Citrus Sinensis ID: 023748

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MYLLANLMQLGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
Secondary Structure (PSIPRED)
cHHcHHHHHcccEEEEEEEEEEEEccHHHHHHHHcccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MYLLANLMQLGGFFIWSYSYQLIKQSSVRYKALAqaaepeevpkevnkdFDANAQTQllrgttddqeDVSVLVAStksssdpecqiivpqashlqtrKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRnliigdsaplrVIQDSIEilgdgtipcITLILggnliqglrsstlkplIIIAVVCVRYIALPFIGVWVVKAAAalgflpsdplyHYVLMVQftlppamnigtMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
Flexible Loop (DISEMBL)
MYLLANLMQLGGFFIWSYSYQLIKQSSVRYKALAQAaepeevpkevnKDFDANAQTQllrgttddqedVSVLVAstksssdpecQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
Low Complexity Region (SEG)
MYLLANLMQLGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSleflhqlleellapptlaaIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
Disordered region (IsUnstruct)
*YLLANLMQLGGFFIWSYSYQLIKQSSVRYKAL***************************************************QIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWIL*
Disordered Region (DISOPRED)
MYLLANLMQLGGFFIWSYSYQLI********************************************************************************RSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
Disordered Region (DISEMBL)
MYLLANLMQLGGFFIWSYSYQLIKQSSVRY**************EVNKDFDANAQTQLLRGTTDDQEDVSVLVA********ECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
Disordered Region (DISPRO)
MYLLANLMQLGGFFIWSYSYQLIKQSSVRYKALA***************************************************************KESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLLANLMQLGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
255561457	406	auxin:hydrogen symporter, putative [Rici	0.913	0.625	0.649	9e-93
224081467	397	predicted protein [Populus trichocarpa]	0.881	0.617	0.623	3e-91
359480743	421	PREDICTED: uncharacterized transporter Y	0.953	0.629	0.612	4e-90
147765756	436	hypothetical protein VITISV_012649 [Viti	0.953	0.607	0.612	5e-90
356496547	419	PREDICTED: uncharacterized transporter Y	0.953	0.632	0.558	9e-84
356538399	419	PREDICTED: uncharacterized transporter Y	0.953	0.632	0.555	1e-83
18398448	396	auxin efflux carrier-like protein [Arabi	0.870	0.611	0.560	2e-83
21536598	396	unknown [Arabidopsis thaliana]	0.870	0.611	0.553	2e-82
148608655	412	auxin hydrogen symporter [Malus x domest	0.935	0.631	0.568	5e-82
357484233	420	Transporter, putative [Medicago truncatu	0.953	0.630	0.538	1e-80

>gi|255561457|ref|XP_002521739.1| auxin:hydrogen symporter, putative [Ricinus communis] gi|223539130|gb|EEF40726.1| auxin:hydrogen symporter, putative [Ricinus communis]

 Score =  345 bits (886), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 176/271 (64%), Positives = 211/271 (77%), Gaps = 17/271 (6%)

Query: 8   MQLGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQE 67
           M +GGF+IW+Y+Y LI+ S+ + +A+ QA E  E  K  NKD +A  +T LL+G  +DQE
Sbjct: 153 MAIGGFYIWTYTYHLIRTSATKLRAI-QAEE--EASKAPNKDLEATPETHLLKG--EDQE 207

Query: 68  DVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVG 127
            V + V S KS  D E Q   P +S         W + +  L Q++EELLAPPT+AAI G
Sbjct: 208 HVVISVPSIKSVDDQESQ---PASS---------WSKWIGILRQIMEELLAPPTIAAIFG 255

Query: 128 FIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLII 187
           F+FGA  +LRNLIIG SAPLRVIQDSI++LGDGTIPCITLILGGNLIQGLRSS +KP II
Sbjct: 256 FLFGATTFLRNLIIGSSAPLRVIQDSIKLLGDGTIPCITLILGGNLIQGLRSSRIKPWII 315

Query: 188 IAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVA 247
           + V+ VR++ LP IG+W+VKAA +LGFLPSDPLYH+VLMVQ+TLPPAMNIGTMTQLFDV 
Sbjct: 316 VGVLFVRFMMLPAIGIWLVKAAGSLGFLPSDPLYHFVLMVQYTLPPAMNIGTMTQLFDVG 375

Query: 248 QEECSVLFLWTYLVAALALTGWSMVYMWILS 278
           QEECSVLFLWTYLVAALALT WS +YMWILS
Sbjct: 376 QEECSVLFLWTYLVAALALTFWSTIYMWILS 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081467|ref|XP_002306421.1| predicted protein [Populus trichocarpa] gi|222855870|gb|EEE93417.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (873), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 169/271 (62%), Positives = 201/271 (74%), Gaps = 26/271 (9%)

Query: 8   MQLGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQE 67
           M LGGFFIW+Y++ LI+ S+ + KAL    E  + P   N DFDA+ +T LL G   DQE
Sbjct: 153 MALGGFFIWTYTFHLIRTSAAKLKALQAVVEASKAP---NNDFDASQETHLLIG--QDQE 207

Query: 68  DVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVG 127
           +V++       SS                     W + + FLHQ+LEELL PPT+AAI+G
Sbjct: 208 NVAIEHGKGNVSS---------------------WTKLIGFLHQILEELLEPPTIAAILG 246

Query: 128 FIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLII 187
           FIFGA  +LRNLIIG  APLRVIQDSI++LGDGTIPCITLILGGNL +GLR+S +K  I+
Sbjct: 247 FIFGATTFLRNLIIGSEAPLRVIQDSIKLLGDGTIPCITLILGGNLTEGLRASKIKSWIV 306

Query: 188 IAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVA 247
           + V+CVRYI LP IG+WVVKAA  LGFLPSDPL+HYVLM+Q+TLPPAMNIGTMTQLFDV 
Sbjct: 307 VGVICVRYIILPAIGMWVVKAAGHLGFLPSDPLFHYVLMIQYTLPPAMNIGTMTQLFDVG 366

Query: 248 QEECSVLFLWTYLVAALALTGWSMVYMWILS 278
           QEECSVLFLWTYLVAALALT WS ++MWILS
Sbjct: 367 QEECSVLFLWTYLVAALALTAWSTIFMWILS 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480743|ref|XP_002276744.2| PREDICTED: uncharacterized transporter YBR287W-like [Vitis vinifera] gi|296082565|emb|CBI21570.3| unnamed protein product [Vitis vinifera]

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 166/271 (61%), Positives = 204/271 (75%), Gaps = 6/271 (2%)

Query: 10  LGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDV 69
           LGG FIW+Y+YQLI+ S  +Y A+    +  +VP   NK+ DAN +T LL+G  D +   
Sbjct: 155 LGGIFIWTYTYQLIRSSVTKYYAIQDVKDVIKVP---NKELDANKETHLLKGE-DQEHGT 210

Query: 70  SVLVASTKSSSDPECQIIVPQ--ASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVG 127
           S    S  +  D E Q+IV Q  A  L+  KESFW R      Q+++ELL+PPTL AI+G
Sbjct: 211 SSFPPSNSTGEDVEKQVIVSQESAGSLEDGKESFWARVAGIASQMMKELLSPPTLGAILG 270

Query: 128 FIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLII 187
           F+FGAV WL+N + GD APLRV+QDS+++L +GTIPCITLILGGNL +GLRSS +KP II
Sbjct: 271 FVFGAVPWLKNFLTGDEAPLRVVQDSVKLLANGTIPCITLILGGNLTRGLRSSGIKPSII 330

Query: 188 IAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVA 247
           IAV+CVRY  LP IG+ VVKAA+ LGF+ SDPLY YVLM+QFTLPPAMNIGTMT+LF+V 
Sbjct: 331 IAVICVRYFILPLIGIAVVKAASNLGFVLSDPLYLYVLMIQFTLPPAMNIGTMTELFNVG 390

Query: 248 QEECSVLFLWTYLVAALALTGWSMVYMWILS 278
           QEECSVLFLWTYL AALALT WS +YMW+LS
Sbjct: 391 QEECSVLFLWTYLFAALALTVWSTIYMWLLS 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765756|emb|CAN62432.1| hypothetical protein VITISV_012649 [Vitis vinifera]

 Score =  336 bits (862), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 166/271 (61%), Positives = 204/271 (75%), Gaps = 6/271 (2%)

Query: 10  LGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDV 69
           LGG FIW+Y+YQLI+ S  +Y A+    +  +VP   NK+ DAN +T LL+G  D +   
Sbjct: 170 LGGIFIWTYTYQLIRSSVTKYYAIQDVKDVIKVP---NKELDANKETHLLKGE-DQEHGT 225

Query: 70  SVLVASTKSSSDPECQIIVPQ--ASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVG 127
           S    S  +  D E Q+IV Q  A  L+  KESFW R      Q+++ELL+PPTL AI+G
Sbjct: 226 SSFPPSNSTGEDVEKQVIVSQESAGSLEDGKESFWARVAGIASQMMKELLSPPTLGAILG 285

Query: 128 FIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLII 187
           F+FGAV WL+N + GD APLRV+QDS+++L +GTIPCITLILGGNL +GLRSS +KP II
Sbjct: 286 FVFGAVPWLKNFLTGDEAPLRVVQDSVKLLANGTIPCITLILGGNLTRGLRSSGIKPSII 345

Query: 188 IAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVA 247
           IAV+CVRY  LP IG+ VVKAA+ LGF+ SDPLY YVLM+QFTLPPAMNIGTMT+LF+V 
Sbjct: 346 IAVICVRYFILPLIGIAVVKAASNLGFVLSDPLYLYVLMIQFTLPPAMNIGTMTELFNVG 405

Query: 248 QEECSVLFLWTYLVAALALTGWSMVYMWILS 278
           QEECSVLFLWTYL AALALT WS +YMW+LS
Sbjct: 406 QEECSVLFLWTYLFAALALTVWSTIYMWLLS 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496547|ref|XP_003517128.1| PREDICTED: uncharacterized transporter YBR287W-like isoform 2 [Glycine max]

 Score =  316 bits (809), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 152/272 (55%), Positives = 204/272 (75%), Gaps = 7/272 (2%)

Query: 8   MQLGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQE 67
           M LGG FIW+Y+YQ +K  S+++KAL +AAE  +VP   NKDFDANA+T LL+   +D E
Sbjct: 154 MALGGIFIWTYTYQTVKSRSLKFKAL-EAAEIVKVP---NKDFDANAETHLLK--DNDSE 207

Query: 68  DVSVLVASTKSSSDPECQIIVPQ-ASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIV 126
           D ++ V ++    D E QIIV Q  S++  + ES W R +E +  LL EL++PP +A   
Sbjct: 208 DTTIEVPTSTYIGDTENQIIVDQDQSNVSKKTESSWHRMVEVMSHLLAELVSPPAIATFF 267

Query: 127 GFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLI 186
           GF+FGAV WLRNLIIGD+APLRVIQDS+++LG+GTIPCITL+LGGNL QGL+SS++KPL 
Sbjct: 268 GFLFGAVAWLRNLIIGDNAPLRVIQDSLQLLGNGTIPCITLLLGGNLTQGLKSSSVKPLT 327

Query: 187 IIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDV 246
           + +++  R   LP IG+++V+AAA LG LP DPL+ YVL++Q+ +PPAMNI T+ QLF+V
Sbjct: 328 LTSIIIARLFLLPVIGLFIVRAAANLGLLPVDPLFQYVLVMQYAMPPAMNISTVAQLFEV 387

Query: 247 AQEECSVLFLWTYLVAALALTGWSMVYMWILS 278
             EECSV+ LWTY  AA+ALT WS   +W+LS
Sbjct: 388 GNEECSVILLWTYTAAAIALTAWSTFLLWLLS 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538399|ref|XP_003537691.1| PREDICTED: uncharacterized transporter YBR287W-like [Glycine max]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 151/272 (55%), Positives = 204/272 (75%), Gaps = 7/272 (2%)

Query: 8   MQLGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQE 67
           M LGG FIW+Y+YQ +K  S+++KAL +AAE  +VP   NKDFDANA+T LL+   +D E
Sbjct: 154 MALGGIFIWTYTYQTVKSRSLKFKAL-EAAEIVKVP---NKDFDANAETHLLK--DNDSE 207

Query: 68  DVSVLVASTKSSSDPECQIIVPQ-ASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIV 126
           D ++ V ++    D E QIIV Q  S++  ++ES W R +E +  LL EL++PP +A   
Sbjct: 208 DTTIQVPTSTYIGDTENQIIVDQDQSNVSKKRESSWHRMVEVMSHLLAELMSPPAIATFF 267

Query: 127 GFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLI 186
           GF+FGAV WLRN+IIGD APLRVIQDS+++LG+GTIPCITL+LGGNL QGL+SS++KPL 
Sbjct: 268 GFLFGAVAWLRNIIIGDDAPLRVIQDSLQLLGNGTIPCITLLLGGNLAQGLKSSSVKPLT 327

Query: 187 IIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDV 246
           +I+++  R + LP IG+++V+AAA    LP DPL+ YVL++Q+ +PPAMNI TM QLF+V
Sbjct: 328 LISIIIARLLLLPIIGLFIVRAAANFDLLPVDPLFQYVLVMQYAMPPAMNISTMAQLFEV 387

Query: 247 AQEECSVLFLWTYLVAALALTGWSMVYMWILS 278
             EECSV+ LWTY  AA+ALT WS   +W+LS
Sbjct: 388 GNEECSVILLWTYSAAAIALTAWSTFLLWLLS 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398448|ref|NP_565417.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|30680004|ref|NP_849964.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|42570811|ref|NP_973479.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|79322403|ref|NP_001031363.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|4914371|gb|AAD32907.1| expressed protein [Arabidopsis thaliana] gi|110740748|dbj|BAE98473.1| hypothetical protein [Arabidopsis thaliana] gi|330251540|gb|AEC06634.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|330251541|gb|AEC06635.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|330251542|gb|AEC06636.1| auxin efflux carrier-like protein [Arabidopsis thaliana] gi|330251543|gb|AEC06637.1| auxin efflux carrier-like protein [Arabidopsis thaliana]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 152/271 (56%), Positives = 203/271 (74%), Gaps = 29/271 (10%)

Query: 8   MQLGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVP-KEVNKDFDANAQTQLLRGTTDDQ 66
           M LGGF+IW+Y+++LIK S+++ +A+    E E++  K  N D +A+ +T LL G  +D+
Sbjct: 153 MALGGFYIWTYTFRLIKGSAMKVQAIE---ESEKIAIKSSNSDLEADHKTHLL-GAPEDK 208

Query: 67  EDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIV 126
           E+  V                          K  FW++ ++FLH++LEELLAPPTL AI+
Sbjct: 209 ENKVV------------------------KEKTGFWRKGVDFLHEILEELLAPPTLGAII 244

Query: 127 GFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLI 186
           GFIFGAV WLRNLIIGD APLR++Q + ++LGDGTIPC+T+ILGGNLIQGLRSS +KP++
Sbjct: 245 GFIFGAVRWLRNLIIGDDAPLRIVQSTAKLLGDGTIPCMTIILGGNLIQGLRSSAVKPMV 304

Query: 187 IIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDV 246
           ++ +VCVRYIA+P IG+ +V  AA LGFLP+DPL+ YVLM+QFTLPPAMNIGTMTQL++V
Sbjct: 305 VLGIVCVRYIAMPIIGIGIVLTAANLGFLPADPLFQYVLMLQFTLPPAMNIGTMTQLYNV 364

Query: 247 AQEECSVLFLWTYLVAALALTGWSMVYMWIL 277
           AQ+ECSVL LWTYLVA LALT WS +++ +L
Sbjct: 365 AQDECSVLMLWTYLVAILALTVWSTIFLHLL 395

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536598|gb|AAM60930.1| unknown [Arabidopsis thaliana]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/271 (55%), Positives = 202/271 (74%), Gaps = 29/271 (10%)

Query: 8   MQLGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVP-KEVNKDFDANAQTQLLRGTTDDQ 66
           M LGGF+IW+Y+++LIK S+++ +A+    E E++  K  N D +A+ +T LL G  +D+
Sbjct: 153 MALGGFYIWTYTFRLIKGSAMKVQAIE---ESEKIAIKSSNSDLEADHKTHLL-GAPEDK 208

Query: 67  EDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIV 126
           E+  V                          +  FW++ ++FLH++LEELLAPPTL AI+
Sbjct: 209 ENKVV------------------------KEETGFWRKGVDFLHEILEELLAPPTLGAII 244

Query: 127 GFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLI 186
           GFIFGAV WLRNLIIGD APLR++Q + ++LGDGTIPC+T+ILGGNLIQGLRSS +KP++
Sbjct: 245 GFIFGAVRWLRNLIIGDDAPLRIVQSTAKLLGDGTIPCMTIILGGNLIQGLRSSAVKPMV 304

Query: 187 IIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDV 246
           ++ +VC RYIA+P IG+ +V  AA LGFLP+DPL+ YVLM+QFTLPPAMNIGTMTQL++V
Sbjct: 305 VLGIVCARYIAMPIIGIGIVLTAANLGFLPADPLFQYVLMLQFTLPPAMNIGTMTQLYNV 364

Query: 247 AQEECSVLFLWTYLVAALALTGWSMVYMWIL 277
           AQ+ECSVL LWTYLVA LALT WS +++ +L
Sbjct: 365 AQDECSVLMLWTYLVAILALTVWSTIFLHLL 395

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148608655|gb|ABQ95657.1| auxin hydrogen symporter [Malus x domestica]

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 154/271 (56%), Positives = 197/271 (72%), Gaps = 11/271 (4%)

Query: 8   MQLGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQE 67
           M LG FFIW+YSYQLI+ SS+R+K L  A E EE  K  N D DA+ +T LL+   +D+E
Sbjct: 153 MALGNFFIWTYSYQLIRTSSIRWKELQAAEETEEASKRRNTDLDADEETHLLK--REDEE 210

Query: 68  DVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVG 127
             +V+V+ T  +      I+ P  S++      F  + LEF  Q+L ELLAPPT+AAIVG
Sbjct: 211 QAAVVVSETSVNQ----AIVTPDESNM-----PFSHKVLEFFRQILHELLAPPTVAAIVG 261

Query: 128 FIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLII 187
           F  G++  ++N+IIGD APL VI+DSI  LG+GTIPCITLILGGNLIQGLR  T+K   +
Sbjct: 262 FFVGSITVIKNIIIGDDAPLHVIEDSITRLGNGTIPCITLILGGNLIQGLRKPTIKVPTL 321

Query: 188 IAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVA 247
           + V+  +YI +P IG+ +V  A  LG LPS+ L+H+VLM+QFTLPPAMNIGTM QL+DVA
Sbjct: 322 LGVIIAKYIVMPAIGIGIVTGADKLGLLPSNSLFHFVLMLQFTLPPAMNIGTMAQLYDVA 381

Query: 248 QEECSVLFLWTYLVAALALTGWSMVYMWILS 278
           + ECSV+FLWTYLVAALALT WS ++MWILS
Sbjct: 382 EAECSVIFLWTYLVAALALTVWSTIFMWILS 412

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484233|ref|XP_003612404.1| Transporter, putative [Medicago truncatula] gi|355513739|gb|AES95362.1| Transporter, putative [Medicago truncatula]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/273 (53%), Positives = 193/273 (70%), Gaps = 8/273 (2%)

Query: 8   MQLGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQE 67
           M LGG FIW+Y+YQ IK  S+++KAL    E  E+ K  NKD D NA T LL+G   D E
Sbjct: 154 MALGGIFIWTYTYQTIKSRSLKFKAL----EAAEILKAPNKDLDGNADTPLLKG--KDNE 207

Query: 68  DVSVLVASTKSSSDPECQIIVPQASH--LQTRKESFWKRSLEFLHQLLEELLAPPTLAAI 125
           + ++ V+ +    D E QII  Q     L+  K+SF+ R +E L  LL EL++PP +A  
Sbjct: 208 NTAIEVSPSSYIEDSESQIIDEQDQSIVLKKEKQSFFNRMIEVLSHLLAELMSPPAIATF 267

Query: 126 VGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPL 185
            GF+FGAV WLRNLIIGD+AP  VIQD++E+LG+GTIPCITL+LGGNL  GL+SS++KPL
Sbjct: 268 FGFLFGAVAWLRNLIIGDNAPFSVIQDTLELLGNGTIPCITLLLGGNLTAGLKSSSVKPL 327

Query: 186 IIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFD 245
            +I+++  R   LP IG+++VKA A+ G LP DPL+ Y L++Q+ +PPAMNI TM QLFD
Sbjct: 328 TLISIIITRLFVLPVIGLFIVKAVASFGILPVDPLFQYTLVMQYAMPPAMNISTMAQLFD 387

Query: 246 VAQEECSVLFLWTYLVAALALTGWSMVYMWILS 278
           V  EECSV+ LWTY  AA+ALT WS   +W+LS
Sbjct: 388 VGNEECSVILLWTYSAAAIALTSWSTFLLWLLS 420

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2156847	395	AT5G65980 "AT5G65980" [Arabido	0.553	0.389	0.714	9.8e-68
TAIR|locus:2053908	396	AT2G17500 [Arabidopsis thalian	0.769	0.540	0.534	4.3e-61
TAIR|locus:2011731	390	AT1G76520 "AT1G76520" [Arabido	0.553	0.394	0.493	2.6e-45
TAIR|locus:2011746	415	AT1G76530 "AT1G76530" [Arabido	0.553	0.371	0.515	4.2e-40
TAIR|locus:2185123	431	AT5G01990 "AT5G01990" [Arabido	0.546	0.352	0.389	7.3e-27
TAIR|locus:2026366	457	AT1G71090 "AT1G71090" [Arabido	0.535	0.326	0.34	8.3e-22
CGD|CAL0005962	446	orf19.6117 [Candida albicans (	0.489	0.304	0.284	5.3e-05
UNIPROTKB|Q59RR6	446	ZSP11 "Potential Auxin Efflux	0.489	0.304	0.284	5.3e-05
CGD|CAL0001802	446	orf19.733 [Candida albicans (t	0.489	0.304	0.284	6.8e-05
UNIPROTKB|Q59TZ9	446	ZSP12 "Potential Auxin Efflux	0.489	0.304	0.284	6.8e-05

TAIR|locus:2156847 AT5G65980 "AT5G65980" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
 Identities = 110/154 (71%), Positives = 133/154 (86%)

Query:   125 IVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKP 184
             I+GF+FGA  WLRNLIIG++APLRVIQDS+++LG+GTIPCITLILGGNLIQGLRSS +K 
Sbjct:   242 ILGFVFGATNWLRNLIIGENAPLRVIQDSVKLLGEGTIPCITLILGGNLIQGLRSSAVKK 301

Query:   185 LIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLF 244
              +I+ V+ VRYI LP +GV VV+ A  LG+LP DPL+ YVLM+QF LPPAMNI TM QLF
Sbjct:   302 SVIVGVIIVRYILLPVVGVGVVQLAGNLGYLPPDPLFRYVLMLQFALPPAMNISTMAQLF 361

Query:   245 DVAQEECSVLFLWTYLVAALALTGWSMVYMWILS 278
             DVAQ+ECSV+FLWTYLVA+LALT WS +++ ILS
Sbjct:   362 DVAQDECSVIFLWTYLVASLALTVWSTIFLSILS 395

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2053908 AT2G17500 [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 116/217 (53%), Positives = 159/217 (73%)

Query:    64 DDQEDVSVLVASTKSSSDPECQII-VPQASHLQTRKES--FWKRSXXXXXXXXXXXXXXX 120
             ++ E +++  +++   +D +  ++  P+    +  KE   FW++                
Sbjct:   179 EESEKIAIKSSNSDLEADHKTHLLGAPEDKENKVVKEKTGFWRKGVDFLHEILEELLAPP 238

Query:   121 XXXXIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSS 180
                 I+GFIFGAV WLRNLIIGD APLR++Q + ++LGDGTIPC+T+ILGGNLIQGLRSS
Sbjct:   239 TLGAIIGFIFGAVRWLRNLIIGDDAPLRIVQSTAKLLGDGTIPCMTIILGGNLIQGLRSS 298

Query:   181 TLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM 240
              +KP++++ +VCVRYIA+P IG+ +V  AA LGFLP+DPL+ YVLM+QFTLPPAMNIGTM
Sbjct:   299 AVKPMVVLGIVCVRYIAMPIIGIGIVLTAANLGFLPADPLFQYVLMLQFTLPPAMNIGTM 358

Query:   241 TQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWIL 277
             TQL++VAQ+ECSVL LWTYLVA LALT WS +++ +L
Sbjct:   359 TQLYNVAQDECSVLMLWTYLVAILALTVWSTIFLHLL 395

GO:0009507 "chloroplast" evidence=ISM

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2011731 AT1G76520 "AT1G76520" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
 Identities = 76/154 (49%), Positives = 113/154 (73%)

Query:   125 IVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKP 184
             ++  + G +  LR LIIG  APLRV+QDS+ ++GDG +P +T+I+GGNL++GLRSS +K 
Sbjct:   237 MIALVIGLITPLRKLIIGTEAPLRVLQDSVTLVGDGAVPAMTMIIGGNLLKGLRSSGMKM 296

Query:   185 LIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLF 244
               II V+  RY+ LP  GV +V+ A  L  + S+PLY +VL++Q+ +PPAMN+GT+TQLF
Sbjct:   297 SSIIGVLVARYVLLPMSGVLIVRGAYKLDLVTSEPLYQFVLLLQYAVPPAMNLGTITQLF 356

Query:   245 DVAQEECSVLFLWTYLVAALALTGWSMVYMWILS 278
                + ECSV+ LWTY +A++ALT W   +MW+++
Sbjct:   357 GTGESECSVIMLWTYSLASIALTVWPTFFMWLVA 390

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015824 "proline transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2011746 AT1G76530 "AT1G76530" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 82/159 (51%), Positives = 112/159 (70%)

Query:   125 IVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLR-----S 179
             I+  + G +  LRNLIIG  AP RVIQDS+ +LGDG IP +TLILGGNL++G+R     S
Sbjct:   257 IIALVIGLITPLRNLIIGTVAPFRVIQDSLTLLGDGAIPAMTLILGGNLLKGMRRSEVRS 316

Query:   180 STLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGT 239
             S +K   II V+  RYI LP  GV +V+ A  L  + S+PLY +VL++Q+ +PPAMN+GT
Sbjct:   317 SEMKNSCIIGVLVARYILLPVSGVLLVRGAYKLDLVTSEPLYQFVLLLQYAVPPAMNLGT 376

Query:   240 MTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS 278
              TQLF   + ECSV+ LWTY +AA++LT W   +MW+++
Sbjct:   377 KTQLFGAGESECSVIMLWTYSLAAVSLTVWPTFFMWLVT 415

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2185123 AT5G01990 "AT5G01990" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 7.3e-27, Sum P(2) = 7.3e-27
 Identities = 60/154 (38%), Positives = 91/154 (59%)

Query:   125 IVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKP 184
             I+  I GA+ + + LI  + APL    DS  ILGD  IPCI L LGGNLI G  SS L  
Sbjct:   278 ILAMILGAIPFTKKLIFTNGAPLFFFTDSCMILGDAMIPCILLALGGNLINGPGSSKLGF 337

Query:   185 LIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDP-LYHYVLMVQFTLPPAMNIGTMTQL 243
                 A++  R + +P +G+ +V  A  LGFLP+D  ++ +VL++Q T+P ++  G +  L
Sbjct:   338 KTTAAIIIGRLVLVPPVGLGIVTVADKLGFLPADDKMFRFVLLLQHTMPTSVLSGAVANL 397

Query:   244 FDVAQEECSVLFLWTYLVAALALTGWSMVYMWIL 277
                 +E  +VLF W ++ A  ++ GW ++Y+ IL
Sbjct:   398 RGCGRESAAVLF-WVHIFAIFSMAGWMVLYINIL 430

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2026366 AT1G71090 "AT1G71090" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 8.3e-22, P = 8.3e-22
 Identities = 51/150 (34%), Positives = 88/150 (58%)

Query:   125 IVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKP 184
             ++  I G+V  L++++ G  APL  I DS+ I+G   +P + L+LGG L +G   STL  
Sbjct:   295 LLAIIIGSVPQLKSVVFGYDAPLSFITDSLNIMGSAMVPSVMLVLGGMLSEGPNESTLGL 354

Query:   185 LIIIAVVCVRYIALPFIGVWVVKAAAALGFLPS-DPLYHYVLMVQFTLPPAMNIGTMTQL 243
                I +   R + LP +G+ +V +A  LG + S DP++ +VL++Q++ P A+ +G +  L
Sbjct:   355 RTTIGISVARLLVLPLVGIGIVMSADKLGLISSADPMFKFVLLLQYSTPSAILLGAIASL 414

Query:   244 FDVAQEECSVLFLWTYLVAALALTGWSMVY 273
                A  E S L  W ++ A L+LT + +++
Sbjct:   415 RGYAVREASALLFWQHIFALLSLTFYIVIF 444

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

CGD|CAL0005962 orf19.6117 [Candida albicans (taxid:5476)]

 Score = 123 (48.4 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 45/158 (28%), Positives = 75/158 (47%)

Query:   125 IVGFIFGAVVWLRNLIIGDSAPLRVIQDS----IEILGDGTIPCITLILGGNLIQGLRSS 180
             +V  I  ++ +L+NLI  DS    ++ ++    I  LG  +IP I ++LG NL     S+
Sbjct:   281 LVAIIVASIPYLKNLIF-DSEQNSIVYNTFTKAITTLGGVSIPLILIVLGSNLYP---SN 336

Query:   181 TLKP------LIIIAVVCVRYIA-----LPFIGVWVVKAAAALGFLPSDPLYHYVLMVQF 229
              + P       I+   +  R I      LP I + V    A++     DP++  V  +  
Sbjct:   337 DIPPPSKHYNRILFGSLLSRMILPSAVLLPIIALCVKYIKASI---LDDPIFLIVAFILT 393

Query:   230 TLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALT 267
               PPA+ +  +TQL +V Q+E S +  W Y+V  +  T
Sbjct:   394 VSPPAIQLSQITQLNNVYQKEMSGVLFWGYVVLVVPTT 431

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|Q59RR6 ZSP11 "Potential Auxin Efflux Carrier protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 123 (48.4 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 45/158 (28%), Positives = 75/158 (47%)

Query:   125 IVGFIFGAVVWLRNLIIGDSAPLRVIQDS----IEILGDGTIPCITLILGGNLIQGLRSS 180
             +V  I  ++ +L+NLI  DS    ++ ++    I  LG  +IP I ++LG NL     S+
Sbjct:   281 LVAIIVASIPYLKNLIF-DSEQNSIVYNTFTKAITTLGGVSIPLILIVLGSNLYP---SN 336

Query:   181 TLKP------LIIIAVVCVRYIA-----LPFIGVWVVKAAAALGFLPSDPLYHYVLMVQF 229
              + P       I+   +  R I      LP I + V    A++     DP++  V  +  
Sbjct:   337 DIPPPSKHYNRILFGSLLSRMILPSAVLLPIIALCVKYIKASI---LDDPIFLIVAFILT 393

Query:   230 TLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALT 267
               PPA+ +  +TQL +V Q+E S +  W Y+V  +  T
Sbjct:   394 VSPPAIQLSQITQLNNVYQKEMSGVLFWGYVVLVVPTT 431

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0001802 orf19.733 [Candida albicans (taxid:5476)]

 Score = 122 (48.0 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 45/158 (28%), Positives = 75/158 (47%)

Query:   125 IVGFIFGAVVWLRNLIIGDSAPLRVIQDS----IEILGDGTIPCITLILGGNLIQGLRSS 180
             +V  I  ++ +L+NLI  DS    ++ ++    I  LG  +IP I ++LG NL     S+
Sbjct:   281 LVAIIVASIPYLKNLIF-DSEQNSIVYNTFTKAITTLGGVSIPLILIVLGSNLYL---SN 336

Query:   181 TLKP------LIIIAVVCVRYIA-----LPFIGVWVVKAAAALGFLPSDPLYHYVLMVQF 229
              + P       I+   +  R I      LP I + V    A++     DP++  V  +  
Sbjct:   337 DIPPPSKHYNRILFGSLLSRMILPSAVLLPIIALCVKYIKASI---LDDPIFLIVAFILT 393

Query:   230 TLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALT 267
               PPA+ +  +TQL +V Q+E S +  W Y+V  +  T
Sbjct:   394 VSPPAIQLSQITQLNNVYQKEMSGVLFWGYVVLVVPTT 431

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|Q59TZ9 ZSP12 "Potential Auxin Efflux Carrier protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 122 (48.0 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 45/158 (28%), Positives = 75/158 (47%)

Query:   125 IVGFIFGAVVWLRNLIIGDSAPLRVIQDS----IEILGDGTIPCITLILGGNLIQGLRSS 180
             +V  I  ++ +L+NLI  DS    ++ ++    I  LG  +IP I ++LG NL     S+
Sbjct:   281 LVAIIVASIPYLKNLIF-DSEQNSIVYNTFTKAITTLGGVSIPLILIVLGSNLYL---SN 336

Query:   181 TLKP------LIIIAVVCVRYIA-----LPFIGVWVVKAAAALGFLPSDPLYHYVLMVQF 229
              + P       I+   +  R I      LP I + V    A++     DP++  V  +  
Sbjct:   337 DIPPPSKHYNRILFGSLLSRMILPSAVLLPIIALCVKYIKASI---LDDPIFLIVAFILT 393

Query:   230 TLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALT 267
               PPA+ +  +TQL +V Q+E S +  W Y+V  +  T
Sbjct:   394 VSPPAIQLSQITQLNNVYQKEMSGVLFWGYVVLVVPTT 431


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      278       259   0.00088  114 3  11 22  0.40    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  194 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.24u 0.11s 20.35t   Elapsed:  00:00:01
  Total cpu time:  20.25u 0.11s 20.36t   Elapsed:  00:00:01
  Start:  Mon May 20 23:58:55 2013   End:  Mon May 20 23:58:56 2013

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V000390 hypothetical protein (397 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
pfam03547	321	pfam03547, Mem_trans, Membrane transport protein	1e-32
COG0679	311	COG0679, COG0679, Predicted permeases [General fun	7e-08

>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein

 Score =  121 bits (306), Expect = 1e-32
 Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 11/159 (6%)

Query: 112 LLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGG 171
           LL+ +L PPT A+++G I G V +L  LI         IQDSI ILGD  IP     LG 
Sbjct: 174 LLKLILNPPTYASLLGLILGLVGFLLPLIFP-----EFIQDSISILGDAAIPMALFSLGL 228

Query: 172 NLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTL 231
            L  G   S+L        + +R I +P + + +V        L    L   V +++  L
Sbjct: 229 TLALGKLKSSLGAATATIHLILRLILMPLVMLGIVLLLG----LRGLTL--LVAILEAAL 282

Query: 232 PPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWS 270
           PPA+ +G + QL++V +EE S +  WT L+A L L  W 
Sbjct: 283 PPAIVLGVIAQLYNVDEEEASTVVFWTTLLALLTLPLWI 321

This family includes auxin efflux carrier proteins and other transporter proteins from all domains of life. Length = 321

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only]

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 16/159 (10%)

Query: 119 PPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLR 178
           P  +A I+G +   +           +    +  ++++L     P   + LG +L   L+
Sbjct: 169 PLIIALILGLLLNLLGI---------SLPAPLDTAVDLLASAASPLALIALGLSLAF-LK 218

Query: 179 SSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIG 238
               KP II+  + ++ +  P + +           L    L   VL++   +P A+N  
Sbjct: 219 LKGSKPPIILIALSLKLLLAPLVAL------LVAKLLGLSGLALQVLVLLSAMPTAVNAY 272

Query: 239 TMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWIL 277
            + + +       +   L + L++ L L    ++ +  L
Sbjct: 273 VLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLRSL 311

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
KOG2722	408	consensus Predicted membrane protein [Function unk	100.0
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	99.96
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	99.87
PRK09903	314	putative transporter YfdV; Provisional	99.85
COG0679	311	Predicted permeases [General function prediction o	99.78
TIGR00841	286	bass bile acid transporter. Functionally character	98.9
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	98.3
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	98.19
COG0385	319	Predicted Na+-dependent transporter [General funct	97.97
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	97.6
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	96.01
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	86.96
PRK10711	231	hypothetical protein; Provisional	86.22
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	83.63
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	81.32
PRK04288	232	antiholin-like protein LrgB; Provisional	81.23

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=2.2e-56  Score=417.51  Aligned_cols=255  Identities=42%  Similarity=0.790  Sum_probs=207.7

Q ss_pred             CchhhhhhhhhhHhhhheeeeeeccchhhHH-hhhhcCCCCcCCcccccccchhhhhh-hccCC-CCCcccchhhcccCC
Q 023748            1 MYLLANLMQLGGFFIWSYSYQLIKQSSVRYK-ALAQAAEPEEVPKEVNKDFDANAQTQ-LLRGT-TDDQEDVSVLVASTK   77 (278)
Q Consensus         1 ~~y~S~smavg~i~iwtyvy~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~   77 (278)
                      |.|+|||||+|++++|||+|||+.+++.... .+++. .++..          .++-+ .-.+. +|+.+|+++++    
T Consensus       149 i~Y~sf~~~lg~il~wty~Y~~~~~p~~~~~~~~~~~-~Ve~~----------~~~~~~~s~e~~~~~~~k~~ll~----  213 (408)
T KOG2722|consen  149 ISYVSFSQQLGQILRWTYVYRMLLPPNLELMSALKES-PVEAL----------LESVPQPSVESDEDSTCKTLLLA----  213 (408)
T ss_pred             hhHHHHHHHhhhhEEEEEEeeeecCCchhhhhcCChh-hhhhh----------hhccCCCCccccccccccccccc----
Confidence            5799999999999999999999999964332 22221 11111          00000 00000 11113333331    


Q ss_pred             CCCCCccccccCcccchhhhhhhhhhhhHHHHHHH-HHHhhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHH
Q 023748           78 SSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQL-LEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEI  156 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lk~l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~  156 (278)
                      +.+|+.        .+...++++.++|.+....+. +|++++||++|+++|+++|++||+|+++|++++|+++++|++.+
T Consensus       214 ~~en~~--------~~~~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~l  285 (408)
T KOG2722|consen  214 SKENRN--------NQVVGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTL  285 (408)
T ss_pred             ccccCC--------CceeeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHH
Confidence            111111        111124456666666655555 99999999999999999999999999999999999999999999


Q ss_pred             hccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHhhcchHHH
Q 023748          157 LGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP-SDPLYHYVLMVQFTLPPAM  235 (278)
Q Consensus       157 lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~-~dpl~~~Vlllq~a~P~A~  235 (278)
                      +|++++||+++++|+||.+|++++..+.+++++++++||+++|+++++++..++|+|+++ +||+|++|+++|+++|||+
T Consensus       286 lG~~~IP~illvLGgnL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi  365 (408)
T KOG2722|consen  286 LGDGAIPCILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAI  365 (408)
T ss_pred             hccccchhhhhhhccccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchh
Confidence            999999999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 023748          236 NIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS  278 (278)
Q Consensus       236 ~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~~l~  278 (278)
                      |++++||++|.+|+|||++++|+|+++.+++++|+++|+|++.
T Consensus       366 ~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~~f~~lv~  408 (408)
T KOG2722|consen  366 NLGTITQLNGVAERECSVILFWTYAVASLSLTVWSVFFLWLVV  408 (408)
T ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999973

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=99.96  E-value=1.1e-28  Score=234.29  Aligned_cols=161  Identities=31%  Similarity=0.468  Sum_probs=140.2

Q ss_pred             hhhhhhhHHHHHHH-HHHhhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhccccc
Q 023748           99 ESFWKRSLEFLHQL-LEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGL  177 (278)
Q Consensus        99 ~~~~~~~~~~~~~~-lk~l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~  177 (278)
                      .+.+++.++...+. +|.++||+++|.++|++++++|+.+++++.     .++.++++++|++++|++|+++|++|++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~  298 (385)
T PF03547_consen  224 QKSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGP  298 (385)
T ss_pred             hhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence            34444444444444 677899999999999999999987765444     799999999999999999999999999887


Q ss_pred             ccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHH
Q 023748          178 RSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLW  257 (278)
Q Consensus       178 ~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~  257 (278)
                      ++...+.+.....+++|++++|++++++++++      ..|+....++++|+++|+|++..++|++||.+++++|..++|
T Consensus       299 ~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~------~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~  372 (385)
T PF03547_consen  299 RKSALGWKPSIIAVLVRLIILPLIGIGIVFLL------GLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFW  372 (385)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHH
Confidence            66677778878889999999999999998854      247778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023748          258 TYLVAALALTGWS  270 (278)
Q Consensus       258 s~l~sivtl~lw~  270 (278)
                      ||+++++++|+|+
T Consensus       373 ~~~~~~~~~~~~~  385 (385)
T PF03547_consen  373 STLLSIPTLPLWI  385 (385)
T ss_pred             HHHHHHHHHHHHC
Confidence            9999999999995

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=99.87  E-value=4e-21  Score=179.80  Aligned_cols=146  Identities=21%  Similarity=0.254  Sum_probs=128.1

Q ss_pred             HHHHHH-hhChhHHHHHHHHHHHhhHhHhHhhhcCCCch-hhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHH
Q 023748          110 HQLLEE-LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLII  187 (278)
Q Consensus       110 ~~~lk~-l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL-~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i  187 (278)
                      ++.+|+ +.||+++|.++|+++..+++          ++ .++.++++++|++++|++|+.+|..+...  +.+.+++..
T Consensus       173 ~~~~~~~~~nP~iia~i~Gl~~~~~~i----------~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~--~~~~~~~~~  240 (321)
T TIGR00946       173 IFVWKKLIKFPPLWAPLLSVILSLVGF----------KMPGLILKSISILSGATTPMALFSLGLALSPR--KIKLGVRDA  240 (321)
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhh----------cCcHHHHHHHHHHHHHHHHHHHHHHHHhhChh--hhccChHHH
Confidence            344555 47999999999999999873          34 79999999999999999999999999753  334456788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 023748          188 IAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALT  267 (278)
Q Consensus       188 ~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~  267 (278)
                      ...+++|+++.|++++++...      ++.|+..+.++++++|+|+|.+..++|++||.|++++|..+++||++|++|+|
T Consensus       241 ~~~~~~klil~P~i~~~~~~~------~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp  314 (321)
T TIGR00946       241 ILALIVRFLVQPAVMAGISKL------IGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLP  314 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999887753      34578899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 023748          268 GWSMVY  273 (278)
Q Consensus       268 lw~~l~  273 (278)
                      +|+.++
T Consensus       315 ~~~~l~  320 (321)
T TIGR00946       315 LFIILL  320 (321)
T ss_pred             HHHHHh
Confidence            999864

>PRK09903 putative transporter YfdV; Provisional

Probab=99.85  E-value=3.6e-20  Score=173.23  Aligned_cols=140  Identities=14%  Similarity=0.126  Sum_probs=122.4

Q ss_pred             HhhChhHHHHHHHHHHHhhHhHhHhhhcCCCch-hhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHH
Q 023748          115 ELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCV  193 (278)
Q Consensus       115 ~l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL-~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~v  193 (278)
                      -+.||+++|.++|+++...+          .++ .++.++++++|++++|++|+.+|++|++...  +.+ +..+...+.
T Consensus       170 ~~~nP~iia~~~gl~~~l~~----------i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~--~~~-~~~~~~~~~  236 (314)
T PRK09903        170 AAKEPVVWAPVLATILVLVG----------VKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKF--EFS-AEIAYNTFL  236 (314)
T ss_pred             HHhchHHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccc-HHHHHHHHH
Confidence            36799999999999998775          344 7999999999999999999999999998532  222 456678889


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748          194 RYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVY  273 (278)
Q Consensus       194 RlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~  273 (278)
                      |+++.|++.+++...      ++.|+..+.++++++|+|+|.+..++|++||.|++.++..++.||++|++|+|+|+.++
T Consensus       237 Kli~~P~i~~~~~~~------~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~  310 (314)
T PRK09903        237 KLILMPLALLLVGMA------CHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS  310 (314)
T ss_pred             HHHHHHHHHHHHHHH------cCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999876653      34578899999999999999999999999999999999999999999999999999874

>COG0679 Predicted permeases [General function prediction only]

Probab=99.78  E-value=1.1e-17  Score=156.81  Aligned_cols=147  Identities=21%  Similarity=0.344  Sum_probs=127.7

Q ss_pred             HHHH-hhChhHHHHHHHHHHHhhHhHhHhhhcCCCch-hhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHH
Q 023748          112 LLEE-LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIA  189 (278)
Q Consensus       112 ~lk~-l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL-~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~  189 (278)
                      .+|+ +.||+++|.++|+++...+.          ++ .++.++++++|++++|++|+.+|.+|++ .+..+.+.+.++.
T Consensus       161 ~~~~~~~nP~i~a~i~g~~~~~~~i----------~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~~~~~~~~~  229 (311)
T COG0679         161 VLKKLLTNPLIIALILGLLLNLLGI----------SLPAPLDTAVDLLASAASPLALIALGLSLAF-LKLKGSKPPIILI  229 (311)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHcCC----------CCcHHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhccccchhHHH
Confidence            3444 57999999999999998763          33 6999999999999999999999999998 2345556677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 023748          190 VVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGW  269 (278)
Q Consensus       190 ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw  269 (278)
                      ....|+++.|++.+++.++      ++.++....+++++.|+|+|.|..++|++||.+++.++.+++.||++|++|+|.|
T Consensus       230 ~~~~kll~~Pl~~~~~~~~------~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~  303 (311)
T COG0679         230 ALSLKLLLAPLVALLVAKL------LGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLL  303 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHH------cCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            7788999999999998764      3346667799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 023748          270 SMVYMW  275 (278)
Q Consensus       270 ~~l~~~  275 (278)
                      ...+.+
T Consensus       304 ~~~l~~  309 (311)
T COG0679         304 ILLLLR  309 (311)
T ss_pred             HHHHhc
Confidence            888765

>TIGR00841 bass bile acid transporter

Probab=98.90  E-value=8.4e-09  Score=95.82  Aligned_cols=109  Identities=16%  Similarity=0.134  Sum_probs=93.2

Q ss_pred             hHHHHHHHhHhccccc-ccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHH
Q 023748          162 IPCITLILGGNLIQGL-RSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM  240 (278)
Q Consensus       162 iPl~llilG~~L~~~~-~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~i  240 (278)
                      ...+|+.+|.++.... ++...+++.+....+.|++++|++++++.+.      ++.||.....+++.+++|+|.+..++
T Consensus        14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~------~~l~~~~~~glvL~~~~P~~~~s~v~   87 (286)
T TIGR00841        14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKV------FKLPPELAVGVLIVGCCPGGTASNVF   87 (286)
T ss_pred             HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHheeeCCCchHHHHH
Confidence            6678889999998632 2222345677778889999999999998764      34688999999999999999999999


Q ss_pred             HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748          241 TQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWI  276 (278)
Q Consensus       241 a~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~~  276 (278)
                      ++++|+|.+.++..+..++++|++++|+|+.++...
T Consensus        88 t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~  123 (286)
T TIGR00841        88 TYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKM  123 (286)
T ss_pred             HHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988653

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=98.30  E-value=8.6e-06  Score=70.90  Aligned_cols=109  Identities=16%  Similarity=0.175  Sum_probs=83.0

Q ss_pred             hHHHHHHHhHhcccc-cccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHH
Q 023748          162 IPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM  240 (278)
Q Consensus       162 iPl~llilG~~L~~~-~~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~i  240 (278)
                      +-+.|+.+|.++... .++...+++.+....+..++++|++++++.+..     ++.+|.+..-+++.+++|.+.....+
T Consensus         4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~~~~~~~~Gl~l~~~~P~~~~s~~~   78 (187)
T PF01758_consen    4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LPLSPALALGLLLVAACPGGPASNVF   78 (187)
T ss_dssp             HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT--HHHHHHHHHHHHS-B-THHHHH
T ss_pred             hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHhcCCcHHHHHHH
Confidence            345677777777643 223333467788888999999999999998432     56788899999999999999999999


Q ss_pred             HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748          241 TQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW  275 (278)
Q Consensus       241 a~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~  275 (278)
                      +.+.|+|...+.....++++++++.+|+|..++..
T Consensus        79 t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~  113 (187)
T PF01758_consen   79 TYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG  113 (187)
T ss_dssp             HHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHhCCCcccccceeeHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999988853

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>TIGR00832 acr3 arsenical-resistance protein

Probab=98.19  E-value=7e-05  Score=71.15  Aligned_cols=141  Identities=15%  Similarity=0.030  Sum_probs=104.0

Q ss_pred             hhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhH------HHHHHHhHhcccc-cccCCCChhHHHHHH
Q 023748          119 PPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIP------CITLILGGNLIQG-LRSSTLKPLIIIAVV  191 (278)
Q Consensus       119 P~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiP------l~llilG~~L~~~-~~~~~~~~~~i~~ii  191 (278)
                      ..+++.++|++++..-+         .........  .+.....|      .+|+.+|.++... .++..-++|.+....
T Consensus        11 ~~~~~~i~~~~~g~~~P---------~~~~~~~~~--~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~   79 (328)
T TIGR00832        11 WIFLAIAAGVGLGVLFP---------SVFQALAAL--EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSL   79 (328)
T ss_pred             HHHHHHHHHHHHHHhcc---------ccHHHHHHH--HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHH
Confidence            34667777888876542         111122111  12334445      3566777777642 233334567888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 023748          192 CVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSM  271 (278)
Q Consensus       192 ~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~  271 (278)
                      +.-++++|++++++.+..     ++.+|.+..=+++.+++|.+..+-.++.+.++|...+-.....+++++++.+|.+..
T Consensus        80 ~~qfvi~Plla~~l~~l~-----~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~  154 (328)
T TIGR00832        80 FINWIIGPFLMFLLAWLF-----LRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAW  154 (328)
T ss_pred             HHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998753     356778899999999999999999999999999999988889999999999999988


Q ss_pred             HHHH
Q 023748          272 VYMW  275 (278)
Q Consensus       272 l~~~  275 (278)
                      +|..
T Consensus       155 ll~~  158 (328)
T TIGR00832       155 LLLG  158 (328)
T ss_pred             HHHh
Confidence            7764

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=97.97  E-value=0.0001  Score=69.75  Aligned_cols=111  Identities=13%  Similarity=0.129  Sum_probs=91.8

Q ss_pred             cchhHHHHHHHhHhcccc-cccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHH
Q 023748          159 DGTIPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNI  237 (278)
Q Consensus       159 ~aaiPl~llilG~~L~~~-~~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~  237 (278)
                      ...+-++|+..|..|... .+..-.+|+..+.+.+.-++++|++++++.+.      ++.||....=+++..++|.+..+
T Consensus        41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~------~~l~~~l~~Gl~ll~~~Pggv~S  114 (319)
T COG0385          41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKL------FPLPPELAVGLLLLGCCPGGVAS  114 (319)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHhHHheeeCCCchhH
Confidence            344556777778887753 23344467788889999999999999999874      45688788888999999999999


Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748          238 GTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW  275 (278)
Q Consensus       238 ~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~  275 (278)
                      -.++.++++|...+=.....+++++++..|+|+.+|+.
T Consensus       115 ~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~  152 (319)
T COG0385         115 NAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAG  152 (319)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999888888889999999999999998763

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=97.60  E-value=0.0011  Score=62.57  Aligned_cols=144  Identities=16%  Similarity=0.162  Sum_probs=103.0

Q ss_pred             hhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhcccc-cccCCCChhHHHHHHHHHHHH
Q 023748          119 PPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIA  197 (278)
Q Consensus       119 P~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~-~~~~~~~~~~i~~ii~vRlil  197 (278)
                      +-+++.+++++++..-|-    .+  .....+..  +......+.++.++-|.+|... .++...++|....+...-+++
T Consensus         2 ~fl~~l~~ai~la~~~P~----~g--~~~~~~~~--~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl   73 (313)
T PF13593_consen    2 WFLLGLLLAILLAYLFPA----PG--AAGGVIKP--EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVL   73 (313)
T ss_pred             chHHHHHHHHHHHHHcCc----cc--ccCCccch--hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHH
Confidence            345666777776654321    01  11112210  2333444888888999888753 233344567777788899999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHH-HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748          198 LPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIG-TMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM  274 (278)
Q Consensus       198 lP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~-~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~  274 (278)
                      .|++++++......  +  .++.+..=+++.+++|+...++ .++++.|+|+..+-.....+.++.++..|+|+.+++
T Consensus        74 ~Pll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l  147 (313)
T PF13593_consen   74 FPLLGFGLSRLFPA--F--LPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL  147 (313)
T ss_pred             HHHHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence            99999999876421  1  3666888899999999987665 699999999988888888899999999999999887

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=96.01  E-value=0.38  Score=46.12  Aligned_cols=139  Identities=17%  Similarity=0.168  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHH--HhccchhHHHHHHHhHh---ccccc----ccCCCChhHHHHH
Q 023748          120 PTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIE--ILGDGTIPCITLILGGN---LIQGL----RSSTLKPLIIIAV  190 (278)
Q Consensus       120 ~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~--~lG~aaiPl~llilG~~---L~~~~----~~~~~~~~~i~~i  190 (278)
                      ..++.++|+.+|..-+             -+.+.++  ..|+..+|.+...+=+.   +.+..    ++-.-++|.....
T Consensus        20 v~l~i~~Gi~lG~~~p-------------~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~ls   86 (342)
T COG0798          20 VFLAIAIGILLGVHFP-------------GLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILS   86 (342)
T ss_pred             HHHHHHHHHHHHhccc-------------chhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHH
Confidence            5778888888875532             1333444  56677788766443322   12211    1122235677788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 023748          191 VCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWS  270 (278)
Q Consensus       191 i~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~  270 (278)
                      .+.-.++-|++.+.+.+..     +++.|.++.=+++....|+-..+..-+++-++|.+.+++.+-+..++.++..+.|.
T Consensus        87 L~~Nwii~P~lm~~la~~f-----l~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~  161 (342)
T COG0798          87 LFVNWIIGPLLMFALAWFF-----LPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLG  161 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHH
Confidence            8999999999999998864     46677888888899999999888999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 023748          271 MVYMWI  276 (278)
Q Consensus       271 ~l~~~~  276 (278)
                      .+|+..
T Consensus       162 ~~~l~v  167 (342)
T COG0798         162 KFFLGV  167 (342)
T ss_pred             HHHHhh
Confidence            888764

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=86.96  E-value=22  Score=32.07  Aligned_cols=135  Identities=21%  Similarity=0.165  Sum_probs=77.0

Q ss_pred             hhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHHH
Q 023748          116 LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRY  195 (278)
Q Consensus       116 l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vRl  195 (278)
                      ++||.+++.++=+.+-..-         +.|..--.+.-+++...--|. +..+|--|++..+.-+-+++.++..+++=-
T Consensus        19 ~l~P~l~a~~~ii~~L~~~---------~i~y~~Y~~gg~~l~~lLgPa-tVALAvPLY~~~~~l~~~~~~il~~~~~g~   88 (215)
T PF04172_consen   19 FLNPLLIAIVLIIAFLLLT---------GIPYEDYMQGGDILSFLLGPA-TVALAVPLYRQRRLLKKNWIPILVGVLVGS   88 (215)
T ss_pred             cccHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999887755543332         256544445555554444443 568888888754333333444444444333


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh-cchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 023748          196 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQF-TLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGW  269 (278)
Q Consensus       196 illP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~-a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw  269 (278)
                      ++--...+.+.+   .+|   .|+.....+.--+ .+|-|+.+   ++..|++.+..+..+..|=++-.+-=|..
T Consensus        89 ~~~~~~~~~l~~---~lg---l~~~~~~Sl~pkSVTtpiAi~i---s~~iGG~~sLta~~VvitGi~Ga~~g~~l  154 (215)
T PF04172_consen   89 LVSIFSAVLLAR---LLG---LSPEIILSLAPKSVTTPIAIEI---SEQIGGIPSLTAVFVVITGILGAVLGPPL  154 (215)
T ss_pred             HHHHHHHHHHHH---HHC---cCHHHHHHHHHHHhhHHHHHHH---HHHhCChHHHHHHHHHHHhhHHHHhHHHH
Confidence            333333333333   224   3554444444443 46777664   88999999999988888866655544433

>PRK10711 hypothetical protein; Provisional

Probab=86.22  E-value=26  Score=31.98  Aligned_cols=134  Identities=19%  Similarity=0.176  Sum_probs=79.6

Q ss_pred             hhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHHH
Q 023748          116 LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRY  195 (278)
Q Consensus       116 l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vRl  195 (278)
                      ++||.+++.++-+.+-..-         +.|..--++.-+.+...--|- +..++.-|++..+.-+-.++.+...+++=-
T Consensus        30 ~l~Pll~s~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgPA-tVALAvPLY~q~~~lk~~~~~I~~~~~vG~   99 (231)
T PRK10711         30 LLNPLLVAMVVIIPFLLLT---------GIPYEHYFKGSEVLNDLLQPA-VVALAFPLYEQLHQIRARWKSIISICFIGS   99 (231)
T ss_pred             cccHHHHHHHHHHHHHHHh---------CCCHHHHHhccHHHHhhhhHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            5799999987666654332         355544444545555444443 337777888754333334445554444444


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhc-chHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 023748          196 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFT-LPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTG  268 (278)
Q Consensus       196 illP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a-~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~l  268 (278)
                      ++--...+.+.+.   +|   .|+.....++-.+. +|-|+.+   ++..|+.++..+..+..|=++-.+--|.
T Consensus       100 ~v~i~s~~~l~~~---lg---~~~~~~~Sl~pkSVTtPIAm~i---s~~iGG~~sLta~~ViitGi~Ga~~g~~  164 (231)
T PRK10711        100 VVAMVTGTAVALW---MG---ATPEIAASILPKSVTTPIAMAV---GGSIGGIPAISAVCVIFVGILGAVFGHT  164 (231)
T ss_pred             HHHHHHHHHHHHH---HC---cCHHHHHHHhhhhhhHHHHHHH---HHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444442   23   36656666555554 7878765   7999999999999888886665554433

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=83.63  E-value=27  Score=31.94  Aligned_cols=137  Identities=17%  Similarity=0.083  Sum_probs=76.1

Q ss_pred             HhhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHH
Q 023748          115 ELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVR  194 (278)
Q Consensus       115 ~l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vR  194 (278)
                      .++||..++.++.+.+-..-         +.|..-=.+.-+.+-..--| ++..++.=|++..+.-+-.|+.++..+++=
T Consensus        31 ~~l~PlLv~~~~li~~L~~~---------~i~Y~~Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vG  100 (230)
T COG1346          31 PFLNPLLVATVLLIAFLLLF---------GISYEDYMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVG  100 (230)
T ss_pred             cccchHHHHHHHHHHHHHHc---------CCCHHHHhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999988777665432         23332222222222222234 455777778875444444455555544444


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhc-chHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 023748          195 YIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFT-LPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWS  270 (278)
Q Consensus       195 lillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a-~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~  270 (278)
                      -++-=..++.+.+   .   ++.|+.....++=.+. +|-||-+   ++..|+-++..+..+..+=++-.+.-|..+
T Consensus       101 s~~ai~s~~llak---~---~g~~~~~~~Sl~PkSvTTpiAm~v---s~~iGGip~ltav~Vi~tGi~Gavlg~~ll  168 (230)
T COG1346         101 SVVAIISGVLLAK---L---FGLSPELILSLLPKSVTTPIAMEV---SESIGGIPALTAVFVILTGILGAVLGPLLL  168 (230)
T ss_pred             HHHHHHHHHHHHH---H---hCCCHHHHHHhcccccccHHHHHH---HHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333   2   3346655555555544 6777654   788888888888888888666555444433

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=81.32  E-value=1.6  Score=42.49  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=69.3

Q ss_pred             HHHHHHhHhcccccccCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHH
Q 023748          164 CITLILGGNLIQGLRSST-LKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQ  242 (278)
Q Consensus       164 l~llilG~~L~~~~~~~~-~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~  242 (278)
                      ..++.+|.++.-...... ..+..+....+.+++++|+.++.+.+.+    .+|.+. . ..+++..+.+|+........
T Consensus       121 ~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~----~lP~~~-~-ag~~Lvtc~~p~g~~~~~~~  194 (371)
T KOG2718|consen  121 SNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVL----LLPAAL-A-AGLLLVTCVSPGGGGNYLTS  194 (371)
T ss_pred             HHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHh----hCCccc-c-ceeEEEEeccCCcchhhhee
Confidence            445666666653222211 2223444455669999999999976432    244332 1 45667777888877777777


Q ss_pred             Hc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748          243 LF-DVAQEECSVLFLWTYLVAALALTGWSMVYMWI  276 (278)
Q Consensus       243 ~~-g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~~  276 (278)
                      .+ +++....-.....+++.+++.+|+|...+...
T Consensus       195 ~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~  229 (371)
T KOG2718|consen  195 KRLPGDVTLSILMTTISTVLAVILTPLLSILLGRA  229 (371)
T ss_pred             ecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence            77 66665566666667999999999999887543

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=81.23  E-value=44  Score=30.59  Aligned_cols=134  Identities=14%  Similarity=0.069  Sum_probs=77.1

Q ss_pred             hhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHHH
Q 023748          116 LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRY  195 (278)
Q Consensus       116 l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vRl  195 (278)
                      ++||.+++.++-+.+-..-         +.|..--++.-+.+...--|- +..++--|++..+.-+-.++.+...+++=-
T Consensus        35 ~lnPll~s~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgPA-tVALAvPLY~q~~~lk~~~~~Il~~~~vG~  104 (232)
T PRK04288         35 LFTPLFVAMVLGIAFLKLT---------GISYEEYNIGGDIISFFLEPA-TIAFAIPLYKKRDVLKKYWWQILGGIVVGS  104 (232)
T ss_pred             chhHHHHHHHHHHHHHHHh---------CCCHHHHHhhhHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4799988887766654332         355543344444443333332 336677788754333333444444444444


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhc-chHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 023748          196 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFT-LPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTG  268 (278)
Q Consensus       196 illP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a-~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~l  268 (278)
                      ++--...+.+.+.      ++.|+.....++-.+. +|-|+.+   ++..|+.++..+..+..+=++-.+--|.
T Consensus       105 ~~~i~s~~~la~~------lgl~~~~~~Sl~pKSVTtPIAm~i---s~~iGG~psLtA~~ViitGi~Gai~g~~  169 (232)
T PRK04288        105 VCSVLIIYLVAKL------IQLDNAVMASMLPQAATTAIALPV---SAGIGGIKEITSFAVIFNAVIIYALGAK  169 (232)
T ss_pred             HHHHHHHHHHHHH------HCcCHHHHHHHhhHhhhHHHHHHH---HHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444432      3346656555555554 6777765   8999999999999988887666554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	278
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 42/159 (26%)

Query: 44  KEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWK 103
            +    F+ + +  LL  TT  ++    L A+T         I +   S   T  E    
Sbjct: 256 AKAWNAFNLSCKI-LL--TTRFKQVTDFLSAAT------TTHISLDHHSMTLTPDEV--- 303

Query: 104 RSL--EFLHQLLEELLAPPTLAAIVGF---IFGAVV------WLRNLIIGDSAPLRVIQD 152
           +SL  ++L    ++L  P  +         I    +      W     +       +I+ 
Sbjct: 304 KSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 153 SIEILG----------------DGTIPCITL-ILGGNLI 174
           S+ +L                    IP I L ++  ++I
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	98.98

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=98.98  E-value=4.1e-09  Score=98.47  Aligned_cols=139  Identities=12%  Similarity=-0.049  Sum_probs=108.3

Q ss_pred             hChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhccccc-ccCCCChhHHHHHHHHHH
Q 023748          117 LAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGL-RSSTLKPLIIIAVVCVRY  195 (278)
Q Consensus       117 ~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~-~~~~~~~~~i~~ii~vRl  195 (278)
                      -++.++..++|.+++..-+-         ....+    +..-..++.++|+..|.++.... ++...+++......+.++
T Consensus        17 ~~~~~l~i~~~~~lg~~~P~---------~~~~~----~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~   83 (332)
T 3zux_A           17 GKTFSLWAALFAAAAFFAPD---------TFKWA----GPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQF   83 (332)
T ss_dssp             HHTHHHHHHHHHHHHHHCGG---------GTGGG----GGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcch---------hhhhh----HHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHH
Confidence            34557777777777765320         01111    11223578899999999998642 222234566777889999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748          196 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM  274 (278)
Q Consensus       196 illP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~  274 (278)
                      +++|++++++.++      ++.||.+...+++..++|++..+.++++++|+|.+.+......+++++++++|+|..++.
T Consensus        84 vi~Pll~~~l~~~------~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~  156 (332)
T 3zux_A           84 AIMPATAWCLSKL------LNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA  156 (332)
T ss_dssp             HHHHHHHHHHHHH------TTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH------hCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999998874      356899999999999999999999999999999999999999999999999999998875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00