Citrus Sinensis ID: 023707

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MPVTTCTSSLYLPLSLSSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTSTDQSVFDLLKHPTQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSFISCQIAKCIMIYSGGCTNGKLIKGRKTLLFSVHQSPLFAYFYLVIASSSLLVLTY
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccEEcccccEEEEEcccHHHHHHHHHHHcccEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccEEEEEEEcccHHHHHHHHHHHHccEEEEcc
Coil and Loop (DISEMBL)
mpvttctsslylplslsssrvrasfdtqqrlsynpnaprkikkpplnlntnsnsnksdvaiakpptstvtptstdqsvfdllkhptqgvvanldesymgyerwlpnppkvgkprsvFNAASLAYIGDCIYELYArrhflfpplsieeyNNRVMAVVRCETQDALLQKLLNdsylsaeerDVVRWgknvgsantrtKRRAGAAVYNRASSLETLVSILVPCFSFISCQIAKCIMIysggctngklikGRKTLLFSVHQSPLFAYFYLVIASSSLLVLTY
Flexible Loop (DISEMBL)
mpvttctsslylplslsssrVRASfdtqqrlsynpnaprkikkpplnlntnsnsnksdvaiakpptstvtpTSTDQSVFDLLKHPTQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDsylsaeerdvvrwgknvgsantrtkrragaavynrASSLETLVSILVPCFSFISCQIAKCIMIYSGGCTNGKLIKGRKTLLFSVHQSPLFAYFYLVIASSSLLVLTY
Low Complexity Region (SEG)
MPVTTCTsslylplslsssRVRASFDTQQRLSYNPNAPRKIkkpplnlntnsnsnksDVAIAKpptstvtptstDQSVFDLLKHPTQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSFISCQIAKCIMIYSGGCTNGKLIKGRKTLLFSVHQSPLFAYFYLVIASSSLLVLTY
Disordered region (IsUnstruct)
*****************************************************************************VFDLLKHPTQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSFISCQIAKCIMIYSGGCTNGKLIKGRKTLLFSVHQSPLFAYFYLVIASSSLLVL**
Disordered Region (DISOPRED)
*********LYLPLSLSSSRVRASFDTQQRLSY*******************************************SVF*******************GYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKN***************VYNRASSLETLVSILVPCFSFISCQIAKCIMIYS***************LFSVHQSPLFAYFYLVIASSSLLVLTY
Disordered Region (DISEMBL)
*********LYLPLSLSSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAK************QSVFDLLKHPTQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSFISCQIAKCIMIYSGGCTNGKLIKGRKTLLFSVHQSPLFAYFYLVIASSSLLVLTY
Disordered Region (DISPRO)
*PVTTCTSSLYLPLSLSSSRVRASFDTQQRLSYNPNAPRKIKK***********************************************ANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGS*NTRTKRRAGAAVYNRASSLETLVSILVPCFSFISCQIAKCIMIYSGGCTNGKLIKGRKTLLFSVHQSPLFAYFYLVIASSSLLVLTY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPVTTCTSSLYLPLSLSSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTSTDQSVFDLLKHPTQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSFISCQIAKCIMIYSGGCTNGKLIKGRKTLLFSVHQSPLFAYFYLVIASSSLLVLTY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	278	2.2.26 [Sep-21-2011]
P74327	143	Mini-ribonuclease 3 OS=Sy	N/A	no	0.330	0.643	0.453	4e-13
Q8DLQ0	151	Mini-ribonuclease 3 OS=Th	yes	no	0.377	0.695	0.348	2e-10
Q05370	146	Mini-ribonuclease 3 OS=Sy	N/A	no	0.330	0.630	0.350	3e-08
Q5N0K8	138	Mini-ribonuclease 3 OS=Sy	yes	no	0.341	0.688	0.38	2e-07
Q7NDQ2	135	Mini-ribonuclease 3 OS=Gl	yes	no	0.330	0.681	0.340	4e-07
O31418	143	Mini-ribonuclease 3 OS=Ba	yes	no	0.374	0.727	0.289	4e-06
Q2RFM4	127	Mini-ribonuclease 3 OS=Mo	yes	no	0.334	0.732	0.316	1e-05
Q250Q5	157	Mini-ribonuclease 3 OS=De	yes	no	0.352	0.624	0.330	8e-05
A9NEJ0	125	Mini-ribonuclease 3 OS=Ac	yes	no	0.395	0.88	0.279	0.0007

>sp|P74327|MRNC_SYNY3 Mini-ribonuclease 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mrnC PE=3 SV=1

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 5/97 (5%)

Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
           +LAY+GD ++ELY R  +LFPP  I +++ RV+A VR E Q  +L  LL    L+  E++
Sbjct: 29  ALAYLGDAVFELYVRCCYLFPPRRIGDFHRRVVAQVRAEQQAQILTTLL--PQLTDPEKE 86

Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
            VR G+N   A T T RRA   +Y  AS LETL+  L
Sbjct: 87  WVRRGRN---AATSTSRRANPELYQAASGLETLLGYL 120

Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: -

>sp|Q8DLQ0|MRNC_THEEB Mini-ribonuclease 3 OS=Thermosynechococcus elongatus (strain BP-1) GN=mrnC PE=3 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 106 NPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALL 165
            PP +  P      A+LAY GD +YEL+ R  FL PP  I  Y+ +V+A VR E+Q   +
Sbjct: 11  QPPTI--PAHQLPPAALAYFGDAVYELFIRLLFLTPPQRINAYHRQVVAHVRAESQARYM 68

Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
             L    Y +  ER + R G+N  +      +R  A +Y +A+  E L+  L
Sbjct: 69  DFLWE--YCTETERSIFRQGRNAAADG---PKRVAAKIYRQATGFEALLGYL 115

Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q05370|MRNC_SYNP1 Mini-ribonuclease 3 OS=Synechococcus sp. (strain PCC 6716) GN=mrnC PE=3 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
           +LAY GD +YEL+ R  FL PP  I  Y+++V+A VR E+Q   +  L    + +A E  
Sbjct: 26  ALAYFGDAVYELFIRFIFLTPPQRINAYHHQVVAHVRAESQARYMDILW--PHCTAAELT 83

Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
           + R G+N  +      +R  A +Y +A+  E L+  L
Sbjct: 84  IFRQGRNAAADG---PKRVPAKIYRQATGFEALLGYL 117

Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even if ribonuclease 3 (Rnc) is inactivated; Rnc processes 30S rRNA into smaller rRNA precursors.

Synechococcus sp. (strain PCC 6716) (taxid: 32048)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q5N0K8|MRNC_SYNP6 Mini-ribonuclease 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=mrnC PE=3 SV=2

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
           +LAY+GD +YE + R   L P     + +  V+  VR E Q  LL  LL     +AEE +
Sbjct: 27  ALAYLGDALYEFHVRLRLLLPAQRSHQVHQSVVGAVRAERQAELLVSLLPLL--TAEELE 84

Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPC 220
           +VR G+N   A  R  RR     Y +A+ LETL+  L  C
Sbjct: 85  IVRRGRN---AAGRVPRRLTGEYYQQATGLETLLGYLYLC 121

Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q7NDQ2|MRNC_GLOVI Mini-ribonuclease 3 OS=Gloeobacter violaceus (strain PCC 7421) GN=mrnC PE=3 SV=2

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
           +LAY+GD ++EL+ R   L PP  ++  +   +A VR   Q  L   L    +L+ EE D
Sbjct: 13  ALAYLGDAVWELHVRTRVLLPPRRLQWLHGDTVACVRASAQAKLATCL--SPHLTVEEAD 70

Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
            +R G+N G       RR   A Y  A++ E L+  L
Sbjct: 71  WLRRGRNAGGT---VPRRLDPATYRLATAFEALLGYL 104

Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors.

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|O31418|MRNC_BACSU Mini-ribonuclease 3 OS=Bacillus subtilis (strain 168) GN=mrnC PE=1 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)

Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
           K     N  +LAYIGD I+E+Y R H L    +   + + +   +V  ++Q  +L  L N
Sbjct: 8   KDSKQLNGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQN 67

Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
            S+ + EE  V++ G+N  S    T +      Y  +++ E L+  L
Sbjct: 68  QSFFTEEEEAVLKRGRNAKSGT--TPKNTDVQTYRYSTAFEALLGYL 112

Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors. Cleaves more efficiently on assembled 50S ribosomal subunits. Cleavage is strongly stimulated by ribosomal protein L3 (RplC); 20-30% DMSO can replace RplC, suggesting RplC may alter rRNA conformation.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q2RFM4|MRNC_MOOTA Mini-ribonuclease 3 OS=Moorella thermoacetica (strain ATCC 39073) GN=mrnC PE=3 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 5/98 (5%)

Query: 121 SLAYIGDCIYELYARRHFLF-PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
           +LAY+GD +YEL  R H +   P   E+ +   +  VR   Q  ++  L  + YL+  E+
Sbjct: 11  ALAYVGDAVYELLVRAHLVGRGPAKPEQLHREALKYVRATAQARVVPAL--EEYLTPAEK 68

Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
           D++R G+N    +    R A  A Y+ +++LE+L+  L
Sbjct: 69  DILRRGRNARPGH--LPRTAAPAEYHSSTALESLLGYL 104

Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q250Q5|MRNC_DESHY Mini-ribonuclease 3 OS=Desulfitobacterium hafniense (strain Y51) GN=mrnC PE=3 SV=1

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 113 PRSV--FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLL 169
           PRS    NA +LAY+GD +YEL+ R H L      + E +      VR  TQ  LL  +L
Sbjct: 2   PRSWQEMNALTLAYLGDVVYELWVRTHLLNNGYEKVNELHRLATQYVRAGTQAKLLHHIL 61

Query: 170 NDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVS 215
              +L  +E  VV  G+N    + ++        Y  A+  E LV 
Sbjct: 62  --PHLDEQELSVVHRGRNAKGGHPKS---TDVVTYRYATGFEALVG 102

Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors.

Desulfitobacterium hafniense (strain Y51) (taxid: 138119)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|A9NEJ0|MRNC_ACHLI Mini-ribonuclease 3 OS=Acholeplasma laidlawii (strain PG-8A) GN=mrnC PE=3 SV=1

 Score = 44.7 bits (104), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 8/118 (6%)

Query: 117 FNAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
            N  +LAY+GD  YEL  R++ +   + ++ + +   + +   E Q +++   L+   LS
Sbjct: 1   MNGLALAYLGDAYYELEIRKYLITQGIRNVGKLHTEKVRLASNEAQASIMNYFLSLEILS 60

Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSILVPCFSFISCQIAKCIM 233
            EE D  + G+N  S N+R  ++     Y +A+  E+L+  L    S I  Q AK ++
Sbjct: 61  EEEIDAYKKGRNK-SHNSR--KQMDMVTYQQATGFESLIGYL----SIIDEQRAKDLI 111

Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors.

Acholeplasma laidlawii (strain PG-8A) (taxid: 441768)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
255572959	248	RNA binding protein, putative [Ricinus c	0.676	0.758	0.693	2e-72
118488084	246	unknown [Populus trichocarpa]	0.697	0.788	0.704	1e-69
224128634	246	predicted protein [Populus trichocarpa]	0.697	0.788	0.699	3e-69
449458177	245	PREDICTED: uncharacterized protein LOC10	0.715	0.812	0.642	4e-66
351723013	240	uncharacterized protein LOC100527214 [Gl	0.654	0.758	0.643	5e-65
225442262	233	PREDICTED: uncharacterized protein LOC10	0.683	0.815	0.628	7e-64
358344607	279	hypothetical protein MTR_040s0004 [Medic	0.726	0.724	0.591	2e-63
124360401	223	Ribonuclease III [Medicago truncatula]	0.715	0.892	0.6	2e-63
357454675	258	hypothetical protein MTR_2g100220 [Medic	0.723	0.779	0.594	2e-63
79366424	237	Ribonuclease III-like protein [Arabidops	0.701	0.822	0.614	2e-62

>gi|255572959|ref|XP_002527410.1| RNA binding protein, putative [Ricinus communis] gi|223533220|gb|EEF34976.1| RNA binding protein, putative [Ricinus communis]

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 140/202 (69%), Positives = 161/202 (79%), Gaps = 14/202 (6%)

Query: 21  VRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTP---TSTDQS 77
           VRAS+DTQQRL+YNPNAPRK  K     N  S  N     ++ PP +T +P   T T QS
Sbjct: 16  VRASWDTQQRLTYNPNAPRKHTK-----NPTSQPN----TLSLPPPTTTSPLSVTVTTQS 66

Query: 78  VFDLLKHPT--QGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR 135
           V +LLK  T  QGV+  LD++Y+GYERW+P PPKV KPRSV+NAA+LAYIGD IYELYAR
Sbjct: 67  VSNLLKRNTTPQGVMKKLDDTYLGYERWMPTPPKVEKPRSVYNAATLAYIGDSIYELYAR 126

Query: 136 RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195
           RHFLFPPLSIEEYN+RVM+VVRCE QDALL KLLND++LS EERDV+RWGKN+ SA TRT
Sbjct: 127 RHFLFPPLSIEEYNDRVMSVVRCEAQDALLHKLLNDNFLSKEERDVLRWGKNIASAKTRT 186

Query: 196 KRRAGAAVYNRASSLETLVSIL 217
           K+RAGAAVYNRASSLETLV  L
Sbjct: 187 KKRAGAAVYNRASSLETLVGYL 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488084|gb|ABK95862.1| unknown [Populus trichocarpa]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/203 (70%), Positives = 158/203 (77%), Gaps = 9/203 (4%)

Query: 18  SSRVR---ASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTST 74
           S RVR   AS DTQQRLSYNPNAP   K P  NLN   N N    + A  P+STVT T+ 
Sbjct: 14  SRRVRVRAASVDTQQRLSYNPNAP---KNPFKNLNPKPN-NFVPTSTAPAPSSTVTLTA- 68

Query: 75  DQSVFDLLKHPTQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYA 134
            Q+V  LLK  T  V   L++SY+GYERWLP+PPKV KPRSVFNAA+LAYIGD I+ELYA
Sbjct: 69  -QTVSGLLKRTTVIVQEQLNDSYLGYERWLPSPPKVEKPRSVFNAATLAYIGDSIFELYA 127

Query: 135 RRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTR 194
           RRHFLFPPLSIEE+N+RVMAVVRCE QDALLQKLLND+YLS EER ++RWGKNVGS  TR
Sbjct: 128 RRHFLFPPLSIEEHNDRVMAVVRCEAQDALLQKLLNDNYLSEEERLILRWGKNVGSTKTR 187

Query: 195 TKRRAGAAVYNRASSLETLVSIL 217
           TKRR G AVYNRASSLETLV  L
Sbjct: 188 TKRRVGVAVYNRASSLETLVGFL 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128634|ref|XP_002329052.1| predicted protein [Populus trichocarpa] gi|222839723|gb|EEE78046.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 142/203 (69%), Positives = 158/203 (77%), Gaps = 9/203 (4%)

Query: 18  SSRVR---ASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTST 74
           S RV+   AS DTQQRLSYNPNAP   K P  NLN   N N    + A  P+STVT T+ 
Sbjct: 14  SRRVKVRAASVDTQQRLSYNPNAP---KNPFKNLNPKPN-NFVPTSTAPAPSSTVTLTA- 68

Query: 75  DQSVFDLLKHPTQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYA 134
            Q+V  LLK  T  V   L++SY+GYERWLP+PPKV KPRSVFNAA+LAYIGD I+ELYA
Sbjct: 69  -QTVSGLLKRTTVIVQEQLNDSYLGYERWLPSPPKVEKPRSVFNAATLAYIGDSIFELYA 127

Query: 135 RRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTR 194
           RRHFLFPPLSIEE+N+RVMAVVRCE QDALLQKLLND+YLS EER ++RWGKNVGS  TR
Sbjct: 128 RRHFLFPPLSIEEHNDRVMAVVRCEAQDALLQKLLNDNYLSEEERLILRWGKNVGSTKTR 187

Query: 195 TKRRAGAAVYNRASSLETLVSIL 217
           TKRR G AVYNRASSLETLV  L
Sbjct: 188 TKRRVGVAVYNRASSLETLVGFL 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458177|ref|XP_004146824.1| PREDICTED: uncharacterized protein LOC101205919 [Cucumis sativus]

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 135/210 (64%), Positives = 162/210 (77%), Gaps = 11/210 (5%)

Query: 14  LSLSSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTS 73
           LS +S+ + AS+DTQQRLSYNPNAPR   K P + + +  S  +  AI      T T   
Sbjct: 4   LSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNAIL-----TATNIR 58

Query: 74  TDQSVFDLL--KHPTQGVVANLDES---YMGYERWLPNPPKVGKPRSVFNAASLAYIGDC 128
           T+Q V DLL  ++P+      L+E    Y+GY++WLP+PPKV KPRSVFNAASLAYIGDC
Sbjct: 59  TNQIVSDLLNRRNPSSIEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDC 118

Query: 129 IYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNV 188
           IYELYARRHFLFPPLSIEEYN+RVMAVVRCE QD LLQKLLND++L+  ERD++RWGKNV
Sbjct: 119 IYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNV 178

Query: 189 GSAN-TRTKRRAGAAVYNRASSLETLVSIL 217
           GS++ TRTK+RAGAAVYNRASSLETL+  L
Sbjct: 179 GSSSKTRTKKRAGAAVYNRASSLETLIGYL 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723013|ref|NP_001236496.1| uncharacterized protein LOC100527214 [Glycine max] gi|255631798|gb|ACU16266.1| unknown [Glycine max]

 Score =  253 bits (647), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 130/202 (64%), Positives = 151/202 (74%), Gaps = 20/202 (9%)

Query: 21  VRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTSTDQSVFD 80
           VRAS+DTQQRL YNPNAPRK+K               +  +A P  +       +Q + D
Sbjct: 16  VRASWDTQQRLPYNPNAPRKLK---------------NNIVATPTPTPPITRKREQYISD 60

Query: 81  LLKH----PTQGVVANL-DESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR 135
           LLK     PT G +  + DE+Y+GYE+WLP PPKV KPRSVFNAA+LAYIGDCIYELYAR
Sbjct: 61  LLKRATPLPTIGHIEEVQDETYLGYEKWLPTPPKVVKPRSVFNAATLAYIGDCIYELYAR 120

Query: 136 RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195
           RHFLFPPLSIEEYN+RVMAVVRCE QDALLQKLL  ++LS +ERDV+RWGKN+ S  T+T
Sbjct: 121 RHFLFPPLSIEEYNDRVMAVVRCEAQDALLQKLLESNFLSDQERDVLRWGKNIVSNKTKT 180

Query: 196 KRRAGAAVYNRASSLETLVSIL 217
           K+RAGAAVYNRASSLETLV  L
Sbjct: 181 KKRAGAAVYNRASSLETLVGYL 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442262|ref|XP_002279256.1| PREDICTED: uncharacterized protein LOC100242891 [Vitis vinifera] gi|297743076|emb|CBI35943.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (637), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 132/210 (62%), Positives = 153/210 (72%), Gaps = 20/210 (9%)

Query: 14  LSLSSSRVRASFDTQQRLSYNPNAPRKIK-----KPPLNLNTNSNSNKSDVAIAKPPTST 68
           + ++S  VRAS+DT  RL YNP+  RK K     KPPLN         S V +   PT T
Sbjct: 4   VGMASLSVRASWDTLPRLPYNPHNRRKPKTPISLKPPLN--------PSPVTLVASPTGT 55

Query: 69  VTPTSTDQSVFDLLKHPTQGVV-ANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGD 127
           V P      V +LL+   Q       D+SYMGY+ WLP+PPKV KPRS +NAASLAY+GD
Sbjct: 56  VVP------VAELLRRDIQNSSQVKSDKSYMGYDIWLPSPPKVKKPRSAYNAASLAYLGD 109

Query: 128 CIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKN 187
           CI+ELYARRHFLFPPL++EEYN+RVMAVVRCE QDALLQKLL+D YLS EERDV+RWGKN
Sbjct: 110 CIFELYARRHFLFPPLNMEEYNDRVMAVVRCEAQDALLQKLLDDYYLSEEERDVLRWGKN 169

Query: 188 VGSANTRTKRRAGAAVYNRASSLETLVSIL 217
           +GSA TRTK+RAG AVYNRASSLETLV  L
Sbjct: 170 IGSAKTRTKKRAGVAVYNRASSLETLVGYL 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344607|ref|XP_003636379.1| hypothetical protein MTR_040s0004 [Medicago truncatula] gi|355502314|gb|AES83517.1| hypothetical protein MTR_040s0004 [Medicago truncatula]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/223 (59%), Positives = 160/223 (71%), Gaps = 21/223 (9%)

Query: 6   CTSSLYLPLSLSSSR----VRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAI 61
            +SSL   ++ SSS+    V+AS+DTQQRL YN NAPRK+          +       + 
Sbjct: 4   LSSSLSWSITFSSSKFKPVVKASWDTQQRLPYNRNAPRKL----------TTQPPKPQSP 53

Query: 62  AKPPTSTVTPTSTDQSVFDLLKH----PTQGVVANL---DESYMGYERWLPNPPKVGKPR 114
           +   +S    T  +  + DLLK     PT G +  +   DE+Y+GY+RWLP PPKV KPR
Sbjct: 54  SPTSSSPAPSTRNENYISDLLKRATPLPTIGKIEEVQEHDETYLGYDRWLPTPPKVVKPR 113

Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
           SVFNAA+LAYIGDCIYELYARRHFLFPPLSIEE+N+RVMAVVRCE QDALLQKLL  ++L
Sbjct: 114 SVFNAATLAYIGDCIYELYARRHFLFPPLSIEEFNDRVMAVVRCEAQDALLQKLLISNFL 173

Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
           S +ERDV+RWGKN+ S+ T+TKRRAGAAVYNRASSLETLV  L
Sbjct: 174 SDQERDVLRWGKNIISSKTKTKRRAGAAVYNRASSLETLVGYL 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124360401|gb|ABN08414.1| Ribonuclease III [Medicago truncatula]

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/220 (60%), Positives = 160/220 (72%), Gaps = 21/220 (9%)

Query: 7   TSSLYLPLSLSSSR----VRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIA 62
           +SSL   ++ SSS+    V+AS+DTQQRL YN NAPRK+          +       + +
Sbjct: 5   SSSLSWSITFSSSKFKPVVKASWDTQQRLPYNRNAPRKL----------TTQPPKPQSPS 54

Query: 63  KPPTSTVTPTSTDQSVFDLLKH----PTQGVVANL---DESYMGYERWLPNPPKVGKPRS 115
              +S    T  +  + DLLK     PT G +  +   DE+Y+GY+RWLP PPKV KPRS
Sbjct: 55  PTSSSPAPSTRNENYISDLLKRATPLPTIGKIEEVQEHDETYLGYDRWLPTPPKVVKPRS 114

Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
           VFNAA+LAYIGDCIYELYARRHFLFPPLSIEE+N+RVMAVVRCE QDALLQKLL  ++LS
Sbjct: 115 VFNAATLAYIGDCIYELYARRHFLFPPLSIEEFNDRVMAVVRCEAQDALLQKLLISNFLS 174

Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVS 215
            +ERDV+RWGKN+ S+ T+TKRRAGAAVYNRASSLETLVS
Sbjct: 175 DQERDVLRWGKNIISSKTKTKRRAGAAVYNRASSLETLVS 214

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454675|ref|XP_003597618.1| hypothetical protein MTR_2g100220 [Medicago truncatula] gi|355486666|gb|AES67869.1| hypothetical protein MTR_2g100220 [Medicago truncatula]

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 132/222 (59%), Positives = 160/222 (72%), Gaps = 21/222 (9%)

Query: 7   TSSLYLPLSLSSSR----VRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIA 62
           +SSL   ++ SSS+    V+AS+DTQQRL YN NAPRK+          +       + +
Sbjct: 5   SSSLSWSITFSSSKFKPVVKASWDTQQRLPYNRNAPRKL----------TTQPPKPQSPS 54

Query: 63  KPPTSTVTPTSTDQSVFDLLKH----PTQGVVANL---DESYMGYERWLPNPPKVGKPRS 115
              +S    T  +  + DLLK     PT G +  +   DE+Y+GY+RWLP PPKV KPRS
Sbjct: 55  PTSSSPAPSTRNENYISDLLKRATPLPTIGKIEEVQEHDETYLGYDRWLPTPPKVVKPRS 114

Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
           VFNAA+LAYIGDCIYELYARRHFLFPPLSIEE+N+RVMAVVRCE QDALLQKLL  ++LS
Sbjct: 115 VFNAATLAYIGDCIYELYARRHFLFPPLSIEEFNDRVMAVVRCEAQDALLQKLLISNFLS 174

Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
            +ERDV+RWGKN+ S+ T+TKRRAGAAVYNRASSLETLV  L
Sbjct: 175 DQERDVLRWGKNIISSKTKTKRRAGAAVYNRASSLETLVGYL 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79366424|ref|NP_175910.2| Ribonuclease III-like protein [Arabidopsis thaliana] gi|34146874|gb|AAQ62445.1| At1g55140 [Arabidopsis thaliana] gi|51968468|dbj|BAD42926.1| hypothetical protein [Arabidopsis thaliana] gi|332195069|gb|AEE33190.1| Ribonuclease III-like protein [Arabidopsis thaliana]

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 126/205 (61%), Positives = 153/205 (74%), Gaps = 10/205 (4%)

Query: 14  LSLSSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTS 73
           LS SS+ VRA+ DTQ +L YNPNAPR +KK         NSN S       P+S+   T+
Sbjct: 4   LSASSTIVRAALDTQPKLRYNPNAPRNVKK---------NSNLSSFVPPSSPSSSSPATN 54

Query: 74  TDQSVFDLLKHP-TQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYEL 132
              SV DLLK P ++ +    D++ +GYE+W P+PPKV KPRSVFNAASLAYIGD IYE+
Sbjct: 55  LSVSVSDLLKRPASKDIGDGFDDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSIYEI 114

Query: 133 YARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSAN 192
           YARRHFLFPPLSIEEYN+RV AVVRCE Q ALLQKL++D +L+ +ERD++RWGKNVGS  
Sbjct: 115 YARRHFLFPPLSIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTKDERDILRWGKNVGSVK 174

Query: 193 TRTKRRAGAAVYNRASSLETLVSIL 217
           TR+ RRAG AVYN+ASSLETL+  L
Sbjct: 175 TRSTRRAGVAVYNKASSLETLIGYL 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2091586	247	AT3G13740 [Arabidopsis thalian	0.507	0.570	0.697	4.8e-58
TAIR|locus:2205687	237	AT1G55140 [Arabidopsis thalian	0.676	0.793	0.575	4.3e-54
UNIPROTKB|O31418	143	mrnC "Mini-ribonuclease 3" [Ba	0.374	0.727	0.289	8.7e-08
UNIPROTKB|Q3A9P2	129	mrnC "Mini-ribonuclease 3" [Ca	0.345	0.744	0.313	3.2e-07
TIGR_CMR|CHY_2337	129	CHY_2337 "conserved hypothetic	0.345	0.744	0.313	3.2e-07
UNIPROTKB|Q97S24	128	mrnC "Mini-ribonuclease 3" [St	0.363	0.789	0.240	1.2e-06
UNIPROTKB|Q81VV0	135	mrnC "Mini-ribonuclease 3" [Ba	0.341	0.703	0.285	2.6e-06
TIGR_CMR|BA_0090	135	BA_0090 "conserved hypothetica	0.341	0.703	0.285	2.6e-06

TAIR|locus:2091586 AT3G13740 [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
 Identities = 99/142 (69%), Positives = 121/142 (85%)

Query:    77 SVFDLLKHPT-QGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR 135
             SV DLLK P+ + +  ++D++YMGYE W P+PPK+ KPRSVFN ASLA+IGD IYELYAR
Sbjct:    54 SVADLLKRPSSKEITVDVDDTYMGYETWSPSPPKLEKPRSVFNPASLAFIGDSIYELYAR 113

Query:   136 RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195
             RHFLFPPLSIE+YN+RV AVVRCE Q ALL KL++D +L+ EERD++RWGKN+GSA TRT
Sbjct:   114 RHFLFPPLSIEDYNDRVRAVVRCEAQYALLNKLVDDDFLTKEERDILRWGKNLGSARTRT 173

Query:   196 KRRAGAAVYNRASSLETLVSIL 217
             +RRAG AVYN+ASSLETL+  L
Sbjct:   174 RRRAGNAVYNKASSLETLIGYL 195

GO:0003723 "RNA binding" evidence=IEA

GO:0004525 "ribonuclease III activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006396 "RNA processing" evidence=IEA

TAIR|locus:2205687 AT1G55140 [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 114/198 (57%), Positives = 137/198 (69%)

Query:    21 VRASFDTQQRLSYNPNAPRKIXXXXXXXXXXXXXXXXDVAIAKXXXXXXXXXXXDQSVFD 80
             VRA+ DTQ +L YNPNAPR +                  + A              SV D
Sbjct:    11 VRAALDTQPKLRYNPNAPRNVKKNSNLSSFVPPSSPSSSSPATNLSV---------SVSD 61

Query:    81 LLKHPTQGVVAN-LDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFL 139
             LLK P    + +  D++ +GYE+W P+PPKV KPRSVFNAASLAYIGD IYE+YARRHFL
Sbjct:    62 LLKRPASKDIGDGFDDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSIYEIYARRHFL 121

Query:   140 FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRA 199
             FPPLSIEEYN+RV AVVRCE Q ALLQKL++D +L+ +ERD++RWGKNVGS  TR+ RRA
Sbjct:   122 FPPLSIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTKDERDILRWGKNVGSVKTRSTRRA 181

Query:   200 GAAVYNRASSLETLVSIL 217
             G AVYN+ASSLETL+  L
Sbjct:   182 GVAVYNKASSLETLIGYL 199

GO:0003723 "RNA binding" evidence=IEA

GO:0004525 "ribonuclease III activity" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|O31418 mrnC "Mini-ribonuclease 3" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 125 (49.1 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 31/107 (28%), Positives = 52/107 (48%)

Query:   112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
             K     N  +LAYIGD I+E+Y R H L    +   + + +   +V  ++Q  +L  L N
Sbjct:     8 KDSKQLNGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQN 67

Query:   171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
              S+ + EE  V++ G+N  S  T   +      Y  +++ E L+  L
Sbjct:    68 QSFFTEEEEAVLKRGRNAKSGTT--PKNTDVQTYRYSTAFEALLGYL 112

GO:0004540 "ribonuclease activity" evidence=IDA

GO:0006364 "rRNA processing" evidence=IDA

UNIPROTKB|Q3A9P2 mrnC "Mini-ribonuclease 3" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 120 (47.3 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 32/102 (31%), Positives = 55/102 (53%)

Query:   117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
             ++  +LAY+GD +YEL  R + L      + E + + +++V    Q AL  +L+ + YL+
Sbjct:     6 YSPLALAYLGDAVYELLTREYVLERYGGKMGEVHKKSVSLVNAR-QQALAGELIEE-YLT 63

Query:   176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
             +EER++ R G+N   A     R     VY R++ LE +   L
Sbjct:    64 SEEREIFRRGRN---AKGNYPRNVEVVVYRRSTGLEAVFGFL 102

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_2337 CHY_2337 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 120 (47.3 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 32/102 (31%), Positives = 55/102 (53%)

Query:   117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
             ++  +LAY+GD +YEL  R + L      + E + + +++V    Q AL  +L+ + YL+
Sbjct:     6 YSPLALAYLGDAVYELLTREYVLERYGGKMGEVHKKSVSLVNAR-QQALAGELIEE-YLT 63

Query:   176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
             +EER++ R G+N   A     R     VY R++ LE +   L
Sbjct:    64 SEEREIFRRGRN---AKGNYPRNVEVVVYRRSTGLEAVFGFL 102

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q97S24 mrnC "Mini-ribonuclease 3" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 115 (45.5 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 25/104 (24%), Positives = 52/104 (50%)

Query:   115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
             ++ N  +LA+ GD +Y +Y RRH +   ++   + +      V  + Q  L+  +L +  
Sbjct:     5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQV 64

Query:   174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
             L+ +E ++ + G+N  S +T+ K  A    Y  ++  E ++  L
Sbjct:    65 LTEKEEEIYKRGRNTNS-HTKAKN-ADVVTYRMSTGFEAVMGYL 106

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q81VV0 mrnC "Mini-ribonuclease 3" [Bacillus anthracis (taxid:1392)]

 Score = 112 (44.5 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 28/98 (28%), Positives = 48/98 (48%)

Query:   118 NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLSA 176
             N+ +LAY+GD +YE Y R H L          +R+  + V  + Q  ++  LL  ++L+ 
Sbjct:     8 NSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTE 67

Query:   177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLV 214
             EE  V+R G+N  S      +      Y  +++ E L+
Sbjct:    68 EEEAVLRRGRNANSGTV--PKNTDVQTYRHSTAFEALI 103

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0090 BA_0090 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 112 (44.5 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 28/98 (28%), Positives = 48/98 (48%)

Query:   118 NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLSA 176
             N+ +LAY+GD +YE Y R H L          +R+  + V  + Q  ++  LL  ++L+ 
Sbjct:     8 NSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTE 67

Query:   177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLV 214
             EE  V+R G+N  S      +      Y  +++ E L+
Sbjct:    68 EEEAVLRRGRNANSGTV--PKNTDVQTYRHSTAFEALI 103


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      278       239   0.00092  113 3  11 22  0.38    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  181 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.65u 0.11s 17.76t   Elapsed:  00:00:01
  Total cpu time:  17.65u 0.11s 17.76t   Elapsed:  00:00:01
  Start:  Fri May 10 16:25:45 2013   End:  Fri May 10 16:25:46 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.97.72.1 SubName- Full=Putative uncharacterized protein; (232 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
COG1939	132	COG1939, COG1939, Ribonuclease III family protein	6e-18
pfam00636	91	pfam00636, Ribonuclease_3, Ribonuclease III domain	6e-13
cd00593	133	cd00593, RIBOc, RIBOc	1e-06
smart00535	129	smart00535, RIBOc, Ribonuclease III family	0.002

>gnl|CDD|224850 COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and repair]

 Score = 77.7 bits (192), Expect = 6e-18
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 7/102 (6%)

Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
           N  +LAY+GD +YELY R + L    +   + + R  A V  + Q  +L+ LL   +L+ 
Sbjct: 14  NGLALAYLGDAVYELYVREYLLLKGKTKPNDLHKRATAYVSAKAQALILKALLE--FLTE 71

Query: 177 EERDVVRWGKNVGSANTRTKRR-AGAAVYNRASSLETLVSIL 217
           EE ++V+ G+N   A + TK +      Y  ++  E L+  L
Sbjct: 72  EEEEIVKRGRN---AKSGTKPKNTDVETYRMSTGFEALIGYL 110

Length = 132

>gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain

 Score = 63.0 bits (154), Expect = 6e-13
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 16/96 (16%)

Query: 121 SLAYIGDCIYELYARRHFL--FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEE 178
            L ++GD + ELY   +    FP LS  E +    A+V  E    L +KL  D YL   E
Sbjct: 2   RLEFLGDAVLELYVSEYLYEKFPDLSEGELHRLRSALVSNEALAKLARKLGLDKYLREGE 61

Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLV 214
            D+V              +RA       A + E L+
Sbjct: 62  GDIV--------------KRASVKDKVLADAFEALI 83

Length = 91

>gnl|CDD|238333 cd00593, RIBOc, RIBOc

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 16/109 (14%)

Query: 108 PKVGKPRSVFNAASLAYIGDCIYELYARRHFL--FPPLSIEEYNNRVMAVVRCETQDALL 165
           P        FN   L ++GD + EL    +    FP LS  +      A+V  ET   L 
Sbjct: 10  PSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLA 69

Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLV 214
           ++L    YL        R GK         K          A   E L+
Sbjct: 70  RELGLGKYL--------RLGKG------EEKSGGRLRPKILADVFEALI 104

Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133

>gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 122 LAYIGDCIYELYARRHFL--FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
           L ++GD + EL    +    +P LS  + +    A+V  ET   L +KL    ++
Sbjct: 22  LEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFI 76

Length = 129

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
COG1939	132	Ribonuclease III family protein [Replication, reco	100.0
PF00636	114	Ribonuclease_3: Ribonuclease III domain; InterPro:	99.39
cd00593	133	RIBOc RIBOc. Ribonuclease III C terminal domain. T	99.33
smart00535	129	RIBOc Ribonuclease III family.	99.29
PRK00102	229	rnc ribonuclease III; Reviewed	98.77
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	98.62
PRK12371	235	ribonuclease III; Reviewed	98.0
PF14622	128	Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_	97.85
PRK14718	467	ribonuclease III; Provisional	97.81
PRK12372	413	ribonuclease III; Reviewed	97.65
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	97.32
KOG1817	533	consensus Ribonuclease [RNA processing and modific	94.56

>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]

Probab=100.00  E-value=9.4e-47  Score=316.11  Aligned_cols=120  Identities=28%  Similarity=0.471  Sum_probs=114.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhCCCC-ChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCC
Q 023707          113 PRSVFNAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSA  191 (278)
Q Consensus       113 ~~~~lspLaLAYLGDAVyELyVR~~LL~~g~-~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~  191 (278)
                      +.+++||++|||+||||||+|||.|++.+|. ++++||+.|++||||++||.+|+.|++  +|||+|.+|+|||||++++
T Consensus         9 ~~~qln~laLAy~GDAV~e~yVR~~~l~~g~~k~~~lH~~a~~~VsAk~QA~il~~~~~--~Lte~E~~I~KRgRNaks~   86 (132)
T COG1939           9 DAKQLNGLALAYLGDAVYELYVREYLLLKGKTKPNDLHKRATAYVSAKAQALILKALLE--FLTEEEEEIVKRGRNAKSG   86 (132)
T ss_pred             CHHhcCHHHHHHhhhHHHHHHHHHHHHhcccCChHHHHHHHHHHhhHHHHHHHHHHHHH--HhhHHHHHHHHHhcccccC
Confidence            5678999999999999999999999999997 699999999999999999999999995  8999999999999999997


Q ss_pred             CCCCCCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHHHHhc
Q 023707          192 NTRTKRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCIMIYS  236 (278)
Q Consensus       192 ks~~pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i~~ie  236 (278)
                      +  .|||+|+.+||+|||||||||||||+++.  |+||+++|++..+
T Consensus        87 T--~~kn~dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~i~~~e  131 (132)
T COG1939          87 T--KPKNTDVETYRMSTGFEALIGYLYLTKQEERLEELLNKVIEIVE  131 (132)
T ss_pred             C--CCCCCChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHHHhhhc
Confidence            3  58999999999999999999999999999  9999999998875

>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3

Probab=99.39  E-value=3.5e-12  Score=99.21  Aligned_cols=99  Identities=20%  Similarity=0.225  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcC-----------
Q 023707          121 SLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKN-----------  187 (278)
Q Consensus       121 aLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRN-----------  187 (278)
                      .|+||||||++++|+.++..  +..++..||..-..+|+.+.++.+..++-=..++..++.++.+|++|           
T Consensus         2 rLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~   81 (114)
T PF00636_consen    2 RLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDSE   81 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC-------
T ss_pred             cHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhcccc
Confidence            48999999999999999995  45689999999999999999999998854347999999999999988           


Q ss_pred             CCCCCCCCCCCCChHHHhhhhhHHHHHHhHhcCc
Q 023707          188 VGSANTRTKRRAGAAVYNRASSLETLVSILVPCF  221 (278)
Q Consensus       188 aks~ks~~pKnasv~~YR~ATGFEALIGYLYL~g  221 (278)
                      ....  ..+++.....+..|+.||||||.+|+.+
T Consensus        82 ~~~~--~~~~~~~~~~k~laD~~EAliGAiyld~  113 (114)
T PF00636_consen   82 SSIS--YDPKNQVLPPKVLADVFEALIGAIYLDS  113 (114)
T ss_dssp             C-SS--S--SSSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccC--CCccccCCccHHHHHHHHHHHHHHHHhc
Confidence            1111  1134677899999999999999999853

1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....

>cd00593 RIBOc RIBOc

Probab=99.33  E-value=1.1e-11  Score=97.57  Aligned_cols=101  Identities=24%  Similarity=0.232  Sum_probs=82.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhhCCC--CChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCC
Q 023707          116 VFNAASLAYIGDCIYELYARRHFLFPP--LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANT  193 (278)
Q Consensus       116 ~lspLaLAYLGDAVyELyVR~~LL~~g--~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks  193 (278)
                      ..+-..|+|+||+|++++++.+++...  .+++.+|.....+|+.+.++.+..++-    |-    +.++++++..    
T Consensus        18 ~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~g----l~----~~i~~~~~~~----   85 (133)
T cd00593          18 RFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELG----LG----KYLRLGKGEE----   85 (133)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcC----cH----HHhccCchHh----
Confidence            367889999999999999999999763  479999999999999999999988883    21    5777777653    


Q ss_pred             CCCCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHH
Q 023707          194 RTKRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAK  230 (278)
Q Consensus       194 ~~pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~  230 (278)
                        .++.....+..|++||||||++||.+..  ..++|..
T Consensus        86 --~~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~  122 (133)
T cd00593          86 --KSGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLR  122 (133)
T ss_pred             --hcCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence              2355678899999999999999999875  5555554

Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.

>smart00535 RIBOc Ribonuclease III family

Probab=99.29  E-value=2.2e-11  Score=96.10  Aligned_cols=101  Identities=21%  Similarity=0.219  Sum_probs=80.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707          118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT  195 (278)
Q Consensus       118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~  195 (278)
                      +-..|+|+||+|++++++.+++..  ..+...+|.....+|+.+.++.+..++-    |.    +.++++++...     
T Consensus        18 ~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~----l~----~~i~~~~~~~~-----   84 (129)
T smart00535       18 HNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLG----LG----EFIRLGRGEAI-----   84 (129)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCC----cH----HHHccCchHhh-----
Confidence            567899999999999999999965  2468899999999999999999988883    22    57778876532     


Q ss_pred             CCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707          196 KRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI  232 (278)
Q Consensus       196 pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i  232 (278)
                       ++.....+..|++|||+||++|+.+..  ..+.+...+
T Consensus        85 -~~~~~~~k~~a~~~eAliGAi~ld~g~~~~~~~i~~~~  122 (129)
T smart00535       85 -SGGRDKPSILADVFEALIGAIYLDSGLEAAREFIRDLL  122 (129)
T ss_pred             -cCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence             233467899999999999999999764  444444433

>PRK00102 rnc ribonuclease III; Reviewed

Probab=98.77  E-value=4.6e-08  Score=84.88  Aligned_cols=100  Identities=20%  Similarity=0.261  Sum_probs=73.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCC
Q 023707          119 AASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK  196 (278)
Q Consensus       119 pLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~p  196 (278)
                      =-.|+|+||+|++++|..+++..  ..+...++.....+|+.+.++.+..++-    |.    +.+++|++....  ..+
T Consensus        41 nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn~~la~~a~~lg----l~----~~i~~~~~~~~~--~~~  110 (229)
T PRK00102         41 NERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVREESLAEIARELG----LG----EYLLLGKGEEKS--GGR  110 (229)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHCC----cH----HHHccCcHHHHc--CCC
Confidence            37899999999999999999843  3578899999999999999999988873    32    466777653211  011


Q ss_pred             CCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707          197 RRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI  232 (278)
Q Consensus       197 Knasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i  232 (278)
                      ++..    -.|+.|||+||.+|+.+..  ..+++...+
T Consensus       111 ~~~k----~~ad~~EA~iGAiyld~g~~~~~~~i~~~~  144 (229)
T PRK00102        111 RRPS----ILADAFEALIGAIYLDQGLEAARKFILRLF  144 (229)
T ss_pred             CCcc----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            1111    2799999999999998765  555554443

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=98.62  E-value=2.3e-07  Score=79.80  Aligned_cols=101  Identities=21%  Similarity=0.226  Sum_probs=73.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707          118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT  195 (278)
Q Consensus       118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~  195 (278)
                      +=..|+||||+|.++++..++...  ..+...++.....+|+.+.++.+...+   + |    .+.++++++....  +.
T Consensus        34 ~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~---g-l----~~~i~~~~~~~~~--~~  103 (220)
T TIGR02191        34 NNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLAEVAREL---G-L----GKFLLLGKGEEKS--GG  103 (220)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHHHHHHHC---C-c----HHHhccCchHhhc--CC
Confidence            457899999999999999999963  357899999999999999999998887   2 2    2455666533210  00


Q ss_pred             CCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707          196 KRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI  232 (278)
Q Consensus       196 pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i  232 (278)
                      . +   ..--.|+.|||+||.+|+.+..  ..+++...+
T Consensus       104 ~-~---~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~  138 (220)
T TIGR02191       104 R-R---RESILADAFEALIGAIYLDSGLEAARKFILKLL  138 (220)
T ss_pred             c-c---cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            0 1   1124799999999999998765  555444443

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>PRK12371 ribonuclease III; Reviewed

Probab=98.00  E-value=6.7e-05  Score=67.78  Aligned_cols=92  Identities=25%  Similarity=0.302  Sum_probs=67.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707          118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT  195 (278)
Q Consensus       118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~  195 (278)
                      |=--|+|+||||.++.|=.++...  ..+...|++.-...|+.+.-+.+...+-    |    .+.++.|.+....  ..
T Consensus        45 ~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~~La~ia~~lg----L----~~~i~~~~~~~~~--~~  114 (235)
T PRK12371         45 NYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAETCAAIADEIG----L----HDLIRTGSDVKKL--TG  114 (235)
T ss_pred             chHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChHHHHHHHHHCC----c----HHHhccCcchhhc--CC
Confidence            446799999999999999999864  3578889988889999999888877762    3    2344556543221  01


Q ss_pred             CCCCChHHHhhhhhHHHHHHhHhcCcch
Q 023707          196 KRRAGAAVYNRASSLETLVSILVPCFSF  223 (278)
Q Consensus       196 pKnasv~~YR~ATGFEALIGYLYL~g~~  223 (278)
                      +++.    --.|+.||||||-+||.+..
T Consensus       115 ~~~~----~ilad~~EAliGAiylD~G~  138 (235)
T PRK12371        115 KRLL----NVRADVVEALIAAIYLDGGL  138 (235)
T ss_pred             cccc----hHHHHHHHHHHHHHHHcCCH
Confidence            1222    23499999999999998755

>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B

Probab=97.85  E-value=1.7e-05  Score=64.49  Aligned_cols=90  Identities=20%  Similarity=0.301  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCC-CChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCC
Q 023707          120 ASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRR  198 (278)
Q Consensus       120 LaLAYLGDAVyELyVR~~LL~~g-~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pKn  198 (278)
                      --|+||||+|.+++|-++++..+ .....+.+.-.+.|+-+.-+.+.+.+-    |.    +.++||.+...      ..
T Consensus        23 erLefLGd~vL~~~vs~~l~~~~~~~~g~l~~~~~~lv~~~~La~~a~~lg----L~----~~i~~~~~~~~------~~   88 (128)
T PF14622_consen   23 ERLEFLGDAVLGLVVSEYLFQRPPADEGELTRLRSNLVSNETLAEIAKQLG----LD----KLIRWGPGEEK------SG   88 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHSHHHHHHHHHHTT----CG----GC-B--HHHHH------TT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCccchHHHHHHHHHhChHHHHHHHHHCC----HH----HHHHhCccHhh------cC
Confidence            46999999999999999998654 345667666678999888888887773    32    24444331110      01


Q ss_pred             CChHHHhhhhhHHHHHHhHhcCcch
Q 023707          199 AGAAVYNRASSLETLVSILVPCFSF  223 (278)
Q Consensus       199 asv~~YR~ATGFEALIGYLYL~g~~  223 (278)
                      ....+--.|+.|||+||-+||....
T Consensus        89 ~~~~~~vlad~feAliGAiyld~G~  113 (128)
T PF14622_consen   89 GSGSDKVLADVFEALIGAIYLDSGF  113 (128)
T ss_dssp             GGG-HHHHHHHHHHHHHHHHHHH-H
T ss_pred             CCCCccHHHhHHHHHHHHHHHHcCH
Confidence            1222335899999999999997654

>PRK14718 ribonuclease III; Provisional

Probab=97.81  E-value=9.1e-05  Score=73.88  Aligned_cols=100  Identities=16%  Similarity=0.163  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCC
Q 023707          119 AASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK  196 (278)
Q Consensus       119 pLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~p  196 (278)
                      =--|.||||+|.+++|=.+|+..  ..+...|.+.-..+|+-+.-+.+-+.|-    |.    +.++.|++....  ...
T Consensus        34 NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetLA~IAr~LG----L~----d~Lrlg~gE~~s--gG~  103 (467)
T PRK14718         34 NERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALN----IS----DGLRLGEGELRS--GGF  103 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHHHHHHHHcC----ch----HHHhhCCccccc--CCC
Confidence            36799999999999999999943  4578999999999999999888877772    33    245556543211  001


Q ss_pred             CCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707          197 RRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI  232 (278)
Q Consensus       197 Knasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i  232 (278)
                      +    ..--.|..||||||-+||.+.+  ..++|...+
T Consensus       104 ~----~~sILADvFEALIGAIYLDsG~e~a~~fI~~ll  137 (467)
T PRK14718        104 R----RPSILADAFEAIIGAVFLDGGFEAAQGVIKRLY  137 (467)
T ss_pred             C----ChhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            1    1223799999999999998766  555544444

>PRK12372 ribonuclease III; Reviewed

Probab=97.65  E-value=0.00021  Score=70.41  Aligned_cols=100  Identities=15%  Similarity=0.157  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCC
Q 023707          119 AASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK  196 (278)
Q Consensus       119 pLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~p  196 (278)
                      =--|.|+||+|.+++|=.+|+..  ..+...|++.-..+|+.+.-+.+-+.|-    |.    +.++-|+.....  ...
T Consensus        34 NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tLA~IA~~Lg----L~----~~Lrlg~ge~~s--gg~  103 (413)
T PRK12372         34 NERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALN----IS----EGLRLGEGELRS--GGF  103 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHHHHHHHHcC----ch----HhhhcCcchhhc--CCC
Confidence            36799999999999999999943  3578899999999999999998877772    32    234445432110  001


Q ss_pred             CCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707          197 RRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI  232 (278)
Q Consensus       197 Knasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i  232 (278)
                      .    ..--.|..||||||-+||.+..  ..+++...+
T Consensus       104 ~----~~kILADvfEALIGAIYLDsG~e~a~~fV~~ll  137 (413)
T PRK12372        104 R----RPSILADAFEAIIGAVFLDGGFEAAQGVIKRLY  137 (413)
T ss_pred             C----CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            1    1123799999999999999766  444444443

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=97.32  E-value=0.00067  Score=62.14  Aligned_cols=103  Identities=23%  Similarity=0.281  Sum_probs=71.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707          118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT  195 (278)
Q Consensus       118 spLaLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~  195 (278)
                      |=--|=|+||||-++.|=++|..  +..+..+|++.-..+|+.++=+.+-+.|-    |.    +.++.|+-...  ++.
T Consensus        43 ~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~~~La~ia~~l~----l~----~~l~lg~ge~~--~gg  112 (235)
T COG0571          43 NNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSEESLAEIARELG----LG----DYLRLGKGEEK--SGG  112 (235)
T ss_pred             chHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC----cc----chhhccCChhh--cCC
Confidence            44568999999999999999994  44679999999999999998888777763    22    12333432211  111


Q ss_pred             CCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHHHH
Q 023707          196 KRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCIMI  234 (278)
Q Consensus       196 pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i~~  234 (278)
                      .++    +=-.|.+|||+||-+||.+..  ..+++...+.-
T Consensus       113 ~~~----~silaD~~EAligAiylD~g~~~~~~~i~~l~~~  149 (235)
T COG0571         113 RRR----ESILADAFEALIGAIYLDSGLEAARKFILKLFLP  149 (235)
T ss_pred             CCc----hhHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            122    223688999999999999875  55554444443

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=94.56  E-value=0.28  Score=49.92  Aligned_cols=98  Identities=16%  Similarity=0.113  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCC
Q 023707          120 ASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKR  197 (278)
Q Consensus       120 LaLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pK  197 (278)
                      .-|-|+||+|+.|.+-+++..  +...-..|-..-..+|+-+.|+++-+.+    .++|-=..      |-..     ++
T Consensus       312 qRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~l----gf~e~li~------n~~~-----k~  376 (533)
T KOG1817|consen  312 QRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDL----GFHEYLIT------NFDL-----KD  376 (533)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHh----CCchhhhh------Ccch-----hh
Confidence            457899999999999999884  3345566777778899999999987666    24443222      2211     11


Q ss_pred             CCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707          198 RAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI  232 (278)
Q Consensus       198 nasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i  232 (278)
                      -.+...==+|.-|||.||-||+-++.  +.+.+..|+
T Consensus       377 ~~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~  413 (533)
T KOG1817|consen  377 FQNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLF  413 (533)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHh
Confidence            12222333588999999999999776  555454443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	278
2gsl_A	137	X-Ray Crystal Structure Of Protein Fn1578 From Fuso		1e-04
1u61_A	138	Crystal Structure Of Putative Ribonuclease Iii From		2e-04

>pdb|2GSL|A Chain A, X-Ray Crystal Structure Of Protein Fn1578 From Fusobacterium Nucleatum. Northeast Structural Genomics Consortium Target Nr1. Length = 137

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
           ++   LA++GD I+EL  R+++L    +I   N  V A V  + Q  + +K++ND     
Sbjct: 13  YSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKIIND---LD 69
Query: 177 EERDVVRWGKNVGSANTRT-KRRAGAAVYNRASSLETLVS 215
           EE  V+  GK   ++N +T  R      Y  A++LE ++ 
Sbjct: 70  EEFKVI--GKRAKNSNIKTFPRSCTVXEYKEATALEAIIG 107

>pdb|1U61|A Chain A, Crystal Structure Of Putative Ribonuclease Iii From Bacillus Cereus Length = 138

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
            N+ +LAY GD +YE Y R H L    +   + +    + V  + Q  ++  LL  ++L+
Sbjct: 10  LNSLALAYXGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVS 215
            EE  V+R G+N  S      +      Y  +++ E L+ 
Sbjct: 70  EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIG 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	278
2gsl_A	137	Hypothetical protein; alpha-helical protein, struc	6e-31
1u61_A	138	Hypothetical protein; structural genomics, PSI, pr	6e-29

>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} Length = 137

 Score =  111 bits (279), Expect = 6e-31
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 106 NPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALL 165
           N       R  ++   LA++GD I+EL  R+++L    +I   N  V A V  + Q  + 
Sbjct: 3   NVDFSKDIRD-YSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIY 61

Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
           +K++N   L  E + + +  KN         R      Y  A++LE ++  +
Sbjct: 62  KKIIN--DLDEEFKVIGKRAKNSNIK--TFPRSCTVMEYKEATALEAIIGAM 109

>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 Length = 138

 Score =  106 bits (266), Expect = 6e-29
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
            N+ +LAY+GD +YE Y R H L    +   + +    + V  + Q  ++  LL  ++L+
Sbjct: 10  LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 69

Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLVSIL 217
            EE  V+R G+N  S      +      Y  +++ E L+   
Sbjct: 70  EEEEAVLRRGRNANSGTVP--KNTDVQTYRHSTAFEALIGYH 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
2gsl_A	137	Hypothetical protein; alpha-helical protein, struc	100.0
1u61_A	138	Hypothetical protein; structural genomics, PSI, pr	100.0
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.2
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.17
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.15
3o2r_A	170	Ribonuclease III; structural genomics, center for	99.06
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	99.02
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	98.93
3rv1_A	246	K. polysporus DCR1; RNAse III enzyme, RNA binding	97.78
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	97.55
2qvw_A	756	GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral	96.48
2qvw_A	756	GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral	95.81

>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}

Probab=100.00  E-value=4e-38  Score=262.85  Aligned_cols=119  Identities=24%  Similarity=0.263  Sum_probs=108.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCC
Q 023707          113 PRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSAN  192 (278)
Q Consensus       113 ~~~~lspLaLAYLGDAVyELyVR~~LL~~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~k  192 (278)
                      +.+++||+.|||||||||||+||++++.+|.++++||+.++++|||++||.+++.|.  ++|||+|.+++|||||++++ 
T Consensus         9 ~~~~~~~~~LefLGDAVleL~vr~~L~~~~~~~g~L~k~~~~~V~a~aqa~~~~~l~--~~Lte~E~~~~rrGrna~~~-   85 (137)
T 2gsl_A            9 DIRDYSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKII--NDLDEEFKVIGKRAKNSNIK-   85 (137)
T ss_dssp             TTTSCCHHHHHHHHHHHHHHHHHHHHTTSCBCHHHHHHHHHHHHSHHHHHHHHHHHG--GGSCHHHHHHHHHHHC--CC-
T ss_pred             ChhhcCHHHHHHhhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhCHHHHHHHHHHHH--HHhCHHHHHHHHhcccccCC-
Confidence            457899999999999999999999999876699999999999999999999999995  58999999999999999875 


Q ss_pred             CCCCCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHHHHh
Q 023707          193 TRTKRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCIMIY  235 (278)
Q Consensus       193 s~~pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i~~i  235 (278)
                       +.|||+++.+||.|||||||||||||.++.  +.+++.++++++
T Consensus        86 -~~~k~~si~~Y~~At~fEALiGaLYLd~~~erl~~ll~~~~~~~  129 (137)
T 2gsl_A           86 -TFPRSCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIKGE  129 (137)
T ss_dssp             -SCCSSSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             -CCCCCCChHHHHHhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence             358999999999999999999999999875  999999998765

>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1

Probab=100.00  E-value=8.2e-37  Score=254.97  Aligned_cols=124  Identities=23%  Similarity=0.394  Sum_probs=114.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhhCCC-CChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCC
Q 023707          113 PRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSA  191 (278)
Q Consensus       113 ~~~~lspLaLAYLGDAVyELyVR~~LL~~g-~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~  191 (278)
                      +.+++||+.|||||||||||+||+||+.++ .++++||+.++++|+|++||.+++.|++++.|||||.+++|||||++++
T Consensus         6 ~~~~~~~erLefLGDAVlel~vr~~L~~~~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~~   85 (138)
T 1u61_A            6 DAKQLNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSG   85 (138)
T ss_dssp             CTTTSCHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSS
T ss_pred             chhhcCHHHHHHhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcccC
Confidence            457899999999999999999999999765 4899999999999999999999999977789999999999999999874


Q ss_pred             CCCCCCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHHHHhccc
Q 023707          192 NTRTKRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCIMIYSGG  238 (278)
Q Consensus       192 ks~~pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i~~ie~~  238 (278)
                        ..+||+++.+||.|||||||||||||.+..  +.+++.+++..+++.
T Consensus        86 --~~~k~~si~~Yr~A~~fEALiGalYLd~g~er~~~~i~~~~~~~~~~  132 (138)
T 1u61_A           86 --TVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAIAVLEEQ  132 (138)
T ss_dssp             --CCCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC-
T ss_pred             --CCCCCCchhhhhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence              358999999999999999999999999886  999999999988765

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.20  E-value=2.7e-11  Score=106.77  Aligned_cols=100  Identities=15%  Similarity=0.167  Sum_probs=75.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCC--CCHHHHHHHHhhcCCCCCC
Q 023707          117 FNAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSY--LSAEERDVVRWGKNVGSAN  192 (278)
Q Consensus       117 lspLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~--LTEEE~~IvRRGRNaks~k  192 (278)
                      .+...|+||||||++++|+.+|+..  ..+...|++....+|++++++.+.+.+--+++  +.+.|..  ..|       
T Consensus        60 ~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r~~lV~~~~la~~a~~lgL~~~l~~~~~e~~--~~~-------  130 (252)
T 1o0w_A           60 ESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEK--TGG-------  130 (252)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHTSHHHHHHHHHHTTHHHHCBCCHHHHH--TTG-------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHHHHHHHcCcHHhhccCchhhh--cCC-------
Confidence            3679999999999999999999943  45799999999999999999999888732112  2232221  111       


Q ss_pred             CCCCCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707          193 TRTKRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI  232 (278)
Q Consensus       193 s~~pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i  232 (278)
                             ...++..|++||||||++||.+..  ..+++...+
T Consensus       131 -------~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~  165 (252)
T 1o0w_A          131 -------RDRDSILADAFEALLAAIYLDQGYEKIKELFEQEF  165 (252)
T ss_dssp             -------GGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             -------CCCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                   124789999999999999999766  555555544

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.17  E-value=6.4e-11  Score=103.21  Aligned_cols=102  Identities=13%  Similarity=0.134  Sum_probs=75.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHh---hcCCCCCHHHHHHHHhhcCCCCC
Q 023707          117 FNAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKL---LNDSYLSAEERDVVRWGKNVGSA  191 (278)
Q Consensus       117 lspLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~L---le~~~LTEEE~~IvRRGRNaks~  191 (278)
                      .+-..|+||||||++++|+.+++..  ..+...||+....+|+++.++.+.+.+   --+++|        ++|++....
T Consensus        40 ~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a~~l~~~gL~~~l--------~~~~~e~~~  111 (242)
T 2a11_A           40 PTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHV--------LLGRGEANT  111 (242)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHHHHHHHHHHHSSSCSGGGC--------BCCHHHHHT
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHHHHHHHhhhhChHHHh--------hcCchhhhc
Confidence            3568999999999999999999943  457999999999999999999999988   211232        222221000


Q ss_pred             CCCCCCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707          192 NTRTKRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI  232 (278)
Q Consensus       192 ks~~pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i  232 (278)
                            .....++..|++||||||++||.+..  ..+++...+
T Consensus       112 ------~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~  148 (242)
T 2a11_A          112 ------GGADKSSILADGMESLLGAIYLQHGMEKAREVILRLF  148 (242)
T ss_dssp             ------TGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred             ------CCCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                  01123789999999999999999766  556555554

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.15  E-value=1.4e-10  Score=99.86  Aligned_cols=86  Identities=13%  Similarity=0.038  Sum_probs=72.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707          118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT  195 (278)
Q Consensus       118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~  195 (278)
                      +-..|+|+||||++++|+.+++..  ..+...||+....+|++++++.+.+.+--+        +.+++|++..      
T Consensus        35 ~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a~~l~l~--------~~l~~~~~~~------  100 (221)
T 2nug_A           35 HYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELH--------KFIRIKRGKI------  100 (221)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHHHHTTTGG--------GTCBSCTTCC------
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHHHHcChH--------HhhccCCCcc------
Confidence            568999999999999999999954  457999999999999999999999888422        3557887662      


Q ss_pred             CCCCChHHHhhhhhHHHHHHhHhcCcch
Q 023707          196 KRRAGAAVYNRASSLETLVSILVPCFSF  223 (278)
Q Consensus       196 pKnasv~~YR~ATGFEALIGYLYL~g~~  223 (278)
                       +     ++..|++||||||++||.+..
T Consensus       101 -~-----~~~lad~~EAliGAiyld~g~  122 (221)
T 2nug_A          101 -N-----ETIIGDVFEALWAAVYIDSGR  122 (221)
T ss_dssp             -C-----HHHHHHHHHHHHHHHHHHTTS
T ss_pred             -c-----chHHHHHHHHHHHHHHHhCCC
Confidence             1     889999999999999998643

>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*

Probab=99.06  E-value=4.8e-10  Score=95.04  Aligned_cols=101  Identities=14%  Similarity=0.166  Sum_probs=72.7

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707          118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT  195 (278)
Q Consensus       118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~  195 (278)
                      +=-.|+|+||||++++|+.+++..  ..+...|++....+|+.++++.+.+.+-=++++.....+....||         
T Consensus        59 ~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~~La~ia~~lgL~~~l~~~~~~~~~~~~---------  129 (170)
T 3o2r_A           59 NNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGK---------  129 (170)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCHHHHHTTGG---------
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHHHHHHHHHHcCcHHhhhcCcchhhcCCC---------
Confidence            346899999999999999999954  458999999999999999999999887433344321111111111         


Q ss_pred             CCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHH
Q 023707          196 KRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCI  232 (278)
Q Consensus       196 pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i  232 (278)
                           ......|++||||||.+||.+..  ..+++...+
T Consensus       130 -----~~~~ilad~fEAliGAiylD~G~~~a~~~i~~~~  163 (170)
T 3o2r_A          130 -----EKPSILSDALEAIIGAIHLEAGFEFAKTIALRLI  163 (170)
T ss_dssp             -----GCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             -----CcchHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence                 12446899999999999998765  445444433

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=99.02  E-value=4.2e-10  Score=99.61  Aligned_cols=103  Identities=14%  Similarity=0.148  Sum_probs=79.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707          118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT  195 (278)
Q Consensus       118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~  195 (278)
                      +=--|+||||||.+++|..+++..  ..+...|++....+|+.++++.+.+.+--+++|...+.+...+||+.       
T Consensus        59 ~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~~La~~a~~lgL~~~l~~~~~e~~~~g~~~-------  131 (248)
T 3n3w_A           59 NNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEK-------  131 (248)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHHHHHHHHTTGGGTCBCCHHHHHTTGGGC-------
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHHHHcCcHHHhhcCchhhhcCCCCC-------
Confidence            346899999999999999999853  45788999999999999999999998843456655444444555543       


Q ss_pred             CCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHHHH
Q 023707          196 KRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCIMI  234 (278)
Q Consensus       196 pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i~~  234 (278)
                             .-..|++|||+||.+||.+..  ..+++...+.-
T Consensus       132 -------~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~~  165 (248)
T 3n3w_A          132 -------PSILSDALEAIIGAIHLEAGFEFAKTIALRLIEK  165 (248)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             -------ccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHH
Confidence                   126899999999999998765  55666555544

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=98.93  E-value=3.7e-09  Score=92.88  Aligned_cols=106  Identities=17%  Similarity=0.159  Sum_probs=75.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCC---HH----HHHHHH--hhc
Q 023707          118 NAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS---AE----ERDVVR--WGK  186 (278)
Q Consensus       118 spLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LT---EE----E~~IvR--RGR  186 (278)
                      |=.-|+||||||++++|..+|...  ..+...|++....+|+.+.+|.+...+--+.+|.   ++    +.++++  .||
T Consensus        49 ~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~  128 (265)
T 3c4b_A           49 CYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEK  128 (265)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhHHHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhh
Confidence            457899999999999999999954  4579999999999999999999998874334443   22    344555  566


Q ss_pred             CCCCCCC--------CCCCCCC-hHHHhhhhhHHHHHHhHhcCcch
Q 023707          187 NVGSANT--------RTKRRAG-AAVYNRASSLETLVSILVPCFSF  223 (278)
Q Consensus       187 Naks~ks--------~~pKnas-v~~YR~ATGFEALIGYLYL~g~~  223 (278)
                      |...+..        ...++.+ ......|++||||||.+||.+..
T Consensus       129 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAiylD~G~  174 (265)
T 3c4b_A          129 NEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGM  174 (265)
T ss_dssp             HC------------------CCSCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             hhhcchhHHhhhcchhhhhhcccccchHHHHHHHHHhhheeeecCC
Confidence            6421100        0012222 35688999999999999998653

>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}

Probab=97.78  E-value=8.1e-05  Score=66.90  Aligned_cols=91  Identities=11%  Similarity=0.044  Sum_probs=63.6

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707          118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT  195 (278)
Q Consensus       118 spLaLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~  195 (278)
                      +=--|+|+||||.++.|-.++..  +......|++.-...|+-+.-+.+.+.+-    |.    +.+++|......    
T Consensus       128 ~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs~lVsn~~La~iA~~lg----L~----~~l~~~~g~~~~----  195 (246)
T 3rv1_A          128 SNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLN----FT----KRLQGNIATPTR----  195 (246)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHHTT----SH----HHHCSSCC--------
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHHCC----cH----HHHhhcCCHhhh----
Confidence            45789999999999999999984  34679999999999999999998887762    21    234433211110    


Q ss_pred             CCCCChHHHhhhhhHHHHHHhHhcCc
Q 023707          196 KRRAGAAVYNRASSLETLVSILVPCF  221 (278)
Q Consensus       196 pKnasv~~YR~ATGFEALIGYLYL~g  221 (278)
                       +......=-.|..|||+||-+||.+
T Consensus       196 -~~~~~~~~ilAD~fEAlIGAIylD~  220 (246)
T 3rv1_A          196 -VVKDKMSKRYADCVQAYIGALVIDR  220 (246)
T ss_dssp             --------CHHHHHHHHHHHHHHHHH
T ss_pred             -ccCcccccHHHHHHHHHHHHHhHcC
Confidence             0001112236899999999999997

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=97.55  E-value=0.00033  Score=65.28  Aligned_cols=91  Identities=13%  Similarity=0.046  Sum_probs=65.6

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707          118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT  195 (278)
Q Consensus       118 spLaLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~  195 (278)
                      +=--|+|+||||.+++|-.++..  +......|++.-..+|+.+.-+.+...+-=+++|        ++|.....     
T Consensus       128 ~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~~lVs~~~La~iA~~lgL~~~l--------~~~~g~~~-----  194 (341)
T 3rv0_A          128 SNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRL--------QGNIATPT-----  194 (341)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHHTTTTTTT--------CCSSCCC------
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHHcCcHHHh--------hhcCChhh-----
Confidence            44789999999999999999984  4568999999999999999999988887322232        22211100     


Q ss_pred             CCCCChHHHhhhhhHHHHHHhHhcCc
Q 023707          196 KRRAGAAVYNRASSLETLVSILVPCF  221 (278)
Q Consensus       196 pKnasv~~YR~ATGFEALIGYLYL~g  221 (278)
                      .+..+...=-.|.+|||+||-+||.+
T Consensus       195 ~~~~~~~~~ilaD~fEAlIGAIylD~  220 (341)
T 3rv0_A          195 RVVKDKMSKRYADCVEAYIGALVIDR  220 (341)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCccccHHHHHHHHHHHHHhhcC
Confidence            11112334456899999999999986

>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A

Probab=96.48  E-value=0.0062  Score=62.22  Aligned_cols=88  Identities=10%  Similarity=0.111  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCC
Q 023707          120 ASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKR  197 (278)
Q Consensus       120 LaLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~pK  197 (278)
                      --|.|+||||.++.|-.++..  +......|.+.-..+|+-+.-+.+.+++-.  .|    .+.++.|+....      +
T Consensus       648 eRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~--~L----~~~l~~~~~e~~------~  715 (756)
T 2qvw_A          648 QKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPS--VV----SEVIIESHPKIQ------P  715 (756)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCT--HH----HHHHHHHSTTCC------T
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcc--cH----HHHHhcCchhhc------C
Confidence            669999999999999999984  345799999999999999999887776610  01    134555543311      1


Q ss_pred             CCChHHHhhhhhHHHHHHhHhcCcch
Q 023707          198 RAGAAVYNRASSLETLVSILVPCFSF  223 (278)
Q Consensus       198 nasv~~YR~ATGFEALIGYLYL~g~~  223 (278)
                      +.    =-.|..|||+||-+||.+..
T Consensus       716 ~~----kilaD~~EAliGAiylD~G~  737 (756)
T 2qvw_A          716 DS----KVYGDTFEAILAAILLACGE  737 (756)
T ss_dssp             TC----SHHHHHHHHHHHHHHHHHCH
T ss_pred             Cc----cHHHHHHHHHHHHHHHhCCH
Confidence            11    13799999999999997653

>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A

Probab=95.81  E-value=0.028  Score=57.45  Aligned_cols=84  Identities=20%  Similarity=0.248  Sum_probs=62.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhhC--CCCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 023707          118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT  195 (278)
Q Consensus       118 spLaLAYLGDAVyELyVR~~LL~--~g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~  195 (278)
                      |=--|.|+||||.++.|=.+|..  +......|.+.-.++|+-+.=+++-+++-=++++        +-|+...      
T Consensus       333 nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l--------~~~~~e~------  398 (756)
T 2qvw_A          333 VFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLA--------EFSNNLV------  398 (756)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTC--------BCCSCC-------
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHh--------ccCCCCC------
Confidence            45679999999999999999984  4457899999999999999988888877422222        2232221      


Q ss_pred             CCCCChHHHhhhhhHHHHHHhHhcC
Q 023707          196 KRRAGAAVYNRASSLETLVSILVPC  220 (278)
Q Consensus       196 pKnasv~~YR~ATGFEALIGYLYL~  220 (278)
                       .+    .--.|.+|||+||-+||.
T Consensus       399 -~~----~~ilaD~~EAliGAiylD  418 (756)
T 2qvw_A          399 -AK----SKTWADMYEEIVGSIFTG  418 (756)
T ss_dssp             --C----CCCHHHHHHHHHHHHHHS
T ss_pred             -Cc----ccHHHhHHHHHhCccccc
Confidence             01    113588999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	278
d1u61a_	127	a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill	6e-15

>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127

class: All alpha proteins
fold: RNase III domain-like
superfamily: RNase III domain-like
family: RNase III catalytic domain-like
domain: Hypothetical protein BC0111
species: Bacillus cereus [TaxId: 1396]

 Score = 67.7 bits (165), Expect = 6e-15
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 118 NAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
           N+ +LAY+GD +YE Y R H L    +   + +    + V  + Q  ++  LL  ++L+ 
Sbjct: 7   NSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTE 66

Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLV 214
           EE  V+R G+N  S      +      Y  +++ E L+
Sbjct: 67  EEEAVLRRGRNANSGTVP--KNTDVQTYRHSTAFEALI 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	278
d1u61a_	127	Hypothetical protein BC0111 {Bacillus cereus [TaxI	99.97
d1o0wa1	169	RNase III endonuclease catalytic domain {Thermotog	98.27
d2nuga1	148	RNase III endonuclease catalytic domain {Aquifex a	97.75

>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: RNase III domain-like
superfamily: RNase III domain-like
family: RNase III catalytic domain-like
domain: Hypothetical protein BC0111
species: Bacillus cereus [TaxId: 1396]

Probab=99.97  E-value=3.8e-32  Score=219.68  Aligned_cols=122  Identities=24%  Similarity=0.408  Sum_probs=112.7

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhCC-CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCC
Q 023707          114 RSVFNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSAN  192 (278)
Q Consensus       114 ~~~lspLaLAYLGDAVyELyVR~~LL~~-g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~k  192 (278)
                      ++++||++|+|||||||||+||.|++.. +.++..||+...++|++++|+++.+.+..+++|+++|.++++||||.+++ 
T Consensus         3 ~~~~~~~~LefLGDAVl~l~v~~~L~~~~p~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~~~e~~~~~~Grn~~~~-   81 (127)
T d1u61a_           3 AKQLNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSG-   81 (127)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSS-
T ss_pred             hhhcChHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHccHHHHHHHHHHhCcHHHhhhccccccccCCcccCC-
Confidence            5689999999999999999999999954 35799999999999999999999999988899999999999999999874 


Q ss_pred             CCCCCCCChHHHhhhhhHHHHHHhHhcCcch--HHHHHHHHHHHhcc
Q 023707          193 TRTKRRAGAAVYNRASSLETLVSILVPCFSF--ISCQIAKCIMIYSG  237 (278)
Q Consensus       193 s~~pKnasv~~YR~ATGFEALIGYLYL~g~~--L~ELl~~~i~~ie~  237 (278)
                       +.+||+++.+|+.||+||||||||||.++.  ++++++++++.+|+
T Consensus        82 -~~~k~~~~~~y~lad~fEAliGalYLd~~~e~~~~~i~~~~~~~ee  127 (127)
T d1u61a_          82 -TVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAIAVLEE  127 (127)
T ss_dssp             -CCCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             -CCCcccchhHHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcC
Confidence             468999999999999999999999998775  99999999998864

>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: RNase III domain-like
superfamily: RNase III domain-like
family: RNase III catalytic domain-like
domain: RNase III endonuclease catalytic domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.75  E-value=2.4e-05  Score=61.96  Aligned_cols=84  Identities=13%  Similarity=0.085  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhCC--CCChhHHHHHHHhHhchHHHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCC
Q 023707          119 AASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK  196 (278)
Q Consensus       119 pLaLAYLGDAVyELyVR~~LL~~--g~~v~~LHk~av~yVsAkAQA~ll~~Lle~~~LTEEE~~IvRRGRNaks~ks~~p  196 (278)
                      =-.|+|+||+|.++.|-.++...  ..+...++..-...|+.+.-|.+..++-=.++        ++.+++..     .+
T Consensus        34 ~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~La~~a~~lgl~~~--------i~~~~~~~-----~~  100 (148)
T d2nuga1          34 YETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKF--------IRIKRGKI-----NE  100 (148)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHHHHTTTGGGT--------CBSCTTCC-----CH
T ss_pred             hHHHHHHHHHHHhhhhHHHHHhhCCCcchHHHHHHHHHhhhhhHhhhHHHHhhHHHH--------HHhccccc-----hh
Confidence            46799999999999999998843  45789999999999999988888776631122        23332211     01


Q ss_pred             CCCChHHHhhhhhHHHHHHhHhcCcc
Q 023707          197 RRAGAAVYNRASSLETLVSILVPCFS  222 (278)
Q Consensus       197 Knasv~~YR~ATGFEALIGYLYL~g~  222 (278)
                      |       -.|+.|||+||-+|+.+.
T Consensus       101 k-------ilad~~EAiiGAiylD~g  119 (148)
T d2nuga1         101 T-------IIGDVFEALWAAVYIDSG  119 (148)
T ss_dssp             H-------HHHHHHHHHHHHHHHHTT
T ss_pred             h-------hhHHHHHHHHHHhhhccC
Confidence            1       258999999999999543