~~~----------------~~~~ 90 (279)
++||+|||+ |.+|..+...|.+++| ++.++ +++..- .. +. ..+ ..+.
T Consensus 15 ~~~I~VIG~-G~mG~~iA~~la~~G~---~V~~~-d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~ 89 (302)
T 1f0y_A 15 VKHVTVIGG-GLMGAGIAQVAAATGH---TVVLV-DQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89 (302)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceE
Confidence 468999995 9999999999998765 44444 332100 00 00 000 0122
Q ss_pred EeecCcc-CCCCCcEEEecCCCchh--hhhHHHH---HhCCCEEEEcCCCCC
Q 023678 91 VEELTED-SFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFR 136 (279)
Q Consensus 91 v~~~d~~-~~~~~DvVf~a~g~~~s--~~~~~~~---~~aG~~VIDlS~~~R 136 (279)
+.. +.+ .+.++|+||.|++.... +++..++ +..++.|+++++...
T Consensus 90 ~~~-~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~ 140 (302)
T 1f0y_A 90 TST-DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQ 140 (302)
T ss_dssp EES-CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC
T ss_pred Eec-CHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC
Confidence 221 222 46789999999987642 3444443 235778888887763
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.005 Score=56.39 Aligned_cols=74 Identities=16% Similarity=0.317 Sum_probs=45.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceee------eCCceeEEeecCccCCCCCcEEEec
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLS------FQDKAYTVEELTEDSFDGVDIALFS 108 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~------~~~~~~~v~~~d~~~~~~~DvVf~a 108 (279)
|+++||+|+|| |.+|..++..|..+++ ..+++++.... ..|.... +.+.+..+..-+.+++.++|+|+++
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~-~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ 81 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSI-VDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVIC 81 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCS-CSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEEC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEEC
Confidence 34579999998 9999999998887642 24566653211 1111010 1112334443234568899999999
Q ss_pred CCCc
Q 023678 109 AGGS 112 (279)
Q Consensus 109 ~g~~ 112 (279)
.|..
T Consensus 82 ag~~ 85 (317)
T 3d0o_A 82 AGAA 85 (317)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.005 Score=59.65 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=54.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-------CC-ceeeeCCc-----------eeEEeecCc-cC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------AG-KQLSFQDK-----------AYTVEELTE-DS 98 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-------~G-~~~~~~~~-----------~~~v~~~d~-~~ 98 (279)
.|||+||| +||+|..+...|.+.+| ++..+ .++. .+ .++...+. .+.+.. +. +.
T Consensus 8 ~~~I~VIG-~G~vG~~lA~~la~~G~---~V~~~-d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~tt-d~~~a 81 (478)
T 2y0c_A 8 SMNLTIIG-SGSVGLVTGACLADIGH---DVFCL-DVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFST-DIEAA 81 (478)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEEC-CHHHH
T ss_pred CceEEEEC-cCHHHHHHHHHHHhCCC---EEEEE-ECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEEC-CHHHH
Confidence 48999999 79999999999998765 34444 2221 11 11111110 122221 22 23
Q ss_pred CCCCcEEEecCCC----------chhhhhHHHH---HhCCCEEEEcCC
Q 023678 99 FDGVDIALFSAGG----------SISKKFGPIA---VEKGSIVVDNSS 133 (279)
Q Consensus 99 ~~~~DvVf~a~g~----------~~s~~~~~~~---~~aG~~VIDlS~ 133 (279)
+.++|+||.|+|+ ....+.+..+ +..|..||+.|.
T Consensus 82 ~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~ST 129 (478)
T 2y0c_A 82 VAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKST 129 (478)
T ss_dssp HHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred hhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 4578999999988 4444444433 456889999885
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.0014 Score=56.08 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.+||+||| .|.+|+.+.+.|.+.++ ++..+ +|+..-..+... ...+.+. .+.+.++|+||+|++.....+..
T Consensus 19 ~~~I~iIG-~G~mG~~la~~L~~~G~---~V~~~-~r~~~~~~~~~~--g~~~~~~-~~~~~~aDvVilav~~~~~~~v~ 90 (201)
T 2yjz_A 19 QGVVCIFG-TGDFGKSLGLKMLQCGY---SVVFG-SRNPQVSSLLPR--GAEVLCY-SEAASRSDVIVLAVHREHYDFLA 90 (201)
Confidence 46899999 69999999999987654 33333 333221111111 1112111 23356799999999987555443
Q ss_pred HHH--HhCCCEEEEcCCCCC
Q 023678 119 PIA--VEKGSIVVDNSSAFR 136 (279)
Q Consensus 119 ~~~--~~aG~~VIDlS~~~R 136 (279)
.+ ...|..|||.+....
T Consensus 91 -~l~~~~~~~ivI~~~~G~~ 109 (201)
T 2yjz_A 91 -ELADSLKGRVLIDVSNNQK 109 (201)
Confidence 22 235778899887663
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0019 Score=62.20 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=24.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+|||+||| +|++|..+...|.+.+ +..++..+
T Consensus 5 ~mkI~VIG-~G~mG~~lA~~La~~g-~G~~V~~~ 36 (467)
T 2q3e_A 5 IKKICCIG-AGYVGGPTCSVIAHMC-PEIRVTVV 36 (467)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHHC-TTSEEEEE
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhcC-CCCEEEEE
Confidence 47999999 7999999999998763 13355544
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0023 Score=59.63 Aligned_cols=73 Identities=12% Similarity=0.258 Sum_probs=42.7
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCce--ee---eCCceeEEeecC-ccCCCCCcEEEec
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQ--LS---FQDKAYTVEELT-EDSFDGVDIALFS 108 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~--~~---~~~~~~~v~~~d-~~~~~~~DvVf~a 108 (279)
|+++||+|+||+|+||..+...|...+. .-+++++...+. .|.. +. +....+.+.. + .+++.++|+||.+
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~-d~~~al~dADvVvit 83 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTS-DIKEALTDAKYIVSS 83 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEES-CHHHHHTTEEEEEEC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcC-CHHHHhCCCCEEEEc
Confidence 3457999999999999999988777643 125555532111 1110 10 1111233321 2 2357899999999
Q ss_pred CCC
Q 023678 109 AGG 111 (279)
Q Consensus 109 ~g~ 111 (279)
.|.
T Consensus 84 aG~ 86 (343)
T 3fi9_A 84 GGA 86 (343)
T ss_dssp CC-
T ss_pred cCC
Confidence 764
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.011 Score=50.59 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=27.9
Q ss_pred cCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 35 YQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 35 ~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~---~V~~~ 37 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGA---KVVAV 37 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEE
Confidence 334567999999999999999999998754 45444
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.011 Score=54.62 Aligned_cols=72 Identities=14% Similarity=0.298 Sum_probs=44.7
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCce--eee----CCceeEEe-ecCccCCCCCcEEEe
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQ--LSF----QDKAYTVE-ELTEDSFDGVDIALF 107 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~--~~~----~~~~~~v~-~~d~~~~~~~DvVf~ 107 (279)
|+++||+|+|| |.+|..+...|..+++. +++++..... .|.. +.. ......+. ..+.+++.++|+||.
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~--~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~~a~~~aDiVIi 81 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELG--DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDYAAIEGADVVIV 81 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSGGGGTTCSEEEE
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCC--eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCHHHHCCCCEEEE
Confidence 55689999997 99999999999888652 6666632211 1111 110 01122333 223467889999999
Q ss_pred cCCC
Q 023678 108 SAGG 111 (279)
Q Consensus 108 a~g~ 111 (279)
+.|.
T Consensus 82 aag~ 85 (324)
T 3gvi_A 82 TAGV 85 (324)
T ss_dssp CCSC
T ss_pred ccCc
Confidence 9863
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.012 Score=54.26 Aligned_cols=72 Identities=15% Similarity=0.319 Sum_probs=45.0
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCce--eee----CCceeEEe-ecCccCCCCCcEEEe
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQ--LSF----QDKAYTVE-ELTEDSFDGVDIALF 107 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~--~~~----~~~~~~v~-~~d~~~~~~~DvVf~ 107 (279)
|+++||+|+|| |.+|..+...|..+++. +++++..... .|.. +.. ......+. ..+.+++.++|+||.
T Consensus 3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~--~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi 79 (321)
T 3p7m_A 3 MARKKITLVGA-GNIGGTLAHLALIKQLG--DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIV 79 (321)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEE
Confidence 45679999995 99999999999887542 6666632221 1111 111 01123333 234567889999999
Q ss_pred cCCC
Q 023678 108 SAGG 111 (279)
Q Consensus 108 a~g~ 111 (279)
+.|.
T Consensus 80 ~ag~ 83 (321)
T 3p7m_A 80 TAGV 83 (321)
T ss_dssp CCSC
T ss_pred cCCc
Confidence 9764
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.024 Score=54.47 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=54.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-------Cce-eeeCC-----------ceeEEeecCc-cC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------GKQ-LSFQD-----------KAYTVEELTE-DS 98 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-------G~~-~~~~~-----------~~~~v~~~d~-~~ 98 (279)
..||+||| .||+|..+...|.+.+| ++..+ .++.. |.. +...+ ..+.+. .+. +.
T Consensus 8 ~~~~~vIG-lG~vG~~~A~~La~~G~---~V~~~-D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~t-td~~ea 81 (446)
T 4a7p_A 8 SVRIAMIG-TGYVGLVSGACFSDFGH---EVVCV-DKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFT-TDLAEG 81 (446)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEE-SCHHHH
T ss_pred ceEEEEEc-CCHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEE-CCHHHH
Confidence 47899999 79999999999998865 44444 32211 111 10111 012232 122 34
Q ss_pred CCCCcEEEecCCCch-----------hhhhHHHH---HhCCCEEEEcCCC
Q 023678 99 FDGVDIALFSAGGSI-----------SKKFGPIA---VEKGSIVVDNSSA 134 (279)
Q Consensus 99 ~~~~DvVf~a~g~~~-----------s~~~~~~~---~~aG~~VIDlS~~ 134 (279)
..++|++|.|+|+.. -++.+... +..|..||+.|.-
T Consensus 82 ~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv 131 (446)
T 4a7p_A 82 VKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTV 131 (446)
T ss_dssp HTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCC
T ss_pred HhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 578999999977653 23333333 3578899998853
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.02 Score=48.74 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=27.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
++++|.|.||+|.+|+++++.|.+++. ..+++++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~-~~~V~~~~ 36 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKN-IRHIIATA 36 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTT-CCEEEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCC-CcEEEEEe
Confidence 456899999999999999999998741 14555553
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.036 Score=50.18 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=56.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC------Cceeee-CCceeEEee----cCccCC-CCCcEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA------GKQLSF-QDKAYTVEE----LTEDSF-DGVDIALF 107 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~------G~~~~~-~~~~~~v~~----~d~~~~-~~~DvVf~ 107 (279)
|||+|+| .|.+|..+...|.+.++ ++.++ .|+.. |-.+.. ...+..+.. .+.++. .++|+||+
T Consensus 3 mkI~IiG-aGaiG~~~a~~L~~~g~---~V~~~-~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVil 77 (320)
T 3i83_A 3 LNILVIG-TGAIGSFYGALLAKTGH---CVSVV-SRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLL 77 (320)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHTTC---EEEEE-CSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEE
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCC---eEEEE-eCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEE
Confidence 7999999 59999999999988754 45545 34321 111111 111122211 122334 37999999
Q ss_pred cCCCchhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 108 SAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 108 a~g~~~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
|++.....+.++.+. ..+..||.+..-+
T Consensus 78 avK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi 108 (320)
T 3i83_A 78 CIKVVEGADRVGLLRDAVAPDTGIVLISNGI 108 (320)
T ss_dssp CCCCCTTCCHHHHHTTSCCTTCEEEEECSSS
T ss_pred ecCCCChHHHHHHHHhhcCCCCEEEEeCCCC
Confidence 999988777776664 3456777776654
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0065 Score=56.63 Aligned_cols=74 Identities=26% Similarity=0.391 Sum_probs=44.7
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCCc------eEEEEEeecCC----CCcee--e---eCC-ceeEEeecCccCC
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPY------RSIKMLASKRS----AGKQL--S---FQD-KAYTVEELTEDSF 99 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~------~~l~~l~s~~s----~G~~~--~---~~~-~~~~v~~~d~~~~ 99 (279)
+|+..||+|+||+|.||+.|.-+|... +. .+|+++--... .|... . +.. ..+.+..-+.+++
T Consensus 21 s~~~vKVaViGAaG~IG~~la~~la~~--~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~ 98 (345)
T 4h7p_A 21 SMSAVKVAVTGAAGQIGYALVPLIARG--ALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAF 98 (345)
T ss_dssp -CCCEEEEEESTTSHHHHHHHHHHHHT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHT
T ss_pred CCCCCEEEEECcCcHHHHHHHHHHHhc--cccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHh
Confidence 345679999999999999999888766 33 36777743221 11111 1 111 1122222113457
Q ss_pred CCCcEEEecCCC
Q 023678 100 DGVDIALFSAGG 111 (279)
Q Consensus 100 ~~~DvVf~a~g~ 111 (279)
.++|+|+.+.|.
T Consensus 99 ~~advVvi~aG~ 110 (345)
T 4h7p_A 99 DGVAIAIMCGAF 110 (345)
T ss_dssp TTCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 899999998873
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.018 Score=52.32 Aligned_cols=92 Identities=21% Similarity=0.376 Sum_probs=61.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCc--hhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~--~s~ 115 (279)
+..++.|+|++|.+|+-+..+|.+.+ ..+....+ +. + ++ .+....+|+||.|+|.. +..
T Consensus 159 ~Gk~vvVvGrs~iVG~p~A~lL~~~g---AtVtv~h~-~t--~------------~L-~~~~~~ADIVI~Avg~p~~I~~ 219 (285)
T 3p2o_A 159 EGKDAVIIGASNIVGRPMATMLLNAG---ATVSVCHI-KT--K------------DL-SLYTRQADLIIVAAGCVNLLRS 219 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTT---CEEEEECT-TC--S------------CH-HHHHTTCSEEEECSSCTTCBCG
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeC-Cc--h------------hH-HHHhhcCCEEEECCCCCCcCCH
Confidence 35799999999999999999998863 34444432 11 0 11 12346789999999853 344
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
++ .+.|+.|||.+.. |.+++ -.+-.|+-+..+.
T Consensus 220 ~~----vk~GavVIDVgi~-~~~~g--kl~GDVdf~~v~~ 252 (285)
T 3p2o_A 220 DM----VKEGVIVVDVGIN-RLESG--KIVGDVDFEEVSK 252 (285)
T ss_dssp GG----SCTTEEEEECCCE-ECTTS--CEECSBCHHHHTT
T ss_pred HH----cCCCeEEEEeccC-cccCC--CEeccccHHHHHh
Confidence 44 4789999999865 44433 2556677666653
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.048 Score=49.19 Aligned_cols=91 Identities=16% Similarity=0.339 Sum_probs=55.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC------CceeeeCCceeEEeec----CccCCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA------GKQLSFQDKAYTVEEL----TEDSFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~------G~~~~~~~~~~~v~~~----d~~~~~~~DvVf~a~ 109 (279)
|||+|+| .|.+|..+...|.+.++ ++.++ .|+.. |..+........+..+ +.+...++|+||+|+
T Consensus 3 mkI~IiG-aGaiG~~~a~~L~~~g~---~V~~~-~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~D~vilav 77 (312)
T 3hn2_A 3 LRIAIVG-AGALGLYYGALLQRSGE---DVHFL-LRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEEIGPMDLVLVGL 77 (312)
T ss_dssp -CEEEEC-CSTTHHHHHHHHHHTSC---CEEEE-CSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHHHCCCSEEEECC
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC---eEEEE-EcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHHcCCCCEEEEec
Confidence 6899999 59999999999988765 34444 34321 1111111111111111 122346789999999
Q ss_pred CCchhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 110 GGSISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 110 g~~~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
+.....+.++.+. ..+..||.+..-+
T Consensus 78 k~~~~~~~l~~l~~~l~~~~~iv~l~nGi 106 (312)
T 3hn2_A 78 KTFANSRYEELIRPLVEEGTQILTLQNGL 106 (312)
T ss_dssp CGGGGGGHHHHHGGGCCTTCEEEECCSSS
T ss_pred CCCCcHHHHHHHHhhcCCCCEEEEecCCC
Confidence 9988877777664 3466777766554
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.014 Score=51.75 Aligned_cols=88 Identities=16% Similarity=0.239 Sum_probs=49.7
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-cc----CCC--CCcEEEecCCCch
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-ED----SFD--GVDIALFSAGGSI 113 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~----~~~--~~DvVf~a~g~~~ 113 (279)
||.|.||||++|+.|++.|.++ ++..+++.+. ++..... +......|+. .+ .+. ++|+||.+++...
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~-~~g~~V~~~~-r~~~~~~----~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~ 74 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEK-YGKKNVIASD-IVQRDTG----GIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILS 74 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHH-HCGGGEEEEE-SSCCCCT----TCCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCH
T ss_pred CEEEEcCCcHHHHHHHHHHHHh-cCCCEEEEec-CCCcccc----CceEEEecCCCHHHHHHHHhhcCCcEEEECCcccC
Confidence 5899999999999999999875 0123455453 3322111 1112222332 11 123 7999999987532
Q ss_pred -----------------hhhhHHHHHhCCC-EEEEcCCC
Q 023678 114 -----------------SKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 114 -----------------s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
+..+++.+.+.|+ ++|=.|+.
T Consensus 75 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~ 113 (317)
T 3ajr_A 75 AKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTI 113 (317)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCH
Confidence 1233444556777 66655554
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.027 Score=50.96 Aligned_cols=91 Identities=23% Similarity=0.418 Sum_probs=61.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCc--hhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~--~s~ 115 (279)
+..++.|+|+++.+|+-+.++|.+.+ ..+....++ . + ++ .+....+|+||.|+|.. +..
T Consensus 149 ~Gk~vvVvG~s~iVG~plA~lL~~~g---AtVtv~~~~-t--~------------~L-~~~~~~ADIVI~Avg~p~~I~~ 209 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRPLSMMLLNRN---YTVSVCHSK-T--K------------DI-GSMTRSSKIVVVAVGRPGFLNR 209 (276)
T ss_dssp CSCEEEEECCCTTTHHHHHHHHHHTT---CEEEEECTT-C--S------------CH-HHHHHHSSEEEECSSCTTCBCG
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHCC---CeEEEEeCC-c--c------------cH-HHhhccCCEEEECCCCCccccH
Confidence 45799999999999999999998863 344444321 1 0 00 12245789999999863 444
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
++ .+.|+.|||.+.+. .++ -.+-.|+-+..+.
T Consensus 210 ~~----vk~GavVIDvgi~~--~~g--kl~GDVdf~~v~~ 241 (276)
T 3ngx_A 210 EM----VTPGSVVIDVGINY--VND--KVVGDANFEDLSE 241 (276)
T ss_dssp GG----CCTTCEEEECCCEE--ETT--EEECSBCHHHHHT
T ss_pred hh----ccCCcEEEEeccCc--cCC--ceeccccHHHHhh
Confidence 44 47899999998774 322 3566777776664
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0072 Score=58.44 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=54.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC-C-----ceeEEeecCccC----CCCCcEEEec
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-D-----KAYTVEELTEDS----FDGVDIALFS 108 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~-~-----~~~~v~~~d~~~----~~~~DvVf~a 108 (279)
|||+||| .|.+|+.+.+.|.+++|. +.++ .++.. -..+... + ..+... .+.++ +.++|+||.|
T Consensus 2 MkIgVIG-~G~mG~~lA~~La~~G~~---V~v~-dr~~~~~~~l~~~~g~~~~~~~i~~~-~~~~e~v~~l~~aDvVila 75 (478)
T 1pgj_A 2 MDVGVVG-LGVMGANLALNIAEKGFK---VAVF-NRTYSKSEEFMKANASAPFAGNLKAF-ETMEAFAASLKKPRKALIL 75 (478)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCC---EEEE-CSSHHHHHHHHHHTTTSTTGGGEEEC-SCHHHHHHHBCSSCEEEEC
T ss_pred CEEEEEC-hHHHHHHHHHHHHHCCCE---EEEE-eCCHHHHHHHHHhcCCCCCCCCeEEE-CCHHHHHhcccCCCEEEEe
Confidence 5799999 699999999999988763 3333 33211 0011100 1 112221 12222 2358999999
Q ss_pred CCCc-hhhhhHHHH---HhCCCEEEEcCCCC
Q 023678 109 AGGS-ISKKFGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 109 ~g~~-~s~~~~~~~---~~aG~~VIDlS~~~ 135 (279)
++.. ...+.+..+ ++.|..|||.+...
T Consensus 76 Vp~~~~v~~vl~~l~~~l~~g~iIId~sng~ 106 (478)
T 1pgj_A 76 VQAGAATDSTIEQLKKVFEKGDILVDTGNAH 106 (478)
T ss_dssp CCCSHHHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred cCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 9996 445555443 35788999988654
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0094 Score=57.61 Aligned_cols=90 Identities=11% Similarity=0.225 Sum_probs=54.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee-C--CceeEEeecCccC----CCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-Q--DKAYTVEELTEDS----FDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~-~--~~~~~v~~~d~~~----~~~~DvVf~a~g~ 111 (279)
+||+||| .|.+|+.+.+.|.+++|+ +.++ .++.. -..+.. . +..+... .+.++ +.++|+||+|++.
T Consensus 3 m~IgvIG-~G~mG~~lA~~La~~G~~---V~v~-dr~~~~~~~l~~~~~~g~gi~~~-~~~~e~v~~l~~aDvVilaVp~ 76 (482)
T 2pgd_A 3 ADIALIG-LAVMGQNLILNMNDHGFV---VCAF-NRTVSKVDDFLANEAKGTKVLGA-HSLEEMVSKLKKPRRIILLVKA 76 (482)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCC---EEEE-CSSTHHHHHHHHTTTTTSSCEEC-SSHHHHHHHBCSSCEEEECSCT
T ss_pred CeEEEEC-hHHHHHHHHHHHHHCCCe---EEEE-eCCHHHHHHHHhccccCCCeEEe-CCHHHHHhhccCCCEEEEeCCC
Confidence 5899999 699999999999988763 3333 33211 011111 0 0112221 12222 2479999999999
Q ss_pred c-hhhhhHHHH---HhCCCEEEEcCCCC
Q 023678 112 S-ISKKFGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 112 ~-~s~~~~~~~---~~aG~~VIDlS~~~ 135 (279)
. ...+.+..+ ++.|..|||.+...
T Consensus 77 ~~~v~~vl~~l~~~l~~g~iII~~s~~~ 104 (482)
T 2pgd_A 77 GQAVDNFIEKLVPLLDIGDIIIDGGNSE 104 (482)
T ss_dssp THHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred hHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 6 455555443 35688999987654
|
| >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.036 Score=51.43 Aligned_cols=95 Identities=12% Similarity=0.078 Sum_probs=64.3
Q ss_pred CCEEEEECcCcHHHHHHHHH--HHcCCCCceEEEEEeecCCCC--ceeeeCCce--eEEee-cCc--cCCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSV--LSDRDFPYRSIKMLASKRSAG--KQLSFQDKA--YTVEE-LTE--DSFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~l--L~~~~~p~~~l~~l~s~~s~G--~~~~~~~~~--~~v~~-~d~--~~~~~~DvVf~a~ 109 (279)
..||.|.|+||..++.+++. +.++ +..+++...+++..| +.+.++..+ +.+.+ ++. +...++|+++.++
T Consensus 10 ~tkviV~G~~Gk~~~~ml~~~~~~~r--~~~~vVagV~P~~~g~~~~v~~G~~~~Gvpvy~sv~ea~~~~p~~DlaVi~v 87 (334)
T 3mwd_B 10 HTKAIVWGMQTRAVQGMLDFDYVCSR--DEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEVDVLINFA 87 (334)
T ss_dssp TCCEEEESCCHHHHHHHHHHHHHTTC--SSCSEEEEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTCCEEEECC
T ss_pred CCeEEEECCchHHHHHHHHhcccccC--CCceEEEEEcCCCCCccceEeccCccCCceeeCCHHHHhhcCCCCcEEEEec
Confidence 47899999999988888876 5666 777888888877765 555444333 33332 211 1112689999999
Q ss_pred CCchhhhhHHHHHh-CCCE-EEEcCCCC
Q 023678 110 GGSISKKFGPIAVE-KGSI-VVDNSSAF 135 (279)
Q Consensus 110 g~~~s~~~~~~~~~-aG~~-VIDlS~~~ 135 (279)
+...+...+.++++ +|++ ||=+|.-|
T Consensus 88 p~~~a~~ai~ea~~~~Gv~~vViiT~G~ 115 (334)
T 3mwd_B 88 SLRSAYDSTMETMNYAQIRTIAIIAEGI 115 (334)
T ss_dssp CTTTHHHHHHHHTTSTTCCEEEECCSCC
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 99877666556666 8985 45467766
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.038 Score=51.48 Aligned_cols=91 Identities=12% Similarity=0.185 Sum_probs=53.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcC-CCCceEEEEEee--cC---------CCCceee--eC-CceeEE------eecCc-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLAS--KR---------SAGKQLS--FQ-DKAYTV------EELTE- 96 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~-~~p~~~l~~l~s--~~---------s~G~~~~--~~-~~~~~v------~~~d~- 96 (279)
+|||+|+|+ |.+|..+...|.++ +| ++.++.. ++ ..|..+. .. +..... ...+.
T Consensus 2 ~mkI~ViGa-G~~G~~~a~~La~~~G~---~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (404)
T 3c7a_A 2 TVKVCVCGG-GNGAHTLSGLAASRDGV---EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPE 77 (404)
T ss_dssp CEEEEEECC-SHHHHHHHHHHTTSTTE---EEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHH
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCCC---EEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHH
Confidence 369999995 99999999999764 43 5554430 21 0111111 00 100110 01122
Q ss_pred cCCCCCcEEEecCCCchhhhhHHHHH---hCCCEEEEcCC
Q 023678 97 DSFDGVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSS 133 (279)
Q Consensus 97 ~~~~~~DvVf~a~g~~~s~~~~~~~~---~aG~~VIDlS~ 133 (279)
+...++|+||+|++.....+.++.+. ..+..||++.+
T Consensus 78 ~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~ 117 (404)
T 3c7a_A 78 IAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPS 117 (404)
T ss_dssp HHHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTC
T ss_pred HHhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 22467999999999988777776654 34778888543
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0087 Score=53.95 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=52.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeec-C-ccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEEL-T-EDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~-d-~~~~~~~DvVf~a~g~~~s~ 115 (279)
.++|+|+| .|.+|+.+.+.|...++ ++.++ +++... ......+ ..+.+. + .+.+.++|+|+.|++.....
T Consensus 157 g~~v~IiG-~G~iG~~~a~~l~~~G~---~V~~~-d~~~~~~~~~~~~g--~~~~~~~~l~~~l~~aDvVi~~~p~~~i~ 229 (300)
T 2rir_A 157 GSQVAVLG-LGRTGMTIARTFAALGA---NVKVG-ARSSAHLARITEMG--LVPFHTDELKEHVKDIDICINTIPSMILN 229 (300)
T ss_dssp TSEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-ESSHHHHHHHHHTT--CEEEEGGGHHHHSTTCSEEEECCSSCCBC
T ss_pred CCEEEEEc-ccHHHHHHHHHHHHCCC---EEEEE-ECCHHHHHHHHHCC--CeEEchhhHHHHhhCCCEEEECCChhhhC
Confidence 57999999 59999999999987643 55444 332210 0000011 112111 1 23357899999999975432
Q ss_pred hhHHHHHhCCCEEEEcCC
Q 023678 116 KFGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~ 133 (279)
+-.-...+.|..+||.+.
T Consensus 230 ~~~~~~mk~g~~lin~a~ 247 (300)
T 2rir_A 230 QTVLSSMTPKTLILDLAS 247 (300)
T ss_dssp HHHHTTSCTTCEEEECSS
T ss_pred HHHHHhCCCCCEEEEEeC
Confidence 222233467899999874
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.012 Score=51.69 Aligned_cols=94 Identities=15% Similarity=0.241 Sum_probs=59.6
Q ss_pred CCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee--CCceeEEe--ecCccC
Q 023678 23 RTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTVE--ELTEDS 98 (279)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~--~~~~~~v~--~~d~~~ 98 (279)
+.-|+|-.++ ..+|.||| .|-+|...++.|.+.+ .++.+++ ++. ...+.. ....+.+. ++++++
T Consensus 21 ~~~Pifl~L~------gk~VLVVG-gG~va~~ka~~Ll~~G---A~VtVva-p~~-~~~l~~l~~~~~i~~i~~~~~~~d 88 (223)
T 3dfz_A 21 HMYTVMLDLK------GRSVLVVG-GGTIATRRIKGFLQEG---AAITVVA-PTV-SAEINEWEAKGQLRVKRKKVGEED 88 (223)
T ss_dssp -CCEEEECCT------TCCEEEEC-CSHHHHHHHHHHGGGC---CCEEEEC-SSC-CHHHHHHHHTTSCEEECSCCCGGG
T ss_pred CccccEEEcC------CCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEEC-CCC-CHHHHHHHHcCCcEEEECCCCHhH
Confidence 3567776555 57899999 5999999999998864 3444553 322 111110 01122332 344567
Q ss_pred CCCCcEEEecCCCchhhhhHHHHHhCCCEE
Q 023678 99 FDGVDIALFSAGGSISKKFGPIAVEKGSIV 128 (279)
Q Consensus 99 ~~~~DvVf~a~g~~~s~~~~~~~~~aG~~V 128 (279)
+.++|+||.|++.......+..+++.|+.|
T Consensus 89 L~~adLVIaAT~d~~~N~~I~~~ak~gi~V 118 (223)
T 3dfz_A 89 LLNVFFIVVATNDQAVNKFVKQHIKNDQLV 118 (223)
T ss_dssp SSSCSEEEECCCCTHHHHHHHHHSCTTCEE
T ss_pred hCCCCEEEECCCCHHHHHHHHHHHhCCCEE
Confidence 889999999999876655555555677764
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.029 Score=50.81 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=40.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC---CCceeeeC-----CceeEEeecCccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSFQ-----DKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s---~G~~~~~~-----~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
|||+|+|| |.+|..+...|...++ ..+++++. ++. .|...... .....+...+.+++.++|+||.|++.
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~-~~eV~L~D-~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~ 77 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGS-CSELVLVD-RDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGA 77 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEEC-SSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEe-CCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCC
Confidence 58999997 9999999999988753 22555553 221 11100000 01223332234567899999999965
Q ss_pred c
Q 023678 112 S 112 (279)
Q Consensus 112 ~ 112 (279)
.
T Consensus 78 ~ 78 (304)
T 2v6b_A 78 N 78 (304)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.013 Score=52.70 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=53.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeec-C-ccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEEL-T-EDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~-d-~~~~~~~DvVf~a~g~~~s~ 115 (279)
..+|+|+| .|.+|+.+.+.|...++ ++.++ +++... ......+ ....+. + .+.+.++|+|+.|+|...-.
T Consensus 155 g~~v~IiG-~G~iG~~~a~~l~~~G~---~V~~~-dr~~~~~~~~~~~g--~~~~~~~~l~~~l~~aDvVi~~~p~~~i~ 227 (293)
T 3d4o_A 155 GANVAVLG-LGRVGMSVARKFAALGA---KVKVG-ARESDLLARIAEMG--MEPFHISKAAQELRDVDVCINTIPALVVT 227 (293)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-ESSHHHHHHHHHTT--SEEEEGGGHHHHTTTCSEEEECCSSCCBC
T ss_pred CCEEEEEe-eCHHHHHHHHHHHhCCC---EEEEE-ECCHHHHHHHHHCC--CeecChhhHHHHhcCCCEEEECCChHHhC
Confidence 57999999 69999999999987643 55444 332210 0011011 112111 1 12357899999999875432
Q ss_pred hhHHHHHhCCCEEEEcCC
Q 023678 116 KFGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~ 133 (279)
+-.-...+.|..+||.+.
T Consensus 228 ~~~l~~mk~~~~lin~ar 245 (293)
T 3d4o_A 228 ANVLAEMPSHTFVIDLAS 245 (293)
T ss_dssp HHHHHHSCTTCEEEECSS
T ss_pred HHHHHhcCCCCEEEEecC
Confidence 222234568999999875
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0068 Score=55.60 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=61.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC-----CceeEEeecCc-cCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-----DKAYTVEELTE-DSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~-----~~~~~v~~~d~-~~~~~~DvVf~a~g~ 111 (279)
+..+++||| +|..|+..++.|.+. +|..++. +.+|+ ....+... +...... +. +...++|+||+|++.
T Consensus 120 ~~~~v~iIG-aG~~a~~~~~al~~~-~~~~~V~-v~~r~-~a~~la~~l~~~~g~~~~~~--~~~eav~~aDIVi~aT~s 193 (313)
T 3hdj_A 120 RSSVLGLFG-AGTQGAEHAAQLSAR-FALEAIL-VHDPY-ASPEILERIGRRCGVPARMA--APADIAAQADIVVTATRS 193 (313)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHH-SCCCEEE-EECTT-CCHHHHHHHHHHHTSCEEEC--CHHHHHHHCSEEEECCCC
T ss_pred CCcEEEEEC-ccHHHHHHHHHHHHh-CCCcEEE-EECCc-HHHHHHHHHHHhcCCeEEEe--CHHHHHhhCCEEEEccCC
Confidence 357899999 799999999988652 1544444 44555 22222110 2122222 32 234679999999997
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
... -+-...++.|..|+|.++.-. + .-|+.++.+.
T Consensus 194 ~~p-vl~~~~l~~G~~V~~vGs~~p---~----~~El~~~~~~ 228 (313)
T 3hdj_A 194 TTP-LFAGQALRAGAFVGAIGSSLP---H----TRELDDEALR 228 (313)
T ss_dssp SSC-SSCGGGCCTTCEEEECCCSST---T----CCCCCHHHHH
T ss_pred CCc-ccCHHHcCCCcEEEECCCCCC---c----hhhcCHHHHh
Confidence 632 111234678999999987531 1 2466666665
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.01 Score=56.01 Aligned_cols=87 Identities=11% Similarity=0.139 Sum_probs=50.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--------CCceeeeCC---------ceeEEeecCc-cCCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--------AGKQLSFQD---------KAYTVEELTE-DSFDG 101 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--------~G~~~~~~~---------~~~~v~~~d~-~~~~~ 101 (279)
|||+||| .|++|..+...|.+ +| ++..+ .++. .+..+...+ ..+.+.. +. +.+.+
T Consensus 1 MkI~VIG-~G~vG~~~A~~La~-G~---~V~~~-d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~-~~~~~~~~ 73 (402)
T 1dlj_A 1 MKIAVAG-SGYVGLSLGVLLSL-QN---EVTIV-DILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATL-DSKAAYKE 73 (402)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTT-TS---EEEEE-CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEES-CHHHHHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHhC-CC---EEEEE-ECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeC-CHHHHhcC
Confidence 5899999 59999999999987 64 44444 2221 111110000 0112211 21 23457
Q ss_pred CcEEEecCCCch-----------hhhhHHHH--HhCCCEEEEcCC
Q 023678 102 VDIALFSAGGSI-----------SKKFGPIA--VEKGSIVVDNSS 133 (279)
Q Consensus 102 ~DvVf~a~g~~~-----------s~~~~~~~--~~aG~~VIDlS~ 133 (279)
+|+||.|+++.. ..+.+..+ +..|..||+.|.
T Consensus 74 aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST 118 (402)
T 1dlj_A 74 AELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKST 118 (402)
T ss_dssp CSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSC
T ss_pred CCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 899999999872 33333322 457888998554
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.019 Score=52.20 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=61.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCc--hhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~--~s~ 115 (279)
+..+|.|+|+++.||+-+.++|.+.+ ..+..+.++ . + ++ .+....+|+||.|+|.. +..
T Consensus 158 ~gk~vvVIG~s~iVG~p~A~lL~~~g---AtVtv~hs~-t--~------------~L-~~~~~~ADIVI~Avg~p~lI~~ 218 (288)
T 1b0a_A 158 FGLNAVVIGASNIVGRPMSMELLLAG---CTTTVTHRF-T--K------------NL-RHHVENADLLIVAVGKPGFIPG 218 (288)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTT---CEEEEECSS-C--S------------CH-HHHHHHCSEEEECSCCTTCBCT
T ss_pred CCCEEEEECCChHHHHHHHHHHHHCC---CeEEEEeCC-c--h------------hH-HHHhccCCEEEECCCCcCcCCH
Confidence 35799999998899999999998863 444444321 1 0 10 12235789999999854 334
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
++ .+.|+.|||.+.+ |.+++ -.+-.|+-+..+.
T Consensus 219 ~~----vk~GavVIDVgi~-r~~~g--~l~GDVdf~~v~~ 251 (288)
T 1b0a_A 219 DW----IKEGAIVIDVGIN-RLENG--KVVGDVVFEDAAK 251 (288)
T ss_dssp TT----SCTTCEEEECCCE-ECTTS--CEECSBCHHHHHH
T ss_pred HH----cCCCcEEEEccCC-ccCCC--CccCCcCHHHHhh
Confidence 44 3789999999876 44432 2466777666553
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.03 Score=51.25 Aligned_cols=96 Identities=17% Similarity=0.323 Sum_probs=62.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCc--hhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~--~s~ 115 (279)
+..++.|+|++|.+|+-+..+|.+.+ .++..+.+ +.. ++. + .+....+|+||.|+|.. +..
T Consensus 164 ~Gk~vvVIG~s~iVG~p~A~lL~~~g---AtVtv~~~-~T~---------~l~---l-~~~~~~ADIVI~Avg~p~~I~~ 226 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGAPVAALLMKEN---ATVTIVHS-GTS---------TED---M-IDYLRTADIVIAAMGQPGYVKG 226 (300)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTT---CEEEEECT-TSC---------HHH---H-HHHHHTCSEEEECSCCTTCBCG
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeC-CCC---------Cch---h-hhhhccCCEEEECCCCCCCCcH
Confidence 35799999999999999999998863 34444432 211 000 0 02346789999999853 334
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCC-Cc---eeeccCCHHhhhc
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVEN-VP---LVIPEVNPEAMSG 155 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~-vp---lvvPevN~~~i~~ 155 (279)
++ .+.|+.|||.+.. |.++. -+ -.+-.|+-+..+.
T Consensus 227 ~~----vk~GavVIDvgi~-~~~~~~~~~g~kl~GDVdf~~v~~ 265 (300)
T 4a26_A 227 EW----IKEGAAVVDVGTT-PVPDPSRKDGYRLVGDVCFEEAAA 265 (300)
T ss_dssp GG----SCTTCEEEECCCE-EESCSCSTTSCEEECSBCHHHHTT
T ss_pred Hh----cCCCcEEEEEecc-CCcCCcccCCceeecCccHHHHHh
Confidence 44 4789999999876 43331 11 3566777776664
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.024 Score=51.24 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=43.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceee--e------CCceeEEeecCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS--F------QDKAYTVEELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~--~------~~~~~~v~~~d~~~~~~~DvVf~a~g 110 (279)
+||+|+| .|.+|..+...|..+++ ..++.++ .++.. -+.+. . ......+...+.+.+.++|+||.|++
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~-~~~V~l~-d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~aDvViiav~ 78 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGV-ADDYVFI-DANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLG 78 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTC-CSEEEEE-CSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCS
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-CCEEEEE-cCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHHHhCCCCEEEEecC
Confidence 6999999 79999999999988753 2355555 33210 00010 0 01123332223456789999999998
Q ss_pred Cch
Q 023678 111 GSI 113 (279)
Q Consensus 111 ~~~ 113 (279)
...
T Consensus 79 ~~~ 81 (309)
T 1hyh_A 79 NIK 81 (309)
T ss_dssp CGG
T ss_pred Ccc
Confidence 754
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.032 Score=53.63 Aligned_cols=92 Identities=17% Similarity=0.266 Sum_probs=56.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC----Cce-ee--------eC--------CceeEEeecCcc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA----GKQ-LS--------FQ--------DKAYTVEELTED 97 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~----G~~-~~--------~~--------~~~~~v~~~d~~ 97 (279)
.+||+||| .|.+|..+...|..++| ++.++ .++.. +.. +. .+ .....+ ..+.+
T Consensus 37 ~~kV~VIG-aG~MG~~iA~~la~~G~---~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~ 110 (463)
T 1zcj_A 37 VSSVGVLG-LGTMGRGIAISFARVGI---SVVAV-ESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTK 110 (463)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTC---EEEEE-CSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGG
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCC---eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHH
Confidence 46899999 59999999999998865 44444 32211 000 00 00 000122 22334
Q ss_pred CCCCCcEEEecCCCchh--hhhHHH---HHhCCCEEEEcCCCCC
Q 023678 98 SFDGVDIALFSAGGSIS--KKFGPI---AVEKGSIVVDNSSAFR 136 (279)
Q Consensus 98 ~~~~~DvVf~a~g~~~s--~~~~~~---~~~aG~~VIDlS~~~R 136 (279)
.+.++|+||.|++.... +++..+ ++..|+.|+++++...
T Consensus 111 ~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~ 154 (463)
T 1zcj_A 111 ELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALN 154 (463)
T ss_dssp GGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSC
T ss_pred HHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcC
Confidence 56789999999997643 333333 3457889999888753
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.036 Score=49.86 Aligned_cols=71 Identities=20% Similarity=0.323 Sum_probs=42.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC---CCceee--eCC---ceeEEee-cCccCCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLS--FQD---KAYTVEE-LTEDSFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s---~G~~~~--~~~---~~~~v~~-~d~~~~~~~DvVf~a~ 109 (279)
+|||+|+|| |.+|..+...|...++ ..++.++ .++. .+..+. ... ....+.. .+.+.+.++|+||.|+
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g~-~~~V~l~-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v 83 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRGI-AREIVLE-DIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITA 83 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEE-CSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEE-eCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECC
Confidence 479999997 9999999999988753 1255555 3321 011111 000 0223322 1345567899999999
Q ss_pred CCc
Q 023678 110 GGS 112 (279)
Q Consensus 110 g~~ 112 (279)
+..
T Consensus 84 ~~~ 86 (319)
T 1lld_A 84 GPR 86 (319)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.035 Score=47.76 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=40.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-----ccCC-CCCcEEEecCCCch
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-----EDSF-DGVDIALFSAGGSI 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-----~~~~-~~~DvVf~a~g~~~ 113 (279)
++|.|.||+|.+|+++.+.|.++++ +++.+ +|+.... ... ...++.+.+ .+.+ ..+|++|.+.+...
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~-~r~~~~~--~~~-~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~ 74 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGH---QIVGI-DIRDAEV--IAD-LSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGP 74 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEE-ESSSSSE--ECC-TTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEE-eCCchhh--ccc-cccCCCCHHHHHHHHHHhCCCCCEEEECCCCCC
Confidence 4799999999999999999998754 44444 4433211 100 111111111 1123 57899999987644
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.013 Score=50.19 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=28.1
Q ss_pred ccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 34 SYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 34 ~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+..++.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 2 ~~~~~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~ 37 (248)
T 2pnf_A 2 EIKLQGKVSLVTGSTRGIGRAIAEKLASAGS---TVIIT 37 (248)
T ss_dssp CCCCTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEE
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 3334457899999999999999999998754 45444
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.022 Score=48.85 Aligned_cols=36 Identities=8% Similarity=0.224 Sum_probs=27.9
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR 76 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~ 76 (279)
++.++|.|.||+|.+|+.+++.|.++++ +++++ +|+
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~---~V~~~-~r~ 40 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGA---KVGLH-GRK 40 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEE-ESS
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEE-CCC
Confidence 3456899999999999999999998754 45444 443
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.027 Score=47.85 Aligned_cols=30 Identities=13% Similarity=0.455 Sum_probs=25.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~---~V~~~ 35 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGY---RVGLM 35 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 5799999999999999999998854 44444
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.03 Score=44.90 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=44.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC--ceee---eCCceeEEeecC-c-----cCCCCCcEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG--KQLS---FQDKAYTVEELT-E-----DSFDGVDIAL 106 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G--~~~~---~~~~~~~v~~~d-~-----~~~~~~DvVf 106 (279)
...+|.|+|+ |.+|+.+.+.|.+.+++ ++++. ++... +.+. ..+......+.. + ..+.++|+|+
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~---V~vid-~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQN---VTVIS-NLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCC---EEEEE-CCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCC---EEEEE-CCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence 4568999995 99999999999887653 44453 22110 0111 011122222322 1 1357899999
Q ss_pred ecCCCchhhhhH
Q 023678 107 FSAGGSISKKFG 118 (279)
Q Consensus 107 ~a~g~~~s~~~~ 118 (279)
.|++.+.....+
T Consensus 77 ~~~~~d~~n~~~ 88 (153)
T 1id1_A 77 ALSDNDADNAFV 88 (153)
T ss_dssp ECSSCHHHHHHH
T ss_pred EecCChHHHHHH
Confidence 999877544333
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.022 Score=51.87 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=42.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---Ccee--ee----CCceeEEee-cCccCCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GKQL--SF----QDKAYTVEE-LTEDSFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---G~~~--~~----~~~~~~v~~-~d~~~~~~~DvVf~a~ 109 (279)
+||+|+|| |++|..+...|...++ ++++++ +.... |... .. ......+.. .+.+++.++|+||.+.
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~--~~v~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aD~Vi~a~ 78 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKEL--GDIVLL-DIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTS 78 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC--SEEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC--CeEEEE-eCCccHHHHHHHhHHHhHhhcCCCeEEEECCCHHHHCCCCEEEEcC
Confidence 69999998 9999999999988743 354444 33211 1100 00 011222322 2345688999999998
Q ss_pred CCc
Q 023678 110 GGS 112 (279)
Q Consensus 110 g~~ 112 (279)
|..
T Consensus 79 g~p 81 (309)
T 1ur5_A 79 GAP 81 (309)
T ss_dssp CC-
T ss_pred CCC
Confidence 653
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.025 Score=48.27 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=26.7
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+..+|.|.||+|.+|+++++.|.++++ +++++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~ 37 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATGA---RVVAV 37 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 3457899999999999999999998754 45444
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.073 Score=51.16 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=60.4
Q ss_pred CCEEEEECcCc---HHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC-CCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTG---AVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG---~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s 114 (279)
..+|+|+|||+ ..|..+++.|.+++ ...+..+. .+ +..+ .+ +.+.. +..++ ..+|+++.++|....
T Consensus 8 p~siAVvGas~~~~~~g~~v~~~l~~~g--~~~v~pVn-P~--~~~i--~G--~~~y~-sl~~lp~~~Dlavi~vp~~~~ 77 (457)
T 2csu_A 8 PKGIAVIGASNDPKKLGYEVFKNLKEYK--KGKVYPVN-IK--EEEV--QG--VKAYK-SVKDIPDEIDLAIIVVPKRFV 77 (457)
T ss_dssp CSEEEEETCCSCTTSHHHHHHHHHTTCC--SSEEEEEC-SS--CSEE--TT--EECBS-STTSCSSCCSEEEECSCHHHH
T ss_pred CCeEEEECcCCCCCchHHHHHHHHHHcC--CCEEEEEC-CC--CCeE--CC--EeccC-CHHHcCCCCCEEEEecCHHHH
Confidence 46899999994 67999999998774 44555553 22 2222 11 22221 11222 368999999999999
Q ss_pred hhhHHHHHhCCCE-EEEcCCCC
Q 023678 115 KKFGPIAVEKGSI-VVDNSSAF 135 (279)
Q Consensus 115 ~~~~~~~~~aG~~-VIDlS~~~ 135 (279)
.+.+.++.++|++ +|=+++.|
T Consensus 78 ~~~v~e~~~~Gi~~vv~~s~G~ 99 (457)
T 2csu_A 78 KDTLIQCGEKGVKGVVIITAGF 99 (457)
T ss_dssp HHHHHHHHHHTCCEEEECCCSS
T ss_pred HHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999996 45577766
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.021 Score=52.39 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=43.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCce--eeeC---CceeEEeecCccCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQ--LSFQ---DKAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~--~~~~---~~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
+||+|+|| |.||..++-.|...++ ..+++++.... ..|.. +... ..+..+..-+.+++.++|+|+.+.+..
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~-~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~ 83 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGI-AEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAP 83 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC-
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCC-CCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence 89999998 9999999998877632 34666663211 11110 0000 123344432345688999999998753
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.025 Score=51.83 Aligned_cols=68 Identities=21% Similarity=0.409 Sum_probs=41.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---Cce--eee----CCceeEEee-cCccCCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GKQ--LSF----QDKAYTVEE-LTEDSFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---G~~--~~~----~~~~~~v~~-~d~~~~~~~DvVf~a 108 (279)
++||+|+|| |++|..+...|...++ ++++++ ..... |.. +.. ......+.. .+.+++.++|+||.+
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~--~~v~L~-Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~Vi~a 79 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNL--GDVVLF-DIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVT 79 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEE-CSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEE-eCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhCCCCEEEEe
Confidence 479999997 9999999999998854 354444 33221 100 000 011222322 234567899999999
Q ss_pred CC
Q 023678 109 AG 110 (279)
Q Consensus 109 ~g 110 (279)
.+
T Consensus 80 ~g 81 (322)
T 1t2d_A 80 AG 81 (322)
T ss_dssp CS
T ss_pred CC
Confidence 85
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.021 Score=52.36 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=44.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-----CCceeeeC------CceeEEe-ecCccCCCCCcE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-----AGKQLSFQ------DKAYTVE-ELTEDSFDGVDI 104 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-----~G~~~~~~------~~~~~v~-~~d~~~~~~~Dv 104 (279)
|+.+||+|+|| |.+|..+...|..+++ .+++++. ... .|...... .....+. ..+.+++.++|+
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~--~~v~l~D-~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDv 81 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKEL--ADVVLVD-IPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDV 81 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEEC-CGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSE
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEe-ccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCE
Confidence 34679999996 9999999999988755 3665553 221 11111100 1112233 223457889999
Q ss_pred EEecCCC
Q 023678 105 ALFSAGG 111 (279)
Q Consensus 105 Vf~a~g~ 111 (279)
||.|.|.
T Consensus 82 VIiaag~ 88 (315)
T 3tl2_A 82 VVITAGI 88 (315)
T ss_dssp EEECCSC
T ss_pred EEEeCCC
Confidence 9999864
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0084 Score=53.49 Aligned_cols=88 Identities=16% Similarity=0.231 Sum_probs=52.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecC-ccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~ 116 (279)
.++|+|+| .|.+|+.+++.|.+.++ ++..+ +|+.. .+.+... ....+.+ + .+.+.++|+|+.|++.+...+
T Consensus 129 ~~~v~iiG-aG~~g~aia~~L~~~g~---~V~v~-~r~~~~~~~l~~~-~g~~~~~-~~~~~~~~aDiVi~atp~~~~~~ 201 (275)
T 2hk9_A 129 EKSILVLG-AGGASRAVIYALVKEGA---KVFLW-NRTKEKAIKLAQK-FPLEVVN-SPEEVIDKVQVIVNTTSVGLKDE 201 (275)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHHTC---EEEEE-CSSHHHHHHHTTT-SCEEECS-CGGGTGGGCSEEEECSSTTSSTT
T ss_pred CCEEEEEC-chHHHHHHHHHHHHcCC---EEEEE-ECCHHHHHHHHHH-cCCeeeh-hHHhhhcCCCEEEEeCCCCCCCC
Confidence 46999999 59999999999988743 54444 33211 0111100 0122221 2 233568999999999875321
Q ss_pred ---hH-HHHHhCCCEEEEcCC
Q 023678 117 ---FG-PIAVEKGSIVVDNSS 133 (279)
Q Consensus 117 ---~~-~~~~~aG~~VIDlS~ 133 (279)
.. ...++.|..|+|.+.
T Consensus 202 ~~~~i~~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 202 DPEIFNYDLIKKDHVVVDIIY 222 (275)
T ss_dssp CCCSSCGGGCCTTSEEEESSS
T ss_pred CCCCCCHHHcCCCCEEEEcCC
Confidence 12 233467888888876
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.15 Score=44.63 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=26.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 38 (264)
T 2dtx_A 7 RDKVVIVTGASMGIGRAIAERFVDEGS---KVIDL 38 (264)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 346899999999999999999998754 45544
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.053 Score=47.85 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++++.|.++++ +++++
T Consensus 44 ~k~vlITGasggIG~~la~~L~~~G~---~V~~~ 74 (285)
T 2c07_A 44 NKVALVTGAGRGIGREIAKMLAKSVS---HVICI 74 (285)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSS---EEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCC---EEEEE
Confidence 46899999999999999999998743 55553
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.019 Score=52.96 Aligned_cols=90 Identities=10% Similarity=0.232 Sum_probs=54.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-----CCceeeeCCcee-EEeec---C-ccCCCCCcEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-----AGKQLSFQDKAY-TVEEL---T-EDSFDGVDIALF 107 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-----~G~~~~~~~~~~-~v~~~---d-~~~~~~~DvVf~ 107 (279)
...+|.|+|++..||+-+.++|.+.+ ..+..+ .++. .+..+....... .+... + .+.+..+|+||.
T Consensus 176 ~gk~vvVIG~G~iVG~~~A~~L~~~g---AtVtv~-nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs 251 (320)
T 1edz_A 176 YGKKCIVINRSEIVGRPLAALLANDG---ATVYSV-DVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT 251 (320)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTS---CEEEEE-CSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCcchHHHHHHHHHHCC---CEEEEE-eCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence 35799999987789999999998863 343333 2210 011111000111 11101 1 123467999999
Q ss_pred cCCCc---hhhhhHHHHHhCCCEEEEcCCCC
Q 023678 108 SAGGS---ISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 108 a~g~~---~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
|++.. +..+++ +.|+.|||.+.+-
T Consensus 252 Atg~p~~vI~~e~v----k~GavVIDVgi~r 278 (320)
T 1edz_A 252 GVPSENYKFPTEYI----KEGAVCINFACTK 278 (320)
T ss_dssp CCCCTTCCBCTTTS----CTTEEEEECSSSC
T ss_pred CCCCCcceeCHHHc----CCCeEEEEcCCCc
Confidence 99875 555554 6799999998763
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.026 Score=51.47 Aligned_cols=72 Identities=19% Similarity=0.356 Sum_probs=43.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC---CCce--eee----CCceeEEeecCccCCCCCcEEEec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQ--LSF----QDKAYTVEELTEDSFDGVDIALFS 108 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s---~G~~--~~~----~~~~~~v~~~d~~~~~~~DvVf~a 108 (279)
+++||+|+|| |.+|..+...|...+. ..+++++. .+. .|.. +.. ...+..+..-+.+++.++|+||.|
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~-~~ev~l~D-i~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia 81 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGI-ADEIVLID-ANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVIC 81 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEEC-SSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEEC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCC-CCEEEEEe-CCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEc
Confidence 3579999998 9999999988876632 33666653 221 1110 000 111334443234568899999999
Q ss_pred CCCc
Q 023678 109 AGGS 112 (279)
Q Consensus 109 ~g~~ 112 (279)
+|..
T Consensus 82 ~~~~ 85 (316)
T 1ldn_A 82 AGAN 85 (316)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8754
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0066 Score=55.30 Aligned_cols=91 Identities=10% Similarity=0.252 Sum_probs=52.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC-CceeEEeecCc-cCCCCCcEEEecCCCchh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-DKAYTVEELTE-DSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~-~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s 114 (279)
+.++|+||| +|..|+.+++.|.+. ++..++. +.+++.. .+.+... +..+.+.+ +. +.+.++|+||.|++..
T Consensus 134 ~~~~igiIG-~G~~g~~~a~~l~~~-~g~~~V~-v~dr~~~~~~~l~~~~~~~~~~~~-~~~e~v~~aDiVi~atp~~-- 207 (312)
T 2i99_A 134 SSEVLCILG-AGVQAYSHYEIFTEQ-FSFKEVR-IWNRTKENAEKFADTVQGEVRVCS-SVQEAVAGADVIITVTLAT-- 207 (312)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHH-CCCSEEE-EECSSHHHHHHHHHHSSSCCEECS-SHHHHHTTCSEEEECCCCS--
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHHh-CCCcEEE-EEcCCHHHHHHHHHHhhCCeEEeC-CHHHHHhcCCEEEEEeCCC--
Confidence 457999999 699999999988654 1222433 4343311 0111100 10122211 22 2346799999999964
Q ss_pred hhhHH-HHHhCCCEEEEcCCC
Q 023678 115 KKFGP-IAVEKGSIVVDNSSA 134 (279)
Q Consensus 115 ~~~~~-~~~~aG~~VIDlS~~ 134 (279)
..+.. ..++.|..|+|.++.
T Consensus 208 ~~v~~~~~l~~g~~vi~~g~~ 228 (312)
T 2i99_A 208 EPILFGEWVKPGAHINAVGAS 228 (312)
T ss_dssp SCCBCGGGSCTTCEEEECCCC
T ss_pred CcccCHHHcCCCcEEEeCCCC
Confidence 23332 456789999998654
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.018 Score=51.36 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=26.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+.++|.|.||||++|+.|++.|.++++ +++.+.
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~ 34 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGY---EVYGAD 34 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEE
Confidence 357899999999999999999998754 555553
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.0071 Score=53.40 Aligned_cols=85 Identities=11% Similarity=0.127 Sum_probs=51.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee-CCceeEEeecCccCCCCCcEEEecCCCchhh-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-QDKAYTVEELTEDSFDGVDIALFSAGGSISK- 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~-~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~- 115 (279)
. +|+|+|+ |.+|+.+++.|.+.++ ++... +|+.. .+.+.. .+. .+.+++ +. .++|+|+.|++.....
T Consensus 117 ~-~v~iiG~-G~~g~~~a~~l~~~g~---~v~v~-~r~~~~~~~l~~~~~~--~~~~~~-~~-~~~Divi~~tp~~~~~~ 186 (263)
T 2d5c_A 117 G-PALVLGA-GGAGRAVAFALREAGL---EVWVW-NRTPQRALALAEEFGL--RAVPLE-KA-REARLLVNATRVGLEDP 186 (263)
T ss_dssp S-CEEEECC-SHHHHHHHHHHHHTTC---CEEEE-CSSHHHHHHHHHHHTC--EECCGG-GG-GGCSEEEECSSTTTTCT
T ss_pred C-eEEEECC-cHHHHHHHHHHHHCCC---EEEEE-ECCHHHHHHHHHHhcc--chhhHh-hc-cCCCEEEEccCCCCCCC
Confidence 5 8999994 8899999999988753 44333 43321 011110 011 122222 23 6799999999987532
Q ss_pred ---hhHHHHHhCCCEEEEcCC
Q 023678 116 ---KFGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 116 ---~~~~~~~~aG~~VIDlS~ 133 (279)
.+....++.|..|||++.
T Consensus 187 ~~~~l~~~~l~~g~~viD~~~ 207 (263)
T 2d5c_A 187 SASPLPAELFPEEGAAVDLVY 207 (263)
T ss_dssp TCCSSCGGGSCSSSEEEESCC
T ss_pred CCCCCCHHHcCCCCEEEEeec
Confidence 121234567889999874
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.027 Score=54.45 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=57.9
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cce-----ee---eCC-----------ceeEEeecCc
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQ-----LS---FQD-----------KAYTVEELTE 96 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~-----~~---~~~-----------~~~~v~~~d~ 96 (279)
++.+||+||| .|..|..+...|.+.+| ++.++ .++.. +.. +. ..+ ..+.+. .+.
T Consensus 52 ~~i~kVaVIG-aG~MG~~IA~~la~aG~---~V~l~-D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl 125 (460)
T 3k6j_A 52 YDVNSVAIIG-GGTMGKAMAICFGLAGI---ETFLV-VRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDF 125 (460)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCG
T ss_pred ccCCEEEEEC-CCHHHHHHHHHHHHCCC---eEEEE-ECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCH
Confidence 3457999999 59999999999998765 44444 32211 100 00 011 012222 223
Q ss_pred cCCCCCcEEEecCCCchh--hhhHHHH---HhCCCEEEEcCCCCC
Q 023678 97 DSFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFR 136 (279)
Q Consensus 97 ~~~~~~DvVf~a~g~~~s--~~~~~~~---~~aG~~VIDlS~~~R 136 (279)
+.+.++|+||.|++.... +++..++ +..|+.++|++|..-
T Consensus 126 ~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~ 170 (460)
T 3k6j_A 126 HKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLD 170 (460)
T ss_dssp GGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC
T ss_pred HHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChh
Confidence 457899999999997532 3344443 356888989988754
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.014 Score=56.81 Aligned_cols=89 Identities=15% Similarity=0.262 Sum_probs=54.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeee-C--CceeEEeecCcc----CCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSF-Q--DKAYTVEELTED----SFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~-~--~~~~~v~~~d~~----~~~~~DvVf~a~g 110 (279)
.+|+||| .|..|..|.+.|.+++|+ +.+. .++. .+ .+.. . +..+... .+.+ .+..+|+||+|++
T Consensus 11 ~~IgvIG-lG~MG~~lA~~La~~G~~---V~v~-dr~~-~~~~~l~~~~~~~~gi~~~-~s~~e~v~~l~~aDvVil~Vp 83 (497)
T 2p4q_A 11 ADFGLIG-LAVMGQNLILNAADHGFT---VCAY-NRTQ-SKVDHFLANEAKGKSIIGA-TSIEDFISKLKRPRKVMLLVK 83 (497)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTCC---EEEE-CSSS-HHHHHHHHTTTTTSSEECC-SSHHHHHHTSCSSCEEEECCC
T ss_pred CCEEEEe-eHHHHHHHHHHHHHCCCE---EEEE-eCCH-HHHHHHHcccccCCCeEEe-CCHHHHHhcCCCCCEEEEEcC
Confidence 5799999 799999999999998763 3333 3321 11 1111 0 0112211 1221 2234899999999
Q ss_pred Cc-hhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 111 GS-ISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 111 ~~-~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
.. ...+.+..+. +.|..|||.|...
T Consensus 84 ~~~~v~~vl~~l~~~l~~g~iIId~s~~~ 112 (497)
T 2p4q_A 84 AGAPVDALINQIVPLLEKGDIIIDGGNSH 112 (497)
T ss_dssp SSHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 96 5555555443 4688999998765
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.06 Score=46.56 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=27.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+++|.|.||+|.+|+++.+.|.+++....+++++.
T Consensus 21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~ 55 (267)
T 1sny_A 21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTC 55 (267)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEE
T ss_pred CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEe
Confidence 46899999999999999999998741114665553
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.03 Score=51.02 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=42.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceee--eC-----CceeEEeecCccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS--FQ-----DKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~--~~-----~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
|||+|+|| |.+|..+...|...++ ..++.++ ++... -+.+. .. .....+...+.+.+.++|+||.|++.
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~-~~~V~l~-D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~aDvViiav~~ 77 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLI-DVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV 77 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEE-CSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEE-eCChHHHHHHHHHHHhhhhhcCCcEEEeCCHHHhCCCCEEEEccCC
Confidence 58999997 9999999999987754 2255555 33210 00000 00 00122322244557899999999986
Q ss_pred ch
Q 023678 112 SI 113 (279)
Q Consensus 112 ~~ 113 (279)
..
T Consensus 78 ~~ 79 (319)
T 1a5z_A 78 PQ 79 (319)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.064 Score=49.47 Aligned_cols=85 Identities=12% Similarity=0.143 Sum_probs=52.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
.++|+||| .|.+|+.+.+.|...++ ++.+. +++.... . +.. ...++ .+.+.++|+|++|+|... .+..
T Consensus 164 g~~vgIIG-~G~iG~~vA~~l~~~G~---~V~~~-dr~~~~~-~---g~~-~~~~l-~ell~~aDvVil~vP~~~~t~~l 232 (333)
T 3ba1_A 164 GKRVGIIG-LGRIGLAVAERAEAFDC---PISYF-SRSKKPN-T---NYT-YYGSV-VELASNSDILVVACPLTPETTHI 232 (333)
T ss_dssp TCCEEEEC-CSHHHHHHHHHHHTTTC---CEEEE-CSSCCTT-C---CSE-EESCH-HHHHHTCSEEEECSCCCGGGTTC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC---EEEEE-CCCchhc-c---Cce-ecCCH-HHHHhcCCEEEEecCCChHHHHH
Confidence 46899999 69999999999987654 44443 3322111 0 111 11121 123468999999999753 3333
Q ss_pred H----HHHHhCCCEEEEcCCC
Q 023678 118 G----PIAVEKGSIVVDNSSA 134 (279)
Q Consensus 118 ~----~~~~~aG~~VIDlS~~ 134 (279)
. -...+.|+.+||.|..
T Consensus 233 i~~~~l~~mk~gailIn~srG 253 (333)
T 3ba1_A 233 INREVIDALGPKGVLINIGRG 253 (333)
T ss_dssp BCHHHHHHHCTTCEEEECSCG
T ss_pred hhHHHHhcCCCCCEEEECCCC
Confidence 2 1245689999988754
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.05 Score=50.48 Aligned_cols=84 Identities=15% Similarity=0.254 Sum_probs=48.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCc-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGS-ISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~-~s~~ 116 (279)
.++|+||| .|.+|+.+.+.|...++ ++.+. +++.. +.. ..... .+. +.+..+|+|++++|.+ .++.
T Consensus 171 gktiGIIG-lG~IG~~vA~~l~~~G~---~V~~~-dr~~~-~~~-----~~~~~-~sl~ell~~aDvVil~vP~t~~t~~ 238 (340)
T 4dgs_A 171 GKRIGVLG-LGQIGRALASRAEAFGM---SVRYW-NRSTL-SGV-----DWIAH-QSPVDLARDSDVLAVCVAASAATQN 238 (340)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC---EEEEE-CSSCC-TTS-----CCEEC-SSHHHHHHTCSEEEECC--------
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC---EEEEE-cCCcc-ccc-----Cceec-CCHHHHHhcCCEEEEeCCCCHHHHH
Confidence 57999999 79999999999987643 55444 33221 110 11111 121 2356899999999843 2222
Q ss_pred hH----HHHHhCCCEEEEcCCC
Q 023678 117 FG----PIAVEKGSIVVDNSSA 134 (279)
Q Consensus 117 ~~----~~~~~aG~~VIDlS~~ 134 (279)
.. -...+.|+.+||.+..
T Consensus 239 li~~~~l~~mk~gailIN~aRG 260 (340)
T 4dgs_A 239 IVDASLLQALGPEGIVVNVARG 260 (340)
T ss_dssp --CHHHHHHTTTTCEEEECSCC
T ss_pred HhhHHHHhcCCCCCEEEECCCC
Confidence 22 1234689999988754
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.08 Score=47.55 Aligned_cols=84 Identities=10% Similarity=0.135 Sum_probs=52.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecCccCCCCCcEEEecCCCchhh--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK-- 115 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~-- 115 (279)
.+|.|+|| |-+|+.++..|.+.+ .++..+ +|. ..+ .+... ......+ +++.++|+||.|+|.+...
T Consensus 119 k~vlvlGa-GGaaraia~~L~~~G---~~v~V~-nRt-~~ka~~la~~--~~~~~~~--~~l~~~DiVInaTp~Gm~~~~ 188 (269)
T 3phh_A 119 QNALILGA-GGSAKALACELKKQG---LQVSVL-NRS-SRGLDFFQRL--GCDCFME--PPKSAFDLIINATSASLHNEL 188 (269)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT---CEEEEE-CSS-CTTHHHHHHH--TCEEESS--CCSSCCSEEEECCTTCCCCSC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CEEEEE-eCC-HHHHHHHHHC--CCeEecH--HHhccCCEEEEcccCCCCCCC
Confidence 68999995 999999999998874 454444 443 222 22100 1222222 2344799999999876432
Q ss_pred ----hhHHHHHhCCCEEEEcCC
Q 023678 116 ----KFGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 116 ----~~~~~~~~aG~~VIDlS~ 133 (279)
+.+...+..+..|+|+..
T Consensus 189 ~l~~~~l~~~l~~~~~v~D~vY 210 (269)
T 3phh_A 189 PLNKEVLKGYFKEGKLAYDLAY 210 (269)
T ss_dssp SSCHHHHHHHHHHCSEEEESCC
T ss_pred CCChHHHHhhCCCCCEEEEeCC
Confidence 222224567889999864
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.016 Score=53.27 Aligned_cols=89 Identities=10% Similarity=0.119 Sum_probs=52.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchh-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS-KKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s-~~~ 117 (279)
.++|+||| .|.+|+.+.+.|...++ ++..+ +++...... .........++ .+.+.++|+|+.|++.... +..
T Consensus 155 g~~vgIIG-~G~iG~~iA~~l~~~G~---~V~~~-d~~~~~~~~-~~~~g~~~~~l-~e~l~~aDvVi~~vp~~~~t~~~ 227 (330)
T 2gcg_A 155 QSTVGIIG-LGRIGQAIARRLKPFGV---QRFLY-TGRQPRPEE-AAEFQAEFVST-PELAAQSDFIVVACSLTPATEGL 227 (330)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGTC---CEEEE-ESSSCCHHH-HHTTTCEECCH-HHHHHHCSEEEECCCCCTTTTTC
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC---EEEEE-CCCCcchhH-HHhcCceeCCH-HHHHhhCCEEEEeCCCChHHHHh
Confidence 57999999 59999999999987754 44444 333221100 00001122221 1234678999999987532 222
Q ss_pred H----HHHHhCCCEEEEcCCC
Q 023678 118 G----PIAVEKGSIVVDNSSA 134 (279)
Q Consensus 118 ~----~~~~~aG~~VIDlS~~ 134 (279)
. -...+.|+.+||.|..
T Consensus 228 i~~~~~~~mk~gailIn~srg 248 (330)
T 2gcg_A 228 CNKDFFQKMKETAVFINISRG 248 (330)
T ss_dssp BSHHHHHHSCTTCEEEECSCG
T ss_pred hCHHHHhcCCCCcEEEECCCC
Confidence 2 1334678899987653
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.0079 Score=55.68 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=42.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC----CceEEEEEeecCC----CCceeee-----CC-ceeEEeecCccCCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQLSF-----QD-KAYTVEELTEDSFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~----p~~~l~~l~s~~s----~G~~~~~-----~~-~~~~v~~~d~~~~~~~Dv 104 (279)
.+||+|+||+|.||..++..|...+. ..++++++..... .|..... .. ..+.+..-+.+++.++|+
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDv 82 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCE
Confidence 57999999999999999999876532 1123666632211 1221111 10 122222212346789999
Q ss_pred EEecCCC
Q 023678 105 ALFSAGG 111 (279)
Q Consensus 105 Vf~a~g~ 111 (279)
||.+.|.
T Consensus 83 VvitAg~ 89 (333)
T 5mdh_A 83 AILVGSM 89 (333)
T ss_dssp EEECCSC
T ss_pred EEEeCCC
Confidence 9998763
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.028 Score=48.93 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=27.2
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 37 (263)
T 3ai3_A 4 GISGKVAVITGSSSGIGLAIAEGFAKEGA---HIVLV 37 (263)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 34457899999999999999999998854 45444
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.021 Score=51.07 Aligned_cols=32 Identities=13% Similarity=0.287 Sum_probs=25.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
|++|.|.||||++|+.|++.|.++++ +++.+.
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~ 32 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGI---DLIVFD 32 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCC---EEEEEe
Confidence 36899999999999999999998754 555553
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.025 Score=52.20 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=43.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCce-EEEEEeecCC--CCceeeeC-----CceeEEeecCccCCCCCcEEEecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRS--AGKQLSFQ-----DKAYTVEELTEDSFDGVDIALFSA 109 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~-~l~~l~s~~s--~G~~~~~~-----~~~~~v~~~d~~~~~~~DvVf~a~ 109 (279)
+.+||+|+|| |.+|..+...|... +.+ +++++..... .|...... .....+..-+.+++.++|+||.+.
T Consensus 8 ~~~kV~ViGa-G~vG~~~a~~l~~~--~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~a 84 (326)
T 3vku_A 8 DHQKVILVGD-GAVGSSYAYAMVLQ--GIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITA 84 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC--CCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECC
Confidence 4579999996 99999999998877 333 6666532110 11110000 012334333346688999999998
Q ss_pred CC
Q 023678 110 GG 111 (279)
Q Consensus 110 g~ 111 (279)
|.
T Consensus 85 g~ 86 (326)
T 3vku_A 85 GA 86 (326)
T ss_dssp CC
T ss_pred CC
Confidence 75
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.022 Score=51.91 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=42.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceeee------CCceeEEe-ecCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSF------QDKAYTVE-ELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~~------~~~~~~v~-~~d~~~~~~~DvVf~a~g 110 (279)
|||+|+|| |.||+.+.-+|..++ -.-+++++--.+ ..|..... ......+. .-|.+++.++|+|+.+.|
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~-~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG 78 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAG 78 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecC
Confidence 79999996 999999998877662 224676663221 12221111 11122232 234567889999999987
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.051 Score=52.14 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=59.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-e-CCceeEE--eecCccCCCCCcEEEecCCCc-h
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-F-QDKAYTV--EELTEDSFDGVDIALFSAGGS-I 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~-~~~~~~v--~~~d~~~~~~~DvVf~a~g~~-~ 113 (279)
.++|.|+| .|-+|...++.|.+.+ .++.+++ .+.. ..+. . ....+.+ .+++..++.++|+||.|++.. .
T Consensus 12 ~~~vlVvG-gG~va~~k~~~L~~~g---a~V~vi~-~~~~-~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~~~ 85 (457)
T 1pjq_A 12 DRDCLIVG-GGDVAERKARLLLEAG---ARLTVNA-LTFI-PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTV 85 (457)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT---BEEEEEE-SSCC-HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHHH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCc---CEEEEEc-CCCC-HHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCHHH
Confidence 47999999 6999999999999864 3555554 3211 1111 0 1112333 234456678899999999987 5
Q ss_pred hhhhHHHHHhCCCEE--EEc
Q 023678 114 SKKFGPIAVEKGSIV--VDN 131 (279)
Q Consensus 114 s~~~~~~~~~aG~~V--IDl 131 (279)
.......+.+.|+.| +|.
T Consensus 86 n~~i~~~a~~~~i~vn~~d~ 105 (457)
T 1pjq_A 86 NQRVSDAAESRRIFCNVVDA 105 (457)
T ss_dssp HHHHHHHHHHTTCEEEETTC
T ss_pred HHHHHHHHHHcCCEEEECCC
Confidence 778888888999987 553
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.077 Score=45.83 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=27.2
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 37 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGA---DIAIA 37 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 34456899999999999999999998754 44444
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.094 Score=48.09 Aligned_cols=69 Identities=17% Similarity=0.374 Sum_probs=41.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---Cc--eeee----CCceeEEee-cCccCCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GK--QLSF----QDKAYTVEE-LTEDSFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---G~--~~~~----~~~~~~v~~-~d~~~~~~~DvVf~a 108 (279)
++||+|+|| |.+|..+...|...++ ++++++ +.+.. +. .+.. ......+.. .|.+++.++|+||.|
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~--~~V~L~-Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~VI~a 89 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDL--GDVYMF-DIIEGVPQGKALDLNHCMALIGSPAKIFGENNYEYLQNSDVVIIT 89 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEE-CSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEE-ECCHHHHHHHHHHHHhHhhccCCCCEEEECCCHHHHCCCCEEEEc
Confidence 369999997 9999999999998854 344444 33221 10 0000 001112322 234567899999999
Q ss_pred CCC
Q 023678 109 AGG 111 (279)
Q Consensus 109 ~g~ 111 (279)
.|.
T Consensus 90 vg~ 92 (328)
T 2hjr_A 90 AGV 92 (328)
T ss_dssp CSC
T ss_pred CCC
Confidence 853
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.077 Score=48.13 Aligned_cols=90 Identities=11% Similarity=0.132 Sum_probs=54.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cceeee-CC---ceeEEeecCccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSF-QD---KAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~~~~~-~~---~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
.+||+||| .|..|..+.+.|. .+| ++.++ .++.. .+.... .. ..+.+.. +.+++.++|+||.|++..
T Consensus 12 ~~~V~vIG-~G~MG~~iA~~la-aG~---~V~v~-d~~~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~~aDlVieavpe~ 84 (293)
T 1zej_A 12 HMKVFVIG-AGLMGRGIAIAIA-SKH---EVVLQ-DVSEKALEAAREQIPEELLSKIEFTT-TLEKVKDCDIVMEAVFED 84 (293)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHH-TTS---EEEEE-CSCHHHHHHHHHHSCGGGGGGEEEES-SCTTGGGCSEEEECCCSC
T ss_pred CCeEEEEe-eCHHHHHHHHHHH-cCC---EEEEE-ECCHHHHHHHHHHHHHHHhCCeEEeC-CHHHHcCCCEEEEcCcCC
Confidence 47999999 6999999999999 876 34444 22210 000000 00 0123221 233477899999999988
Q ss_pred hh--hhhHHHHHh-CCCEEEEcCCCC
Q 023678 113 IS--KKFGPIAVE-KGSIVVDNSSAF 135 (279)
Q Consensus 113 ~s--~~~~~~~~~-aG~~VIDlS~~~ 135 (279)
.. +.+..++.. .|+.+++++|..
T Consensus 85 ~~vk~~l~~~l~~~~~~IlasntSti 110 (293)
T 1zej_A 85 LNTKVEVLREVERLTNAPLCSNTSVI 110 (293)
T ss_dssp HHHHHHHHHHHHTTCCSCEEECCSSS
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCc
Confidence 64 333222222 788887777665
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.032 Score=51.22 Aligned_cols=71 Identities=23% Similarity=0.356 Sum_probs=43.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeee------CCceeEEe-ecCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF------QDKAYTVE-ELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~------~~~~~~v~-~~d~~~~~~~DvVf~a~g 110 (279)
|||+|+|| |.+|..+...|..+++ .-+++++..... .|..... ...+..+. .-+.+++.++|+||.+.|
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~-~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag 78 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDV-AKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAG 78 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-SSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCC
Confidence 68999996 9999999999887743 226655532211 1111111 11123343 223567889999999987
Q ss_pred Cc
Q 023678 111 GS 112 (279)
Q Consensus 111 ~~ 112 (279)
..
T Consensus 79 ~~ 80 (314)
T 3nep_X 79 LP 80 (314)
T ss_dssp C-
T ss_pred CC
Confidence 54
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.0071 Score=56.33 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=53.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHc-CCCCceEEEEEeecCCC-Cceee--eCC-ceeEEeec-Cc-cCCCCCcEEEecCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSA-GKQLS--FQD-KAYTVEEL-TE-DSFDGVDIALFSAG 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~-~~~p~~~l~~l~s~~s~-G~~~~--~~~-~~~~v~~~-d~-~~~~~~DvVf~a~g 110 (279)
+..+|+||| +|..|+..++.|.. + +..++ .+.+++.. .+.+. +.. ..+.+... +. +.+.++|+|+.|++
T Consensus 128 ~~~~v~iIG-aG~~a~~~a~al~~~~--~~~~V-~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTp 203 (350)
T 1x7d_A 128 NARKMALIG-NGAQSEFQALAFHKHL--GIEEI-VAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA 203 (350)
T ss_dssp TCCEEEEEC-CSTTHHHHHHHHHHHS--CCCEE-EEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC
T ss_pred cCCeEEEEC-CcHHHHHHHHHHHHhC--CCcEE-EEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEecc
Confidence 357899999 69999998887643 3 43344 44444321 11111 010 01222222 22 23468999999999
Q ss_pred CchhhhhH-HHHHhCCCEEEEcCCC
Q 023678 111 GSISKKFG-PIAVEKGSIVVDNSSA 134 (279)
Q Consensus 111 ~~~s~~~~-~~~~~aG~~VIDlS~~ 134 (279)
........ ...++.|..|++.++.
T Consensus 204 s~~~~pvl~~~~l~~G~~V~~vgs~ 228 (350)
T 1x7d_A 204 DKAYATIITPDMLEPGMHLNAVGGD 228 (350)
T ss_dssp CSSEEEEECGGGCCTTCEEEECSCC
T ss_pred CCCCCceecHHHcCCCCEEEECCCC
Confidence 86322222 2456789999998775
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.031 Score=50.78 Aligned_cols=91 Identities=19% Similarity=0.345 Sum_probs=60.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCc--hhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~--~s~ 115 (279)
+..++.|+|++|.+|+-+..+|.+.+ ..+....+ +. + ++ .+....+|+||.|+|.. +..
T Consensus 160 ~Gk~vvVIG~s~iVG~p~A~lL~~~g---AtVtv~hs-~t--~------------~L-~~~~~~ADIVI~Avg~p~~I~~ 220 (285)
T 3l07_A 160 EGAYAVVVGASNVVGKPVSQLLLNAK---ATVTTCHR-FT--T------------DL-KSHTTKADILIVAVGKPNFITA 220 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTT---CEEEEECT-TC--S------------SH-HHHHTTCSEEEECCCCTTCBCG
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCC---CeEEEEeC-Cc--h------------hH-HHhcccCCEEEECCCCCCCCCH
Confidence 35799999999999999999998863 34444432 11 0 11 12346789999999853 334
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
++ .+.|+.|||.+.. |.+ + -.+-.|+-+..+.
T Consensus 221 ~~----vk~GavVIDvgi~-~~~-g--~l~GDVdf~~v~~ 252 (285)
T 3l07_A 221 DM----VKEGAVVIDVGIN-HVD-G--KIVGDVDFAAVKD 252 (285)
T ss_dssp GG----SCTTCEEEECCCE-EET-T--EEECSBCHHHHTT
T ss_pred HH----cCCCcEEEEeccc-CcC-C--ceecCccHHHHHh
Confidence 44 3789999999865 433 2 3566677666653
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.048 Score=48.78 Aligned_cols=92 Identities=13% Similarity=0.179 Sum_probs=55.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CC-ceeEEeecCccCC-CCCcEEEecCCCchhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QD-KAYTVEELTEDSF-DGVDIALFSAGGSISKK 116 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~-~~~~v~~~d~~~~-~~~DvVf~a~g~~~s~~ 116 (279)
|||+|+| .|.+|..+...|.+.+++ +.++ .|+..+..... .+ ....+.....+.. .++|+||+|++.....+
T Consensus 3 mkI~iiG-aGa~G~~~a~~L~~~g~~---V~~~-~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~~~~ 77 (294)
T 3g17_A 3 LSVAIIG-PGAVGTTIAYELQQSLPH---TTLI-GRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQLDA 77 (294)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHHCTT---CEEE-ESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGGHHH
T ss_pred cEEEEEC-CCHHHHHHHHHHHHCCCe---EEEE-EeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccCHHH
Confidence 6899999 599999999999877653 3333 33322211111 11 1112221112233 67899999999987766
Q ss_pred hHHHHH---hCCCEEEEcCCCCC
Q 023678 117 FGPIAV---EKGSIVVDNSSAFR 136 (279)
Q Consensus 117 ~~~~~~---~aG~~VIDlS~~~R 136 (279)
.++.+. ..+..||.+..-+.
T Consensus 78 ~l~~l~~~l~~~~~iv~~~nGi~ 100 (294)
T 3g17_A 78 VIPHLTYLAHEDTLIILAQNGYG 100 (294)
T ss_dssp HGGGHHHHEEEEEEEEECCSSCC
T ss_pred HHHHHHHhhCCCCEEEEeccCcc
Confidence 665553 34567777776653
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.1 Score=45.71 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=25.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+++++.|.++++ +++++
T Consensus 32 ~k~vlVTGasggIG~~la~~l~~~G~---~V~~~ 62 (279)
T 1xg5_A 32 DRLALVTGASGGIGAAVARALVQQGL---KVVGC 62 (279)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45544
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.028 Score=51.50 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=25.9
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++++|.|.||||++|+.|++.|.++++ +++.+
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~---~V~~~ 41 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKNY---EVCIV 41 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCCC---eEEEE
Confidence 3478999999999999999999998754 55555
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.012 Score=53.83 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=53.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee--C--CceeEEeecCccCCCCCcEEEecCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--Q--DKAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~--~--~~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
+..+++||| +|..|+..++.|.+.. +..+ +.+.+|+... +.+.. . +....+.++ .+.+ ++|+|+.|+++.
T Consensus 124 ~~~~v~iIG-aG~~a~~~~~al~~~~-~~~~-V~v~~r~~~~a~~la~~~~~~~~~~~~~~~-~e~v-~aDvVi~aTp~~ 198 (322)
T 1omo_A 124 NSSVFGFIG-CGTQAYFQLEALRRVF-DIGE-VKAYDVREKAAKKFVSYCEDRGISASVQPA-EEAS-RCDVLVTTTPSR 198 (322)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHS-CCCE-EEEECSSHHHHHHHHHHHHHTTCCEEECCH-HHHT-SSSEEEECCCCS
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHHhC-CccE-EEEECCCHHHHHHHHHHHHhcCceEEECCH-HHHh-CCCEEEEeeCCC
Confidence 357999999 6999999999887631 3334 4454543211 11110 0 011222121 2345 799999999975
Q ss_pred hhhhhH-HHHHhCCCEEEEcCCC
Q 023678 113 ISKKFG-PIAVEKGSIVVDNSSA 134 (279)
Q Consensus 113 ~s~~~~-~~~~~aG~~VIDlS~~ 134 (279)
. ... ...++.|..|+|.++.
T Consensus 199 ~--pv~~~~~l~~G~~V~~ig~~ 219 (322)
T 1omo_A 199 K--PVVKAEWVEEGTHINAIGAD 219 (322)
T ss_dssp S--CCBCGGGCCTTCEEEECSCC
T ss_pred C--ceecHHHcCCCeEEEECCCC
Confidence 3 222 2456789999998654
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.059 Score=49.00 Aligned_cols=92 Identities=20% Similarity=0.318 Sum_probs=60.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCc--hhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~--~s~ 115 (279)
+..++.|+|++|.+|+-+..+|.+. ...+....++ .. ++ .+....+|+||.|+|.. +..
T Consensus 160 ~Gk~vvVvGrs~iVG~plA~lL~~~---gAtVtv~hs~-T~--------------~L-~~~~~~ADIVI~Avg~p~~I~~ 220 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGRPMALELLLG---GCTVTVTHRF-TR--------------DL-ADHVSRADLVVVAAGKPGLVKG 220 (286)
T ss_dssp TTCEEEEECTTSTTHHHHHHHHHHT---TCEEEEECTT-CS--------------CH-HHHHHTCSEEEECCCCTTCBCG
T ss_pred CCCEEEEECCCchhHHHHHHHHHHC---CCeEEEEeCC-Cc--------------CH-HHHhccCCEEEECCCCCCCCCH
Confidence 3579999999999999999999886 3344444321 10 11 12245789999999753 344
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
++ .+.|+.|||.+.. |.+++ -.+-.|+-+..+.
T Consensus 221 ~~----vk~GavVIDvgi~-~~~~g--kl~GDVdf~~v~~ 253 (286)
T 4a5o_A 221 EW----IKEGAIVIDVGIN-RQADG--RLVGDVEYEVAAQ 253 (286)
T ss_dssp GG----SCTTCEEEECCSC-SSCCC--CSSCSBCHHHHHH
T ss_pred HH----cCCCeEEEEeccc-ccccC--CcccCccHHHHHh
Confidence 44 3789999999865 44432 2455666555553
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.031 Score=51.42 Aligned_cols=87 Identities=14% Similarity=0.245 Sum_probs=52.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
.++|+||| .|.+|+.+.+.|...++ ++... +++. .+... ........++ .+.+.++|+|++|+|... .+..
T Consensus 150 g~~vgIIG-~G~iG~~iA~~l~~~G~---~V~~~-d~~~-~~~~~-~~~g~~~~~l-~~~l~~aDvVil~vp~~~~t~~~ 221 (334)
T 2dbq_A 150 GKTIGIIG-LGRIGQAIAKRAKGFNM---RILYY-SRTR-KEEVE-RELNAEFKPL-EDLLRESDFVVLAVPLTRETYHL 221 (334)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSSC-CHHHH-HHHCCEECCH-HHHHHHCSEEEECCCCCTTTTTC
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhCCC---EEEEE-CCCc-chhhH-hhcCcccCCH-HHHHhhCCEEEECCCCChHHHHh
Confidence 47899999 69999999999987653 54444 3322 21110 0001122221 123467899999998765 3332
Q ss_pred H----HHHHhCCCEEEEcCC
Q 023678 118 G----PIAVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~----~~~~~aG~~VIDlS~ 133 (279)
. -...+.|+.+||.|.
T Consensus 222 i~~~~~~~mk~~ailIn~sr 241 (334)
T 2dbq_A 222 INEERLKLMKKTAILINIAR 241 (334)
T ss_dssp BCHHHHHHSCTTCEEEECSC
T ss_pred hCHHHHhcCCCCcEEEECCC
Confidence 2 123467999998773
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.038 Score=49.96 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=51.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCccCCCCCcEEEecCCCchhh--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK-- 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~-- 115 (279)
..++.|+|| |-+|+.++..|.+.+ .-++..+ +|... .+.+........+.+++. + ++|+|+.|+|.+...
T Consensus 122 ~k~vlvlGa-GGaaraia~~L~~~G--~~~v~v~-nRt~~ka~~La~~~~~~~~~~l~~--l-~~DivInaTp~Gm~~~~ 194 (282)
T 3fbt_A 122 NNICVVLGS-GGAARAVLQYLKDNF--AKDIYVV-TRNPEKTSEIYGEFKVISYDELSN--L-KGDVIINCTPKGMYPKE 194 (282)
T ss_dssp TSEEEEECS-STTHHHHHHHHHHTT--CSEEEEE-ESCHHHHHHHCTTSEEEEHHHHTT--C-CCSEEEECSSTTSTTST
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcC--CCEEEEE-eCCHHHHHHHHHhcCcccHHHHHh--c-cCCEEEECCccCccCCC
Confidence 468999996 777999999998873 2244444 44311 111111111112222322 4 799999999876432
Q ss_pred ---hhHHHHHhCCCEEEEcC
Q 023678 116 ---KFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 116 ---~~~~~~~~aG~~VIDlS 132 (279)
.+....+..+..|+|+-
T Consensus 195 ~~~pi~~~~l~~~~~v~Dlv 214 (282)
T 3fbt_A 195 GESPVDKEVVAKFSSAVDLI 214 (282)
T ss_dssp TCCSSCHHHHTTCSEEEESC
T ss_pred ccCCCCHHHcCCCCEEEEEe
Confidence 23445667888899974
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.035 Score=49.10 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=25.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 26 ~k~vlITGasggiG~~la~~L~~~G~---~V~~~ 56 (302)
T 1w6u_A 26 GKVAFITGGGTGLGKGMTTLLSSLGA---QCVIA 56 (302)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998854 45444
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.052 Score=52.60 Aligned_cols=94 Identities=14% Similarity=0.262 Sum_probs=56.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC--ceee----------eCCc-----------eeEEeec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG--KQLS----------FQDK-----------AYTVEEL 94 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G--~~~~----------~~~~-----------~~~v~~~ 94 (279)
+.+||+||| .|..|..+...|.+.+|+ +.+. .++... +... ..+. .+... .
T Consensus 4 ~~~kVgVIG-aG~MG~~IA~~la~aG~~---V~l~-D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~ 77 (483)
T 3mog_A 4 NVQTVAVIG-SGTMGAGIAEVAASHGHQ---VLLY-DISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-T 77 (483)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCC---EEEE-CSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-C
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCCe---EEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-C
Confidence 356899999 599999999999988764 3333 322110 0000 0010 12222 1
Q ss_pred CccCCCCCcEEEecCCCchh--hhhHHHH---HhCCCEEEEcCCCCCC
Q 023678 95 TEDSFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFRM 137 (279)
Q Consensus 95 d~~~~~~~DvVf~a~g~~~s--~~~~~~~---~~aG~~VIDlS~~~R~ 137 (279)
+.+.+.++|+||.|++.... +++..++ +..|+.+++++|..-.
T Consensus 78 ~~~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i 125 (483)
T 3mog_A 78 DIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI 125 (483)
T ss_dssp CGGGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH
T ss_pred CHHHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH
Confidence 23457789999999998743 3444333 4578888888776543
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.036 Score=49.43 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=26.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+++|.|.||||++|+.|++.|.++++ +++.+.
T Consensus 14 ~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~ 45 (335)
T 1rpn_A 14 TRSALVTGITGQDGAYLAKLLLEKGY---RVHGLV 45 (335)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCC---eEEEEe
Confidence 57999999999999999999998754 555554
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.12 Score=45.24 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=25.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 31 ~k~vlITGasggIG~~la~~L~~~G~---~V~~~ 61 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFAKLKS---KLVLW 61 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998854 45444
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.051 Score=49.08 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=51.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--------CCceeeeCCceeEEeec--CccCCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--------AGKQLSFQDKAYTVEEL--TEDSFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--------~G~~~~~~~~~~~v~~~--d~~~~~~~DvVf~a 108 (279)
+|||+|+| .|.+|..+...|. .++ ++.++ .|+. .|..+...+.. ..... +.+....+|+||+|
T Consensus 2 ~mkI~IiG-aGa~G~~~a~~L~-~g~---~V~~~-~r~~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~~~~~D~vila 74 (307)
T 3ego_A 2 SLKIGIIG-GGSVGLLCAYYLS-LYH---DVTVV-TRRQEQAAAIQSEGIRLYKGGEE-FRADCSADTSINSDFDLLVVT 74 (307)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHH-TTS---EEEEE-CSCHHHHHHHHHHCEEEEETTEE-EEECCEEESSCCSCCSEEEEC
T ss_pred CCEEEEEC-CCHHHHHHHHHHh-cCC---ceEEE-ECCHHHHHHHHhCCceEecCCCe-ecccccccccccCCCCEEEEE
Confidence 37999999 5999999999998 653 44444 3321 12111111111 11111 12234678999999
Q ss_pred CCCchhhhhHHHHHh--CCCEEEEcCCCC
Q 023678 109 AGGSISKKFGPIAVE--KGSIVVDNSSAF 135 (279)
Q Consensus 109 ~g~~~s~~~~~~~~~--aG~~VIDlS~~~ 135 (279)
+.+....+.++.+.. .+. ||.+..-+
T Consensus 75 vK~~~~~~~l~~l~~~~~~~-ivs~~nGi 102 (307)
T 3ego_A 75 VKQHQLQSVFSSLERIGKTN-ILFLQNGM 102 (307)
T ss_dssp CCGGGHHHHHHHTTSSCCCE-EEECCSSS
T ss_pred eCHHHHHHHHHHhhcCCCCe-EEEecCCc
Confidence 999877777665532 233 56554433
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.084 Score=44.97 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=27.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s 74 (279)
+.++|.|.||+|.+|+++.+.|.++++ +++.+..
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G~---~V~~~~~ 37 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMGA---NIVLNGS 37 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEEC
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEcC
Confidence 356899999999999999999998753 5555533
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.068 Score=43.91 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=47.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcC-CCCceEEEEEeecCCC-CceeeeCCceeEEeecC-c----c--CCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT-E----D--SFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~-~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d-~----~--~~~~~DvVf~a~ 109 (279)
..+|+|+| .|.+|+.+.+.|.+. +++ ++++. ++.. -..+...+......+.. . + .+.++|+||.|+
T Consensus 39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~~---V~vid-~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~ 113 (183)
T 3c85_A 39 HAQVLILG-MGRIGTGAYDELRARYGKI---SLGIE-IREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM 113 (183)
T ss_dssp TCSEEEEC-CSHHHHHHHHHHHHHHCSC---EEEEE-SCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhccCCe---EEEEE-CCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence 46899999 599999999999876 654 44442 2210 00111112222222221 1 1 256799999999
Q ss_pred CCchhhhh-HHHHHhCC--CEEEE
Q 023678 110 GGSISKKF-GPIAVEKG--SIVVD 130 (279)
Q Consensus 110 g~~~s~~~-~~~~~~aG--~~VID 130 (279)
+....... ...+...| ..||.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~ii~ 137 (183)
T 3c85_A 114 PHHQGNQTALEQLQRRNYKGQIAA 137 (183)
T ss_dssp SSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CChHHHHHHHHHHHHHCCCCEEEE
Confidence 97644333 33334433 34553
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.011 Score=53.66 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=50.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC-Ccee-EEeecC--ccCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-DKAY-TVEELT--EDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~-~~~~-~v~~~d--~~~~~~~DvVf~a~g~~~ 113 (279)
..+|.|+|+ |-+|+.++..|.+.++ .++..+ +|+.. .+.+... +... .+.+++ .+.+.++|+||.|+|.+.
T Consensus 141 ~~~vlVlGa-Gg~g~aia~~L~~~G~--~~V~v~-nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 141 GKRILVIGA-GGGARGIYFSLLSTAA--ERIDMA-NRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM 216 (297)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTC--SEEEEE-CSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred CCEEEEECc-HHHHHHHHHHHHHCCC--CEEEEE-eCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence 468999996 8899999999988743 244444 43311 0111100 0000 122111 123567999999999775
Q ss_pred hhh-----hHHHHHhCCCEEEEcCC
Q 023678 114 SKK-----FGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 114 s~~-----~~~~~~~aG~~VIDlS~ 133 (279)
... +....++.|..|+|++-
T Consensus 217 ~~~~~~~~i~~~~l~~~~~v~D~~y 241 (297)
T 2egg_A 217 HPRVEVQPLSLERLRPGVIVSDIIY 241 (297)
T ss_dssp SSCCSCCSSCCTTCCTTCEEEECCC
T ss_pred CCCCCCCCCCHHHcCCCCEEEEcCC
Confidence 321 11122445667777653
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.049 Score=49.12 Aligned_cols=86 Identities=14% Similarity=0.224 Sum_probs=55.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-----eee--------------e-------CCcee-EE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-----QLS--------------F-------QDKAY-TV 91 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-----~~~--------------~-------~~~~~-~v 91 (279)
.++|.|+| .|-+|...++.|.+.|+ ++.+++.....+. .+. + ....+ .+
T Consensus 13 ~k~VLVVG-gG~va~rka~~Ll~~Ga---~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 88 (274)
T 1kyq_A 13 DKRILLIG-GGEVGLTRLYKLMPTGC---KLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIYEY 88 (274)
T ss_dssp TCEEEEEE-ESHHHHHHHHHHGGGTC---EEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSCCCSEE
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhCCC---EEEEEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccCCeeEE
Confidence 57999999 69999999999998753 4555543221110 000 0 00122 33
Q ss_pred e--ecCccCCC------CCcEEEecCCCc-hhhhhHHHHHhC---CCEE
Q 023678 92 E--ELTEDSFD------GVDIALFSAGGS-ISKKFGPIAVEK---GSIV 128 (279)
Q Consensus 92 ~--~~d~~~~~------~~DvVf~a~g~~-~s~~~~~~~~~a---G~~V 128 (279)
. +++..++. ++|+||.|++.. ....++..+.+. |..|
T Consensus 89 i~~~~~~~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~~f~~~i~V 137 (274)
T 1kyq_A 89 IRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLV 137 (274)
T ss_dssp ECSSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEE
T ss_pred EcCCCCHHHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHHhcCCCcEE
Confidence 2 33445566 899999999986 677777777777 8776
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.015 Score=53.53 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=44.9
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCce--eeeC---CceeEEeecCccCCCCCcEEEecC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQ--LSFQ---DKAYTVEELTEDSFDGVDIALFSA 109 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~--~~~~---~~~~~v~~~d~~~~~~~DvVf~a~ 109 (279)
++.+||+|+|| |.||..++-.|...++ ..+++++.-.. ..|.. +... ..+..+..-+.+++.++|+|+.+.
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~-~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~a 84 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGI-AQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITA 84 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCC-CCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcC
Confidence 34589999998 9999999998877632 23566653211 11110 1000 123344432345688999999998
Q ss_pred CCc
Q 023678 110 GGS 112 (279)
Q Consensus 110 g~~ 112 (279)
+..
T Consensus 85 g~~ 87 (326)
T 2zqz_A 85 GAP 87 (326)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.052 Score=46.10 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=49.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecC-c-----cCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELT-E-----DSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d-~-----~~~~~~DvVf~a~g~~ 112 (279)
|||.|+|+ |.+|+.+.+.|.+++++ ++.+......-..+. ..+......+.. . ..+.++|+|+.|++.+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~---v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 76 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYG---VVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRD 76 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCC---EEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCe---EEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCc
Confidence 58999996 99999999999987653 444532111001111 011122222221 1 1356899999999988
Q ss_pred hhhhhHHHHH-h-CCC-EEE
Q 023678 113 ISKKFGPIAV-E-KGS-IVV 129 (279)
Q Consensus 113 ~s~~~~~~~~-~-aG~-~VI 129 (279)
.....+...+ + .|. ++|
T Consensus 77 ~~n~~~~~~a~~~~~~~~ii 96 (218)
T 3l4b_C 77 EVNLFIAQLVMKDFGVKRVV 96 (218)
T ss_dssp HHHHHHHHHHHHTSCCCEEE
T ss_pred HHHHHHHHHHHHHcCCCeEE
Confidence 6655554443 3 344 455
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=94.06 E-value=0.053 Score=50.18 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=42.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCcee------eeCCceeEEe-ecCccCCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQL------SFQDKAYTVE-ELTEDSFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~------~~~~~~~~v~-~~d~~~~~~~DvVf~a~ 109 (279)
.+||+|+|| |.+|..+...|..+++ .-+++++..... .|... .+.. ...+. ..|.+++.++|+||.+.
T Consensus 21 ~~kV~ViGa-G~vG~~~a~~la~~g~-~~ev~L~Di~~~~~~g~a~DL~~~~~~~~-~~~i~~t~d~~~~~daDiVIita 97 (330)
T 3ldh_A 21 YNKITVVGC-DAVGMADAISVLMKDL-ADEVALVDVMEDKLKGEMMDLEHGSLFLH-TAKIVSGKDYSVSAGSKLVVITA 97 (330)
T ss_dssp CCEEEEEST-THHHHHHHHHHHHHCC-CSEEEEECSCHHHHHHHHHHHHHHGGGSC-CSEEEEESSSCSCSSCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHHhhhhhhccc-CCeEEEcCCHHHhCCCCEEEEeC
Confidence 479999998 9999999999887742 125555532111 11110 0111 11222 22445689999999997
Q ss_pred CC
Q 023678 110 GG 111 (279)
Q Consensus 110 g~ 111 (279)
|.
T Consensus 98 G~ 99 (330)
T 3ldh_A 98 GA 99 (330)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.054 Score=48.51 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++|.|.||||++|+.|++.|.++++ +++.+
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~ 32 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAGY---LPVVI 32 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC---CEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 6899999999999999999998764 45555
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.032 Score=52.55 Aligned_cols=73 Identities=25% Similarity=0.403 Sum_probs=42.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC-Cc---eEEEEEeecCC----CCceeeeCC------ceeEEeecCccCCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF-PY---RSIKMLASKRS----AGKQLSFQD------KAYTVEELTEDSFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~-p~---~~l~~l~s~~s----~G~~~~~~~------~~~~v~~~d~~~~~~~Dv 104 (279)
.+||+|+||+|.||..++-.|...+. .. +.|..+..... .|......+ ..+.+..-+.+++.++|+
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDv 111 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 111 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCE
Confidence 47999999999999999988877632 11 33333322111 121111111 123333222456889999
Q ss_pred EEecCCC
Q 023678 105 ALFSAGG 111 (279)
Q Consensus 105 Vf~a~g~ 111 (279)
|+.+.|.
T Consensus 112 VVitag~ 118 (375)
T 7mdh_A 112 ALLIGAK 118 (375)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998763
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.056 Score=49.31 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=51.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
.++|+||| .|.+|+.+.+.|...+ .++... +++..... ....++ .+.+..+|+|++|+|... .+.+
T Consensus 144 g~~vgIIG-~G~IG~~~A~~l~~~G---~~V~~~-d~~~~~~~-------~~~~~l-~ell~~aDvV~l~~p~~~~t~~l 210 (311)
T 2cuk_A 144 GLTLGLVG-MGRIGQAVAKRALAFG---MRVVYH-ARTPKPLP-------YPFLSL-EELLKEADVVSLHTPLTPETHRL 210 (311)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEE-CSSCCSSS-------SCBCCH-HHHHHHCSEEEECCCCCTTTTTC
T ss_pred CCEEEEEE-ECHHHHHHHHHHHHCC---CEEEEE-CCCCcccc-------cccCCH-HHHHhhCCEEEEeCCCChHHHhh
Confidence 47899999 7999999999998764 354444 33221110 111111 123457899999998763 3332
Q ss_pred HH----HHHhCCCEEEEcCC
Q 023678 118 GP----IAVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~~----~~~~aG~~VIDlS~ 133 (279)
.. ...+.|+.+||.+.
T Consensus 211 i~~~~l~~mk~ga~lin~sr 230 (311)
T 2cuk_A 211 LNRERLFAMKRGAILLNTAR 230 (311)
T ss_dssp BCHHHHTTSCTTCEEEECSC
T ss_pred cCHHHHhhCCCCcEEEECCC
Confidence 21 12467899998875
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.035 Score=51.71 Aligned_cols=89 Identities=15% Similarity=0.253 Sum_probs=51.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCCCCCcEEEecCCCc-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGS-ISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~-~s~~ 116 (279)
.++|+||| .|.+|+.+.+.|..-+ .++... +++........ ....... ++ .+.+..+|+|+.++|.+ .++.
T Consensus 164 gktvGIIG-~G~IG~~vA~~l~~~G---~~V~~~-dr~~~~~~~~~-~~g~~~~~~l-~ell~~aDvV~l~~Plt~~t~~ 236 (351)
T 3jtm_A 164 GKTIGTVG-AGRIGKLLLQRLKPFG---CNLLYH-DRLQMAPELEK-ETGAKFVEDL-NEMLPKCDVIVINMPLTEKTRG 236 (351)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGC---CEEEEE-CSSCCCHHHHH-HHCCEECSCH-HHHGGGCSEEEECSCCCTTTTT
T ss_pred CCEEeEEE-eCHHHHHHHHHHHHCC---CEEEEe-CCCccCHHHHH-hCCCeEcCCH-HHHHhcCCEEEECCCCCHHHHH
Confidence 47999999 7999999999998654 344444 33321111000 0011111 11 23356899999999954 2222
Q ss_pred hH----HHHHhCCCEEEEcCCC
Q 023678 117 FG----PIAVEKGSIVVDNSSA 134 (279)
Q Consensus 117 ~~----~~~~~aG~~VIDlS~~ 134 (279)
.. -...+.|+.+||.+..
T Consensus 237 li~~~~l~~mk~gailIN~aRG 258 (351)
T 3jtm_A 237 MFNKELIGKLKKGVLIVNNARG 258 (351)
T ss_dssp CBSHHHHHHSCTTEEEEECSCG
T ss_pred hhcHHHHhcCCCCCEEEECcCc
Confidence 21 1234679999987743
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.052 Score=49.68 Aligned_cols=94 Identities=19% Similarity=0.348 Sum_probs=59.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCc--hhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~--~s~ 115 (279)
+..+|.|+|+++.||+-+.++|.+.+ ..+..+.++ . .++ .+....+|+||.|++.. +..
T Consensus 164 ~gk~vvVIG~s~iVG~p~A~lL~~~g---AtVtv~hs~-t--------------~~L-~~~~~~ADIVI~Avg~p~~I~~ 224 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVGAPMHDLLLWNN---ATVTTCHSK-T--------------AHL-DEEVNKGDILVVATGQPEMVKG 224 (301)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTT---CEEEEECTT-C--------------SSH-HHHHTTCSEEEECCCCTTCBCG
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCC---CeEEEEECC-c--------------ccH-HHHhccCCEEEECCCCcccCCH
Confidence 35799999998899999999998863 344444221 1 011 12346899999999764 444
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCC----CceeeccCCHHhhhc
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMSG 155 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~----vplvvPevN~~~i~~ 155 (279)
++ ++.|+.|||.+.+. .++. ..-.+-.|+-+..+.
T Consensus 225 ~~----vk~GavVIDVgi~~-~~d~~~~~g~klvGDVdf~~v~~ 263 (301)
T 1a4i_A 225 EW----IKPGAIVIDCGINY-VPDDKKPNGRKVVGDVAYDEAKE 263 (301)
T ss_dssp GG----SCTTCEEEECCCBC-----------CCBCSBCHHHHTT
T ss_pred HH----cCCCcEEEEccCCC-cccccccCCCeeeccccHHHhhh
Confidence 44 36899999998863 3321 112456777666654
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.02 Score=56.13 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=53.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccCCCCCcEEEecCCCc-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGS-ISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~-~s~~ 116 (279)
.++|+||| .|.+|+.+.+.|...++ ++... ++.. ..... ..+ ....++ .+.+..+|+|+.|+|.. ..+.
T Consensus 142 g~~vgIIG-~G~IG~~vA~~l~~~G~---~V~~~-d~~~-~~~~a~~~g--~~~~~l-~e~~~~aDvV~l~~P~~~~t~~ 212 (529)
T 1ygy_A 142 GKTVGVVG-LGRIGQLVAQRIAAFGA---YVVAY-DPYV-SPARAAQLG--IELLSL-DDLLARADFISVHLPKTPETAG 212 (529)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC---EEEEE-CTTS-CHHHHHHHT--CEECCH-HHHHHHCSEEEECCCCSTTTTT
T ss_pred CCEEEEEe-eCHHHHHHHHHHHhCCC---EEEEE-CCCC-ChhHHHhcC--cEEcCH-HHHHhcCCEEEECCCCchHHHH
Confidence 57999999 79999999999987643 54444 3322 11100 011 111121 12346799999999987 5555
Q ss_pred hHHH-H---HhCCCEEEEcC
Q 023678 117 FGPI-A---VEKGSIVVDNS 132 (279)
Q Consensus 117 ~~~~-~---~~aG~~VIDlS 132 (279)
+..+ . .+.|+.+||.+
T Consensus 213 ~i~~~~~~~~k~g~ilin~a 232 (529)
T 1ygy_A 213 LIDKEALAKTKPGVIIVNAA 232 (529)
T ss_dssp CBCHHHHTTSCTTEEEEECS
T ss_pred HhCHHHHhCCCCCCEEEECC
Confidence 5432 2 45789999987
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.079 Score=48.00 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=41.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---Cce--eeeC----CceeEEee-cCccCCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GKQ--LSFQ----DKAYTVEE-LTEDSFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---G~~--~~~~----~~~~~v~~-~d~~~~~~~DvVf~a~ 109 (279)
|||+|+|| |++|..+...|...+. ..++.++. ++.. +.. +... .....+.. .+.+++.++|+||.|+
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~-g~~V~l~D-~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~l~~aDvViiav 77 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQL-ARELVLLD-VVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITA 77 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEEC-SSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEe-CChhHHHHHHHhHHhhhhcccCCcEEEECCCHHHHCCCCEEEEeC
Confidence 58999997 9999999999987521 34555553 3221 110 0000 01222322 2334588999999999
Q ss_pred CC
Q 023678 110 GG 111 (279)
Q Consensus 110 g~ 111 (279)
|.
T Consensus 78 ~~ 79 (310)
T 1guz_A 78 GL 79 (310)
T ss_dssp SC
T ss_pred CC
Confidence 75
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.049 Score=49.58 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=52.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
.++|+||| .|.+|+.+.+.|...++ ++... +++.. .. .. ....++ .+.+..+|+|++|+|.+. ++.+
T Consensus 124 g~~vgIIG-~G~IG~~~A~~l~~~G~---~V~~~-dr~~~-~~---~~--~~~~~l-~ell~~aDvV~l~~P~~~~t~~~ 191 (303)
T 1qp8_A 124 GEKVAVLG-LGEIGTRVGKILAALGA---QVRGF-SRTPK-EG---PW--RFTNSL-EEALREARAAVCALPLNKHTRGL 191 (303)
T ss_dssp TCEEEEES-CSTHHHHHHHHHHHTTC---EEEEE-CSSCC-CS---SS--CCBSCS-HHHHTTCSEEEECCCCSTTTTTC
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCC---EEEEE-CCCcc-cc---Cc--ccCCCH-HHHHhhCCEEEEeCcCchHHHHH
Confidence 47999999 79999999999987643 54444 33322 11 11 001111 123568999999998763 3333
Q ss_pred HH-H---HHhCCCEEEEcCC
Q 023678 118 GP-I---AVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~~-~---~~~aG~~VIDlS~ 133 (279)
.. . ..+.|+.+||.|.
T Consensus 192 i~~~~l~~mk~gailin~sr 211 (303)
T 1qp8_A 192 VKYQHLALMAEDAVFVNVGR 211 (303)
T ss_dssp BCHHHHTTSCTTCEEEECSC
T ss_pred hCHHHHhhCCCCCEEEECCC
Confidence 31 2 2467999999875
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.035 Score=50.61 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=44.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceeeeC-----CceeEEeecCccCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSFQ-----DKAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~~~-----~~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
+||+|+|| |.||..++-.|..++ ..-+++++.... ..|...... ..+..+..-+.+++.++|+|+.+.+..
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~-~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~ 78 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLG-VAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVA 78 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence 58999997 999999999888764 344666663211 111100000 123344432455688999999998754
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.037 Score=49.57 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=25.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+++|.|.||||++|+.|++.|.++++ +++.+
T Consensus 5 ~~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~ 35 (337)
T 2c29_D 5 SETVCVTGASGFIGSWLVMRLLERGY---TVRAT 35 (337)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998864 44444
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=93.82 E-value=0.031 Score=51.78 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=52.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHH-cCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCch-hh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSI-SK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~-~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~-s~ 115 (279)
.++|+||| .|.+|+.+.+.|. ..++ ++.+. +++....... ........+ +. +.+.++|+|+.|++... .+
T Consensus 163 g~~vgIIG-~G~IG~~vA~~l~~~~G~---~V~~~-d~~~~~~~~~-~~~g~~~~~-~l~ell~~aDvVil~vp~~~~t~ 235 (348)
T 2w2k_A 163 GHVLGAVG-LGAIQKEIARKAVHGLGM---KLVYY-DVAPADAETE-KALGAERVD-SLEELARRSDCVSVSVPYMKLTH 235 (348)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCC---EEEEE-CSSCCCHHHH-HHHTCEECS-SHHHHHHHCSEEEECCCCSGGGT
T ss_pred CCEEEEEE-ECHHHHHHHHHHHHhcCC---EEEEE-CCCCcchhhH-hhcCcEEeC-CHHHHhccCCEEEEeCCCChHHH
Confidence 46899999 7999999999998 7643 54444 3332211100 000112221 22 23467899999998764 33
Q ss_pred hhH----HHHHhCCCEEEEcCCC
Q 023678 116 KFG----PIAVEKGSIVVDNSSA 134 (279)
Q Consensus 116 ~~~----~~~~~aG~~VIDlS~~ 134 (279)
... -...+.|+.+||.|..
T Consensus 236 ~li~~~~l~~mk~gailin~srg 258 (348)
T 2w2k_A 236 HLIDEAFFAAMKPGSRIVNTARG 258 (348)
T ss_dssp TCBCHHHHHHSCTTEEEEECSCG
T ss_pred HHhhHHHHhcCCCCCEEEECCCC
Confidence 222 1234678899987653
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.2 Score=43.25 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~ 34 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAGA---NIVLN 34 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998854 44444
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.05 Score=49.36 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=42.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC---CCceeee------CCceeEEe-ecCccCCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF------QDKAYTVE-ELTEDSFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s---~G~~~~~------~~~~~~v~-~~d~~~~~~~DvVf~a~ 109 (279)
|||+|+|| |.+|..+...|..+++- .++.++ +++. .|..... ......+. ..|.+++.++|+||++.
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~-~~v~L~-D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aDiVViaa 77 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDV-DEIALV-DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCC-SEEEEE-CSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCC-CeEEEE-ECChHHHHHHHHHHHhhhhhcCCCCEEEEeCCHHHhCCCCEEEECC
Confidence 68999998 99999999998877431 255555 3321 1111110 01122333 22356788999999998
Q ss_pred CCc
Q 023678 110 GGS 112 (279)
Q Consensus 110 g~~ 112 (279)
|..
T Consensus 78 g~~ 80 (294)
T 1oju_A 78 GLA 80 (294)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.076 Score=48.86 Aligned_cols=86 Identities=10% Similarity=0.127 Sum_probs=51.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCc-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGS-ISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~-~s~~ 116 (279)
.++|+||| .|.+|+.+.+.|..-| .++..+ +++.. . .. .....+...+. +.+.++|+|++++|.+ .++.
T Consensus 137 gktvGIiG-lG~IG~~vA~~l~~~G---~~V~~~-dr~~~-~-~~--~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~ 207 (324)
T 3evt_A 137 GQQLLIYG-TGQIGQSLAAKASALG---MHVIGV-NTTGH-P-AD--HFHETVAFTATADALATANFIVNALPLTPTTHH 207 (324)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEE-ESSCC-C-CT--TCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTT
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhCC---CEEEEE-CCCcc-h-hH--hHhhccccCCHHHHHhhCCEEEEcCCCchHHHH
Confidence 47999999 7999999999998754 355554 33211 1 10 00111111122 2346799999999854 2333
Q ss_pred hH--HHH--HhCCCEEEEcCC
Q 023678 117 FG--PIA--VEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~--~~~--~~aG~~VIDlS~ 133 (279)
.. ..+ .+.|+.+||.|.
T Consensus 208 li~~~~l~~mk~gailIN~aR 228 (324)
T 3evt_A 208 LFSTELFQQTKQQPMLINIGR 228 (324)
T ss_dssp CBSHHHHHTCCSCCEEEECSC
T ss_pred hcCHHHHhcCCCCCEEEEcCC
Confidence 22 222 357999998874
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.048 Score=48.50 Aligned_cols=88 Identities=18% Similarity=0.230 Sum_probs=50.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeee--CCc-eeEEeecCccCC--CCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF--QDK-AYTVEELTEDSF--DGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~--~~~-~~~v~~~d~~~~--~~~DvVf~a~g~~ 112 (279)
..+|.|+|+ |-+|+.++..|.+.+ .++..+ +|+. ..+.+.. ... .+...++ +++ .++|+||.|+|.+
T Consensus 119 ~~~vlvlGa-Gg~g~a~a~~L~~~G---~~v~v~-~R~~~~a~~l~~~~~~~~~~~~~~~--~~~~~~~~DivIn~t~~~ 191 (272)
T 1p77_A 119 NQHVLILGA-GGATKGVLLPLLQAQ---QNIVLA-NRTFSKTKELAERFQPYGNIQAVSM--DSIPLQTYDLVINATSAG 191 (272)
T ss_dssp TCEEEEECC-SHHHHTTHHHHHHTT---CEEEEE-ESSHHHHHHHHHHHGGGSCEEEEEG--GGCCCSCCSEEEECCCC-
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC---CEEEEE-ECCHHHHHHHHHHccccCCeEEeeH--HHhccCCCCEEEECCCCC
Confidence 468999997 789999999998874 355444 4431 1111110 100 2223332 233 3799999999987
Q ss_pred hhhh---hHHHHHhCCCEEEEcCC
Q 023678 113 ISKK---FGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 113 ~s~~---~~~~~~~aG~~VIDlS~ 133 (279)
.... +.......|..|+|++-
T Consensus 192 ~~~~~~~i~~~~l~~~~~v~D~~y 215 (272)
T 1p77_A 192 LSGGTASVDAEILKLGSAFYDMQY 215 (272)
T ss_dssp ------CCCHHHHHHCSCEEESCC
T ss_pred CCCCCCCCCHHHcCCCCEEEEeeC
Confidence 5422 22344566788888864
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.024 Score=51.17 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=48.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee--CC-ceeEEeecCccCCCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QD-KAYTVEELTEDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~--~~-~~~~v~~~d~~~~~~~DvVf~a~g~~~s 114 (279)
..+|.|+|| |-+|+.++..|.+.+. .++..+ +|+.. .+.+.. .. ..+.+..++.. ..++|+||.|++.+..
T Consensus 126 ~k~vlvlGa-Gg~g~aia~~L~~~G~--~~v~v~-~R~~~~a~~la~~~~~~~~~~~~~~~~l-~~~aDiIInaTp~gm~ 200 (281)
T 3o8q_A 126 GATILLIGA-GGAARGVLKPLLDQQP--ASITVT-NRTFAKAEQLAELVAAYGEVKAQAFEQL-KQSYDVIINSTSASLD 200 (281)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTCC--SEEEEE-ESSHHHHHHHHHHHGGGSCEEEEEGGGC-CSCEEEEEECSCCCC-
T ss_pred CCEEEEECc-hHHHHHHHHHHHhcCC--CeEEEE-ECCHHHHHHHHHHhhccCCeeEeeHHHh-cCCCCEEEEcCcCCCC
Confidence 468999996 7899999999988742 244444 44321 111111 10 01333333211 1578999999998753
Q ss_pred hh---hHHHHHhCCCEEEEcC
Q 023678 115 KK---FGPIAVEKGSIVVDNS 132 (279)
Q Consensus 115 ~~---~~~~~~~aG~~VIDlS 132 (279)
.+ +-...+..|..|+|+.
T Consensus 201 ~~~~~l~~~~l~~~~~V~Dlv 221 (281)
T 3o8q_A 201 GELPAIDPVIFSSRSVCYDMM 221 (281)
T ss_dssp ---CSCCGGGEEEEEEEEESC
T ss_pred CCCCCCCHHHhCcCCEEEEec
Confidence 21 1112234566677765
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.048 Score=48.90 Aligned_cols=90 Identities=10% Similarity=0.141 Sum_probs=49.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceee--eCCceeEEeecCccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS--FQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~--~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
..++.|+|| |-+|+.++..|.+.+. .++..+ +|+.. .+.+. +....+.+..++.-.-.++|+||.|++.+...
T Consensus 120 ~k~~lvlGa-Gg~~~aia~~L~~~G~--~~v~i~-~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~ 195 (272)
T 3pwz_A 120 NRRVLLLGA-GGAVRGALLPFLQAGP--SELVIA-NRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTA 195 (272)
T ss_dssp TSEEEEECC-SHHHHHHHHHHHHTCC--SEEEEE-CSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGT
T ss_pred CCEEEEECc-cHHHHHHHHHHHHcCC--CEEEEE-eCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCC
Confidence 468999996 7889999999988742 244333 44321 11111 01111233332211115789999999987532
Q ss_pred h---hHHHHHhCCCEEEEcC
Q 023678 116 K---FGPIAVEKGSIVVDNS 132 (279)
Q Consensus 116 ~---~~~~~~~aG~~VIDlS 132 (279)
+ +-...+..|..|+|+.
T Consensus 196 ~~~~i~~~~l~~~~~V~Dlv 215 (272)
T 3pwz_A 196 DLPPLPADVLGEAALAYELA 215 (272)
T ss_dssp CCCCCCGGGGTTCSEEEESS
T ss_pred CCCCCCHHHhCcCCEEEEee
Confidence 1 1123345667777764
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=93.73 E-value=0.02 Score=52.07 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=40.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---Cceeee------CCceeEEee-cCccCCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GKQLSF------QDKAYTVEE-LTEDSFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---G~~~~~------~~~~~~v~~-~d~~~~~~~DvVf~a~ 109 (279)
+||+|+|| |.+|..+...|..+++ .++.++ .++.. +..... ......+.. .+.+.+.++|+||.|+
T Consensus 5 ~kI~VIGa-G~~G~~ia~~la~~g~--~~V~l~-D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~a~~~aDiVi~av 80 (317)
T 2ewd_A 5 RKIAVIGS-GQIGGNIAYIVGKDNL--ADVVLF-DIAEGIPQGKALDITHSMVMFGSTSKVIGTDDYADISGSDVVIITA 80 (317)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC--CEEEEE-CSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--ceEEEE-eCCchHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhCCCCEEEEeC
Confidence 79999997 9999999999988754 244444 33221 100000 000112221 2335678999999999
Q ss_pred CC
Q 023678 110 GG 111 (279)
Q Consensus 110 g~ 111 (279)
+.
T Consensus 81 g~ 82 (317)
T 2ewd_A 81 SI 82 (317)
T ss_dssp CC
T ss_pred CC
Confidence 63
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.042 Score=48.58 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=25.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++|.|.||||++|+.|++.|.++++ +++.+
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G~---~V~~~ 31 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGY---SVNTT 31 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CEEEEECChhHHHHHHHHHHHHCCC---EEEEE
Confidence 5799999999999999999998754 45444
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.028 Score=49.86 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=51.4
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecC--ccCCCCCcEEEecCCCchh---
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGSIS--- 114 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~~s--- 114 (279)
+|.|+|| |-+|+.++..|.+.+. .++..+ +|+.. .+.+.. .+.....+ .+.+.++|+||.|++.+..
T Consensus 110 ~vliiGa-Gg~a~ai~~~L~~~G~--~~I~v~-nR~~~ka~~la~---~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~ 182 (253)
T 3u62_A 110 PVVVVGA-GGAARAVIYALLQMGV--KDIWVV-NRTIERAKALDF---PVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEE 182 (253)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTC--CCEEEE-ESCHHHHHTCCS---SCEEEEGGGHHHHHHTCSEEEECSSTTTTSCC
T ss_pred eEEEECc-HHHHHHHHHHHHHcCC--CEEEEE-eCCHHHHHHHHH---HcccCCHHHHHhhhcCCCEEEECCCCCCCCCC
Confidence 7999995 8999999999988753 234333 43211 111111 11111221 1224578999999986543
Q ss_pred hhhHHHHHhCCCEEEEcCCC
Q 023678 115 KKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 115 ~~~~~~~~~aG~~VIDlS~~ 134 (279)
..+....+..|..|+|+...
T Consensus 183 ~~i~~~~l~~~~~V~Divy~ 202 (253)
T 3u62_A 183 LPVSDDSLKNLSLVYDVIYF 202 (253)
T ss_dssp CSCCHHHHTTCSEEEECSSS
T ss_pred CCCCHHHhCcCCEEEEeeCC
Confidence 12334456788899998764
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.02 Score=51.10 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=33.5
Q ss_pred CCCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 22 PRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
||.+-|-+...|...++..+|.|.||+|.+|+++.+.|.++++....++..
T Consensus 16 ~~~~~m~~~~~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~ 66 (287)
T 3rku_A 16 PRGSHMSQGRKAAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILA 66 (287)
T ss_dssp ----CCTTCHHHHHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ecCcccccCccchhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEE
Confidence 444445444444444456789999999999999999998775444565555
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=93.68 E-value=0.07 Score=46.92 Aligned_cols=47 Identities=21% Similarity=0.382 Sum_probs=25.5
Q ss_pred hhhhccCCCCCCCCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 11 THFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.|--+..|.+....+.|++ .+.++|.|.||+|.+|+++.+.|.++++
T Consensus 6 ~~~~~~~~~~~~g~~~m~~-------l~gk~vlVTGas~gIG~aia~~la~~G~ 52 (266)
T 3grp_A 6 HHHMGTLEAQTQGPGSMFK-------LTGRKALVTGATGGIGEAIARCFHAQGA 52 (266)
T ss_dssp ---------------CTTC-------CTTCEEEESSTTSHHHHHHHHHHHHTTC
T ss_pred ccccccccCCCCCCcchhc-------cCCCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 3344444544444444532 2346899999999999999999998753
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.099 Score=45.00 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=26.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 12 ~k~vlVTGasggiG~~~a~~l~~~G~---~V~~~ 42 (265)
T 2o23_A 12 GLVAVITGGASGLGLATAERLVGQGA---SAVLL 42 (265)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 56899999999999999999998854 45555
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.19 Score=43.38 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=26.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+..++.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~ 37 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEGA---TVLGL 37 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 3456899999999999999999998753 44444
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.1 Score=41.17 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=47.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-cc-----CCCCCcEEEecCCCch
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-ED-----SFDGVDIALFSAGGSI 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~-----~~~~~DvVf~a~g~~~ 113 (279)
.+|.|+|+ |.+|+.+.+.|.+++++ ++.+......-..+...+......+.. ++ ...++|+++.|++.+.
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g~~---v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~ 83 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASDIP---LVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGY 83 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCC---EEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHH
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChH
Confidence 57999995 99999999999987653 444532111001111112222222322 11 2357899999999875
Q ss_pred hhh-hHHHHHh--CCCEEE
Q 023678 114 SKK-FGPIAVE--KGSIVV 129 (279)
Q Consensus 114 s~~-~~~~~~~--aG~~VI 129 (279)
... .+..+.+ .+.+||
T Consensus 84 ~n~~~~~~a~~~~~~~~ii 102 (140)
T 3fwz_A 84 EAGEIVASARAKNPDIEII 102 (140)
T ss_dssp HHHHHHHHHHHHCSSSEEE
T ss_pred HHHHHHHHHHHHCCCCeEE
Confidence 433 3333322 355666
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.053 Score=49.17 Aligned_cols=84 Identities=13% Similarity=0.223 Sum_probs=51.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCc-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGS-ISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~-~s~~ 116 (279)
.++|+|+| .|.+|+.+.+.|..-+ .++..+ +++.... . ..... .+. +.+.++|+|++|+|.+ .++.
T Consensus 122 g~tvGIIG-lG~IG~~vA~~l~~~G---~~V~~~-dr~~~~~--~----~~~~~-~~l~ell~~aDiV~l~~P~t~~t~~ 189 (290)
T 3gvx_A 122 GKALGILG-YGGIGRRVAHLAKAFG---MRVIAY-TRSSVDQ--N----VDVIS-ESPADLFRQSDFVLIAIPLTDKTRG 189 (290)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHHT---CEEEEE-CSSCCCT--T----CSEEC-SSHHHHHHHCSEEEECCCCCTTTTT
T ss_pred cchheeec-cCchhHHHHHHHHhhC---cEEEEE-ecccccc--c----ccccc-CChHHHhhccCeEEEEeeccccchh
Confidence 47999999 7999999999998654 355555 3322111 0 01111 022 2346799999999953 2332
Q ss_pred hH-HH---HHhCCCEEEEcCCC
Q 023678 117 FG-PI---AVEKGSIVVDNSSA 134 (279)
Q Consensus 117 ~~-~~---~~~aG~~VIDlS~~ 134 (279)
.. .. ..+.|+.+||.|..
T Consensus 190 li~~~~l~~mk~gailIN~aRG 211 (290)
T 3gvx_A 190 MVNSRLLANARKNLTIVNVARA 211 (290)
T ss_dssp CBSHHHHTTCCTTCEEEECSCG
T ss_pred hhhHHHHhhhhcCceEEEeehh
Confidence 22 22 24679999988743
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.051 Score=44.96 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=24.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+|||.|.||+|.+|+++++.|. +++ +++.+
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g~---~V~~~ 32 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KKA---EVITA 32 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TTS---EEEEE
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CCC---eEEEE
Confidence 4689999999999999999999 754 44444
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.047 Score=50.17 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=40.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---C--ceeee----CCceeEEee-cCcc-CCCCCcEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---G--KQLSF----QDKAYTVEE-LTED-SFDGVDIALF 107 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---G--~~~~~----~~~~~~v~~-~d~~-~~~~~DvVf~ 107 (279)
++||+|+|| |.+|..+...|...+| +++.++ +++.. + ..+.. ......+.. .|.+ ++.++|+||.
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~--~~V~L~-D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~ 84 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALREL--ADVVLY-DVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIV 84 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC--CEEEEE-CSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEE-ECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEE
Confidence 579999997 9999999999988754 344444 33221 1 00000 011112221 2322 5789999999
Q ss_pred cCCC
Q 023678 108 SAGG 111 (279)
Q Consensus 108 a~g~ 111 (279)
+.+.
T Consensus 85 a~g~ 88 (331)
T 1pzg_A 85 TAGL 88 (331)
T ss_dssp CCSC
T ss_pred ccCC
Confidence 9853
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.015 Score=52.42 Aligned_cols=88 Identities=14% Similarity=0.204 Sum_probs=47.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecC--ccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~~s~ 115 (279)
..+|.|+|+ |-+|+.++..|.+.+.. ++..+ +|+.. .+.+.. .+....++ .+.+.++|+||.|++.+...
T Consensus 117 ~k~vlvlGa-Gg~g~aia~~L~~~G~~--~v~v~-~R~~~~a~~la~---~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~ 189 (277)
T 3don_A 117 DAYILILGA-GGASKGIANELYKIVRP--TLTVA-NRTMSRFNNWSL---NINKINLSHAESHLDEFDIIINTTPAGMNG 189 (277)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHTTCCS--CCEEE-CSCGGGGTTCCS---CCEEECHHHHHHTGGGCSEEEECCC-----
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCC--EEEEE-eCCHHHHHHHHH---hcccccHhhHHHHhcCCCEEEECccCCCCC
Confidence 368999996 88999999999987543 33333 44321 111111 12222211 12246789999999876432
Q ss_pred h----hHHHHHhCCCEEEEcCC
Q 023678 116 K----FGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 116 ~----~~~~~~~aG~~VIDlS~ 133 (279)
. +-...+..|..|+|++.
T Consensus 190 ~~~~~l~~~~l~~~~~V~D~vY 211 (277)
T 3don_A 190 NTDSVISLNRLASHTLVSDIVY 211 (277)
T ss_dssp --CCSSCCTTCCSSCEEEESCC
T ss_pred CCcCCCCHHHcCCCCEEEEecC
Confidence 2 11122356677777754
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.056 Score=47.25 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=33.8
Q ss_pred ccCCCCCCCCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 15 SKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
-++|.+.|...++-.. .| .++.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 13 ~~~~~~~~~~~~~~~~-~~--~l~~k~vlITGasggIG~~la~~L~~~G~---~V~~~ 64 (279)
T 3ctm_A 13 GPLPTKAPTLSKNVLD-LF--SLKGKVASVTGSSGGIGWAVAEAYAQAGA---DVAIW 64 (279)
T ss_dssp CSSSCCCCCCCSSGGG-GG--CCTTCEEEETTTTSSHHHHHHHHHHHHTC---EEEEE
T ss_pred cCCCCCcccccccccc-cc--CCCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 4556555444432211 11 23457899999999999999999998753 45444
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.13 Score=44.29 Aligned_cols=32 Identities=6% Similarity=0.119 Sum_probs=26.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 36 (246)
T 2ag5_A 5 DGKVIILTAAAQGIGQAAALAFAREGA---KVIAT 36 (246)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 346899999999999999999998854 45444
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.18 Score=43.30 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
+.++|.|.||+|.+|+++.+.|.++++
T Consensus 4 ~~k~vlVtGas~gIG~~~a~~l~~~G~ 30 (254)
T 1sby_A 4 TNKNVIFVAALGGIGLDTSRELVKRNL 30 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCC
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC
Confidence 356899999999999999999998854
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.069 Score=48.59 Aligned_cols=86 Identities=12% Similarity=0.175 Sum_probs=52.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccCCCCCcEEEecCCCch-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~ 116 (279)
.++|+|+| .|.+|+.+.+.|...+ .++..+ +++. .+... ..+ ....++ .+.+.++|+|+.|+|.+. ++.
T Consensus 142 g~~vgIiG-~G~IG~~~A~~l~~~G---~~V~~~-d~~~-~~~~~~~~g--~~~~~l-~ell~~aDvV~l~~p~~~~t~~ 212 (307)
T 1wwk_A 142 GKTIGIIG-FGRIGYQVAKIANALG---MNILLY-DPYP-NEERAKEVN--GKFVDL-ETLLKESDVVTIHVPLVESTYH 212 (307)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEE-CSSC-CHHHHHHTT--CEECCH-HHHHHHCSEEEECCCCSTTTTT
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCC---CEEEEE-CCCC-ChhhHhhcC--ccccCH-HHHHhhCCEEEEecCCChHHhh
Confidence 46999999 7999999999998764 355444 3322 11110 111 122221 123457899999998654 222
Q ss_pred hH----HHHHhCCCEEEEcCC
Q 023678 117 FG----PIAVEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~----~~~~~aG~~VIDlS~ 133 (279)
+. -...+.|+.+||.+.
T Consensus 213 li~~~~l~~mk~ga~lin~ar 233 (307)
T 1wwk_A 213 LINEERLKLMKKTAILINTSR 233 (307)
T ss_dssp CBCHHHHHHSCTTCEEEECSC
T ss_pred hcCHHHHhcCCCCeEEEECCC
Confidence 22 123467999998875
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.098 Score=45.78 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=25.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+++|.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 5 ~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~ 35 (281)
T 3m1a_A 5 AKVWLVTGASSGFGRAIAEAAVAAGD---TVIGT 35 (281)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 55444
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.04 Score=51.19 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=49.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecCc----cCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELTE----DSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~----~~~~~~DvVf~a~g~~ 112 (279)
..+|+|+|+ |.+|+.+++.+...++ ++.++ +++... ..... .+..+.....+. +.+.++|+||.|++..
T Consensus 166 ~~~V~ViGa-G~iG~~~a~~l~~~Ga---~V~~~-d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~ 240 (369)
T 2eez_A 166 PASVVILGG-GTVGTNAAKIALGMGA---QVTIL-DVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVP 240 (369)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-ESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC--
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---EEEEE-ECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCC
Confidence 479999998 9999999999988753 54444 332110 00100 111221111111 1235789999999854
Q ss_pred h-------hhhhHHHHHhCCCEEEEcCCC
Q 023678 113 I-------SKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 113 ~-------s~~~~~~~~~aG~~VIDlS~~ 134 (279)
. .++..+ ..+.|..+||.+.+
T Consensus 241 ~~~~~~li~~~~l~-~mk~gg~iV~v~~~ 268 (369)
T 2eez_A 241 GAKAPKLVTRDMLS-LMKEGAVIVDVAVD 268 (369)
T ss_dssp -----CCSCHHHHT-TSCTTCEEEECC--
T ss_pred ccccchhHHHHHHH-hhcCCCEEEEEecC
Confidence 3 233332 23568889998864
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=93.34 E-value=0.089 Score=48.58 Aligned_cols=72 Identities=21% Similarity=0.326 Sum_probs=42.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCce--ee----eCCceeEEeecCccCCCCCcEEEecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQ--LS----FQDKAYTVEELTEDSFDGVDIALFSA 109 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~--~~----~~~~~~~v~~~d~~~~~~~DvVf~a~ 109 (279)
+.+||+|+|| |.+|..+...|..+++. .+++++.-.. ..|.. +. +......+..-+.+++.++|+||.+.
T Consensus 18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~-~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~~~~aDiVvi~a 95 (331)
T 4aj2_A 18 PQNKITVVGV-GAVGMACAISILMKDLA-DELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITA 95 (331)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCC-SEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGGGTTEEEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCC-ceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHHhCCCCEEEEcc
Confidence 3579999997 99999999888877421 2555553211 11111 11 11111112222445688999999998
Q ss_pred CC
Q 023678 110 GG 111 (279)
Q Consensus 110 g~ 111 (279)
|.
T Consensus 96 G~ 97 (331)
T 4aj2_A 96 GA 97 (331)
T ss_dssp SC
T ss_pred CC
Confidence 74
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.089 Score=48.88 Aligned_cols=86 Identities=19% Similarity=0.298 Sum_probs=51.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCCCCCcEEEecCCCch-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGSI-SKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~~-s~~ 116 (279)
.++|+||| .|.+|+.+.+.|..-+ .++.+. ++........ .+ .... ++ .+.+..+|+|++++|.+. ++.
T Consensus 173 gktvGIIG-lG~IG~~vA~~l~~~G---~~V~~~-dr~~~~~~~~-~g--~~~~~~l-~ell~~sDvV~l~~Plt~~T~~ 243 (345)
T 4g2n_A 173 GRRLGIFG-MGRIGRAIATRARGFG---LAIHYH-NRTRLSHALE-EG--AIYHDTL-DSLLGASDIFLIAAPGRPELKG 243 (345)
T ss_dssp TCEEEEES-CSHHHHHHHHHHHTTT---CEEEEE-CSSCCCHHHH-TT--CEECSSH-HHHHHTCSEEEECSCCCGGGTT
T ss_pred CCEEEEEE-eChhHHHHHHHHHHCC---CEEEEE-CCCCcchhhh-cC--CeEeCCH-HHHHhhCCEEEEecCCCHHHHH
Confidence 47999999 7999999999998653 355444 3332111111 11 1121 21 123468999999999542 222
Q ss_pred hH--H--HHHhCCCEEEEcCC
Q 023678 117 FG--P--IAVEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~--~--~~~~aG~~VIDlS~ 133 (279)
.. . ...+.|+.+||.+.
T Consensus 244 li~~~~l~~mk~gailIN~aR 264 (345)
T 4g2n_A 244 FLDHDRIAKIPEGAVVINISR 264 (345)
T ss_dssp CBCHHHHHHSCTTEEEEECSC
T ss_pred HhCHHHHhhCCCCcEEEECCC
Confidence 22 1 22467999998774
|
| >3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.077 Score=51.12 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=31.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC-CCc-eEEEEEeecCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD-FPY-RSIKMLASKRS 77 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~-~p~-~~l~~l~s~~s 77 (279)
++|.+|+|+|+||-+|.+-|+.+.++. ||+ +++++++..+.
T Consensus 75 ~~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg~N 117 (488)
T 3au8_A 75 KKPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKS 117 (488)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEESSC
T ss_pred hcceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcCCC
Confidence 345789999999999999999998842 355 89998876544
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.28 Score=49.81 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=56.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC----Cce---------eeeC----------CceeEEeecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA----GKQ---------LSFQ----------DKAYTVEELT 95 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~----G~~---------~~~~----------~~~~~v~~~d 95 (279)
++||+||| .|..|..+...|.+.+|+ ++++ .++.. ++. +..+ ...+... .+
T Consensus 312 ~~kV~VIG-aG~MG~~iA~~la~aG~~---V~l~-D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d 385 (725)
T 2wtb_A 312 IKKVAIIG-GGLMGSGIATALILSNYP---VILK-EVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGS-LD 385 (725)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHTTTCC---EEEE-CSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEE-SS
T ss_pred CcEEEEEc-CCHhhHHHHHHHHhCCCE---EEEE-ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEe-CC
Confidence 46899999 599999999999988764 3333 22211 000 0000 0012222 23
Q ss_pred ccCCCCCcEEEecCCCchh--hhhHH---HHHhCCCEEEEcCCCCC
Q 023678 96 EDSFDGVDIALFSAGGSIS--KKFGP---IAVEKGSIVVDNSSAFR 136 (279)
Q Consensus 96 ~~~~~~~DvVf~a~g~~~s--~~~~~---~~~~aG~~VIDlS~~~R 136 (279)
.+.+.++|+||.|++.... +++.. .++..|+.++++++..-
T Consensus 386 ~~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~ 431 (725)
T 2wtb_A 386 YESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTID 431 (725)
T ss_dssp SGGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSC
T ss_pred HHHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCC
Confidence 3457899999999998753 23333 33457888889988763
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.063 Score=48.54 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=25.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|++|.|.||||++|+.+++.|.++++ +++.+
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~ 31 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGY---EVHGI 31 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 36899999999999999999998753 55555
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.059 Score=49.58 Aligned_cols=85 Identities=13% Similarity=0.174 Sum_probs=51.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCc-hhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS-ISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~-~s~~~ 117 (279)
.++|+||| .|.+|+.+.+.|...++ ++... +++. ...... .......++ .+.+.++|+|++|+|.. ..+..
T Consensus 146 g~~vgIIG-~G~iG~~vA~~l~~~G~---~V~~~-d~~~-~~~~~~-~~g~~~~~l-~e~l~~aDiVil~vp~~~~t~~~ 217 (333)
T 2d0i_A 146 GKKVGILG-MGAIGKAIARRLIPFGV---KLYYW-SRHR-KVNVEK-ELKARYMDI-DELLEKSDIVILALPLTRDTYHI 217 (333)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGTC---EEEEE-CSSC-CHHHHH-HHTEEECCH-HHHHHHCSEEEECCCCCTTTTTS
T ss_pred cCEEEEEc-cCHHHHHHHHHHHHCCC---EEEEE-CCCc-chhhhh-hcCceecCH-HHHHhhCCEEEEcCCCChHHHHH
Confidence 47999999 79999999999987643 54444 3322 211100 001222221 12346789999999987 33333
Q ss_pred H----HHHHhCCCEEEEcC
Q 023678 118 G----PIAVEKGSIVVDNS 132 (279)
Q Consensus 118 ~----~~~~~aG~~VIDlS 132 (279)
. -...+.| .+||.|
T Consensus 218 i~~~~~~~mk~g-ilin~s 235 (333)
T 2d0i_A 218 INEERVKKLEGK-YLVNIG 235 (333)
T ss_dssp BCHHHHHHTBTC-EEEECS
T ss_pred hCHHHHhhCCCC-EEEECC
Confidence 2 1235678 888877
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.25 E-value=0.27 Score=42.71 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=27.8
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|...++..++.|.||+|.+|+++.+.|.++++ +++++
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~ 41 (264)
T 3ucx_A 5 MGGLLTDKVVVISGVGPALGTTLARRCAEQGA---DLVLA 41 (264)
T ss_dssp --CTTTTCEEEEESCCTTHHHHHHHHHHHTTC---EEEEE
T ss_pred cCCCcCCcEEEEECCCcHHHHHHHHHHHHCcC---EEEEE
Confidence 44444567899999999999999999998754 44444
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.08 Score=48.28 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=52.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccCCCCCcEEEecCCCch-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~ 116 (279)
.++|+||| .|.+|+.+.+.|...+ .++..+ +++. .+... ..+ ....++ .+.+.++|+|+.|+|.+. .+.
T Consensus 142 g~~vgIIG-~G~IG~~~A~~l~~~G---~~V~~~-d~~~-~~~~~~~~g--~~~~~l-~ell~~aDvVvl~~P~~~~t~~ 212 (313)
T 2ekl_A 142 GKTIGIVG-FGRIGTKVGIIANAMG---MKVLAY-DILD-IREKAEKIN--AKAVSL-EELLKNSDVISLHVTVSKDAKP 212 (313)
T ss_dssp TCEEEEES-CSHHHHHHHHHHHHTT---CEEEEE-CSSC-CHHHHHHTT--CEECCH-HHHHHHCSEEEECCCCCTTSCC
T ss_pred CCEEEEEe-eCHHHHHHHHHHHHCC---CEEEEE-CCCc-chhHHHhcC--ceecCH-HHHHhhCCEEEEeccCChHHHH
Confidence 57999999 7999999999998764 355444 3322 21110 111 112121 123457899999998654 222
Q ss_pred hH----HHHHhCCCEEEEcCC
Q 023678 117 FG----PIAVEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~----~~~~~aG~~VIDlS~ 133 (279)
+. -...+.|+.+||.+.
T Consensus 213 li~~~~l~~mk~ga~lIn~ar 233 (313)
T 2ekl_A 213 IIDYPQFELMKDNVIIVNTSR 233 (313)
T ss_dssp SBCHHHHHHSCTTEEEEESSC
T ss_pred hhCHHHHhcCCCCCEEEECCC
Confidence 21 133567999998875
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.061 Score=48.94 Aligned_cols=69 Identities=22% Similarity=0.387 Sum_probs=42.0
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCcee--ee----CCceeEEee-cCccCCCCCcEEEecCCC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQL--SF----QDKAYTVEE-LTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~--~~----~~~~~~v~~-~d~~~~~~~DvVf~a~g~ 111 (279)
||+|+|| |.+|..++-.|...++ -+++++..... .|... .. ......+.. .+.+++.++|+|+.+.+.
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l--~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aD~Vi~~ag~ 77 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGY--DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGI 77 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTC--SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHHHhCCCCEEEEeCCC
Confidence 6999997 9999999988877654 35666532211 11100 00 011223433 344578899999999775
Q ss_pred c
Q 023678 112 S 112 (279)
Q Consensus 112 ~ 112 (279)
.
T Consensus 78 ~ 78 (308)
T 2d4a_B 78 G 78 (308)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=93.17 E-value=0.055 Score=49.58 Aligned_cols=85 Identities=12% Similarity=0.164 Sum_probs=51.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEee-cC-ccCCCCCcEEEecCCCc-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LT-EDSFDGVDIALFSAGGS-ISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~-~d-~~~~~~~DvVf~a~g~~-~s~ 115 (279)
.++|+||| .|.+|+.+.+.|...++ ++... +++.. . . .+.. .... .+ .+.+..+|+|++++|.+ .++
T Consensus 139 g~tvGIiG-~G~IG~~vA~~l~~~G~---~V~~~-dr~~~-~-~--~~~~-~~~~~~~l~ell~~aDiV~l~~Plt~~t~ 208 (315)
T 3pp8_A 139 EFSVGIMG-AGVLGAKVAESLQAWGF---PLRCW-SRSRK-S-W--PGVE-SYVGREELRAFLNQTRVLINLLPNTAQTV 208 (315)
T ss_dssp TCCEEEEC-CSHHHHHHHHHHHTTTC---CEEEE-ESSCC-C-C--TTCE-EEESHHHHHHHHHTCSEEEECCCCCGGGT
T ss_pred CCEEEEEe-eCHHHHHHHHHHHHCCC---EEEEE-cCCch-h-h--hhhh-hhcccCCHHHHHhhCCEEEEecCCchhhh
Confidence 47899999 79999999999987654 44444 33221 1 0 0101 1111 11 12356899999999854 333
Q ss_pred hhH-HHH---HhCCCEEEEcCC
Q 023678 116 KFG-PIA---VEKGSIVVDNSS 133 (279)
Q Consensus 116 ~~~-~~~---~~aG~~VIDlS~ 133 (279)
.+. ... .+.|+.+||.+.
T Consensus 209 ~li~~~~l~~mk~gailIN~aR 230 (315)
T 3pp8_A 209 GIINSELLDQLPDGAYVLNLAR 230 (315)
T ss_dssp TCBSHHHHTTSCTTEEEEECSC
T ss_pred hhccHHHHhhCCCCCEEEECCC
Confidence 333 222 357889998764
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=93.14 E-value=0.11 Score=44.90 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 15 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 45 (247)
T 1uzm_A 15 SRSVLVTGGNRGIGLAIAQRLAADGH---KVAVT 45 (247)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998753 45444
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.077 Score=48.46 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=25.8
Q ss_pred CEEEEECcCcHHHHHHHHHHH-cCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~-~~~~p~~~l~~l~ 73 (279)
|+|.|.||||++|+.|++.|. ++++ +++.+.
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g~---~V~~~~ 34 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTNH---SVVIVD 34 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC---EEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCC---EEEEEe
Confidence 589999999999999999998 8753 555553
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.066 Score=47.79 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|+|.|.||||++|+.+++.|.++++ +++.+
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~---~V~~~ 30 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVIIL 30 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 4899999999999999999998754 45444
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.087 Score=48.53 Aligned_cols=86 Identities=12% Similarity=0.184 Sum_probs=50.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCch-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSI-SKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~-s~~ 116 (279)
.++|+||| .|.+|+.+.+.|..-++ ++... +++.. ....+ .......+. +.+..+|+|++++|.+. ++.
T Consensus 140 g~tvGIIG-lG~IG~~vA~~l~~~G~---~V~~~-dr~~~-~~~~~---~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~ 210 (324)
T 3hg7_A 140 GRTLLILG-TGSIGQHIAHTGKHFGM---KVLGV-SRSGR-ERAGF---DQVYQLPALNKMLAQADVIVSVLPATRETHH 210 (324)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSSCC-CCTTC---SEEECGGGHHHHHHTCSEEEECCCCCSSSTT
T ss_pred cceEEEEE-ECHHHHHHHHHHHhCCC---EEEEE-cCChH-Hhhhh---hcccccCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence 47999999 89999999999987543 55444 33221 10000 111111121 23568999999998542 222
Q ss_pred hH--H--HHHhCCCEEEEcCC
Q 023678 117 FG--P--IAVEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~--~--~~~~aG~~VIDlS~ 133 (279)
.. . ...+.|+.+||.+.
T Consensus 211 li~~~~l~~mk~gailIN~aR 231 (324)
T 3hg7_A 211 LFTASRFEHCKPGAILFNVGR 231 (324)
T ss_dssp SBCTTTTTCSCTTCEEEECSC
T ss_pred HhHHHHHhcCCCCcEEEECCC
Confidence 21 1 12467999998774
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.047 Score=50.47 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=52.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
.++|+||| .|.+|+.+.+.|...+ .++..+ +++.........+ ....++ .+.+.++|+|++|+|... ++.+
T Consensus 165 g~tvgIIG-lG~IG~~vA~~l~~~G---~~V~~~-d~~~~~~~~~~~g--~~~~~l-~ell~~aDvV~l~~P~t~~t~~l 236 (335)
T 2g76_A 165 GKTLGILG-LGRIGREVATRMQSFG---MKTIGY-DPIISPEVSASFG--VQQLPL-EEIWPLCDFITVHTPLLPSTTGL 236 (335)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTT---CEEEEE-CSSSCHHHHHHTT--CEECCH-HHHGGGCSEEEECCCCCTTTTTS
T ss_pred cCEEEEEe-ECHHHHHHHHHHHHCC---CEEEEE-CCCcchhhhhhcC--ceeCCH-HHHHhcCCEEEEecCCCHHHHHh
Confidence 57999999 7999999999998653 455444 3322111000111 112122 133568999999999764 3333
Q ss_pred H-HH---HHhCCCEEEEcCC
Q 023678 118 G-PI---AVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~-~~---~~~aG~~VIDlS~ 133 (279)
. .. ..+.|+.+||.+.
T Consensus 237 i~~~~l~~mk~gailIN~ar 256 (335)
T 2g76_A 237 LNDNTFAQCKKGVRVVNCAR 256 (335)
T ss_dssp BCHHHHTTSCTTEEEEECSC
T ss_pred hCHHHHhhCCCCcEEEECCC
Confidence 2 12 2457889998875
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.00 E-value=0.17 Score=44.09 Aligned_cols=31 Identities=6% Similarity=0.248 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 36 (278)
T 1spx_A 6 EKVAIITGSSNGIGRATAVLFAREGA---KVTIT 36 (278)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46799999999999999999998754 45444
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.081 Score=45.55 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=28.9
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|+..++..+|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 1 m~~~~~~k~vlITGasggiG~~la~~l~~~G~---~V~~~ 37 (264)
T 2pd6_A 1 MQNRLRSALALVTGAGSGIGRAVSVRLAGEGA---TVAAC 37 (264)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CccccCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 34445567899999999999999999998753 55554
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=92.97 E-value=0.077 Score=45.90 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=25.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++++.|.++++ +++.+
T Consensus 14 ~k~vlITGasggiG~~la~~l~~~G~---~V~~~ 44 (266)
T 1xq1_A 14 AKTVLVTGGTKGIGHAIVEEFAGFGA---VIHTC 44 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998854 45444
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.095 Score=48.65 Aligned_cols=85 Identities=11% Similarity=0.201 Sum_probs=51.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
.++|+||| .|.+|+.+.+.|..-+ .++..+ +++. .... .. .....++ .+.+..+|+|++++|.+. ++..
T Consensus 148 gktvgIiG-lG~IG~~vA~~l~~~G---~~V~~~-d~~~-~~~~--~~-~~~~~~l-~ell~~aDvV~l~~Plt~~t~~l 217 (343)
T 2yq5_A 148 NLTVGLIG-VGHIGSAVAEIFSAMG---AKVIAY-DVAY-NPEF--EP-FLTYTDF-DTVLKEADIVSLHTPLFPSTENM 217 (343)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEE-CSSC-CGGG--TT-TCEECCH-HHHHHHCSEEEECCCCCTTTTTC
T ss_pred CCeEEEEe-cCHHHHHHHHHHhhCC---CEEEEE-CCCh-hhhh--hc-cccccCH-HHHHhcCCEEEEcCCCCHHHHHH
Confidence 46999999 7999999999998653 355544 3322 1111 11 1122222 123467999999999542 2222
Q ss_pred H--H--HHHhCCCEEEEcCC
Q 023678 118 G--P--IAVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~--~--~~~~aG~~VIDlS~ 133 (279)
. . ...+.|+.+||.+.
T Consensus 218 i~~~~l~~mk~gailIN~aR 237 (343)
T 2yq5_A 218 IGEKQLKEMKKSAYLINCAR 237 (343)
T ss_dssp BCHHHHHHSCTTCEEEECSC
T ss_pred hhHHHHhhCCCCcEEEECCC
Confidence 1 1 22468999998874
|
| >2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A | Back alignment and structure |
|---|
Probab=92.96 E-value=0.13 Score=48.55 Aligned_cols=89 Identities=21% Similarity=0.261 Sum_probs=55.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEee-cCCCCceee----eCCceeEEee--------------cC-c-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLAS-KRSAGKQLS----FQDKAYTVEE--------------LT-E- 96 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s-~~s~G~~~~----~~~~~~~v~~--------------~d-~- 96 (279)
|.||+|+|+||-||.+-|+.+.++ |+ +++++++. .+....... |.-+-+.+.+ .+ .
T Consensus 21 mk~i~ILGSTGSIGtqtLdVi~~~--pd~f~V~aLaa~g~nv~~L~~q~~~f~p~~v~v~d~~~~~~~~~~v~~G~~~l~ 98 (398)
T 2y1e_A 21 RLRVVVLGSTGSIGTQALQVIADN--PDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDAAT 98 (398)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC--TTTEEEEEEEECSSCHHHHHHHHHHHCCCCEEESCHHHHHHHCCCSEESTTHHH
T ss_pred ceEEEEEccCcHHHHHHHHHHHhC--CCceEEEEEEecCCCHHHHHHHHHHcCCCEEEEcCHHHhhhcCCEEEecHHHHH
Confidence 467999999999999999999887 76 89999876 544322111 1101111111 01 0
Q ss_pred c--CCCCCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 97 D--SFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 97 ~--~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
+ ...++|+|+.|.-....-.---.++++|..|-
T Consensus 99 ~~a~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~ia 133 (398)
T 2y1e_A 99 RLVEQTEADVVLNALVGALGLRPTLAALKTGARLA 133 (398)
T ss_dssp HHHHHSCCSEEEECCCSGGGHHHHHHHHHHTCEEE
T ss_pred HHhcCCCCCEEEEeCcCHHHHHHHHHHHHCCCceE
Confidence 0 12468999999766555444445677887653
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.063 Score=47.62 Aligned_cols=87 Identities=14% Similarity=0.232 Sum_probs=48.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC-Cc--eeEEeecCccCC--CCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-DK--AYTVEELTEDSF--DGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~-~~--~~~v~~~d~~~~--~~~DvVf~a~g~~ 112 (279)
..+|.|+|| |-+|+.+++.|.+.+ .++..+ +|+.. .+.+... +. .+.+.+. +++ .++|+++.|+|..
T Consensus 119 ~k~vlViGa-Gg~g~a~a~~L~~~G---~~V~v~-~R~~~~~~~la~~~~~~~~~~~~~~--~~~~~~~~DivVn~t~~~ 191 (271)
T 1nyt_A 119 GLRILLIGA-GGASRGVLLPLLSLD---CAVTIT-NRTVSRAEELAKLFAHTGSIQALSM--DELEGHEFDLIINATSSG 191 (271)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---CEEEEE-CSSHHHHHHHHHHTGGGSSEEECCS--GGGTTCCCSEEEECCSCG
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcC---CEEEEE-ECCHHHHHHHHHHhhccCCeeEecH--HHhccCCCCEEEECCCCC
Confidence 468999997 779999999999874 354444 43311 1111100 00 2222222 222 4799999999976
Q ss_pred hhhh---hHHHHHhCCCEEEEcC
Q 023678 113 ISKK---FGPIAVEKGSIVVDNS 132 (279)
Q Consensus 113 ~s~~---~~~~~~~aG~~VIDlS 132 (279)
.... +-......|..|+|+.
T Consensus 192 ~~~~~~~i~~~~l~~~~~v~D~~ 214 (271)
T 1nyt_A 192 ISGDIPAIPSSLIHPGIYCYDMF 214 (271)
T ss_dssp GGTCCCCCCGGGCCTTCEEEESC
T ss_pred CCCCCCCCCHHHcCCCCEEEEec
Confidence 5421 1112234556666654
|
| >1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A | Back alignment and structure |
|---|
Probab=92.89 E-value=0.13 Score=48.78 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=32.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRS 77 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s 77 (279)
|.+|+|+|+||-||.+-|+.+.++ |+ +++++++..+.
T Consensus 9 ~k~i~ILGSTGSIGtqtLdVi~~~--pd~f~V~aL~ag~n 46 (406)
T 1q0q_A 9 MKQLTILGSTGSIGCSTLDVVRHN--PEHFRVVALVAGKN 46 (406)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC--TTTEEEEEEEESSC
T ss_pred ceeEEEEccCcHHHHHHHHHHHhC--CCccEEEEEEcCCC
Confidence 568999999999999999999887 76 89999876544
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.15 Score=44.21 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=27.1
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|+..++..++.|.||+|.+|+++.+.|.++|+ +++++
T Consensus 1 M~~~~~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~ 37 (252)
T 3h7a_A 1 MSLTPRNATVAVIGAGDYIGAEIAKKFAAEGF---TVFAG 37 (252)
T ss_dssp ----CCSCEEEEECCSSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCcCCCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 34444567899999999999999999998854 45444
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.16 Score=48.91 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=22.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP 65 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p 65 (279)
.|.+|+||| .||||.-+.-.|++.+|.
T Consensus 20 ~m~~IaViG-lGYVGLp~A~~~A~~G~~ 46 (444)
T 3vtf_A 20 HMASLSVLG-LGYVGVVHAVGFALLGHR 46 (444)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHTCE
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCCc
Confidence 357999999 899999999999877653
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.11 Score=49.57 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=28.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~ 73 (279)
++++|.|.||||++|++|++.|.+++ + ..+++.+.
T Consensus 72 ~~~~VLVTGatG~IG~~l~~~Ll~~~-~~g~~V~~l~ 107 (478)
T 4dqv_A 72 ELRTVLLTGATGFLGRYLVLELLRRL-DVDGRLICLV 107 (478)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHHS-CTTCEEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhcC-CCCCEEEEEE
Confidence 46899999999999999999998762 2 35766664
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.1 Score=44.34 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=25.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++|.|.||||++|+++++.|.++++ +++.+
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~---~V~~~ 31 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGH---TVIGI 31 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCC---EEEEE
Confidence 4799999999999999999998754 45555
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.13 Score=44.51 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 6 ~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~ 36 (253)
T 1hxh_A 6 GKVALVTGGASGVGLEVVKLLLGEGA---KVAFS 36 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 44444
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=92.54 E-value=0.16 Score=44.74 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=54.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee---------------cCCCCceeee----------CCceeEEee
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS---------------KRSAGKQLSF----------QDKAYTVEE 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s---------------~~s~G~~~~~----------~~~~~~v~~ 93 (279)
..+|.|+|+ |-+|.++++.|...|.. ++.++.. ....|+.-.. .+..+...+
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~Gvg--~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 104 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAGVG--TLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ 104 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCS--EEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcCCC--eEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 368999997 55899999999987543 4444411 1122321110 111222221
Q ss_pred --cCcc----CCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 94 --LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 94 --~d~~----~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
++.+ .+.++|+|+.|++...++....++ .+.|..+|+.+
T Consensus 105 ~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~ 150 (251)
T 1zud_1 105 QRLTGEALKDAVARADVVLDCTDNMATRQEINAACVALNTPLITAS 150 (251)
T ss_dssp SCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 2211 235689999999987776666554 56888888754
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.16 Score=46.69 Aligned_cols=85 Identities=21% Similarity=0.292 Sum_probs=52.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchh-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS-KKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s-~~~ 117 (279)
.++|+|+| .|.+|+.+.+.|..-+ .++.++ +++.. +... .. ....++ .+.+..+|+|++|+|.+.. +.+
T Consensus 145 g~~vgIiG-~G~IG~~~A~~l~~~G---~~V~~~-d~~~~-~~~~-~~--~~~~~l-~ell~~aDvV~~~~P~~~~t~~l 214 (333)
T 1dxy_A 145 QQTVGVMG-TGHIGQVAIKLFKGFG---AKVIAY-DPYPM-KGDH-PD--FDYVSL-EDLFKQSDVIDLHVPGIEQNTHI 214 (333)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEE-CSSCC-SSCC-TT--CEECCH-HHHHHHCSEEEECCCCCGGGTTS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCC---CEEEEE-CCCcc-hhhH-hc--cccCCH-HHHHhcCCEEEEcCCCchhHHHH
Confidence 46899999 7999999999998654 355444 33221 1111 11 122222 1234678999999997642 221
Q ss_pred H----HHHHhCCCEEEEcCC
Q 023678 118 G----PIAVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~----~~~~~aG~~VIDlS~ 133 (279)
. -...+.|+.+||.|.
T Consensus 215 i~~~~l~~mk~ga~lIn~sr 234 (333)
T 1dxy_A 215 INEAAFNLMKPGAIVINTAR 234 (333)
T ss_dssp BCHHHHHHSCTTEEEEECSC
T ss_pred hCHHHHhhCCCCcEEEECCC
Confidence 1 133567999998875
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.17 Score=43.25 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=26.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 37 (241)
T 1dhr_A 6 EARRVLVYGGRGALGSRCVQAFRARNW---WVASI 37 (241)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC---EEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCC---EEEEE
Confidence 357899999999999999999998754 44444
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.051 Score=50.75 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=51.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecC----ccCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELT----EDSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d----~~~~~~~DvVf~a~g~ 111 (279)
...+|+|+|+ |.+|+.+++.+...+. ++..+ +++... ..... .+....+...+ .+.+.++|+||.|++.
T Consensus 167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga---~V~~~-d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 167 EPADVVVIGA-GTAGYNAARIANGMGA---TVTVL-DINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-ESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEE-eCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 3579999997 9999999999987643 55444 332110 00110 11111111111 1223578999999864
Q ss_pred ch-------hhhhHHHHHhCCCEEEEcCCC
Q 023678 112 SI-------SKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 112 ~~-------s~~~~~~~~~aG~~VIDlS~~ 134 (279)
.. .++.. +..+.|..+||.+.+
T Consensus 242 p~~~t~~li~~~~l-~~mk~g~~iV~va~~ 270 (377)
T 2vhw_A 242 PGAKAPKLVSNSLV-AHMKPGAVLVDIAID 270 (377)
T ss_dssp TTSCCCCCBCHHHH-TTSCTTCEEEEGGGG
T ss_pred CCCCCcceecHHHH-hcCCCCcEEEEEecC
Confidence 43 22222 234678899999843
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.40 E-value=0.19 Score=43.99 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=26.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 8 ~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 39 (270)
T 1yde_A 8 AGKVVVVTGGGRGIGAGIVRAFVNSGA---RVVIC 39 (270)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 346899999999999999999998854 44444
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.037 Score=48.50 Aligned_cols=31 Identities=16% Similarity=0.438 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 28 ~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~ 58 (260)
T 3un1_A 28 QKVVVITGASQGIGAGLVRAYRDRNY---RVVAT 58 (260)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 44444
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.13 Score=47.30 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=50.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
.++|+|+| .|.+|+.+.+.|..-+ .++.++ +++.. +... .. ....++ .+.+..+|+|++++|.+. ++.+
T Consensus 146 g~~vgIiG-~G~IG~~~A~~l~~~G---~~V~~~-d~~~~-~~~~-~~--~~~~~l-~ell~~aDvV~~~~p~t~~t~~l 215 (331)
T 1xdw_A 146 NCTVGVVG-LGRIGRVAAQIFHGMG---ATVIGE-DVFEI-KGIE-DY--CTQVSL-DEVLEKSDIITIHAPYIKENGAV 215 (331)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEE-CSSCC-CSCT-TT--CEECCH-HHHHHHCSEEEECCCCCTTTCCS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCC---CEEEEE-CCCcc-HHHH-hc--cccCCH-HHHHhhCCEEEEecCCchHHHHH
Confidence 46999999 7999999999998654 355444 33221 1111 11 122221 123467899999988642 2222
Q ss_pred H----HHHHhCCCEEEEcC
Q 023678 118 G----PIAVEKGSIVVDNS 132 (279)
Q Consensus 118 ~----~~~~~aG~~VIDlS 132 (279)
. -...+.|+.+||.|
T Consensus 216 i~~~~l~~mk~ga~lin~s 234 (331)
T 1xdw_A 216 VTRDFLKKMKDGAILVNCA 234 (331)
T ss_dssp BCHHHHHTSCTTEEEEECS
T ss_pred hCHHHHhhCCCCcEEEECC
Confidence 2 12246789999887
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.099 Score=48.52 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=51.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCCCCCcEEEecCCCch-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGSI-SKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~~-s~~ 116 (279)
.++|+||| .|.+|+.+.+.|...+ .++.+. +++.........+ .... ++ .+.+..+|+|+.++|.+. .+.
T Consensus 168 g~tvGIIG-~G~IG~~vA~~l~~~G---~~V~~~-d~~~~~~~~~~~g--~~~~~~l-~ell~~aDvV~l~~P~t~~t~~ 239 (347)
T 1mx3_A 168 GETLGIIG-LGRVGQAVALRAKAFG---FNVLFY-DPYLSDGVERALG--LQRVSTL-QDLLFHSDCVTLHCGLNEHNHH 239 (347)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTT---CEEEEE-CTTSCTTHHHHHT--CEECSSH-HHHHHHCSEEEECCCCCTTCTT
T ss_pred CCEEEEEe-ECHHHHHHHHHHHHCC---CEEEEE-CCCcchhhHhhcC--CeecCCH-HHHHhcCCEEEEcCCCCHHHHH
Confidence 47899999 7999999999998764 355444 3322111000001 1111 11 123457899999998652 333
Q ss_pred hH-HH---HHhCCCEEEEcCCC
Q 023678 117 FG-PI---AVEKGSIVVDNSSA 134 (279)
Q Consensus 117 ~~-~~---~~~aG~~VIDlS~~ 134 (279)
+. .. ..+.|+.+||.+..
T Consensus 240 li~~~~l~~mk~gailIN~arg 261 (347)
T 1mx3_A 240 LINDFTVKQMRQGAFLVNTARG 261 (347)
T ss_dssp SBSHHHHTTSCTTEEEEECSCT
T ss_pred HhHHHHHhcCCCCCEEEECCCC
Confidence 32 22 23578899987753
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.16 Score=44.49 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=25.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 12 ~k~vlITGas~GIG~~~a~~L~~~G~---~V~~~ 42 (311)
T 3o26_A 12 RRCAVVTGGNKGIGFEICKQLSSNGI---MVVLT 42 (311)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CcEEEEecCCchHHHHHHHHHHHCCC---EEEEE
Confidence 36799999999999999999998853 54444
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.11 Score=45.19 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=28.3
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|+..++.++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 1 M~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 37 (260)
T 1nff_A 1 MSGRLTGKVALVSGGARGMGASHVRAMVAEGA---KVVFG 37 (260)
T ss_dssp -CCTTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 34444567899999999999999999998854 44444
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.079 Score=45.29 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=26.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.++|.|.||+|.+|+++++.|.++++ +++++
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~ 41 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAGA---SVVVS 41 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC---EEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC---EEEEE
Confidence 357899999999999999999998753 45544
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.09 E-value=0.19 Score=43.50 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 36 (256)
T 2d1y_A 6 GKGVLVTGGARGIGRAIAQAFAREGA---LVALC 36 (256)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998854 45444
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=92.08 E-value=0.067 Score=48.95 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=52.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCCCCCcEEEecCCCch-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGSI-SKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~~-s~~ 116 (279)
.++|+||| .|.+|+.+.+.|...+ .++..+ ++.+....... ....... ++ .+.+.++|+|++|+|... .+.
T Consensus 146 g~~vgIIG-~G~IG~~~A~~l~~~G---~~V~~~-d~~~~~~~~~~-~~g~~~~~~l-~ell~~aDvVil~~p~~~~t~~ 218 (320)
T 1gdh_A 146 NKTLGIYG-FGSIGQALAKRAQGFD---MDIDYF-DTHRASSSDEA-SYQATFHDSL-DSLLSVSQFFSLNAPSTPETRY 218 (320)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTT---CEEEEE-CSSCCCHHHHH-HHTCEECSSH-HHHHHHCSEEEECCCCCTTTTT
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCC---CEEEEE-CCCCcChhhhh-hcCcEEcCCH-HHHHhhCCEEEEeccCchHHHh
Confidence 57999999 7999999999998653 455544 33022111100 0011221 11 123467899999999653 333
Q ss_pred hH-H---HHHhCCCEEEEcCC
Q 023678 117 FG-P---IAVEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~-~---~~~~aG~~VIDlS~ 133 (279)
+. . ...+.|+.+||.+.
T Consensus 219 ~i~~~~l~~mk~gailIn~ar 239 (320)
T 1gdh_A 219 FFNKATIKSLPQGAIVVNTAR 239 (320)
T ss_dssp CBSHHHHTTSCTTEEEEECSC
T ss_pred hcCHHHHhhCCCCcEEEECCC
Confidence 22 1 22467889998875
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.45 Score=41.95 Aligned_cols=33 Identities=9% Similarity=0.240 Sum_probs=26.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+..++.|.||+|.+|+++.+.|.++++ +++++.
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~ 40 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADGA---NVALVA 40 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTTC---EEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEE
Confidence 356899999999999999999998754 555543
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=91.98 E-value=0.25 Score=44.82 Aligned_cols=70 Identities=14% Similarity=0.271 Sum_probs=42.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-CCCceee---eCCceeEEeecCccCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGKQLS---FQDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s~G~~~~---~~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
++||+|+|| |.+|..+...|..+++ ..+++++.-.. ..|.... .....+... .|.+++.++|+|+.+.+.
T Consensus 14 ~~kV~ViGa-G~vG~~~a~~l~~~g~-~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t-~d~~~l~~aD~Vi~aag~ 87 (303)
T 2i6t_A 14 VNKITVVGG-GELGIACTLAISAKGI-ADRLVLLDLSEGTKGATMDLEIFNLPNVEIS-KDLSASAHSKVVIFTVNS 87 (303)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECCC-----CHHHHHHHTCTTEEEE-SCGGGGTTCSEEEECCCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEcCCcchHHHHHHHhhhcCCCeEEe-CCHHHHCCCCEEEEcCCC
Confidence 479999996 9999999988877653 33666653222 1122111 111133332 244668899999999854
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=0.2 Score=43.36 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=25.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 9 ~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~ 39 (260)
T 2ae2_A 9 GCTALVTGGSRGIGYGIVEELASLGA---SVYTC 39 (260)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 44444
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.83 E-value=0.29 Score=42.30 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=27.8
Q ss_pred ccCCCCCEEEEECcCcH--HHHHHHHHHHcCCCCceEEEEE
Q 023678 34 SYQESAPSVAVVGVTGA--VGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 34 ~~~~~~~kVaIiGATG~--VG~eLl~lL~~~~~p~~~l~~l 72 (279)
...++..+|.|.||+|. +|+++.+.|.++++ +++++
T Consensus 2 ~~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~---~V~~~ 39 (266)
T 3oig_A 2 NFSLEGRNIVVMGVANKRSIAWGIARSLHEAGA---RLIFT 39 (266)
T ss_dssp CSCCTTCEEEEECCCSTTSHHHHHHHHHHHTTC---EEEEE
T ss_pred ccccCCCEEEEEcCCCCCcHHHHHHHHHHHCCC---EEEEe
Confidence 33344678999999999 99999999998754 44444
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.82 E-value=0.13 Score=44.59 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=26.6
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++..+|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 37 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGA---KVALV 37 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEE
Confidence 3446899999999999999999998754 44444
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=91.80 E-value=0.1 Score=49.32 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=51.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCCCCCcEEEecCCCc-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSFDGVDIALFSAGGS-ISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~-~s~~ 116 (279)
.++|+||| .|.+|+.+.+.|...+ .++... +++........ ...... .++ .+.+..+|+|++++|.+ .++.
T Consensus 191 gktvGIIG-lG~IG~~vA~~l~a~G---~~V~~~-d~~~~~~~~~~-~~G~~~~~~l-~ell~~aDvV~l~~Plt~~t~~ 263 (393)
T 2nac_A 191 AMHVGTVA-AGRIGLAVLRRLAPFD---VHLHYT-DRHRLPESVEK-ELNLTWHATR-EDMYPVCDVVTLNCPLHPETEH 263 (393)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGT---CEEEEE-CSSCCCHHHHH-HHTCEECSSH-HHHGGGCSEEEECSCCCTTTTT
T ss_pred CCEEEEEe-ECHHHHHHHHHHHhCC---CEEEEE-cCCccchhhHh-hcCceecCCH-HHHHhcCCEEEEecCCchHHHH
Confidence 57999999 7999999999997653 454444 33221111110 001111 122 13356899999999954 2233
Q ss_pred hH-HH---HHhCCCEEEEcCC
Q 023678 117 FG-PI---AVEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~-~~---~~~aG~~VIDlS~ 133 (279)
+. .. ..+.|+.+||.+.
T Consensus 264 li~~~~l~~mk~gailIN~aR 284 (393)
T 2nac_A 264 MINDETLKLFKRGAYIVNTAR 284 (393)
T ss_dssp CBSHHHHTTSCTTEEEEECSC
T ss_pred HhhHHHHhhCCCCCEEEECCC
Confidence 33 12 2357889998874
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=91.78 E-value=0.18 Score=43.09 Aligned_cols=84 Identities=11% Similarity=0.084 Sum_probs=47.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecC-c-----cCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-E-----DSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d-~-----~~~~~~DvVf~a~g~~ 112 (279)
.+|.|+|+ |.+|+.+++.|.+++ . ++++ .++..- ..+. .+......+.. . ..+.++|.||.|++.+
T Consensus 10 ~~viI~G~-G~~G~~la~~L~~~g---~-v~vi-d~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (234)
T 2aef_A 10 RHVVICGW-SESTLECLRELRGSE---V-FVLA-EDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESD 82 (234)
T ss_dssp CEEEEESC-CHHHHHHHHHSTTSE---E-EEEE-SCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCH
T ss_pred CEEEEECC-ChHHHHHHHHHHhCC---e-EEEE-ECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCc
Confidence 68999996 999999999998763 2 4444 332110 1111 12222222322 1 2356899999999986
Q ss_pred hhhhhH-HHHHhCC--CEEEE
Q 023678 113 ISKKFG-PIAVEKG--SIVVD 130 (279)
Q Consensus 113 ~s~~~~-~~~~~aG--~~VID 130 (279)
.....+ ..+.+.| .++|-
T Consensus 83 ~~n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 83 SETIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp HHHHHHHHHHHHHCSSSEEEE
T ss_pred HHHHHHHHHHHHHCCCCeEEE
Confidence 443332 3333333 35553
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.094 Score=49.69 Aligned_cols=84 Identities=21% Similarity=0.200 Sum_probs=55.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-CCCceeeeCCceeEEeecCccCCCCCcEEEecCC------
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAG------ 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g------ 110 (279)
...||.|+||+|.+|..-++.+..-+.+...+..+..+. ..|.+ + +.+..+|++|-|.-
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~---------~-----~~i~~aDivIn~vlig~~aP 278 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP---------F-----DEIPQADIFINCIYLSKPIA 278 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC---------C-----THHHHSSEEEECCCCCSSCC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc---------h-----hhHhhCCEEEECcCcCCCCC
Confidence 467999999999999999999988765533443442111 11211 0 22447899999964
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
.-++++.+...-+.|..|||+|.|-
T Consensus 279 ~Lvt~e~v~~m~k~gsVIVDVA~D~ 303 (394)
T 2qrj_A 279 PFTNMEKLNNPNRRLRTVVDVSADT 303 (394)
T ss_dssp CSCCHHHHCCTTCCCCEEEETTCCT
T ss_pred cccCHHHHhcCcCCCeEEEEEecCC
Confidence 3355555543226799999999873
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=0.075 Score=48.92 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=51.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
.++|+||| .|.+|+.+.+.|...+ .++... +++........ .......++ .+.+..+|+|++++|.+. ++..
T Consensus 145 g~tvGIIG-~G~IG~~vA~~l~~~G---~~V~~~-d~~~~~~~~~~-~~g~~~~~l-~ell~~aDvV~l~~P~t~~t~~l 217 (330)
T 4e5n_A 145 NATVGFLG-MGAIGLAMADRLQGWG---ATLQYH-EAKALDTQTEQ-RLGLRQVAC-SELFASSDFILLALPLNADTLHL 217 (330)
T ss_dssp TCEEEEEC-CSHHHHHHHHHTTTSC---CEEEEE-CSSCCCHHHHH-HHTEEECCH-HHHHHHCSEEEECCCCSTTTTTC
T ss_pred CCEEEEEe-eCHHHHHHHHHHHHCC---CEEEEE-CCCCCcHhHHH-hcCceeCCH-HHHHhhCCEEEEcCCCCHHHHHH
Confidence 57999999 8999999999987653 354444 33321111100 001122222 123467899999998542 2222
Q ss_pred H-HHH---HhCCCEEEEcCCC
Q 023678 118 G-PIA---VEKGSIVVDNSSA 134 (279)
Q Consensus 118 ~-~~~---~~aG~~VIDlS~~ 134 (279)
. ... .+.|+.+||.+..
T Consensus 218 i~~~~l~~mk~gailIN~arg 238 (330)
T 4e5n_A 218 VNAELLALVRPGALLVNPCRG 238 (330)
T ss_dssp BCHHHHTTSCTTEEEEECSCG
T ss_pred hCHHHHhhCCCCcEEEECCCC
Confidence 2 122 3578999988753
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=0.18 Score=43.93 Aligned_cols=31 Identities=16% Similarity=0.398 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 11 ~k~~lVTGas~gIG~~ia~~l~~~G~---~V~~~ 41 (276)
T 1mxh_A 11 CPAAVITGGARRIGHSIAVRLHQQGF---RVVVH 41 (276)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45444
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.081 Score=49.55 Aligned_cols=87 Identities=21% Similarity=0.288 Sum_probs=50.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchh-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS-KKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s-~~~ 117 (279)
..+|+||| .|.+|+.+.+.|..-+ .++.+. +++.........+ ....++ .+.+..+|+|+.++|.+.. +..
T Consensus 176 gktvGIIG-lG~IG~~vA~~l~~fG---~~V~~~-d~~~~~~~~~~~g--~~~~~l-~ell~~aDvV~l~~Plt~~T~~l 247 (365)
T 4hy3_A 176 GSEIGIVG-FGDLGKALRRVLSGFR---ARIRVF-DPWLPRSMLEENG--VEPASL-EDVLTKSDFIFVVAAVTSENKRF 247 (365)
T ss_dssp SSEEEEEC-CSHHHHHHHHHHTTSC---CEEEEE-CSSSCHHHHHHTT--CEECCH-HHHHHSCSEEEECSCSSCC---C
T ss_pred CCEEEEec-CCcccHHHHHhhhhCC---CEEEEE-CCCCCHHHHhhcC--eeeCCH-HHHHhcCCEEEEcCcCCHHHHhh
Confidence 47999999 8999999999986543 355444 3332111011111 122222 1235689999999986522 222
Q ss_pred H--HH--HHhCCCEEEEcCC
Q 023678 118 G--PI--AVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~--~~--~~~aG~~VIDlS~ 133 (279)
. .. ..+.|+.+||.+.
T Consensus 248 i~~~~l~~mk~gailIN~aR 267 (365)
T 4hy3_A 248 LGAEAFSSMRRGAAFILLSR 267 (365)
T ss_dssp CCHHHHHTSCTTCEEEECSC
T ss_pred cCHHHHhcCCCCcEEEECcC
Confidence 2 12 2467999998763
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=91.64 E-value=0.075 Score=50.04 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=51.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeee-CCceeEEeecC--ccCCCCCcEEEecCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSF-QDKAYTVEELT--EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~-~~~~~~v~~~d--~~~~~~~DvVf~a~g~~ 112 (279)
+..+|+|+|+ |-+|+.+++.|...|. .++.++ ++.. .+ .+.. .+. .+.+.+ .+.+.++|+||.|+|..
T Consensus 166 ~g~~VlIiGa-G~iG~~~a~~l~~~G~--~~V~v~-~r~~-~ra~~la~~~g~--~~~~~~~l~~~l~~aDvVi~at~~~ 238 (404)
T 1gpj_A 166 HDKTVLVVGA-GEMGKTVAKSLVDRGV--RAVLVA-NRTY-ERAVELARDLGG--EAVRFDELVDHLARSDVVVSATAAP 238 (404)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCC--SEEEEE-CSSH-HHHHHHHHHHTC--EECCGGGHHHHHHTCSEEEECCSSS
T ss_pred cCCEEEEECh-HHHHHHHHHHHHHCCC--CEEEEE-eCCH-HHHHHHHHHcCC--ceecHHhHHHHhcCCCEEEEccCCC
Confidence 3579999996 9999999999987642 244444 3321 11 1110 011 121111 12235799999999876
Q ss_pred hhh---hhHHH-HHh----CCCEEEEcCCC
Q 023678 113 ISK---KFGPI-AVE----KGSIVVDNSSA 134 (279)
Q Consensus 113 ~s~---~~~~~-~~~----aG~~VIDlS~~ 134 (279)
... +.... +.+ .+..+||++.+
T Consensus 239 ~~~~~~~~l~~~~lk~r~~~~~v~vdia~P 268 (404)
T 1gpj_A 239 HPVIHVDDVREALRKRDRRSPILIIDIANP 268 (404)
T ss_dssp SCCBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred CceecHHHHHHHHHhccCCCCEEEEEccCC
Confidence 432 33443 332 45688998754
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=0.28 Score=49.66 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=56.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cc--e-e-------eeCCc-----------eeEEeecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK--Q-L-------SFQDK-----------AYTVEELT 95 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~--~-~-------~~~~~-----------~~~v~~~d 95 (279)
.+||+||| .|+.|..+...|.+.+|+ ++++ .++.. .+ . + ...+. .+... .+
T Consensus 314 i~kV~VIG-aG~MG~~iA~~la~aG~~---V~l~-D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d 387 (715)
T 1wdk_A 314 VKQAAVLG-AGIMGGGIAYQSASKGTP---ILMK-DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT-LS 387 (715)
T ss_dssp CSSEEEEC-CHHHHHHHHHHHHHTTCC---EEEE-CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE-SS
T ss_pred CCEEEEEC-CChhhHHHHHHHHhCCCE---EEEE-ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEE-CC
Confidence 45899999 699999999999988764 3333 32211 00 0 0 00010 12222 22
Q ss_pred ccCCCCCcEEEecCCCchh--hhhHHHH---HhCCCEEEEcCCCCC
Q 023678 96 EDSFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFR 136 (279)
Q Consensus 96 ~~~~~~~DvVf~a~g~~~s--~~~~~~~---~~aG~~VIDlS~~~R 136 (279)
.+.+.++|+||.|++.... +++..++ +..|+.++++++...
T Consensus 388 ~~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~ 433 (715)
T 1wdk_A 388 YGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTIS 433 (715)
T ss_dssp STTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC
T ss_pred HHHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCC
Confidence 3456789999999997653 3333333 346788899988763
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.27 Score=47.01 Aligned_cols=87 Identities=13% Similarity=0.209 Sum_probs=51.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-------CCc-eeeeCC-----------ceeEEeecCccCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------AGK-QLSFQD-----------KAYTVEELTEDSF 99 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-------~G~-~~~~~~-----------~~~~v~~~d~~~~ 99 (279)
..|.-||| .||+|.-+...|.+.|| ++..+. ++. .|. ++...+ ..+.+.. ++
T Consensus 11 ~~~~~ViG-lGyvGlp~A~~La~~G~---~V~~~D-~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~tt----d~ 81 (431)
T 3ojo_A 11 GSKLTVVG-LGYIGLPTSIMFAKHGV---DVLGVD-INQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVST----TP 81 (431)
T ss_dssp -CEEEEEC-CSTTHHHHHHHHHHTTC---EEEEEC-SCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEES----SC
T ss_pred CCccEEEe-eCHHHHHHHHHHHHCCC---EEEEEE-CCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeC----ch
Confidence 35889999 79999999999998866 444442 221 111 111111 0122221 24
Q ss_pred CCCcEEEecCCCchhh------------hhHHHH---HhCCCEEEEcCCC
Q 023678 100 DGVDIALFSAGGSISK------------KFGPIA---VEKGSIVVDNSSA 134 (279)
Q Consensus 100 ~~~DvVf~a~g~~~s~------------~~~~~~---~~aG~~VIDlS~~ 134 (279)
.++|++|.|+|+.... ...... ++.|..|||.|.-
T Consensus 82 ~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV 131 (431)
T 3ojo_A 82 EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTI 131 (431)
T ss_dssp CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCC
T ss_pred hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 5799999999986521 111222 3478899998864
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.39 Score=41.41 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=24.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+++.|.||+|.+|+++.+.|.++++ +++++
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 32 (258)
T 3a28_C 3 KVAMVTGGAQGIGRGISEKLAADGF---DIAVA 32 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC---EEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 5799999999999999999998754 44444
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=91.52 E-value=0.06 Score=50.15 Aligned_cols=87 Identities=10% Similarity=0.173 Sum_probs=51.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCCCCCcEEEecCCCch-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGSI-SKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~~-s~~ 116 (279)
.++|+||| .|.+|+.+.+.|..-+ .++..+ +++.........+ +... ++ .+.+..+|+|++++|.+. ++.
T Consensus 160 g~tvGIIG-lG~IG~~vA~~l~~~G---~~V~~~-d~~~~~~~~~~~g--~~~~~~l-~ell~~aDiV~l~~Plt~~t~~ 231 (352)
T 3gg9_A 160 GQTLGIFG-YGKIGQLVAGYGRAFG---MNVLVW-GRENSKERARADG--FAVAESK-DALFEQSDVLSVHLRLNDETRS 231 (352)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEE-CSHHHHHHHHHTT--CEECSSH-HHHHHHCSEEEECCCCSTTTTT
T ss_pred CCEEEEEe-ECHHHHHHHHHHHhCC---CEEEEE-CCCCCHHHHHhcC--ceEeCCH-HHHHhhCCEEEEeccCcHHHHH
Confidence 57999999 7999999999998754 355544 3321000000011 1121 11 123467899999998543 222
Q ss_pred hH-HHH---HhCCCEEEEcCC
Q 023678 117 FG-PIA---VEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~-~~~---~~aG~~VIDlS~ 133 (279)
.. ... .+.|+.+||.+.
T Consensus 232 li~~~~l~~mk~gailIN~aR 252 (352)
T 3gg9_A 232 IITVADLTRMKPTALFVNTSR 252 (352)
T ss_dssp CBCHHHHTTSCTTCEEEECSC
T ss_pred hhCHHHHhhCCCCcEEEECCC
Confidence 22 122 467999998874
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.47 Score=40.52 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSD 61 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~ 61 (279)
..+|.|.||+|.+|+++.+.|.+
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~ 27 (245)
T 3e9n_A 5 KKIAVVTGATGGMGIEIVKDLSR 27 (245)
T ss_dssp -CEEEEESTTSHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCHHHHHHHHHHhC
Confidence 46899999999999999999976
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=91.43 E-value=0.11 Score=46.38 Aligned_cols=87 Identities=15% Similarity=0.260 Sum_probs=50.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee--CC-------ceeEEeecCccCCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QD-------KAYTVEELTEDSFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~--~~-------~~~~v~~~d~~~~~~~DvVf~a 108 (279)
..+|.|+|| |-+|+.+.+.|.+.+ ++..+ +|+.. .+.+.. .. ....+.++ .+.+.++|+++.|
T Consensus 128 ~k~vlV~Ga-GgiG~aia~~L~~~G----~V~v~-~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~-~~~~~~~DilVn~ 200 (287)
T 1nvt_A 128 DKNIVIYGA-GGAARAVAFELAKDN----NIIIA-NRTVEKAEALAKEIAEKLNKKFGEEVKFSGL-DVDLDGVDIIINA 200 (287)
T ss_dssp SCEEEEECC-SHHHHHHHHHHTSSS----EEEEE-CSSHHHHHHHHHHHHHHHTCCHHHHEEEECT-TCCCTTCCEEEEC
T ss_pred CCEEEEECc-hHHHHHHHHHHHHCC----CEEEE-ECCHHHHHHHHHHHhhhcccccceeEEEeeH-HHhhCCCCEEEEC
Confidence 468999997 599999999999873 55444 43311 111110 00 02233332 3446789999999
Q ss_pred CCCchhhh-----h-HHHHHhCCCEEEEcC
Q 023678 109 AGGSISKK-----F-GPIAVEKGSIVVDNS 132 (279)
Q Consensus 109 ~g~~~s~~-----~-~~~~~~aG~~VIDlS 132 (279)
+|...... + ....+..|..|+|++
T Consensus 201 ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~ 230 (287)
T 1nvt_A 201 TPIGMYPNIDVEPIVKAEKLREDMVVMDLI 230 (287)
T ss_dssp SCTTCTTCCSSCCSSCSTTCCSSSEEEECC
T ss_pred CCCCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence 98764311 1 112234566666665
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.17 Score=45.21 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=27.6
Q ss_pred hhhccCCCCCCCCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 12 HFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|....+|...+--..|... |+ ..+..+|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 7 ~~~~~~~~~~~~~~~m~~~--m~-~l~gk~vlVTGas~gIG~~la~~l~~~G~---~V~~~ 61 (301)
T 3tjr_A 7 HHMGTLEAQTQGPGSMDGF--LS-GFDGRAAVVTGGASGIGLATATEFARRGA---RLVLS 61 (301)
T ss_dssp -----------------CC--CC-CSTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred ccccchhhcccCCccchhH--Hh-ccCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 4456666666554444321 22 13356899999999999999999998853 44444
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.18 Score=43.57 Aligned_cols=30 Identities=20% Similarity=0.491 Sum_probs=25.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 23 k~vlITGas~gIG~~la~~l~~~G~---~V~~~ 52 (251)
T 3orf_A 23 KNILVLGGSGALGAEVVKFFKSKSW---NTISI 52 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 5799999999999999999998753 45444
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.17 Score=43.84 Aligned_cols=33 Identities=9% Similarity=0.048 Sum_probs=26.7
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++.++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 37 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGA---RLLLF 37 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 3456899999999999999999998854 45444
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=91.19 E-value=0.26 Score=43.22 Aligned_cols=31 Identities=3% Similarity=0.182 Sum_probs=25.3
Q ss_pred CCEEEEECcCcH--HHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGA--VGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~--VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|. +|+++.+.|.++++ +++++
T Consensus 26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~---~V~~~ 58 (280)
T 3nrc_A 26 GKKILITGLLSNKSIAYGIAKAMHREGA---ELAFT 58 (280)
T ss_dssp TCEEEECCCCSTTCHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHcCC---EEEEe
Confidence 468999999988 99999999998753 44444
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=91.13 E-value=0.11 Score=48.35 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=51.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEe-ecCccCCCCCcEEEecCCCch-hh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVE-ELTEDSFDGVDIALFSAGGSI-SK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~~-s~ 115 (279)
.++|+||| .|.+|+.+.+.|...++. ++.+. +++....... ..+ .... ++ .+.+..+|+|++|+|... ++
T Consensus 164 g~tvgIIG-~G~IG~~vA~~l~~~G~~--~V~~~-d~~~~~~~~~~~~g--~~~~~~l-~ell~~aDvV~l~~P~t~~t~ 236 (364)
T 2j6i_A 164 GKTIATIG-AGRIGYRVLERLVPFNPK--ELLYY-DYQALPKDAEEKVG--ARRVENI-EELVAQADIVTVNAPLHAGTK 236 (364)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGCCS--EEEEE-CSSCCCHHHHHHTT--EEECSSH-HHHHHTCSEEEECCCCSTTTT
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCc--EEEEE-CCCccchhHHHhcC--cEecCCH-HHHHhcCCEEEECCCCChHHH
Confidence 57999999 799999999999765421 24444 3322111110 011 1111 11 123468999999998752 22
Q ss_pred hhH-H---HHHhCCCEEEEcCC
Q 023678 116 KFG-P---IAVEKGSIVVDNSS 133 (279)
Q Consensus 116 ~~~-~---~~~~aG~~VIDlS~ 133 (279)
... . ...+.|+.+||.+.
T Consensus 237 ~li~~~~l~~mk~ga~lIn~ar 258 (364)
T 2j6i_A 237 GLINKELLSKFKKGAWLVNTAR 258 (364)
T ss_dssp TCBCHHHHTTSCTTEEEEECSC
T ss_pred HHhCHHHHhhCCCCCEEEECCC
Confidence 222 1 22457889998774
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=91.12 E-value=0.12 Score=47.79 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=52.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee-eCCceeEEeecCc----cCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS-FQDKAYTVEELTE----DSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~-~~~~~~~v~~~d~----~~~~~~DvVf~a~g~~ 112 (279)
..+|.|+|| |-+|+.+++.+...+. ++..+ +++... ..+. .....+.+...+. +.+.++|+||.|++..
T Consensus 167 ~~~VlViGa-GgvG~~aa~~a~~~Ga---~V~v~-dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~ 241 (361)
T 1pjc_A 167 PGKVVILGG-GVVGTEAAKMAVGLGA---QVQIF-DINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVP 241 (361)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-ESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---EEEEE-eCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence 368999998 9999999999988743 55444 332110 0111 0111121211111 2235799999999764
Q ss_pred h-------hhhhHHHHHhCCCEEEEcCCC
Q 023678 113 I-------SKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 113 ~-------s~~~~~~~~~aG~~VIDlS~~ 134 (279)
. ..+. -+..+.|..|+|++.+
T Consensus 242 ~~~~~~li~~~~-~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 242 GRRAPILVPASL-VEQMRTGSVIVDVAVD 269 (361)
T ss_dssp TSSCCCCBCHHH-HTTSCTTCEEEETTCT
T ss_pred CCCCCeecCHHH-HhhCCCCCEEEEEecC
Confidence 3 2222 2334678899999764
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.10 E-value=0.7 Score=42.31 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=26.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+...|.|.||+|.+|+++.+.|.++++ +++++.
T Consensus 44 ~gk~vlVTGas~GIG~aia~~La~~Ga---~Vvl~~ 76 (346)
T 3kvo_A 44 AGCTVFITGASRGIGKAIALKAAKDGA---NIVIAA 76 (346)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCCC---EEEEEE
Confidence 356899999999999999999998753 555553
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=90.91 E-value=0.25 Score=42.31 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G~---~V~~~ 39 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREGA---AVVVA 39 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 56899999999999999999998753 45444
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.32 Score=45.12 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=58.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee---------------cCCCCceeee--------CCceeEEeecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS---------------KRSAGKQLSF--------QDKAYTVEELT 95 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s---------------~~s~G~~~~~--------~~~~~~v~~~d 95 (279)
..||.|+|| |-+|.++++.|...|. -++.++.. .+..|+.-.. ....+.+...+
T Consensus 34 ~~~VlIvGa-GGlGs~va~~La~aGV--g~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~ 110 (340)
T 3rui_A 34 NTKVLLLGA-GTLGCYVSRALIAWGV--RKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK 110 (340)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEe
Confidence 369999995 8899999999998754 34444421 1112321110 01122232111
Q ss_pred -----------------------ccCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcCCCCCCC
Q 023678 96 -----------------------EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 96 -----------------------~~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS~~~R~~ 138 (279)
.+.+.++|+||.|++...++.+..++ .+.|..+|+. .++++
T Consensus 111 ~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~~~~plI~a--a~G~~ 175 (340)
T 3rui_A 111 LSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINA--ALGFD 175 (340)
T ss_dssp CCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHHTTCEEEEE--EECSS
T ss_pred ccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHHcCCcEEEe--eecce
Confidence 11235789999999998887766544 6789999974 36654
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.19 Score=42.83 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=26.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+..+|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G~---~V~~~ 41 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASGA---RLILI 41 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 356899999999999999999998754 45555
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=90.72 E-value=0.084 Score=47.55 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=48.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee------CCceeEEeecC-c-cCCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF------QDKAYTVEELT-E-DSFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~------~~~~~~v~~~d-~-~~~~~~DvVf~a~ 109 (279)
..++.|+|| |-+|+.++..|.+.+. -++..+ +|+.. .+.+.. ....+...+++ . +.+.++|+|+.|+
T Consensus 127 ~k~vlVlGa-GG~g~aia~~L~~~G~--~~v~i~-~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT 202 (283)
T 3jyo_A 127 LDSVVQVGA-GGVGNAVAYALVTHGV--QKLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT 202 (283)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTC--SEEEEE-CSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEE-ECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence 468999997 8899999999988743 244443 44321 111110 01122222222 1 1234689999999
Q ss_pred CCchhhh----hHHHHHhCCCEEEEcC
Q 023678 110 GGSISKK----FGPIAVEKGSIVVDNS 132 (279)
Q Consensus 110 g~~~s~~----~~~~~~~aG~~VIDlS 132 (279)
+.+.... +....+..+..|+|+-
T Consensus 203 p~Gm~~~~~~pi~~~~l~~~~~v~Dlv 229 (283)
T 3jyo_A 203 PMGMPAHPGTAFDVSCLTKDHWVGDVV 229 (283)
T ss_dssp STTSTTSCSCSSCGGGCCTTCEEEECC
T ss_pred CCCCCCCCCCCCCHHHhCCCCEEEEec
Confidence 8664321 1122234555666653
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=90.72 E-value=0.5 Score=43.63 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=55.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe---------------ecCCCCceeee----------CCceeEEee
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA---------------SKRSAGKQLSF----------QDKAYTVEE 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~---------------s~~s~G~~~~~----------~~~~~~v~~ 93 (279)
..+|.|+|+ |-+|.++++.|...|.. ++.++- .....|++-.. +...+....
T Consensus 36 ~~~VlivG~-GGlG~~ia~~La~~Gvg--~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 112 (346)
T 1y8q_A 36 ASRVLLVGL-KGLGAEIAKNLILAGVK--GLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT 112 (346)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCS--EEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC--EEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEe
Confidence 468999995 77899999999887543 444441 11223432111 112222222
Q ss_pred --cC---ccCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEc
Q 023678 94 --LT---EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDN 131 (279)
Q Consensus 94 --~d---~~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDl 131 (279)
++ .+.+.++|+|+.|+....++.+...+ .+.|..+|+.
T Consensus 113 ~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~ 156 (346)
T 1y8q_A 113 EDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTG 156 (346)
T ss_dssp SCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 11 12247899999999988777766554 5688888864
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=0.15 Score=43.90 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=26.7
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~ 37 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEKA---KVVVN 37 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEE
Confidence 3457899999999999999999998753 45444
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=90.54 E-value=1.1 Score=38.81 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=25.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~ 51 (253)
T 2nm0_A 21 SRSVLVTGGNRGIGLAIARAFADAGD---KVAIT 51 (253)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 35799999999999999999998753 44444
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.49 E-value=0.57 Score=41.19 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=25.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
...+.|.||+|.+|+++.+.|.++++ +++++
T Consensus 29 ~k~~lVTGas~GIG~aia~~la~~G~---~V~~~ 59 (280)
T 4da9_A 29 RPVAIVTGGRRGIGLGIARALAASGF---DIAIT 59 (280)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC---eEEEE
Confidence 46799999999999999999998753 55444
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=90.48 E-value=0.23 Score=43.53 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=23.9
Q ss_pred ecccCCCCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 32 RMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 32 ~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.|....+..+|.|.||+|.+|+++.+.|.++|+
T Consensus 9 ~m~~~~~~k~vlVTGas~gIG~aia~~l~~~G~ 41 (266)
T 3p19_A 9 QMGRGSMKKLVVITGASSGIGEAIARRFSEEGH 41 (266)
T ss_dssp ------CCCEEEEESTTSHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 344444456899999999999999999998864
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=90.43 E-value=0.15 Score=44.59 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=25.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 30 ~k~vlVTGas~GIG~aia~~l~~~G~---~Vi~~ 60 (281)
T 3ppi_A 30 GASAIVSGGAGGLGEATVRRLHADGL---GVVIA 60 (281)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 45799999999999999999998854 44444
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=90.38 E-value=0.087 Score=49.69 Aligned_cols=83 Identities=16% Similarity=0.293 Sum_probs=49.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeCCceeEEeecCccCCCCCcEEEecCCCchh---
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS--- 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s--- 114 (279)
.++|+||| .|.+|+.+.+.|..-| .++......+. .+ .+ ....++ .+.+..+|+|++++|.+..
T Consensus 119 gktvGIIG-lG~IG~~vA~~l~a~G---~~V~~~d~~~~~~~-----~~--~~~~sl-~ell~~aDiV~l~~Plt~~g~~ 186 (381)
T 3oet_A 119 DRTIGIVG-VGNVGSRLQTRLEALG---IRTLLCDPPRAARG-----DE--GDFRTL-DELVQEADVLTFHTPLYKDGPY 186 (381)
T ss_dssp GCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECHHHHHTT-----CC--SCBCCH-HHHHHHCSEEEECCCCCCSSTT
T ss_pred CCEEEEEe-ECHHHHHHHHHHHHCC---CEEEEECCChHHhc-----cC--cccCCH-HHHHhhCCEEEEcCcCCccccc
Confidence 46999999 8999999999998754 35544421110 00 00 011111 1234679999999985532
Q ss_pred --hhhH--H--HHHhCCCEEEEcCC
Q 023678 115 --KKFG--P--IAVEKGSIVVDNSS 133 (279)
Q Consensus 115 --~~~~--~--~~~~aG~~VIDlS~ 133 (279)
+... . ...+.|+.+||.|-
T Consensus 187 ~T~~li~~~~l~~mk~gailIN~aR 211 (381)
T 3oet_A 187 KTLHLADETLIRRLKPGAILINACR 211 (381)
T ss_dssp CCTTSBCHHHHHHSCTTEEEEECSC
T ss_pred cchhhcCHHHHhcCCCCcEEEECCC
Confidence 2111 1 22467999998764
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=90.37 E-value=0.19 Score=49.11 Aligned_cols=89 Identities=18% Similarity=0.185 Sum_probs=51.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcC------CCCceEEEEEeecCCCCceee-eCCcee---EEeecCccCCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDR------DFPYRSIKMLASKRSAGKQLS-FQDKAY---TVEELTEDSFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~------~~p~~~l~~l~s~~s~G~~~~-~~~~~~---~v~~~d~~~~~~~DvVf~a~ 109 (279)
+||+||| .|..|..+.+.|.+. ++ ++++...+.+...... ..+... ...+. .+.+.++|+||+|+
T Consensus 55 KkIgIIG-lGsMG~AmA~nLr~s~~~~g~G~---~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~-aEAa~~ADVVILaV 129 (525)
T 3fr7_A 55 KQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKIGLRKGSKSFDEARAAGFTEESGTLGDI-WETVSGSDLVLLLI 129 (525)
T ss_dssp SEEEEEC-CTTHHHHHHHHHHHHHHHTTCCC---EEEEEECTTCSCHHHHHHTTCCTTTTCEEEH-HHHHHHCSEEEECS
T ss_pred CEEEEEe-EhHHHHHHHHHHHhcccccCCCC---EEEEEeCCchhhHHHHHHCCCEEecCCCCCH-HHHHhcCCEEEECC
Confidence 6999999 799999999999776 54 4433222211111111 111110 01121 12345789999999
Q ss_pred CCchhhhhHHHH---HhCCCEEEEcCC
Q 023678 110 GGSISKKFGPIA---VEKGSIVVDNSS 133 (279)
Q Consensus 110 g~~~s~~~~~~~---~~aG~~VIDlS~ 133 (279)
+.....+..... ++.|+.|+..++
T Consensus 130 P~~~~~eVl~eI~p~LK~GaILs~AaG 156 (525)
T 3fr7_A 130 SDAAQADNYEKIFSHMKPNSILGLSHG 156 (525)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEESSS
T ss_pred ChHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 987665555443 357888665554
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=90.22 E-value=0.17 Score=46.41 Aligned_cols=90 Identities=10% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCc--eeee-----CCceeEEeecCc-c----CCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGK--QLSF-----QDKAYTVEELTE-D----SFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~--~~~~-----~~~~~~v~~~d~-~----~~~~~Dv 104 (279)
..++.|+|| |-+|+.++..|.+.+. -++.++ +|+. ..+ .+.. .+..+.+.+++. + .+.++|+
T Consensus 154 gk~~lVlGa-GG~g~aia~~L~~~Ga--~~V~i~-nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi 229 (315)
T 3tnl_A 154 GKKMTICGA-GGAATAICIQAALDGV--KEISIF-NRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI 229 (315)
T ss_dssp TSEEEEECC-SHHHHHHHHHHHHTTC--SEEEEE-ECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred CCEEEEECC-ChHHHHHHHHHHHCCC--CEEEEE-ECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence 468999996 8899999999988743 244433 4441 111 1110 111233444331 1 2347899
Q ss_pred EEecCCCchhhh-----h-HHHHHhCCCEEEEcC
Q 023678 105 ALFSAGGSISKK-----F-GPIAVEKGSIVVDNS 132 (279)
Q Consensus 105 Vf~a~g~~~s~~-----~-~~~~~~aG~~VIDlS 132 (279)
||.|++.+.... + ....+..+..|+|+-
T Consensus 230 IINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~Dlv 263 (315)
T 3tnl_A 230 FTNATGVGMKPFEGETLLPSADMLRPELIVSDVV 263 (315)
T ss_dssp EEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESC
T ss_pred EEECccCCCCCCCCCCCCCcHHHcCCCCEEEEec
Confidence 999998765421 1 122234556666654
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=90.04 E-value=0.18 Score=44.13 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..+|.|.||+|.+|+++.+.|.++++
T Consensus 27 ~k~vlVTGas~gIG~aia~~l~~~G~ 52 (260)
T 3gem_A 27 SAPILITGASQRVGLHCALRLLEHGH 52 (260)
T ss_dssp CCCEEESSTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 46799999999999999999998864
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.01 E-value=0.25 Score=42.91 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=27.2
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++.+++.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~ 37 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGT---AIALL 37 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 34457899999999999999999998754 44444
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=89.93 E-value=0.42 Score=45.37 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=54.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cc---eeeeCCceeEEeecCccCCCC-CcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK---QLSFQDKAYTVEELTEDSFDG-VDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~---~~~~~~~~~~v~~~d~~~~~~-~DvVf~a~g~~ 112 (279)
..||.|+|. |-.|..+.+.|.++|+ ++... ..+.. .. .+...+..+.......+.+.+ +|+|+.+.+-.
T Consensus 9 ~k~v~viG~-G~sG~s~A~~l~~~G~---~V~~~-D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~ 83 (451)
T 3lk7_A 9 NKKVLVLGL-ARSGEAAARLLAKLGA---IVTVN-DGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIP 83 (451)
T ss_dssp TCEEEEECC-TTTHHHHHHHHHHTTC---EEEEE-ESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSC
T ss_pred CCEEEEEee-CHHHHHHHHHHHhCCC---EEEEE-eCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCC
Confidence 579999996 8999999999998864 33333 22211 10 111122222222211223355 89999988776
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
.....+.++.+.|+.|+
T Consensus 84 ~~~p~~~~a~~~gi~v~ 100 (451)
T 3lk7_A 84 YNNPMVKKALEKQIPVL 100 (451)
T ss_dssp TTSHHHHHHHHTTCCEE
T ss_pred CCChhHHHHHHCCCcEE
Confidence 67777888899999998
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=89.93 E-value=0.42 Score=43.36 Aligned_cols=87 Identities=11% Similarity=0.012 Sum_probs=51.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCcee-eeCCceeEEeecCccCC-CCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL-SFQDKAYTVEELTEDSF-DGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~-~~~~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s~~ 116 (279)
.-+|.|+|| |-+|...++++...+ .+++.+.. +.....+ ...+.+..+ .+.+.+ .++|+||.|+|...+.+
T Consensus 177 g~~VlV~Ga-G~vG~~a~qla~~~G---a~Vi~~~~-~~~~~~~~~~lGa~~v~--~~~~~~~~~~D~vid~~g~~~~~~ 249 (348)
T 3two_A 177 GTKVGVAGF-GGLGSMAVKYAVAMG---AEVSVFAR-NEHKKQDALSMGVKHFY--TDPKQCKEELDFIISTIPTHYDLK 249 (348)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHHTT---CEEEEECS-SSTTHHHHHHTTCSEEE--SSGGGCCSCEEEEEECCCSCCCHH
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC---CeEEEEeC-CHHHHHHHHhcCCCeec--CCHHHHhcCCCEEEECCCcHHHHH
Confidence 478999997 999999999887764 25555432 2211111 112223333 222223 37999999999874444
Q ss_pred hHHHHHhCCCEEEEcC
Q 023678 117 FGPIAVEKGSIVVDNS 132 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS 132 (279)
.+-++++.|-+++..+
T Consensus 250 ~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 250 DYLKLLTYNGDLALVG 265 (348)
T ss_dssp HHHTTEEEEEEEEECC
T ss_pred HHHHHHhcCCEEEEEC
Confidence 4445556666666654
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.86 E-value=0.37 Score=42.34 Aligned_cols=33 Identities=9% Similarity=0.181 Sum_probs=26.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+..++.|.||+|.+|+++.+.|.++++ +++++.
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~ 62 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGRAIAHGYARAGA---HVLAWG 62 (273)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEc
Confidence 356899999999999999999998754 555553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 279 | ||||
| d2gz1a1 | 154 | c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semiald | 6e-35 | |
| d1mb4a1 | 147 | c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semiald | 1e-34 | |
| d1mb4a2 | 222 | d.81.1.1 (A:133-354) Aspartate beta-semialdehyde d | 2e-32 | |
| d2hjsa1 | 144 | c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog | 2e-31 | |
| d1t4ba2 | 221 | d.81.1.1 (A:134-354) Aspartate beta-semialdehyde d | 8e-31 | |
| d1t4ba1 | 146 | c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semiald | 2e-29 | |
| d2gz1a2 | 202 | d.81.1.1 (A:128-329) Aspartate beta-semialdehyde d | 1e-25 | |
| d2hjsa2 | 190 | d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 | 4e-24 | |
| d2cvoa1 | 183 | c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde | 1e-18 | |
| d1nvmb1 | 157 | c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydroge | 4e-18 | |
| d1vkna1 | 176 | c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamy | 4e-17 | |
| d2g17a1 | 179 | c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamy | 3e-13 | |
| d1b7go2 | 162 | d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate de | 1e-08 | |
| d1cf2o2 | 165 | d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate de | 5e-07 | |
| d2czca1 | 162 | d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate de | 0.003 |
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Score = 121 bits (304), Expect = 6e-35
Identities = 72/157 (45%), Positives = 94/157 (59%), Gaps = 7/157 (4%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TGAVG + + +L + P I+ LAS RSAGK L F+D+ T+EE TE +F+G
Sbjct: 4 VAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEG 63
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
VDIALFSAG S S K+ P AV+ G +VVDN+S FR +VPLV+PEVN A+
Sbjct: 64 VDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHAL------DA 117
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198
+IA PN + +A LH R V ++
Sbjct: 118 HNGIIACPNAAWNSVQIAE-TLHERGLVRPTAELKFE 153
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Score = 120 bits (301), Expect = 1e-34
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 12/147 (8%)
Query: 42 VAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSF 99
V +VG G VG + + + RDF ++ + +F A + + +S
Sbjct: 3 VGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESL 62
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157
+D + GGS ++K P + G +D +S RM + + + VN + I
Sbjct: 63 KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQ---IL 119
Query: 158 VGMGKG-----ALIANPNCSTIICLMA 179
G+ G A P T+ ++A
Sbjct: 120 HGIHHGTKTFVGGAAEPLRRTLRIILA 146
|
| >d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Score = 116 bits (292), Expect = 2e-32
Identities = 36/135 (26%), Positives = 45/135 (33%), Gaps = 28/135 (20%)
Query: 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTR------------- 216
NC+ + LMA L+ R V M TYQAASGAGA M EL Q
Sbjct: 1 NCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANP 60
Query: 217 ------------EVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
E + F A +L +NG ++EE K E KI
Sbjct: 61 ASSILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKIL 120
Query: 265 VSFKMNFFVSPCSCN 279
+ P
Sbjct: 121 ---GLQDSPVPIDGT 132
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 111 bits (279), Expect = 2e-31
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TG+VG+ + +L +RDFP + +LAS SAG+++ F + + V ++ F
Sbjct: 5 VAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSS 64
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
V +A F+A +S+ A G V+D S A P V+ VN E ++
Sbjct: 65 VGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEP-SVAPPVMVSVNAERLASQA---- 119
Query: 162 KGALIANPNCSTIICLMAATPLH 184
L+++P + L H
Sbjct: 120 APFLLSSPAALNAVLLGELLIKH 142
|
| >d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 112 bits (281), Expect = 8e-31
Identities = 33/124 (26%), Positives = 43/124 (34%), Gaps = 25/124 (20%)
Query: 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVL---------- 219
NC+ + LM+ L V + V+TYQAASG GA M EL Q +
Sbjct: 1 NCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATP 60
Query: 220 ---------------EGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
F A +L L+NG + EE K ET KI
Sbjct: 61 SSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKIL 120
Query: 265 VSFK 268
+
Sbjct: 121 NTSS 124
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 106 bits (266), Expect = 2e-29
Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 42 VAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSF 99
V +G G VG + ++ +RDF ++ + SF T+++ + ++
Sbjct: 4 VGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEAL 63
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAM---- 153
+DI + GG + + P E G +D +S+ RM ++ +++ VN + +
Sbjct: 64 KALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGL 123
Query: 154 -SGIKVGMGKGALIANPNCSTI 174
+GI+ +G A P +
Sbjct: 124 NNGIRTFVGG---AAEPLRRML 142
|
| >d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Score = 98.7 bits (245), Expect = 1e-25
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGK-------- 222
CSTI ++A P+ ++ + R++VSTYQA SGAG A+ E + + REVL
Sbjct: 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHA 60
Query: 223 ---PPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNF 271
P AFN +N Y EEMKM KET+KI +
Sbjct: 61 EILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDDSIAV 112
|
| >d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 94.0 bits (233), Expect = 4e-24
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Query: 171 CSTIICL-MAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIF 229
C+ L PL ++ ++ + S G ++EL QT E+L +P ++F
Sbjct: 1 CAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLF 60
Query: 230 SQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVSPC 276
+Q AFNL + V G++ E ++ E + + V+
Sbjct: 61 DRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCI 107
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Score = 79.6 bits (195), Expect = 1e-18
Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 19/175 (10%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT------ 95
+AV+G +G G E + +L++ P IK++ + R AG+Q ++L
Sbjct: 8 IAVLGASGYTGAEIVRLLANH--PQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVK 65
Query: 96 EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155
+ F VD +++ ++ IV ++ N + A
Sbjct: 66 DADFSNVDAVFCCLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHSHRAPEL 125
Query: 156 IKVGMG-----------KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQA 199
+ + L+ANP A L+ + YQ
Sbjct: 126 QQEAVYGLTEVLRNEIRNARLVANPGLVKGASGQAVQNLNLMMGLPENTGLQYQP 180
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Length = 157 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Score = 77.0 bits (189), Expect = 4e-18
Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 21/157 (13%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKA-------YTVEEL 94
VA++G +G +G + + + R+ Y + + +A L+ + +
Sbjct: 7 VAIIG-SGNIGTDLMIKV-LRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLI 64
Query: 95 TEDSFDGVDIALF--SAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
F +D SA + + + G ++D + A P +P VN E
Sbjct: 65 KLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPA----AIGPYCVPVVNLEE 120
Query: 153 MSGIK-VGMGKGALIANPNCSTIICLMAATPLHRRAK 188
G V M + I+ A R A+
Sbjct: 121 HLGKLNVNM-----VTYAGNLDIMTSAALATAERMAQ 152
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Score = 74.9 bits (183), Expect = 4e-17
Identities = 30/190 (15%), Positives = 57/190 (30%), Gaps = 42/190 (22%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK-----AYTVEELTE 96
++G TG G E + +L + P I L+S+ AGK+L + E E
Sbjct: 4 AGIIGATGYTGLELVRLLKN--HPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE 61
Query: 97 DSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE----------------- 139
D+ + S + KG ++D + FR +
Sbjct: 62 KVSKNCDVLFTALPAGASYDL--VRELKGVKIIDLGADFRFDDPGVYREWYGKELSGYEN 119
Query: 140 -NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198
+PE++ E + + ++ NP A ++ +
Sbjct: 120 IKRVYGLPELHREEIKNAQ-------VVGNPGLVKGASGQAVQNMNIMFGL--------D 164
Query: 199 AASGAGAAAM 208
G +
Sbjct: 165 ETKGLEFTPI 174
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Score = 64.7 bits (156), Expect = 3e-13
Identities = 30/169 (17%), Positives = 48/169 (28%), Gaps = 21/169 (12%)
Query: 42 VAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGK--------QLSFQDKAYTVE 92
+VG +G G E +S ++ ++ + A AGK D
Sbjct: 4 TLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM 63
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
D VD+ + +S P ++ G +V D S AFR+ +
Sbjct: 64 SDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTHQ 123
Query: 153 MSGIKVGMGKGA------------LIANPNCSTIICLMAATPLHRRAKV 189
+ G LIA P A + R
Sbjct: 124 YPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAAQAVQCANIRFGF 172
|
| >d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 51.0 bits (122), Expect = 1e-08
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEEL 211
C+T L +++ +KV ++ + + A+ +
Sbjct: 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQKEVKKGPI 41
|
| >d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Score = 46.4 bits (110), Expect = 5e-07
Identities = 5/93 (5%), Positives = 18/93 (19%), Gaps = 31/93 (33%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS 230
C+T PLH + ++ + + +
Sbjct: 2 CNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPAQVSK---------------------- 39
Query: 231 QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
+ + + + + +
Sbjct: 40 -GPINAIIPN--------PPKLPSHHGPDVKTV 63
|
| >d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 35.6 bits (82), Expect = 0.003
Identities = 6/89 (6%), Positives = 18/89 (20%), Gaps = 28/89 (31%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS 230
C+T + + + A V+ A
Sbjct: 2 CNTTGLVRTLSAIREYADYVYAVMIRRAADPN-------------------------DTK 36
Query: 231 QQYAFNLFSHNAPVLENGYNEEEMKMVKE 259
+ + ++ +++ V
Sbjct: 37 RGPINAIKPTVE---VPSHHGPDVQTVIP 62
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 279 | |||
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 100.0 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 100.0 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 100.0 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 100.0 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 100.0 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 100.0 | |
| d1mb4a2 | 222 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 100.0 | |
| d2hjsa2 | 190 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 100.0 | |
| d1t4ba2 | 221 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 100.0 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 99.97 | |
| d2gz1a2 | 202 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 99.96 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 99.92 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.65 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.64 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.59 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.54 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.53 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.53 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.52 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.52 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.47 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.45 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.41 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.41 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.26 | |
| d1cf2o2 | 165 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.25 | |
| d1vkna2 | 163 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 99.18 | |
| d2cvoa2 | 165 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 99.09 | |
| d2g17a2 | 155 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 98.95 | |
| d1b7go2 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 98.89 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.8 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 98.56 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 98.5 | |
| d2czca1 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 98.43 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 98.24 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.12 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.99 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 97.99 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.94 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 97.94 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.93 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.91 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 97.87 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.79 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.73 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.7 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.69 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.65 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.61 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 97.55 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 97.54 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.49 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 97.43 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.39 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 97.28 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.24 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.21 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.19 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.14 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 97.08 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 97.08 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.08 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.07 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.07 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.06 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.05 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.93 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 96.93 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.9 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 96.83 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.81 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 96.81 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.77 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 96.74 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.7 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.69 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.64 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.63 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 96.63 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 96.59 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.5 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 96.5 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.47 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.46 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 96.44 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.34 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 96.32 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 96.27 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.24 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.24 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.23 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.22 | |
| d1obfo2 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.21 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 96.18 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.17 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 96.14 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 96.07 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 96.06 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 96.04 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 96.02 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 95.84 | |
| d2g82a2 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.8 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 95.79 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 95.72 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 95.68 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 95.67 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 95.66 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 95.65 | |
| d1u8fo2 | 164 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.58 | |
| d1k3ta2 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.56 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.53 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 95.51 | |
| d3cmco2 | 163 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.48 | |
| d1rm4a2 | 163 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.41 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.41 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 95.4 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 95.38 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 95.28 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 95.25 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 95.16 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 95.06 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 94.89 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.58 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 94.21 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 94.09 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 93.89 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 93.86 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 93.72 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 93.37 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 93.33 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 93.13 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.05 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 92.89 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.32 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 92.17 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.07 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 92.03 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 91.92 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.51 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.2 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 91.09 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 91.08 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 90.86 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.7 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.7 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 90.53 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 90.34 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 90.19 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 90.07 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.06 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 89.92 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 89.77 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.71 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 89.56 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 89.47 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 89.11 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 88.96 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 88.79 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 88.63 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 88.46 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.44 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 87.95 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 87.78 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 87.64 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.51 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 87.5 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 87.23 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 87.11 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 86.82 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 86.77 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 86.75 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 86.67 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 86.33 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 86.27 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 86.0 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 85.78 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 85.69 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 85.61 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 85.6 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 85.51 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 84.92 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 84.87 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 84.62 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 84.55 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 84.2 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 84.18 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 83.87 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 83.49 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 83.43 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 83.39 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 83.21 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 83.11 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 83.01 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 82.3 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 81.78 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 81.51 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 81.37 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 81.15 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 81.02 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 80.99 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 80.64 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 80.31 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 80.11 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 80.07 |
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=2.9e-40 Score=275.96 Aligned_cols=152 Identities=47% Similarity=0.723 Sum_probs=140.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~ 119 (279)
+||||+|||||||+||+|+|.+|+||..++..++|++++|+.+.+........+....++.++|++|+|++++.+.++++
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~~ 81 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYAP 81 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHHh
Confidence 69999999999999999999999999999999999999999998877666676666677889999999999999999999
Q ss_pred HHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEee
Q 023678 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (279)
Q Consensus 120 ~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q 198 (279)
++.++|++|||+|++||+++++||++||+|++++.. ..++||||||+|+++++ |+||+++++|+..+..|||
T Consensus 82 ~~~~~~~~VIDlSsdfR~~~~~~~~~pe~n~~~~~~------~~~iIAnPgC~tt~i~~-l~PL~~~~lik~~~~~~~~ 153 (154)
T d2gz1a1 82 YAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDA------HNGIIACPNAAWNSVQI-AETLHERGLVRPTAELKFE 153 (154)
T ss_dssp HHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGG------CCSEEECCCTHHHHHHH-HHHHHHTTCCSCCSSCCSC
T ss_pred hhccccceehhcChhhhccCCcccccchhhHHHhcC------cCceEECCCCHHHHHHH-HHHHHHhcCCCccceeeec
Confidence 999999999999999999999999999999999874 56799999999999877 7999999999988888877
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.8e-39 Score=268.66 Aligned_cols=142 Identities=30% Similarity=0.482 Sum_probs=131.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
+|||||+|||||||++|+|+|.+|+||.+++..++|++++|+.+.+.+.++.+.+++.+.+.++|++|+|+|++.+++++
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~ 81 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHA 81 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhhhc
Confidence 48999999999999999999998889999999999999999999988888888888777888999999999999999999
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhh
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHR 185 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~ 185 (279)
+++.++|++|||+|++||++++ ++++||+|++.++.++ +.++||||||||++++++|+|+|+
T Consensus 82 ~~~~~~g~~VID~Ss~fR~~~~-~~~vpevn~~~l~~~~----~~~iIANPgC~t~~~ll~L~~~h~ 143 (144)
T d2hjsa1 82 ERARAAGCSVIDLSGALEPSVA-PPVMVSVNAERLASQA----APFLLSSPAALNAVLLGELLIKHY 143 (144)
T ss_dssp HHHHHTTCEEEETTCTTTTTTS-CBCCHHHHGGGGGGSC----SSCEEECCCHHHHHHHHHHHHHHC
T ss_pred cccccCCceEEeechhhccccc-ccccccccHHHHHhcc----CCCEEccCcHHHHHHHHHhhhhcc
Confidence 9999999999999999999876 5689999999998654 678999999999999999999985
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.1e-38 Score=270.52 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=127.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCc----eeEEeecCccCC-CCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK----AYTVEELTEDSF-DGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~----~~~v~~~d~~~~-~~~DvVf~a~g~~~ 113 (279)
|+||||+|||||||++|+|+|.+| |.+++..++|++++|+++..... ...+...+.+.+ .++|+||+|+++++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H--P~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~ 78 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH--PEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA 78 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC--TTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC--CCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHH
Confidence 689999999999999999999988 99999999999999998764221 222333333322 47999999999999
Q ss_pred hhhhHHHHHhCCCEEEEcCCCCCCCCC------------------CceeeccCCHHhhhccccCCCCCcEEECCCChHHH
Q 023678 114 SKKFGPIAVEKGSIVVDNSSAFRMVEN------------------VPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTII 175 (279)
Q Consensus 114 s~~~~~~~~~aG~~VIDlS~~~R~~~~------------------vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~ 175 (279)
+++++++ .+|++|||+|++|||++. ..|++||+|+++++ +.++|||||||+|+
T Consensus 79 s~~~~~~--~~~~~VIDlSadfRl~~~~~y~~~Y~~~h~~~~~~~~~YGlpE~~r~~i~-------~~~~IanPgC~~t~ 149 (176)
T d1vkna1 79 SYDLVRE--LKGVKIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHREEIK-------NAQVVGNPGLVKGA 149 (176)
T ss_dssp HHHHHTT--CCSCEEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHHHHT-------TCSEEECCCTTTTT
T ss_pred HHHHHHh--hccceEEecCccccccchhhHHHhhccccccccccceeecCcHHhHHHHh-------cCCEEEccCcHHHH
Confidence 9999876 479999999999999763 34779999999997 67899999999999
Q ss_pred HHHhhhchhhhcCccEEEEEEeecccccChhh
Q 023678 176 CLMAATPLHRRAKVTRMVVSTYQAASGAGAAA 207 (279)
Q Consensus 176 l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~ 207 (279)
++++|+||++.++| ++.||+|+++
T Consensus 150 ~~laL~PL~~~~gi--------~~~~g~~~~p 173 (176)
T d1vkna1 150 SGQAVQNMNIMFGL--------DETKGLEFTP 173 (176)
T ss_dssp HHHHHHHHHHHTTC--------CTTTTCCCCC
T ss_pred HHHHHhhHHHhcCC--------ccccccccCC
Confidence 99999999998886 5889999876
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.2e-34 Score=243.33 Aligned_cols=143 Identities=23% Similarity=0.320 Sum_probs=118.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec---CCCCceeeeCC------ceeEEeecC--ccCCCCCcEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---RSAGKQLSFQD------KAYTVEELT--EDSFDGVDIALF 107 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~---~s~G~~~~~~~------~~~~v~~~d--~~~~~~~DvVf~ 107 (279)
|+||||+|||||+|+||+|+|.+| |.+++..+.++ +++|+.+...+ .+..+...+ .....++|++|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H--P~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~ 78 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH--PHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFL 78 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC--TTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhC--CCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeec
Confidence 689999999999999999999998 99999877543 46788765311 223333322 223568999999
Q ss_pred cCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCC-------------------CceeeccCCHHhhhccccCCCCCcEEEC
Q 023678 108 SAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN-------------------VPLVIPEVNPEAMSGIKVGMGKGALIAN 168 (279)
Q Consensus 108 a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~-------------------vplvvPevN~~~i~~~~~~~~~~~iVan 168 (279)
|+|++.+.++++++.++|++|||+|++||+++. +.|++||+|+++++ +.++|||
T Consensus 79 alp~~~s~~~~~~~~~~~~~vIDlSadfRl~~~~~~~~~y~~~~~~~~~~~~~vYglpE~~r~~i~-------~~~~IAn 151 (179)
T d2g17a1 79 ATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTHQYPELLEQAVYGLAEWNVDKLN-------TANLIAV 151 (179)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHHCSCCSCHHHHHHCEECCGGGCHHHHT-------TCSEEEC
T ss_pred cccchhHHHHhhhhhhcCceeecccccccccccccccccccccccccccccccccCchhhhHHHHh-------cCCEEEc
Confidence 999999999999999999999999999999753 24899999999998 6789999
Q ss_pred CCChHHHHHHhhh-chhhhcCcc
Q 023678 169 PNCSTIICLMAAT-PLHRRAKVT 190 (279)
Q Consensus 169 PgC~tt~l~laL~-PL~~~~~i~ 190 (279)
||||+|+++|+|+ ||.+.+.|+
T Consensus 152 PGCyaTa~~laL~~pl~~~gli~ 174 (179)
T d2g17a1 152 PGLLKGAAAQAVQCANIRFGFAE 174 (179)
T ss_dssp CCTTTTTHHHHHHHHHHHHTCCT
T ss_pred CCchHHHHHHHHHhHHHHcCCCC
Confidence 9999999999996 777776665
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=4.2e-35 Score=243.25 Aligned_cols=139 Identities=23% Similarity=0.329 Sum_probs=115.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHc-CCCCceEEEEEeecCCCCceeeeCCceeEEee-cCccCCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~-~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~-~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
|||||+|||||||++|+++|.+ ++||..++..++|+++.|+.+.+......+.+ .+.+.+.++|+||+|+|+++|+++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~~ 80 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKV 80 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHHH
Confidence 6899999999999999997654 45899999999999999987776554444433 334457899999999999999999
Q ss_pred HHHHHhCCCE--EEEcCCCCCCCCCCceeeccCCHHhhhc-cccCCCCCcE--EECCCChHHHHHHh
Q 023678 118 GPIAVEKGSI--VVDNSSAFRMVENVPLVIPEVNPEAMSG-IKVGMGKGAL--IANPNCSTIICLMA 179 (279)
Q Consensus 118 ~~~~~~aG~~--VIDlS~~~R~~~~vplvvPevN~~~i~~-~~~~~~~~~i--VanPgC~tt~l~la 179 (279)
++++.++|++ |||+|++|||++++||++||||+++|+. +..+ ++..+ +++|||+|.++++|
T Consensus 81 ~~~l~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~-~k~~~~~~~~p~~~~~~~~~a 146 (147)
T d1mb4a1 81 YPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHG-TKTFVGGAAEPLRRTLRIILA 146 (147)
T ss_dssp HHHHHHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTT-CCEEEECTHHHHHHHHHHHHH
T ss_pred hHHHHHcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcC-CcceeeeccCcCHhHhHHHhc
Confidence 9999999974 9999999999999999999999999885 2222 23444 69999999999886
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=100.00 E-value=5.6e-35 Score=250.14 Aligned_cols=155 Identities=21% Similarity=0.256 Sum_probs=121.1
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCc-----ee-EEeecCccCCCCCcEEEecC
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK-----AY-TVEELTEDSFDGVDIALFSA 109 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~-----~~-~v~~~d~~~~~~~DvVf~a~ 109 (279)
+++++||||+|||||+|+||+|+|.+| |.+++..++|++++|+++..... +. .....+...+.++|+||+|+
T Consensus 2 s~~kikVaIlGATGyvG~elirLL~~H--P~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~al 79 (183)
T d2cvoa1 2 SGEEVRIAVLGASGYTGAEIVRLLANH--PQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCL 79 (183)
T ss_dssp CSSCEEEEEESCSSHHHHHHHHHHTTC--SSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECC
T ss_pred CCCccEEEEECcccHHHHHHHHHHHhC--CCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeecc
Confidence 356799999999999999999999988 99999999999999998764221 11 11111233457899999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcCCCCCCCCC-------------------CceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMVEN-------------------VPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~-------------------vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
|++.++++++.+.+.| ++||++++||+.+. ..|++||+|+++++ +.++|||||
T Consensus 80 p~~~s~~~~~~l~~~~-~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vyglpE~~r~~i~-------~a~~IANPg 151 (183)
T d2cvoa1 80 PHGTTQEIIKGLPQEL-KIVDLSADFRLRDINEYAEWYGHSHRAPELQQEAVYGLTEVLRNEIR-------NARLVANPG 151 (183)
T ss_dssp SSSHHHHHHHTSCSSC-EEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHHHHHHH-------HCSEEECCC
T ss_pred ccchHHHHHHHHHhcC-cccccchhhhccccchheeeccccccchhhhccccccCchHHHHHHh-------hCCEeeCCC
Confidence 9999999998876664 66677777776532 35899999999998 578999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecc
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAA 200 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~v 200 (279)
||+|+++++|+||+..+++.....-+||++
T Consensus 152 C~~t~~~laL~PL~~~~gli~~~~i~~~~~ 181 (183)
T d2cvoa1 152 LVKGASGQAVQNLNLMMGLPENTGLQYQPL 181 (183)
T ss_dssp TTTTTHHHHHHHHHHHHTSCTTTTCCCCCC
T ss_pred cHHHHHHHhhhhHHHhcCCCcccceeeecc
Confidence 999999999999976666543333345543
|
| >d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=5.9e-34 Score=250.60 Aligned_cols=108 Identities=32% Similarity=0.327 Sum_probs=98.4
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHH-------------------------hcCCCC
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREV-------------------------LEGKPP 224 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l-------------------------~~g~~~ 224 (279)
||+|++|+++|+|||+.++|++|+|+||||+||||+++++||.+|++.+ +++++.
T Consensus 1 NCsT~~l~~aL~pL~~~~~i~rv~vsTYQAvSGaG~~gv~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (222)
T d1mb4a2 1 NCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILDIDKKVAETMRSGSF 80 (222)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHSTTS
T ss_pred CcHHHHHHHHHHHHHHHhCeeEEEEeehhhhhhhcHHHHHHHHHHHHhhhccchhhhcCcchhhccchhhhhhhcccCCC
Confidence 8999999999999999999999999999999999999999999998743 446677
Q ss_pred CccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEeeeccc
Q 023678 225 TCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVSPCSC 278 (279)
Q Consensus 225 ~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~~~~~ 278 (279)
+..+|++|||||+|||||.|+++|||+||+|+++|+|||||.++-.+.|+ |||
T Consensus 81 ~~~~f~~~iAfNviP~i~~~~~~G~t~EE~K~~~EtrKIL~~~d~~i~Vs-aTC 133 (222)
T d1mb4a2 81 PTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPID-GTC 133 (222)
T ss_dssp SCTTTSSCCTBSEESCCSCBCSSSCBHHHHHHHHHHHHHHTCTTSCCCEE-CCC
T ss_pred ccccccccchhcccccccccccCCcccchHHHHHHHHHHhcCCCcccchh-HHH
Confidence 78899999999999999999999999999999999999999877455555 666
|
| >d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.2e-33 Score=243.24 Aligned_cols=105 Identities=23% Similarity=0.346 Sum_probs=101.7
Q ss_pred ChHH-HHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCC
Q 023678 171 CSTI-ICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 171 C~tt-~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
|+++ +|+++|+|||+.++|++|+|+|||++||+|++|++||++||+.+++|+++++++||+||+||+|||||.+.++||
T Consensus 1 Cs~~~qL~~aL~PL~~~~~i~rv~vsTyQavSGaG~~gv~eL~~Qt~~ll~~~~~~~~~fp~~iafNviP~ig~~~~~g~ 80 (190)
T d2hjsa2 1 CAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGH 80 (190)
T ss_dssp CHHHHHHHHHHHHHTTTCCEEEEEEEEEECGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTCCBSSSSCBCTTSC
T ss_pred ChhHHHHHHHHHHHHHhhCceEEEEEEEechhhcCHHHHHHHHHHHHHHhccccccccccchhhcccccccccccccccc
Confidence 8875 599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHHHHHHHhcCCCCccEEeeec
Q 023678 250 NEEEMKMVKETRKIWVSFKMNFFVSPC 276 (279)
Q Consensus 250 t~eE~k~~~E~~kil~~~~~~v~~~~~ 276 (279)
|+||+|+.+|+||||+++.+.|++| |
T Consensus 81 t~EE~K~~~Et~KIL~~~~l~vs~T-c 106 (190)
T d2hjsa2 81 SAIERRIFAEVQALLGERIGPLNVT-C 106 (190)
T ss_dssp BHHHHHHHHHHHHHTGGGBCCEEEE-E
T ss_pred chhhhhhhhhhhhhccCccccceee-e
Confidence 9999999999999999998999988 5
|
| >d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-33 Score=248.50 Aligned_cols=105 Identities=31% Similarity=0.304 Sum_probs=98.2
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhc-------------------------CCCC
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLE-------------------------GKPP 224 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~-------------------------g~~~ 224 (279)
||+|++|+++|+||+++++|++|+|+||||+||||++|++||.+|++.+++ ++++
T Consensus 1 NCst~~l~~aL~pL~~~~~i~rv~vsTYQAvSGaG~~~v~EL~~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (221)
T d1t4ba2 1 NCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGEL 80 (221)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTTCCHHHHHHHHHHHHHHTCS
T ss_pred CcHHHHHHHHHHHHHHHhCceEEEEEhhhhhhhhcHHHHHHHHHHHHhhhccccccccCchhhccchhhhhhhhcccccC
Confidence 899999999999999999999999999999999999999999999987653 4667
Q ss_pred CccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCC-ccEEee
Q 023678 225 TCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFK-MNFFVS 274 (279)
Q Consensus 225 ~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~-~~v~~~ 274 (279)
+.+.|++|||||+|||||.+.++|||+||+|+.+|+||||+.+. +.|+.|
T Consensus 81 ~~~~f~~~iAfNvIP~ig~~~e~G~t~EE~K~~~EtrKIL~~~~~i~VsaT 131 (221)
T d1t4ba2 81 PVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGL 131 (221)
T ss_dssp CCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSSCCCEEEE
T ss_pred CccccccccccccccCCccccccceechhHHHHHHHHhhhccccccceeeE
Confidence 77899999999999999999999999999999999999999876 887776
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.6e-32 Score=226.07 Aligned_cols=138 Identities=20% Similarity=0.331 Sum_probs=113.1
Q ss_pred CCEEEEECcCcHHHHHHHHH-HHcCCCCceEEEEEeecCCCCceeeeCCceeEEeec-CccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSV-LSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-TEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~l-L~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~-d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
|+||||+|||||||++|+++ |.+|+||..++++++|+++.|+.+.+......+.+. +.+++.++|+||+|+|++.+++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~ 80 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNE 80 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHH
Confidence 45899999999999999975 555689999999999999999888776555444443 3345789999999999999999
Q ss_pred hHHHHHhCCC--EEEEcCCCCCCCCCCceeeccCCHHhhhc-cccCCCC-CcEEECCCChHHHH
Q 023678 117 FGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSG-IKVGMGK-GALIANPNCSTIIC 176 (279)
Q Consensus 117 ~~~~~~~aG~--~VIDlS~~~R~~~~vplvvPevN~~~i~~-~~~~~~~-~~iVanPgC~tt~l 176 (279)
+++++.++|+ .|||+|++|||++++||++||||++.|+. ++.+.++ ..++++|+|.+..+
T Consensus 81 ~~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~~~~ig~~~~~~~~~~~~ 144 (146)
T d1t4ba1 81 IYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGAAEPLRRMLRQ 144 (146)
T ss_dssp HHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHHH
T ss_pred hhHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCCceEEeccCcHHHHHHHH
Confidence 9999999997 49999999999999999999999999874 2222111 45678898887654
|
| >d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.96 E-value=2e-30 Score=225.31 Aligned_cols=105 Identities=38% Similarity=0.528 Sum_probs=97.8
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCC-----------CCCcccccccccccccc
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGK-----------PPTCKIFSQQYAFNLFS 239 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~-----------~~~~~~f~~~iafN~iP 239 (279)
|+|++|+++|+||+++++|++|+|+||||+||||++|++||++|++.+++++ |.....|++|||||+||
T Consensus 1 Cst~~l~~aL~pL~~~~gi~~v~vsTyQAvSGaG~~gv~eL~~q~~~~l~~~~~~~~~~~~~~p~~~~~~~~~iafN~iP 80 (202)
T d2gz1a2 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALP 80 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSSCTTSSCCCCCTTCCBC
T ss_pred CcHHHHHHHHHHHHHhcCceEEEEEehHhHHhhhHHHHHHHHHHHHHHhcccccccccchhcccccccccceehhhhhhh
Confidence 9999999999999999999999999999999999999999999999998754 23345688999999999
Q ss_pred CCCCcccCCChHHHHhHHHHHHHhcCCCCccEEeeec
Q 023678 240 HNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVSPC 276 (279)
Q Consensus 240 ~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~~~ 276 (279)
|||.++++|||+||+|+.+|++|||+++++.|+.| |
T Consensus 81 ~i~~~~~~g~t~EE~k~~~E~~kIl~~~~~~vsat-c 116 (202)
T d2gz1a2 81 QIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSAT-C 116 (202)
T ss_dssp CCSCBCTTSSBHHHHHHHHHHHHHTTCTTSEEEEE-C
T ss_pred cccchhcccchhhhhHHhhhhcceecccccCcccc-e
Confidence 99999999999999999999999999988988887 5
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=99.92 E-value=3.1e-26 Score=191.31 Aligned_cols=137 Identities=19% Similarity=0.248 Sum_probs=106.5
Q ss_pred CCEEEEECcCcHHHHHH-HHHHHcCCCCceEEEEEeecCCCCceeeeC---CceeEEeec----CccCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEF-LSVLSDRDFPYRSIKMLASKRSAGKQLSFQ---DKAYTVEEL----TEDSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eL-l~lL~~~~~p~~~l~~l~s~~s~G~~~~~~---~~~~~v~~~----d~~~~~~~DvVf~a~g 110 (279)
++||||+| ||.+|+++ +++|.++ |.+++++++|++..++.+.+. +.......+ +..++.++|+||+|++
T Consensus 4 kirvaIIG-aG~ig~~~~~~~l~~~--~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATp 80 (157)
T d1nvmb1 4 KLKVAIIG-SGNIGTDLMIKVLRNA--KYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS 80 (157)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHC--SSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred CcEEEEEc-CcHHHHHHHHHHHhhC--CcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCC
Confidence 48999999 89999875 4666555 999999999988776544321 112221111 1234668999999999
Q ss_pred Cchh--hhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhh
Q 023678 111 GSIS--KKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRR 186 (279)
Q Consensus 111 ~~~s--~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~ 186 (279)
++.. ++++++++++|+.|||+|++. ++||+|||||++++...+ +.++|+||||++++++.+|+|+++.
T Consensus 81 ag~h~~~~~~~~aa~~G~~VID~s~a~----~vplvVPevN~~~~~~~~----n~nlitc~~~~tip~~~al~~~~~~ 150 (157)
T d1nvmb1 81 ASAHVQNEALLRQAKPGIRLIDLTPAA----IGPYCVPVVNLEEHLGKL----NVNMVTYAGNLDIMTSAALATAERM 150 (157)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECSTTC----SSCBCCHHHHTTTTTTCS----EEECCCTCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHhHHHHHHHHcCCEEEEccccc----cceEEccCcCHHHHhcCC----CCCeEecCchHHHHHHHHHHHHHHH
Confidence 8655 557788899999999999964 699999999999887532 5689999999999999999999873
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.65 E-value=2.8e-17 Score=139.10 Aligned_cols=145 Identities=13% Similarity=0.094 Sum_probs=104.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee--CC--------ceeEEee--c----C-ccCCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QD--------KAYTVEE--L----T-EDSFDG 101 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~--~~--------~~~~v~~--~----d-~~~~~~ 101 (279)
|+||||+| +|++||.++|.|.++ |.++++++.+.......... .+ ....+.+ + + ++.+.+
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~--~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~ 77 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQ--PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT 77 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTC--TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhC--CCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhc
Confidence 57999999 899999999999998 99999999765432111100 00 0000111 0 0 111247
Q ss_pred CcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHh--
Q 023678 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMA-- 179 (279)
Q Consensus 102 ~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~la-- 179 (279)
+|+|+.|+|...+++.++.++++|++|| ++++---+.....++.+||++++..- ...++|||..|+|.++++.
T Consensus 78 vDiViecTG~f~~~e~a~~hl~~G~KvI-i~~~~~~~~~~~t~V~GvN~~~~~~~----~~~~vVSnAscttn~lap~~~ 152 (178)
T d1b7go1 78 SDIVVDTTPNGVGAQYKPIYLQLQRNAI-FQGGEKAEVADISFSALCNYNEALGK----KYIRVVSESIVVPENIDAIRA 152 (178)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHTTCEEE-ECTTSCGGGSSCEECHHHHHHHHTTC----SEEEECCTTTHHHHHHHHHHH
T ss_pred CCEEEECCCCcCCHHHHHHHHHcCCEEE-EECCCCccccCCeEEeCcchHHhcCC----CCCEEEeCCcccccccHHHHH
Confidence 9999999999999999999999999988 45442211112468899999886320 0247999999999999999
Q ss_pred ----------hhchhhhcCccE
Q 023678 180 ----------ATPLHRRAKVTR 191 (279)
Q Consensus 180 ----------L~PL~~~~~i~~ 191 (279)
++.|.+.+||++
T Consensus 153 ~~~~~~~~~~~kv~~~~~gi~~ 174 (178)
T d1b7go1 153 SMKLMSAEDSMRITNESLGILK 174 (178)
T ss_dssp HTTCSCHHHHHHHHHHHTTCCC
T ss_pred HHHhhccccceeeeccccceee
Confidence 999999999975
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=99.64 E-value=1.5e-17 Score=139.89 Aligned_cols=141 Identities=16% Similarity=0.123 Sum_probs=102.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeee-CCceeEE---------ee--cC-----ccCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSF-QDKAYTV---------EE--LT-----EDSFD 100 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~-~~~~~~v---------~~--~d-----~~~~~ 100 (279)
|+||||.| .|.+||.++|.|.++ ++++++++........ .... .+-+... .+ +. .+.+.
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~--~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~ 77 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQ--DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD 77 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTS--SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhC--CCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc
Confidence 57999999 899999999999888 8999999976432111 0000 0000000 00 00 11235
Q ss_pred CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCC-ceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHh
Q 023678 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENV-PLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMA 179 (279)
Q Consensus 101 ~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~v-plvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~la 179 (279)
++|+|+.|+|...+++.++.++++|+++|-.+++- +++. ...+.+||+++... .+..+|+|++|+|+++++.
T Consensus 78 ~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~--~~~~~~~~v~GvN~~~~~~-----~~~~ivS~aSCTTNclapv 150 (171)
T d1cf2o1 78 EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGEK--HEDIGLSFNSLSNYEESYG-----KDYTRVVIVPENVDAVRAI 150 (171)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSC--HHHHSCEECHHHHHHHHTT-----CSEEEECTHHHHHHHHHHH
T ss_pred CCCEEEEccCCCCCHHHHHHHHHcCCCEEEECCCC--ccCCCceeEeccChhhhcC-----CCCcEEEECCchHHhHHHH
Confidence 89999999999999999999999999998655542 2222 24688999887653 1567899999999999999
Q ss_pred hhchhhhcCc
Q 023678 180 ATPLHRRAKV 189 (279)
Q Consensus 180 L~PL~~~~~i 189 (279)
+++|+++||+
T Consensus 151 ~kvl~~~fGi 160 (171)
T d1cf2o1 151 LEMEEDKYKS 160 (171)
T ss_dssp TTSCSCHHHH
T ss_pred HHHHHHHcCc
Confidence 9999999986
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.3e-14 Score=121.20 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=102.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-------------Cc---eee-------eCCceeEEee-c
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK---QLS-------FQDKAYTVEE-L 94 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-------------G~---~~~-------~~~~~~~v~~-~ 94 (279)
++||||.| .|.+||.++|.+.++ +.++++++...... |+ .+. ..++.+.+.. -
T Consensus 1 tikigING-FGRIGR~v~R~~~~~--~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~ 77 (166)
T d1gado1 1 TIKVGING-FGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAER 77 (166)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTC--SSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeEEEEEC-CcHHHHHHHHHHhhC--CCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCC
Confidence 37999999 899999999999998 99999999754321 11 111 1223344432 2
Q ss_pred CccC--CC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 95 TEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 95 d~~~--~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
++.+ |. ++|+|+.|+|...+++-+..++++|++-|=+|++- .++.+.+|++||.+.+. +..+|++++
T Consensus 78 ~p~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~--~d~~~~iV~GvN~~~~~-------~~~iiS~aS 148 (166)
T d1gado1 78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS--KDNTPMFVKGANFDKYA-------GQDIVSNAS 148 (166)
T ss_dssp SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC--SSSCCBCCTTTTGGGCC-------SCSEEECCC
T ss_pred ChHHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccc--cccCCEEEeCccccccC-------CCCEEEecc
Confidence 3333 53 79999999999999999999999999533377764 34468899999999886 457999999
Q ss_pred ChHHHHHHhhhchhh
Q 023678 171 CSTIICLMAATPLHR 185 (279)
Q Consensus 171 C~tt~l~laL~PL~~ 185 (279)
|+|+|+++.++.|..
T Consensus 149 CTTnclaPv~kvl~~ 163 (166)
T d1gado1 149 NETGYSNKVLDLIAH 163 (166)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 999999999888754
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=1.2e-15 Score=128.22 Aligned_cols=145 Identities=13% Similarity=0.088 Sum_probs=102.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee--eCCceeEE---------ee--cC-----ccCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--FQDKAYTV---------EE--LT-----EDSFD 100 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~--~~~~~~~v---------~~--~d-----~~~~~ 100 (279)
++||||.| .|.+||.++|.|.++ |.++++.+........... ..+.+... .+ +. .+.+.
T Consensus 2 ~irIaING-fGRIGR~v~Ral~~~--~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (172)
T d2czca2 2 KVKVGVNG-YGTIGKRVAYAVTKQ--DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE 78 (172)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTC--TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT
T ss_pred cEEEEEEC-CCHHHHHHHHHHHhC--CCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhc
Confidence 47999999 799999999999988 9999999976432211000 00001100 00 00 11135
Q ss_pred CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhh
Q 023678 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180 (279)
Q Consensus 101 ~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL 180 (279)
++|+|+.|+|...+++.++.++++|+++|-.|++-- +...+.++.+||+++... .+..+|++.+|+|+++++.+
T Consensus 79 ~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~-~~~~~t~v~GvNh~~~~~-----~~~~~v~scsctTn~lap~~ 152 (172)
T d2czca2 79 KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA-DVAEVSFVAQANYEAALG-----KNYVRVVVIPENIDAIRAMF 152 (172)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCG-GGSSEEECHHHHGGGGTT-----CSEEEECTHHHHHHHHHHHT
T ss_pred cCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCc-ccCCCeeEecccchhhcC-----CCceEEEecCchHHHHHHHH
Confidence 899999999999999999999999999887777521 222367999999887642 12334555566999999999
Q ss_pred hchhhhcCccEE
Q 023678 181 TPLHRRAKVTRM 192 (279)
Q Consensus 181 ~PL~~~~~i~~v 192 (279)
+.|.+.|+|+++
T Consensus 153 kvld~~~gIe~~ 164 (172)
T d2czca2 153 ELADKWDSIKKT 164 (172)
T ss_dssp TCSCHHHHHHHH
T ss_pred HHHhhhcCeeEe
Confidence 999999999864
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=99.53 E-value=4.8e-14 Score=118.21 Aligned_cols=140 Identities=17% Similarity=0.183 Sum_probs=104.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc----------------eee-------eCCceeEEee-cC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK----------------QLS-------FQDKAYTVEE-LT 95 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~----------------~~~-------~~~~~~~v~~-~d 95 (279)
+||||.| .|.+||.++|.+.++ |.++++++........ .+. ..++.+.+.. -+
T Consensus 2 ikIgING-fGRIGR~v~R~~l~~--~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~ 78 (171)
T d3cmco1 2 VKVGING-FGRIGRNVFRAALKN--PDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERD 78 (171)
T ss_dssp EEEEEES-CSHHHHHHHHHHTTC--TTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEEEC-CCHHHHHHHHHHhhC--CCcEEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCC
Confidence 6899999 899999999999988 9999999975432110 000 1223344432 23
Q ss_pred cc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 96 ED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 96 ~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
+. .|. ++|+|+.|+|...+++-+..++++|++-|=.|++. .++.+.+|.+||++.++. .+.++||+++|
T Consensus 79 p~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~--~d~~~t~V~GvN~~~~~~-----~~~~iIS~aSC 151 (171)
T d3cmco1 79 PENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPA--KNEDITIVMGVNQDKYDP-----KAHHVISNASN 151 (171)
T ss_dssp GGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC--BSCSEECCTTTSGGGCCT-----TTCCEEECCCT
T ss_pred HHHccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEeccc--ccccceeeeccchheecC-----CCCeEEEehhH
Confidence 33 353 79999999999999999999999999433367664 233368899999999863 14689999999
Q ss_pred hHHHHHHhhhchhhhcCccE
Q 023678 172 STIICLMAATPLHRRAKVTR 191 (279)
Q Consensus 172 ~tt~l~laL~PL~~~~~i~~ 191 (279)
+|+++++.++-|+ |+|++
T Consensus 152 Ttn~laPv~kvl~--fgi~~ 169 (171)
T d3cmco1 152 ETGYSHRVVDLAA--YIASK 169 (171)
T ss_dssp THHHHHHHHHHHH--HHHHT
T ss_pred HHhHHHHHHHHHH--hhHhh
Confidence 9999999999873 77753
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=99.53 E-value=2e-14 Score=120.40 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=104.2
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-CC-------------Cc---eee-------eCCceeEEee-cC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SA-------------GK---QLS-------FQDKAYTVEE-LT 95 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s~-------------G~---~~~-------~~~~~~~v~~-~d 95 (279)
||||.| .|.+||.++|.+.++ + ++++++.... +. |+ .+. ..++.+.+.. .+
T Consensus 2 kIgING-fGRIGR~~~R~~~~~--~-~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~ 77 (169)
T d1dssg1 2 KIGING-FGRIGRLVLRAALEM--G-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMK 77 (169)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHH--T-CCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEEC-CcHHHHHHHHHHHhC--C-CcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCC
Confidence 799999 999999999999887 3 4777776432 11 11 011 1233344432 23
Q ss_pred cc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 96 ED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 96 ~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
++ +|. ++|+|+.|+|...+++-+..++++|++-|=.|++. .|.+.+|.+||.+.+.. +.++||+++|
T Consensus 78 p~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~---~d~~~iV~GVN~~~~~~------~~~IIS~aSC 148 (169)
T d1dssg1 78 PENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPS---ADAPMFVCGVNLEKYSK------DMKVVSNASN 148 (169)
T ss_dssp GGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCC---SSSCBCCTTTSGGGCCT------TCCEEECCCT
T ss_pred hHHCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCc---cccceeeecccccccCC------CCCEEEChhH
Confidence 33 353 89999999999999999999999999544467764 24578899999999863 5789999999
Q ss_pred hHHHHHHhhhchhhhcCccE
Q 023678 172 STIICLMAATPLHRRAKVTR 191 (279)
Q Consensus 172 ~tt~l~laL~PL~~~~~i~~ 191 (279)
+|+++++.++.|++.|+|++
T Consensus 149 Ttn~laP~~k~l~~~fgIe~ 168 (169)
T d1dssg1 149 EFGYSQRVIDLIKHMQKVDS 168 (169)
T ss_dssp THHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999863
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.52 E-value=1.3e-13 Score=115.61 Aligned_cols=138 Identities=17% Similarity=0.245 Sum_probs=102.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-------------Cc---eee--------eCCceeEEe-ec
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK---QLS--------FQDKAYTVE-EL 94 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-------------G~---~~~--------~~~~~~~v~-~~ 94 (279)
|||||.| .|.+||.++|.+.++..+.++++++....+. |+ .+. ..++.+.+. .-
T Consensus 1 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~ 79 (172)
T d1rm4a1 1 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR 79 (172)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCC
Confidence 6899999 8999999999988775577999988654321 11 010 122334443 22
Q ss_pred CccC--CC--CCcEEEecCCCchhhhhHHHHHhCCCE-EEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC
Q 023678 95 TEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSI-VVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 95 d~~~--~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~-VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
++.+ |. ++|+|+.|+|...+++-+..++++|++ || +|++. .++.+.+|.+||.+.+.. +.++||+.
T Consensus 80 ~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkVi-iSAP~--k~~~~tiV~GVN~~~~~~------~~~iIS~a 150 (172)
T d1rm4a1 80 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL-ITAPG--KGDIPTYVVGVNEEGYTH------ADTIISNA 150 (172)
T ss_dssp CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEE-ESSCC--BSSCCBCCTTTTGGGCCT------TCSEEECC
T ss_pred ChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEE-eeccc--ccceeeEEeecchhhcCC------CCCEEEcc
Confidence 3433 53 799999999999999999999999994 55 67765 345688899999998863 57899999
Q ss_pred CChH---HHHHHhhhchhhhc
Q 023678 170 NCST---IICLMAATPLHRRA 187 (279)
Q Consensus 170 gC~t---t~l~laL~PL~~~~ 187 (279)
+|+| .++++.|+-|++.|
T Consensus 151 SCTtn~~~~l~pv~~vi~~~f 171 (172)
T d1rm4a1 151 SNEWGYSQRVVDLADIVANKW 171 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHHTC
T ss_pred cchhccHhHhHHHHHHHHhhc
Confidence 9994 44777778887776
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.52 E-value=9.2e-14 Score=118.34 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=106.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC--CCceEEEEEeecCCC--------------Cc---eeee---------------
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD--FPYRSIKMLASKRSA--------------GK---QLSF--------------- 84 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~--~p~~~l~~l~s~~s~--------------G~---~~~~--------------- 84 (279)
+|||||.| .|.+||.++|.+.+++ .+.++++++...... |+ .+..
T Consensus 2 ~ikigING-FGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~ 80 (190)
T d1k3ta1 2 PIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVV 80 (190)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEE
T ss_pred CeEEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceEE
Confidence 47999999 9999999999887663 267888887643211 10 1110
Q ss_pred CCceeE-Ee-ecCccC--CC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhcccc
Q 023678 85 QDKAYT-VE-ELTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158 (279)
Q Consensus 85 ~~~~~~-v~-~~d~~~--~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~ 158 (279)
.+..+. +. +-++.+ |. ++|+|+.|+|...+++.+..++++|++-|=.|++. .++.|.+|.+||++.+..-
T Consensus 81 ~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~--~~~~~tiV~GVN~~~y~~~-- 156 (190)
T d1k3ta1 81 NGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPA--SGGAKTLVMGVNHHEYNPS-- 156 (190)
T ss_dssp TTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC--BSSCEECCTTTTGGGCCTT--
T ss_pred cCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeeeccCC--cccCCeEEeccCHhhcCCc--
Confidence 011111 11 223333 43 89999999999999999999999999534367765 3456899999999988631
Q ss_pred CCCCCcEEECCCChHHHHHHhhhchhhhcCccE
Q 023678 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTR 191 (279)
Q Consensus 159 ~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~ 191 (279)
+.+|||+.+|+|.++++.++.|+..|++++
T Consensus 157 ---~~~IIS~ASCTtn~lapv~kvi~~~f~~~~ 186 (190)
T d1k3ta1 157 ---EHHVVSNADNEWGYSHRVVDLVRHMASKDR 186 (190)
T ss_dssp ---TCSEEECCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ---cCcEEEchhHhhhHHHHHHHHHHHHhcccc
Confidence 468999999999999999999998888763
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=99.47 E-value=2.1e-13 Score=114.01 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=100.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-CC-------------Cc---eee-------eCCceeEEee-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SA-------------GK---QLS-------FQDKAYTVEE- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s~-------------G~---~~~-------~~~~~~~v~~- 93 (279)
++||||.| .|.+||.++|.+.++ +.++++++.... +. |+ .+. ..+..+.+..
T Consensus 1 kikIgING-FGRIGR~v~R~~~~~--~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~ 77 (169)
T d1u8fo1 1 KVKVGVNG-FGRIGRLVTRAAFNS--GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQE 77 (169)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHH--CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred CcEEEEEC-CcHHHHHHHHHHHHC--CCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEEC
Confidence 37999999 999999999999888 889999886532 10 11 011 1223344432
Q ss_pred cCcc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC
Q 023678 94 LTED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 94 ~d~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
-++. .|. ++|+|+.|+|...+++-+..++++|++-|=+|++. .|.+.+|.+||.+.+.. +.++||+.
T Consensus 78 ~~p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~---~d~~tiV~GvN~~~~~~------~~~iIS~a 148 (169)
T d1u8fo1 78 RDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS---ADAPMFVMGVNHEKYDN------SLKIISNA 148 (169)
T ss_dssp SSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC---SSSCBCCTTTTGGGCCT------TCSEEECC
T ss_pred CChhhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeecccc---cccceEEeecCHHHcCC------CCCEEECc
Confidence 2222 364 79999999999999999988999999533367764 24577899999999873 56899999
Q ss_pred CChHHHHHHhhhchhh
Q 023678 170 NCSTIICLMAATPLHR 185 (279)
Q Consensus 170 gC~tt~l~laL~PL~~ 185 (279)
+|+|.++++.++.|..
T Consensus 149 SCTtn~~aPv~~vl~~ 164 (169)
T d1u8fo1 149 SNEFGYSNRVVDLMAH 164 (169)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999988743
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=99.45 E-value=5e-13 Score=111.62 Aligned_cols=137 Identities=16% Similarity=0.194 Sum_probs=100.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-------------Cc---eee-------eCCceeEEe-ecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK---QLS-------FQDKAYTVE-ELT 95 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-------------G~---~~~-------~~~~~~~v~-~~d 95 (279)
|||||.| .|.+||.++|.|.++ .++++++....+. |+ .+. ..++.+.+. .-+
T Consensus 1 ikigING-fGRIGR~~~R~l~~~---~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~ 76 (168)
T d2g82a1 1 MKVGING-FGRIGRQVFRILHSR---GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKD 76 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHH---TCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEEC-CcHHHHHHHHHHhcC---CCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCC
Confidence 6899999 899999999999875 5678887643211 10 011 122334443 223
Q ss_pred cc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 96 ED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 96 ~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
+. .|. ++|+|+.|+|...+++.+..++++|++-|=+|++. .++.+.+|.++|+++++.- +.+||||.+|
T Consensus 77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~--kd~~~~iV~GvN~~~y~~~-----~~~IIS~ASC 149 (168)
T d2g82a1 77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA--KGEDITIVMGVNHEAYDPS-----RHHIISNASN 149 (168)
T ss_dssp GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC--BSCSEECCTTTTGGGCCTT-----TCCEEECCCT
T ss_pred hHHCcccccCCceeEeccccccchHHhhhhhccccceeeecccc--ccccceeEeeccHHHccCC-----CCcEEEeccc
Confidence 33 353 78999999999999999999999999533367764 3444788999999998731 4689999999
Q ss_pred h---HHHHHHhhhchhhhc
Q 023678 172 S---TIICLMAATPLHRRA 187 (279)
Q Consensus 172 ~---tt~l~laL~PL~~~~ 187 (279)
+ |+++++.|+.|++++
T Consensus 150 T~~~tN~laPv~k~i~~k~ 168 (168)
T d2g82a1 150 EWGYANRVADLVELVLRKG 168 (168)
T ss_dssp THHHHHHHHHHHHHHHHHC
T ss_pred cCccHHHHHHHHHHHhhcC
Confidence 9 899999999998763
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=2.1e-12 Score=107.86 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=99.2
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-------------Cc---eeee-------CCceeEEee-cCc
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK---QLSF-------QDKAYTVEE-LTE 96 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-------------G~---~~~~-------~~~~~~v~~-~d~ 96 (279)
||||.| .|.+||.++|.+.+++.+.++++++....+. |+ .+.. .++.+.+.. -++
T Consensus 2 kIgING-fGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p 80 (169)
T d1hdgo1 2 RVAING-FGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (169)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred EEEEEC-CChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence 899999 8999999999988765588999998653211 11 1111 223344432 223
Q ss_pred c--CCC--CCcEEEecCCCchhhhhHHHHHhCCCE-EEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 97 D--SFD--GVDIALFSAGGSISKKFGPIAVEKGSI-VVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 97 ~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~-VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
+ .|. ++|+|+.|+|...+++-+..++++|++ || +|++. .++.+.+|.+||++++.. +..+|||.+|
T Consensus 81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkVi-iSAP~--kd~~~tiV~GvN~~~~~~------~~~iiS~aSc 151 (169)
T d1hdgo1 81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVI-ITAPA--KGEDITVVIGCNEDQLKP------EHTIISCASN 151 (169)
T ss_dssp GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEE-ESSCC--BSCSEECCTTTTGGGCCT------TCCEEECCCT
T ss_pred hhCCccccCCCEEEEecceeccccchhhhccCCCceEE-Eeccc--CCCcceeEEecchhhcCC------cCcEEEchhH
Confidence 3 353 799999999999999999999999994 54 67765 333477899999999874 5789999999
Q ss_pred hHHHHHHhhhchhh
Q 023678 172 STIICLMAATPLHR 185 (279)
Q Consensus 172 ~tt~l~laL~PL~~ 185 (279)
++.+++..+..|+.
T Consensus 152 ttn~~a~v~~vi~~ 165 (169)
T d1hdgo1 152 EYGYSNRVVDTLEL 165 (169)
T ss_dssp THHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 99998877755543
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.41 E-value=1.2e-12 Score=109.07 Aligned_cols=135 Identities=15% Similarity=0.210 Sum_probs=99.7
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-CC-------------Cc---eee-------eCCceeEEee-cC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SA-------------GK---QLS-------FQDKAYTVEE-LT 95 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s~-------------G~---~~~-------~~~~~~~v~~-~d 95 (279)
||||.| .|.+||.++|.+.++ |.++++++.... +. |+ .+. ..++.+.+.. -+
T Consensus 2 kigING-fGRIGR~v~R~~~~~--~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~ 78 (166)
T d2b4ro1 2 KLGING-FGRIGRLVFRAAFGR--KDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD 78 (166)
T ss_dssp EEEEEC-CSHHHHHHHHHHHTC--SSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS
T ss_pred eEEEEC-CCHHHHHHHHHHhhC--CCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCC
Confidence 799999 899999999999988 999999997532 11 11 111 1223344432 23
Q ss_pred cc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 96 ED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 96 ~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
+. .|. ++|+|+.|+|...+++.+..++++|++-|=+|++. .++.+.+|.+||.+.+.. +.++|||.+|
T Consensus 79 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~--kd~~~tiV~GVN~~~~~~------~~~IIS~AS~ 150 (166)
T d2b4ro1 79 PSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPP--KDDTPIYVMGINHHQYDT------KQLIVSNASN 150 (166)
T ss_dssp GGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC--SSSCCBCCTTTTGGGCCT------TCCEEECCCT
T ss_pred hHHccccccCCCEEEEecccccchhhhhhhhccCCCEEEEeccc--ccccceeeeecchhhcCC------CCCEEEChhH
Confidence 33 354 89999999999999999999999999533377765 345688999999999874 5689999999
Q ss_pred hHHHHHHhhhchhhhcCc
Q 023678 172 STIICLMAATPLHRRAKV 189 (279)
Q Consensus 172 ~tt~l~laL~PL~~~~~i 189 (279)
++. +.++.|++.|+|
T Consensus 151 ~~a---p~~kvl~~~fgI 165 (166)
T d2b4ro1 151 EWG---YSNRVLDLAVHI 165 (166)
T ss_dssp THH---HHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHcCc
Confidence 754 555677777765
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=99.26 E-value=3.4e-12 Score=106.98 Aligned_cols=142 Identities=17% Similarity=0.160 Sum_probs=102.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCc----------------eee-------eCCceeEEe-e
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGK----------------QLS-------FQDKAYTVE-E 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~----------------~~~-------~~~~~~~v~-~ 93 (279)
+|||||.| .|.+||.++|.+.+++ .+.++++++........ .+. ..++.+.+. .
T Consensus 1 tikigING-fGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~ 79 (173)
T d1obfo1 1 TIRVAING-YGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN 79 (173)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred CeEEEEEC-CcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEec
Confidence 47999999 8999999999987542 47899998875422100 010 022334443 2
Q ss_pred cCcc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC
Q 023678 94 LTED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 94 ~d~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
-++. .|. ++|+|+.|+|...+++.+..++++|++-|=+|++.- ++..+.+|.+||.+.+.. +.++|||.
T Consensus 80 ~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~-~~~d~tiV~GVN~~~~~~------~~~IISnA 152 (173)
T d1obfo1 80 RNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGG-ADVDATVVYGVNHGTLKS------TDTVISNA 152 (173)
T ss_dssp SCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCC-TTSSEECCTTTSGGGCCT------TCCEEECC
T ss_pred CCHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCCC-CCCcceEEEecchhhcCC------CCCEEECC
Confidence 2333 353 789999999999999999999999996444787753 333488999999999874 57899998
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeecccc
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASG 202 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSG 202 (279)
+ +.|+|+...+||.++++-
T Consensus 153 s--------------~~fgI~~g~mtTih~~ts 171 (173)
T d1obfo1 153 D--------------NEWGFSNRMLDTTVALMS 171 (173)
T ss_dssp C--------------TTHHHHHHHHHHHHHHHH
T ss_pred c--------------cccCceeeEEEeeheeee
Confidence 5 777888777888877653
|
| >d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=99.25 E-value=1e-12 Score=109.30 Aligned_cols=71 Identities=8% Similarity=0.101 Sum_probs=61.4
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCC
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
+|+|++++++|+||++.|+|+++.++|||++||+|+.+ +++++|++|++.+
T Consensus 1 SCtT~~l~~~lkpL~~~fgI~~~~vtT~qa~s~~~~~~-----------------------~~~~~niip~~~~------ 51 (165)
T d1cf2o2 1 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPAQVS-----------------------KGPINAIIPNPPK------ 51 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEEEEEEESSCTTCTT-----------------------CCCSSCCEESSSS------
T ss_pred CChHHHHHHHHHHHHHHcCceEEEEEEEECCcCCcccc-----------------------ccccccccCCCcH------
Confidence 69999999999999999999999999999999999653 2368999999876
Q ss_pred hHHHHhHHHHHHHhcCCCCccEEee
Q 023678 250 NEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 250 t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
||.|+..|++|||+ ++|+.+
T Consensus 52 --~~~~~~~e~~kil~---~~i~~t 71 (165)
T d1cf2o2 52 --LPSHHGPDVKTVLD---INIDTM 71 (165)
T ss_dssp --SSCTHHHHHHTTSC---CCEEEE
T ss_pred --HHHHHHHHhhhhcC---CcEEEE
Confidence 78999999999994 455544
|
| >d1vkna2 d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=4.8e-12 Score=105.04 Aligned_cols=87 Identities=20% Similarity=0.349 Sum_probs=70.4
Q ss_pred ChHHHHHHhhhchhhhcCcc--EEEEEEeecccccChhh-----------------------HHHHHHHHHHHhcCCCCC
Q 023678 171 CSTIICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAA-----------------------MEELELQTREVLEGKPPT 225 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~--~v~vtt~q~vSGaG~~~-----------------------~~El~~qt~~l~~g~~~~ 225 (279)
||+|+++++|+||.+.+.|+ .++|++++|+|||||++ .+|++|++..+. |..++
T Consensus 1 CyaT~~~l~l~PLv~~gli~~~~i~i~a~SG~SGaGk~~~~~~~~~~~~~~~~~Y~~~~HrH~pEi~q~l~~~~-~~~~~ 79 (163)
T d1vkna2 1 CYPTSVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVDYLFSEVNESLRPYNVAKHRHVPEMEQELGKIS-GKKVN 79 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCSEEEEEEEEEGGGGCSCCSGGGBHHHHTTCCEECSCSCCTHHHHHHHHHHHHH-TSCCE
T ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEeecccccccccccccccccccccccccchhhhccccHHHHHHHHhhc-CCccc
Confidence 99999999999999988774 79999999999999997 399999998764 55444
Q ss_pred ccccccccccccccCCCCcccCCChHHHHhHHHHHHHhc
Q 023678 226 CKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264 (279)
Q Consensus 226 ~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil 264 (279)
+ .|.+++.|+.+|++.+.|.+.+. ..+|++++|
T Consensus 80 ~-----~F~Phl~p~~RGil~ti~~~~~~-s~~~i~~~~ 112 (163)
T d1vkna2 80 V-----VFTPHLVPMTRGILSTIYVKTDK-SLEEIHEAY 112 (163)
T ss_dssp E-----EEEEEEESSSSCEEEEEEEECSS-CHHHHHHHH
T ss_pred E-----EEEEeeccccceeeeeeeecccc-cchHHHHHH
Confidence 4 47899999999999998855432 234555554
|
| >d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=99.09 E-value=1.8e-11 Score=101.68 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=68.9
Q ss_pred ChHHHHHHhhhchhhhcCcc--EEEEEEeecccccChhh-----------------------HHHHHHHHHHHhcCCCCC
Q 023678 171 CSTIICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAA-----------------------MEELELQTREVLEGKPPT 225 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~--~v~vtt~q~vSGaG~~~-----------------------~~El~~qt~~l~~g~~~~ 225 (279)
||+|+++++|+||.+.+.|+ .++|++++|+|||||++ .+|++|++..+. +..++
T Consensus 1 CyaT~~il~l~PL~~~gli~~~~i~i~a~SG~SGaGk~~~~~~~~~~~~~n~~~Y~~~~HrH~pEi~q~l~~~~-~~~~~ 79 (165)
T d2cvoa2 1 CYPTSIQLPLVPLIKAKLIKVSNIIIDAKSGVSGAGRGAKEANLYTEIAEGIHAYGIKGHRHVPEIEQGLSEAA-ESKVT 79 (165)
T ss_dssp HHHHHHHHHHHHHHHTTCBCSSSCEEEEEEEGGGGCSCCCGGGBHHHHTTCCEECSCSCCTHHHHHHHHHHHHH-TSCCC
T ss_pred CchHHHHHHHHHHHHcCCCCCCCeEEEEeccccccccccchhhhhhhhhhceeccchhccccCcHHHHHhhhcc-CCCcc
Confidence 99999999999999988774 79999999999999998 399999998764 44444
Q ss_pred ccccccccccccccCCCCcccCCChHHHH-hHHHHHHHhc
Q 023678 226 CKIFSQQYAFNLFSHNAPVLENGYNEEEM-KMVKETRKIW 264 (279)
Q Consensus 226 ~~~f~~~iafN~iP~i~~~~~~g~t~eE~-k~~~E~~kil 264 (279)
+ .|.+++.|+.+|++.+.|..-.. -..+|++++|
T Consensus 80 ~-----~F~P~l~p~~RGil~ti~~~~~~~~~~~~i~~~~ 114 (165)
T d2cvoa2 80 I-----SFTPNLICMKRGMQSTMFVEMAPGVTANDLYQHL 114 (165)
T ss_dssp C-----EEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHH
T ss_pred E-----EEEeeeccccceeEEecccccccccchHHHHHHH
Confidence 3 37899999999999888753221 1334444444
|
| >d2g17a2 d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=98.95 E-value=9.1e-11 Score=96.44 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=58.3
Q ss_pred ChHHHHHHhhhchhhhcCcc---EEEEEEeecccccChhh---------------------HHHHHHHHHHHhcCCCCCc
Q 023678 171 CSTIICLMAATPLHRRAKVT---RMVVSTYQAASGAGAAA---------------------MEELELQTREVLEGKPPTC 226 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~---~v~vtt~q~vSGaG~~~---------------------~~El~~qt~~l~~g~~~~~ 226 (279)
||+|+++++|+||.+...|+ .++|++++|+|||||++ .+|++|++. . +
T Consensus 1 CyaTa~~l~L~PL~~~gli~~~~~i~i~a~SG~SGaG~~~~~~~~~~~~~~~~Y~~~~HrH~pEI~q~l~-----~--~- 72 (155)
T d2g17a2 1 CYPTAAQLSLKPLIDGGLLDLTQWPVINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEIAVHLG-----A--E- 72 (155)
T ss_dssp HHHHHHHHHHHHHHHTTCBCTTSCCEEEEEECGGGGCSCCCSTTSGGGCSEEECSTTTCTHHHHHHHHHT-----S--C-
T ss_pred ChHHHHHHHHHHHHHcCCCCCCCceEEEeeeccccccccchhhhccccceeeeccccccccHHHHHHHhC-----c--C-
Confidence 99999999999999987774 47999999999999976 499988753 1 1
Q ss_pred cccccccccccccCCCCcccCCChH
Q 023678 227 KIFSQQYAFNLFSHNAPVLENGYNE 251 (279)
Q Consensus 227 ~~f~~~iafN~iP~i~~~~~~g~t~ 251 (279)
..|.++++|+.+|++.+.|..
T Consensus 73 ----i~F~Phl~p~~RGIl~Ti~~~ 93 (155)
T d2g17a2 73 ----VIFTPHLGNFPRGILETITCR 93 (155)
T ss_dssp ----CEEEEEEESSSSCEEEEEEEE
T ss_pred ----ceeeecccccccccccccccc
Confidence 257899999999999888853
|
| >d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.89 E-value=4.3e-10 Score=92.91 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=49.3
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCC
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHN 241 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i 241 (279)
|+|++++++|+||+++|+|+++.++|||++||+|+.. +......|+.|++||..|++
T Consensus 1 CsT~~l~~~lkpL~~~fgi~rv~vtt~qa~s~~g~~~--------------~~~~~~~~~~p~~~~~~~~~ 57 (162)
T d1b7go2 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQKEVK--------------KGPINSLVPDPATVPSHHAK 57 (162)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEEEEEEESSCTTCCS--------------CCCSSCCEESSSSSSCTHHH
T ss_pred CcHHHHHHHHHHHHHHhCEEEEEEEEEeeccCCcccc--------------ccccccccccccccccccce
Confidence 9999999999999999999999999999999999753 33445578888899988864
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.80 E-value=1.8e-08 Score=82.77 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=66.7
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-ccCCCCCcEEEecCCCchhh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~ 115 (279)
|+++||+|+| +|++|+.+++.|.++ |.++++.+.+++..-.. ...... ..+ .....++|+|+.|+|+....
T Consensus 1 M~kirvgiiG-~G~ig~~~~~~l~~~--~~~elvav~~~~~~~~~----~~~~~~-~~~~~~~~~~~D~Vvi~tp~~~h~ 72 (170)
T d1f06a1 1 MTNIRVAIVG-YGNLGRSVEKLIAKQ--PDMDLVGIFSRRATLDT----KTPVFD-VADVDKHADDVDVLFLCMGSATDI 72 (170)
T ss_dssp CCCEEEEEEC-CSHHHHHHHHHHTTC--SSEEEEEEEESSSCCSS----SSCEEE-GGGGGGTTTTCSEEEECSCTTTHH
T ss_pred CCcceEEEEC-ChHHHHHHHHHHHhC--CCcEEEEEEeccccccc----cccccc-chhhhhhccccceEEEeCCCcccH
Confidence 5678999999 699999999999887 99999999876542111 011111 112 22346799999999999999
Q ss_pred hhHHHHHhCCCEEEEcC
Q 023678 116 KFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS 132 (279)
+++.+++++|+.||+-.
T Consensus 73 ~~a~~aL~aG~~vv~~~ 89 (170)
T d1f06a1 73 PEQAPKFAQFACTVDTY 89 (170)
T ss_dssp HHHHHHHTTTSEEECCC
T ss_pred HHHHHHHHCCCcEEEec
Confidence 99999999999988543
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=9.5e-08 Score=79.64 Aligned_cols=95 Identities=19% Similarity=0.277 Sum_probs=59.3
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecC-c----cCCCCCcEEEecCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-E----DSFDGVDIALFSAG 110 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g 110 (279)
|.|.||+|+||||++|+.+++.|.+++| ++.++. |+... ......+.++...|+. . +.+.++|+||+|+|
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~---~V~~~~-R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g 76 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGY---EVTVLV-RDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEE-SCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEE-cChhhcccccccccccccccccchhhHHHHhcCCCEEEEEec
Confidence 5677999999999999999999988865 566664 32111 1111112222223432 1 23578999999987
Q ss_pred Cch-----------hhhhHHHHHhCCC-EEEEcCCCC
Q 023678 111 GSI-----------SKKFGPIAVEKGS-IVVDNSSAF 135 (279)
Q Consensus 111 ~~~-----------s~~~~~~~~~aG~-~VIDlS~~~ 135 (279)
... ++.+++.+.++|+ ++|=+|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~ 113 (205)
T d1hdoa_ 77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF 113 (205)
T ss_dssp CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGG
T ss_pred cCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEeeee
Confidence 531 2345666677787 466666643
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=3.6e-07 Score=74.83 Aligned_cols=122 Identities=14% Similarity=0.137 Sum_probs=82.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC---CCceeee----CCceeEEeecCccCCCCCcEEEecCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF----QDKAYTVEELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s---~G~~~~~----~~~~~~v~~~d~~~~~~~DvVf~a~g 110 (279)
+.+||+|+||+|..|+++++.+.+. +.++++....++. .|+.+.. ....+.+.+-....+..+|+++..+.
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~--~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~ 80 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALAL--EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR 80 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHS--TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc
Confidence 4689999999999999999999888 8899886655432 2322111 11123333211234568999999999
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHH
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTI 174 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt 174 (279)
++.+.++++.+.+.|+.+|--+.-|- .++++.++...++..++-.||-+--
T Consensus 81 p~~~~~~~~~a~~~~~~~ViGTTG~~-------------~~~~~~i~~~a~~ipi~~apN~SlG 131 (162)
T d1diha1 81 PEGTLNHLAFCRQHGKGMVIGTTGFD-------------EAGKQAIRDAAADIAIVFAANFSMT 131 (162)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCCC-------------HHHHHHHHHHTTTSCEEECSCCCHH
T ss_pred HHHHHHHHHHHHhccceeEEecCCCc-------------HHHHHHHHHHcCCCCEEEEccccHH
Confidence 99999999999999998886666652 2333222211124678999997743
|
| >d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.43 E-value=9.7e-08 Score=78.48 Aligned_cols=68 Identities=10% Similarity=0.029 Sum_probs=53.1
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCC
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
+|+|++|+++|+||++.+++.++++. +++| ++..+..++++|++|+++. .||
T Consensus 1 SC~T~~l~~~L~pL~~~~~~~rvv~v-----r~a~--------------------dp~~~~~~i~~nviP~~~~---~~~ 52 (162)
T d2czca1 1 SCNTTGLVRTLSAIREYADYVYAVMI-----RRAA--------------------DPNDTKRGPINAIKPTVEV---PSH 52 (162)
T ss_dssp CHHHHHHHHHHHHHGGGEEEEEEEEE-----EESS--------------------CTTCCSCCCSSCCEECCSS---SCT
T ss_pred CChHHHHHHHHHHHHHHhCceEEEEE-----Cccc--------------------CcccccCCcccccccCCCC---CCc
Confidence 69999999999999999999888774 3333 2334566789999999853 799
Q ss_pred hHHHHhHHHHHHHhcCCCCccEEee
Q 023678 250 NEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 250 t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
+.||+|+. +++.|+.|
T Consensus 53 ~~~d~~~v---------~~i~v~~t 68 (162)
T d2czca1 53 HGPDVQTV---------IPINIETM 68 (162)
T ss_dssp HHHHHTTT---------SCCCEEEE
T ss_pred cchhhccc---------CCeEEEEE
Confidence 99998864 45666665
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.2e-06 Score=74.22 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=60.0
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCCce-EEEEEeecCCCCceee-eCCceeEEeecC-c----cCCCCCcEEEec
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRSAGKQLS-FQDKAYTVEELT-E----DSFDGVDIALFS 108 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~-~l~~l~s~~s~G~~~~-~~~~~~~v~~~d-~----~~~~~~DvVf~a 108 (279)
.|+.++|.|.||||++|++|++.|.++ ..+ ++.++ +|+....... .......+.|++ . ..+.++|++|.|
T Consensus 11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~--g~~~~v~~~-~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~ 87 (232)
T d2bkaa1 11 RMQNKSVFILGASGETGRVLLKEILEQ--GLFSKVTLI-GRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCC 87 (232)
T ss_dssp HHTCCEEEEECTTSHHHHHHHHHHHHH--TCCSEEEEE-ESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEEC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhC--CCCCEEEEE-ecChhhhcccccceeeeeeeccccccccccccccccccccc
Confidence 355679999999999999999999887 443 66666 4543322111 111122233332 1 235789999999
Q ss_pred CCCch---------------hhhhHHHHHhCCCE-EEEcCCCC
Q 023678 109 AGGSI---------------SKKFGPIAVEKGSI-VVDNSSAF 135 (279)
Q Consensus 109 ~g~~~---------------s~~~~~~~~~aG~~-VIDlS~~~ 135 (279)
++... +...+..+.+.|++ +|=.|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~ 130 (232)
T d2bkaa1 88 LGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG 130 (232)
T ss_dssp CCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred ccccccccchhhhhhhcccccceeeecccccCccccccCCccc
Confidence 87532 23455556678886 55555544
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.12 E-value=1.1e-06 Score=70.89 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=60.8
Q ss_pred CCEEEEECcCcHHHHH-HHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~e-Ll~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
++|||||| +|.+|+. .++.|..+ +.++++.+.++...-. .+... -...+.+.-.+...++|+|+.|+++....+
T Consensus 1 Kiri~iIG-~G~~g~~~~~~~l~~~--~~~~i~~v~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~ 76 (164)
T d1tlta1 1 KLRIGVVG-LGGIAQKAWLPVLAAA--SDWTLQGAWSPTRAKALPICES-WRIPYADSLSSLAASCDAVFVHSSTASHFD 76 (164)
T ss_dssp CEEEEEEC-CSTHHHHTHHHHHHSC--SSEEEEEEECSSCTTHHHHHHH-HTCCBCSSHHHHHTTCSEEEECSCTTHHHH
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHhC--CCcEEEEEEechhHhhhhhhhc-ccccccccchhhhhhcccccccccchhccc
Confidence 37999999 6999976 67888877 8999999887654321 11100 011111100111357899999999999999
Q ss_pred hHHHHHhCCCEEE
Q 023678 117 FGPIAVEKGSIVV 129 (279)
Q Consensus 117 ~~~~~~~aG~~VI 129 (279)
++.+++++|..|+
T Consensus 77 ~~~~al~~gk~V~ 89 (164)
T d1tlta1 77 VVSTLLNAGVHVC 89 (164)
T ss_dssp HHHHHHHTTCEEE
T ss_pred cccccccccceee
Confidence 9999999999876
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.99 E-value=2.6e-06 Score=68.50 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=57.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|||+||| .|.+|..+.+.|.+.+| ++..+ +++.... .....+.-.... .+.+.+.++|+||+|+|.....+.+
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~---~V~~~-d~~~~~~~~a~~~~~~~~~~-~~~~~~~~~DiIilavp~~~~~~vl 74 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGH---YLIGV-SRQQSTCEKAVERQLVDEAG-QDLSLLQTAKIIFLCTPIQLILPTL 74 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHTTSCSEEE-SCGGGGTTCSEEEECSCHHHHHHHH
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCC---EEEEE-ECCchHHHHHHHhhccceee-eecccccccccccccCcHhhhhhhh
Confidence 6899999 59999999999988765 44444 4432110 000111000111 1234567899999999988777777
Q ss_pred HHHH---hCCCEEEEcCCC
Q 023678 119 PIAV---EKGSIVVDNSSA 134 (279)
Q Consensus 119 ~~~~---~aG~~VIDlS~~ 134 (279)
.++. ..++.|+|.++.
T Consensus 75 ~~l~~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 75 EKLIPHLSPTAIVTDVASV 93 (165)
T ss_dssp HHHGGGSCTTCEEEECCSC
T ss_pred hhhhhhcccccceeecccc
Confidence 7664 467788888764
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.99 E-value=2.6e-06 Score=70.55 Aligned_cols=93 Identities=18% Similarity=0.248 Sum_probs=52.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchh-----
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS----- 114 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s----- 114 (279)
+||.|.||||++|++|++.|.++++ ..++..+ +|+..............+.++.......+|+||.|++....
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~-~~~v~~~-~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~~~~~~~~ 80 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPT-LAKVIAP-ARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSE 80 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTT-CCEEECC-BSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCCHHHHSSH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCC-eEEEEEE-eCCchhhcccccccccchhhhhhccccchheeeeeeeeeccccccc
Confidence 6999999999999999999988843 2344433 44332211000000000111111223568999999876532
Q ss_pred -----------hhhHHHHHhCCCE-EEEcCCC
Q 023678 115 -----------KKFGPIAVEKGSI-VVDNSSA 134 (279)
Q Consensus 115 -----------~~~~~~~~~aG~~-VIDlS~~ 134 (279)
...+..+.+.|++ +|-.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~ 112 (212)
T d2a35a1 81 EAFRAVDFDLPLAVGKRALEMGARHYLVVSAL 112 (212)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred cccccchhhhhhhccccccccccccccccccc
Confidence 2344455567764 5556654
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.94 E-value=1.7e-05 Score=62.72 Aligned_cols=103 Identities=13% Similarity=0.201 Sum_probs=73.6
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHHH
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~~ 120 (279)
||+|+||+|..|+++++.+.++ +.++++...++. ..+ ......++|+|+..+.++...++++.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~--~~~~l~~~~d~~---~~~------------~~~~~~~~DvvIDFS~p~~~~~~~~~ 63 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA--DDLTLSAELDAG---DPL------------SLLTDGNTEVVIDFTHPDVVMGNLEF 63 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS--TTSEEEEEECTT---CCT------------HHHHTTTCSEEEECCCTTTHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecC---Cch------------hhhccccCCEEEEcccHHHHHHHHHH
Confidence 7999999999999999999887 888887655321 111 00112468999999999999999999
Q ss_pred HHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhcccc---CCCCCcEEECCCChH
Q 023678 121 AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV---GMGKGALIANPNCST 173 (279)
Q Consensus 121 ~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~---~~~~~~iVanPgC~t 173 (279)
+++.|+.+|--+.-| +.++++.++. ..++..++-.||-+.
T Consensus 64 ~~~~~~~~ViGTTG~-------------~~~~~~~l~~~~~~~~~ipil~apNfSl 106 (135)
T d1yl7a1 64 LIDNGIHAVVGTTGF-------------TAERFQQVESWLVAKPNTSVLIAPNFTS 106 (135)
T ss_dssp HHHTTCEEEECCCCC-------------CHHHHHHHHHHHHSCTTCEEEECSCCGG
T ss_pred HHhcCCCEEEecccc-------------chhHHHHHHHHHHhcCCCCEEEcCCccH
Confidence 999999988666655 2233322211 012467899999774
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.93 E-value=5.2e-05 Score=59.21 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=70.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~ 119 (279)
|||+|+||+|..|+.+.+.+.+++ .+++...++. ..+.+.++|+++..+.++...++++
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~---~~l~~~id~~------------------~~~~~~~~DVvIDFS~p~~~~~~l~ 59 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKG---HELVLKVDVN------------------GVEELDSPDVVIDFSSPEALPKTVD 59 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEEETT------------------EEEECSCCSEEEECSCGGGHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhcCC---CeEEEEECCC------------------cHHHhccCCEEEEecCHHHHHHHHH
Confidence 689999999999999999888764 3444322211 0123456899999999999999999
Q ss_pred HHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChH
Q 023678 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCST 173 (279)
Q Consensus 120 ~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~t 173 (279)
.+.+.|+.+|--+.-| +.++++.++.--++..++-.||++-
T Consensus 60 ~~~~~~~p~ViGTTG~-------------~~~~~~~i~~~ak~~pv~~a~N~s~ 100 (128)
T d1vm6a3 60 LCKKYRAGLVLGTTAL-------------KEEHLQMLRELSKEVPVVQAYSRTV 100 (128)
T ss_dssp HHHHHTCEEEECCCSC-------------CHHHHHHHHHHTTTSEEEECSCTHH
T ss_pred HHHhcCCCEEEEcCCC-------------CHHHHHHHHHHHhhCCEEeeeccCh
Confidence 9999999988666655 2233322211002567888999874
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.91 E-value=4.7e-06 Score=68.21 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=60.7
Q ss_pred CCCCEEEEECcCcHHHHH-HHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecCc-cCCCCCcEEEecCCCc
Q 023678 37 ESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELTE-DSFDGVDIALFSAGGS 112 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~e-Ll~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~-~~~~~~DvVf~a~g~~ 112 (279)
|+++|||||| +|.+|+. .++.+.+.+ ..++++.+.++...- +.+.. .+....+.+++. -+-.++|+|+.|+++.
T Consensus 1 MkkirigiIG-~G~~g~~~h~~~l~~~~-~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~ 78 (181)
T d1zh8a1 1 LRKIRLGIVG-CGIAARELHLPALKNLS-HLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE 78 (181)
T ss_dssp CCCEEEEEEC-CSHHHHHTHHHHHHTTT-TTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred CCCcEEEEEc-CCHHHHHHHHHHHHhCC-CCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccc
Confidence 5678999999 7999987 477777651 457999887654211 11110 011111222221 0114689999999999
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
...+++..++++|..|+
T Consensus 79 ~h~~~~~~al~~gk~V~ 95 (181)
T d1zh8a1 79 LNLPFIEKALRKGVHVI 95 (181)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred ccccccccccccchhhh
Confidence 99999999999999876
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.87 E-value=2e-05 Score=69.99 Aligned_cols=99 Identities=16% Similarity=0.079 Sum_probs=58.0
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-c----cCCCCCcEEEe
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-E----DSFDGVDIALF 107 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~ 107 (279)
||+. |||.|.||||++|+.|++.|.+++| +++.+..++............+...++. . ..+.++|.||-
T Consensus 12 ~~~n---MKILVTGgsGfIGs~lv~~L~~~g~---~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih 85 (363)
T d2c5aa1 12 PSEN---LKISITGAGGFIASHIARRLKHEGH---YVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFN 85 (363)
T ss_dssp TTSC---CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCC---CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEee
Confidence 5654 7999999999999999999998865 4444532222111111112233333432 1 12468899987
Q ss_pred cCCCch-------------------hhhhHHHHHhCCC-EEEEcCCCCCC
Q 023678 108 SAGGSI-------------------SKKFGPIAVEKGS-IVVDNSSAFRM 137 (279)
Q Consensus 108 a~g~~~-------------------s~~~~~~~~~aG~-~VIDlS~~~R~ 137 (279)
+.+... +..++..+.+.|+ ++|..|+..-.
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~ 135 (363)
T d2c5aa1 86 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIY 135 (363)
T ss_dssp CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGS
T ss_pred cccccccccccccccccccccccchhhHHHHhHHhhCccccccccccccc
Confidence 663221 1223445567887 57877776543
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.79 E-value=9.7e-06 Score=65.66 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=58.2
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCceeeeCCceeEEeecCccCC--CCCcEEEecC
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSA 109 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~--~~~DvVf~a~ 109 (279)
|.+.+.++||+||| .|++|+..++.|.+.. ...+.++...+++...... .....+++ +.+ .++|+|+.|+
T Consensus 1 ~~~~~~k~kv~iIG-~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-e~l~~~~iD~V~I~t 73 (172)
T d1lc0a1 1 MITNSGKFGVVVVG-VGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLD-----EVRQISLE-DALRSQEIDVAYICS 73 (172)
T ss_dssp CCCCCCSEEEEEEC-CSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEET-----TEEBCCHH-HHHHCSSEEEEEECS
T ss_pred CCCCCCCcEEEEEc-CCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhh-----ccCcCCHH-HHHhCCCcchhhhcc
Confidence 34445579999999 6999999999887651 1234443333333222111 11111111 111 4689999999
Q ss_pred CCchhhhhHHHHHhCCCEEE
Q 023678 110 GGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VI 129 (279)
|+....+++.+++++|..|+
T Consensus 74 p~~~H~~~~~~al~~gk~V~ 93 (172)
T d1lc0a1 74 ESSSHEDYIRQFLQAGKHVL 93 (172)
T ss_dssp CGGGHHHHHHHHHHTTCEEE
T ss_pred cccccccccccccccchhhh
Confidence 99999999999999999876
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.73 E-value=2.4e-05 Score=66.20 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=60.2
Q ss_pred CCEEEEECcCcHHHH-HHHHHHHcCCCCceEEEEEeecCCCC-ceee--eCC--ceeE-EeecCccCC--CCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSAG-KQLS--FQD--KAYT-VEELTEDSF--DGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~-eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~--~~~--~~~~-v~~~d~~~~--~~~DvVf~a~ 109 (279)
++|||||| .|.+|+ .+++.+..+ +.++++.+.+++..- +... ++. ..+. +.+++ +.+ .++|+|+.|+
T Consensus 33 ~iriaiIG-~G~~~~~~~~~~~~~~--~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~-ell~~~~iD~V~I~t 108 (221)
T d1h6da1 33 RFGYAIVG-LGKYALNQILPGFAGC--QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFD-KIAKDPKIDAVYIIL 108 (221)
T ss_dssp CEEEEEEC-CSHHHHHTHHHHTTTC--SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGG-GGGGCTTCCEEEECS
T ss_pred CEEEEEEc-CcHHHHHHHHHHHHhC--CCceEEEEecCCHHHHHHHHHhhccccccccccCchh-hhcccccceeeeecc
Confidence 58999999 699997 477777766 899999998754211 1110 111 1111 12222 112 4789999999
Q ss_pred CCchhhhhHHHHHhCCCEEE
Q 023678 110 GGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VI 129 (279)
++....+++.+++++|..|+
T Consensus 109 p~~~H~~~~~~al~~gk~v~ 128 (221)
T d1h6da1 109 PNSLHAEFAIRAFKAGKHVM 128 (221)
T ss_dssp CGGGHHHHHHHHHHTTCEEE
T ss_pred chhhhhhHHHHhhhcchhhh
Confidence 99999999999999999887
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.70 E-value=1.3e-05 Score=65.36 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=61.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceee--eCC-ceeEE-eecCc-cCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS--FQD-KAYTV-EELTE-DSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~--~~~-~~~~v-~~~d~-~~~~~~DvVf~a~g~~ 112 (279)
++|||||| .|.+|+..++.|... +.++++++.++... .+... +.. ....+ .+++. -.-.++|+|+.|+++.
T Consensus 1 kiki~iIG-~G~~g~~~~~~l~~~--~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~ 77 (184)
T d1ydwa1 1 QIRIGVMG-CADIARKVSRAIHLA--PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS 77 (184)
T ss_dssp CEEEEEES-CCTTHHHHHHHHHHC--TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG
T ss_pred CeEEEEEc-CCHHHHHHHHHHHhC--CCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccch
Confidence 37999999 699999999999877 89999988765321 01111 110 11222 23221 0114689999999999
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
...+++.+++++|..|+
T Consensus 78 ~h~~~~~~~l~~g~~v~ 94 (184)
T d1ydwa1 78 LHVEWAIKAAEKGKHIL 94 (184)
T ss_dssp GHHHHHHHHHTTTCEEE
T ss_pred hhcchhhhhhhccceee
Confidence 99999999999999876
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.69 E-value=1.1e-05 Score=64.02 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=56.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~ 119 (279)
|||+||| .|..|+.+.+.|.+++| ++.... ++.. +..........+.+...+...++|+||+|++...+.+.+.
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~---~v~~~~-~~~~-~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~ 74 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGV---EVVTSL-EGRS-PSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAAR 74 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTC---EEEECC-TTCC-HHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHH
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCC---eEEEEc-Cchh-HHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHH
Confidence 6899999 79999999999999865 343332 2211 1111100011111111223467999999999988877776
Q ss_pred HHHh-CCCEEEEcCCCC
Q 023678 120 IAVE-KGSIVVDNSSAF 135 (279)
Q Consensus 120 ~~~~-aG~~VIDlS~~~ 135 (279)
.... .|-.+||+|...
T Consensus 75 ~~~~~~~~~~id~st~~ 91 (152)
T d1i36a2 75 RAGRHVRGIYVDINNIS 91 (152)
T ss_dssp HHHTTCCSEEEECSCCC
T ss_pred hhcccCCceeeccCcCC
Confidence 5543 466899988753
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=0.0001 Score=58.03 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=56.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCC---ce--eEEeecCccCCCCCcEEEecCCCchh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD---KA--YTVEELTEDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~---~~--~~v~~~d~~~~~~~DvVf~a~g~~~s 114 (279)
|||+|+|+ |.+|..+...|.+.+| ++.++.........+...+ .. ..+...+.+...++|++|+|+.+...
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~ 76 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGH---EVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQV 76 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGH
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC---ceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccch
Confidence 79999996 9999999999998866 4555532222111111111 11 11111123334689999999999877
Q ss_pred hhhHHHHHh---CCCEEEEcCCCC
Q 023678 115 KKFGPIAVE---KGSIVVDNSSAF 135 (279)
Q Consensus 115 ~~~~~~~~~---aG~~VIDlS~~~ 135 (279)
.+..+.+.. .+..|+.+...+
T Consensus 77 ~~~~~~l~~~~~~~~~Iv~~qNG~ 100 (167)
T d1ks9a2 77 SDAVKSLASTLPVTTPILLIHNGM 100 (167)
T ss_dssp HHHHHHHHTTSCTTSCEEEECSSS
T ss_pred HHHHHhhccccCcccEEeeccCcc
Confidence 776666543 466677665543
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.61 E-value=2e-05 Score=63.36 Aligned_cols=86 Identities=19% Similarity=0.343 Sum_probs=56.1
Q ss_pred CCEEEEECcCcHHHHH-HHHHHHcCCCCceEEEEEeecCC-CCceeeeC-CceeEEeecCccCC-CCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ-DKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~e-Ll~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~-~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s 114 (279)
++|||||| .|..|+. .++.|... +.+++++ .+++. ..+.+... +....+.+.+ +.+ .++|+|+.|+|+...
T Consensus 1 tirvgiiG-~G~~~~~~~~~~l~~~--~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~iD~V~I~tp~~~H 75 (167)
T d1xeaa1 1 SLKIAMIG-LGDIAQKAYLPVLAQW--PDIELVL-CTRNPKVLGTLATRYRVSATCTDYR-DVLQYGVDAVMIHAATDVH 75 (167)
T ss_dssp CEEEEEEC-CCHHHHHTHHHHHTTS--TTEEEEE-ECSCHHHHHHHHHHTTCCCCCSSTT-GGGGGCCSEEEECSCGGGH
T ss_pred CeEEEEEc-CCHHHHHHHHHHHHhC--CCcEEEE-EECCHHHHHHHHHhcccccccccHH-Hhcccccceeccccccccc
Confidence 37999999 5888866 67778766 8888864 34321 11111110 1011112222 112 368999999999999
Q ss_pred hhhHHHHHhCCCEEE
Q 023678 115 KKFGPIAVEKGSIVV 129 (279)
Q Consensus 115 ~~~~~~~~~aG~~VI 129 (279)
.+++.+++++|..|+
T Consensus 76 ~~~~~~al~~gk~V~ 90 (167)
T d1xeaa1 76 STLAAFFLHLGIPTF 90 (167)
T ss_dssp HHHHHHHHHTTCCEE
T ss_pred ccccccccccccccc
Confidence 999999999999876
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=7.8e-05 Score=65.15 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=54.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--ee--eCCceeEEeecC--ccCCCCCcEEEecCCC-c
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LS--FQDKAYTVEELT--EDSFDGVDIALFSAGG-S 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~--~~~~~~~v~~~d--~~~~~~~DvVf~a~g~-~ 112 (279)
.||.|.||||++|+.|++.|.++++ ++..+. +.+.+.. +. .....+++.+.+ ...+.++|+||.++.. .
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~---~V~~~d-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa~~~ 77 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGH---EVTVVD-NFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPAS 77 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE-CCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC---EEEEEe-CCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcccCC
Confidence 6899999999999999999988765 444442 2222211 11 112234554433 2334589999976542 1
Q ss_pred --h---------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 113 --I---------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 113 --~---------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
. +..+++.+.+.|+++|=+|+..
T Consensus 78 ~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~ 117 (312)
T d2b69a1 78 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE 117 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred chhHHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChh
Confidence 1 1233444556788877666653
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.0002 Score=62.66 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=54.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ecC-cc-----CCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELT-ED-----SFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d-~~-----~~~~~DvVf~a~g~ 111 (279)
|||.|.||||++|+.|++.|.+++| .+++.+. +.+.+.........+.+. |+. .. ...++|+||.++..
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~--~~V~~ld-~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~ 77 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH--YEVYGLD-IGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI 77 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT--CEEEEEE-SCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--CEEEEEe-CCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence 6899999999999999999988753 4566663 222111101111223333 332 11 12479999998764
Q ss_pred ch------------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 112 SI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 112 ~~------------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
.. +..++..+.+.+++.+=.|+..
T Consensus 78 ~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~ 119 (342)
T d2blla1 78 ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSE 119 (342)
T ss_dssp CCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred ccccccccCCcccccccccccccccccccccccccccccccc
Confidence 32 2344555677788766555543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.49 E-value=6.7e-05 Score=59.94 Aligned_cols=93 Identities=14% Similarity=0.101 Sum_probs=57.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCcee--eeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL--SFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~--~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
|.||+||| .|.+|..|.+.|.+.+ +..++..+ +++...... .....+....+.+.....++|+||+|++.....+
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g-~~~~I~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~ 77 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSG-FKGKIYGY-DINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFRE 77 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTT-CCSEEEEE-CSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHH
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcC-CCeEEEEE-ECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhh
Confidence 34799999 6999999999998775 34565555 332111100 0011111222222222347899999999887766
Q ss_pred hHHHH---HhCCCEEEEcCCC
Q 023678 117 FGPIA---VEKGSIVVDNSSA 134 (279)
Q Consensus 117 ~~~~~---~~aG~~VIDlS~~ 134 (279)
....+ +..++.|+|.++.
T Consensus 78 vl~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp HHHHHHHHSCTTCEEEECCSC
T ss_pred hhhhhhccccccccccccccc
Confidence 66554 4578899999875
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.43 E-value=3.4e-05 Score=62.69 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=42.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CCceeEEeecC-c----cCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELT-E----DSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~~~~~v~~~d-~----~~~~~~DvVf~a~g~ 111 (279)
+|.+|.|.||||++|+.+++.|.+++|. +.+..+ +|+. .+.... ........+.. . +.+.++|.||.+.+.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~-v~v~~~-~R~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~ 78 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKGL-VRSA-QGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA 78 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTT-CEEEEE-ESCH-HHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCc-EEEEEE-cCCH-HHHHhccCCcEEEEeeeccccccccccccceeeEEEEee
Confidence 4689999999999999999999988753 344444 2321 111000 11122222322 1 224688999888653
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.39 E-value=0.00047 Score=53.96 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=56.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.+.||+|||+.|.+|+.|.+.|.+.+| ++..+ .++... .+.....++|+++.|++.....+.
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~---~V~~~-d~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~v 69 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGY---PISIL-DREDWA--------------VAESILANADVVIVSVPINLTLET 69 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTC---CEEEE-CTTCGG--------------GHHHHHTTCSEEEECSCGGGHHHH
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCC---CcEec-cccccc--------------ccchhhhhccccccccchhhheee
Confidence 367999999999999999999998765 33333 222100 001223578999999998887777
Q ss_pred HHHHH---hCCCEEEEcCCC
Q 023678 118 GPIAV---EKGSIVVDNSSA 134 (279)
Q Consensus 118 ~~~~~---~aG~~VIDlS~~ 134 (279)
..... ..|..|||.++-
T Consensus 70 ~~~~~~~~~~~~iiiD~~Sv 89 (152)
T d2pv7a2 70 IERLKPYLTENMLLADLTSV 89 (152)
T ss_dssp HHHHGGGCCTTSEEEECCSC
T ss_pred eecccccccCCceEEEeccc
Confidence 76664 478899999874
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.28 E-value=0.0003 Score=54.33 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=66.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceeeeCCceeEEeecCc-c--CCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSFQDKAYTVEELTE-D--SFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~~~~~~~~v~~~d~-~--~~~~~DvVf~a~g~~~ 113 (279)
.+||+|+| +|..|+.|++.+..+ ..++++.+.+.. ..|+.+. + +.|...+. + .-...++++.|++...
T Consensus 3 ~~~v~I~G-aG~~G~~l~~~l~~~--~~~~iv~fiDdd~~k~G~~I~--G--i~V~~~~~l~~~~~~~i~iai~~i~~~~ 75 (126)
T d2dt5a2 3 KWGLCIVG-MGRLGSALADYPGFG--ESFELRGFFDVDPEKVGRPVR--G--GVIEHVDLLPQRVPGRIEIALLTVPREA 75 (126)
T ss_dssp CEEEEEEC-CSHHHHHHHHCSCCC--SSEEEEEEEESCTTTTTCEET--T--EEEEEGGGHHHHSTTTCCEEEECSCHHH
T ss_pred CceEEEEc-CCHHHHHHHHhHhhc--CCcEEEEEEeCchHhcCCEEC--C--EEEecHHHHHHHHhhcccEEEEeCCHHH
Confidence 47999999 599999999987665 788999887643 3354432 2 34444331 1 1246899999999999
Q ss_pred hhhhHHHHHhCCCEEEEcCCCCCCC
Q 023678 114 SKKFGPIAVEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 114 s~~~~~~~~~aG~~VIDlS~~~R~~ 138 (279)
.++....+.+.|.+-|-+=++.+++
T Consensus 76 ~~~I~d~l~~~gIk~I~~f~~~~l~ 100 (126)
T d2dt5a2 76 AQKAADLLVAAGIKGILNFAPVVLE 100 (126)
T ss_dssp HHHHHHHHHHHTCCEEEECSSSCCC
T ss_pred HHHHHHHHHHcCCCEEeecCceeec
Confidence 9999999999999855333445443
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.24 E-value=0.00026 Score=55.68 Aligned_cols=92 Identities=20% Similarity=0.198 Sum_probs=60.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeE--EeecCc-----cCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYT--VEELTE-----DSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~--v~~~d~-----~~~~~~DvVf~a~g~ 111 (279)
..||.|+|| |.+|+.+++.|.+++| ++.++.......+.+........ ..+.+. ..+...|+++.+++.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~---~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~ 77 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGI---KVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPY 77 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTC---EEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCG
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccc
Confidence 368999996 9999999999999865 55555322111122211111111 122211 123577999999999
Q ss_pred chhhhhHHHHHhCCCEEEEcCCC
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
.........+.+.++.++|++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
T d1e5qa1 78 TFHATVIKSAIRQKKHVVTTSYV 100 (182)
T ss_dssp GGHHHHHHHHHHHTCEEECSSCC
T ss_pred hhhhHHHHHHHhhccceeecccC
Confidence 88888888888999999998743
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.21 E-value=3.4e-05 Score=61.80 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=53.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH-
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG- 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~- 118 (279)
|||+||| .|..|+.+.+.|.+++| ++... .+. ..+.-.+......+.+...+...++|++|+|++.....+.+
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~---~V~~~-d~~-~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~ 74 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGY---SLVVS-DRN-PEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVA 74 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC---EEEEE-CSC-HHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCC---eEEEE-eCC-cchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHH
Confidence 6899999 79999999999998865 44433 332 11100010001112111112346799999999876543322
Q ss_pred ------HHHHhCCCEEEEcCCCC
Q 023678 119 ------PIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 119 ------~~~~~aG~~VIDlS~~~ 135 (279)
....+.|..|||.|...
T Consensus 75 ~~~~~~~~~~~~g~iiid~sT~~ 97 (161)
T d1vpda2 75 LGENGIIEGAKPGTVLIDMSSIA 97 (161)
T ss_dssp HSTTCHHHHCCTTCEEEECSCCC
T ss_pred hCCcchhhccCCCCEEEECCCCC
Confidence 22345788999998753
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.19 E-value=0.00028 Score=56.00 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=44.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC----Cceee--e----CC--ceeEEeec-CccCCCCCcEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA----GKQLS--F----QD--KAYTVEEL-TEDSFDGVDIAL 106 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~----G~~~~--~----~~--~~~~v~~~-d~~~~~~~DvVf 106 (279)
|||+|+||+|.||+.+.-.|..+++ ..+++++...... |.... . .. ..+.+... +.+++.++|+|+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVV 79 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVI 79 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCc-ccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEE
Confidence 6899999999999999999988832 2366666433221 11111 0 11 12333322 345678899999
Q ss_pred ecCCC
Q 023678 107 FSAGG 111 (279)
Q Consensus 107 ~a~g~ 111 (279)
.+.|.
T Consensus 80 itAG~ 84 (145)
T d1hyea1 80 ITSGV 84 (145)
T ss_dssp ECCSC
T ss_pred Eeccc
Confidence 98774
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00043 Score=50.28 Aligned_cols=87 Identities=15% Similarity=0.256 Sum_probs=58.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..||+|+|. |..|+.+.+.|.+++.. +.+.-.+... ............+...+...+.++|.|+...|-....+.
T Consensus 5 ~K~v~ViGl-G~sG~s~a~~L~~~g~~---v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi~~~~~~ 80 (93)
T d2jfga1 5 GKNVVIIGL-GLTGLSCVDFFLARGVT---PRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPS 80 (93)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHTTCC---CEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTSCTTSHH
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCCE---EEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCCCCCCHH
Confidence 358999995 99999999999998643 3334332221 111111122233333333445688999999998888899
Q ss_pred HHHHHhCCCEEE
Q 023678 118 GPIAVEKGSIVV 129 (279)
Q Consensus 118 ~~~~~~aG~~VI 129 (279)
...|.++|+.||
T Consensus 81 ~~~a~~~gi~ii 92 (93)
T d2jfga1 81 LSAAADAGIEIV 92 (93)
T ss_dssp HHHHHHTTCEEE
T ss_pred HHHHHHcCCCeE
Confidence 999999999987
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=97.08 E-value=0.00052 Score=54.85 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=59.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecCCCCceee----e--------------------CCceeEEe-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLS----F--------------------QDKAYTVE- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~s~G~~~~----~--------------------~~~~~~v~- 92 (279)
+.+|+|+|+||-+|...++.+.++ | .++++.++..+...+... | ....+.+.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~--~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~ 79 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERN--LDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAA 79 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT--GGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcC--CCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhccccccc
Confidence 468999999999999999999887 5 589999977665332111 1 00112221
Q ss_pred ecC---ccCCCCCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 93 ELT---EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 93 ~~d---~~~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
..+ .....++|+|+.|......-+..-.++++|..|-
T Consensus 80 g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~ia 119 (150)
T d1r0ka2 80 GADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVA 119 (150)
T ss_dssp SHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEE
T ss_pred CccchheecccccceeeeecCchhHHHHHHHHHhcCCEEE
Confidence 111 0012468999999888777777778888887754
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.08 E-value=0.00049 Score=55.58 Aligned_cols=90 Identities=23% Similarity=0.212 Sum_probs=55.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCceeeeCCc----------ee---EEeecC-------
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQDK----------AY---TVEELT------- 95 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~~~~~~~~----------~~---~v~~~d------- 95 (279)
+++++|+|+| .|-||+.++++|.++. .-..++..++..+ +..+...+. .. .....+
T Consensus 2 ~k~i~I~l~G-~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T d1ebfa1 2 TKVVNVAVIG-AGVVGSAFLDQLLAMKSTITYNLVLLAEAE--RSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAH 78 (168)
T ss_dssp CSEEEEEEEC-CSHHHHHHHHHHHHCCCSSEEEEEEEECSS--BEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHH
T ss_pred CCEEEEEEEe-CCHHHHHHHHHHHHhHHHhhhheEEEEEee--eeeecccccchHhhhhhhhhhhhcccccccHHHHHHH
Confidence 4578999999 8999999999987652 2234544444321 111110000 00 000000
Q ss_pred ccCCCCCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 96 EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 96 ~~~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
.......|+++.|++.....++..+++++|+.||
T Consensus 79 ~~~~~~~~vivd~t~~~~~~~~~~~aL~~G~hVV 112 (168)
T d1ebfa1 79 LKTSPKPVILVDNTSSAYIAGFYTKFVENGISIA 112 (168)
T ss_dssp HTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEE
T ss_pred hccCCCceEEEEecCChHHHHHHHHHHHcCCeEE
Confidence 0112356899999998888888889999999999
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.08 E-value=0.00011 Score=58.04 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=52.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
|||++|| .|..|+.+++.|.+++ ..++... +|+ ..+ .+... ..+.+.+ +.++..++|+||+|+.+....+.
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~--~~~i~v~-~r~-~~~~~~l~~~-~~~~~~~-~~~~v~~~Div~lavkP~~~~~v 73 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQG--GYRIYIA-NRG-AEKRERLEKE-LGVETSA-TLPELHSDDVLILAVKPQDMEAA 73 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHC--SCEEEEE-CSS-HHHHHHHHHH-TCCEEES-SCCCCCTTSEEEECSCHHHHHHH
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCC--CCcEEEE-eCC-hhHHHHhhhh-ccccccc-ccccccccceEEEecCHHHHHHh
Confidence 6899999 5999999999877664 2354433 332 221 11111 1123332 23445679999999987655555
Q ss_pred HHHHHhCCCEEEEcCCC
Q 023678 118 GPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~ 134 (279)
.+.+...+..||+..+.
T Consensus 74 ~~~l~~~~~~viS~~ag 90 (152)
T d1yqga2 74 CKNIRTNGALVLSVAAG 90 (152)
T ss_dssp HTTCCCTTCEEEECCTT
T ss_pred HHHHhhcccEEeecccC
Confidence 54444456667766554
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.07 E-value=0.00011 Score=58.54 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=44.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC----CceEEEEEeecCCCCceee---------eCC-ceeEEeecCccCCCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRSAGKQLS---------FQD-KAYTVEELTEDSFDGVD 103 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~----p~~~l~~l~s~~s~G~~~~---------~~~-~~~~v~~~d~~~~~~~D 103 (279)
+.+||+|+||+|.||..++-.|.+.+. ...+++.+...+..++... +.. ....+..-+.+++.++|
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 81 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence 358999999999999999988875421 3456666644333222111 011 11222222234577889
Q ss_pred EEEecCCC
Q 023678 104 IALFSAGG 111 (279)
Q Consensus 104 vVf~a~g~ 111 (279)
+|+++.|.
T Consensus 82 vVVitag~ 89 (154)
T d5mdha1 82 VAILVGSM 89 (154)
T ss_dssp EEEECCSC
T ss_pred EEEEeccc
Confidence 88888764
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.07 E-value=0.001 Score=49.78 Aligned_cols=91 Identities=16% Similarity=0.296 Sum_probs=60.1
Q ss_pred cceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-e-CCceeEEe--ecCccCCCC
Q 023678 26 PMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-F-QDKAYTVE--ELTEDSFDG 101 (279)
Q Consensus 26 ~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~-~~~~~~v~--~~d~~~~~~ 101 (279)
|+|-.++ ..||.|+| .|.+|..-++.|.+.+ .++.+++. ... ..+. . ....+.+. .++..++.+
T Consensus 5 Pi~l~l~------~k~vlVvG-~G~va~~ka~~ll~~g---a~v~v~~~-~~~-~~~~~~~~~~~i~~~~~~~~~~dl~~ 72 (113)
T d1pjqa1 5 PIFCQLR------DRDCLIVG-GGDVAERKARLLLEAG---ARLTVNAL-TFI-PQFTVWANEGMLTLVEGPFDETLLDS 72 (113)
T ss_dssp EEEECCB------TCEEEEEC-CSHHHHHHHHHHHHTT---BEEEEEES-SCC-HHHHHHHTTTSCEEEESSCCGGGGTT
T ss_pred ceEEEeC------CCEEEEEC-CCHHHHHHHHHHHHCC---CeEEEEec-cCC-hHHHHHHhcCCceeeccCCCHHHhCC
Confidence 5555444 57999999 6999999999999863 45555532 211 1111 1 11123332 345667889
Q ss_pred CcEEEecCCCc-hhhhhHHHHHhCCCEE
Q 023678 102 VDIALFSAGGS-ISKKFGPIAVEKGSIV 128 (279)
Q Consensus 102 ~DvVf~a~g~~-~s~~~~~~~~~aG~~V 128 (279)
+++|+.|++.. ..++....+.+.|+.|
T Consensus 73 ~~lv~~at~d~~~n~~i~~~a~~~~ilV 100 (113)
T d1pjqa1 73 CWLAIAATDDDTVNQRVSDAAESRRIFC 100 (113)
T ss_dssp CSEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred CcEEeecCCCHHHHHHHHHHHHHcCCEE
Confidence 99999998775 5577778888899875
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.06 E-value=9.2e-05 Score=59.26 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=54.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|.||++|| .|..|..+.+.|.+++| ++... .++ ..+.-.+............+....+|+++.|++...+.+.+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~---~v~~~-d~~-~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v 74 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGY---LLNVF-DLV-QSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGL 74 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTC---EEEEE-CSS-HHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHH
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCC---eEEEE-ECc-hhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHH
Confidence 46899999 89999999999999866 44443 332 11100000001111111123356789999999987654322
Q ss_pred -------HHHHhCCCEEEEcCCCC
Q 023678 119 -------PIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 119 -------~~~~~aG~~VIDlS~~~ 135 (279)
...+..|..|||.|...
T Consensus 75 ~~~~~~~~~~l~~g~iiid~st~~ 98 (162)
T d3cuma2 75 YLDDDGLLAHIAPGTLVLECSTIA 98 (162)
T ss_dssp HHSTTCHHHHSCTTCEEEECSCCC
T ss_pred HhccccccccCCCCCEEEECCCCC
Confidence 22345688899988753
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.05 E-value=0.00073 Score=52.43 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=61.7
Q ss_pred CCEEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCC-CCCcEEEecCCCch
Q 023678 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSF-DGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~-~~~DvVf~a~g~~~ 113 (279)
..+||||||| |..|..+++.|.++ + ..++..+.-+. +.+ .+ ... .++ .++ ..+|+|+.++++..
T Consensus 8 PksIAVVGaS~~~~~~g~~v~~~L~~~-~-~g~v~pVnP~~---~~i--~G--~~~y~sl--~dlp~~vDlvvi~vp~~~ 76 (129)
T d2csua1 8 PKGIAVIGASNDPKKLGYEVFKNLKEY-K-KGKVYPVNIKE---EEV--QG--VKAYKSV--KDIPDEIDLAIIVVPKRF 76 (129)
T ss_dssp CSEEEEETCCSCTTSHHHHHHHHHTTC-C-SSEEEEECSSC---SEE--TT--EECBSST--TSCSSCCSEEEECSCHHH
T ss_pred CCeEEEEccCCCCCCcHHHHHHHHHHc-C-CCcEEEeccCc---ccc--CC--eEeecch--hhcCCCCceEEEecChHH
Confidence 3589999998 99999999998764 2 45777774221 111 11 111 122 223 46899999999999
Q ss_pred hhhhHHHHHhCCCE-EEEcCCCCC
Q 023678 114 SKKFGPIAVEKGSI-VVDNSSAFR 136 (279)
Q Consensus 114 s~~~~~~~~~aG~~-VIDlS~~~R 136 (279)
..+..+++.+.|++ ++=+|+-|.
T Consensus 77 ~~~~~~~~~~~g~~~~vi~s~Gf~ 100 (129)
T d2csua1 77 VKDTLIQCGEKGVKGVVIITAGFG 100 (129)
T ss_dssp HHHHHHHHHHHTCCEEEECCCSST
T ss_pred hHHHHHHHHHcCCCEEEEeccccc
Confidence 99999999999996 455788774
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.93 E-value=0.00016 Score=58.14 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=55.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCC-ceeEEeecC--ccCCCCCcEEEecCCCc--
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD-KAYTVEELT--EDSFDGVDIALFSAGGS-- 112 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~-~~~~v~~~d--~~~~~~~DvVf~a~g~~-- 112 (279)
+..+|.|+|| |-+|+.+++.|..++ .-++. +..| +..+...+.. ....+..++ .+.+..+|+||+|++..
T Consensus 23 ~~~~ilviGa-G~~g~~v~~~L~~~g--~~~i~-v~nR-t~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~~ 97 (159)
T d1gpja2 23 HDKTVLVVGA-GEMGKTVAKSLVDRG--VRAVL-VANR-TYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHP 97 (159)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHC--CSEEE-EECS-SHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSC
T ss_pred ccCeEEEECC-CHHHHHHHHHHHhcC--CcEEE-EEcC-cHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCCc
Confidence 3579999996 999999999998873 22333 4343 2211111100 012233332 12345899999999876
Q ss_pred -hhhhhHHHHHh-----CCCEEEEcCCC
Q 023678 113 -ISKKFGPIAVE-----KGSIVVDNSSA 134 (279)
Q Consensus 113 -~s~~~~~~~~~-----aG~~VIDlS~~ 134 (279)
..++..+...+ ....+||++-+
T Consensus 98 ii~~~~i~~~~~~r~~~~~~~iiDlavP 125 (159)
T d1gpja2 98 VIHVDDVREALRKRDRRSPILIIDIANP 125 (159)
T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred cccHhhhHHHHHhcccCCCeEEEeecCC
Confidence 55666665543 23479999754
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=96.93 E-value=4.5e-05 Score=60.02 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=50.7
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHH
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~ 119 (279)
|++|| +|..|+.|++.|.+. ++ +..+.+|. ..+ .+...+.. ...+ ..+..+.+|+||+|++.....+.+.
T Consensus 2 IgfIG-~G~mg~~l~~~L~~~-~~---~~~v~~R~-~~~~~~l~~~~~~-~~~~-~~~~~~~~DiVil~v~d~~i~~v~~ 73 (153)
T d2i76a2 2 LNFVG-TGTLTRFFLECLKDR-YE---IGYILSRS-IDRARNLAEVYGG-KAAT-LEKHPELNGVVFVIVPDRYIKTVAN 73 (153)
T ss_dssp CEEES-CCHHHHHHHHTTC--------CCCEECSS-HHHHHHHHHHTCC-CCCS-SCCCCC---CEEECSCTTTHHHHHT
T ss_pred EEEEe-CcHHHHHHHHHHHhC-CC---EEEEEeCC-hhhhcchhhcccc-cccc-hhhhhccCcEEEEeccchhhhHHHh
Confidence 68999 799999999988653 22 22244442 222 11111100 1111 1234567899999999988877777
Q ss_pred HHHhCCCEEEEcCCCC
Q 023678 120 IAVEKGSIVVDNSSAF 135 (279)
Q Consensus 120 ~~~~aG~~VIDlS~~~ 135 (279)
.+...|..|||.|+..
T Consensus 74 ~l~~~~~ivi~~s~~~ 89 (153)
T d2i76a2 74 HLNLGDAVLVHCSGFL 89 (153)
T ss_dssp TTCCSSCCEEECCSSS
T ss_pred hhcccceeeeecccch
Confidence 6656788899998865
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.90 E-value=0.00025 Score=56.47 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD 63 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~ 63 (279)
.+||+|+||+|.||+.+.-.|...+
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~ 28 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGE 28 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcc
Confidence 4799999999999999999998763
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.0013 Score=52.53 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=59.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecCCCCceee----eCC----------------------ceeEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLS----FQD----------------------KAYTV 91 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~s~G~~~~----~~~----------------------~~~~v 91 (279)
|.||+|+|+||-+|...++.+.++ | .++++.++..++...... |.- ..+.+
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~--~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~ 78 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHN--PEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEV 78 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC--TTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhC--CCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhcccccc
Confidence 458999999999999999999887 5 589998876554322111 100 01111
Q ss_pred e-ecC----ccCCCCCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 92 E-ELT----EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 92 ~-~~d----~~~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
. ..+ .....++|+|+.|......-+..-.+++.|..|-
T Consensus 79 ~~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~ia 121 (151)
T d1q0qa2 79 LSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTIL 121 (151)
T ss_dssp EESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEE
T ss_pred ccChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEE
Confidence 1 100 0123478999999888877777778888988753
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.81 E-value=0.00015 Score=59.83 Aligned_cols=93 Identities=20% Similarity=0.269 Sum_probs=58.0
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--------Cceeee-CC----ceeEEeecC-ccCCCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------GKQLSF-QD----KAYTVEELT-EDSFDGV 102 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--------G~~~~~-~~----~~~~v~~~d-~~~~~~~ 102 (279)
|.|.||+|+| +|..|..|...|.+.+| ++.+. +|+.. +....+ .+ .++.+.. + .+.+.++
T Consensus 5 ~~m~KI~ViG-aG~wGtAlA~~La~~g~---~V~l~-~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~-~l~~a~~~a 78 (189)
T d1n1ea2 5 LYLNKAVVFG-SGAFGTALAMVLSKKCR---EVCVW-HMNEEEVRLVNEKRENVLFLKGVQLASNITFTS-DVEKAYNGA 78 (189)
T ss_dssp CCEEEEEEEC-CSHHHHHHHHHHHTTEE---EEEEE-CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEES-CHHHHHTTC
T ss_pred ceeceEEEEC-CCHHHHHHHHHHHHcCC---eEEEE-EecHHHHHHHhhcccccccccccccccccccch-hhhhccCCC
Confidence 4456899999 69999999999987644 43333 33210 110000 11 1233332 2 2335789
Q ss_pred cEEEecCCCchhhhhHHHH--------HhCCCEEEEcCCCC
Q 023678 103 DIALFSAGGSISKKFGPIA--------VEKGSIVVDNSSAF 135 (279)
Q Consensus 103 DvVf~a~g~~~s~~~~~~~--------~~aG~~VIDlS~~~ 135 (279)
|++|+|+|+...++...++ ...+..+|.++--+
T Consensus 79 d~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGi 119 (189)
T d1n1ea2 79 EIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 119 (189)
T ss_dssp SCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred CEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCC
Confidence 9999999988777766543 45677788777665
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.81 E-value=0.0028 Score=54.74 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=43.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCce---EEEEEeecCCCCceee--e--CCceeEEeecCc-------cCCCCCcEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR---SIKMLASKRSAGKQLS--F--QDKAYTVEELTE-------DSFDGVDIA 105 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~---~l~~l~s~~s~G~~~~--~--~~~~~~v~~~d~-------~~~~~~DvV 105 (279)
|||.|.||||++|+.|++.|.+++|... ++..+......+.... . ....+.+...|. ....+.|+|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v 80 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence 6899999999999999999998877654 3444432222222111 0 122344443331 124577888
Q ss_pred EecCCC
Q 023678 106 LFSAGG 111 (279)
Q Consensus 106 f~a~g~ 111 (279)
+.++..
T Consensus 81 i~~a~~ 86 (322)
T d1r6da_ 81 VHFAAE 86 (322)
T ss_dssp EECCSC
T ss_pred Eeeccc
Confidence 877643
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.77 E-value=0.00041 Score=56.68 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=43.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCC----CCceEEEEEeecCCCCc----eeee-----CC-ceeEEeecCccCCCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRD----FPYRSIKMLASKRSAGK----QLSF-----QD-KAYTVEELTEDSFDGVD 103 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~----~p~~~l~~l~s~~s~G~----~~~~-----~~-~~~~v~~~d~~~~~~~D 103 (279)
+..||+|+||+|.||..|+-+|.+.+ ...+++.++...+..+. .... .. ....+..-+.+++.++|
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD 102 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 102 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence 35799999999999999998887642 12346666643332221 1100 11 11222221234578889
Q ss_pred EEEecCCC
Q 023678 104 IALFSAGG 111 (279)
Q Consensus 104 vVf~a~g~ 111 (279)
+|+...|.
T Consensus 103 vVvi~ag~ 110 (175)
T d7mdha1 103 WALLIGAK 110 (175)
T ss_dssp EEEECCCC
T ss_pred eEEEeecc
Confidence 88888754
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=96.74 E-value=0.0004 Score=58.82 Aligned_cols=92 Identities=20% Similarity=0.267 Sum_probs=52.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-------eCCceeEEe--ecC-c----cCCCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-------FQDKAYTVE--ELT-E----DSFDGVD 103 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-------~~~~~~~v~--~~d-~----~~~~~~D 103 (279)
++.||.|+||||++|+.|++.|.++||. ++++ +|+....... .....+.+. ++. . ..+.+.|
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~---V~~~-~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHP---TYVL-FRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCC---EEEE-CCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCE---EEEE-ECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence 4578999999999999999999998764 4445 4433322111 011123333 222 1 1246889
Q ss_pred EEEecCCCchh-------hhhHHHHHhCC-CEEEEcCC
Q 023678 104 IALFSAGGSIS-------KKFGPIAVEKG-SIVVDNSS 133 (279)
Q Consensus 104 vVf~a~g~~~s-------~~~~~~~~~aG-~~VIDlS~ 133 (279)
.+|.+.+.... ......+.+++ .++|=.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ss 115 (312)
T d1qyda_ 78 VVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSE 115 (312)
T ss_dssp EEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEECSC
T ss_pred hhhhhhhhcccccchhhhhHHHHHHHHhcCCcEEEEee
Confidence 99988764321 23334445554 45554443
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.70 E-value=0.00063 Score=53.86 Aligned_cols=71 Identities=17% Similarity=0.315 Sum_probs=43.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceeee-----CCceeEEeecCccCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSF-----QDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~~-----~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
.+||+|||| |+||..+...|..++. ..+++++.-.+ ..|..... ......+..-|.+++.++|+|+.++|.
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~-~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~~~adivvitag~ 82 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGI-AEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGA 82 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCC-CcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHhccccEEEEeccc
Confidence 479999995 9999999999888742 23666663111 11111100 011122333345667899999998775
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.69 E-value=0.00033 Score=55.48 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=26.0
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
||+|+||+|.||+.+.-+|..++. .-+++++.
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiD 33 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYD 33 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCc-cceEEEEe
Confidence 899999999999999999988732 24666664
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.64 E-value=0.00061 Score=54.34 Aligned_cols=73 Identities=23% Similarity=0.402 Sum_probs=42.3
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeee------CCceeEEe-ecC-ccCCCCCcEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF------QDKAYTVE-ELT-EDSFDGVDIAL 106 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~------~~~~~~v~-~~d-~~~~~~~DvVf 106 (279)
+++.||+|||| |.||+.+.-.|... +..+++++.-++. .|..... ......+. ..+ .+++.++|+|+
T Consensus 5 ~k~~KI~IIGa-G~VG~~lA~~l~~~--~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVv 81 (154)
T d1pzga1 5 QRRKKVAMIGS-GMIGGTMGYLCALR--ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 81 (154)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHH--TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhC--CCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEE
Confidence 34689999997 99999998888777 4457776632221 1111110 11111121 222 23457889998
Q ss_pred ecCCCc
Q 023678 107 FSAGGS 112 (279)
Q Consensus 107 ~a~g~~ 112 (279)
.+.+..
T Consensus 82 itag~~ 87 (154)
T d1pzga1 82 VTAGLT 87 (154)
T ss_dssp ECCSCS
T ss_pred Eecccc
Confidence 887643
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.63 E-value=0.0028 Score=50.11 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=54.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--------CCceeee-CCceeEEe----ecC-ccCCCCCcEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--------AGKQLSF-QDKAYTVE----ELT-EDSFDGVDIA 105 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--------~G~~~~~-~~~~~~v~----~~d-~~~~~~~DvV 105 (279)
+||+|+|| |.+|..+...|.++|| ++..+ .++. .|..... .+...... ..+ .+.+.++|++
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~---~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~i 76 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQ---SVLAW-DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVI 76 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEE
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCC---EEEEE-ECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEE
Confidence 68999995 9999999999999876 44444 3321 1111111 11111111 112 2335789999
Q ss_pred EecCCCchhhhhHHHHH---hCCCEEEEcCC
Q 023678 106 LFSAGGSISKKFGPIAV---EKGSIVVDNSS 133 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~~---~aG~~VIDlS~ 133 (279)
|+|+++......++++. ..+..||..++
T Consensus 77 ii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g 107 (184)
T d1bg6a2 77 LIVVPAIHHASIAANIASYISEGQLIILNPG 107 (184)
T ss_dssp EECSCGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred EEEEchhHHHHHHHHhhhccCCCCEEEEeCC
Confidence 99999988777766654 34666665443
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=96.63 E-value=0.0005 Score=58.13 Aligned_cols=89 Identities=18% Similarity=0.131 Sum_probs=57.1
Q ss_pred CCCCEEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee--eCCceeE-EeecCc-cCCCCCcEEEec
Q 023678 37 ESAPSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS--FQDKAYT-VEELTE-DSFDGVDIALFS 108 (279)
Q Consensus 37 ~~~~kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~--~~~~~~~-v~~~d~-~~~~~~DvVf~a 108 (279)
.+++||||||+. |++++.-+..+.+. .|.++++++++++... +... +...... +.+++. ..-.++|+|+.|
T Consensus 14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~-~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~ 92 (237)
T d2nvwa1 14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQL-SSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVS 92 (237)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHT-TTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEEC
T ss_pred CCCeEEEEEecCccccHHHHHHHHHHHhc-CCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeecc
Confidence 346899999974 56888777666542 1789999998653211 1110 1111222 222221 011478999999
Q ss_pred CCCchhhhhHHHHHhCCC
Q 023678 109 AGGSISKKFGPIAVEKGS 126 (279)
Q Consensus 109 ~g~~~s~~~~~~~~~aG~ 126 (279)
+++....+++..++++|.
T Consensus 93 tp~~~h~~~~~~al~aG~ 110 (237)
T d2nvwa1 93 VKVPEHYEVVKNILEHSS 110 (237)
T ss_dssp SCHHHHHHHHHHHHHHSS
T ss_pred CCCcchhhHHHHHHHhcc
Confidence 999999999999999885
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=96.59 E-value=0.00056 Score=57.18 Aligned_cols=92 Identities=17% Similarity=0.259 Sum_probs=51.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee--------eCCceeEEe--ecC-c----cCCCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--------FQDKAYTVE--ELT-E----DSFDGV 102 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~--------~~~~~~~v~--~~d-~----~~~~~~ 102 (279)
+++||.|+||||++|+.|++.|.++|| ++.++. |........ .....+.+. ++. . ..+.++
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~---~V~~l~-R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGH---PTFLLV-RESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV 77 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC---CEEEEC-CCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEE-CCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc
Confidence 357899999999999999999998876 455553 432221110 011123333 222 1 123578
Q ss_pred cEEEecCCCchh---hhhHHHHHhCCCE-EEEcCC
Q 023678 103 DIALFSAGGSIS---KKFGPIAVEKGSI-VVDNSS 133 (279)
Q Consensus 103 DvVf~a~g~~~s---~~~~~~~~~aG~~-VIDlS~ 133 (279)
|.|+.+.+.... ......+..++++ ++-.|+
T Consensus 78 ~~vi~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s~ 112 (307)
T d1qyca_ 78 DVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSE 112 (307)
T ss_dssp SEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECSC
T ss_pred eeeeecccccccchhhHHHHHHHHhccccceeeec
Confidence 989888765432 3334444555553 333343
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.50 E-value=0.0055 Score=46.33 Aligned_cols=79 Identities=18% Similarity=0.276 Sum_probs=55.9
Q ss_pred CEEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC-CCCcEEEecCCCchhh
Q 023678 40 PSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISK 115 (279)
Q Consensus 40 ~kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s~ 115 (279)
.+|||+||+ |-.|..+++.|.+++| +++.+. ++ +..+ .+ ..+.. +..++ ...|+++++++.....
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~---~V~pVn-P~--~~~i--~G--~~~y~-sl~~lp~~~D~vvi~vp~~~~~ 70 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGF---EVLPVN-PN--YDEI--EG--LKCYR-SVRELPKDVDVIVFVVPPKVGL 70 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEEC-TT--CSEE--TT--EECBS-SGGGSCTTCCEEEECSCHHHHH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCC---EEEEEc-cc--cccc--cC--ccccc-cchhccccceEEEEEeCHHHHH
Confidence 379999998 7789999999999866 566663 22 1222 11 12211 12223 4679999999999999
Q ss_pred hhHHHHHhCCCEEE
Q 023678 116 KFGPIAVEKGSIVV 129 (279)
Q Consensus 116 ~~~~~~~~aG~~VI 129 (279)
+.++++.+.|++.+
T Consensus 71 ~~l~~~~~~g~k~v 84 (116)
T d1y81a1 71 QVAKEAVEAGFKKL 84 (116)
T ss_dssp HHHHHHHHTTCCEE
T ss_pred HHHHHHHhcCCceE
Confidence 99999999999744
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=96.50 E-value=0.00059 Score=57.26 Aligned_cols=30 Identities=17% Similarity=0.385 Sum_probs=25.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|||.|.||||++|+.|++.|.++|| +++.+
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~---~Vi~~ 31 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNV---EVIPT 31 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSE---EEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---EEEEe
Confidence 7899999999999999999988754 55444
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.47 E-value=0.00096 Score=52.64 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=43.4
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCce-EEEEEeecCC----CCceeee-----CCceeEEeecCccCCCCCcEEEecCC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRS----AGKQLSF-----QDKAYTVEELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~-~l~~l~s~~s----~G~~~~~-----~~~~~~v~~~d~~~~~~~DvVf~a~g 110 (279)
||+|+||+|.||+.+.-.|..+ +.. +++++.-.+. .|..+.. ......+..-+.+++.++|+|+.+.|
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~--~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG 79 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALR--DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAG 79 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCC
T ss_pred eEEEECCCCcHHHHHHHHHHhC--CCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEecc
Confidence 8999999999999999998887 343 5666531111 1221111 01123344444566788999998877
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 80 ~ 80 (142)
T d1o6za1 80 I 80 (142)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.46 E-value=0.0022 Score=50.06 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=42.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cceeee------CCceeEEe-ecCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSF------QDKAYTVE-ELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~~~~~------~~~~~~v~-~~d~~~~~~~DvVf~a~g 110 (279)
|||+|+|| |.||..+...|..++. ..+++++--.+.. +..... ......+. .-+.+++.++|+|+.+.|
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l-~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag 78 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQL-ARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-CceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEe
Confidence 69999996 9999999999887742 2366666322211 111110 11223333 233556789999999876
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 79 ~ 79 (142)
T d1guza1 79 L 79 (142)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.44 E-value=0.00021 Score=56.66 Aligned_cols=87 Identities=11% Similarity=0.210 Sum_probs=51.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecC-ccCCCCCcEEEecCCCchhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~ 116 (279)
|||++|| +|..|+.|++.|.+.++ ++.+. .| +..+ .+... ....+.. + .+..+++|+||+|+.+....+
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~---~i~v~-~r-~~~~~~~l~~~-~g~~~~~-~~~~~~~~~dvIilavkp~~~~~ 72 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPH---ELIIS-GS-SLERSKEIAEQ-LALPYAM-SHQDLIDQVDLVILGIKPQLFET 72 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSC---EEEEE-CS-SHHHHHHHHHH-HTCCBCS-SHHHHHHTCSEEEECSCGGGHHH
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCC---eEEEE-cC-hHHhHHhhccc-cceeeec-hhhhhhhccceeeeecchHhHHH
Confidence 6899999 79999999999987632 44333 32 2211 11100 0111111 1 123467999999998876666
Q ss_pred hHHHHHhCCCEEEEcCCCC
Q 023678 117 FGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~~~ 135 (279)
..+. +..+..||+..+..
T Consensus 73 vl~~-l~~~~~iis~~agi 90 (152)
T d2ahra2 73 VLKP-LHFKQPIISMAAGI 90 (152)
T ss_dssp HHTT-SCCCSCEEECCTTC
T ss_pred Hhhh-cccceeEecccccc
Confidence 5543 24566777766543
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.34 E-value=0.0021 Score=51.67 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=42.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceeee------CCceeEEeecCccCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSF------QDKAYTVEELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~~------~~~~~~v~~~d~~~~~~~DvVf~a~g 110 (279)
..||+|||+ |.||..+.-.|..+++ .-|++++.-.. ..|..+.. ......+..-+.+++.++|+|++++|
T Consensus 20 ~~KV~IIGa-G~VG~~~A~~l~~~~l-~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg 97 (160)
T d1i0za1 20 NNKITVVGV-GQVGMACAISILGKSL-ADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAG 97 (160)
T ss_dssp SSEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCS
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCC-CcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecC
Confidence 479999996 9999999999988742 23666663211 11211111 11122233334556788999988877
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 98 ~ 98 (160)
T d1i0za1 98 V 98 (160)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=96.32 E-value=0.0031 Score=55.78 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=22.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
|||.|.||||++|+.|++.|.+.+|
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~ 25 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQ 25 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC
Confidence 6899999999999999999988754
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0009 Score=52.94 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=24.4
Q ss_pred CEEEEECcCcHHHHHHHHHHH-cCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~-~~~~p~~~l~~l~ 73 (279)
|||+|+||+|.||..+.-+|. +++ -..+++++-
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~-~~~el~L~D 34 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLP-SGSELSLYD 34 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSC-TTCEEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-CCcEEEEec
Confidence 699999999999999987664 442 134666663
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.24 E-value=0.0027 Score=50.06 Aligned_cols=71 Identities=23% Similarity=0.411 Sum_probs=43.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceee------eCCceeEEeecCccCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLS------FQDKAYTVEELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~------~~~~~~~v~~~d~~~~~~~DvVf~a~g 110 (279)
..||+|||| |.||..+.-.|...+. ..+++++..... .|.... +......+..-+.+++.++|+|+.+.+
T Consensus 6 ~~KI~IiGa-G~vG~~~a~~l~~~~l-~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag 83 (148)
T d1ldna1 6 GARVVVIGA-GFVGASYVFALMNQGI-ADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG 83 (148)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred CCeEEEECc-CHHHHHHHHHHHhcCC-CceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence 479999997 9999999988877632 236666632211 121111 112233444434566788999998876
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 84 ~ 84 (148)
T d1ldna1 84 A 84 (148)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.24 E-value=0.0017 Score=50.81 Aligned_cols=70 Identities=20% Similarity=0.367 Sum_probs=42.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeee-----CCceeEEeecCccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF-----QDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~-----~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
|||+|||| |.||..+.-.|..++. ..+++++.-.+. .|..+.. ......+..-+.+++.++|+|+.+.|.
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l-~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 77 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV 77 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-CCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccc
Confidence 69999996 9999999988777643 336666632111 1111110 011223333345567899999999875
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.23 E-value=0.0025 Score=49.84 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=43.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeeeC------CceeEEe-ecCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSFQ------DKAYTVE-ELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~~------~~~~~v~-~~d~~~~~~~DvVf~a~g 110 (279)
.||+|||| |+||..+.-+|..+ +..+++++.-.+. .|...... .....+. .-+.+++.++|+|++++|
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~--~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag 78 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAK--ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH--TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhC--CcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeee
Confidence 59999996 99999999888877 4457666632221 11111110 1122233 233456789999999987
Q ss_pred Cc
Q 023678 111 GS 112 (279)
Q Consensus 111 ~~ 112 (279)
..
T Consensus 79 ~~ 80 (142)
T d1uxja1 79 AP 80 (142)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.22 E-value=0.0055 Score=47.87 Aligned_cols=82 Identities=12% Similarity=0.176 Sum_probs=57.8
Q ss_pred CCEEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC-CCCcEEEecCCCchh
Q 023678 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s 114 (279)
..+||||||+ +..|..+++.|.+++| +++.+.- +. ..+ .+ ..+.. +..++ ...|+|+++++....
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~---~v~pVnP-~~--~~i--~G--~~~~~-sl~dlp~~iD~v~i~vp~~~~ 87 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGY---DVYPVNP-KY--EEV--LG--RKCYP-SVLDIPDKIEVVDLFVKPKLT 87 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECT-TC--SEE--TT--EECBS-SGGGCSSCCSEEEECSCHHHH
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCC---EEEEECC-cc--ccc--CC--Ccccc-cccccCccceEEEEEeCHHHH
Confidence 3589999998 7899999999999866 5666642 21 111 11 11111 12233 468999999999999
Q ss_pred hhhHHHHHhCCCEEEEc
Q 023678 115 KKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 115 ~~~~~~~~~aG~~VIDl 131 (279)
.++++++.+.|+++|=+
T Consensus 88 ~~~~~e~~~~g~k~v~~ 104 (139)
T d2d59a1 88 MEYVEQAIKKGAKVVWF 104 (139)
T ss_dssp HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 99999999999975533
|
| >d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=96.21 E-value=0.0012 Score=53.32 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=32.2
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeeccccc
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGA 203 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGa 203 (279)
+|+|+|+++.++.|+++|+|+...++|+|++++.
T Consensus 1 SCTTN~laP~~kvl~~~fgI~~g~mtTvHa~t~~ 34 (162)
T d1obfo2 1 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNN 34 (162)
T ss_dssp CHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTT
T ss_pred CcHHHHHHHHHHHHHhhcCeeEEEEEEeeccccc
Confidence 6999999999999999999999999999999964
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=96.18 E-value=0.0019 Score=56.48 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=26.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
||||.|.||||++|+.|++.|.++++. +.++.+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~-v~v~~~ 34 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVL 34 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCC-eEEEEE
Confidence 689999999999999999999887643 444443
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.17 E-value=0.0038 Score=49.44 Aligned_cols=70 Identities=20% Similarity=0.374 Sum_probs=43.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeee------CCceeEEe-ecCccCCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF------QDKAYTVE-ELTEDSFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~------~~~~~~v~-~~d~~~~~~~DvVf~a~ 109 (279)
+.||+|||| |.||..+.-+|..+ +..+++++.-.+. .|..... ......+. .-+.+++.++|+|+.+.
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~--~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvita 79 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQK--NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTA 79 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhC--CCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEec
Confidence 369999996 99999999888887 4457776632221 1211111 11222332 22345678999999997
Q ss_pred CC
Q 023678 110 GG 111 (279)
Q Consensus 110 g~ 111 (279)
+.
T Consensus 80 g~ 81 (150)
T d1t2da1 80 GF 81 (150)
T ss_dssp SC
T ss_pred cc
Confidence 74
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0016 Score=56.80 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|||.|.||||++|+.|++.|.+++| +++.+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~---~V~~~ 30 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVIIL 30 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC---EEEEE
Confidence 6899999999999999999998864 44444
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=96.07 E-value=0.0023 Score=55.82 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=54.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCcee----eeCCceeEEeecC-cc-----CCCCCcEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL----SFQDKAYTVEELT-ED-----SFDGVDIALF 107 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~----~~~~~~~~v~~~d-~~-----~~~~~DvVf~ 107 (279)
++++|+|+||||++|+.|++.|.+++| +++++. |+..+... ...+.++...|+. .. .+.++|++|.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~---~V~~l~-R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~ 77 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH---HVRAQV-HSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 77 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC---CEEEEE-SCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC---eEEEEE-CCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEe
Confidence 357899999999999999999999866 455553 43222111 1122233333432 21 2468899988
Q ss_pred cCCCc------hhhhhHHHHHhCCC-EEEEcCC
Q 023678 108 SAGGS------ISKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 108 a~g~~------~s~~~~~~~~~aG~-~VIDlS~ 133 (279)
..+.. ..+.++..+.++|+ ++|=.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~aa~~agv~~~v~~Ss 110 (350)
T d1xgka_ 78 NTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSS 110 (350)
T ss_dssp CCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred ecccccchhhhhhhHHHHHHHHhCCCceEEEee
Confidence 76543 23455666667776 3333443
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.06 E-value=0.0034 Score=50.67 Aligned_cols=79 Identities=13% Similarity=0.215 Sum_probs=48.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-CC--------Cceee-eCC--ceeEEeec-C-ccCCCCCcEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SA--------GKQLS-FQD--KAYTVEEL-T-EDSFDGVDIA 105 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s~--------G~~~~-~~~--~~~~v~~~-d-~~~~~~~DvV 105 (279)
|||+|+| +|..|..|...|.+.+| ++.+. +|+ .. ++... +.. ....+... + .+.+.++|+|
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~---~V~l~-~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~I 75 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGN---EVRIW-GTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVV 75 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCC---EEEEE-CCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC---EEEEE-EecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchh
Confidence 7999999 59999999999987654 33333 332 10 10000 000 11122211 1 2335789999
Q ss_pred EecCCCchhhhhHHHHHh
Q 023678 106 LFSAGGSISKKFGPIAVE 123 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~~~ 123 (279)
|+|+++..-++...++..
T Consensus 76 i~avps~~~~~~~~~l~~ 93 (180)
T d1txga2 76 LLGVSTDGVLPVMSRILP 93 (180)
T ss_dssp EECSCGGGHHHHHHHHTT
T ss_pred hcccchhhhHHHHHhhcc
Confidence 999999888887777643
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0016 Score=55.80 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
++||.|.||||++|+.|++.|.++++
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~ 27 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGD 27 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcC
Confidence 35899999999999999999998843
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0022 Score=55.85 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY 66 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~ 66 (279)
.||.|.||||++|++|++.|.++++..
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V 29 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLP 29 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEE
Confidence 479999999999999999999886643
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=95.84 E-value=0.0084 Score=46.78 Aligned_cols=71 Identities=15% Similarity=0.290 Sum_probs=41.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceeeeCC-----ceeEEeecCccCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSFQD-----KAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~~~~-----~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
.||+|||| |.||..+.-.|..+++ .-|++++.-.. ..|+.+...+ ....+..-+.+++.++|+|+.+.|..
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l-~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~ 79 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQT-ANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN 79 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC-SSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccc
Confidence 58999997 9999999988887743 23666663222 1222221111 12223333455678899998887643
|
| >d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=95.80 E-value=0.0023 Score=51.64 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=31.7
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeeccccc
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGA 203 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGa 203 (279)
|+|+|+++.++.|+++|+|+...++|+|++++-
T Consensus 1 CTTNclaP~~kil~~~fgI~~g~~tTiH~~t~~ 33 (162)
T d2g82a2 1 CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTND 33 (162)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTT
T ss_pred ChhHhHHHHHHHHHhhcCeeEEEEEeeccccCc
Confidence 999999999999999999999999999999874
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.79 E-value=0.0036 Score=49.06 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=42.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceeee------CCceeEEe-ecCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSF------QDKAYTVE-ELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~~------~~~~~~v~-~~d~~~~~~~DvVf~a~g 110 (279)
|||+|||| |.||..+.-.|..++ -..|++++.-.+ ..|..+.. ......+. .-|.+++.++|+|+++.+
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag 78 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhcC-cCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecc
Confidence 79999996 999999998887663 234676663111 11221111 11122332 234567889999999987
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 79 ~ 79 (142)
T d1ojua1 79 L 79 (142)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=95.72 E-value=0.0021 Score=53.79 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRD 63 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~ 63 (279)
|||.|.||||++|+.|++.|.+++
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g 24 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVG 24 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 689999999999999999998764
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.68 E-value=0.0066 Score=48.50 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=41.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeee------CCceeEEeecCccCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF------QDKAYTVEELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~------~~~~~~v~~~d~~~~~~~DvVf~a~g 110 (279)
..||+|+|| |.||..+.-.|..+++ ..+++++.-... .|..+.. ......+..-+.+++.++|+|+.+.|
T Consensus 19 ~~KI~IIGa-G~VG~~~A~~l~~~~l-~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvitag 96 (159)
T d2ldxa1 19 RCKITVVGV-GDVGMACAISILLKGL-ADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAG 96 (159)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTS-CSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECCS
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEecc
Confidence 469999996 9999999999988732 236666631111 1111111 11122223334455678888888766
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 97 ~ 97 (159)
T d2ldxa1 97 A 97 (159)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.67 E-value=0.0032 Score=54.73 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=26.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++++|.|.||||++|+.|++.|.++|| ++..+
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~---~V~~~ 46 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQ---KVVGL 46 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC---EEEEE
Confidence 456899999999999999999999866 44444
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=95.66 E-value=0.0044 Score=48.76 Aligned_cols=71 Identities=11% Similarity=0.203 Sum_probs=42.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceee------eCCceeEEeecCccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLS------FQDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~------~~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
.||+|||| |+||..+.-.|..++. ..+++++.-... .|.... +......+..-+.+++.++|+|+.+.|.
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~-~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~ 79 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGV-ADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGN 79 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCC-CceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccc
Confidence 58999995 9999999988776632 346666531111 111111 1112233333345678899999998875
Q ss_pred c
Q 023678 112 S 112 (279)
Q Consensus 112 ~ 112 (279)
.
T Consensus 80 ~ 80 (146)
T d1hyha1 80 I 80 (146)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.65 E-value=0.0035 Score=55.59 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=25.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|||.|.||||++|+.|++.|.+.|| +++.+
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~---~V~~i 31 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNY---EVCIV 31 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC---EEEEE
Confidence 7999999999999999999998865 44444
|
| >d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=95.58 E-value=0.0027 Score=51.26 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=31.6
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeeccccc
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGA 203 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGa 203 (279)
|+|+|+++.++.|++.|+|+...++|+|++++.
T Consensus 1 CTTNclaP~~kvl~~~fgI~~g~mTTiHayT~~ 33 (164)
T d1u8fo2 1 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITAT 33 (164)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTT
T ss_pred ChhHHHHHHHHHHHhhcCeeEEEEEeeecccCc
Confidence 999999999999999999999999999999874
|
| >d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=95.56 E-value=0.0037 Score=50.71 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=31.3
Q ss_pred CChHHHHHHhhhch-hhhcCccEEEEEEeeccccc
Q 023678 170 NCSTIICLMAATPL-HRRAKVTRMVVSTYQAASGA 203 (279)
Q Consensus 170 gC~tt~l~laL~PL-~~~~~i~~v~vtt~q~vSGa 203 (279)
+|+|+++++.++.| ++.|+|+...++|+|++++.
T Consensus 1 SCTTNclaP~~kvL~~~~fgI~~g~mtTvHa~T~~ 35 (169)
T d1k3ta2 1 SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTAT 35 (169)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCTT
T ss_pred CcHHHHHHHHHHHhhccccceeEEEEEEeccccCC
Confidence 69999999999997 78899999999999999874
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=95.53 E-value=0.0048 Score=54.51 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=25.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.|||.|.|||||+|+.|++.|+++ ...+++.+
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~--~~~~V~~~ 33 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRD--TNHSVVIV 33 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH--CCCEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHh--CCCEEEEE
Confidence 479999999999999999988754 33456555
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.51 E-value=0.0048 Score=52.72 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=25.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.||.|.||||++|+.|++.|.++|| ++..+.
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~---~V~~~~ 31 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY---RVHGLV 31 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEE
Confidence 4799999999999999999998865 455553
|
| >d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=95.48 E-value=0.0031 Score=50.87 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=31.6
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeeccccc
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGA 203 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGa 203 (279)
|+|+|+++.++.|+++|+|++..++|+|++++-
T Consensus 1 CTTNclaP~~kvl~~~fgI~~g~mTTvHa~T~~ 33 (163)
T d3cmco2 1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTND 33 (163)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTT
T ss_pred ChhHHHHHHHHHHHhhcCeeEEEEEeeccccCc
Confidence 999999999999999999999999999999874
|
| >d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=95.41 E-value=0.0034 Score=50.64 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=31.5
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeeccccc
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGA 203 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGa 203 (279)
|+|+++++.++.|+++|+|+...++|+|++++.
T Consensus 1 CTTN~laP~~kvl~~~fgI~~g~mtTvHa~T~~ 33 (163)
T d1rm4a2 1 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD 33 (163)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTT
T ss_pred ChhHhHHHHHHHHHHhCCeeEEEEEEeccccCC
Confidence 999999999999999999999999999999873
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.41 E-value=0.012 Score=45.98 Aligned_cols=69 Identities=22% Similarity=0.370 Sum_probs=41.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceee------eCCceeEEe-ecCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLS------FQDKAYTVE-ELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~------~~~~~~~v~-~~d~~~~~~~DvVf~a~g 110 (279)
.||+|||| |.||..+.-.|..+++ .-|++++.... ..|+.+. +.. ...+. .-+.+++.++|+|+.+.|
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l-~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~-~~~i~~~~~~~~~~daDvVVitaG 78 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGI-AREIVLEDIAKERVEAEVLDMQHGSSFYP-TVSIDGSDDPEICRDADMVVITAG 78 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSHHHHHHHHHHHHHTGGGST-TCEEEEESCGGGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC-CcEEEEEEeccccchhHHHHHHhccccCC-CceeecCCCHHHhhCCcEEEEecc
Confidence 58999997 9999999988877632 34676663221 1121111 111 12232 223456788999999987
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 79 ~ 79 (143)
T d1llda1 79 P 79 (143)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.40 E-value=0.0081 Score=46.50 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=26.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR 76 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~ 76 (279)
|||+|+|++|.+|+.|.+.|.+.+| ++.+. +|+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~---~V~l~-~R~ 33 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH---EIVVG-SRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC---EEEEE-ESS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC---EEEEE-ECC
Confidence 6899998899999999999998866 34434 554
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=95.38 E-value=0.0059 Score=52.79 Aligned_cols=31 Identities=26% Similarity=0.170 Sum_probs=26.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+||.|.||||++|+.|++.|.++++ ++..+.
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~---~V~~~~ 39 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGA---TVKGYS 39 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEE
Confidence 7999999999999999999999864 455453
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=95.28 E-value=0.025 Score=43.65 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=58.5
Q ss_pred CEEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC-CCCcEEEecCCCchhh
Q 023678 40 PSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISK 115 (279)
Q Consensus 40 ~kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s~ 115 (279)
.+||||||| +..|..+++.|.+++| ....+.- +..+..+. + ..... +..++ ..+|+|+++++.....
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~---~~~~v~~-~~~~~~i~--g--~~~~~-~l~~i~~~iD~v~v~~p~~~v~ 84 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGY---RVLPVNP-RFQGEELF--G--EEAVA-SLLDLKEPVDILDVFRPPSALM 84 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTC---EEEEECG-GGTTSEET--T--EECBS-SGGGCCSCCSEEEECSCHHHHT
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCC---CceEEEe-ccccceee--c--eeccc-chhhccCCCceEEEeccHHHHH
Confidence 579999998 6789999999998866 3444432 22332221 1 11111 12233 4689999999999999
Q ss_pred hhHHHHHhCCCEEEEcCCCC
Q 023678 116 KFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~ 135 (279)
+.++++.+.|++.+=+.+.+
T Consensus 85 ~~v~~~~~~g~k~i~~q~G~ 104 (136)
T d1iuka_ 85 DHLPEVLALRPGLVWLQSGI 104 (136)
T ss_dssp TTHHHHHHHCCSCEEECTTC
T ss_pred HHHHHHHhhCCCeEEEecCc
Confidence 99999999998755444443
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=95.25 E-value=0.0057 Score=52.10 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=24.9
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
||.|.||||++|+.|++.|.+++| +++.+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~---~V~~i 30 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGI---DLIVF 30 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC---EEEEE
Confidence 799999999999999999998865 45554
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=95.16 E-value=0.0079 Score=52.34 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=26.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.|||||+|+.|++.|.++|+ +++.+
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G~---~V~~~ 41 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHGY---KVRGT 41 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCcC---EEEEE
Confidence 47999999999999999999998865 44444
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.06 E-value=0.0082 Score=51.47 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=25.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.+|.|.||||++|+.|++.|.++|| +++.+.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~---~V~~~~ 32 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGY---EVHGLI 32 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcC---EEEEEE
Confidence 5788899999999999999999865 455553
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.89 E-value=0.0081 Score=51.78 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=25.1
Q ss_pred CEE-EEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSV-AVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kV-aIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+|| .|.||||++|+.|++.|.++|| +++.+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~---~V~~i~ 32 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY---EVHGIV 32 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC---EEEEEE
Confidence 378 5889999999999999998865 455553
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.58 E-value=0.024 Score=42.74 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=46.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CCceeEEeec-Cc-----cCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEEL-TE-----DSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~~~~~v~~~-d~-----~~~~~~DvVf~a~g~~ 112 (279)
|||.|+|+ |.+|+.+.+.|.++++ +++.+-.....-+.+.. .+......+. ++ ..+.++|.++.+++.+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~---~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d 76 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGH---DIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE 76 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---CcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcH
Confidence 79999996 9999999999998754 45555321110011111 1112212222 11 2346889999998887
Q ss_pred hhhhhHHH-HHhCCC
Q 023678 113 ISKKFGPI-AVEKGS 126 (279)
Q Consensus 113 ~s~~~~~~-~~~aG~ 126 (279)
........ +...|.
T Consensus 77 ~~N~~~~~~~k~~~~ 91 (132)
T d1lssa_ 77 EVNLMSSLLAKSYGI 91 (132)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 55433332 234444
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=94.21 E-value=0.0093 Score=48.19 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=42.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeee-----CCceeEEeecC-----ccCCCCCcEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF-----QDKAYTVEELT-----EDSFDGVDIAL 106 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~-----~~~~~~v~~~d-----~~~~~~~DvVf 106 (279)
+.++|.|.||+|-+|+++.+.|.+++ .+++.+ .|+. ..+.+.. ........++. .+.+.++|++|
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G---~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDili 97 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEG---AEVVLC-GRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF 97 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEE-ESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhc---cchhhc-ccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeee
Confidence 35799999999999999999999974 355554 3331 1111110 01112222222 12357889999
Q ss_pred ecCCC
Q 023678 107 FSAGG 111 (279)
Q Consensus 107 ~a~g~ 111 (279)
.++|.
T Consensus 98 n~Ag~ 102 (191)
T d1luaa1 98 TAGAI 102 (191)
T ss_dssp ECCCT
T ss_pred ecCcc
Confidence 88764
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=94.09 E-value=0.015 Score=46.21 Aligned_cols=90 Identities=13% Similarity=0.285 Sum_probs=53.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCC-c--e-eEEeecC--ccCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQD-K--A-YTVEELT--EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~-~--~-~~v~~~d--~~~~~~~DvVf~a~g~~ 112 (279)
.+|+||| .|..|..|.+.|.+++| ++..+ .|+.. -+.+...+ . . ......+ .+....+|++++++++.
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~---~V~v~-dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~ 77 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGF---VVCAF-NRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAG 77 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC---CEEEE-CSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTT
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCC---eEEEE-cCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCch
Confidence 5899999 79999999999999876 34444 33221 01111010 0 0 1111111 12346789999998886
Q ss_pred hhh-hhHHH---HHhCCCEEEEcCCC
Q 023678 113 ISK-KFGPI---AVEKGSIVVDNSSA 134 (279)
Q Consensus 113 ~s~-~~~~~---~~~aG~~VIDlS~~ 134 (279)
... +.... .+..|..|||.|..
T Consensus 78 ~~v~~v~~~l~~~~~~g~iiid~sT~ 103 (176)
T d2pgda2 78 QAVDNFIEKLVPLLDIGDIIIDGGNS 103 (176)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEECSCC
T ss_pred HHHHHHHHHHHhccccCcEEEecCcc
Confidence 542 22322 34578899999875
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=93.89 E-value=0.02 Score=50.13 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=23.8
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+|.|.||||++|+.|++.|.++|| +++.+
T Consensus 3 ~vLITGatGfiGs~lv~~Ll~~g~---~V~~~ 31 (357)
T d1db3a_ 3 VALITGVTGQDGSYLAEFLLEKGY---EVHGI 31 (357)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred EEEEeCCCcHHHHHHHHHHHHCcC---EEEEE
Confidence 456899999999999999999865 55555
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=93.86 E-value=0.042 Score=44.23 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=57.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cce---ee-------eCC-----------ceeEEeecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQ---LS-------FQD-----------KAYTVEELT 95 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~~---~~-------~~~-----------~~~~v~~~d 95 (279)
..||+|||| |.+|+.+...++.+|++ +.++ .+... .+. +. ..+ ..+.. ..+
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~~---V~l~-D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~ 77 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGTP---ILMK-DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLS 77 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCC---EEEE-CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCe---EEEE-ECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-ccc
Confidence 457999995 99999999999888764 3333 22211 000 00 000 01222 223
Q ss_pred ccCCCCCcEEEecCCCchhhh--hHH---HHHhCCCEEEEcCCCCCCC
Q 023678 96 EDSFDGVDIALFSAGGSISKK--FGP---IAVEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 96 ~~~~~~~DvVf~a~g~~~s~~--~~~---~~~~aG~~VIDlS~~~R~~ 138 (279)
.+++.++|+|+.|.+-....+ +.. ++...++.+-.+|+.+...
T Consensus 78 ~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~ 125 (186)
T d1wdka3 78 YGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS 125 (186)
T ss_dssp STTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH
T ss_pred cccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHH
Confidence 456788999999999875533 222 3345677888999988653
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=93.72 E-value=0.025 Score=46.96 Aligned_cols=29 Identities=24% Similarity=0.537 Sum_probs=23.4
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|.|.||||++|+.|++.|.++++ .++..+
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~--~~V~~~ 30 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGI--TDILVV 30 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTC--CCEEEE
T ss_pred EEEecCccHHHHHHHHHHHhCCC--CeEEEE
Confidence 78999999999999999999853 344444
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=93.37 E-value=0.051 Score=40.63 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=41.1
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-cc-----CCCCCcEEEecCCCchh
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-ED-----SFDGVDIALFSAGGSIS 114 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~-----~~~~~DvVf~a~g~~~s 114 (279)
++.|+|+ |.+|+.+.+.|.+++++. +++-.....=+.+...+....+.+.. ++ .+.++|.||.+++....
T Consensus 2 ~~iIiG~-G~~G~~la~~L~~~g~~v---vvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~ 77 (134)
T d2hmva1 2 QFAVIGL-GRFGGSIVKELHRMGHEV---LAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 77 (134)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCC---EEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHH
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCeE---EEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHH
Confidence 6899995 999999999999987763 33422111000111112222233322 21 24578999999987644
Q ss_pred h
Q 023678 115 K 115 (279)
Q Consensus 115 ~ 115 (279)
.
T Consensus 78 ~ 78 (134)
T d2hmva1 78 A 78 (134)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.33 E-value=0.089 Score=42.26 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=49.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
..+|+|+| .|.+|+.+.++|..- ..++..+ ++..... .. ....++ .+.+..+|+|++++|-.. ++.+
T Consensus 42 gk~vgIiG-~G~IG~~va~~l~~~---g~~v~~~-d~~~~~~----~~--~~~~~l-~ell~~sDiv~~~~pl~~~t~~l 109 (181)
T d1qp8a1 42 GEKVAVLG-LGEIGTRVGKILAAL---GAQVRGF-SRTPKEG----PW--RFTNSL-EEALREARAAVCALPLNKHTRGL 109 (181)
T ss_dssp TCEEEEES-CSTHHHHHHHHHHHT---TCEEEEE-CSSCCCS----SS--CCBSCS-HHHHTTCSEEEECCCCSTTTTTC
T ss_pred CceEEEec-cccccccceeeeecc---ccccccc-ccccccc----ce--eeeech-hhhhhccchhhcccccccccccc
Confidence 47899999 799999999999864 3355555 3322110 00 001122 234678999999987542 2222
Q ss_pred HH----HHHhCCCEEEEcC
Q 023678 118 GP----IAVEKGSIVVDNS 132 (279)
Q Consensus 118 ~~----~~~~aG~~VIDlS 132 (279)
.. ...+.|+.+|..|
T Consensus 110 i~~~~l~~mk~~ailIN~~ 128 (181)
T d1qp8a1 110 VKYQHLALMAEDAVFVNVG 128 (181)
T ss_dssp BCHHHHTTSCTTCEEEECS
T ss_pred cccceeeeccccceEEecc
Confidence 21 1236788999766
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=93.13 E-value=0.046 Score=43.41 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=47.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceee--eC-CceeEEeecCccCCCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLS--FQ-DKAYTVEELTEDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~--~~-~~~~~v~~~d~~~~~~~DvVf~a~g~~~s 114 (279)
..+|.|+|| |-+++.++..|.+. . .++..+ .|.. ..+.+. +. ...+...+.+......+|+++.|+|.+..
T Consensus 18 ~k~vlIlGa-GGaarai~~aL~~~--~-~~i~I~-nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~ 92 (171)
T d1p77a1 18 NQHVLILGA-GGATKGVLLPLLQA--Q-QNIVLA-NRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS 92 (171)
T ss_dssp TCEEEEECC-SHHHHTTHHHHHHT--T-CEEEEE-ESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC---
T ss_pred CCEEEEECC-cHHHHHHHHHHccc--C-ceeeec-cchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccccc
Confidence 468999995 77789999888875 3 465555 3321 111111 11 11222333333345689999999998754
Q ss_pred hhh---HHHHHhCCCEEEEc
Q 023678 115 KKF---GPIAVEKGSIVVDN 131 (279)
Q Consensus 115 ~~~---~~~~~~aG~~VIDl 131 (279)
... .......+..|+|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~D~ 112 (171)
T d1p77a1 93 GGTASVDAEILKLGSAFYDM 112 (171)
T ss_dssp ----CCCHHHHHHCSCEEES
T ss_pred ccccchhhhhhcccceeeee
Confidence 321 22334455666665
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.05 E-value=0.033 Score=48.10 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=23.6
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|.|.||||++|+.|++.|.+++| +++.+
T Consensus 4 ILVTGatGfIG~~lv~~Ll~~g~---~V~~~ 31 (347)
T d1z45a2 4 VLVTGGAGYIGSHTVVELIENGY---DCVVA 31 (347)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred EEEeCCCcHHHHHHHHHHHHCcC---eEEEE
Confidence 88999999999999999998865 44444
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=92.89 E-value=0.032 Score=43.34 Aligned_cols=86 Identities=20% Similarity=0.232 Sum_probs=46.9
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHHH
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~~ 120 (279)
||++|| .|..|..+.+.|.+.+| .+ .. . +...+..... ..........+...++|++|.+++..........
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~---~~-~~-~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~ 73 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFP---TL-VW-N-RTFEKALRHQ-EEFGSEAVPLERVAEARVIFTCLPTTREVYEVAE 73 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSC---EE-EE-C-SSTHHHHHHH-HHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHH
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCC---EE-EE-e-CCHHHHHHHH-HHcCCcccccccccceeEEEecccchhhhhhhhc
Confidence 699999 79999999999987643 22 22 2 2222211110 0000111112344568999999887654332222
Q ss_pred -H---HhCCCEEEEcCCC
Q 023678 121 -A---VEKGSIVVDNSSA 134 (279)
Q Consensus 121 -~---~~aG~~VIDlS~~ 134 (279)
+ ...|..+||.|..
T Consensus 74 ~l~~~~~~~~~iid~sT~ 91 (156)
T d2cvza2 74 ALYPYLREGTYWVDATSG 91 (156)
T ss_dssp HHTTTCCTTEEEEECSCC
T ss_pred cccccccccccccccccC
Confidence 2 2345567777654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.32 E-value=0.017 Score=45.93 Aligned_cols=89 Identities=17% Similarity=0.037 Sum_probs=50.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc---c------CCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE---D------SFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~---~------~~~~~DvVf~a~ 109 (279)
.-+|.|.||+|-||...+++.... ..+++.+.+++..-......+.+..+...+. + .-.++|+||.|.
T Consensus 30 G~~VlV~ga~ggvG~~aiqlak~~---Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~v 106 (182)
T d1v3va2 30 GETVLVSAAAGAVGSVVGQIAKLK---GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNV 106 (182)
T ss_dssp SCEEEESSTTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCEEEEEeCCCchhHHHHHHHHcc---CCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEec
Confidence 468999999999999999988766 3466666543221111111222222321111 0 124799999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEc
Q 023678 110 GGSISKKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDl 131 (279)
|.....+....+ +.|-.++-.
T Consensus 107 G~~~~~~~~~~l-~~~G~~v~~ 127 (182)
T d1v3va2 107 GGEFLNTVLSQM-KDFGKIAIC 127 (182)
T ss_dssp CHHHHHHHGGGE-EEEEEEEEC
T ss_pred Cchhhhhhhhhc-cCCCeEEee
Confidence 865544444333 444444433
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=92.17 E-value=0.37 Score=38.37 Aligned_cols=86 Identities=19% Similarity=0.392 Sum_probs=51.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-----------------------CCceeEEe-e
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-----------------------QDKAYTVE-E 93 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-----------------------~~~~~~v~-~ 93 (279)
+..||+||| .|..|-+....|.+++| ++.++-.....|-.+.. .+.++.+. .
T Consensus 42 ~~k~V~IIG-aGPAGL~AA~~la~~G~---~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~ 117 (179)
T d1ps9a3 42 QKKNLAVVG-AGPAGLAFAINAAARGH---QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT 117 (179)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHTTTC---EEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCC
T ss_pred CCcEEEEEC-ccHHHHHHHHHHHhhcc---ceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCE
Confidence 357999999 59999999999999876 55556433333321110 01122221 2
Q ss_pred cCccCCCCCcEEEecCCCchhhhhHHHHHhCCCEE
Q 023678 94 LTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIV 128 (279)
Q Consensus 94 ~d~~~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~V 128 (279)
.+.+...+.|.||.|+|.. .+.......+.|-.|
T Consensus 118 Vt~~~~~~~d~vilAtG~~-~~~~~~pg~~~g~~v 151 (179)
T d1ps9a3 118 VTADQLQAFDETILASGIP-NRALAQPLIDSGKTV 151 (179)
T ss_dssp CCSSSSCCSSEEEECCCEE-CCTTHHHHHTTTCCE
T ss_pred EcccccccceeEEEeecCC-CcccccchhccCCEE
Confidence 3334456789999999874 233343445555543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.07 E-value=0.14 Score=39.82 Aligned_cols=90 Identities=14% Similarity=0.140 Sum_probs=53.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEe--ecCcc--------CC-CCCcEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVE--ELTED--------SF-DGVDIAL 106 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~--~~d~~--------~~-~~~DvVf 106 (279)
.-+|+|+|+ |-+|.-.+.++...+ ..+++.+. +...-..+. .-+.+..+. +.+.. .. .++|+||
T Consensus 27 gd~VlI~G~-G~iG~~~~~~a~~~G--~~~Vi~~d-~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 27 GHKVLVCGA-GPIGMVTLLVAKAMG--AAQVVVTD-LSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEEE-SCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCEEEEECC-CccHHHHHHHHHHcC--CceEEecc-CCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEE
Confidence 358999996 999999999887763 33444442 221100000 011122221 11110 01 3689999
Q ss_pred ecCCCchhhhhHHHHHhCCCEEEEcC
Q 023678 107 FSAGGSISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 107 ~a~g~~~s~~~~~~~~~aG~~VIDlS 132 (279)
.|+|...+.+.+-.+++.|-+++=.+
T Consensus 103 d~~G~~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 103 ECTGAEASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp ECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred eccCCchhHHHHHHHhcCCCEEEEEe
Confidence 99999888887777777777766444
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.11 Score=47.20 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=49.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE-------------eecCCCCceeee----------CCceeEEee--c
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-------------ASKRSAGKQLSF----------QDKAYTVEE--L 94 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l-------------~s~~s~G~~~~~----------~~~~~~v~~--~ 94 (279)
.||.|+|+ |-+|.++++.|...|+-.+.++=. .+.+..|+.-.. ....+.... +
T Consensus 38 ~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 116 (426)
T d1yovb1 38 CKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI 116 (426)
T ss_dssp CCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSCG
T ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeeccc
Confidence 58999997 669999999999886554443211 011122322110 111222222 1
Q ss_pred C---ccCCCCCcEEEecCCCchhhhhHHHHH
Q 023678 95 T---EDSFDGVDIALFSAGGSISKKFGPIAV 122 (279)
Q Consensus 95 d---~~~~~~~DvVf~a~g~~~s~~~~~~~~ 122 (279)
. .+.+.+.|+||+|++.-.++.+..+..
T Consensus 117 ~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c 147 (426)
T d1yovb1 117 QDFNDTFYRQFHIIVCGLDSIIARRWINGML 147 (426)
T ss_dssp GGBCHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred cchHHHHHHhcchheeccCcHHHHHHHHHHH
Confidence 1 122478999999999999988887764
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.92 E-value=0.18 Score=38.46 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=25.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+..+|.|||+ |.+|.+-++.|.+.| .++.++
T Consensus 12 ~gkrvLViGg-G~va~~ka~~Ll~~G---A~VtVv 42 (150)
T d1kyqa1 12 KDKRILLIGG-GEVGLTRLYKLMPTG---CKLTLV 42 (150)
T ss_dssp TTCEEEEEEE-SHHHHHHHHHHGGGT---CEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEE
Confidence 3679999995 999999999999864 355555
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.51 E-value=0.25 Score=39.37 Aligned_cols=96 Identities=18% Similarity=0.244 Sum_probs=58.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+-|..+|.+++ ..+....+ +. ..+ .+...++|+++.|.|...- +-
T Consensus 39 Gk~vvVIGrS~iVGrPLa~lL~~~g---atVt~~~~-~t--~~l-------------~~~~~~aDivi~a~G~~~~--i~ 97 (170)
T d1a4ia1 39 GRHAVVVGRSKIVGAPMHDLLLWNN---ATVTTCHS-KT--AHL-------------DEEVNKGDILVVATGQPEM--VK 97 (170)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTT---CEEEEECT-TC--SSH-------------HHHHTTCSEEEECCCCTTC--BC
T ss_pred cceEEEEecCCccchHHHHHHHhcc---CceEEEec-cc--ccH-------------HHHHhhccchhhccccccc--cc
Confidence 5799999999999999999998863 33333321 11 000 1123578999999886432 33
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCC---ceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENV---PLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~v---plvvPevN~~~i~~ 155 (279)
+...+.|+.|||..-.+-.++.. .-++-.++.+....
T Consensus 98 ~~~vk~g~iviDvgi~~~~~~~~~~~~~~~gdvd~~~v~~ 137 (170)
T d1a4ia1 98 GEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKE 137 (170)
T ss_dssp GGGSCTTCEEEECCCBC----------CCBCSBCHHHHTT
T ss_pred cccccCCCeEeccCcccccccccCCCCEEecccchHhhhh
Confidence 45678999999997654222211 22455666666553
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.20 E-value=0.037 Score=43.52 Aligned_cols=89 Identities=21% Similarity=0.198 Sum_probs=50.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ecCc-c------CCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTE-D------SFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d~-~------~~~~~DvVf~a~ 109 (279)
.-+|.|.||+|-+|...++++...+ .+++...++.+.-..+...+.+..+. +.+. + .-.++|++|.|+
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~~g---~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~ 102 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKMIG---ARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSL 102 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHT---CEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred CCEEEEECCCCCcccccchhhcccc---ccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence 3689999999999999999886653 45555543221101111122222222 1111 1 114789999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEc
Q 023678 110 GGSISKKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDl 131 (279)
+.....+. -++++.+-++|..
T Consensus 103 g~~~~~~~-~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 103 AGEAIQRG-VQILAPGGRFIEL 123 (183)
T ss_dssp CTHHHHHH-HHTEEEEEEEEEC
T ss_pred cchHHHHH-HHHhcCCCEEEEE
Confidence 97544443 3455555566655
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=91.09 E-value=0.087 Score=41.41 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=41.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceee--eCC-ceeEEeecCccCCCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLS--FQD-KAYTVEELTEDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~--~~~-~~~~v~~~d~~~~~~~DvVf~a~g~~~s 114 (279)
..+|.|+|| |-+++.++-.|.+.+ .++..+ .|.. ..+.+. +.. ..+...+.+......+|+++-|++.+..
T Consensus 18 ~k~vlIlGa-GGaarai~~al~~~g---~~i~I~-nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~ 92 (170)
T d1nyta1 18 GLRILLIGA-GGASRGVLLPLLSLD---CAVTIT-NRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS 92 (170)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---CEEEEE-CSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred CCEEEEECC-cHHHHHHHHHhcccc---eEEEec-cchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc
Confidence 468999995 777899999998873 354444 3321 111111 111 1222333332234578999999998765
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=91.08 E-value=0.13 Score=40.26 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=40.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC----ccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT----EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d----~~~~~~~DvVf~a~g~~ 112 (279)
.-+|.|.||+|-+|...++++...+ .+++.+.++...-+....-+.+..+..-+ .....++|+||.|.|..
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak~~G---~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~~ 102 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVARAMG---LRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGKE 102 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTT---CEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCTT
T ss_pred CCEEEEEeccccchhhhhhhhcccc---cccccccccccccccccccccceeeehhhhhhhhhccccccccccccchh
Confidence 4689999999999999999987764 35555543221111111112222221111 11235788888887743
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.86 E-value=0.18 Score=40.38 Aligned_cols=89 Identities=12% Similarity=0.308 Sum_probs=51.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC----CCceeeeCC-ceeEEeecCcc----CCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS----AGKQLSFQD-KAYTVEELTED----SFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s----~G~~~~~~~-~~~~v~~~d~~----~~~~~DvVf~a~ 109 (279)
.++|.|||.+..||+=|..+|.+++ ..+....+... .+..+.... ..-.+.....+ ....+|+++.|.
T Consensus 29 GK~vvVIGrS~iVG~Pla~lL~~~g---aTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsav 105 (171)
T d1edza1 29 GKKCIVINRSEIVGRPLAALLANDG---ATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV 105 (171)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTS---CEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCEEEEECCccccHHHHHHHHHHCC---CEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEcc
Confidence 5799999999999999999999873 33333321100 000000000 01112122111 123689999999
Q ss_pred CCc---hhhhhHHHHHhCCCEEEEcCCC
Q 023678 110 GGS---ISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 110 g~~---~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
|.. +..++ .+.|+.|||.+-.
T Consensus 106 G~p~~~i~~d~----ik~GavvIDvGi~ 129 (171)
T d1edza1 106 PSENYKFPTEY----IKEGAVCINFACT 129 (171)
T ss_dssp CCTTCCBCTTT----SCTTEEEEECSSS
T ss_pred CCCccccChhh----cccCceEeecccc
Confidence 874 23344 4679999998753
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.70 E-value=0.019 Score=45.02 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=51.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCcee-eeCCceeEEee--cCc-c------CCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL-SFQDKAYTVEE--LTE-D------SFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~-~~~~~~~~v~~--~d~-~------~~~~~DvVf~a 108 (279)
.-+|.|+|++|-+|...+.++... ...+++.+. ++.....+ ...+.+..+.. .+. + .-.++|++|.|
T Consensus 28 g~~vlV~G~~G~vG~~~~~~~~~~--g~~~V~~~~-~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~ 104 (170)
T d1jvba2 28 TKTLLVVGAGGGLGTMAVQIAKAV--SGATIIGVD-VREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDL 104 (170)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHH--TCCEEEEEE-SSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCEEEEEeccccceeeeeeccccc--ccccccccc-cchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcc
Confidence 358999999999999999988876 334544443 22111000 00121222221 110 0 01358999999
Q ss_pred CCCchhhhhHHHHHhCCCEEEEc
Q 023678 109 AGGSISKKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 109 ~g~~~s~~~~~~~~~aG~~VIDl 131 (279)
.+...+.+.+-.+++.|-+++-.
T Consensus 105 ~g~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 105 NNSEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp CCCHHHHTTGGGGEEEEEEEEEC
T ss_pred cccchHHHhhhhhcccCCEEEEe
Confidence 99877666655565666565534
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.70 E-value=0.22 Score=38.73 Aligned_cols=84 Identities=15% Similarity=0.077 Sum_probs=46.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCcc----------CCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED----------SFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~----------~~~~~DvVf~a 108 (279)
.-+|.|+||.| +|...+.++... -..+++.+.+.+..-+.....+.+..+...+.+ .-.++|++|.|
T Consensus 29 GdtVlV~GaGG-~G~~~~~~~~~~--g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 29 GSTCAVFGLGG-VGLSVIMGCKAA--GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp TCEEEEECCSH-HHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCEEEEECCCC-cHHHHHHHHHHc--CCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 36899999955 787777777765 334554443222110000011222222211111 12479999999
Q ss_pred CCCchhhhhHHHHHhCC
Q 023678 109 AGGSISKKFGPIAVEKG 125 (279)
Q Consensus 109 ~g~~~s~~~~~~~~~aG 125 (279)
.|...+.+.+...+..|
T Consensus 106 ~G~~~~~~~a~~~~~~~ 122 (176)
T d2jhfa2 106 IGRLDTMVTALSCCQEA 122 (176)
T ss_dssp SCCHHHHHHHHHHBCTT
T ss_pred CCchhHHHHHHHHHhcC
Confidence 99987766666666554
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=90.53 E-value=0.059 Score=42.49 Aligned_cols=87 Identities=16% Similarity=0.271 Sum_probs=48.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhh--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK-- 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~-- 115 (279)
..||.|+|| |-+++.++..|.+.++.. +..+ .|+. ..+.+... .....++.....++|+++-|+|-+...
T Consensus 17 ~~~vlIlGa-GGaarai~~aL~~~g~~~--I~I~-nR~~~ka~~L~~~---~~~~~~~~~~~~~~DliINaTpiGm~~~~ 89 (167)
T d1npya1 17 NAKVIVHGS-GGMAKAVVAAFKNSGFEK--LKIY-ARNVKTGQYLAAL---YGYAYINSLENQQADILVNVTSIGMKGGK 89 (167)
T ss_dssp TSCEEEECS-STTHHHHHHHHHHTTCCC--EEEE-CSCHHHHHHHHHH---HTCEEESCCTTCCCSEEEECSSTTCTTST
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCE--EEEe-cccHHHHHHHHHh---hhhhhhhcccccchhhheeccccCCcccc
Confidence 368999995 778899999998875433 3333 3321 11111110 001111222235689999999865321
Q ss_pred -----hhHHHHHhCCCEEEEcC
Q 023678 116 -----KFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 116 -----~~~~~~~~aG~~VIDlS 132 (279)
.+-......+..|+|+-
T Consensus 90 ~~~~l~~~~~~~~~~~~v~D~v 111 (167)
T d1npya1 90 EEMDLAFPKAFIDNASVAFDVV 111 (167)
T ss_dssp TTTSCSSCHHHHHHCSEEEECC
T ss_pred ccccccccHhhcCCcceEEEEe
Confidence 12234456677888864
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.34 E-value=0.063 Score=43.43 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
|||+|+| .||||..+...|++++|
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~ 24 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGH 24 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCC
Confidence 7899999 79999999999998865
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=90.19 E-value=0.087 Score=41.37 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=49.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--eeeCC------ceeEEe-ecC--ccCCCCCcEEEec
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LSFQD------KAYTVE-ELT--EDSFDGVDIALFS 108 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~~~~------~~~~v~-~~d--~~~~~~~DvVf~a 108 (279)
|||+||| .|..|..|.+.|.+++|+ +... ++. ..+. +...+ ...... +.+ .......+.++.+
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~---V~~~-dr~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFK---VAVF-NRT-YSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALIL 75 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCC---EEEE-CSS-HHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEEC
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCe---EEEE-ECC-HHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEe
Confidence 6899999 899999999999998764 3333 332 1111 10000 111111 111 1123455666666
Q ss_pred CCCchhh-hhH---HHHHhCCCEEEEcCCCC
Q 023678 109 AGGSISK-KFG---PIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 109 ~g~~~s~-~~~---~~~~~aG~~VIDlS~~~ 135 (279)
.+..... ... ......|..+||.|...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~iii~~st~~ 106 (178)
T d1pgja2 76 VQAGAATDSTIEQLKKVFEKGDILVDTGNAH 106 (178)
T ss_dssp CCCSHHHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred ecCcchhhhhhhhhhhhccccceecccCccc
Confidence 6655432 222 23356778899988653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.065 Score=42.01 Aligned_cols=90 Identities=19% Similarity=0.129 Sum_probs=49.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ecCc-c------CCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTE-D------SFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d~-~------~~~~~DvVf~a~ 109 (279)
.-+|.|.||+|-||...++++...+ .+++.+.+++..-+.....+.+..+. +.+. + .-.++|+||.|.
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~G---~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~ 105 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAYG---LKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEML 105 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred CCEEEEEeccccccccccccccccC---cccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeecc
Confidence 3589999999999999999887763 45555543221101111112222221 1110 0 113689999998
Q ss_pred CCchhhhhHHHHHhCCCEEEEcC
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS 132 (279)
+.... +..-++++.|-++|...
T Consensus 106 g~~~~-~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 106 ANVNL-SKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp HHHHH-HHHHHHEEEEEEEEECC
T ss_pred cHHHH-HHHHhccCCCCEEEEEe
Confidence 85433 33334445555566553
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.06 E-value=0.081 Score=41.74 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=50.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEee--cCcc----------CCCCCcEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEE--LTED----------SFDGVDIA 105 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~--~d~~----------~~~~~DvV 105 (279)
.-+|.|+|| |-+|...++++...+ ..+++.+. ++..-..+. .-+.+..+.. .+.. .-.++|+|
T Consensus 29 G~~VlV~Ga-G~iG~~~~~~ak~~G--a~~Vi~~~-~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvv 104 (182)
T d1vj0a2 29 GKTVVIQGA-GPLGLFGVVIARSLG--AENVIVIA-GSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFI 104 (182)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT--BSEEEEEE-SCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCEEEEECC-Cccchhheecccccc--cccccccc-cccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEE
Confidence 368999996 999999999887764 22444443 221100110 0122222211 1100 01368999
Q ss_pred EecCCCchhhhhHHHHHhCCCEEEEc
Q 023678 106 LFSAGGSISKKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~~~aG~~VIDl 131 (279)
|.|+|...+.+.+-++++.|-+++-.
T Consensus 105 id~vG~~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 105 LEATGDSRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp EECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred eecCCchhHHHHHHHHhcCCCEEEEE
Confidence 99999877766666666766665534
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=0.18 Score=40.33 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=48.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-----
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI----- 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~----- 113 (279)
..+|+|+| .|.+|+++.++|..- ..++... ++.... .. .....+.+++ +.++.+|++++++|-..
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~f---g~~v~~~-d~~~~~---~~-~~~~~~~~l~-ell~~sDii~i~~plt~~T~~l 113 (188)
T d1sc6a1 44 GKKLGIIG-YGHIGTQLGILAESL---GMYVYFY-DIENKL---PL-GNATQVQHLS-DLLNMSDVVSLHVPENPSTKNM 113 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHT---TCEEEEE-CSSCCC---CC-TTCEECSCHH-HHHHHCSEEEECCCSSTTTTTC
T ss_pred ceEEEEee-cccchhhhhhhcccc---cceEeec-cccccc---hh-hhhhhhhhHH-HHHhhccceeecccCCcchhhh
Confidence 47999999 899999999998764 4455444 332111 00 1111222222 23467899999987432
Q ss_pred -hhhhHHHHHhCCCEEEEcC
Q 023678 114 -SKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 114 -s~~~~~~~~~aG~~VIDlS 132 (279)
.++.... .+.|+.+|-.|
T Consensus 114 i~~~~l~~-mk~~a~lIN~a 132 (188)
T d1sc6a1 114 MGAKEISL-MKPGSLLINAS 132 (188)
T ss_dssp BCHHHHHH-SCTTEEEEECS
T ss_pred ccHHHHhh-CCCCCEEEEcC
Confidence 2333333 36788888433
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=89.77 E-value=0.24 Score=35.79 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDR 62 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~ 62 (279)
.+||+||| +|..|.++...|...
T Consensus 32 gK~VlVVG-~g~Sa~dia~~l~~~ 54 (107)
T d2gv8a2 32 GESVLVVG-GASSANDLVRHLTPV 54 (107)
T ss_dssp TCCEEEEC-SSHHHHHHHHHHTTT
T ss_pred CCeEEEEC-CCCCHHHHHHHHHHh
Confidence 46899999 799999999999754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.71 E-value=0.15 Score=39.52 Aligned_cols=89 Identities=11% Similarity=0.128 Sum_probs=50.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecC----ccCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELT----EDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d----~~~~~~~DvVf~a~g~~~ 113 (279)
.-+|.|+|+ |-+|...++++...+ .+.+.+. ++....... .-+.+..+...+ .....++|++|.|++...
T Consensus 31 G~~VlI~Ga-G~vG~~a~qlak~~G---a~~i~~~-~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~ 105 (168)
T d1uufa2 31 GKKVGVVGI-GGLGHMGIKLAHAMG---AHVVAFT-TSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH 105 (168)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEE-SSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC
T ss_pred CCEEEEecc-chHHHHHHHHhhccc---ccchhhc-cchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecch
Confidence 468999996 889999998887653 3444443 322211111 112232332111 123357999999998766
Q ss_pred hhhhHHHHHhCCCEEEEcC
Q 023678 114 SKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 114 s~~~~~~~~~aG~~VIDlS 132 (279)
+.+..-..+..|-+++-.+
T Consensus 106 ~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 106 NLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp CHHHHHTTEEEEEEEEECC
T ss_pred hHHHHHHHHhcCCEEEEec
Confidence 5554444445555555443
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=89.56 E-value=0.086 Score=41.91 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=42.3
Q ss_pred CCEEEEECcCcHHHHH--HHHHHHcC-CCCceEEEEEeecCC--CCce------eeeCCceeEEee-cC-ccCCCCCcEE
Q 023678 39 APSVAVVGVTGAVGQE--FLSVLSDR-DFPYRSIKMLASKRS--AGKQ------LSFQDKAYTVEE-LT-EDSFDGVDIA 105 (279)
Q Consensus 39 ~~kVaIiGATG~VG~e--Ll~lL~~~-~~p~~~l~~l~s~~s--~G~~------~~~~~~~~~v~~-~d-~~~~~~~DvV 105 (279)
.|||+|||| |.+|.. ++..|... .++..+++++.-... .+.. ......+..+.. .| .+.+.++|+|
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V 80 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 80 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence 489999996 988864 34444433 233457777732111 0000 001122344443 23 3457899999
Q ss_pred EecCCCchhhh
Q 023678 106 LFSAGGSISKK 116 (279)
Q Consensus 106 f~a~g~~~s~~ 116 (279)
+.+.+.+-...
T Consensus 81 v~~~~~g~~~~ 91 (171)
T d1obba1 81 INTAMVGGHTY 91 (171)
T ss_dssp EECCCTTHHHH
T ss_pred eeecccccccc
Confidence 99988765443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=89.47 E-value=0.1 Score=41.82 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=55.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CCceeEEeecC----ccCCCCCcEEEecC---
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELT----EDSFDGVDIALFSA--- 109 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~~~~~v~~~d----~~~~~~~DvVf~a~--- 109 (279)
+.-||.|+| .|-+|.+-++.....+ .++.++..+...-+.+.. ....+.....+ .+.+.++|+|+.|.
T Consensus 31 ~pa~V~ViG-aGvaG~~A~~~A~~lG---A~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalip 106 (168)
T d1pjca1 31 KPGKVVILG-GGVVGTEAAKMAVGLG---AQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVP 106 (168)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred CCcEEEEEC-CChHHHHHHHHHhhCC---CEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecC
Confidence 357999999 5999999999987763 344455322111111111 11222332222 22356899999995
Q ss_pred ----CCchhhhhHHHHHhCCCEEEEcCCCC
Q 023678 110 ----GGSISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 110 ----g~~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
|.-++++.+.. .+.|.++||++.|.
T Consensus 107 G~~aP~lIt~~mv~~-Mk~GSVIVDvaidq 135 (168)
T d1pjca1 107 GRRAPILVPASLVEQ-MRTGSVIVDVAVDQ 135 (168)
T ss_dssp TSSCCCCBCHHHHTT-SCTTCEEEETTCTT
T ss_pred CcccCeeecHHHHhh-cCCCcEEEEeecCC
Confidence 33344444432 47899999999875
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=89.11 E-value=0.25 Score=39.99 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=48.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchh----
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS---- 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s---- 114 (279)
..+|+|+| .|.+|+++.++|..- ..++... +++.... ........+++ +.+..+|+|.+++|....
T Consensus 45 ~ktvgIiG-~G~IG~~va~~l~~f---g~~v~~~-d~~~~~~----~~~~~~~~~l~-~l~~~~D~v~~~~plt~~T~~l 114 (199)
T d1dxya1 45 QQTVGVMG-TGHIGQVAIKLFKGF---GAKVIAY-DPYPMKG----DHPDFDYVSLE-DLFKQSDVIDLHVPGIEQNTHI 114 (199)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHT---TCEEEEE-CSSCCSS----CCTTCEECCHH-HHHHHCSEEEECCCCCGGGTTS
T ss_pred ceeeeeee-ccccccccccccccc---ceeeecc-CCccchh----hhcchhHHHHH-HHHHhcccceeeeccccccccc
Confidence 36899999 799999999999754 3455444 3322110 01112222221 234678999999875433
Q ss_pred --hhhHHHHHhCCCEEEEcCC
Q 023678 115 --KKFGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 115 --~~~~~~~~~aG~~VIDlS~ 133 (279)
++.. ...+.|+.+| |.+
T Consensus 115 i~~~~l-~~mk~~a~lI-N~a 133 (199)
T d1dxya1 115 INEAAF-NLMKPGAIVI-NTA 133 (199)
T ss_dssp BCHHHH-HHSCTTEEEE-ECS
T ss_pred ccHHHh-hccCCceEEE-ecc
Confidence 2222 2245788877 444
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=88.96 E-value=0.24 Score=39.37 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=63.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..++|.|+|.+..+|+-|..+|.+++ ..+....+ ++.. + .+....+|+++.|.|..-- +
T Consensus 36 ~GK~v~VIGrS~~VG~Pla~lL~~~g---atVt~~h~-~t~~--l-------------~~~~~~ADivI~a~G~p~~--i 94 (166)
T d1b0aa1 36 FGLNAVVIGASNIVGRPMSMELLLAG---CTTTVTHR-FTKN--L-------------RHHVENADLLIVAVGKPGF--I 94 (166)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTT---CEEEEECS-SCSC--H-------------HHHHHHCSEEEECSCCTTC--B
T ss_pred ccceEEEEeccccccHHHHHHHHHhh---cccccccc-ccch--h-------------HHHHhhhhHhhhhccCccc--c
Confidence 35799999999999999999998763 34333321 1100 0 1113468999999885421 2
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCCh
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~ 172 (279)
-+...+.|+.|||..-. |.++. -++-.++.+.++.. ...+.-.||=.
T Consensus 95 ~~~~vk~g~vvIDvGi~-~~~~~--~~~Gdvd~~~v~~~-----a~~~TPvPGGV 141 (166)
T d1b0aa1 95 PGDWIKEGAIVIDVGIN-RLENG--KVVGDVVFEDAAKR-----ASYITPVPGGV 141 (166)
T ss_dssp CTTTSCTTCEEEECCCE-ECTTS--CEECSBCHHHHHHH-----CSEECCSSSSS
T ss_pred cccccCCCcEEEecCce-ecCCC--CEEeccccHhHHhh-----eeEeCCCCCcc
Confidence 23345789999998643 43332 24566776666541 23344566633
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.79 E-value=0.97 Score=32.56 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD 63 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~ 63 (279)
..+|+||| .|++|-|+...|.+.|
T Consensus 22 p~~v~IiG-gG~ig~E~A~~l~~~G 45 (117)
T d1ebda2 22 PKSLVVIG-GGYIGIELGTAYANFG 45 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT
T ss_pred CCeEEEEC-CCccceeeeeeecccc
Confidence 46899999 5999999999998864
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.63 E-value=0.98 Score=33.11 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD 63 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~ 63 (279)
..|++|+| .|++|-|+...|.+.+
T Consensus 23 p~~~vIiG-~G~ig~E~A~~l~~lG 46 (122)
T d1v59a2 23 PKRLTIIG-GGIIGLEMGSVYSRLG 46 (122)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT
T ss_pred CCeEEEEC-CCchHHHHHHHHHhhC
Confidence 46899999 5999999999998763
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=88.46 E-value=0.6 Score=34.13 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=25.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
..|++|+| .|++|-|+...|.+.| .++..+.
T Consensus 22 p~~i~IiG-~G~ig~E~A~~l~~~G---~~Vtiv~ 52 (119)
T d3lada2 22 PGKLGVIG-AGVIGLELGSVWARLG---AEVTVLE 52 (119)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCeEEEEC-CChHHHHHHHHHHHcC---CceEEEE
Confidence 57899999 6999999999998764 3555554
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.44 E-value=0.26 Score=38.08 Aligned_cols=84 Identities=17% Similarity=0.059 Sum_probs=47.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eee-eCCceeEEeecCc-c---------CCCCCcEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLS-FQDKAYTVEELTE-D---------SFDGVDIAL 106 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~-~~~~~~~v~~~d~-~---------~~~~~DvVf 106 (279)
.-+|.|.|+. -+|...+..+...+ ...++...+ +..+ .+. .-+.+..+...+. + .-.++|+||
T Consensus 29 G~tVlI~GaG-GvG~~aiq~ak~~G--~~~vi~~~~--~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vi 103 (176)
T d2fzwa2 29 GSVCAVFGLG-GVGLAVIMGCKVAG--ASRIIGVDI--NKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSF 103 (176)
T ss_dssp TCEEEEECCS-HHHHHHHHHHHHHT--CSEEEEECS--CGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCEEEEecch-hHHHHHHHHHHHHh--cCceEEEcc--cHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEee
Confidence 3689999985 57888888877653 233333322 2111 111 1122222221111 1 124799999
Q ss_pred ecCCCchhhhhHHHHHhCCCE
Q 023678 107 FSAGGSISKKFGPIAVEKGSI 127 (279)
Q Consensus 107 ~a~g~~~s~~~~~~~~~aG~~ 127 (279)
.|+|...+.+.+..++..|..
T Consensus 104 d~~G~~~~~~~~~~~~~~g~~ 124 (176)
T d2fzwa2 104 ECIGNVKVMRAALEACHKGWG 124 (176)
T ss_dssp ECSCCHHHHHHHHHTBCTTTC
T ss_pred ecCCCHHHHHHHHHhhcCCce
Confidence 999998887777777766643
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=87.95 E-value=0.56 Score=35.91 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=52.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEE-eecCcc------------CCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTV-EELTED------------SFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v-~~~d~~------------~~~~~Dv 104 (279)
.-+|.|+| .|-+|.-.++.+...+ .+++.+... ..-..+. .-+.+..+ .+...+ .-.++|+
T Consensus 27 g~~vlV~G-~G~vG~~~~~~ak~~G---a~vi~v~~~-~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~ 101 (170)
T d1e3ja2 27 GTTVLVIG-AGPIGLVSVLAAKAYG---AFVVCTARS-PRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNV 101 (170)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEESC-HHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred CCEEEEEc-ccccchhhHhhHhhhc---ccccccchH-HHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCce
Confidence 35899998 6999999999887763 365555322 1101100 01111111 111100 0136899
Q ss_pred EEecCCCchhhhhHHHHHhCCCEEEEcC
Q 023678 105 ALFSAGGSISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 105 Vf~a~g~~~s~~~~~~~~~aG~~VIDlS 132 (279)
||.|+|...+.+.+-++++.|-+++-.+
T Consensus 102 vid~~g~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 102 TIDCSGNEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp EEECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred eeecCCChHHHHHHHHHHhcCCceEEEe
Confidence 9999999877777767777777666444
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.78 E-value=0.55 Score=33.99 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=24.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
..|++|+| .|++|-|+...|.+.+. ++.++-
T Consensus 21 p~~vvIiG-gG~~G~E~A~~l~~~g~---~Vtlve 51 (115)
T d1lvla2 21 PQHLVVVG-GGYIGLELGIAYRKLGA---QVSVVE 51 (115)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHTC---EEEEEC
T ss_pred CCeEEEEC-CCHHHHHHHHHHhhccc---ceEEEe
Confidence 46899999 59999999999988753 555553
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=87.64 E-value=0.27 Score=36.95 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=26.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
..||.||| .|++|-++...|.+++ +..++.++.
T Consensus 2 gkrivIvG-gG~~G~e~A~~l~~~~-~~~~Vtlie 34 (186)
T d1fcda1 2 GRKVVVVG-GGTGGATAAKYIKLAD-PSIEVTLIE 34 (186)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHC-TTSEEEEEC
T ss_pred CCcEEEEC-ccHHHHHHHHHHHHcC-CCCcEEEEE
Confidence 36999999 5999999999997764 667777763
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.51 E-value=0.2 Score=42.20 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=34.8
Q ss_pred CCCCCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 20 NKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+|..|||....+.+. +.+.|.||||-+|+.+.+.|.+.| .+++..
T Consensus 10 ~~~~~~~~~~~~~l~g----K~alITGas~GIG~aiA~~la~~G---a~Vii~ 55 (294)
T d1w6ua_ 10 FSPLQKAMLPPNSFQG----KVAFITGGGTGLGKGMTTLLSSLG---AQCVIA 55 (294)
T ss_dssp SCCCCSCCSCTTTTTT----CEEEEETTTSHHHHHHHHHHHHTT---CEEEEE
T ss_pred cCcccccCCCCCCCCC----CEEEEeCCCCHHHHHHHHHHHHcC---CEEEEE
Confidence 4677888876544333 589999999999999999999875 354444
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=87.50 E-value=0.97 Score=37.98 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=56.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-----CCCceeee------------CC--c------eeEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-----SAGKQLSF------------QD--K------AYTVE 92 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-----s~G~~~~~------------~~--~------~~~v~ 92 (279)
+..+|+|=| .|.||+.+.+.|.+.+ .+++.+.... ..|-.+.. .+ . .....
T Consensus 35 ~g~~v~IQG-fGnVG~~~a~~L~e~G---akvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (255)
T d1bgva1 35 VGKTVALAG-FGNVAWGAAKKLAELG---AKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF 110 (255)
T ss_dssp TTCEEEECC-SSHHHHHHHHHHHHHT---CEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcC---CeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee
Confidence 357999999 8999999999999864 4666664321 12221110 00 0 01122
Q ss_pred ecCccCC-CCCcEEEecC-CCchhhhhHHHHHhCCCEEEE
Q 023678 93 ELTEDSF-DGVDIALFSA-GGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 93 ~~d~~~~-~~~DvVf~a~-g~~~s~~~~~~~~~aG~~VID 130 (279)
+.+ +.| .+||++|-|. +..+..+.++++.+.||++|-
T Consensus 111 ~~~-~~~~~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~ 149 (255)
T d1bgva1 111 PGE-KPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYI 149 (255)
T ss_dssp ETC-CGGGSCCSEEECCSCTTCBCHHHHHHHHHTTCCEEE
T ss_pred chh-hcccccccEEeeccccccccHHHHHhhhhcCceEEe
Confidence 211 223 4899998774 567788899999999998773
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=87.23 E-value=0.33 Score=38.12 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=25.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
|||+||| .|++|-++...|.+.+ +..++.++.
T Consensus 1 ~KVvIIG-gG~~G~e~A~~l~~~~-~~~~V~v~~ 32 (198)
T d1nhpa1 1 MKVIVLG-SSHGGYEAVEELLNLH-PDAEIQWYE 32 (198)
T ss_dssp CEEEEEC-SSHHHHHHHHHHHHHC-TTSEEEEEE
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcC-CCCeEEEEe
Confidence 7899999 5999999999987653 667776664
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.11 E-value=0.23 Score=39.85 Aligned_cols=95 Identities=12% Similarity=0.206 Sum_probs=56.3
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cc---eee----e---CC----------------ce
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK---QLS----F---QD----------------KA 88 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~---~~~----~---~~----------------~~ 88 (279)
|...||+|||| |..|+.+..+++.+|| ++.++ .++.. .+ .+. . .+ ..
T Consensus 2 ~~IkkvaViGa-G~mG~~iA~~~a~~G~---~V~l~-D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (192)
T d1f0ya2 2 IIVKHVTVIGG-GLMGAGIAQVAAATGH---TVVLV-DQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 76 (192)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred ceeEEEEEECc-CHHHHHHHHHHHhCCC---cEEEE-ECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh
Confidence 33469999995 9999999999998866 34444 22210 00 000 0 00 01
Q ss_pred eEEeecC-ccCCCCCcEEEecCCCchh--hhhHHHH---HhCCCEEEEcCCCCCC
Q 023678 89 YTVEELT-EDSFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFRM 137 (279)
Q Consensus 89 ~~v~~~d-~~~~~~~DvVf~a~g~~~s--~~~~~~~---~~aG~~VIDlS~~~R~ 137 (279)
+... .+ .+.+.++|+|+.|.+-... +++..++ ...++.+-.+++.+..
T Consensus 77 i~~~-~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i 130 (192)
T d1f0ya2 77 IATS-TDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQI 130 (192)
T ss_dssp EEEE-SCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCH
T ss_pred cccc-chhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccccc
Confidence 1221 12 2336789999999987755 2233332 3567788888888754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.82 E-value=0.11 Score=40.68 Aligned_cols=86 Identities=21% Similarity=0.144 Sum_probs=49.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee---CCceeEEeecCccC-------C--CCCcEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF---QDKAYTVEELTEDS-------F--DGVDIAL 106 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~---~~~~~~v~~~d~~~-------~--~~~DvVf 106 (279)
.-+|+|+|+ |-+|...+.++...+ ... +.+.+++. .+ +.. -+.+..+ +.+.++ + .++|+||
T Consensus 29 g~~VlI~G~-G~iG~~~~~~ak~~g--~~~-v~~~~~~~-~k-~~~a~~~Ga~~~i-~~~~~~~~~~i~~~t~gg~D~vi 101 (174)
T d1f8fa2 29 ASSFVTWGA-GAVGLSALLAAKVCG--ASI-IIAVDIVE-SR-LELAKQLGATHVI-NSKTQDPVAAIKEITDGGVNFAL 101 (174)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHHHT--CSE-EEEEESCH-HH-HHHHHHHTCSEEE-ETTTSCHHHHHHHHTTSCEEEEE
T ss_pred CCEEEEeCC-CHHHhhhhhcccccc--cce-eeeeccHH-HH-HHHHHHcCCeEEE-eCCCcCHHHHHHHHcCCCCcEEE
Confidence 468999997 999999998887653 223 33333221 11 110 1112122 111111 1 3689999
Q ss_pred ecCCCchhhhhHHHHHhCCCEEEEc
Q 023678 107 FSAGGSISKKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 107 ~a~g~~~s~~~~~~~~~aG~~VIDl 131 (279)
.|+|...+.+.+.++++.|-+++=.
T Consensus 102 d~~G~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 102 ESTGSPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp ECSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred EcCCcHHHHHHHHhcccCceEEEEE
Confidence 9999887777766666665565533
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.77 E-value=0.11 Score=41.29 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=51.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCc--hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~--~s~~ 116 (279)
.++|.|+| +|++|+.+.+.+..-+ .++.+. ....-+.+.....-+.+..++ +.+..+|+++.|+|.. +.++
T Consensus 24 Gk~v~V~G-yG~iG~g~A~~~rg~G---~~V~v~--e~dp~~al~A~~dG~~v~~~~-~a~~~adivvtaTGn~~vI~~e 96 (163)
T d1li4a1 24 GKVAVVAG-YGDVGKGCAQALRGFG---ARVIIT--EIDPINALQAAMEGYEVTTMD-EACQEGNIFVTTTGCIDIILGR 96 (163)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEE--CSCHHHHHHHHHTTCEECCHH-HHTTTCSEEEECSSCSCSBCHH
T ss_pred CCEEEEec-cccccHHHHHHHHhCC---CeeEee--ecccchhHHhhcCceEeeehh-hhhhhccEEEecCCCccchhHH
Confidence 46899999 8999999999997653 343332 111111111100012232222 3345789999999963 4444
Q ss_pred hHHHHHhCCCEEEEcCCCCC
Q 023678 117 FGPIAVEKGSIVVDNSSAFR 136 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~~~R 136 (279)
..++ .+.|+.+. +.+.|.
T Consensus 97 h~~~-MKdgaIL~-N~Ghfd 114 (163)
T d1li4a1 97 HFEQ-MKDDAIVC-NIGHFD 114 (163)
T ss_dssp HHTT-CCTTEEEE-ECSSST
T ss_pred HHHh-ccCCeEEE-Eecccc
Confidence 4433 46677766 667773
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=86.75 E-value=0.31 Score=38.73 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=24.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|||+|||| |..|-.....|.++|| ++.++
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~---~V~vl 29 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGT---DAVLL 29 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTC---CEEEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCC---CEEEE
Confidence 68999995 9999999999999876 34455
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=86.67 E-value=0.14 Score=40.43 Aligned_cols=88 Identities=24% Similarity=0.229 Sum_probs=50.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee---CCceeEEee--cCc-c---C---CCCCcEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF---QDKAYTVEE--LTE-D---S---FDGVDIAL 106 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~---~~~~~~v~~--~d~-~---~---~~~~DvVf 106 (279)
.-+|+|+|+ |-+|...++.+...+. .+++.+. ++. ++... -+.+..+.. -+. + . =.++|+||
T Consensus 28 g~~VlI~Ga-G~vGl~~~q~ak~~Ga--~~Vi~~d-~~~--~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vi 101 (174)
T d1jqba2 28 GSSVVVIGI-GAVGLMGIAGAKLRGA--GRIIGVG-SRP--ICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVI 101 (174)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHTTTC--SCEEEEC-CCH--HHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEE
T ss_pred CCEEEEEcC-Ccchhhhhhhhhcccc--ccccccc-chh--hhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEE
Confidence 467999996 9999999998876532 2343342 211 11111 111222211 111 0 1 13689999
Q ss_pred ecCCCchhhhhHHHHHhCCCEEEEcC
Q 023678 107 FSAGGSISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 107 ~a~g~~~s~~~~~~~~~aG~~VIDlS 132 (279)
.|+|...+.+.+-++++.|-.++-.+
T Consensus 102 d~~g~~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 102 MAGGGSETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp ECSSCTTHHHHHHHHEEEEEEEEECC
T ss_pred EccCCHHHHHHHHHHHhcCCEEEEEe
Confidence 99998766666656666666666443
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=86.33 E-value=0.21 Score=39.91 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=45.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCCCCCcEEEecCCCchh-hh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSFDGVDIALFSAGGSIS-KK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s-~~ 116 (279)
..+|+|+| .|.+|+++.++|..- ..++... ++......... ...+.. .++ .+.+..+|+|+.++|-+.. +.
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~f---g~~v~~~-d~~~~~~~~~~-~~~~~~~~~l-~~~l~~sD~v~~~~plt~~T~~ 116 (188)
T d2naca1 44 AMHVGTVA-AGRIGLAVLRRLAPF---DVHLHYT-DRHRLPESVEK-ELNLTWHATR-EDMYPVCDVVTLNCPLHPETEH 116 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGG---TCEEEEE-CSSCCCHHHHH-HHTCEECSSH-HHHGGGCSEEEECSCCCTTTTT
T ss_pred ccceeecc-ccccchhhhhhhhcc---CceEEEE-eeccccccccc-cccccccCCH-HHHHHhccchhhcccccccchh
Confidence 47999999 799999999999753 2344444 33222111110 001111 111 2345789999998875433 11
Q ss_pred hH--HH--HHhCCCEEE
Q 023678 117 FG--PI--AVEKGSIVV 129 (279)
Q Consensus 117 ~~--~~--~~~aG~~VI 129 (279)
.. +. ..+.|+.+|
T Consensus 117 li~~~~l~~mk~ga~lI 133 (188)
T d2naca1 117 MINDETLKLFKRGAYIV 133 (188)
T ss_dssp CBSHHHHTTSCTTEEEE
T ss_pred hhHHHHHHhCCCCCEEE
Confidence 11 11 135667776
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.27 E-value=0.41 Score=39.53 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
+.++|.|.||++-+|+++.+.|.++|+
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~ 32 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA 32 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 457899999999999999999998753
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=86.00 E-value=0.49 Score=37.41 Aligned_cols=30 Identities=27% Similarity=0.561 Sum_probs=24.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..||+|||| |.+|-.....|.++++ ++.++
T Consensus 6 ~~kVvVIGa-GiaGl~~A~~L~~~G~---~V~vi 35 (268)
T d1c0pa1 6 QKRVVVLGS-GVIGLSSALILARKGY---SVHIL 35 (268)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE
T ss_pred CCcEEEECc-cHHHHHHHHHHHHCCC---CEEEE
Confidence 369999995 9999999999999865 44444
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=85.78 E-value=0.57 Score=39.76 Aligned_cols=39 Identities=18% Similarity=0.424 Sum_probs=27.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG 79 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G 79 (279)
+.||+||| .|..|-.++..|.+.+ ...+++++-.++..|
T Consensus 4 ~KrVaIIG-aG~sGl~~A~~L~~~~-~~~~v~vfEk~~~iG 42 (335)
T d2gv8a1 4 IRKIAIIG-AGPSGLVTAKALLAEK-AFDQVTLFERRGSPG 42 (335)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTT-CCSEEEEECSSSSSS
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHhC-CCCCEEEEECCCCCC
Confidence 57899999 5999999998887653 234666664444444
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=85.69 E-value=0.17 Score=41.03 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=47.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeE-EeecCccCCCCCcEEEecCCCchh-hh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYT-VEELTEDSFDGVDIALFSAGGSIS-KK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~-v~~~d~~~~~~~DvVf~a~g~~~s-~~ 116 (279)
..+|+|+| .|.+|+++.++|..- ..++.+. ++......... ..+. +.++ .+.+..+|+|..++|-... +.
T Consensus 49 gktvgIiG-~G~IG~~va~~l~~f---g~~v~~~-d~~~~~~~~~~--~~~~~~~~l-~~ll~~sD~i~~~~plt~~T~~ 120 (193)
T d1mx3a1 49 GETLGIIG-LGRVGQAVALRAKAF---GFNVLFY-DPYLSDGVERA--LGLQRVSTL-QDLLFHSDCVTLHCGLNEHNHH 120 (193)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTT---TCEEEEE-CTTSCTTHHHH--HTCEECSSH-HHHHHHCSEEEECCCCCTTCTT
T ss_pred CceEEEec-cccccccceeeeecc---ccceeec-cCcccccchhh--hccccccch-hhccccCCEEEEeecccccchh
Confidence 46999999 799999999999753 3565554 33221111100 0111 1111 1234678999988875433 22
Q ss_pred hH-HH---HHhCCCEEEEcC
Q 023678 117 FG-PI---AVEKGSIVVDNS 132 (279)
Q Consensus 117 ~~-~~---~~~aG~~VIDlS 132 (279)
+. .+ ..+.|+.+|-.|
T Consensus 121 li~~~~l~~mk~~a~lIN~s 140 (193)
T d1mx3a1 121 LINDFTVKQMRQGAFLVNTA 140 (193)
T ss_dssp SBSHHHHTTSCTTEEEEECS
T ss_pred hhhHHHHhccCCCCeEEecC
Confidence 21 11 235677777433
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.61 E-value=0.037 Score=44.31 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=20.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDR 62 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~ 62 (279)
-.|.|.||+|-||...+++....
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~ 54 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLL 54 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHT
T ss_pred CEEEEECCCchhhHHHHHHHHHc
Confidence 46999999999999999987655
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.60 E-value=0.57 Score=37.37 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=26.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+..||+||| .|..|-.....|.++|+ ++.++-
T Consensus 4 ~~~kViVIG-aG~aGL~aA~~L~~~G~---~V~VlE 35 (449)
T d2dw4a2 4 KTGKVIIIG-SGVSGLAAARQLQSFGM---DVTLLE 35 (449)
T ss_dssp CCCEEEEEC-CBHHHHHHHHHHHHTTC---EEEEEC
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhCCC---CEEEEe
Confidence 457899999 59999999999999865 555563
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=85.51 E-value=0.62 Score=39.74 Aligned_cols=37 Identities=16% Similarity=0.420 Sum_probs=28.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG 79 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G 79 (279)
.+||+||| +|..|......|.+.|+ ++.++-.+...|
T Consensus 2 ~KKI~IIG-aG~sGL~aA~~L~k~G~---~V~viEk~~~iG 38 (314)
T d2bi7a1 2 SKKILIVG-AGFSGAVIGRQLAEKGH---QVHIIDQRDHIG 38 (314)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTC---EEEEEESSSSSS
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhCCC---CEEEEECCCCCc
Confidence 47999999 59999999999998754 566665555454
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.92 E-value=0.12 Score=45.01 Aligned_cols=105 Identities=14% Similarity=0.156 Sum_probs=60.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee----CCceeEEeecCccCCCCCcEEEecCCCch
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF----QDKAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~----~~~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
+..+++|+| +|..++.-++.|..- +|.-++.++ +++.. +.-.+ ......+..-..+...++|+|++|+++..
T Consensus 124 ~~~~l~iiG-aG~QA~~~~~al~~~-~~i~~i~v~-~r~~e-~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~ 199 (320)
T d1omoa_ 124 NSSVFGFIG-CGTQAYFQLEALRRV-FDIGEVKAY-DVREK-AAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRK 199 (320)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHH-SCCCEEEEE-CSSHH-HHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSS
T ss_pred CccEEEEec-CcccHHHHHHHHHHH-hhhhhcccc-cCCHH-HHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcc
Confidence 456899999 799999999987653 365555444 54321 11111 01112222212234578999999998653
Q ss_pred hhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 114 s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
- -+-...++.|+.|+-.++ ++.+ -.|+..+.++
T Consensus 200 P-~~~~~~l~~G~hv~~iGs-~~p~------~~Eld~~~~~ 232 (320)
T d1omoa_ 200 P-VVKAEWVEEGTHINAIGA-DGPG------KQELDVEILK 232 (320)
T ss_dssp C-CBCGGGCCTTCEEEECSC-CSTT------CCCBCHHHHH
T ss_pred c-ccchhhcCCCCeEeecCC-cccc------ccccCHHHhh
Confidence 2 112234678998876555 3221 2466666666
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.87 E-value=0.27 Score=38.91 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|||+|+| .||||..+...++ ++| ++..+
T Consensus 1 MkI~ViG-lG~vGl~~a~~~a-~g~---~V~g~ 28 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLLS-LQN---EVTIV 28 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHHT-TTS---EEEEE
T ss_pred CEEEEEC-CChhHHHHHHHHH-CCC---cEEEE
Confidence 7899999 7999999886664 555 45444
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.62 E-value=0.52 Score=36.02 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=27.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG 79 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G 79 (279)
+.|.||| +|..|......|+++|+ ++.++-.+...|
T Consensus 6 yDviViG-aG~~Gl~~A~~La~~G~---~V~vlE~~~~~G 41 (297)
T d2bcgg1 6 YDVIVLG-TGITECILSGLLSVDGK---KVLHIDKQDHYG 41 (297)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred CCEEEEC-cCHHHHHHHHHHHHCCC---CEEEEcCCCCCC
Confidence 8899999 69999999999998765 455554444444
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.55 E-value=0.31 Score=38.66 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=51.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ecCcc-----CCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTED-----SFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d~~-----~~~~~DvVf~a~g~~ 112 (279)
-+|.|.||+|-||...+++.... ..+++...+....-......+.+..+. +...+ .-.++|+||.+.+..
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~---Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~ 109 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKR---GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR 109 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHT---TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTT
T ss_pred CEEEEEeccchHHHHHHHHHHHc---CCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCch
Confidence 57999999999999999988765 345555543222111111112222221 11111 114799999999877
Q ss_pred hhhhhHHHHHhCCCEEEEcCCC
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
.-.+.. ..++.|-+++.....
T Consensus 110 ~~~~~l-~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 110 TLATVL-SRMRYGGAVAVSGLT 130 (176)
T ss_dssp THHHHH-HTEEEEEEEEECSCC
T ss_pred hHHHHH-HHhCCCceEEEeecc
Confidence 554444 334556677766554
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=84.20 E-value=2.2 Score=29.80 Aligned_cols=84 Identities=10% Similarity=-0.056 Sum_probs=48.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce---eeeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ---LSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~---~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
|||-++|-.|.-=..|.+.|.++++ .+. .|.+..... +...+..+. ...+.+.+.+.|+|+....-.....
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~---~Vs--GSD~~~~~~t~~L~~~Gi~i~-~gh~~~~i~~~d~vV~SsAI~~~np 75 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGN---DVY--GSNIEETERTAYLRKLGIPIF-VPHSADNWYDPDLVIKTPAVRDDNP 75 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEE--EECSSCCHHHHHHHHTTCCEE-SSCCTTSCCCCSEEEECTTCCTTCH
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCC---eEE--EEeCCCChhHHHHHHCCCeEE-eeecccccCCCCEEEEecCcCCCCH
Confidence 6788888655444467788888765 221 132222211 111222221 2334556778898888766554555
Q ss_pred hHHHHHhCCCEEE
Q 023678 117 FGPIAVEKGSIVV 129 (279)
Q Consensus 117 ~~~~~~~aG~~VI 129 (279)
.+..|.+.|.+|.
T Consensus 76 el~~A~~~gIpv~ 88 (89)
T d1j6ua1 76 EIVRARMERVPIE 88 (89)
T ss_dssp HHHHHHHTTCCEE
T ss_pred HHHHHHHcCCCcc
Confidence 5677888998875
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=84.18 E-value=1 Score=35.11 Aligned_cols=87 Identities=21% Similarity=0.154 Sum_probs=49.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CCceeEEee--cCcc--------CCCCCcEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEE--LTED--------SFDGVDIALF 107 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~~~~~v~~--~d~~--------~~~~~DvVf~ 107 (279)
.-+|+|+|+ |-+|...+..+...+ ...+++. +.+..-..+.. -+.+..+.. .+.. .-.++|+||.
T Consensus 29 G~~VlV~G~-G~iGl~a~~~ak~~G--a~~Vi~~-d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie 104 (174)
T d1e3ia2 29 GSTCAVFGL-GCVGLSAIIGCKIAG--ASRIIAI-DINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLD 104 (174)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCEEEEECC-ChHHHHHHHHHHHhC--Cceeeee-ccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEE
Confidence 468999995 999999999887663 2233333 22211111111 122222221 1100 1247999999
Q ss_pred cCCCchhhhhHHHHHhC--CCEEE
Q 023678 108 SAGGSISKKFGPIAVEK--GSIVV 129 (279)
Q Consensus 108 a~g~~~s~~~~~~~~~a--G~~VI 129 (279)
|+|...+.+.+-+.+.. |..|+
T Consensus 105 ~~G~~~~~~~a~~~~~~g~G~~v~ 128 (174)
T d1e3ia2 105 CAGTAQTLKAAVDCTVLGWGSCTV 128 (174)
T ss_dssp SSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred ecccchHHHHHHHHhhcCCeEEEe
Confidence 99998877766666554 44444
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=83.87 E-value=0.34 Score=39.42 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=46.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CCceeEEeecCccCC-CCCcEEEe-cCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELTEDSF-DGVDIALF-SAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~~~~~v~~~d~~~~-~~~DvVf~-a~g~~~s~ 115 (279)
..+|+|-| .|.||+.+.+.|.+.| .+++.. +.. .+ .+.. ........+. .+.| .++|+.+- |++..+..
T Consensus 27 gk~v~IqG-~G~VG~~~A~~L~~~G---akvvv~-d~d-~~-~~~~~~~~g~~~~~~-~~~~~~~~DI~iPcA~~~~I~~ 98 (201)
T d1c1da1 27 GLTVLVQG-LGAVGGSLASLAAEAG---AQLLVA-DTD-TE-RVAHAVALGHTAVAL-EDVLSTPCDVFAPCAMGGVITT 98 (201)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEE-CSC-HH-HHHHHHHTTCEECCG-GGGGGCCCSEEEECSCSCCBCH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEe-cch-HH-HHHHHHhhcccccCc-cccccccceeeecccccccccH
Confidence 57999999 8999999999999875 344432 211 11 1110 0001122221 1223 47999885 46666777
Q ss_pred hhHHHHHhCCCEEE
Q 023678 116 KFGPIAVEKGSIVV 129 (279)
Q Consensus 116 ~~~~~~~~aG~~VI 129 (279)
+.++++ .|++|
T Consensus 99 ~~a~~i---~ak~i 109 (201)
T d1c1da1 99 EVARTL---DCSVV 109 (201)
T ss_dssp HHHHHC---CCSEE
T ss_pred HHHhhh---hhhee
Confidence 766654 67777
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=83.49 E-value=0.64 Score=36.47 Aligned_cols=72 Identities=19% Similarity=0.315 Sum_probs=40.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-C-ceeee-------CCceeEEeecCc-c----CCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-G-KQLSF-------QDKAYTVEELTE-D----SFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G-~~~~~-------~~~~~~v~~~d~-~----~~~~~Dv 104 (279)
..+|.|+|| |-+|+.++..|..++ .-++..+ .|+.. . +.... ......+.++.. + .+..+|+
T Consensus 18 ~k~vlIlGa-GGaarai~~al~~~g--~~~i~i~-nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di 93 (182)
T d1vi2a1 18 GKTMVLLGA-GGASTAIGAQGAIEG--LKEIKLF-NRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI 93 (182)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEE-ECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred CCEEEEECC-cHHHHHHHHHHhhcC--CceEeee-ccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccce
Confidence 368999995 777899998888873 3344444 34321 1 11110 011223334321 1 2357899
Q ss_pred EEecCCCchh
Q 023678 105 ALFSAGGSIS 114 (279)
Q Consensus 105 Vf~a~g~~~s 114 (279)
++-|++.+..
T Consensus 94 iIN~Tp~G~~ 103 (182)
T d1vi2a1 94 LTNGTKVGMK 103 (182)
T ss_dssp EEECSSTTST
T ss_pred eccccCCccc
Confidence 9999986643
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.43 E-value=0.54 Score=36.10 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=23.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCce
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR 67 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~ 67 (279)
..||+||| .|.+|-+....|.++|+..+
T Consensus 4 ~~kVaIIG-aGpaGl~aA~~l~~~G~~~V 31 (196)
T d1gtea4 4 SAKIALLG-AGPASISCASFLARLGYSDI 31 (196)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHTTCCCE
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHCCCCeE
Confidence 36899999 59999999999999877543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=83.39 E-value=0.2 Score=39.43 Aligned_cols=89 Identities=21% Similarity=0.232 Sum_probs=50.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ecCccC-----CCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTEDS-----FDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d~~~-----~~~~DvVf~a~g~~ 112 (279)
-.|.|.||+|-||...+++....+ .+++..++++..-..+...+.+..+. +...+. -.++|+||.+.+..
T Consensus 25 ~~VLV~gaaGgVG~~avQlAk~~G---a~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vgg~ 101 (167)
T d1tt7a2 25 GSVLVTGATGGVGGIAVSMLNKRG---YDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGK 101 (167)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHHT---CCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTH
T ss_pred CEEEEeCCcchHHHHHHHHHHHcC---CceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCcHH
Confidence 359999999999999999876653 35555554332211121112222222 111111 14789999999877
Q ss_pred hhhhhHHHHHhCCCEEEEcC
Q 023678 113 ISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS 132 (279)
...+.... ++.|-++|-..
T Consensus 102 ~~~~~~~~-l~~~G~iv~~G 120 (167)
T d1tt7a2 102 QLASLLSK-IQYGGSVAVSG 120 (167)
T ss_dssp HHHHHHTT-EEEEEEEEECC
T ss_pred HHHHHHHH-hccCceEEEee
Confidence 55554433 34444555443
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=83.21 E-value=0.88 Score=35.73 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=24.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+||+||| .|..|-.....|.+.|+ ++.++-
T Consensus 2 KkV~IIG-aG~aGL~aA~~La~~G~---~V~vlE 31 (373)
T d1seza1 2 KRVAVIG-AGVSGLAAAYKLKIHGL---NVTVFE 31 (373)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTSC---EEEEEC
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCC---CEEEEe
Confidence 6899999 59999999999998754 665664
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=83.11 E-value=1.1 Score=36.49 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
+.++|.|.||++-+|+++.+.|.+.|+
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~Ga 29 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEGA 29 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 457899999999999999999998753
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.01 E-value=0.22 Score=38.69 Aligned_cols=87 Identities=18% Similarity=0.253 Sum_probs=48.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee---CCceeEEeec-C-c------cCCCCCcEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF---QDKAYTVEEL-T-E------DSFDGVDIALF 107 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~---~~~~~~v~~~-d-~------~~~~~~DvVf~ 107 (279)
.-+|.|+|+ |.+|.-.+.++...+ ...++.. +++. . ++.+ .+.+..+..- + . ....++|+||.
T Consensus 33 g~~vli~Ga-G~vG~~~~~~a~~~g--~~~vv~~-~~~~-~-k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid 106 (172)
T d1h2ba2 33 GAYVAIVGV-GGLGHIAVQLLKVMT--PATVIAL-DVKE-E-KLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMD 106 (172)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHC--CCEEEEE-ESSH-H-HHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCEEEEeCC-ChHHHHHHHHHHhhc--Ccccccc-cchh-H-HHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEE
Confidence 357999995 999999999886653 2233333 3221 1 1111 1222222211 1 0 11246899999
Q ss_pred cCCCchhhhhHHHHHhCCCEEEEc
Q 023678 108 SAGGSISKKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 108 a~g~~~s~~~~~~~~~aG~~VIDl 131 (279)
|+|...+.+.+-.+++.|-+++-.
T Consensus 107 ~~g~~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 107 FVGSQATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp SSCCHHHHHHGGGGEEEEEEEEEC
T ss_pred ecCcchHHHHHHHHHhCCCEEEEE
Confidence 999887666655565666665533
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.30 E-value=0.59 Score=36.76 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY 66 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~ 66 (279)
|||+|||| |.+|......|.++++..
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~~v 26 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYHSV 26 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHTTT
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCc
Confidence 68999995 999999999998876543
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=81.78 E-value=0.75 Score=37.21 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
..||+||| +|..|-.....|.++|| ++.++-
T Consensus 30 pkkV~IIG-aG~aGLsaA~~L~~~G~---~V~vlE 60 (370)
T d2iida1 30 PKHVVIVG-AGMAGLSAAYVLAGAGH---QVTVLE 60 (370)
T ss_dssp CCEEEEEC-CBHHHHHHHHHHHHHTC---EEEEEC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCC---CEEEEe
Confidence 46999999 59999999999998865 555663
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=81.51 E-value=0.84 Score=37.64 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEE-EECcCcHHHHHHHHHHHcCCC
Q 023678 41 SVA-VVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 41 kVa-IiGATG~VG~eLl~lL~~~~~ 64 (279)
||+ |.||++-+|+++.+.|.++|.
T Consensus 2 KValITGas~GIG~aia~~la~~Ga 26 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF 26 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC
Confidence 664 559999999999999998753
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=81.37 E-value=0.29 Score=39.38 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=45.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCCCCCcEEEecCCCchh-hh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSFDGVDIALFSAGGSIS-KK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s-~~ 116 (279)
..+++|+| .|.+|+.+.+++..- ..++... ++.......... ..... .++ .+.+..+|+|..++|-... +.
T Consensus 47 g~tvgIiG-~G~IG~~va~~l~~f---g~~v~~~-d~~~~~~~~~~~-~~~~~~~~l-~~ll~~sD~v~l~~plt~~T~~ 119 (191)
T d1gdha1 47 NKTLGIYG-FGSIGQALAKRAQGF---DMDIDYF-DTHRASSSDEAS-YQATFHDSL-DSLLSVSQFFSLNAPSTPETRY 119 (191)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTT---TCEEEEE-CSSCCCHHHHHH-HTCEECSSH-HHHHHHCSEEEECCCCCTTTTT
T ss_pred ccceEEee-cccchHHHHHHHHhh---ccccccc-cccccccchhhc-ccccccCCH-HHHHhhCCeEEecCCCCchHhh
Confidence 47899999 799999999998754 3344444 222111110000 00111 111 1234678999988875432 22
Q ss_pred hHH-H---HHhCCCEEEEc
Q 023678 117 FGP-I---AVEKGSIVVDN 131 (279)
Q Consensus 117 ~~~-~---~~~aG~~VIDl 131 (279)
+.. + ..+.|+.+|-.
T Consensus 120 li~~~~l~~mk~~a~lIN~ 138 (191)
T d1gdha1 120 FFNKATIKSLPQGAIVVNT 138 (191)
T ss_dssp CBSHHHHTTSCTTEEEEEC
T ss_pred eecHHHhhCcCCccEEEec
Confidence 221 1 23467777733
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=81.15 E-value=1.2 Score=34.50 Aligned_cols=82 Identities=16% Similarity=0.080 Sum_probs=45.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEe--ecCc--c------CCCCCcEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVE--ELTE--D------SFDGVDIALF 107 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~--~~d~--~------~~~~~DvVf~ 107 (279)
.-+|+|+|+ |-+|...+..+...+ ..+++.+.+ ...-..+. ..+.+..+. +.|. + .-.++|++|.
T Consensus 28 G~~VlV~Ga-GgvGl~a~~~ak~~G--~~~Vi~~d~-~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid 103 (174)
T d1p0fa2 28 GSTCAVFGL-GGVGFSAIVGCKAAG--ASRIIGVGT-HKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVE 103 (174)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECS-CGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCEEEEECC-CchhHHHHHHHHHcC--CceeeccCC-hHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEE
Confidence 468999996 899999998887663 334444422 21111111 112222221 1110 0 1147899999
Q ss_pred cCCCchhhhhHHHHHhC
Q 023678 108 SAGGSISKKFGPIAVEK 124 (279)
Q Consensus 108 a~g~~~s~~~~~~~~~a 124 (279)
|++...+.+..-.++..
T Consensus 104 ~~g~~~~~~~~~~~~~~ 120 (174)
T d1p0fa2 104 CAGRIETMMNALQSTYC 120 (174)
T ss_dssp CSCCHHHHHHHHHTBCT
T ss_pred cCCCchHHHHHHHHHHH
Confidence 99987766655554443
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=81.02 E-value=0.45 Score=37.00 Aligned_cols=73 Identities=14% Similarity=0.091 Sum_probs=36.6
Q ss_pred CEEEEECcCcHHHHHHH-HHH-H-cCCCCceEEEEEeecCCCCceee-------eCCceeEEeecCccCCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFL-SVL-S-DRDFPYRSIKMLASKRSAGKQLS-------FQDKAYTVEELTEDSFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl-~lL-~-~~~~p~~~l~~l~s~~s~G~~~~-------~~~~~~~v~~~d~~~~~~~DvVf~a~ 109 (279)
|||+|+|| |-+|..+. ..| . ...++..+++++.-.+....... .....+.+..-+.+++.++|+|+.+.
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita 79 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF 79 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEec
Confidence 68999997 54553333 222 2 22234567777732111000000 01112222221234568999999998
Q ss_pred CCch
Q 023678 110 GGSI 113 (279)
Q Consensus 110 g~~~ 113 (279)
+...
T Consensus 80 ~~~~ 83 (162)
T d1up7a1 80 RPGG 83 (162)
T ss_dssp CTTH
T ss_pred ccCC
Confidence 8764
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=80.99 E-value=1.4 Score=32.24 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=24.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..||+||| .|++|-|+...|.+++ .++.++
T Consensus 30 ~~~vvIIG-gG~iG~E~A~~l~~~g---~~Vtli 59 (121)
T d1d7ya2 30 QSRLLIVG-GGVIGLELAATARTAG---VHVSLV 59 (121)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEE
T ss_pred CCeEEEEC-cchhHHHHHHHhhccc---ceEEEE
Confidence 46899999 5999999999998764 344444
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=80.64 E-value=1.3 Score=36.02 Aligned_cols=89 Identities=13% Similarity=0.179 Sum_probs=54.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe---------------ecCCCCceeee--------CCceeEEeecC-
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA---------------SKRSAGKQLSF--------QDKAYTVEELT- 95 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~---------------s~~s~G~~~~~--------~~~~~~v~~~d- 95 (279)
.||+|+|+ |-+|.+++..|...|.. ++.++- +.+..|++-.. ...++.+...+
T Consensus 31 ~~VliiG~-GglGs~va~~La~~Gvg--~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~ 107 (247)
T d1jw9b_ 31 SRVLIVGL-GGLGCAASQYLASAGVG--NLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA 107 (247)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCS--EEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred CCEEEECC-CHHHHHHHHHHHHcCCC--eEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhh
Confidence 58999995 88999999999988544 444441 11122322110 01223333221
Q ss_pred ---c----cCCCCCcEEEecCCCchhhhhHHHHH-hCCCEEEEc
Q 023678 96 ---E----DSFDGVDIALFSAGGSISKKFGPIAV-EKGSIVVDN 131 (279)
Q Consensus 96 ---~----~~~~~~DvVf~a~g~~~s~~~~~~~~-~aG~~VIDl 131 (279)
. ..+.+.|+++.|++...++.+..++. +.+..+|..
T Consensus 108 ~~~~~~~~~~~~~~divid~~d~~~~~~~in~~~~~~~ip~i~g 151 (247)
T d1jw9b_ 108 LLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSG 151 (247)
T ss_dssp CCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred hhhhccccccccccceeeeccchhhhhhhHHHHHHHhCCCcccc
Confidence 1 11357899999999888877776654 678888754
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.31 E-value=0.71 Score=36.11 Aligned_cols=76 Identities=8% Similarity=0.066 Sum_probs=41.6
Q ss_pred CCEEEEECc-CcHHHHHHHHHHHcC-CCCceEEEEEeecCCC--Cceeee--------CCceeEEeec-C-ccCCCCCcE
Q 023678 39 APSVAVVGV-TGAVGQEFLSVLSDR-DFPYRSIKMLASKRSA--GKQLSF--------QDKAYTVEEL-T-EDSFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGA-TG~VG~eLl~lL~~~-~~p~~~l~~l~s~~s~--G~~~~~--------~~~~~~v~~~-d-~~~~~~~Dv 104 (279)
++||+|||| +.+++..+..++... .++..+++++--.+.. ++.+.. .+.+..+... | .+++.++|+
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDv 80 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 80 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCE
Confidence 379999997 234556666666554 2334577666322211 111110 1223344322 2 244689999
Q ss_pred EEecCCCchh
Q 023678 105 ALFSAGGSIS 114 (279)
Q Consensus 105 Vf~a~g~~~s 114 (279)
|+.+.+....
T Consensus 81 Vv~ta~~~~~ 90 (169)
T d1s6ya1 81 VTTQFRVGGL 90 (169)
T ss_dssp EEECCCTTHH
T ss_pred EEEccccCCC
Confidence 9999987754
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=80.11 E-value=0.32 Score=37.69 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=46.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccC----------CCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS----------FDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~----------~~~~DvVf~a~ 109 (279)
-+|.|.||+|-+|..++++....+ .+++...+++..-+....-+.+..+ +...++ =.++|+||.|.
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~G---a~Vi~~~~s~~k~~~~~~lGa~~vi-~~~~~d~~~~v~~~t~g~g~d~v~d~~ 105 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALG---AKLIGTVGTAQKAQSALKAGAWQVI-NYREEDLVERLKEITGGKKVRVVYDSV 105 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHT---CEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred CEEEEEccccccchHHHHHHHHhC---CeEeecccchHHHHHHHhcCCeEEE-ECCCCCHHHHHHHHhCCCCeEEEEeCc
Confidence 589999999999999999887653 3554443221100001111222222 211111 13679999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcC
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS 132 (279)
+..............| +++-..
T Consensus 106 g~~~~~~~~~~l~~~G-~~v~~g 127 (179)
T d1qora2 106 GRDTWERSLDCLQRRG-LMVSFG 127 (179)
T ss_dssp CGGGHHHHHHTEEEEE-EEEECC
T ss_pred cHHHHHHHHHHHhcCC-eeeecc
Confidence 8765444433333334 444333
|